Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	TTotCov	TVarCov	NTotCov	NVarCov	Trna_tot	Trna_ref	Trna_var	Trna_alt1	Trna_alt2
LRRC47	57470	ucsc.edu	37	1	3701651	3701651	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	36	4	91	1	1	1	0	0	0
CHD5	26038	ucsc.edu	37	1	6190341	6190341	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	37	4	92	0	0	0	0	0	0
NOL9	79707	ucsc.edu	37	1	6610658	6610658	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	41	4	87	0	1	1	0	0	0
KIF1B	23095	bcgsc.ca	37	1	10384007	10384007	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	90	8	162	2	2	2	0	0	0
CASZ1	54897	ucsc.edu	37	1	10703057	10703057	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	26	4	53	1	0	0	0	0	0
SPEN	23013	ucsc.edu	37	1	16237622	16237622	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	25	4	47	0	2	2	0	0	0
CLCNKB	1188	ucsc.edu	37	1	16373150	16373150	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	37	4	79	0	0	0	0	0	0
HP1BP3	50809	ucsc.edu	37	1	21106355	21106355	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	42	4	78	1	18	18	0	0	0
ALPL	249	ucsc.edu	37	1	21889717	21889717	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	32	4	77	2	5	3	0	0	2
RAP1GAP	5909	ucsc.edu	37	1	21940199	21940199	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	42	4	95	0	0	0	0	0	0
HSPG2	3339	ucsc.edu	37	1	22161344	22161344	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	33	5	62	1	37	37	0	0	0
HSPG2	3339	ucsc.edu	37	1	22216561	22216561	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	47	4	91	0	0	0	0	0	0
MYOM3	127294	ucsc.edu	37	1	24408559	24408559	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	34	4	49	0	20	20	0	0	0
GRHL3	57822	ucsc.edu	37	1	24663589	24663589	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	21	4	55	0	0	0	0	0	0
SEPN1	57190	bcgsc.ca	37	1	26127632	26127632	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	43	6	97	0	19	19	0	0	0
EXTL1	2134	ucsc.edu	37	1	26357705	26357705	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	44	4	86	0	0	0	0	0	0
CATSPER4	378807	ucsc.edu	37	1	26529007	26529007	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	18	4	28	0	0	0	0	0	0
MIR1976	100302190	ucsc.edu	37	1	26881040	26881040	+	RNA	SNP	G	G	T	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	44	4	94	1	0	0	0	0	0
THEMIS2	9473	ucsc.edu	37	1	28209407	28209407	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	63	6	94	1	4	4	0	0	0
SMPDL3B	27293	ucsc.edu	37	1	28279869	28279869	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	25	4	69	0	0	0	0	0	0
MED18	54797	ucsc.edu	37	1	28661465	28661465	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	28	5	53	1	9	9	0	0	0
PHACTR4	65979	bcgsc.ca	37	1	28800532	28800532	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	78	7	166	2	10	10	0	0	0
EPB41	2035	ucsc.edu	37	1	29359690	29359690	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	51	5	85	1	7	6	1	0	0
BSDC1	55108	ucsc.edu	37	1	32846847	32846847	+	Nonsense_Mutation	SNP	G	G	T	rs142951865	byfrequency;alternate_allele	TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	11	4	77	0	36	36	0	0	0
ZSCAN20	7579	ucsc.edu	37	1	33959837	33959837	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	36	4	67	0	1	1	0	0	0
CSMD2	114784	ucsc.edu	37	1	34164353	34164353	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	37	5	95	0	0	0	0	0	0
CSMD2	114784	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	34180229	34180229	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	106	71	302	0	0	0	0	0	0
GJB5	2709	ucsc.edu	37	1	35223623	35223623	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	46	4	68	0	1	1	0	0	0
PPIE	10450	ucsc.edu	37	1	40207593	40207593	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	41	5	79	1	0	0	0	0	0
NFYC	4802	ucsc.edu	37	1	41232340	41232340	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	37	4	72	1	32	32	0	0	0
HIVEP3	59269	ucsc.edu	37	1	42041321	42041321	+	Missense_Mutation	SNP	C	C	A	rs150593757	alternate_allele	TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	49	5	102	1	1	1	0	0	0
SZT2	23334	ucsc.edu	37	1	43896734	43896734	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	43	4	92	0	1	1	0	0	0
BEST4	266675	ucsc.edu	37	1	45250840	45250840	+	Silent	SNP	C	C	A	rs140372677	byfrequency;alternate_allele	TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	33	4	94	1	0	0	0	0	0
CYP4A11	1579	ucsc.edu	37	1	47402440	47402440	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	36	4	77	2	3	3	0	0	0
CYP4X1	260293	ucsc.edu	37	1	47512254	47512254	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	53	5	99	0	1	1	0	0	0
EPS15	2060	ucsc.edu	37	1	51930946	51930946	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	28	4	59	0	0	0	0	0	0
CPT2	1376	ucsc.edu	37	1	53675875	53675875	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	33	4	65	0	21	21	0	0	0
TMEM59	9528	ucsc.edu	37	1	54518713	54518713	+	Missense_Mutation	SNP	C	C	A	rs11539457	alternate_allele	TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	36	4	81	1	130	130	0	0	0
FGGY	55277	ucsc.edu	37	1	60107002	60107002	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	40	4	75	1	3	3	0	0	0
DOCK7	85440	ucsc.edu	37	1	62979154	62979154	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	37	4	87	1	0	0	0	0	0
MIER1	57708	ucsc.edu	37	1	67438579	67438579	+	Splice_Site	SNP	G	G	T	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	31	4	56	0	0	0	0	0	0
MIER1	57708	ucsc.edu	37	1	67447523	67447523	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	39	5	75	0	14	14	0	0	0
SLC35D1	23169	ucsc.edu;bcgsc.ca	37	1	67470040	67470040	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	63	7	107	0	6	6	0	0	0
IL12RB2	3595	ucsc.edu	37	1	67845776	67845776	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	38	4	59	0	0	0	0	0	0
IL12RB2	3595	ucsc.edu	37	1	67861451	67861451	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	47	5	82	0	0	0	0	0	0
AK5	26289	ucsc.edu	37	1	77763595	77763595	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	40	4	79	0	2	2	0	0	0
FUBP1	8880	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	78444626	78444626	+	Silent	SNP	G	G	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	42	27	90	1	0	0	0	0	0
MCOLN2	255231	ucsc.edu	37	1	85418009	85418009	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	31	4	63	0	0	0	0	0	0
WDR63	126820	ucsc.edu	37	1	85548066	85548066	+	Missense_Mutation	SNP	G	G	T	rs143362473		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	41	5	52	0	0	0	0	0	0
DDAH1	23576	ucsc.edu	37	1	85817189	85817189	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	44	4	87	0	0	0	0	0	0
COL24A1	255631	ucsc.edu	37	1	86591688	86591688	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	39	4	82	0	0	0	0	0	0
CCDC18	343099	ucsc.edu;bcgsc.ca	37	1	93676443	93676443	+	Missense_Mutation	SNP	G	G	T	rs150497461	alternate_allele	TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	52	7	74	0	0	0	0	0	0
DPYD	1806	ucsc.edu	37	1	98015243	98015243	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	32	4	53	1	5	5	0	0	0
PALMD	54873	ucsc.edu	37	1	100155030	100155030	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	33	4	56	0	4	4	0	0	0
DBT	1629	ucsc.edu	37	1	100680441	100680441	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	43	5	85	0	14	14	0	0	0
STXBP3	6814	bcgsc.ca	37	1	109340828	109340828	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	121	8	196	1	53	53	0	0	0
ATXN7L2	127002	ucsc.edu	37	1	110030403	110030403	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	36	4	48	0	5	5	0	0	0
GPR61	83873	ucsc.edu	37	1	110085747	110085747	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	37	4	81	0	0	0	0	0	0
KCNA2	3737	ucsc.edu	37	1	111147076	111147076	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	40	4	47	0	0	0	0	0	0
DENND2D	79961	ucsc.edu	37	1	111734886	111734886	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	25	4	64	2	36	36	0	0	0
LRIG2	9860	ucsc.edu	37	1	113658956	113658956	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	42	4	77	1	3	3	0	0	0
RSBN1	54665	ucsc.edu	37	1	114354340	114354340	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	45	5	55	0	0	0	0	0	0
HIPK1	204851	ucsc.edu	37	1	114514487	114514487	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	42	4	84	1	10	10	0	0	0
CSDE1	7812	bcgsc.ca	37	1	115282468	115282468	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	368	15	707	1	74	74	0	0	0
CD2	914	ucsc.edu	37	1	117307105	117307105	+	Splice_Site	SNP	G	G	T	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	40	4	85	0	0	0	0	0	0
RPRD2	23248	ucsc.edu	37	1	150445430	150445430	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	35	5	32	0	95	95	0	0	0
ENSA	2029	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	150601936	150601936	+	Missense_Mutation	SNP	T	T	G	rs148754482	byfrequency;alternate_allele	TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	76	35	108	0	122	60	61	1	0
HORMAD1	84072	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	150689613	150689613	+	Splice_Site	SNP	C	C	T	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	71	25	95	0	0	0	0	0	0
ARNT	405	ucsc.edu	37	1	150790507	150790507	+	Splice_Site	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	36	4	28	0	0	0	0	0	0
POGZ	23126	bcgsc.ca	37	1	151396611	151396611	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	160	9	175	2	9	9	0	0	0
UBAP2L	9898	ucsc.edu	37	1	154233568	154233568	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	36	4	36	0	189	189	0	0	0
THBS3	7059	ucsc.edu	37	1	155176116	155176116	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	41	4	57	1	12	11	0	0	1
RAB25	57111	bcgsc.ca	37	1	156035749	156035749	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	111	8	115	0	0	0	0	0	0
TMEM79	84283	ucsc.edu	37	1	156255158	156255158	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	40	4	83	0	3	3	0	0	0
FCRL5	83416	ucsc.edu	37	1	157509098	157509098	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	28	4	46	0	0	0	0	0	0
PPOX	5498	ucsc.edu	37	1	161138359	161138359	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	72	7	75	1	0	0	0	0	0
SELL	6402	ucsc.edu	37	1	169680637	169680637	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	40	4	36	0	0	0	0	0	0
FMO2	2327	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	171174553	171174553	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	52	15	51	0	7	6	1	0	0
DHX9	1660	bcgsc.ca	37	1	182856242	182856242	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	174	10	177	3	206	206	0	0	0
SMG7	9887	ucsc.edu	37	1	183521056	183521056	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	43	4	41	0	52	52	0	0	0
PTPRC	5788	bcgsc.ca	37	1	198665917	198665917	+	Silent	SNP	C	C	A	rs17612648	byfrequency;alternate_allele	TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	119	7	142	1	1	1	0	0	0
C1orf106	55765	bcgsc.ca	37	1	200880633	200880633	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	306	13	304	2	41	41	0	0	0
NUAK2	81788	ucsc.edu	37	1	205273071	205273071	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	37	4	35	0	47	47	0	0	0
LAMB3	3914	hgsc.bcm.edu	37	1	209801450	209801450	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	15	3	12	0	17	17	0	0	0
DTL	51514	bcgsc.ca	37	1	212274117	212274117	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	98	9	102	1	5	5	0	0	0
LBR	3930	bcgsc.ca	37	1	225611726	225611726	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	645	22	586	7	8	8	0	0	0
KIAA1804	0	bcgsc.ca	37	1	233507888	233507888	+	Silent	SNP	C	C	A	rs201445057	alternate_allele	TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	88	7	99	1	7	7	0	0	0
C1orf101	257044	bcgsc.ca	37	1	244724362	244724362	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	147	9	146	2	0	0	0	0	0
HNRNPU	3192	bcgsc.ca	37	1	245019785	245019785	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	213	11	224	2	420	420	0	0	0
PITRM1	10531	bcgsc.ca	37	10	3189775	3189775	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	218	12	285	3	0	0	0	0	0
NMT2	9397	hgsc.bcm.edu	37	10	15154953	15154953	+	Missense_Mutation	SNP	C	C	A	rs201047504	alternate_allele	TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	121	8	144	2	0	0	0	0	0
DNAJC1	64215	ucsc.edu	37	10	22218012	22218012	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	43	4	49	0	43	43	0	0	0
THNSL1	79896	bcgsc.ca	37	10	25313672	25313672	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	145	10	136	3	27	27	0	0	0
BMS1	9790	ucsc.edu	37	10	43315737	43315737	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	112	6	117	0	128	84	44	0	0
RET	5979	ucsc.edu	37	10	43613871	43613871	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	33	4	66	0	0	0	0	0	0
OR13A1	79290	ucsc.edu;bcgsc.ca	37	10	45799337	45799337	+	Silent	SNP	C	C	A	rs144324031	byfrequency;alternate_allele	TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	73	7	88	1	0	0	0	0	0
SLC16A9	220963	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	61413807	61413807	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	77	29	55	0	140	67	73	0	0
CCAR1	55749	ucsc.edu;bcgsc.ca	37	10	70506938	70506938	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	45	7	39	0	15	15	0	0	0
PALD1	27143	ucsc.edu	37	10	72294224	72294224	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	35	4	34	0	1	1	0	0	0
CDH23	64072	ucsc.edu	37	10	73461803	73461803	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	53	5	71	1	1	1	0	0	0
MICU1	10367	ucsc.edu	37	10	74267970	74267970	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	17	4	22	0	46	46	0	0	0
MCU	90550	ucsc.edu	37	10	74628612	74628612	+	Silent	SNP	C	C	A	rs145860328	alternate_allele	TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	42	4	43	0	0	0	0	0	0
ATAD1	84896	bcgsc.ca	37	10	89536109	89536109	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	245	12	245	5	69	69	0	0	0
LIPN	643418	ucsc.edu	37	10	90537949	90537949	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	36	4	30	0	0	0	0	0	0
PDE6C	5146	bcgsc.ca	37	10	95372866	95372866	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	92	9	88	1	0	0	0	0	0
PLCE1	51196	bcgsc.ca	37	10	96014686	96014686	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	261	12	284	1	2	2	0	0	0
PDLIM1	9124	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	96998413	96998413	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	66	26	64	0	133	54	79	0	0
ENTPD1-AS1	0	broad.mit.edu;bcgsc.ca	37	10	97607150	97607150	+	RNA	DEL	T	T	-	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	38	17	59	0	0	0	0	0	0
HPSE2	60495	bcgsc.ca	37	10	100453688	100453688	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	152	9	195	2	0	0	0	0	0
DNMBP	23268	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	101646325	101646325	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	236	80	256	0	6	5	1	0	0
SLK	9748	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	105750528	105750528	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	69	29	75	0	7	6	1	0	0
PDCD4	27250	bcgsc.ca	37	10	112641152	112641152	+	Silent	SNP	C	C	A	rs181745202	alternate_allele	TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	184	10	161	2	27	27	0	0	0
PNLIPRP2	5408	ucsc.edu	37	10	118389557	118389557	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	28	4	22	0	0	0	0	0	0
GRK5	2869	ucsc.edu	37	10	121203236	121203236	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	26	4	31	0	1	1	0	0	0
GRK5	2869	bcgsc.ca	37	10	121212715	121212715	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	140	8	167	2	4	4	0	0	0
TACC2	10579	ucsc.edu	37	10	123970628	123970628	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	40	4	55	0	4	4	0	0	0
C10orf88	80007	bcgsc.ca	37	10	124697659	124697659	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	114	8	102	1	10	10	0	0	0
CTBP2	1488	ucsc.edu	37	10	126716255	126716255	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	32	4	29	0	0	0	0	0	0
PTPRE	5791	bcgsc.ca	37	10	129871607	129871607	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	100	9	83	0	0	0	0	0	0
LRRC27	80313	bcgsc.ca	37	10	134147171	134147171	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	117	8	94	1	19	19	0	0	0
LRRC27	80313	bcgsc.ca	37	10	134147228	134147228	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	96	8	101	0	0	0	0	0	0
CALY	50632	ucsc.edu	37	10	135141492	135141492	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	17	4	31	0	0	0	0	0	0
MUC5B	727897	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	1247945	1247945	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	36	7	37	0	0	0	0	0	0
MUC5B	727897	ucsc.edu	37	11	1275386	1275386	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	47	5	52	1	0	0	0	0	0
MUC5B	727897	ucsc.edu	37	11	1275998	1275998	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	33	4	45	0	0	0	0	0	0
LSP1	4046	ucsc.edu	37	11	1874426	1874426	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	52	5	34	0	0	0	0	0	0
TSSC4	10078	ucsc.edu	37	11	2424163	2424163	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	30	4	41	0	26	26	0	0	0
OR2AG1	144125	ucsc.edu	37	11	6807219	6807219	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	36	4	47	0	0	0	0	0	0
CTR9	9646	ucsc.edu	37	11	10786221	10786221	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	40	4	40	0	12	12	0	0	0
TPH1	7166	bcgsc.ca	37	11	18050857	18050857	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	459	17	418	5	0	0	0	0	0
NAV2	89797	bcgsc.ca	37	11	20113855	20113855	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	203	10	177	1	6	6	0	0	0
KIF18A	81930	bcgsc.ca	37	11	28113005	28113005	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	181	11	165	2	1	1	0	0	0
MPPED2	744	ucsc.edu	37	11	30439076	30439076	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	57	6	63	0	0	0	0	0	0
COMMD9	29099	bcgsc.ca	37	11	36296298	36296298	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	85	7	105	1	94	94	0	0	0
ALX4	60529	ucsc.edu	37	11	44286728	44286728	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	42	4	32	0	0	0	0	0	0
PEX16	9409	bcgsc.ca	37	11	45937816	45937816	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	314	12	311	4	56	56	0	0	0
MADD	8567	bcgsc.ca	37	11	47308052	47308052	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	140	9	176	1	7	7	0	0	0
NUP160	23279	bcgsc.ca	37	11	47869465	47869465	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	123	9	121	2	9	9	0	0	0
OR8I2	120586	bcgsc.ca	37	11	55861049	55861049	+	Missense_Mutation	SNP	G	G	T	rs183167361	alternate_allele	TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	121	8	200	1	0	0	0	0	0
SLC43A3	29015	ucsc.edu	37	11	57175322	57175322	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	40	4	78	0	4	4	0	0	0
TIMM10	26519	ucsc.edu	37	11	57297648	57297648	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	35	4	109	0	102	102	0	0	0
DDB1	1642	ucsc.edu	37	11	61081072	61081072	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	51	5	111	1	65	65	0	0	0
DDB1	1642	ucsc.edu	37	11	61090508	61090508	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	35	4	39	0	49	48	1	0	0
RAB3IL1	5866	ucsc.edu	37	11	61675086	61675086	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	25	4	65	0	15	15	0	0	0
SCGB1D1	10648	ucsc.edu	37	11	61957809	61957809	+	Missense_Mutation	SNP	G	G	T	rs61999260	byfrequency;alternate_allele	TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	32	4	59	0	0	0	0	0	0
BSCL2	26580	ucsc.edu	37	11	62462126	62462126	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	33	4	47	0	84	84	0	0	0
SLC22A25	387601	ucsc.edu	37	11	62933633	62933633	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	41	6	80	0	0	0	0	0	0
CCDC88B	283234	ucsc.edu	37	11	64124549	64124549	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	43	4	93	1	54	54	0	0	0
SLC22A12	116085	ucsc.edu	37	11	64359225	64359225	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	36	4	50	0	33	33	0	0	0
ATG2A	23130	ucsc.edu	37	11	64678729	64678729	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	38	4	102	0	13	13	0	0	0
POLA2	23649	ucsc.edu	37	11	65049171	65049171	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	41	4	87	0	1	1	0	0	0
EHBP1L1	254102	ucsc.edu	37	11	65350638	65350638	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	16	4	53	0	10	10	0	0	0
PCNXL3	399909	ucsc.edu	37	11	65386387	65386387	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	17	4	25	0	13	13	0	0	0
PCNXL3	399909	ucsc.edu	37	11	65396167	65396167	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	38	4	55	0	0	0	0	0	0
RELA	5970	ucsc.edu	37	11	65429256	65429256	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	41	4	64	0	33	33	0	0	0
SPTBN2	6712	ucsc.edu	37	11	66458942	66458942	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	27	4	40	0	9	9	0	0	0
CORO1B	57175	ucsc.edu	37	11	67210004	67210004	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	31	4	50	0	119	119	0	0	0
FADD	8772	ucsc.edu	37	11	70052566	70052566	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	24	4	44	0	54	54	0	0	0
PRKRIR	5612	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	76063689	76063689	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	29	21	54	0	9	2	7	0	0
GAB2	9846	ucsc.edu	37	11	77932791	77932791	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	58	6	103	0	3	3	0	0	0
PCF11	51585	ucsc.edu	37	11	82877253	82877253	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	24	4	46	0	6	6	0	0	0
CREBZF	58487	ucsc.edu	37	11	85375436	85375436	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	31	4	53	0	23	23	0	0	0
SYTL2	54843	ucsc.edu	37	11	85447592	85447592	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	30	4	74	1	7	7	0	0	0
ME3	10873	ucsc.edu	37	11	86158190	86158190	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	42	4	70	0	8	8	0	0	0
SLC36A4	120103	ucsc.edu	37	11	92896029	92896029	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	28	4	55	0	0	0	0	0	0
PIWIL4	143689	ucsc.edu	37	11	94301931	94301931	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	43	6	57	2	0	0	0	0	0
SESN3	143686	ucsc.edu	37	11	94911939	94911939	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	44	5	83	0	2	2	0	0	0
ATM	472	ucsc.edu	37	11	108168091	108168091	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	35	4	65	0	2	2	0	0	0
TTC12	54970	ucsc.edu	37	11	113205744	113205744	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	30	4	55	0	10	10	0	0	0
ANKK1	255239	ucsc.edu	37	11	113268058	113268058	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	34	4	49	0	0	0	0	0	0
APOC3	345	ucsc.edu	37	11	116703565	116703565	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	51	5	104	0	0	0	0	0	0
SIK3	23387	bcgsc.ca	37	11	116744636	116744636	+	Missense_Mutation	SNP	C	C	A	rs77046570	by1000genomes;alternate_allele	TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	97	8	167	0	7	7	0	0	0
CD3G	917	ucsc.edu	37	11	118220553	118220553	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	28	5	57	0	0	0	0	0	0
DDX6	1656	ucsc.edu	37	11	118629483	118629483	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	44	4	57	0	0	0	0	0	0
CXCR5	643	ucsc.edu	37	11	118764764	118764764	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	36	5	73	2	0	0	0	0	0
C2CD2L	9854	ucsc.edu	37	11	118986958	118986958	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	26	5	66	0	9	9	0	0	0
ARHGEF12	23365	ucsc.edu	37	11	120351999	120351999	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	43	5	99	1	38	36	0	0	2
TECTA	7007	ucsc.edu	37	11	120976547	120976547	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	39	4	62	0	0	0	0	0	0
CHEK1	1111	ucsc.edu	37	11	125499298	125499298	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	54	5	72	0	0	0	0	0	0
CDON	50937	ucsc.edu	37	11	125867175	125867175	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	38	4	90	0	2	2	0	0	0
CDON	50937	ucsc.edu	37	11	125891226	125891226	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	39	4	76	0	1	1	0	0	0
RPUSD4	84881	ucsc.edu	37	11	126073438	126073438	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	34	4	80	0	7	7	0	0	0
DCPS	28960	ucsc.edu	37	11	126176624	126176624	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	34	4	44	0	14	14	0	0	0
NFRKB	4798	bcgsc.ca	37	11	129747250	129747250	+	Silent	SNP	C	C	A	rs142024452	alternate_allele	TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	167	9	295	4	3	3	0	0	0
GLB1L3	112937	ucsc.edu	37	11	134179627	134179627	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	23	4	32	0	0	0	0	0	0
EFCAB4B	84766	ucsc.edu	37	12	3768748	3768748	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	47	5	47	0	0	0	0	0	0
FGF23	8074	ucsc.edu;bcgsc.ca	37	12	4479633	4479633	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	51	8	48	0	0	0	0	0	0
VWF	7450	bcgsc.ca	37	12	6220072	6220072	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	194	10	200	1	12	12	0	0	0
NOP2	4839	ucsc.edu	37	12	6673058	6673058	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	34	4	31	0	0	0	0	0	0
GPR162	27239	ucsc.edu	37	12	6933506	6933506	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	37	4	65	0	3	3	0	0	0
NECAP1	25977	bcgsc.ca	37	12	8245633	8245633	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	155	9	234	1	9	9	0	0	0
CSDA	8531	bcgsc.ca	37	12	10865884	10865884	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	181	10	197	3	427	427	0	0	0
PLCZ1	89869	ucsc.edu	37	12	18849163	18849163	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	31	4	34	0	0	0	0	0	0
BCAT1	586	ucsc.edu	37	12	24985765	24985765	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	34	4	30	0	3	3	0	0	0
PPFIBP1	8496	bcgsc.ca	37	12	27835585	27835585	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	237	14	214	0	99	99	0	0	0
CNTN1	1272	bcgsc.ca	37	12	41323784	41323784	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	251	13	199	1	0	0	0	0	0
SLC38A1	81539	ucsc.edu	37	12	46600980	46600980	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	47	5	53	0	39	39	0	0	0
SLC38A2	54407	bcgsc.ca	37	12	46764985	46764985	+	Missense_Mutation	SNP	G	G	T	rs137856224		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	165	10	212	1	47	47	0	0	0
RPAP3	79657	bcgsc.ca	37	12	48062864	48062864	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	193	11	193	0	31	31	0	0	0
MLL2	8085	broad.mit.edu	37	12	49436618	49436618	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	61	3	97	0	8	8	0	0	0
RACGAP1	29127	ucsc.edu	37	12	50392978	50392978	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	45	5	55	1	10	10	0	0	0
DIP2B	57609	hgsc.bcm.edu;bcgsc.ca	37	12	51019819	51019819	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	142	10	128	2	0	0	0	0	0
KRT82	3888	ucsc.edu	37	12	52799986	52799986	+	Silent	SNP	G	G	T	rs202034583	alternate_allele	TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	26	4	24	0	0	0	0	0	0
KRT6B	3854	bcgsc.ca	37	12	52841576	52841576	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	154	10	165	1	1	1	0	0	0
KRT74	121391	ucsc.edu	37	12	52964483	52964483	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	44	4	58	0	0	0	0	0	0
TENC1	23371	ucsc.edu	37	12	53454202	53454202	+	Silent	SNP	G	G	T	rs113627018	alternate_allele	TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	42	4	51	0	27	27	0	0	0
TESPA1	9840	ucsc.edu	37	12	55356915	55356915	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	37	4	44	0	1	1	0	0	0
ITGA7	3679	ucsc.edu	37	12	56087894	56087894	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	33	4	46	0	0	0	0	0	0
NACA	4666	ucsc.edu	37	12	57113510	57113510	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	52	5	54	0	0	0	0	0	0
GLI1	2735	ucsc.edu;bcgsc.ca	37	12	57863448	57863448	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	49	6	61	0	0	0	0	0	0
MON2	23041	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	62959064	62959064	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	199	91	227	1	14	6	8	0	0
MON2	23041	bcgsc.ca	37	12	62986474	62986474	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	124	9	127	0	17	17	0	0	0
CAND1	55832	ucsc.edu	37	12	67701243	67701243	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	31	4	38	0	61	61	0	0	0
CCER1	196477	ucsc.edu	37	12	91348257	91348257	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	39	4	28	0	0	0	0	0	0
LUM	4060	ucsc.edu	37	12	91502727	91502727	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	41	4	40	0	1	1	0	0	0
SLC25A3	5250	bcgsc.ca	37	12	98995169	98995169	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	172	11	183	0	987	987	0	0	0
ANKS1B	56899	bcgsc.ca	37	12	99194839	99194839	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	31	5	35	0	2	2	0	0	0
PMCH	5367	bcgsc.ca	37	12	102590450	102590450	+	Silent	SNP	G	G	T	rs200281750	alternate_allele	TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	319	13	301	6	3	3	0	0	0
BTBD11	121551	ucsc.edu	37	12	107937768	107937768	+	Missense_Mutation	SNP	G	G	T	rs1558781	byfrequency;alternate_allele	TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	34	4	40	0	9	9	0	0	0
ALKBH2	121642	bcgsc.ca	37	12	109526190	109526190	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	138	8	163	3	34	34	0	0	0
ACACB	32	ucsc.edu	37	12	109609641	109609641	+	Silent	SNP	C	C	A	rs141397365	alternate_allele	TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	36	4	42	0	0	0	0	0	0
GIT2	9815	bcgsc.ca	37	12	110426805	110426805	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	307	13	305	5	14	14	0	0	0
SIRT4	23409	ucsc.edu	37	12	120750465	120750465	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	53	5	46	0	2	2	0	0	0
P2RX7	5027	ucsc.edu;bcgsc.ca	37	12	121618189	121618189	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	66	7	81	0	0	0	0	0	0
VPS33A	65082	bcgsc.ca	37	12	122735550	122735550	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	100	9	146	2	16	16	0	0	0
DNAH10	196385	ucsc.edu	37	12	124252178	124252178	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	32	4	38	0	0	0	0	0	0
RIMBP2	23504	bcgsc.ca	37	12	130898843	130898843	+	Missense_Mutation	SNP	C	C	A	rs71468421	alternate_allele	TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	141	10	119	2	0	0	0	0	0
EP400	57634	broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	132472272	132472272	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	45	12	74	0	9	9	0	0	0
EP400	57634	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	132472274	132472274	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	47	14	82	2	9	9	0	0	0
ANKLE2	23141	bcgsc.ca	37	12	133311120	133311120	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	281	13	286	1	17	17	0	0	0
MTMR6	9107	ucsc.edu	37	13	25840318	25840318	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	51	5	53	0	13	13	0	0	0
LNX2	222484	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	13	28136573	28136575	+	In_Frame_Del	DEL	CCG	CCG	-	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	CCG	CCG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	143	58	175	0	0	0	0	0	0
LNX2	222484	hgsc.bcm.edu	37	13	28136573	28136576	+	Frame_Shift_Del	DEL	CCGG	CCGG	-	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	CCGG	CCGG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	154	30	181	0	0	0	0	0	0
LNX2	222484	bcgsc.ca	37	13	28136576	28136576	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	134	54	174	0	3	3	0	0	0
SLC7A1	6541	ucsc.edu	37	13	30090374	30090374	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	42	4	26	0	0	0	0	0	0
FOXO1	2308	ucsc.edu	37	13	41239735	41239735	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	27	4	32	0	4	4	0	0	0
KBTBD7	84078	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	41766948	41766948	+	Silent	SNP	A	A	T	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	47	23	57	1	4	2	2	0	0
NUFIP1	26747	ucsc.edu	37	13	45563278	45563278	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	42	4	39	0	15	15	0	0	0
CDADC1	81602	ucsc.edu	37	13	49841975	49841975	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	43	4	45	0	5	5	0	0	0
LECT1	11061	ucsc.edu	37	13	53313834	53313834	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	37	4	47	0	0	0	0	0	0
PIBF1	10464	ucsc.edu	37	13	73482779	73482779	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	42	4	65	0	10	10	0	0	0
RBM26	64062	ucsc.edu;bcgsc.ca	37	13	79932409	79932409	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	60	8	62	0	0	0	0	0	0
DZIP1	22873	ucsc.edu	37	13	96282246	96282246	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	64	6	72	0	2	2	0	0	0
DOCK9	23348	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	99540613	99540613	+	Splice_Site	SNP	C	C	T	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	224	24	227	0	0	0	0	0	0
UBAC2	337867	ucsc.edu	37	13	99853735	99853735	+	Nonsense_Mutation	SNP	G	G	T	rs144632306	alternate_allele	TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	44	4	52	1	2	2	0	0	0
NALCN	259232	bcgsc.ca	37	13	101756698	101756698	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	115	9	104	0	0	0	0	0	0
BIVM-ERCC5	0	ucsc.edu	37	13	103518093	103518093	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	30	4	28	0	37	37	0	0	0
ARHGEF40	55701	bcgsc.ca	37	14	21552929	21552929	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	163	12	153	2	33	33	0	0	0
SUPT16H	11198	ucsc.edu	37	14	21825490	21825490	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	38	5	64	0	33	33	0	0	0
CHD8	57680	bcgsc.ca	37	14	21868218	21868218	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	301	17	337	6	0	0	0	0	0
CHD8	57680	bcgsc.ca	37	14	21896206	21896206	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	127	8	137	1	2	2	0	0	0
PRMT5	10419	bcgsc.ca	37	14	23391392	23391392	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	159	11	190	2	2	2	0	0	0
THTPA	79178	ucsc.edu	37	14	24025971	24025971	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	39	5	45	0	18	18	0	0	0
LRRC16B	90668	ucsc.edu	37	14	24526146	24526146	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	37	4	46	0	2	2	0	0	0
DCAF11	80344	ucsc.edu	37	14	24588991	24588991	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	35	4	50	0	68	68	0	0	0
IPO4	79711	bcgsc.ca	37	14	24656671	24656671	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	112	10	120	1	42	42	0	0	0
HECTD1	25831	ucsc.edu	37	14	31614076	31614076	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	38	4	47	0	7	7	0	0	0
KIAA0391	9692	ucsc.edu	37	14	35595981	35595981	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	21	4	35	0	0	0	0	0	0
ATP5S	27109	ucsc.edu	37	14	50789447	50789447	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	41	4	63	0	7	7	0	0	0
SPTB	6710	ucsc.edu	37	14	65253751	65253751	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	42	6	50	0	0	0	0	0	0
CHURC1	91612	bcgsc.ca	37	14	65381251	65381251	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	117	8	152	0	0	0	0	0	0
FAM71D	161142	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	67688507	67688507	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	54	11	63	0	0	0	0	0	0
VTI1B	10490	ucsc.edu	37	14	68126560	68126560	+	Missense_Mutation	SNP	C	C	A	rs201877186	alternate_allele	TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	42	5	48	0	152	152	0	0	0
MED6	10001	bcgsc.ca	37	14	71064484	71064484	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	110	9	80	1	0	0	0	0	0
PCNX	22990	ucsc.edu	37	14	71444469	71444469	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	45	5	43	0	3	3	0	0	0
DPF3	8110	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	73238479	73238479	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	90	38	158	1	0	0	0	0	0
HEATR4	399671	ucsc.edu	37	14	73989331	73989331	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	59	6	56	1	0	0	0	0	0
IFT43	112752	ucsc.edu	37	14	76549615	76549615	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	40	4	25	0	219	219	0	0	0
POMT2	29954	ucsc.edu	37	14	77751379	77751379	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	40	4	44	0	0	0	0	0	0
GALC	2581	ucsc.edu	37	14	88450740	88450740	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	23	4	29	0	0	0	0	0	0
RIN3	79890	ucsc.edu	37	14	93107665	93107665	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	54	6	56	0	0	0	0	0	0
UNC79	57578	bcgsc.ca	37	14	94088604	94088604	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	92	8	96	0	0	0	0	0	0
OTUB2	78990	ucsc.edu	37	14	94503781	94503781	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	60	6	58	0	2	2	0	0	0
PPP4R4	57718	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	14	94640864	94640864	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	49	11	88	1	0	0	0	0	0
ATG2B	55102	bcgsc.ca	37	14	96761877	96761877	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	96	8	87	0	10	10	0	0	0
VRK1	7443	ucsc.edu;bcgsc.ca	37	14	97313649	97313649	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	68	7	71	0	12	12	0	0	0
TRMT61A	115708	ucsc.edu	37	14	104001028	104001028	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	19	4	29	0	27	27	0	0	0
INF2	64423	ucsc.edu	37	14	105175708	105175708	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	41	4	35	0	0	0	0	0	0
MTA1	9112	ucsc.edu	37	14	105916650	105916650	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	53	5	61	0	0	0	0	0	0
GABRG3	2567	ucsc.edu	37	15	27777959	27777959	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	61	8	59	1	0	0	0	0	0
OCA2	4948	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	28090200	28090200	+	Splice_Site	SNP	T	T	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	59	21	74	1	0	0	0	0	0
TRPM1	4308	ucsc.edu	37	15	31318401	31318401	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	43	4	61	0	0	0	0	0	0
OTUD7A	161725	ucsc.edu	37	15	31818629	31818629	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	20	4	16	0	0	0	0	0	0
FMN1	342184	ucsc.edu	37	15	33359183	33359183	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	52	5	44	0	2	2	0	0	0
BAHD1	22893	bcgsc.ca	37	15	40750688	40750688	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	114	9	154	1	13	13	0	0	0
CASC5	57082	ucsc.edu	37	15	40921545	40921545	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	38	4	37	0	2	2	0	0	0
ZFYVE19	84936	ucsc.edu	37	15	41099860	41099860	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	35	4	42	0	2	2	0	0	0
OIP5	11339	bcgsc.ca	37	15	41624710	41624710	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	123	9	166	0	0	0	0	0	0
ITPKA	3706	ucsc.edu	37	15	41795272	41795272	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	43	5	37	0	3	3	0	0	0
MGA	23269	bcgsc.ca	37	15	41988304	41988304	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	181	10	191	4	5	5	0	0	0
PLA2G4F	255189	ucsc.edu	37	15	42442669	42442669	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	42	4	35	0	0	0	0	0	0
CDAN1	146059	ucsc.edu	37	15	43016713	43016713	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	13	4	11	0	12	12	0	0	0
TP53BP1	7158	ucsc.edu	37	15	43748118	43748118	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	42	4	71	0	21	21	0	0	0
C15orf43	145645	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	15	45270783	45270783	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	44	18	52	0	0	0	0	0	0
DUOX2	50506	ucsc.edu	37	15	45396348	45396348	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	52	6	83	0	0	0	0	0	0
DUOX1	53905	ucsc.edu	37	15	45426424	45426424	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	54	5	76	0	0	0	0	0	0
GATM	2628	ucsc.edu	37	15	45668976	45668976	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	38	5	37	0	477	477	0	0	0
SLC12A1	6557	ucsc.edu	37	15	48548042	48548042	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	25	4	42	0	4	4	0	0	0
UNC13C	440279	ucsc.edu	37	15	54614174	54614174	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	17	4	19	0	0	0	0	0	0
DYX1C1	161582	ucsc.edu	37	15	55790462	55790462	+	Silent	SNP	G	G	T	rs138100130	alternate_allele	TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	44	4	41	0	13	13	0	0	0
RFX7	64864	ucsc.edu	37	15	56388218	56388218	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	24	4	42	0	8	8	0	0	0
POLR2M	81488	ucsc.edu	37	15	57999088	57999088	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	18	4	19	0	16	16	0	0	0
SLTM	79811	bcgsc.ca	37	15	59182598	59182598	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	132	8	150	2	45	45	0	0	0
C2CD4A	145741	bcgsc.ca	37	15	62360005	62360005	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	39	6	35	0	4	4	0	0	0
ZNF609	23060	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	64966235	64966235	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	150	55	191	0	11	7	4	0	0
THSD4	79875	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	72063439	72063439	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	143	63	172	0	9	3	6	0	0
MYO9A	4649	bcgsc.ca	37	15	72192205	72192205	+	Missense_Mutation	SNP	C	C	A	rs141948847	byfrequency;alternate_allele	TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	73	7	71	0	3	3	0	0	0
CSK	1445	ucsc.edu	37	15	75091830	75091830	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	21	4	27	0	0	0	0	0	0
FBXO22	26263	ucsc.edu	37	15	76206519	76206519	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	60	6	56	1	30	30	0	0	0
BNC1	646	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	83932666	83932666	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	71	27	92	0	4	3	1	0	0
DET1	55070	bcgsc.ca	37	15	89073861	89073861	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	95	9	100	0	0	0	0	0	0
C15orf38	348110	bcgsc.ca	37	15	90447047	90447047	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	109	8	124	0	33	33	0	0	0
ZNF710	374655	ucsc.edu;bcgsc.ca	37	15	90610969	90610969	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	61	6	57	0	9	9	0	0	0
GABARAPL3	23766	ucsc.edu	37	15	90892274	90892274	+	RNA	SNP	G	G	T	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	38	4	37	0	0	0	0	0	0
ADAMTS17	170691	ucsc.edu	37	15	100801830	100801830	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	46	5	25	0	0	0	0	0	0
ADAMTS17	170691	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	100871170	100871170	+	Silent	SNP	G	G	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	87	47	99	0	0	0	0	0	0
PCSK6	5046	broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	101933522	101933522	+	Silent	SNP	G	G	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	41	18	57	1	1	0	1	0	0
C16orf13	84326	ucsc.edu	37	16	684777	684777	+	Missense_Mutation	SNP	C	C	A	rs147359915	alternate_allele	TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	31	4	26	0	322	322	0	0	0
CHTF18	63922	ucsc.edu	37	16	839318	839318	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	17	4	14	0	10	10	0	0	0
CRAMP1L	57585	ucsc.edu	37	16	1719149	1719149	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	36	4	17	0	3	3	0	0	0
MSRB1	51734	ucsc.edu	37	16	1991390	1991390	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	45	5	23	0	448	448	0	0	0
NOXO1	124056	ucsc.edu	37	16	2030688	2030688	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	24	4	20	0	1	1	0	0	0
PKD1	5310	ucsc.edu	37	16	2143621	2143621	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	36	5	22	0	8	8	0	0	0
PKD1	5310	ucsc.edu	37	16	2156516	2156516	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	23	4	22	0	27	27	0	0	0
FLYWCH1	84256	ucsc.edu	37	16	2988193	2988193	+	Silent	SNP	C	C	A	rs200255837	alternate_allele	TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	43	4	28	0	0	0	0	0	0
DNASE1	1773	ucsc.edu	37	16	3707937	3707937	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	47	5	49	0	2	2	0	0	0
USP7	7874	bcgsc.ca	37	16	8990919	8990919	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	585	18	324	0	52	52	0	0	0
GRIN2A	2903	bcgsc.ca	37	16	9858737	9858737	+	Silent	SNP	C	C	A	rs113847665	alternate_allele	TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	310	13	196	3	0	0	0	0	0
RRN3	54700	ucsc.edu	37	16	15188011	15188011	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	29	4	14	0	0	0	0	0	0
PDILT	204474	hgsc.bcm.edu	37	16	20410442	20410442	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	105	7	68	1	0	0	0	0	0
PRKCB	5579	bcgsc.ca	37	16	23847620	23847620	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	249	12	152	2	0	0	0	0	0
SPNS1	83985	bcgsc.ca	37	16	28989309	28989309	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	174	11	134	2	62	62	0	0	0
SPN	6693	bcgsc.ca	37	16	29675104	29675104	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	200	12	141	2	2	2	0	0	0
TBC1D10B	26000	ucsc.edu	37	16	30370627	30370627	+	Missense_Mutation	SNP	G	G	T	rs142710856	alternate_allele	TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	20	4	12	0	92	92	0	0	0
PRSS36	146547	ucsc.edu	37	16	31160449	31160449	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	28	4	20	0	0	0	0	0	0
ITGAM	3684	ucsc.edu	37	16	31288264	31288264	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	45	5	39	0	3	3	0	0	0
SHCBP1	79801	ucsc.edu	37	16	46618002	46618002	+	Splice_Site	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	27	5	16	0	0	0	0	0	0
IRX6	79190	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	16	55360382	55360382	+	Silent	SNP	G	G	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	48	28	40	0	24	4	20	0	0
CDH5	1003	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	66413245	66413245	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	268	61	231	0	1	1	0	0	0
DPEP2	64174	bcgsc.ca	37	16	68021617	68021617	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	203	10	115	0	5	5	0	0	0
SLC7A6OS	84138	ucsc.edu	37	16	68344438	68344438	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	15	4	10	0	15	15	0	0	0
PRMT7	54496	bcgsc.ca	37	16	68358714	68358714	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	145	8	88	1	6	6	0	0	0
NIP7	51388	bcgsc.ca	37	16	69373945	69373945	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	120	8	101	1	56	56	0	0	0
MTSS1L	92154	ucsc.edu	37	16	70714902	70714902	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	42	4	38	0	9	9	0	0	0
HYDIN	54768	ucsc.edu	37	16	70866772	70866772	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	50	6	42	0	0	0	0	0	0
ZFHX3	463	bcgsc.ca	37	16	72830034	72830034	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	228	10	154	0	3	3	0	0	0
GAN	8139	bcgsc.ca	37	16	81390561	81390561	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	291	13	235	4	1	1	0	0	0
PLCG2	5336	broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	81922847	81922847	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	34	10	30	0	3	2	1	0	0
TAF1C	9013	ucsc.edu;bcgsc.ca	37	16	84215230	84215230	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	59	7	40	0	30	30	0	0	0
USP10	9100	bcgsc.ca	37	16	84792372	84792372	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	240	13	192	2	90	90	0	0	0
MTHFSD	64779	ucsc.edu	37	16	86565789	86565789	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	26	4	18	0	7	7	0	0	0
ZCCHC14	23174	ucsc.edu	37	16	87446699	87446699	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	39	4	37	0	14	14	0	0	0
ZC3H18	124245	bcgsc.ca	37	16	88666335	88666335	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	172	9	144	0	50	50	0	0	0
RPH3AL	9501	ucsc.edu;bcgsc.ca	37	17	69455	69455	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	84	9	107	0	15	15	0	0	0
ASPA	443	bcgsc.ca	37	17	3397705	3397705	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	359	16	383	7	9	9	0	0	0
P2RX5	5026	broad.mit.edu;bcgsc.ca	37	17	3583061	3583061	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	32	10	47	0	1	0	1	0	0
CAMKK1	84254	ucsc.edu	37	17	3783692	3783692	+	Silent	SNP	C	C	A	rs141585801	byfrequency;alternate_allele	TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	32	4	26	0	10	10	0	0	0
CHRNE	1145	ucsc.edu	37	17	4804141	4804141	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	37	4	51	0	2	2	0	0	0
INCA1	388324	ucsc.edu	37	17	4892210	4892210	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	35	4	45	0	5	5	0	0	0
KIF1C	10749	ucsc.edu	37	17	4917022	4917022	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	41	4	54	0	0	0	0	0	0
RABEP1	9135	bcgsc.ca	37	17	5271744	5271744	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	178	10	212	1	23	23	0	0	0
SLC13A5	284111	bcgsc.ca	37	17	6589587	6589587	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	132	8	153	1	0	0	0	0	0
PLSCR3	57048	bcgsc.ca	37	17	7294104	7294104	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	114	8	139	2	0	0	0	0	0
SPEM1	374768	ucsc.edu	37	17	7324629	7324629	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	39	4	42	0	0	0	0	0	0
ALOXE3	59344	ucsc.edu	37	17	8021163	8021163	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	34	4	27	0	0	0	0	0	0
MYOCD	93649	bcgsc.ca	37	17	12666458	12666458	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	167	8	181	1	0	0	0	0	0
TVP23C	201158	ucsc.edu	37	17	15457087	15457087	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	371	32	378	24	24	5	19	0	0
CDRT1	374286	bcgsc.ca	37	17	15496710	15496710	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	389	15	408	2	0	0	0	0	0
TNFRSF13B	23495	ucsc.edu	37	17	16843039	16843039	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	39	4	40	0	0	0	0	0	0
SREBF1	6720	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	17722461	17722461	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	83	34	92	0	28	13	15	0	0
SLC47A2	146802	ucsc.edu	37	17	19607399	19607399	+	Silent	SNP	C	C	A	rs146879889	byfrequency;alternate_allele	TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	36	4	52	0	285	284	1	0	0
AKAP10	11216	bcgsc.ca	37	17	19845195	19845195	+	Silent	SNP	C	C	G	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	38	4	61	0	15	15	0	0	0
LYRM9	201229	ucsc.edu	37	17	26207312	26207312	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	24	4	21	0	4	4	0	0	0
SPAG5	10615	ucsc.edu	37	17	26907127	26907127	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	29	4	40	0	0	0	0	0	0
PHF12	57649	ucsc.edu	37	17	27233465	27233465	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	70	7	94	0	28	28	0	0	0
TAOK1	57551	bcgsc.ca	37	17	27869723	27869723	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	214	13	234	2	15	15	0	0	0
NF1	4763	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	29490388	29490388	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	104	56	110	0	0	0	0	0	0
NF1	4763	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	29552188	29552189	+	Frame_Shift_Del	DEL	AG	AG	-	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	AG	AG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	177	70	171	0	0	0	0	0	0
LRRC37B	114659	bcgsc.ca	37	17	30374836	30374836	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	252	13	252	2	24	24	0	0	0
RHOT1	55288	bcgsc.ca	37	17	30500860	30500860	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	127	8	116	0	0	0	0	0	0
ASIC2	40	ucsc.edu	37	17	32483363	32483363	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	42	4	58	0	0	0	0	0	0
RFFL	117584	ucsc.edu	37	17	33348417	33348417	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	60	6	63	1	20	20	0	0	0
MLLT6	4302	ucsc.edu	37	17	36873221	36873221	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	32	4	29	0	0	0	0	0	0
GSDMA	284110	ucsc.edu	37	17	38128424	38128424	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	31	4	23	0	0	0	0	0	0
TOP2A	7153	bcgsc.ca	37	17	38557212	38557212	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	335	14	304	1	6	6	0	0	0
KRTAP4-9	100132386	broad.mit.edu	37	17	39262083	39262083	+	Missense_Mutation	SNP	A	A	C	rs79447029		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	46	5	36	2	0	0	0	0	0
KRTAP4-1	85285	ucsc.edu	37	17	39341086	39341086	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	37	4	43	0	0	0	0	0	0
NT5C3B	115024	ucsc.edu	37	17	39991479	39991479	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	49	5	52	0	41	41	0	0	0
CNP	1267	ucsc.edu	37	17	40124023	40124023	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	40	4	36	0	91	91	0	0	0
DHX58	79132	ucsc.edu	37	17	40256808	40256808	+	Missense_Mutation	SNP	C	C	A	rs145626818		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	45	5	43	0	17	17	0	0	0
HSPB9	94086	bcgsc.ca	37	17	40275188	40275188	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	146	10	139	1	0	0	0	0	0
WNK4	65266	ucsc.edu	37	17	40946671	40946671	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	36	4	41	0	11	11	0	0	0
HEXIM1	10614	ucsc.edu	37	17	43226776	43226776	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	40	4	47	0	50	50	0	0	0
WNT3	7473	ucsc.edu	37	17	44847309	44847309	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	33	4	42	0	1	1	0	0	0
NGFR	4804	ucsc.edu	37	17	47583740	47583740	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	35	4	35	0	0	0	0	0	0
KAT7	11143	bcgsc.ca	37	17	47874183	47874183	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	208	11	221	3	14	14	0	0	0
COL1A1	1277	ucsc.edu	37	17	48267093	48267093	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	39	5	42	0	0	0	0	0	0
SPATA20	64847	ucsc.edu	37	17	48625025	48625025	+	Splice_Site	SNP	G	G	T	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	37	5	36	0	0	0	0	0	0
CACNA1G	8913	ucsc.edu	37	17	48678527	48678527	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	35	4	50	0	0	0	0	0	0
SEPT4	5414	ucsc.edu	37	17	56603639	56603639	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	40	5	37	0	3	3	0	0	0
VMP1	81671	ucsc.edu	37	17	57851199	57851199	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	37	4	71	0	97	97	0	0	0
TLK2	11011	ucsc.edu	37	17	60637475	60637475	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	48	4	60	0	0	0	0	0	0
KCNH6	81033	ucsc.edu	37	17	61621449	61621449	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	35	4	29	0	10	10	0	0	0
POLG2	11232	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	62486981	62486981	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	81	39	86	0	8	6	2	0	0
PLEKHM1P	440456	ucsc.edu	37	17	62820861	62820861	+	RNA	SNP	G	G	T	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	36	4	36	0	3	3	0	0	0
LINC00674	100499466	ucsc.edu	37	17	66123776	66123776	+	RNA	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	44	4	44	0	65	65	0	0	0
SDK2	54549	ucsc.edu	37	17	71412056	71412056	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	21	4	23	0	0	0	0	0	0
CD300LB	124599	bcgsc.ca	37	17	72527503	72527503	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	88	7	89	1	0	0	0	0	0
HID1	283987	ucsc.edu	37	17	72954779	72954779	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	40	4	49	0	0	0	0	0	0
CASKIN2	57513	ucsc.edu	37	17	73504359	73504359	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	24	5	28	0	0	0	0	0	0
SAP30BP	29115	ucsc.edu	37	17	73664705	73664705	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	35	4	64	0	0	0	0	0	0
MRPL38	64978	ucsc.edu	37	17	73895690	73895690	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	37	4	16	0	236	234	0	2	0
CCDC40	55036	ucsc.edu;bcgsc.ca	37	17	78071049	78071049	+	Silent	SNP	C	C	A	rs79588289	alternate_allele	TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	74	7	116	0	0	0	0	0	0
GAA	2548	ucsc.edu	37	17	78078503	78078503	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	30	4	37	0	67	67	0	0	0
RNF213	57674	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	78293016	78293016	+	Silent	SNP	C	C	G	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	218	79	217	0	15	10	5	0	0
RPTOR	57521	ucsc.edu;bcgsc.ca	37	17	78897438	78897438	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	31	5	29	0	20	20	0	0	0
PCYT2	5833	bcgsc.ca	37	17	79866837	79866837	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	119	9	144	1	46	46	0	0	0
SIRT7	51547	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	79870325	79870325	+	Silent	SNP	G	G	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	219	107	271	2	29	12	17	0	0
FASN	2194	ucsc.edu	37	17	80046677	80046677	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	38	5	51	0	11	11	0	0	0
CSNK1D	1453	hgsc.bcm.edu	37	17	80211077	80211077	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	227	12	217	2	101	101	0	0	0
TBCD	6904	ucsc.edu	37	17	80767618	80767618	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	40	4	38	0	41	41	0	0	0
USP14	9097	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	18	163336	163336	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	24	17	35	0	4	0	4	0	0
MYOM1	8736	ucsc.edu	37	18	3134792	3134792	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	50	6	84	1	0	0	0	0	0
L3MBTL4	91133	bcgsc.ca	37	18	5969506	5969506	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	48	8	94	2	0	0	0	0	0
ARHGAP28	79822	ucsc.edu	37	18	6868198	6868198	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	50	5	83	0	0	0	0	0	0
PTPRM	5797	ucsc.edu	37	18	8069992	8069992	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	32	4	42	0	1	1	0	0	0
PPP4R1	9989	ucsc.edu	37	18	9553367	9553367	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	46	5	86	0	17	17	0	0	0
PIEZO2	63895	ucsc.edu	37	18	10696105	10696105	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	65	6	124	1	0	0	0	0	0
CHMP1B	57132	ucsc.edu	37	18	11851665	11851665	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	35	4	55	0	59	59	0	0	0
MC5R	4161	bcgsc.ca	37	18	13826277	13826277	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	278	12	480	6	0	0	0	0	0
CABYR	26256	ucsc.edu	37	18	21736910	21736910	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	34	4	68	0	0	0	0	0	0
DSC3	1825	ucsc.edu	37	18	28604400	28604400	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	51	5	91	1	0	0	0	0	0
DSC2	1824	ucsc.edu	37	18	28648896	28648896	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	43	5	92	0	11	11	0	0	0
DSG4	147409	ucsc.edu	37	18	28991186	28991186	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	50	5	107	2	0	0	0	0	0
DSG3	1830	ucsc.edu;bcgsc.ca	37	18	29046521	29046521	+	Silent	SNP	G	G	T	rs199540300	alternate_allele	TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	76	8	150	0	0	0	0	0	0
TRAPPC8	22878	ucsc.edu	37	18	29437614	29437614	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	43	4	87	1	18	18	0	0	0
CCDC178	374864	ucsc.edu	37	18	30806766	30806766	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	42	4	74	1	0	0	0	0	0
ZNF271	10778	ucsc.edu	37	18	32886904	32886904	+	RNA	SNP	G	G	T	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	41	4	49	0	7	7	0	0	0
CXXC1	30827	ucsc.edu	37	18	47812231	47812231	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	40	5	59	0	12	12	0	0	0
MEX3C	51320	ucsc.edu	37	18	48703856	48703856	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	74	7	101	0	17	17	0	0	0
CCDC68	80323	ucsc.edu	37	18	52609912	52609912	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	51	5	68	0	0	0	0	0	0
WDR7	23335	ucsc.edu	37	18	54361934	54361934	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	36	5	57	0	1	1	0	0	0
ZNF407	55628	ucsc.edu	37	18	72345034	72345034	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	33	4	72	0	0	0	0	0	0
MIER2	54531	ucsc.edu	37	19	327870	327870	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	37	4	34	0	0	0	0	0	0
BSG	682	ucsc.edu	37	19	580693	580693	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	46	5	61	1	2598	2598	0	0	0
PTBP1	5725	ucsc.edu	37	19	804120	804120	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	54	5	37	0	118	118	0	0	0
ATP8B3	148229	ucsc.edu	37	19	1796849	1796849	+	Silent	SNP	G	G	T	rs145895698	alternate_allele	TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	30	4	36	0	0	0	0	0	0
MATK	4145	ucsc.edu	37	19	3789338	3789338	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	46	4	44	0	0	0	0	0	0
PLIN3	10226	ucsc.edu	37	19	4847808	4847808	+	Silent	SNP	C	C	A	rs201530589	alternate_allele	TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	23	4	34	0	62	62	0	0	0
ALKBH7	84266	bcgsc.ca	37	19	6374898	6374898	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	75	7	92	1	81	81	0	0	0
C19orf45	374877	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	7570473	7570475	+	In_Frame_Del	DEL	CGG	CGG	-	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	CGG	CGG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	71	25	97	0	0	0	0	0	0
MUC16	94025	bcgsc.ca	37	19	9060801	9060801	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	132	8	150	0	0	0	0	0	0
MUC16	94025	ucsc.edu	37	19	9067906	9067906	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	32	4	31	0	0	0	0	0	0
ZNF627	199692	bcgsc.ca	37	19	11725439	11725439	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	162	10	153	3	15	15	0	0	0
CC2D1A	54862	ucsc.edu	37	19	14038967	14038967	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	40	4	36	0	37	37	0	0	0
LPHN1	22859	hgsc.bcm.edu	37	19	14268166	14268166	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	135	7	113	1	10	10	0	0	0
PKN1	5585	ucsc.edu	37	19	14581077	14581077	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	49	5	61	1	281	281	0	0	0
OR1I1	126370	bcgsc.ca	37	19	15198534	15198534	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	71	6	78	1	0	0	0	0	0
EPS15L1	58513	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	16551694	16551694	+	Silent	SNP	A	A	G	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	503	186	541	1	32	9	23	0	0
CCDC124	115098	ucsc.edu	37	19	18047248	18047248	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	26	4	32	0	123	123	0	0	0
KCNN1	3780	ucsc.edu	37	19	18092725	18092725	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	34	4	39	0	1	1	0	0	0
IL12RB1	3594	ucsc.edu	37	19	18184401	18184401	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	35	4	32	0	1	1	0	0	0
PIK3R2	5296	ucsc.edu	37	19	18271294	18271294	+	Silent	SNP	C	C	A	rs148843363	alternate_allele	TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	40	4	46	0	10	10	0	0	0
ELL	8178	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	18557590	18557590	+	Silent	SNP	G	G	A	rs200056265		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	37	16	69	0	9	4	5	0	0
RFXANK	8625	bcgsc.ca	37	19	19304836	19304836	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	173	9	192	2	158	158	0	0	0
CILP2	148113	ucsc.edu	37	19	19653184	19653184	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	22	4	49	0	0	0	0	0	0
ZNF708	7562	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	21493348	21493348	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	97	46	107	1	1	1	0	0	0
ZNF257	113835	ucsc.edu;bcgsc.ca	37	19	22271999	22271999	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	57	7	74	1	1	1	0	0	0
HAVCR1P1	100101266	ucsc.edu	37	19	24345329	24345329	+	RNA	SNP	G	G	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	60	1	48	0	1	1	0	0	0
UBA2	10054	ucsc.edu	37	19	34957908	34957908	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	26	5	34	0	0	0	0	0	0
ZNF30	90075	hgsc.bcm.edu;broad.mit.edu	37	19	35434184	35434184	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	44	22	47	0	2	2	0	0	0
HPN	3249	ucsc.edu	37	19	35556176	35556176	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	59	6	80	0	780	780	0	0	0
CD22	933	ucsc.edu	37	19	35828793	35828793	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	45	5	54	0	0	0	0	0	0
ATP4A	495	ucsc.edu	37	19	36044621	36044621	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	49	6	46	0	0	0	0	0	0
RBM42	79171	ucsc.edu	37	19	36128365	36128365	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	56	6	65	1	196	196	0	0	0
ETV2	2116	ucsc.edu	37	19	36133379	36133379	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	40	4	57	1	0	0	0	0	0
C19orf55	148137	ucsc.edu	37	19	36258781	36258781	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	23	4	40	0	5	5	0	0	0
RYR1	6261	bcgsc.ca	37	19	39062838	39062838	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	146	8	171	2	1	1	0	0	0
PAPL	0	ucsc.edu	37	19	39589259	39589259	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	30	4	46	0	0	0	0	0	0
EID2B	126272	ucsc.edu	37	19	40023440	40023440	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	40	4	61	0	1	1	0	0	0
MAP3K10	4294	ucsc.edu	37	19	40718851	40718851	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	36	4	54	0	11	11	0	0	0
B3GNT8	374907	ucsc.edu	37	19	41931822	41931822	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	38	4	48	0	1	1	0	0	0
ZNF526	116115	ucsc.edu	37	19	42729437	42729437	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	49	5	46	0	6	6	0	0	0
SMG9	56006	ucsc.edu	37	19	44237073	44237073	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	54	5	73	0	29	29	0	0	0
BCL3	602	ucsc.edu	37	19	45259513	45259513	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	39	4	40	0	32	32	0	0	0
BCAM	4059	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	45322619	45322619	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	46	22	84	0	482	214	268	0	0
SIX5	147912	ucsc.edu	37	19	46269287	46269287	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	24	4	23	0	31	31	0	0	0
PNMAL2	57469	bcgsc.ca	37	19	46998156	46998156	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	87	8	89	1	0	0	0	0	0
CABP5	56344	ucsc.edu	37	19	48537496	48537496	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	38	4	45	0	0	0	0	0	0
KDELR1	10945	ucsc.edu	37	19	48887616	48887616	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	39	4	34	0	823	823	0	0	0
LMTK3	114783	ucsc.edu	37	19	49016442	49016442	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	20	4	22	0	0	0	0	0	0
MAMSTR	284358	ucsc.edu	37	19	49217246	49217246	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	34	4	33	0	0	0	0	0	0
FGF21	26291	ucsc.edu	37	19	49259588	49259588	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	41	5	57	1	0	0	0	0	0
PPFIA3	8541	ucsc.edu;bcgsc.ca	37	19	49641518	49641518	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	28	6	29	0	2	2	0	0	0
PPFIA3	8541	ucsc.edu	37	19	49646256	49646256	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	36	4	55	1	0	0	0	0	0
AP2A1	160	ucsc.edu	37	19	50306231	50306231	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	30	4	26	0	45	44	0	1	0
MED25	81857	ucsc.edu	37	19	50335225	50335225	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	45	4	79	0	89	89	0	0	0
JOSD2	126119	bcgsc.ca	37	19	51013674	51013674	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	108	7	159	2	117	117	0	0	0
ZNF28	7576	ucsc.edu	37	19	53304673	53304673	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	339	14	369	5	27	18	9	0	0
MIR516B1	574490	bcgsc.ca	37	19	54240106	54240106	+	RNA	SNP	C	C	A	rs200729527		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	170	12	200	1	1	1	0	0	0
LILRA5	353514	ucsc.edu	37	19	54823859	54823859	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	42	4	54	0	0	0	0	0	0
FCAR	2204	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	55385758	55385758	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	136	59	138	0	0	0	0	0	0
RDH13	112724	ucsc.edu	37	19	55568058	55568058	+	Silent	SNP	G	G	T	rs199574409	alternate_allele	TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	54	6	67	1	28	28	0	0	0
TNNT1	7138	ucsc.edu	37	19	55648488	55648488	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	51	5	48	0	3	3	0	0	0
ZFP28	140612	ucsc.edu	37	19	57060353	57060353	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	45	4	48	0	3	3	0	0	0
ZNF264	9422	ucsc.edu	37	19	57723873	57723873	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	51	5	88	0	5	5	0	0	0
ZNF460	10794	bcgsc.ca	37	19	57803200	57803200	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	77	7	81	0	2	2	0	0	0
ZNF548	147694	ucsc.edu	37	19	57905584	57905584	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	26	4	21	0	0	0	0	0	0
ZNF772	400720	ucsc.edu	37	19	57984696	57984696	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	52	5	57	0	0	0	0	0	0
ZNF544	27300	ucsc.edu	37	19	58772271	58772271	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	52	5	69	0	7	7	0	0	0
MYT1L	23040	ucsc.edu;bcgsc.ca	37	2	1915833	1915833	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	57	7	48	0	0	0	0	0	0
ASAP2	8853	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	9515020	9515020	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	158	60	191	1	10	5	5	0	0
GREB1	9687	ucsc.edu	37	2	11736354	11736354	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	48	6	55	0	0	0	0	0	0
IFT172	26160	bcgsc.ca	37	2	27672192	27672192	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	139	9	131	0	18	18	0	0	0
C2orf16	84226	hgsc.bcm.edu;bcgsc.ca	37	2	27802751	27802751	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	155	9	159	2	0	0	0	0	0
ZNF512	84450	ucsc.edu	37	2	27822898	27822898	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	40	5	41	0	11	11	0	0	0
ZNF512	84450	ucsc.edu	37	2	27844264	27844264	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	42	4	57	1	10	10	0	0	0
TRMT61B	55006	ucsc.edu	37	2	29093063	29093063	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	41	4	37	0	15	15	0	0	0
TRMT61B	55006	ucsc.edu	37	2	29093089	29093089	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	41	4	31	0	5	5	0	0	0
BIRC6	57448	ucsc.edu	37	2	32730134	32730134	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	37	4	49	0	15	15	0	0	0
HEATR5B	54497	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	37235951	37235951	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	196	83	243	0	10	8	2	0	0
GALM	130589	bcgsc.ca	37	2	38903198	38903198	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	94	8	119	1	0	0	0	0	0
THADA	63892	ucsc.edu	37	2	43459852	43459852	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	43	4	34	0	3	3	0	0	0
THADA	63892	ucsc.edu	37	2	43514166	43514166	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	41	4	45	0	33	33	0	0	0
USP34	9736	ucsc.edu	37	2	61433932	61433932	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	42	4	61	0	12	12	0	0	0
AAK1	22848	ucsc.edu	37	2	69734679	69734679	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	17	4	13	0	5	5	0	0	0
FBXO41	150726	ucsc.edu	37	2	73493809	73493809	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	46	5	72	1	0	0	0	0	0
ACTG2	72	ucsc.edu	37	2	74135873	74135873	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	51	5	57	0	2	2	0	0	0
HK2	3099	ucsc.edu	37	2	75108950	75108950	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	40	4	43	0	31	31	0	0	0
ANKRD20A8P	729171	bcgsc.ca	37	2	95456791	95456791	+	RNA	SNP	T	T	G	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	73	32	91	0	0	0	0	0	0
LOC442028	0	ucsc.edu	37	2	95539222	95539222	+	RNA	SNP	C	C	A	rs4498682	alternate_allele	TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	46	4	33	0	0	0	0	0	0
FER1L5	90342	ucsc.edu	37	2	97361606	97361606	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	36	4	23	0	0	0	0	0	0
CNNM3	26505	bcgsc.ca	37	2	97483180	97483180	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	125	8	150	0	32	32	0	0	0
VWA3B	200403	bcgsc.ca	37	2	98737907	98737907	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	108	9	127	2	0	0	0	0	0
TBC1D8	11138	bcgsc.ca	37	2	101627925	101627925	+	Missense_Mutation	SNP	C	C	A	rs1062062	byfrequency;alternate_allele	TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	101	7	99	1	2	2	0	0	0
MERTK	10461	ucsc.edu	37	2	112686878	112686878	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	39	5	47	0	5	5	0	0	0
SLC35F5	80255	ucsc.edu	37	2	114512742	114512742	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	53	5	42	0	0	0	0	0	0
DPP10	57628	bcgsc.ca	37	2	116066874	116066874	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	94	8	91	0	0	0	0	0	0
CLASP1	23332	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	122122716	122122716	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	39	20	40	0	17	8	9	0	0
MYO7B	4648	ucsc.edu	37	2	128367165	128367165	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	51	6	37	0	36	36	0	0	0
LOC401010	0	ucsc.edu	37	2	132201777	132201777	+	RNA	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	26	4	28	0	0	0	0	0	0
LOC150776	0	ucsc.edu	37	2	132263960	132263960	+	RNA	SNP	G	G	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	64	2	73	0	31	2	29	0	0
THSD7B	80731	bcgsc.ca	37	2	138163210	138163210	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	69	6	67	0	0	0	0	0	0
KLHL23	151230	bcgsc.ca	37	2	170606197	170606197	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	154	10	171	1	9	9	0	0	0
RAPGEF4	11069	bcgsc.ca	37	2	173853436	173853436	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	191	12	198	3	0	0	0	0	0
NFE2L2	4780	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	178098800	178098800	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	99	41	118	0	61	38	23	0	0
TTN	7273	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	179550284	179550284	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	58	22	83	0	0	0	0	0	0
TTN	7273	bcgsc.ca	37	2	179641027	179641027	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	250	12	230	2	0	0	0	0	0
IDH1	3417	bcgsc.ca	37	2	209104650	209104650	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	130	8	124	0	68	68	0	0	0
CPS1	1373	bcgsc.ca	37	2	211473215	211473215	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	142	9	113	2	2	2	0	0	0
FN1	2335	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	216289927	216289927	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	224	90	267	1	58	34	24	0	0
CXCR2P1	3580	ucsc.edu	37	2	218925319	218925319	+	RNA	SNP	G	G	T	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	33	4	43	0	0	0	0	0	0
CCDC108	255101	ucsc.edu;bcgsc.ca	37	2	219885964	219885964	+	Silent	SNP	G	G	T	rs137945646	alternate_allele	TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	39	7	51	0	0	0	0	0	0
SLC4A3	6508	ucsc.edu	37	2	220494804	220494804	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	24	4	37	0	0	0	0	0	0
SLC4A3	6508	ucsc.edu	37	2	220499312	220499312	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	42	5	35	0	0	0	0	0	0
COL4A4	1286	ucsc.edu	37	2	227872783	227872783	+	Missense_Mutation	SNP	G	G	T	rs190148408	alternate_allele	TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	32	4	47	0	5	5	0	0	0
SLC19A3	80704	bcgsc.ca	37	2	228552882	228552882	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	113	9	114	0	0	0	0	0	0
SP140	11262	ucsc.edu	37	2	231113669	231113669	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	64	6	56	0	0	0	0	0	0
ALPI	248	ucsc.edu	37	2	233323405	233323405	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	44	5	46	0	2	2	0	0	0
GIGYF2	26058	hgsc.bcm.edu	37	2	233712220	233712220	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	34	2	28	0	0	0	0	0	0
DGKD	8527	bcgsc.ca	37	2	234360641	234360641	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	82	7	123	1	3	3	0	0	0
UGT1A5	54579	ucsc.edu	37	2	234680914	234680914	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	41	4	35	0	59	59	0	0	0
COL6A3	1293	ucsc.edu;bcgsc.ca	37	2	238250762	238250762	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	58	7	78	0	3	3	0	0	0
CAPN10	11132	ucsc.edu	37	2	241535938	241535938	+	Missense_Mutation	SNP	G	G	T	rs200700918	alternate_allele	TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	39	4	48	0	3	3	0	0	0
NRSN2	80023	bcgsc.ca	37	20	333868	333868	+	Silent	SNP	G	G	T	rs140098458	alternate_allele	TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	154	8	175	3	78	78	0	0	0
SNPH	9751	ucsc.edu	37	20	1285892	1285892	+	Missense_Mutation	SNP	C	C	A	rs147549046	alternate_allele	TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	32	4	40	0	3	3	0	0	0
SNRPB	6628	bcgsc.ca	37	20	2444509	2444509	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	154	9	148	0	547	547	0	0	0
FASTKD5	60493	ucsc.edu	37	20	3128492	3128492	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	64	6	92	0	10	10	0	0	0
RIN2	54453	ucsc.edu	37	20	19941403	19941403	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	29	4	17	0	10	10	0	0	0
CRNKL1	51340	ucsc.edu	37	20	20033245	20033245	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	35	4	39	0	0	0	0	0	0
GZF1	64412	bcgsc.ca	37	20	23345030	23345030	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	138	8	146	1	2	2	0	0	0
PYGB	5834	bcgsc.ca	37	20	25261605	25261605	+	Silent	SNP	C	C	A	rs2228978	byfrequency;alternate_allele	TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	144	10	132	2	121	121	0	0	0
XKR7	343702	ucsc.edu	37	20	30584915	30584915	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	42	4	61	1	0	0	0	0	0
CDK5RAP1	51654	bcgsc.ca	37	20	31984823	31984823	+	Missense_Mutation	SNP	C	C	A	rs146286260	alternate_allele	TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	114	9	119	0	9	9	0	0	0
MYL9	10398	ucsc.edu	37	20	35176435	35176435	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	20	4	18	0	0	0	0	0	0
TOX2	84969	bcgsc.ca	37	20	42635233	42635233	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	91	7	108	0	0	0	0	0	0
SEMG1	6406	ucsc.edu	37	20	43837049	43837049	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	43	4	59	0	0	0	0	0	0
SLC2A10	81031	ucsc.edu;bcgsc.ca	37	20	45358127	45358127	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	61	6	69	1	0	0	0	0	0
EYA2	2139	ucsc.edu;bcgsc.ca	37	20	45808507	45808507	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	64	7	60	0	5	5	0	0	0
SULF2	55959	ucsc.edu;bcgsc.ca	37	20	46331303	46331303	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	87	10	99	1	43	43	0	0	0
PARD6B	84612	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	20	49366983	49366991	+	In_Frame_Del	DEL	TCAAAAACT	TCAAAAACT	-	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	TCAAAAACT	TCAAAAACT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	74	22	66	0	0	0	0	0	0
BMP7	655	broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	55777539	55777539	+	Missense_Mutation	SNP	G	G	A	rs112344257		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	22	16	41	1	0	0	0	0	0
LAMA5	3911	ucsc.edu	37	20	60892522	60892522	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	52	5	50	0	0	0	0	0	0
LAMA5	3911	ucsc.edu	37	20	60895675	60895675	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	20	4	39	0	69	69	0	0	0
COL20A1	57642	ucsc.edu	37	20	61937380	61937380	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	41	4	51	0	0	0	0	0	0
COL20A1	57642	ucsc.edu	37	20	61945159	61945159	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	21	4	20	0	0	0	0	0	0
HELZ2	85441	ucsc.edu	37	20	62197067	62197067	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	49	5	63	0	5	5	0	0	0
RTEL1	51750	ucsc.edu	37	20	62319298	62319298	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	32	4	38	0	3	3	0	0	0
KRTAP6-2	337967	bcgsc.ca	37	21	31971175	31971175	+	Nonsense_Mutation	SNP	C	C	A	rs199532937	alternate_allele	TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	132	8	160	0	0	0	0	0	0
SON	6651	ucsc.edu	37	21	34927243	34927243	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	36	4	52	1	81	81	0	0	0
DSCAM	1826	bcgsc.ca	37	21	41496136	41496136	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	202	11	237	4	0	0	0	0	0
PLAC4	191585	broad.mit.edu	37	21	42551311	42551311	+	Missense_Mutation	SNP	A	A	G	rs201045863		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	6	2	17	0	0	0	0	0	0
PLAC4	191585	broad.mit.edu	37	21	42551313	42551313	+	Nonsense_Mutation	DEL	C	C	-	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	6	2	17	0	0	0	0	0	0
TMPRSS2	7113	ucsc.edu	37	21	42861495	42861495	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	50	5	70	0	1	1	0	0	0
PRDM15	63977	ucsc.edu	37	21	43274887	43274887	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	39	4	39	0	2	2	0	0	0
C21orf2	755	ucsc.edu	37	21	45751856	45751856	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	40	4	33	0	84	84	0	0	0
ITGB2	3689	ucsc.edu	37	21	46308769	46308769	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	41	4	49	0	62	62	0	0	0
POFUT2	23275	bcgsc.ca	37	21	46697023	46697023	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	87	8	120	1	23	23	0	0	0
CECR2	27443	ucsc.edu	37	22	18022100	18022100	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	39	4	61	0	0	0	0	0	0
CLTCL1	8218	ucsc.edu	37	22	19184000	19184000	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	37	4	80	0	0	0	0	0	0
RANBP1	5902	ucsc.edu	37	22	20112893	20112893	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	30	4	34	0	107	107	0	0	0
PI4KA	5297	ucsc.edu	37	22	21098946	21098946	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	25	4	73	1	23	23	0	0	0
PI4KA	5297	ucsc.edu	37	22	21119120	21119120	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	34	4	63	0	17	17	0	0	0
POM121L1P	25812	ucsc.edu	37	22	22975985	22975985	+	RNA	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	42	4	74	1	0	0	0	0	0
NIPSNAP1	8508	ucsc.edu	37	22	29957821	29957821	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	42	5	90	0	106	106	0	0	0
NF2	4771	ucsc.edu	37	22	30064406	30064406	+	Missense_Mutation	SNP	C	C	A	rs74315500	alternate_allele	TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	39	4	80	0	8	8	0	0	0
ASCC2	84164	ucsc.edu	37	22	30210709	30210709	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	26	4	50	0	16	16	0	0	0
RNF215	200312	bcgsc.ca	37	22	30776081	30776081	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	67	6	127	0	0	0	0	0	0
LIMK2	3985	ucsc.edu	37	22	31655115	31655115	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	41	5	93	1	1	1	0	0	0
LIMK2	3985	ucsc.edu	37	22	31663861	31663861	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	41	4	73	1	4	4	0	0	0
LIMK2	3985	ucsc.edu	37	22	31669476	31669476	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	36	4	80	1	6	6	0	0	0
EIF4ENIF1	56478	ucsc.edu	37	22	31864232	31864232	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	35	4	82	1	9	9	0	0	0
FOXRED2	80020	ucsc.edu	37	22	36900702	36900702	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	38	4	63	0	2	2	0	0	0
CSF2RB	1439	ucsc.edu	37	22	37334513	37334513	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	31	4	78	0	0	0	0	0	0
SSTR3	6753	ucsc.edu	37	22	37602893	37602893	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	42	4	101	1	0	0	0	0	0
TRIOBP	11078	ucsc.edu	37	22	38122151	38122151	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	38	4	110	0	0	0	0	0	0
ST13	6767	ucsc.edu	37	22	41228661	41228661	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	28	4	64	0	639	639	0	0	0
CELSR1	9620	ucsc.edu	37	22	46776756	46776756	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	37	4	62	0	16	16	0	0	0
CELSR1	9620	ucsc.edu	37	22	46780532	46780532	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	38	4	54	1	22	22	0	0	0
MAPK8IP2	23542	ucsc.edu	37	22	51043820	51043820	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	30	4	73	0	1	1	0	0	0
SSUH2	51066	bcgsc.ca	37	3	8672605	8672605	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	95	9	103	0	0	0	0	0	0
SETD5	55209	bcgsc.ca	37	3	9517606	9517606	+	Missense_Mutation	SNP	G	G	T	rs80044089	alternate_allele	TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	83	7	94	0	13	13	0	0	0
CPNE9	151835	ucsc.edu	37	3	9759713	9759713	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	50	6	53	0	0	0	0	0	0
TADA3	10474	ucsc.edu	37	3	9831255	9831255	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	49	5	58	2	151	150	0	1	0
RPUSD3	285367	ucsc.edu	37	3	9885222	9885222	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	53	6	60	1	64	63	0	1	0
IL17RC	84818	ucsc.edu	37	3	9965960	9965960	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	31	4	30	0	44	44	0	0	0
NUP210	23225	ucsc.edu	37	3	13421168	13421168	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	41	4	52	0	8	8	0	0	0
FBLN2	2199	ucsc.edu	37	3	13679093	13679093	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	34	4	29	0	6	6	0	0	0
NR2C2	7182	hgsc.bcm.edu;bcgsc.ca	37	3	15073949	15073949	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	153	8	224	1	2	2	0	0	0
ITGA9	3680	ucsc.edu	37	3	37560832	37560832	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	39	5	26	0	0	0	0	0	0
DLEC1	9940	bcgsc.ca	37	3	38087038	38087038	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	53	6	46	0	0	0	0	0	0
SCN5A	6331	hgsc.bcm.edu;bcgsc.ca	37	3	38645417	38645417	+	Missense_Mutation	SNP	G	G	A	rs199473575		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	67	35	77	0	1	1	0	0	0
CSRNP1	64651	ucsc.edu	37	3	39186720	39186720	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	59	6	73	0	0	0	0	0	0
ATRIP	84126	ucsc.edu	37	3	48488485	48488485	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	35	4	47	0	2	2	0	0	0
SLC25A20	788	ucsc.edu	37	3	48896596	48896596	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	38	4	47	0	51	51	0	0	0
WDR6	11180	bcgsc.ca	37	3	49050903	49050903	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	106	7	98	0	97	97	0	0	0
USP19	10869	bcgsc.ca	37	3	49151633	49151633	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	185	11	204	4	35	35	0	0	0
RHOA	387	bcgsc.ca	37	3	49397659	49397659	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	232	13	203	2	1389	1388	1	0	0
DAG1	1605	ucsc.edu;bcgsc.ca	37	3	49569639	49569639	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	30	5	38	0	138	138	0	0	0
GNAT1	2779	bcgsc.ca	37	3	50230725	50230725	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	115	9	106	0	0	0	0	0	0
VPRBP	9730	ucsc.edu	37	3	51458020	51458020	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	41	4	47	0	10	10	0	0	0
WDR82	80335	bcgsc.ca	37	3	52294457	52294457	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	94	7	87	0	33	33	0	0	0
DNAH1	25981	ucsc.edu	37	3	52356491	52356491	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	48	5	64	0	1	1	0	0	0
STAB1	23166	ucsc.edu	37	3	52537076	52537076	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	19	4	15	0	2	2	0	0	0
RFT1	91869	ucsc.edu	37	3	53155743	53155743	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	36	4	37	0	31	31	0	0	0
CACNA1D	776	ucsc.edu	37	3	53765114	53765114	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	26	4	26	0	0	0	0	0	0
CACNA1D	776	ucsc.edu	37	3	53844187	53844187	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	33	5	54	0	12	12	0	0	0
FLNB	2317	ucsc.edu	37	3	58094280	58094280	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	51	5	62	0	42	42	0	0	0
PDZRN3	23024	broad.mit.edu;bcgsc.ca	37	3	73440201	73440201	+	Missense_Mutation	SNP	C	C	T	rs200273452		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	386	15	417	0	3	3	0	0	0
ARL13B	200894	ucsc.edu	37	3	93714739	93714739	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	34	4	27	0	4	4	0	0	0
ARHGAP31	57514	ucsc.edu	37	3	119133144	119133144	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	63	6	88	1	3	3	0	0	0
POLQ	10721	ucsc.edu	37	3	121264655	121264655	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	36	5	33	0	0	0	0	0	0
MYLK	4638	bcgsc.ca	37	3	123359180	123359180	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	139	8	157	2	16	16	0	0	0
UROC1	131669	bcgsc.ca	37	3	126217016	126217016	+	Splice_Site	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	128	11	168	2	0	0	0	0	0
ATP2C1	27032	broad.mit.edu;bcgsc.ca	37	3	130673864	130673864	+	Silent	SNP	C	C	T	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	51	16	61	0	0	0	0	0	0
DNAJC13	23317	ucsc.edu	37	3	132235652	132235652	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	33	4	37	0	0	0	0	0	0
TRIM42	287015	ucsc.edu	37	3	140406952	140406952	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	42	5	52	0	0	0	0	0	0
DHX36	170506	bcgsc.ca	37	3	154021159	154021159	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	136	9	126	0	7	7	0	0	0
SHOX2	6474	ucsc.edu	37	3	157817665	157817665	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	71	7	94	1	0	0	0	0	0
SPATA16	83893	ucsc.edu	37	3	172674467	172674467	+	Missense_Mutation	SNP	C	C	A	rs149140561	alternate_allele	TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	54	5	78	0	0	0	0	0	0
EPHB3	2049	bcgsc.ca	37	3	184290594	184290594	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	85	7	89	1	0	0	0	0	0
VPS8	23355	ucsc.edu	37	3	184689538	184689538	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	38	4	36	0	0	0	0	0	0
ETV5	2119	ucsc.edu	37	3	185823655	185823655	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	46	5	35	0	13	13	0	0	0
ATP13A5	344905	ucsc.edu	37	3	193044825	193044825	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	37	4	66	1	0	0	0	0	0
MUC4	4585	bcgsc.ca	37	3	195497195	195497195	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	109	8	111	0	0	0	0	0	0
MFSD7	84179	ucsc.edu	37	4	676633	676633	+	Missense_Mutation	SNP	C	C	A	rs140349166	alternate_allele	TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	27	4	33	0	3	3	0	0	0
GAK	2580	ucsc.edu	37	4	887708	887708	+	Silent	SNP	C	C	A	rs181152973	alternate_allele	TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	41	4	50	0	45	45	0	0	0
RGS12	6002	ucsc.edu	37	4	3432262	3432262	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	40	5	49	0	37	37	0	0	0
FAM86EP	348926	ucsc.edu	37	4	3949619	3949619	+	RNA	SNP	G	G	T	rs62289008	byfrequency;alternate_allele	TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	50	5	46	0	16	16	0	0	0
AFAP1	60312	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	7857226	7857226	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	60	26	88	0	2	0	2	0	0
RBPJ	3516	bcgsc.ca	37	4	26426306	26426306	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	155	10	139	0	34	34	0	0	0
TLR6	10333	bcgsc.ca	37	4	38828860	38828860	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	233	13	263	2	2	2	0	0	0
GABRA4	2557	bcgsc.ca	37	4	46930603	46930603	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	185	13	177	4	0	0	0	0	0
LNX1	84708	bcgsc.ca	37	4	54362326	54362326	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	205	14	240	4	6	6	0	0	0
KIAA1211	57482	ucsc.edu	37	4	57182796	57182796	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	25	4	30	0	1	1	0	0	0
LPHN3	23284	ucsc.edu	37	4	62894579	62894579	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	35	4	32	0	0	0	0	0	0
UGT2A1	10941	ucsc.edu	37	4	70513301	70513301	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	50	5	45	0	0	0	0	0	0
ADAMTS3	9508	bcgsc.ca	37	4	73169752	73169752	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	296	16	294	4	2	2	0	0	0
AFP	174	bcgsc.ca	37	4	74310808	74310808	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	107	9	122	1	0	0	0	0	0
FRAS1	80144	ucsc.edu	37	4	79321987	79321987	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	35	4	37	0	8	8	0	0	0
MAPK10	5602	bcgsc.ca	37	4	86985419	86985419	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	163	9	183	2	0	0	0	0	0
SMARCAD1	56916	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	95191935	95191935	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	123	47	164	0	23	9	14	0	0
ADH7	131	bcgsc.ca	37	4	100349065	100349065	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	186	10	194	1	0	0	0	0	0
GSTCD	79807	ucsc.edu	37	4	106766699	106766699	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	61	6	89	0	5	5	0	0	0
ELOVL6	79071	ucsc.edu	37	4	111026771	111026771	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	42	4	36	1	0	0	0	0	0
MIR367	442912	ucsc.edu	37	4	113569056	113569056	+	RNA	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	53	5	41	0	0	0	0	0	0
PLK4	10733	bcgsc.ca	37	4	128807324	128807324	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	145	8	151	1	2	2	0	0	0
SCLT1	132320	ucsc.edu	37	4	129964550	129964550	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	47	5	62	0	0	0	0	0	0
PCDH10	57575	bcgsc.ca	37	4	134076135	134076135	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	175	13	140	1	0	0	0	0	0
PCDH18	54510	ucsc.edu	37	4	138452128	138452128	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	46	4	72	1	0	0	0	0	0
PCDH18	54510	bcgsc.ca	37	4	138452626	138452626	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	82	6	94	0	0	0	0	0	0
INPP4B	8821	ucsc.edu	37	4	143045861	143045861	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	51	6	47	0	9	9	0	0	0
MMAA	166785	ucsc.edu	37	4	146560730	146560730	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	32	4	38	0	0	0	0	0	0
ZNF827	152485	ucsc.edu	37	4	146695811	146695811	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	51	5	59	1	1	1	0	0	0
TRIM2	23321	ucsc.edu	37	4	154216704	154216704	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	39	4	48	0	7	7	0	0	0
RAPGEF2	9693	bcgsc.ca	37	4	160260394	160260394	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	213	11	228	1	8	8	0	0	0
RAPGEF2	9693	ucsc.edu	37	4	160264172	160264172	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	40	5	45	1	7	7	0	0	0
FAT1	2195	ucsc.edu	37	4	187532832	187532832	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	24	5	28	0	76	76	0	0	0
AHRR	57491	ucsc.edu	37	5	422949	422949	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	47	6	63	0	0	0	0	0	0
NKD2	85409	ucsc.edu	37	5	1034370	1034370	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	44	4	58	0	3	3	0	0	0
SDHAP3	728609	ucsc.edu	37	5	1576334	1576334	+	RNA	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	43	4	42	0	17	17	0	0	0
KIAA0947	23379	ucsc.edu	37	5	5461824	5461824	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	40	4	49	0	7	7	0	0	0
MYO10	4651	ucsc.edu	37	5	16701576	16701576	+	Silent	SNP	G	G	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	52	5	75	0	27	27	0	0	0
PDZD2	23037	ucsc.edu	37	5	32074080	32074080	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	46	4	67	0	0	0	0	0	0
PDZD2	23037	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	32108145	32108145	+	Silent	SNP	G	G	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	125	54	125	0	2	2	0	0	0
ADAMTS12	81792	ucsc.edu	37	5	33614349	33614349	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	33	4	30	0	0	0	0	0	0
RXFP3	51289	ucsc.edu	37	5	33938237	33938237	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	29	4	41	0	0	0	0	0	0
PARP8	79668	ucsc.edu	37	5	50137879	50137879	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	42	4	56	2	16	16	0	0	0
ISL1	3670	ucsc.edu	37	5	50683452	50683452	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	52	5	60	1	0	0	0	0	0
MRPS36	92259	ucsc.edu	37	5	68513663	68513663	+	Missense_Mutation	SNP	G	G	T	rs148995834	alternate_allele	TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	41	4	80	0	73	73	0	0	0
POLK	51426	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	74872636	74872636	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	54	24	79	0	11	5	6	0	0
CMYA5	202333	ucsc.edu	37	5	79028206	79028206	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	39	4	35	0	3	3	0	0	0
ZFYVE16	9765	ucsc.edu	37	5	79752787	79752787	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	56	6	59	0	12	12	0	0	0
VCAN	1462	bcgsc.ca	37	5	82835412	82835412	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	132	9	137	2	108	108	0	0	0
GPR98	84059	ucsc.edu	37	5	90149334	90149334	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	32	4	32	0	0	0	0	0	0
FAM170A	340069	bcgsc.ca	37	5	118969684	118969684	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	84	8	82	0	1	1	0	0	0
CEP120	153241	bcgsc.ca	37	5	122717834	122717834	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	125	8	156	3	10	10	0	0	0
CEP120	153241	ucsc.edu	37	5	122751704	122751704	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	42	4	34	0	0	0	0	0	0
ZNF608	57507	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	123983889	123983889	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	47	21	40	1	3	2	1	0	0
FNIP1	96459	bcgsc.ca	37	5	131007965	131007965	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	198	11	240	3	6	6	0	0	0
C5orf56	441108	ucsc.edu	37	5	131796464	131796464	+	RNA	SNP	G	G	T	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	36	4	19	0	0	0	0	0	0
TXNDC15	79770	bcgsc.ca	37	5	134229209	134229209	+	Missense_Mutation	SNP	G	G	T	rs147527860	alternate_allele	TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	224	14	229	2	45	45	0	0	0
MYOT	9499	bcgsc.ca	37	5	137223013	137223013	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	89	7	96	1	1	1	0	0	0
KIF20A	10112	bcgsc.ca	37	5	137519793	137519793	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	154	8	118	0	0	0	0	0	0
KDM3B	51780	ucsc.edu	37	5	137728992	137728992	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	38	4	88	0	45	45	0	0	0
PCDHB5	26167	bcgsc.ca	37	5	140517252	140517252	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	251	12	256	5	0	0	0	0	0
PCDHGC3	5098	ucsc.edu	37	5	140856357	140856357	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	33	4	44	0	10	10	0	0	0
ARHGAP26	23092	bcgsc.ca	37	5	142500599	142500599	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	241	12	244	3	7	7	0	0	0
KCTD16	57528	bcgsc.ca	37	5	143853613	143853613	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	134	9	123	1	5	5	0	0	0
SLC6A7	6534	ucsc.edu	37	5	149576796	149576796	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	42	4	42	0	0	0	0	0	0
FAT2	2196	ucsc.edu	37	5	150920163	150920163	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	37	5	34	0	0	0	0	0	0
TIMD4	91937	ucsc.edu	37	5	156346471	156346471	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	52	5	70	0	34	34	0	0	0
SOX30	11063	ucsc.edu	37	5	157065352	157065352	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	37	4	49	1	0	0	0	0	0
ATP10B	23120	bcgsc.ca	37	5	160033934	160033934	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	180	11	192	3	0	0	0	0	0
SLIT3	6586	ucsc.edu	37	5	168112856	168112856	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	42	5	48	0	3	3	0	0	0
STK10	6793	bcgsc.ca	37	5	171491789	171491789	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	96	7	99	0	7	7	0	0	0
STC2	8614	ucsc.edu	37	5	172750267	172750267	+	Missense_Mutation	SNP	C	C	A	rs144381958	byfrequency;alternate_allele	TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	53	5	66	0	3	3	0	0	0
LMAN2	10960	bcgsc.ca	37	5	176778482	176778482	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	124	8	91	0	295	295	0	0	0
NHP2	55651	ucsc.edu	37	5	177580760	177580760	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	28	4	21	0	239	239	0	0	0
ADAMTS2	9509	ucsc.edu	37	5	178541173	178541173	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	53	5	59	1	0	0	0	0	0
ADAMTS2	9509	ucsc.edu	37	5	178559863	178559863	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	36	4	42	0	0	0	0	0	0
MAML1	9794	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	179192887	179192887	+	Silent	SNP	G	G	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	146	68	164	0	8	7	1	0	0
BMP6	654	bcgsc.ca	37	6	7880269	7880269	+	Nonsense_Mutation	SNP	G	G	T	rs140519057	alternate_allele	TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	106	8	129	0	4	4	0	0	0
BLOC1S5-TXNDC5	100526836	ucsc.edu	37	6	8064611	8064611	+	RNA	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	46	5	34	0	0	0	0	0	0
NHLRC1	378884	bcgsc.ca	37	6	18121848	18121848	+	Missense_Mutation	SNP	C	C	A	rs148553723	byfrequency;alternate_allele	TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	148	9	155	2	7	7	0	0	0
BTN3A1	11119	bcgsc.ca	37	6	26408027	26408027	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	131	9	143	1	16	16	0	0	0
BTN3A3	10384	ucsc.edu	37	6	26452559	26452559	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	58	6	65	0	16	16	0	0	0
HIST1H2BO	8348	bcgsc.ca	37	6	27861393	27861393	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	228	13	213	2	0	0	0	0	0
HLA-J	3137	ucsc.edu	37	6	29976078	29976078	+	RNA	SNP	G	G	T	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	62	6	55	1	14014	14003	7	2	2
PPP1R11	6992	bcgsc.ca	37	6	30037035	30037035	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	123	9	125	2	95	95	0	0	0
PPP1R10	5514	bcgsc.ca	37	6	30571827	30571827	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	208	14	200	4	10	10	0	0	0
CCHCR1	54535	ucsc.edu	37	6	31112965	31112965	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	45	5	63	0	134	134	0	0	0
POU5F1	5460	ucsc.edu	37	6	31138094	31138094	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	46	5	69	1	3	2	0	0	1
DDX39B	7919	ucsc.edu	37	6	31498888	31498888	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	41	4	66	1	298	298	0	0	0
PRRC2A	7916	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	31595867	31595867	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	136	55	159	0	89	52	36	0	1
TNXB	7148	ucsc.edu	37	6	32014148	32014148	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	38	4	55	0	2	2	0	0	0
PPT2	9374	bcgsc.ca	37	6	32130594	32130594	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	217	12	216	4	1	1	0	0	0
BTNL2	56244	bcgsc.ca	37	6	32362638	32362638	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	171	10	230	5	0	0	0	0	0
TAP1	6890	ucsc.edu	37	6	32818275	32818275	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	53	6	58	1	133	133	0	0	0
SLC39A7	7922	ucsc.edu	37	6	33170390	33170390	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	50	5	57	1	78	78	0	0	0
RGL2	5863	ucsc.edu	37	6	33264472	33264472	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	44	5	68	0	26	26	0	0	0
LEMD2	221496	bcgsc.ca	37	6	33746156	33746156	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	145	10	142	2	0	0	0	0	0
GRM4	2914	ucsc.edu	37	6	34100820	34100820	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	39	4	46	0	0	0	0	0	0
PPIL1	51645	ucsc.edu;bcgsc.ca	37	6	36824427	36824427	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	49	6	65	0	0	0	0	0	0
FGD2	221472	ucsc.edu	37	6	36995880	36995880	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	44	4	44	0	3	3	0	0	0
CCDC167	154467	ucsc.edu	37	6	37451061	37451061	+	Missense_Mutation	SNP	C	C	A	rs148157970	alternate_allele	TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	62	6	71	2	0	0	0	0	0
DAAM2	23500	ucsc.edu	37	6	39859122	39859122	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	24	4	20	0	0	0	0	0	0
NCR2	9436	ucsc.edu	37	6	41309642	41309642	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	41	4	50	0	0	0	0	0	0
TFEB	7942	ucsc.edu	37	6	41657469	41657469	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	44	4	49	0	0	0	0	0	0
PRICKLE4	29964	ucsc.edu	37	6	41753120	41753120	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	40	4	53	0	8	8	0	0	0
C6orf226	441150	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	42858492	42858492	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	86	30	128	1	29	14	15	0	0
CUL7	9820	ucsc.edu	37	6	43006144	43006144	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	68	7	78	0	66	66	0	0	0
CUL7	9820	ucsc.edu	37	6	43013796	43013796	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	44	6	50	0	30	30	0	0	0
LRRC73	221424	ucsc.edu	37	6	43475408	43475408	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	38	4	48	0	0	0	0	0	0
TMEM63B	55362	bcgsc.ca	37	6	44121850	44121850	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	168	10	178	1	57	57	0	0	0
SLC29A1	2030	bcgsc.ca	37	6	44197180	44197180	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	184	12	162	2	46	46	0	0	0
PKHD1	5314	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	51917922	51917922	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	62	25	85	0	14	11	3	0	0
COL21A1	81578	ucsc.edu	37	6	55935546	55935546	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	22	4	32	0	0	0	0	0	0
EYS	346007	bcgsc.ca	37	6	66205227	66205227	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	111	7	125	0	0	0	0	0	0
COL12A1	1303	bcgsc.ca	37	6	75864168	75864168	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	102	10	98	2	0	0	0	0	0
FILIP1	27145	bcgsc.ca	37	6	76023677	76023677	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	341	13	346	4	2	2	0	0	0
IRAK1BP1	134728	ucsc.edu	37	6	79608021	79608021	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	41	5	36	0	8	8	0	0	0
CYB5R4	51167	bcgsc.ca	37	6	84649774	84649774	+	Splice_Site	SNP	G	G	T	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	144	9	147	1	0	0	0	0	0
SERINC1	57515	ucsc.edu	37	6	122777758	122777758	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	47	5	55	1	80	80	0	0	0
NCOA7	135112	ucsc.edu	37	6	126210896	126210896	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	59	6	65	0	10	10	0	0	0
KIAA0408	9729	ucsc.edu	37	6	127765260	127765260	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	40	4	55	0	13	13	0	0	0
SOGA3	387104	bcgsc.ca	37	6	127797273	127797273	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	146	8	164	2	2	2	0	0	0
PTPRK	5796	ucsc.edu	37	6	128297928	128297928	+	Splice_Site	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	42	4	44	0	0	0	0	0	0
L3MBTL3	84456	ucsc.edu	37	6	130374136	130374136	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	39	4	40	0	0	0	0	0	0
REPS1	85021	ucsc.edu	37	6	139266392	139266392	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	23	4	25	0	29	29	0	0	0
WDR27	253769	bcgsc.ca	37	6	170036578	170036578	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	75	7	112	0	1	1	0	0	0
INTS1	26173	ucsc.edu	37	7	1539868	1539868	+	Missense_Mutation	SNP	G	G	T	rs199632214	alternate_allele	TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	26	4	20	0	32	32	0	0	0
BRAT1	221927	ucsc.edu	37	7	2579464	2579464	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	36	4	27	0	119	119	0	0	0
IQCE	23288	bcgsc.ca	37	7	2611887	2611887	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	146	9	101	1	3	3	0	0	0
PHF14	9678	bcgsc.ca	37	7	11068426	11068426	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	152	10	120	2	28	28	0	0	0
THSD7A	221981	bcgsc.ca	37	7	11464362	11464362	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	432	19	317	3	7	7	0	0	0
SNX13	23161	ucsc.edu	37	7	17843168	17843168	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	41	4	31	0	15	15	0	0	0
HDAC9	9734	ucsc.edu	37	7	18767325	18767325	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	43	4	23	0	0	0	0	0	0
NUPL2	11097	ucsc.edu	37	7	23221782	23221782	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	42	6	35	0	27	27	0	0	0
HOXA11	3207	bcgsc.ca	37	7	27222531	27222531	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	167	10	121	1	0	0	0	0	0
TAX1BP1	8887	bcgsc.ca	37	7	27868351	27868351	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	215	10	149	2	145	144	0	0	1
AOAH	313	ucsc.edu	37	7	36579928	36579928	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	35	4	44	0	1	1	0	0	0
CCM2	83605	bcgsc.ca	37	7	45115394	45115394	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	139	9	106	0	82	82	0	0	0
DDC	1644	bcgsc.ca	37	7	50534972	50534972	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	220	11	177	0	60	60	0	0	0
GBAS	2631	ucsc.edu	37	7	56049937	56049937	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	40	4	35	0	154	154	0	0	0
PSPH	5723	bcgsc.ca	37	7	56088777	56088777	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	335	16	233	2	0	0	0	0	0
CLIP2	7461	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	73752800	73752800	+	Silent	SNP	A	A	T	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	29	18	19	0	37	8	29	0	0
PHTF2	57157	ucsc.edu	37	7	77531222	77531222	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	49	5	26	0	6	6	0	0	0
MAGI2	9863	bcgsc.ca	37	7	77764491	77764491	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	136	9	107	0	0	0	0	0	0
SEMA3A	10371	ucsc.edu	37	7	83610728	83610728	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	35	4	28	0	0	0	0	0	0
CROT	54677	bcgsc.ca	37	7	87022321	87022321	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	274	14	211	1	7	7	0	0	0
C7orf63	79846	bcgsc.ca	37	7	89874822	89874822	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	311	12	244	3	1	1	0	0	0
ACN9	57001	bcgsc.ca	37	7	96747109	96747109	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	132	8	113	0	31	31	0	0	0
OCM2	4951	bcgsc.ca	37	7	97617753	97617753	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	147	9	105	0	0	0	0	0	0
TRRAP	8295	ucsc.edu	37	7	98555693	98555693	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	37	4	43	0	1	1	0	0	0
ZNF3	7551	bcgsc.ca	37	7	99672776	99672776	+	Missense_Mutation	SNP	C	C	A	rs201245775	alternate_allele	TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	294	13	194	2	15	15	0	0	0
MEPCE	56257	bcgsc.ca	37	7	100028156	100028156	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	158	12	106	1	35	35	0	0	0
GIGYF1	64599	bcgsc.ca	37	7	100281030	100281030	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	375	17	229	4	49	49	0	0	0
UFSP1	402682	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	100486530	100486530	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	197	106	153	0	0	0	0	0	0
ORAI2	80228	bcgsc.ca	37	7	102079482	102079482	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	166	9	146	0	38	38	0	0	0
LRRC17	10234	bcgsc.ca	37	7	102574491	102574491	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	98	7	63	1	2	2	0	0	0
RELN	5649	ucsc.edu;bcgsc.ca	37	7	103151359	103151359	+	Missense_Mutation	SNP	C	C	A	rs141115137		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	66	7	43	0	6	6	0	0	0
WNT16	51384	ucsc.edu	37	7	120969393	120969393	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	31	5	18	0	0	0	0	0	0
CADPS2	93664	ucsc.edu	37	7	122526104	122526104	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	41	4	17	0	4	4	0	0	0
TAS2R16	50833	bcgsc.ca	37	7	122634825	122634825	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	349	16	245	2	0	0	0	0	0
SPAM1	6677	bcgsc.ca	37	7	123594290	123594290	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	151	8	125	0	0	0	0	0	0
SND1-IT1	27099	bcgsc.ca	37	7	127638106	127638106	+	RNA	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	118	9	95	0	0	0	0	0	0
IMPDH1	3614	ucsc.edu	37	7	128040477	128040477	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	34	4	28	0	24	24	0	0	0
CCDC136	64753	bcgsc.ca	37	7	128445541	128445541	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	364	14	261	2	0	0	0	0	0
TNPO3	23534	bcgsc.ca	37	7	128630155	128630155	+	Splice_Site	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	181	10	141	2	1	1	0	0	0
TPI1P2	286016	bcgsc.ca	37	7	128696575	128696575	+	RNA	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	148	11	102	1	2	2	0	0	0
KLHDC10	23008	bcgsc.ca	37	7	129767258	129767258	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	146	8	113	1	16	16	0	0	0
CHCHD3	54927	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	132754922	132754922	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	82	17	71	0	99	62	37	0	0
EXOC4	60412	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	133692515	133692515	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	83	36	63	0	62	50	12	0	0
EXOC4	60412	ucsc.edu	37	7	133749169	133749169	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	54	6	72	0	0	0	0	0	0
FAM180A	389558	bcgsc.ca	37	7	135433321	135433321	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	357	14	268	3	0	0	0	0	0
MIR490	574443	bcgsc.ca	37	7	136588031	136588031	+	RNA	SNP	G	G	T	rs201557193	alternate_allele	TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	186	9	120	0	0	0	0	0	0
CHRM2	1129	bcgsc.ca	37	7	136699730	136699730	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	162	9	123	0	0	0	0	0	0
CREB3L2	64764	bcgsc.ca	37	7	137586133	137586133	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	138	9	92	0	4	4	0	0	0
KIAA1549	57670	ucsc.edu	37	7	138552869	138552869	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	44	4	42	0	0	0	0	0	0
KIAA1549	57670	bcgsc.ca	37	7	138583855	138583855	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	406	17	307	5	0	0	0	0	0
KIAA1549	57670	broad.mit.edu;ucsc.edu	37	7	138595898	138595898	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	28	9	14	0	0	0	0	0	0
MGAM	8972	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	141750617	141750617	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	196	41	147	0	0	0	0	0	0
OR2F1	26211	bcgsc.ca	37	7	143657509	143657509	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	145	91	108	4	0	0	0	0	0
SSPO	23145	ucsc.edu	37	7	149506139	149506139	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	36	4	38	0	0	0	0	0	0
AGAP3	116988	bcgsc.ca	37	7	150815344	150815344	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	146	8	123	1	59	59	0	0	0
SMARCD3	6604	bcgsc.ca	37	7	150939302	150939302	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	240	9	196	1	77	77	0	0	0
PTPRN2	5799	broad.mit.edu	37	7	157414139	157414139	+	Silent	SNP	G	G	A	rs77143062		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	395	15	287	0	0	0	0	0	0
C8orf42	157695	ucsc.edu	37	8	442415	442415	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	14	4	27	0	20	20	0	0	0
TNKS	8658	ucsc.edu	37	8	9605677	9605677	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	50	5	39	1	4	4	0	0	0
RP1L1	94137	ucsc.edu	37	8	10468049	10468049	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	40	6	45	0	0	0	0	0	0
PCM1	5108	ucsc.edu	37	8	17868857	17868857	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	37	4	34	0	14	14	0	0	0
SH2D4A	63898	ucsc.edu	37	8	19231159	19231159	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	37	4	39	0	0	0	0	0	0
ATP6V1B2	526	bcgsc.ca	37	8	20068083	20068083	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	216	9	225	1	0	0	0	0	0
ATP6V1B2	526	ucsc.edu	37	8	20072342	20072342	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	56	6	69	1	118	118	0	0	0
LZTS1	11178	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	20107305	20107305	+	Silent	SNP	G	G	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	124	56	132	0	1	1	0	0	0
XPO7	23039	ucsc.edu	37	8	21860741	21860741	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	39	4	23	0	0	0	0	0	0
FAM160B2	64760	bcgsc.ca	37	8	21958400	21958400	+	Silent	SNP	C	C	A	rs138222967	alternate_allele	TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	113	7	154	0	56	56	0	0	0
FAM160B2	64760	ucsc.edu	37	8	21958990	21958990	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	25	4	36	0	35	35	0	0	0
PPP2R2A	5520	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	26227846	26227849	+	Frame_Shift_Del	DEL	CACA	CACA	-	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	CACA	CACA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	47	12	54	0	0	0	0	0	0
INTS9	55756	ucsc.edu	37	8	28635400	28635400	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	60	6	69	0	6	6	0	0	0
GPR124	25960	bcgsc.ca	37	8	37686441	37686441	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	96	7	119	0	2	2	0	0	0
DDHD2	23259	ucsc.edu	37	8	38110633	38110633	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	32	4	32	0	0	0	0	0	0
KAT6A	7994	broad.mit.edu	37	8	41798420	41798422	+	In_Frame_Del	DEL	CTC	CTC	-	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	CTC	CTC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	185	7	175	0	0	0	0	0	0
CHRNB3	1142	ucsc.edu	37	8	42565550	42565550	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	40	4	41	0	0	0	0	0	0
KIAA0146	23514	ucsc.edu;bcgsc.ca	37	8	48641587	48641587	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	29	5	51	0	45	44	0	0	1
ST18	9705	hgsc.bcm.edu;bcgsc.ca	37	8	53025828	53025828	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	100	8	95	1	0	0	0	0	0
CHD7	55636	ucsc.edu	37	8	61729036	61729036	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	37	4	29	0	1	1	0	0	0
SLCO5A1	81796	ucsc.edu	37	8	70667869	70667869	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	36	4	38	0	0	0	0	0	0
ZNF704	619279	bcgsc.ca	37	8	81582796	81582796	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	115	8	102	0	1	1	0	0	0
TP53INP1	94241	ucsc.edu	37	8	95944335	95944335	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	37	4	31	0	1	1	0	0	0
MTDH	92140	bcgsc.ca	37	8	98736856	98736856	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	156	12	154	0	122	122	0	0	0
GRHL2	79977	ucsc.edu	37	8	102661727	102661727	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	33	4	33	0	0	0	0	0	0
UBR5	51366	bcgsc.ca	37	8	103309793	103309793	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	98	8	81	1	7	7	0	0	0
UBR5	51366	ucsc.edu;bcgsc.ca	37	8	103310707	103310707	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	40	6	39	0	0	0	0	0	0
PKHD1L1	93035	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	110451259	110451259	+	Silent	SNP	G	G	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	212	81	249	0	0	0	0	0	0
TRPS1	7227	bcgsc.ca	37	8	116599487	116599487	+	Missense_Mutation	SNP	C	C	A	rs146506752		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	304	13	323	3	3	3	0	0	0
COL14A1	7373	bcgsc.ca	37	8	121279108	121279108	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	269	12	247	3	0	0	0	0	0
TATDN1	83940	ucsc.edu	37	8	125528004	125528004	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	33	4	50	0	25	24	1	0	0
KIAA0196	9897	ucsc.edu;bcgsc.ca	37	8	126095474	126095474	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	53	7	72	0	13	13	0	0	0
NDRG1	10397	ucsc.edu	37	8	134266786	134266786	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	42	4	49	0	0	0	0	0	0
COL22A1	169044	bcgsc.ca	37	8	139715563	139715563	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	105	7	121	1	0	0	0	0	0
DENND3	22898	bcgsc.ca	37	8	142176397	142176397	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	122	11	163	2	9	9	0	0	0
RHPN1	114822	ucsc.edu	37	8	144457768	144457768	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	39	4	79	0	18	18	0	0	0
PLEC	5339	ucsc.edu;bcgsc.ca	37	8	145011406	145011406	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	39	5	64	0	0	0	0	0	0
FOXH1	8928	ucsc.edu	37	8	145699934	145699934	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	38	4	41	0	0	0	0	0	0
ZNF250	58500	ucsc.edu	37	8	146107241	146107241	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	63	6	64	0	48	48	0	0	0
SMARCA2	6595	ucsc.edu	37	9	2056823	2056823	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	25	4	36	0	33	33	0	0	0
CCDC171	203238	ucsc.edu;bcgsc.ca	37	9	15779038	15779038	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	62	7	57	0	0	0	0	0	0
DENND4C	55667	bcgsc.ca	37	9	19296236	19296236	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	185	10	221	3	0	0	0	0	0
NDUFB6	4712	ucsc.edu	37	9	32573042	32573042	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	39	4	39	0	168	168	0	0	0
APTX	54840	bcgsc.ca	37	9	32987575	32987575	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	169	10	179	1	41	41	0	0	0
NOL6	65083	ucsc.edu;bcgsc.ca	37	9	33472027	33472027	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	84	8	97	0	20	20	0	0	0
TLN1	7094	bcgsc.ca	37	9	35711689	35711689	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	149	8	159	3	90	90	0	0	0
SEMA4D	10507	ucsc.edu	37	9	92011687	92011687	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	20	4	33	0	24	24	0	0	0
ROR2	4920	ucsc.edu	37	9	94487129	94487129	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	45	5	67	0	0	0	0	0	0
C9orf3	84909	bcgsc.ca	37	9	97718206	97718206	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	178	8	193	0	0	0	0	0	0
COL15A1	1306	ucsc.edu	37	9	101747895	101747895	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	50	6	36	0	1	1	0	0	0
BAAT	570	ucsc.edu	37	9	104130569	104130569	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	41	5	53	1	0	0	0	0	0
MUSK	4593	bcgsc.ca	37	9	113562828	113562828	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	255	12	271	3	0	0	0	0	0
PTGR1	22949	ucsc.edu	37	9	114332480	114332480	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	39	4	51	0	0	0	0	0	0
PRPF4	9128	ucsc.edu	37	9	116050531	116050531	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	51	6	45	0	0	0	0	0	0
RGS3	5998	broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	116269730	116269730	+	Missense_Mutation	SNP	C	C	T	rs200633658	alternate_allele	TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	47	18	56	1	16	7	9	0	0
FAM129B	64855	ucsc.edu;bcgsc.ca	37	9	130270436	130270436	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	63	6	93	0	273	273	0	0	0
C9orf114	51490	ucsc.edu	37	9	131586114	131586114	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	37	4	26	0	28	28	0	0	0
ASS1	445	ucsc.edu	37	9	133342123	133342123	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	40	4	43	0	0	0	0	0	0
AK8	158067	ucsc.edu	37	9	135601285	135601285	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	43	4	61	0	59	59	0	0	0
TSC1	7248	ucsc.edu	37	9	135781408	135781408	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	44	5	58	1	2	2	0	0	0
GTF3C5	9328	ucsc.edu	37	9	135929856	135929856	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	40	4	47	0	68	68	0	0	0
RALGDS	5900	ucsc.edu	37	9	135982632	135982632	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	53	5	47	0	26	26	0	0	0
RPL7A	6130	ucsc.edu	37	9	136217857	136217857	+	Silent	SNP	G	G	T	rs148963580	alternate_allele	TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	48	5	42	0	1	1	0	0	0
SARDH	1757	ucsc.edu	37	9	136536663	136536663	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	20	4	24	0	0	0	0	0	0
BRD3	8019	ucsc.edu	37	9	136901324	136901324	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	51	5	79	0	28	28	0	0	0
SEC16A	9919	ucsc.edu	37	9	139371326	139371326	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	35	4	35	0	7	7	0	0	0
NOTCH1	4851	ucsc.edu	37	9	139397719	139397719	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	58	6	61	0	9	9	0	0	0
DPP7	29952	ucsc.edu	37	9	140007894	140007894	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	38	4	58	0	192	191	0	1	0
VCX	26609	hgsc.bcm.edu	37	X	7812047	7812047	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	178	10	185	2	0	0	0	0	0
MAGEB18	286514	ucsc.edu	37	X	26157352	26157352	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	24	5	25	0	0	0	0	0	0
PRRG1	5638	bcgsc.ca	37	X	37312613	37312613	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	136	11	111	1	5	5	0	0	0
RPGR	6103	ucsc.edu	37	X	38182773	38182773	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	41	4	37	0	0	0	0	0	0
BCOR	54880	ucsc.edu	37	X	39913188	39913188	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	34	4	22	0	13	13	0	0	0
USP9X	8239	ucsc.edu	37	X	41055855	41055855	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	42	5	45	0	0	0	0	0	0
NYX	60506	hgsc.bcm.edu	37	X	41333524	41333524	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	27	2	20	0	0	0	0	0	0
PORCN	64840	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	X	48371012	48371012	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	11	11	15	0	0	0	0	0	0
WAS	7454	ucsc.edu	37	X	48545224	48545224	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	42	4	46	0	17	17	0	0	0
GRIPAP1	56850	ucsc.edu	37	X	48839466	48839466	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	36	4	50	0	38	38	0	0	0
CCDC120	90060	ucsc.edu	37	X	48922612	48922612	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	35	4	30	0	5	5	0	0	0
GPKOW	27238	ucsc.edu	37	X	48978846	48978846	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	20	4	39	0	29	29	0	0	0
FOXP3	50943	ucsc.edu	37	X	49108198	49108198	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	33	4	41	0	3	3	0	0	0
CCNB3	85417	ucsc.edu	37	X	50051761	50051761	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	47	5	43	0	1	1	0	0	0
BMP15	9210	ucsc.edu	37	X	50659504	50659504	+	Missense_Mutation	SNP	C	C	A	rs202240385	alternate_allele	TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	38	5	38	0	0	0	0	0	0
GNL3L	54552	ucsc.edu	37	X	54570663	54570663	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	25	4	25	0	0	0	0	0	0
RRAGB	10325	ucsc.edu	37	X	55779882	55779882	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	38	4	29	0	45	45	0	0	0
MTMR8	55613	ucsc.edu	37	X	63488503	63488503	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	43	4	27	0	1	1	0	0	0
MTMR8	55613	ucsc.edu	37	X	63551513	63551513	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	27	4	32	1	1	1	0	0	0
FOXO4	4303	ucsc.edu	37	X	70321390	70321390	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	53	5	44	0	9	9	0	0	0
NONO	4841	ucsc.edu	37	X	70516420	70516420	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	38	4	22	0	0	0	0	0	0
PHKA1	5255	ucsc.edu	37	X	71932674	71932674	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	29	4	35	0	5	5	0	0	0
SLC16A2	6567	ucsc.edu	37	X	73749093	73749093	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	31	4	35	0	9	9	0	0	0
MAGEE1	57692	ucsc.edu	37	X	75648749	75648749	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	35	4	45	0	1	1	0	0	0
MAGEE1	57692	ucsc.edu	37	X	75650193	75650193	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	31	4	39	0	7	7	0	0	0
FGF16	8823	ucsc.edu	37	X	76711903	76711903	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	40	4	56	1	0	0	0	0	0
DACH2	117154	ucsc.edu	37	X	85969713	85969713	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	44	5	54	1	0	0	0	0	0
DIAPH2	1730	ucsc.edu	37	X	96185820	96185820	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	42	4	42	1	6	6	0	0	0
DIAPH2	1730	ucsc.edu	37	X	96212897	96212897	+	Missense_Mutation	SNP	C	C	A	rs200278082	alternate_allele	TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	22	4	17	0	4	4	0	0	0
TSC22D3	1831	ucsc.edu	37	X	106957786	106957786	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	42	4	38	0	254	254	0	0	0
PSMD10	5716	bcgsc.ca	37	X	107334702	107334702	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	157	9	125	1	88	88	0	0	0
ALG13	79868	ucsc.edu	37	X	110951420	110951420	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	41	4	43	0	0	0	0	0	0
SLC6A14	11254	ucsc.edu	37	X	115576126	115576126	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	43	5	64	0	0	0	0	0	0
DOCK11	139818	ucsc.edu	37	X	117770316	117770316	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	42	4	33	0	0	0	0	0	0
KIAA1210	57481	ucsc.edu	37	X	118223342	118223342	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	35	4	44	0	0	0	0	0	0
XPNPEP2	7512	ucsc.edu	37	X	128902382	128902382	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	35	4	42	0	1	1	0	0	0
IGSF1	3547	bcgsc.ca	37	X	130409104	130409104	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	232	13	252	3	1	1	0	0	0
IGSF1	3547	bcgsc.ca	37	X	130411040	130411040	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	268	11	299	3	2	2	0	0	0
ARHGEF6	9459	ucsc.edu	37	X	135767983	135767983	+	Splice_Site	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	42	4	34	0	0	0	0	0	0
MAGEA4	4103	bcgsc.ca	37	X	151092925	151092925	+	Silent	SNP	C	C	A	rs199984362	alternate_allele	TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	116	9	125	1	0	0	0	0	0
ARHGAP4	393	ucsc.edu	37	X	153175669	153175669	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	36	4	25	0	7	7	0	0	0
FLNA	2316	ucsc.edu	37	X	153578138	153578138	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	31	4	25	0	666	665	1	0	0
FLNA	2316	ucsc.edu	37	X	153593563	153593563	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	73	7	68	0	135	135	0	0	0
F8	2157	bcgsc.ca	37	X	154134733	154134733	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	102	8	107	1	0	0	0	0	0
ITPKA	3706	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	15	41794669	41794670	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	80	29	67	0	0	0	0	0	0
NEB	4703	bcgsc.ca	37	2	152490361	152490362	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	375	160	405	0	0	0	0	0	0
SLC10A4	201780	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	48490947	48490948	+	Frame_Shift_Ins	INS	-	-	TC	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	67	16	63	0	0	0	0	0	0
EPS15L1	58513	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	16503123	16503124	+	Missense_Mutation	DNP	GT	GT	AA	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	GT	GT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	79	43	84	0	0	0	0	0	0
