Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	TTotCov	TVarCov	NTotCov	NVarCov	Trna_tot	Trna_ref	Trna_var	Trna_alt1	Trna_alt2
ARHGEF10L	55160	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	18023596	18023596	+	Silent	SNP	G	G	A	novel		TCGA-B9-5155-01A-01D-1589-08	TCGA-B9-5155-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9ca1b195-86fe-4597-933d-93903a61f676	d8826711-1c53-40c3-b444-2c9614f49b6f	25	12	25	0	27	10	17	0	0
TMCO4	255104	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	20063898	20063898	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B9-5155-01A-01D-1589-08	TCGA-B9-5155-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9ca1b195-86fe-4597-933d-93903a61f676	d8826711-1c53-40c3-b444-2c9614f49b6f	160	91	113	0	14	5	9	0	0
TAL1	6886	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	47685450	47685450	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B9-5155-01A-01D-1589-08	TCGA-B9-5155-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9ca1b195-86fe-4597-933d-93903a61f676	d8826711-1c53-40c3-b444-2c9614f49b6f	74	38	53	0	0	0	0	0	0
SYDE2	84144	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	85656155	85656155	+	Silent	SNP	T	T	C	novel		TCGA-B9-5155-01A-01D-1589-08	TCGA-B9-5155-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9ca1b195-86fe-4597-933d-93903a61f676	d8826711-1c53-40c3-b444-2c9614f49b6f	74	35	63	0	3	0	3	0	0
HS2ST1	9653	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	87569257	87569257	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B9-5155-01A-01D-1589-08	TCGA-B9-5155-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9ca1b195-86fe-4597-933d-93903a61f676	d8826711-1c53-40c3-b444-2c9614f49b6f	239	106	239	1	34	22	12	0	0
LRRC8C	84230	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	90179254	90179254	+	Silent	SNP	T	T	C	novel		TCGA-B9-5155-01A-01D-1589-08	TCGA-B9-5155-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9ca1b195-86fe-4597-933d-93903a61f676	d8826711-1c53-40c3-b444-2c9614f49b6f	102	36	93	0	0	0	0	0	0
BTBD8	284697	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	92612759	92612759	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B9-5155-01A-01D-1589-08	TCGA-B9-5155-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9ca1b195-86fe-4597-933d-93903a61f676	d8826711-1c53-40c3-b444-2c9614f49b6f	163	70	146	0	0	0	0	0	0
CTTNBP2NL	55917	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	112999957	112999957	+	Missense_Mutation	SNP	C	C	G	rs201748043		TCGA-B9-5155-01A-01D-1589-08	TCGA-B9-5155-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9ca1b195-86fe-4597-933d-93903a61f676	d8826711-1c53-40c3-b444-2c9614f49b6f	125	54	92	0	30	13	17	0	0
CCDC19	25790	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	159846354	159846354	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B9-5155-01A-01D-1589-08	TCGA-B9-5155-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9ca1b195-86fe-4597-933d-93903a61f676	d8826711-1c53-40c3-b444-2c9614f49b6f	36	19	36	0	0	0	0	0	0
USF1	7391	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	161011449	161011449	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B9-5155-01A-01D-1589-08	TCGA-B9-5155-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9ca1b195-86fe-4597-933d-93903a61f676	d8826711-1c53-40c3-b444-2c9614f49b6f	77	25	67	0	0	0	0	0	0
NIT1	4817	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	161090529	161090529	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B9-5155-01A-01D-1589-08	TCGA-B9-5155-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9ca1b195-86fe-4597-933d-93903a61f676	d8826711-1c53-40c3-b444-2c9614f49b6f	81	30	75	0	26	13	13	0	0
PRRC2C	23215	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	171553267	171553267	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-B9-5155-01A-01D-1589-08	TCGA-B9-5155-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9ca1b195-86fe-4597-933d-93903a61f676	d8826711-1c53-40c3-b444-2c9614f49b6f	339	150	266	0	32	27	5	0	0
AXDND1	126859	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	179503894	179503894	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B9-5155-01A-01D-1589-08	TCGA-B9-5155-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9ca1b195-86fe-4597-933d-93903a61f676	d8826711-1c53-40c3-b444-2c9614f49b6f	128	52	140	0	1	0	1	0	0
TDRD5	163589	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	179609125	179609129	+	Frame_Shift_Del	DEL	GTGTT	GTGTT	-	novel		TCGA-B9-5155-01A-01D-1589-08	TCGA-B9-5155-10A-01D-1589-08	GTGTT	GTGTT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9ca1b195-86fe-4597-933d-93903a61f676	d8826711-1c53-40c3-b444-2c9614f49b6f	268	75	306	0	0	0	0	0	0
TDRD5	163589	hgsc.bcm.edu	37	1	179609125	179609130	+	In_Frame_Del	DEL	GTGTTC	GTGTTC	-	novel		TCGA-B9-5155-01A-01D-1589-08	TCGA-B9-5155-10A-01D-1589-08	GTGTTC	GTGTTC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9ca1b195-86fe-4597-933d-93903a61f676	d8826711-1c53-40c3-b444-2c9614f49b6f	279	55	312	0	0	0	0	0	0
TDRD5	163589	bcgsc.ca	37	1	179609130	179609130	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B9-5155-01A-01D-1589-08	TCGA-B9-5155-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9ca1b195-86fe-4597-933d-93903a61f676	d8826711-1c53-40c3-b444-2c9614f49b6f	251	78	299	0	0	0	0	0	0
KIAA1614	57710	ucsc.edu	37	1	180904788	180904788	+	Silent	SNP	G	G	A	novel		TCGA-B9-5155-01A-01D-1589-08	TCGA-B9-5155-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9ca1b195-86fe-4597-933d-93903a61f676	d8826711-1c53-40c3-b444-2c9614f49b6f	35	4	34	0	4	4	0	0	0
USH2A	7399	broad.mit.edu;bcgsc.ca	37	1	216138667	216138667	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B9-5155-01A-01D-1589-08	TCGA-B9-5155-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9ca1b195-86fe-4597-933d-93903a61f676	d8826711-1c53-40c3-b444-2c9614f49b6f	166	6	132	0	0	0	0	0	0
CAPN9	10753	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	230907780	230907780	+	Silent	SNP	A	A	G	novel		TCGA-B9-5155-01A-01D-1589-08	TCGA-B9-5155-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9ca1b195-86fe-4597-933d-93903a61f676	d8826711-1c53-40c3-b444-2c9614f49b6f	133	57	145	0	0	0	0	0	0
KLF6	1316	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	3823844	3823844	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B9-5155-01A-01D-1589-08	TCGA-B9-5155-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9ca1b195-86fe-4597-933d-93903a61f676	d8826711-1c53-40c3-b444-2c9614f49b6f	35	20	38	0	1	1	0	0	0
SKIDA1	387640	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	21804183	21804183	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B9-5155-01A-01D-1589-08	TCGA-B9-5155-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9ca1b195-86fe-4597-933d-93903a61f676	d8826711-1c53-40c3-b444-2c9614f49b6f	54	27	47	0	7	4	3	0	0
SKIDA1	387640	hgsc.bcm.edu	37	10	21805486	21805486	+	Silent	SNP	C	C	T	novel		TCGA-B9-5155-01A-01D-1589-08	TCGA-B9-5155-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9ca1b195-86fe-4597-933d-93903a61f676	d8826711-1c53-40c3-b444-2c9614f49b6f	9	6	2	2	0	0	0	0	0
KIAA1217	56243	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	24762791	24762791	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B9-5155-01A-01D-1589-08	TCGA-B9-5155-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9ca1b195-86fe-4597-933d-93903a61f676	d8826711-1c53-40c3-b444-2c9614f49b6f	132	55	143	0	12	8	4	0	0
HERC4	26091	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	69714847	69714847	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B9-5155-01A-01D-1589-08	TCGA-B9-5155-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9ca1b195-86fe-4597-933d-93903a61f676	d8826711-1c53-40c3-b444-2c9614f49b6f	98	28	91	0	26	15	11	0	0
CCAR1	55749	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	70513756	70513756	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B9-5155-01A-01D-1589-08	TCGA-B9-5155-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9ca1b195-86fe-4597-933d-93903a61f676	d8826711-1c53-40c3-b444-2c9614f49b6f	183	82	171	0	29	19	10	0	0
POLR3A	11128	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	79745045	79745045	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B9-5155-01A-01D-1589-08	TCGA-B9-5155-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9ca1b195-86fe-4597-933d-93903a61f676	d8826711-1c53-40c3-b444-2c9614f49b6f	200	75	196	0	6	4	2	0	0
GRK5	2869	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	120967430	120967430	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B9-5155-01A-01D-1589-08	TCGA-B9-5155-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9ca1b195-86fe-4597-933d-93903a61f676	d8826711-1c53-40c3-b444-2c9614f49b6f	29	16	21	0	0	0	0	0	0
MUC6	4588	broad.mit.edu	37	11	1017455	1017455	+	Silent	SNP	C	C	T	novel		TCGA-B9-5155-01A-01D-1589-08	TCGA-B9-5155-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9ca1b195-86fe-4597-933d-93903a61f676	d8826711-1c53-40c3-b444-2c9614f49b6f	1032	11	850	0	0	0	0	0	0
MUC2	4583	hgsc.bcm.edu	37	11	1093116	1093116	+	Silent	SNP	C	C	T	novel		TCGA-B9-5155-01A-01D-1589-08	TCGA-B9-5155-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9ca1b195-86fe-4597-933d-93903a61f676	d8826711-1c53-40c3-b444-2c9614f49b6f	11	3	1	0	0	0	0	0	0
SLC5A12	159963	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	26720065	26720065	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B9-5155-01A-01D-1589-08	TCGA-B9-5155-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9ca1b195-86fe-4597-933d-93903a61f676	d8826711-1c53-40c3-b444-2c9614f49b6f	57	35	43	0	1	0	1	0	0
CAPRIN1	4076	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	34118752	34118752	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B9-5155-01A-01D-1589-08	TCGA-B9-5155-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9ca1b195-86fe-4597-933d-93903a61f676	d8826711-1c53-40c3-b444-2c9614f49b6f	97	45	105	0	0	0	0	0	0
FOLH1	2346	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	49175458	49175458	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-B9-5155-01A-01D-1589-08	TCGA-B9-5155-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9ca1b195-86fe-4597-933d-93903a61f676	d8826711-1c53-40c3-b444-2c9614f49b6f	108	44	95	0	0	0	0	0	0
TBX10	347853	broad.mit.edu;bcgsc.ca	37	11	67400113	67400113	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B9-5155-01A-01D-1589-08	TCGA-B9-5155-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9ca1b195-86fe-4597-933d-93903a61f676	d8826711-1c53-40c3-b444-2c9614f49b6f	188	8	182	0	0	0	0	0	0
C11orf82	220042	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	82642927	82642927	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B9-5155-01A-01D-1589-08	TCGA-B9-5155-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9ca1b195-86fe-4597-933d-93903a61f676	d8826711-1c53-40c3-b444-2c9614f49b6f	257	95	284	1	1	1	0	0	0
MRE11A	4361	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	94224022	94224022	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B9-5155-01A-01D-1589-08	TCGA-B9-5155-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9ca1b195-86fe-4597-933d-93903a61f676	d8826711-1c53-40c3-b444-2c9614f49b6f	174	65	154	0	7	2	5	0	0
DYNC2H1	79659	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	103124155	103124155	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B9-5155-01A-01D-1589-08	TCGA-B9-5155-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9ca1b195-86fe-4597-933d-93903a61f676	d8826711-1c53-40c3-b444-2c9614f49b6f	116	35	95	0	8	4	4	0	0
SLC35F2	54733	hgsc.bcm.edu	37	11	107676236	107676236	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B9-5155-01A-01D-1589-08	TCGA-B9-5155-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9ca1b195-86fe-4597-933d-93903a61f676	d8826711-1c53-40c3-b444-2c9614f49b6f	17	2	19	0	0	0	0	0	0
IL10RA	3587	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	117869597	117869597	+	Silent	SNP	A	A	T	novel		TCGA-B9-5155-01A-01D-1589-08	TCGA-B9-5155-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9ca1b195-86fe-4597-933d-93903a61f676	d8826711-1c53-40c3-b444-2c9614f49b6f	86	31	96	0	2	2	0	0	0
MIR100HG	399959	bcgsc.ca	37	11	122017130	122017130	+	RNA	SNP	A	A	C	novel		TCGA-B9-5155-01A-01D-1589-08	TCGA-B9-5155-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9ca1b195-86fe-4597-933d-93903a61f676	d8826711-1c53-40c3-b444-2c9614f49b6f	26	15	20	0	0	0	0	0	0
HSPA8	3312	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	122930940	122930940	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B9-5155-01A-01D-1589-08	TCGA-B9-5155-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9ca1b195-86fe-4597-933d-93903a61f676	d8826711-1c53-40c3-b444-2c9614f49b6f	109	47	109	0	1822	916	906	0	0
ERC1	23085	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	1219488	1219488	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B9-5155-01A-01D-1589-08	TCGA-B9-5155-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9ca1b195-86fe-4597-933d-93903a61f676	d8826711-1c53-40c3-b444-2c9614f49b6f	110	50	71	0	18	7	11	0	0
CASC1	55259	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	25308273	25308273	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B9-5155-01A-01D-1589-08	TCGA-B9-5155-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9ca1b195-86fe-4597-933d-93903a61f676	d8826711-1c53-40c3-b444-2c9614f49b6f	78	31	71	0	2	0	2	0	0
DIP2B	57609	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	51138542	51138542	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-B9-5155-01A-01D-1589-08	TCGA-B9-5155-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9ca1b195-86fe-4597-933d-93903a61f676	d8826711-1c53-40c3-b444-2c9614f49b6f	89	50	58	0	25	15	10	0	0
DPY19L2	283417	hgsc.bcm.edu;broad.mit.edu	37	12	63994135	63994135	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B9-5155-01A-01D-1589-08	TCGA-B9-5155-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9ca1b195-86fe-4597-933d-93903a61f676	d8826711-1c53-40c3-b444-2c9614f49b6f	185	76	128	0	9	9	0	0	0
MTERFD3	80298	broad.mit.edu	37	12	107372204	107372204	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B9-5155-01A-01D-1589-08	TCGA-B9-5155-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9ca1b195-86fe-4597-933d-93903a61f676	d8826711-1c53-40c3-b444-2c9614f49b6f	320	6	318	0	36	36	0	0	0
ATXN2	6311	hgsc.bcm.edu	37	12	111895017	111895017	+	Splice_Site	SNP	C	C	G	novel		TCGA-B9-5155-01A-01D-1589-08	TCGA-B9-5155-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9ca1b195-86fe-4597-933d-93903a61f676	d8826711-1c53-40c3-b444-2c9614f49b6f	54	3	49	0	0	0	0	0	0
PARP4	143	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	13	25009395	25009395	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-B9-5155-01A-01D-1589-08	TCGA-B9-5155-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9ca1b195-86fe-4597-933d-93903a61f676	d8826711-1c53-40c3-b444-2c9614f49b6f	129	54	137	0	0	0	0	0	0
LRCH1	23143	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	47269134	47269134	+	Silent	SNP	G	G	A	rs201892262		TCGA-B9-5155-01A-01D-1589-08	TCGA-B9-5155-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9ca1b195-86fe-4597-933d-93903a61f676	d8826711-1c53-40c3-b444-2c9614f49b6f	177	86	211	0	37	18	19	0	0
CTAGE11P	647288	bcgsc.ca	37	13	75812808	75812808	+	RNA	SNP	G	G	T	rs149160873	by1000genomes;alternate_allele	TCGA-B9-5155-01A-01D-1589-08	TCGA-B9-5155-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9ca1b195-86fe-4597-933d-93903a61f676	d8826711-1c53-40c3-b444-2c9614f49b6f	60	4	67	0	0	0	0	0	0
COCH	1690	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	31348144	31348144	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B9-5155-01A-01D-1589-08	TCGA-B9-5155-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9ca1b195-86fe-4597-933d-93903a61f676	d8826711-1c53-40c3-b444-2c9614f49b6f	171	77	171	0	0	0	0	0	0
C14orf105	55195	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	57938247	57938247	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B9-5155-01A-01D-1589-08	TCGA-B9-5155-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9ca1b195-86fe-4597-933d-93903a61f676	d8826711-1c53-40c3-b444-2c9614f49b6f	54	27	60	0	0	0	0	0	0
DPF3	8110	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	14	73137911	73137911	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B9-5155-01A-01D-1589-08	TCGA-B9-5155-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9ca1b195-86fe-4597-933d-93903a61f676	d8826711-1c53-40c3-b444-2c9614f49b6f	64	19	43	0	1	1	0	0	0
SERPINA3	12	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	95081284	95081284	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B9-5155-01A-01D-1589-08	TCGA-B9-5155-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9ca1b195-86fe-4597-933d-93903a61f676	d8826711-1c53-40c3-b444-2c9614f49b6f	79	39	61	0	0	0	0	0	0
JAG2	3714	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	105621904	105621904	+	Silent	SNP	C	C	T	novel		TCGA-B9-5155-01A-01D-1589-08	TCGA-B9-5155-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9ca1b195-86fe-4597-933d-93903a61f676	d8826711-1c53-40c3-b444-2c9614f49b6f	155	78	123	0	0	0	0	0	0
LOC646214	0	broad.mit.edu;bcgsc.ca	37	15	21937662	21937662	+	RNA	SNP	A	A	G	novel		TCGA-B9-5155-01A-01D-1589-08	TCGA-B9-5155-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9ca1b195-86fe-4597-933d-93903a61f676	d8826711-1c53-40c3-b444-2c9614f49b6f	106	18	156	0	0	0	0	0	0
LOC727924	0	bcgsc.ca	37	15	22332514	22332514	+	RNA	SNP	A	A	T	novel		TCGA-B9-5155-01A-01D-1589-08	TCGA-B9-5155-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9ca1b195-86fe-4597-933d-93903a61f676	d8826711-1c53-40c3-b444-2c9614f49b6f	349	13	361	0	0	0	0	0	0
RAB8B	51762	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	63548782	63548782	+	Nonsense_Mutation	SNP	A	A	T	rs202115341	alternate_allele	TCGA-B9-5155-01A-01D-1589-08	TCGA-B9-5155-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9ca1b195-86fe-4597-933d-93903a61f676	d8826711-1c53-40c3-b444-2c9614f49b6f	84	42	86	0	0	0	0	0	0
HERC1	8925	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	63953965	63953965	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B9-5155-01A-01D-1589-08	TCGA-B9-5155-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9ca1b195-86fe-4597-933d-93903a61f676	d8826711-1c53-40c3-b444-2c9614f49b6f	134	53	120	0	7	4	3	0	0
BNC1	646	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	83935687	83935687	+	Silent	SNP	C	C	A	novel		TCGA-B9-5155-01A-01D-1589-08	TCGA-B9-5155-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9ca1b195-86fe-4597-933d-93903a61f676	d8826711-1c53-40c3-b444-2c9614f49b6f	155	78	115	0	0	0	0	0	0
DNM1P46	196968	ucsc.edu	37	15	100339960	100339960	+	RNA	SNP	G	G	A	rs12904401		TCGA-B9-5155-01A-01D-1589-08	TCGA-B9-5155-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9ca1b195-86fe-4597-933d-93903a61f676	d8826711-1c53-40c3-b444-2c9614f49b6f	24	5	18	1	77	77	0	0	0
LINS	55180	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	15	101114203	101114205	+	In_Frame_Del	DEL	TGA	TGA	-	novel		TCGA-B9-5155-01A-01D-1589-08	TCGA-B9-5155-10A-01D-1589-08	TGA	TGA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9ca1b195-86fe-4597-933d-93903a61f676	d8826711-1c53-40c3-b444-2c9614f49b6f	67	27	59	0	0	0	0	0	0
MRPS34	65993	hgsc.bcm.edu	37	16	1823047	1823047	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B9-5155-01A-01D-1589-08	TCGA-B9-5155-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9ca1b195-86fe-4597-933d-93903a61f676	d8826711-1c53-40c3-b444-2c9614f49b6f	7	4	4	1	4	0	4	0	0
ZFHX3	463	broad.mit.edu	37	16	72992086	72992086	+	Silent	SNP	G	G	C	novel		TCGA-B9-5155-01A-01D-1589-08	TCGA-B9-5155-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9ca1b195-86fe-4597-933d-93903a61f676	d8826711-1c53-40c3-b444-2c9614f49b6f	92	4	70	0	3	3	0	0	0
KDM6B	23135	broad.mit.edu	37	17	7755520	7755520	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B9-5155-01A-01D-1589-08	TCGA-B9-5155-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9ca1b195-86fe-4597-933d-93903a61f676	d8826711-1c53-40c3-b444-2c9614f49b6f	142	4	87	0	30	28	2	0	0
SMCR8	140775	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	18220177	18220177	+	Silent	SNP	T	T	C	novel		TCGA-B9-5155-01A-01D-1589-08	TCGA-B9-5155-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9ca1b195-86fe-4597-933d-93903a61f676	d8826711-1c53-40c3-b444-2c9614f49b6f	158	50	90	0	9	3	6	0	0
KIAA0100	9703	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	26943748	26943748	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B9-5155-01A-01D-1589-08	TCGA-B9-5155-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9ca1b195-86fe-4597-933d-93903a61f676	d8826711-1c53-40c3-b444-2c9614f49b6f	157	98	89	0	100	36	64	0	0
SSH2	85464	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	27959406	27959406	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B9-5155-01A-01D-1589-08	TCGA-B9-5155-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9ca1b195-86fe-4597-933d-93903a61f676	d8826711-1c53-40c3-b444-2c9614f49b6f	614	355	401	0	39	22	17	0	0
ASIC2	40	hgsc.bcm.edu	37	17	31618972	31618972	+	Silent	SNP	G	G	A	rs200384167		TCGA-B9-5155-01A-01D-1589-08	TCGA-B9-5155-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9ca1b195-86fe-4597-933d-93903a61f676	d8826711-1c53-40c3-b444-2c9614f49b6f	7	3	6	0	0	0	0	0	0
ZNF830	91603	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	33289325	33289325	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B9-5155-01A-01D-1589-08	TCGA-B9-5155-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9ca1b195-86fe-4597-933d-93903a61f676	d8826711-1c53-40c3-b444-2c9614f49b6f	90	55	62	0	30	11	19	0	0
LIG3	3980	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	33310454	33310454	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B9-5155-01A-01D-1589-08	TCGA-B9-5155-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9ca1b195-86fe-4597-933d-93903a61f676	d8826711-1c53-40c3-b444-2c9614f49b6f	66	42	22	0	10	5	5	0	0
SLC35G3	146861	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	33520712	33520712	+	Silent	SNP	C	C	T	novel		TCGA-B9-5155-01A-01D-1589-08	TCGA-B9-5155-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9ca1b195-86fe-4597-933d-93903a61f676	d8826711-1c53-40c3-b444-2c9614f49b6f	240	168	173	0	0	0	0	0	0
BAHCC1	57597	broad.mit.edu;bcgsc.ca	37	17	79411728	79411728	+	Silent	SNP	C	C	T	novel		TCGA-B9-5155-01A-01D-1589-08	TCGA-B9-5155-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9ca1b195-86fe-4597-933d-93903a61f676	d8826711-1c53-40c3-b444-2c9614f49b6f	121	39	82	0	0	0	0	0	0
BAHCC1	57597	broad.mit.edu;bcgsc.ca	37	17	79411738	79411738	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B9-5155-01A-01D-1589-08	TCGA-B9-5155-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9ca1b195-86fe-4597-933d-93903a61f676	d8826711-1c53-40c3-b444-2c9614f49b6f	107	36	68	0	0	0	0	0	0
TCEB3C	162699	broad.mit.edu;bcgsc.ca	37	18	44555040	44555040	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B9-5155-01A-01D-1589-08	TCGA-B9-5155-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9ca1b195-86fe-4597-933d-93903a61f676	d8826711-1c53-40c3-b444-2c9614f49b6f	871	43	734	2	0	0	0	0	0
STK11	6794	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	1220439	1220439	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-B9-5155-01A-01D-1589-08	TCGA-B9-5155-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9ca1b195-86fe-4597-933d-93903a61f676	d8826711-1c53-40c3-b444-2c9614f49b6f	18	9	21	0	33	28	5	0	0
HNRNPM	4670	ucsc.edu	37	19	8527467	8527467	+	Splice_Site	SNP	T	T	G	novel		TCGA-B9-5155-01A-01D-1589-08	TCGA-B9-5155-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9ca1b195-86fe-4597-933d-93903a61f676	d8826711-1c53-40c3-b444-2c9614f49b6f	222	2	234	4	0	0	0	0	0
MUC16	94025	broad.mit.edu	37	19	9066838	9066838	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B9-5155-01A-01D-1589-08	TCGA-B9-5155-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9ca1b195-86fe-4597-933d-93903a61f676	d8826711-1c53-40c3-b444-2c9614f49b6f	167	4	164	0	0	0	0	0	0
EPS15L1	58513	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	16513268	16513268	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B9-5155-01A-01D-1589-08	TCGA-B9-5155-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9ca1b195-86fe-4597-933d-93903a61f676	d8826711-1c53-40c3-b444-2c9614f49b6f	115	51	68	0	35	15	20	0	0
ZNF676	163223	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	22363129	22363129	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B9-5155-01A-01D-1589-08	TCGA-B9-5155-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9ca1b195-86fe-4597-933d-93903a61f676	d8826711-1c53-40c3-b444-2c9614f49b6f	248	103	255	0	0	0	0	0	0
ZNF416	55659	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	58083736	58083736	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B9-5155-01A-01D-1589-08	TCGA-B9-5155-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9ca1b195-86fe-4597-933d-93903a61f676	d8826711-1c53-40c3-b444-2c9614f49b6f	140	65	137	0	3	2	1	0	0
ZNF416	55659	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	58083765	58083765	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B9-5155-01A-01D-1589-08	TCGA-B9-5155-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9ca1b195-86fe-4597-933d-93903a61f676	d8826711-1c53-40c3-b444-2c9614f49b6f	138	64	124	0	6	4	2	0	0
LINC00299	339789	bcgsc.ca	37	2	8178775	8178775	+	RNA	SNP	T	T	A	novel		TCGA-B9-5155-01A-01D-1589-08	TCGA-B9-5155-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9ca1b195-86fe-4597-933d-93903a61f676	d8826711-1c53-40c3-b444-2c9614f49b6f	2448	240	1973	1	0	0	0	0	0
DDX1	1653	broad.mit.edu;bcgsc.ca	37	2	15735617	15735617	+	Silent	SNP	C	C	T	novel		TCGA-B9-5155-01A-01D-1589-08	TCGA-B9-5155-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9ca1b195-86fe-4597-933d-93903a61f676	d8826711-1c53-40c3-b444-2c9614f49b6f	100	7	76	0	0	0	0	0	0
ATAD2B	54454	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	24046400	24046400	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B9-5155-01A-01D-1589-08	TCGA-B9-5155-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9ca1b195-86fe-4597-933d-93903a61f676	d8826711-1c53-40c3-b444-2c9614f49b6f	67	31	64	0	4	2	2	0	0
C2orf44	80304	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	24262142	24262142	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B9-5155-01A-01D-1589-08	TCGA-B9-5155-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9ca1b195-86fe-4597-933d-93903a61f676	d8826711-1c53-40c3-b444-2c9614f49b6f	66	30	49	0	4	1	3	0	0
ASPRV1	151516	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	70188627	70188627	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B9-5155-01A-01D-1589-08	TCGA-B9-5155-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9ca1b195-86fe-4597-933d-93903a61f676	d8826711-1c53-40c3-b444-2c9614f49b6f	58	24	60	0	0	0	0	0	0
THNSL2	55258	broad.mit.edu	37	2	88478333	88478333	+	Silent	SNP	G	G	A	novel		TCGA-B9-5155-01A-01D-1589-08	TCGA-B9-5155-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9ca1b195-86fe-4597-933d-93903a61f676	d8826711-1c53-40c3-b444-2c9614f49b6f	146	4	132	0	79	79	0	0	0
SPOPL	339745	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	139318408	139318408	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B9-5155-01A-01D-1589-08	TCGA-B9-5155-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9ca1b195-86fe-4597-933d-93903a61f676	d8826711-1c53-40c3-b444-2c9614f49b6f	118	58	101	0	5	1	4	0	0
CCDC141	285025	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	179701991	179701991	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B9-5155-01A-01D-1589-08	TCGA-B9-5155-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9ca1b195-86fe-4597-933d-93903a61f676	d8826711-1c53-40c3-b444-2c9614f49b6f	91	37	77	0	0	0	0	0	0
NDUFS1	4719	broad.mit.edu	37	2	207009665	207009665	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B9-5155-01A-01D-1589-08	TCGA-B9-5155-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9ca1b195-86fe-4597-933d-93903a61f676	d8826711-1c53-40c3-b444-2c9614f49b6f	118	4	102	0	73	73	0	0	0
DOCK10	55619	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	225670917	225670917	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B9-5155-01A-01D-1589-08	TCGA-B9-5155-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9ca1b195-86fe-4597-933d-93903a61f676	d8826711-1c53-40c3-b444-2c9614f49b6f	58	28	52	0	0	0	0	0	0
SEL1L2	80343	bcgsc.ca	37	20	13850179	13850179	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B9-5155-01A-01D-1589-08	TCGA-B9-5155-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9ca1b195-86fe-4597-933d-93903a61f676	d8826711-1c53-40c3-b444-2c9614f49b6f	101	5	75	0	0	0	0	0	0
CST5	1473	broad.mit.edu	37	20	23856851	23856851	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B9-5155-01A-01D-1589-08	TCGA-B9-5155-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9ca1b195-86fe-4597-933d-93903a61f676	d8826711-1c53-40c3-b444-2c9614f49b6f	112	4	91	0	0	0	0	0	0
REM1	28954	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	30064536	30064536	+	Silent	SNP	G	G	A	novel		TCGA-B9-5155-01A-01D-1589-08	TCGA-B9-5155-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9ca1b195-86fe-4597-933d-93903a61f676	d8826711-1c53-40c3-b444-2c9614f49b6f	47	27	43	0	0	0	0	0	0
PIGU	128869	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	33163023	33163023	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B9-5155-01A-01D-1589-08	TCGA-B9-5155-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9ca1b195-86fe-4597-933d-93903a61f676	d8826711-1c53-40c3-b444-2c9614f49b6f	47	19	59	0	56	32	24	0	0
TSHZ2	128553	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	20	51871026	51871026	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-B9-5155-01A-01D-1589-08	TCGA-B9-5155-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9ca1b195-86fe-4597-933d-93903a61f676	d8826711-1c53-40c3-b444-2c9614f49b6f	222	105	154	0	0	0	0	0	0
CSTF1	1477	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	54974310	54974310	+	Silent	SNP	T	T	A	novel		TCGA-B9-5155-01A-01D-1589-08	TCGA-B9-5155-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9ca1b195-86fe-4597-933d-93903a61f676	d8826711-1c53-40c3-b444-2c9614f49b6f	134	61	137	0	22	9	13	0	0
KCNJ15	3772	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	21	39671714	39671714	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B9-5155-01A-01D-1589-08	TCGA-B9-5155-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9ca1b195-86fe-4597-933d-93903a61f676	d8826711-1c53-40c3-b444-2c9614f49b6f	70	26	74	0	269	154	115	0	0
CCDC157	550631	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	22	30771620	30771620	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B9-5155-01A-01D-1589-08	TCGA-B9-5155-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9ca1b195-86fe-4597-933d-93903a61f676	d8826711-1c53-40c3-b444-2c9614f49b6f	50	4	40	0	7	6	1	0	0
DDX17	10521	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	22	38881951	38881951	+	Missense_Mutation	SNP	A	A	G	rs144334639		TCGA-B9-5155-01A-01D-1589-08	TCGA-B9-5155-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9ca1b195-86fe-4597-933d-93903a61f676	d8826711-1c53-40c3-b444-2c9614f49b6f	89	41	111	0	106	62	44	0	0
CAND2	23066	hgsc.bcm.edu	37	3	12851676	12851676	+	Missense_Mutation	SNP	G	G	A	rs183581869		TCGA-B9-5155-01A-01D-1589-08	TCGA-B9-5155-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9ca1b195-86fe-4597-933d-93903a61f676	d8826711-1c53-40c3-b444-2c9614f49b6f	9	7	4	1	7	0	7	0	0
GADL1	339896	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	30819676	30819676	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B9-5155-01A-01D-1589-08	TCGA-B9-5155-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9ca1b195-86fe-4597-933d-93903a61f676	d8826711-1c53-40c3-b444-2c9614f49b6f	173	45	107	0	0	0	0	0	0
PLCD1	5333	broad.mit.edu	37	3	38061700	38061700	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B9-5155-01A-01D-1589-08	TCGA-B9-5155-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9ca1b195-86fe-4597-933d-93903a61f676	d8826711-1c53-40c3-b444-2c9614f49b6f	216	4	119	0	66	66	0	0	0
SETD2	29072	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	47158197	47158197	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B9-5155-01A-01D-1589-08	TCGA-B9-5155-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9ca1b195-86fe-4597-933d-93903a61f676	d8826711-1c53-40c3-b444-2c9614f49b6f	188	106	113	0	46	18	28	0	0
USP19	10869	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	49149414	49149414	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B9-5155-01A-01D-1589-08	TCGA-B9-5155-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9ca1b195-86fe-4597-933d-93903a61f676	d8826711-1c53-40c3-b444-2c9614f49b6f	97	39	47	0	69	45	24	0	0
ACOX2	8309	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	58514651	58514651	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B9-5155-01A-01D-1589-08	TCGA-B9-5155-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9ca1b195-86fe-4597-933d-93903a61f676	d8826711-1c53-40c3-b444-2c9614f49b6f	115	48	66	0	18	13	5	0	0
IQCB1	9657	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	121500645	121500645	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B9-5155-01A-01D-1589-08	TCGA-B9-5155-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9ca1b195-86fe-4597-933d-93903a61f676	d8826711-1c53-40c3-b444-2c9614f49b6f	259	153	165	0	35	23	12	0	0
CD86	942	broad.mit.edu	37	3	121822548	121822548	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B9-5155-01A-01D-1589-08	TCGA-B9-5155-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9ca1b195-86fe-4597-933d-93903a61f676	d8826711-1c53-40c3-b444-2c9614f49b6f	265	4	195	0	1	1	0	0	0
FAM86JP	100125556	broad.mit.edu	37	3	125647396	125647396	+	RNA	SNP	T	T	C	novel		TCGA-B9-5155-01A-01D-1589-08	TCGA-B9-5155-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9ca1b195-86fe-4597-933d-93903a61f676	d8826711-1c53-40c3-b444-2c9614f49b6f	254	13	137	1	89	9	80	0	0
H1FX-AS1	339942	bcgsc.ca	37	3	129042096	129042096	+	RNA	SNP	C	C	T	novel		TCGA-B9-5155-01A-01D-1589-08	TCGA-B9-5155-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9ca1b195-86fe-4597-933d-93903a61f676	d8826711-1c53-40c3-b444-2c9614f49b6f	61	41	21	0	0	0	0	0	0
MUC4	4585	broad.mit.edu	37	3	195508343	195508343	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B9-5155-01A-01D-1589-08	TCGA-B9-5155-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9ca1b195-86fe-4597-933d-93903a61f676	d8826711-1c53-40c3-b444-2c9614f49b6f	14	4	12	0	0	0	0	0	0
RAB28	9364	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	13481115	13481115	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-B9-5155-01A-01D-1589-08	TCGA-B9-5155-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9ca1b195-86fe-4597-933d-93903a61f676	d8826711-1c53-40c3-b444-2c9614f49b6f	97	40	69	0	0	0	0	0	0
WDR19	57728	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	39196261	39196261	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B9-5155-01A-01D-1589-08	TCGA-B9-5155-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9ca1b195-86fe-4597-933d-93903a61f676	d8826711-1c53-40c3-b444-2c9614f49b6f	35	5	34	0	7	6	1	0	0
ARSJ	79642	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	114823444	114823444	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B9-5155-01A-01D-1589-08	TCGA-B9-5155-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9ca1b195-86fe-4597-933d-93903a61f676	d8826711-1c53-40c3-b444-2c9614f49b6f	78	33	68	0	10	8	2	0	0
FHDC1	85462	broad.mit.edu	37	4	153884185	153884185	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B9-5155-01A-01D-1589-08	TCGA-B9-5155-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9ca1b195-86fe-4597-933d-93903a61f676	d8826711-1c53-40c3-b444-2c9614f49b6f	163	4	160	0	0	0	0	0	0
SLC45A2	51151	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	33982376	33982376	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B9-5155-01A-01D-1589-08	TCGA-B9-5155-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9ca1b195-86fe-4597-933d-93903a61f676	d8826711-1c53-40c3-b444-2c9614f49b6f	72	22	67	0	1	0	1	0	0
PAIP1	10605	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	43555937	43555937	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-B9-5155-01A-01D-1589-08	TCGA-B9-5155-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9ca1b195-86fe-4597-933d-93903a61f676	d8826711-1c53-40c3-b444-2c9614f49b6f	305	121	234	0	0	0	0	0	0
PPIP5K2	23262	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	102503901	102503901	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B9-5155-01A-01D-1589-08	TCGA-B9-5155-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9ca1b195-86fe-4597-933d-93903a61f676	d8826711-1c53-40c3-b444-2c9614f49b6f	257	117	229	0	21	12	9	0	0
SRP19	6728	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	112200371	112200371	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B9-5155-01A-01D-1589-08	TCGA-B9-5155-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9ca1b195-86fe-4597-933d-93903a61f676	d8826711-1c53-40c3-b444-2c9614f49b6f	105	46	99	0	51	32	19	0	0
BRD8	10902	broad.mit.edu	37	5	137476420	137476420	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B9-5155-01A-01D-1589-08	TCGA-B9-5155-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9ca1b195-86fe-4597-933d-93903a61f676	d8826711-1c53-40c3-b444-2c9614f49b6f	258	5	246	1	0	0	0	0	0
PCDHB16	57717	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	140563850	140563850	+	Silent	SNP	C	C	T	novel		TCGA-B9-5155-01A-01D-1589-08	TCGA-B9-5155-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9ca1b195-86fe-4597-933d-93903a61f676	d8826711-1c53-40c3-b444-2c9614f49b6f	59	44	75	0	24	0	24	0	0
PCDHB10	56126	hgsc.bcm.edu	37	5	140573841	140573841	+	Silent	SNP	C	C	T	novel		TCGA-B9-5155-01A-01D-1589-08	TCGA-B9-5155-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9ca1b195-86fe-4597-933d-93903a61f676	d8826711-1c53-40c3-b444-2c9614f49b6f	155	15	150	0	67	67	0	0	0
RASGEF1C	255426	broad.mit.edu	37	5	179545807	179545807	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B9-5155-01A-01D-1589-08	TCGA-B9-5155-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9ca1b195-86fe-4597-933d-93903a61f676	d8826711-1c53-40c3-b444-2c9614f49b6f	175	5	153	0	3	3	0	0	0
FOXF2	2295	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	1390675	1390675	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B9-5155-01A-01D-1589-08	TCGA-B9-5155-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9ca1b195-86fe-4597-933d-93903a61f676	d8826711-1c53-40c3-b444-2c9614f49b6f	162	66	155	0	0	0	0	0	0
GMPR	2766	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	16254914	16254914	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B9-5155-01A-01D-1589-08	TCGA-B9-5155-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9ca1b195-86fe-4597-933d-93903a61f676	d8826711-1c53-40c3-b444-2c9614f49b6f	199	94	169	0	11	9	2	0	0
RBM24	221662	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	17292212	17292212	+	Silent	SNP	G	G	A	novel		TCGA-B9-5155-01A-01D-1589-08	TCGA-B9-5155-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9ca1b195-86fe-4597-933d-93903a61f676	d8826711-1c53-40c3-b444-2c9614f49b6f	30	10	31	0	11	6	5	0	0
PRRC2A	7916	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	31605276	31605276	+	Silent	SNP	G	G	A	novel		TCGA-B9-5155-01A-01D-1589-08	TCGA-B9-5155-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9ca1b195-86fe-4597-933d-93903a61f676	d8826711-1c53-40c3-b444-2c9614f49b6f	179	77	165	1	135	63	71	1	0
RNF5	6048	broad.mit.edu	37	6	32147442	32147442	+	Silent	SNP	G	G	A	novel		TCGA-B9-5155-01A-01D-1589-08	TCGA-B9-5155-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9ca1b195-86fe-4597-933d-93903a61f676	d8826711-1c53-40c3-b444-2c9614f49b6f	134	4	118	0	75	75	0	0	0
PKHD1	5314	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	51923120	51923120	+	Splice_Site	SNP	C	C	A	novel		TCGA-B9-5155-01A-01D-1589-08	TCGA-B9-5155-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9ca1b195-86fe-4597-933d-93903a61f676	d8826711-1c53-40c3-b444-2c9614f49b6f	139	56	122	1	41	0	41	0	0
DDX43	55510	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	74119027	74119027	+	Silent	SNP	G	G	A	novel		TCGA-B9-5155-01A-01D-1589-08	TCGA-B9-5155-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9ca1b195-86fe-4597-933d-93903a61f676	d8826711-1c53-40c3-b444-2c9614f49b6f	204	102	203	0	0	0	0	0	0
AMD1	262	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	111213404	111213404	+	Silent	SNP	T	T	C	novel		TCGA-B9-5155-01A-01D-1589-08	TCGA-B9-5155-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9ca1b195-86fe-4597-933d-93903a61f676	d8826711-1c53-40c3-b444-2c9614f49b6f	337	170	308	0	0	0	0	0	0
SLC2A12	154091	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	134350343	134350343	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B9-5155-01A-01D-1589-08	TCGA-B9-5155-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9ca1b195-86fe-4597-933d-93903a61f676	d8826711-1c53-40c3-b444-2c9614f49b6f	155	9	119	0	1	1	0	0	0
CLDN12	9069	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	90042218	90042218	+	Silent	SNP	A	A	G	novel		TCGA-B9-5155-01A-01D-1589-08	TCGA-B9-5155-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9ca1b195-86fe-4597-933d-93903a61f676	d8826711-1c53-40c3-b444-2c9614f49b6f	268	88	141	2	61	43	18	0	0
DYNC1I1	1780	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	95668696	95668696	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B9-5155-01A-01D-1589-08	TCGA-B9-5155-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9ca1b195-86fe-4597-933d-93903a61f676	d8826711-1c53-40c3-b444-2c9614f49b6f	184	123	118	0	0	0	0	0	0
DLX5	1749	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	96651541	96651541	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B9-5155-01A-01D-1589-08	TCGA-B9-5155-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9ca1b195-86fe-4597-933d-93903a61f676	d8826711-1c53-40c3-b444-2c9614f49b6f	296	59	231	0	0	0	0	0	0
ATP5J2	9551	broad.mit.edu	37	7	99063764	99063764	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B9-5155-01A-01D-1589-08	TCGA-B9-5155-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9ca1b195-86fe-4597-933d-93903a61f676	d8826711-1c53-40c3-b444-2c9614f49b6f	141	3	97	0	25	25	0	0	0
STAG3	10734	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	99800113	99800113	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B9-5155-01A-01D-1589-08	TCGA-B9-5155-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9ca1b195-86fe-4597-933d-93903a61f676	d8826711-1c53-40c3-b444-2c9614f49b6f	382	242	254	0	6	3	3	0	0
NAPEPLD	222236	broad.mit.edu	37	7	102760174	102760174	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B9-5155-01A-01D-1589-08	TCGA-B9-5155-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9ca1b195-86fe-4597-933d-93903a61f676	d8826711-1c53-40c3-b444-2c9614f49b6f	191	4	111	0	40	39	1	0	0
PSMC2	5701	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	103002482	103002482	+	Silent	SNP	G	G	T	novel		TCGA-B9-5155-01A-01D-1589-08	TCGA-B9-5155-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9ca1b195-86fe-4597-933d-93903a61f676	d8826711-1c53-40c3-b444-2c9614f49b6f	170	60	102	0	103	60	43	0	0
WEE2	494551	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	141408685	141408685	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-B9-5155-01A-01D-1589-08	TCGA-B9-5155-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9ca1b195-86fe-4597-933d-93903a61f676	d8826711-1c53-40c3-b444-2c9614f49b6f	341	193	265	0	0	0	0	0	0
KAT6A	7994	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	41794928	41794928	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B9-5155-01A-01D-1589-08	TCGA-B9-5155-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9ca1b195-86fe-4597-933d-93903a61f676	d8826711-1c53-40c3-b444-2c9614f49b6f	157	64	175	0	13	13	0	0	0
NCOA2	10499	hgsc.bcm.edu	37	8	71082463	71082463	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B9-5155-01A-01D-1589-08	TCGA-B9-5155-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9ca1b195-86fe-4597-933d-93903a61f676	d8826711-1c53-40c3-b444-2c9614f49b6f	20	2	24	0	10	10	0	0	0
CSMD3	114788	broad.mit.edu	37	8	113253969	113253969	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B9-5155-01A-01D-1589-08	TCGA-B9-5155-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9ca1b195-86fe-4597-933d-93903a61f676	d8826711-1c53-40c3-b444-2c9614f49b6f	274	8	221	0	0	0	0	0	0
HAS2	3037	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	122627047	122627047	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-B9-5155-01A-01D-1589-08	TCGA-B9-5155-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9ca1b195-86fe-4597-933d-93903a61f676	d8826711-1c53-40c3-b444-2c9614f49b6f	241	116	196	0	0	0	0	0	0
SLURP1	57152	hgsc.bcm.edu	37	8	143822661	143822661	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B9-5155-01A-01D-1589-08	TCGA-B9-5155-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9ca1b195-86fe-4597-933d-93903a61f676	d8826711-1c53-40c3-b444-2c9614f49b6f	36	2	23	0	0	0	0	0	0
PRSS3	5646	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	33797829	33797829	+	Missense_Mutation	SNP	G	G	A	rs138654302		TCGA-B9-5155-01A-01D-1589-08	TCGA-B9-5155-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9ca1b195-86fe-4597-933d-93903a61f676	d8826711-1c53-40c3-b444-2c9614f49b6f	131	41	94	1	1	1	0	0	0
CCIN	881	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	9	36169599	36169599	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B9-5155-01A-01D-1589-08	TCGA-B9-5155-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9ca1b195-86fe-4597-933d-93903a61f676	d8826711-1c53-40c3-b444-2c9614f49b6f	101	10	67	0	0	0	0	0	0
PTCH1	5727	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	98229471	98229471	+	Silent	SNP	C	C	A	novel		TCGA-B9-5155-01A-01D-1589-08	TCGA-B9-5155-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9ca1b195-86fe-4597-933d-93903a61f676	d8826711-1c53-40c3-b444-2c9614f49b6f	152	64	118	0	4	3	1	0	0
TMEM246	84302	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	104238602	104238602	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B9-5155-01A-01D-1589-08	TCGA-B9-5155-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9ca1b195-86fe-4597-933d-93903a61f676	d8826711-1c53-40c3-b444-2c9614f49b6f	159	72	152	0	61	35	25	0	1
C5	727	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	123742457	123742457	+	Silent	SNP	A	A	G	novel		TCGA-B9-5155-01A-01D-1589-08	TCGA-B9-5155-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9ca1b195-86fe-4597-933d-93903a61f676	d8826711-1c53-40c3-b444-2c9614f49b6f	103	42	93	0	1	1	0	0	0
BRD3	8019	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	136915699	136915699	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B9-5155-01A-01D-1589-08	TCGA-B9-5155-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9ca1b195-86fe-4597-933d-93903a61f676	d8826711-1c53-40c3-b444-2c9614f49b6f	69	34	76	0	0	0	0	0	0
SEC16A	9919	hgsc.bcm.edu	37	9	139370224	139370224	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B9-5155-01A-01D-1589-08	TCGA-B9-5155-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9ca1b195-86fe-4597-933d-93903a61f676	d8826711-1c53-40c3-b444-2c9614f49b6f	13	10	9	0	16	4	12	0	0
NOTCH1	4851	hgsc.bcm.edu	37	9	139399213	139399213	+	Silent	SNP	G	G	A	novel		TCGA-B9-5155-01A-01D-1589-08	TCGA-B9-5155-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9ca1b195-86fe-4597-933d-93903a61f676	d8826711-1c53-40c3-b444-2c9614f49b6f	7	3	2	1	7	5	2	0	0
TUBB4B	10383	ucsc.edu	37	9	140137426	140137426	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B9-5155-01A-01D-1589-08	TCGA-B9-5155-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9ca1b195-86fe-4597-933d-93903a61f676	d8826711-1c53-40c3-b444-2c9614f49b6f	38	5	47	1	676	559	114	0	3
PGBD2	267002	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	249211266	249211267	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-B9-5155-01A-01D-1589-08	TCGA-B9-5155-10A-01D-1589-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9ca1b195-86fe-4597-933d-93903a61f676	d8826711-1c53-40c3-b444-2c9614f49b6f	241	105	213	0	0	0	0	0	0
MFGE8	4240	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	15	89449052	89449053	+	Frame_Shift_Ins	INS	-	-	AA	novel		TCGA-B9-5155-01A-01D-1589-08	TCGA-B9-5155-10A-01D-1589-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9ca1b195-86fe-4597-933d-93903a61f676	d8826711-1c53-40c3-b444-2c9614f49b6f	186	70	137	0	0	0	0	0	0
NAGLU	4669	broad.mit.edu	37	17	40693013	40693014	+	Frame_Shift_Ins	INS	-	-	TT	novel		TCGA-B9-5155-01A-01D-1589-08	TCGA-B9-5155-10A-01D-1589-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9ca1b195-86fe-4597-933d-93903a61f676	d8826711-1c53-40c3-b444-2c9614f49b6f	329	16	194	0	0	0	0	0	0
PKP4	8502	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	159537000	159537001	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-B9-5155-01A-01D-1589-08	TCGA-B9-5155-10A-01D-1589-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9ca1b195-86fe-4597-933d-93903a61f676	d8826711-1c53-40c3-b444-2c9614f49b6f	173	88	138	0	0	0	0	0	0
VPS9D1	9605	ucsc.edu	37	16	89785598	89785599	+	Missense_Mutation	DNP	AA	AA	TG	novel		TCGA-B9-5155-01A-01D-1589-08	TCGA-B9-5155-10A-01D-1589-08	AA	AA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9ca1b195-86fe-4597-933d-93903a61f676	d8826711-1c53-40c3-b444-2c9614f49b6f	42	19	27	0	0	0	0	0	0
