Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	TTotCov	TVarCov	NTotCov	NVarCov	Trna_tot	Trna_ref	Trna_var	Trna_alt1	Trna_alt2
CDK11A	728642	ucsc.edu	37	1	1635263	1635263	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	33	4	34	0	0	0	0	0	0
CDK11B	984	ucsc.edu	37	1	1653140	1653140	+	Missense_Mutation	SNP	C	C	A	rs200953503	alternate_allele	TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	67	6	73	1	0	0	0	0	0
C1orf174	339448	ucsc.edu	37	1	3809554	3809554	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	28	4	41	0	0	0	0	0	0
KIF1B	23095	bcgsc.ca	37	1	10436616	10436616	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	251	10	252	4	0	0	0	0	0
MAD2L2	10459	ucsc.edu	37	1	11737606	11737606	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	50	5	108	1	0	0	0	0	0
VPS13D	55187	ucsc.edu	37	1	12309332	12309332	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	49	5	51	0	0	0	0	0	0
PLEKHM2	23207	ucsc.edu	37	1	16055189	16055189	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	24	4	23	0	45	45	0	0	0
PLEKHM2	23207	bcgsc.ca	37	1	16058510	16058510	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	39	10	41	1	68	44	24	0	0
ARHGEF10L	55160	ucsc.edu	37	1	18021764	18021764	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	42	5	51	0	0	0	0	0	0
EMC1	23065	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	19566346	19566346	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	81	28	91	0	12	5	7	0	0
AUNIP	79000	bcgsc.ca	37	1	26161737	26161737	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	79	7	97	1	0	0	0	0	0
UBXN11	91544	ucsc.edu	37	1	26629410	26629410	+	Splice_Site	SNP	C	C	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	38	4	42	0	0	0	0	0	0
SLC9A1	6548	ucsc.edu	37	1	27428248	27428248	+	Silent	SNP	G	G	T	rs137936112	alternate_allele	TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	33	4	29	0	30	30	0	0	0
LAPTM5	7805	ucsc.edu	37	1	31212780	31212780	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	40	4	37	0	0	0	0	0	0
PUM1	9698	ucsc.edu	37	1	31409543	31409543	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	36	4	50	0	44	44	0	0	0
COL16A1	1307	ucsc.edu	37	1	32124166	32124166	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	40	4	44	0	0	0	0	0	0
AGO1	26523	ucsc.edu;bcgsc.ca	37	1	36381140	36381140	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	19	5	23	0	0	0	0	0	0
STK40	83931	ucsc.edu	37	1	36809737	36809737	+	Nonsense_Mutation	SNP	C	C	A	rs199920883	alternate_allele	TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	43	4	52	0	23	23	0	0	0
BMP8B	656	ucsc.edu	37	1	40226212	40226212	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	49	5	63	0	1	1	0	0	0
MPL	4352	ucsc.edu	37	1	43818250	43818250	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	43	4	67	1	0	0	0	0	0
ST3GAL3	6487	bcgsc.ca	37	1	44363957	44363957	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	107	8	127	1	0	0	0	0	0
TOE1	114034	bcgsc.ca	37	1	45807620	45807620	+	Splice_Site	SNP	G	G	T	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	123	11	128	0	0	0	0	0	0
CMPK1	51727	ucsc.edu	37	1	47834269	47834269	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	50	5	56	0	92	92	0	0	0
OSBPL9	114883	bcgsc.ca	37	1	52227580	52227580	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	220	11	301	4	56	56	0	0	0
SCP2	6342	bcgsc.ca	37	1	53416540	53416540	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	144	8	201	2	48	48	0	0	0
CYB5RL	606495	ucsc.edu	37	1	54649913	54649913	+	Missense_Mutation	SNP	C	C	A	rs192581455	alternate_allele	TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	36	4	27	0	0	0	0	0	0
MROH7	374977	bcgsc.ca	37	1	55158099	55158099	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	152	10	158	1	0	0	0	0	0
JAK1	3716	ucsc.edu;bcgsc.ca	37	1	65330567	65330567	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	54	6	65	1	30	30	0	0	0
COL24A1	255631	ucsc.edu	37	1	86499599	86499599	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	50	5	51	0	0	0	0	0	0
GBP3	2635	ucsc.edu	37	1	89477567	89477567	+	Missense_Mutation	SNP	C	C	A	rs201314320	alternate_allele	TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	54	5	50	0	10	10	0	0	0
LRRC8D	55144	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	90399759	90399759	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	143	49	167	1	12	9	3	0	0
GFI1	2672	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	92948601	92948601	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	55	22	76	0	0	0	0	0	0
ABCA4	24	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	94506770	94506770	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	60	19	83	1	0	0	0	0	0
ABCA4	24	ucsc.edu	37	1	94514487	94514487	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	62	6	76	0	0	0	0	0	0
CELSR2	1952	bcgsc.ca	37	1	109807532	109807532	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	122	8	129	1	19	19	0	0	0
CTTNBP2NL	55917	bcgsc.ca	37	1	112998999	112998999	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	176	10	168	1	9	9	0	0	0
TTF2	8458	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	117633172	117633172	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	57	13	69	0	3	3	0	0	0
NBPF9	400818	broad.mit.edu	37	1	144823878	144823878	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	53	4	47	0	0	0	0	0	0
ANKRD34A	284615	ucsc.edu	37	1	145474304	145474304	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	45	5	47	0	1	1	0	0	0
POGZ	23126	bcgsc.ca	37	1	151396459	151396459	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	108	9	133	0	10	10	0	0	0
ADAR	103	bcgsc.ca	37	1	154574660	154574660	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	169	10	153	1	26	26	0	0	0
FCRL5	83416	bcgsc.ca	37	1	157494179	157494179	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	118	8	117	0	0	0	0	0	0
FCRL1	115350	ucsc.edu	37	1	157772405	157772405	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	37	4	33	0	1	1	0	0	0
SCYL3	57147	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	169824950	169824950	+	Silent	SNP	A	A	T	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	51	20	53	0	0	0	0	0	0
DNM3	26052	hgsc.bcm.edu;broad.mit.edu	37	1	171810797	171810797	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	28	11	16	0	0	0	0	0	0
SEC16B	89866	ucsc.edu	37	1	177928111	177928111	+	Splice_Site	SNP	C	C	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	30	4	29	0	0	0	0	0	0
MR1	3140	hgsc.bcm.edu;bcgsc.ca	37	1	181019230	181019230	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	99	7	112	0	37	37	0	0	0
NPL	80896	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	182775301	182775301	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	85	13	77	0	19	14	5	0	0
COLGALT2	23127	bcgsc.ca	37	1	183920210	183920210	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	513	17	562	5	0	0	0	0	0
EDEM3	80267	bcgsc.ca	37	1	184679560	184679560	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	232	14	257	1	14	14	0	0	0
HMCN1	83872	bcgsc.ca	37	1	185931711	185931711	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	171	11	152	2	0	0	0	0	0
PRG4	10216	ucsc.edu	37	1	186266028	186266028	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	48	5	66	1	0	0	0	0	0
TPR	7175	broad.mit.edu;bcgsc.ca	37	1	186324772	186324772	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	147	10	125	0	0	0	0	0	0
TMEM9	252839	ucsc.edu	37	1	201112948	201112948	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	62	6	48	0	0	0	0	0	0
LPGAT1	9926	ucsc.edu	37	1	211924303	211924303	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	56	6	59	0	0	0	0	0	0
CENPF	1063	ucsc.edu	37	1	214837111	214837111	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	33	4	41	0	2	2	0	0	0
ESRRG	2104	bcgsc.ca	37	1	216850468	216850468	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	123	9	143	0	2	2	0	0	0
SLC30A10	55532	bcgsc.ca	37	1	220091740	220091740	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	99	7	116	1	0	0	0	0	0
OBSCN	84033	ucsc.edu	37	1	228511073	228511073	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	27	5	28	0	0	0	0	0	0
OBSCN	84033	ucsc.edu	37	1	228560719	228560719	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	40	4	48	0	0	0	0	0	0
TAF5L	27097	bcgsc.ca	37	1	229730610	229730610	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	90	7	93	0	8	8	0	0	0
DIP2C	22982	ucsc.edu	37	10	323442	323442	+	Silent	SNP	C	C	A	rs141081864	alternate_allele	TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	41	4	66	0	15	15	0	0	0
AKR1C1	1645	bcgsc.ca	37	10	5011056	5011056	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	121	7	152	1	206	204	2	0	0
CDNF	441549	ucsc.edu	37	10	14879862	14879862	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	30	4	22	0	0	0	0	0	0
MLLT10	8028	bcgsc.ca	37	10	22021957	22021957	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	113	8	124	0	10	10	0	0	0
ARHGAP22	58504	ucsc.edu	37	10	49812831	49812831	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	43	5	62	0	4	4	0	0	0
BICC1	80114	bcgsc.ca	37	10	60560703	60560703	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	173	9	147	1	56	56	0	0	0
ANK3	288	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	61829643	61829643	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	69	32	70	0	0	0	0	0	0
COL13A1	1305	bcgsc.ca	37	10	71655331	71655331	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	87	8	82	0	0	0	0	0	0
COL13A1	1305	ucsc.edu	37	10	71690261	71690261	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	39	4	43	0	1	1	0	0	0
NODAL	4838	ucsc.edu	37	10	72195092	72195092	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	33	4	29	0	0	0	0	0	0
SYNPO2L	79933	ucsc.edu	37	10	75407899	75407899	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	39	4	31	0	0	0	0	0	0
ZSWIM8	23053	ucsc.edu	37	10	75558781	75558781	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	36	4	57	0	44	44	0	0	0
ZSWIM8	23053	ucsc.edu;bcgsc.ca	37	10	75558901	75558901	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	25	5	26	0	32	32	0	0	0
DLG5	9231	ucsc.edu	37	10	79567690	79567690	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	39	4	41	0	0	0	0	0	0
DLG5	9231	bcgsc.ca	37	10	79603449	79603449	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	215	10	170	1	9	9	0	0	0
SFTPD	6441	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	81702148	81702148	+	Silent	SNP	G	G	C	rs2077117	alternate_allele	TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	59	22	74	0	0	0	0	0	0
GRID1	2894	ucsc.edu	37	10	87966385	87966385	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	35	4	44	0	1	1	0	0	0
CYP26C1	340665	ucsc.edu	37	10	94821056	94821056	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	17	5	14	0	0	0	0	0	0
RBP4	5950	bcgsc.ca	37	10	95360178	95360178	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	143	9	161	0	0	0	0	0	0
ALDH18A1	5832	bcgsc.ca	37	10	97371149	97371149	+	Silent	SNP	G	G	T	rs189509801	alternate_allele	TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	304	14	322	2	54	54	0	0	0
SLIT1	6585	bcgsc.ca	37	10	98945279	98945279	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	25	10	53	0	0	0	0	0	0
SFRP5	6425	bcgsc.ca	37	10	99527409	99527409	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	116	8	88	0	0	0	0	0	0
ENTPD7	57089	ucsc.edu	37	10	101439200	101439200	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	39	4	41	0	3	3	0	0	0
CNNM2	54805	ucsc.edu	37	10	104679506	104679506	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	72	7	63	1	11	11	0	0	0
NT5C2	22978	bcgsc.ca	37	10	104866417	104866417	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	162	9	210	2	20	20	0	0	0
PDCD11	22984	ucsc.edu	37	10	105174049	105174049	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	46	5	75	1	1	1	0	0	0
CALHM2	51063	hgsc.bcm.edu;bcgsc.ca	37	10	105209181	105209181	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	111	8	110	0	8	8	0	0	0
ADD3	120	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	111878343	111878343	+	Splice_Site	SNP	A	A	G	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	82	35	102	0	0	0	0	0	0
PRLHR	2834	ucsc.edu	37	10	120354268	120354268	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	51	5	36	0	0	0	0	0	0
GLRX3	10539	bcgsc.ca	37	10	131973332	131973332	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	80	7	69	1	66	66	0	0	0
PHRF1	57661	ucsc.edu	37	11	609351	609351	+	Missense_Mutation	SNP	C	C	A	rs199922330	alternate_allele	TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	42	4	52	0	9	9	0	0	0
MUC5B	727897	ucsc.edu	37	11	1260675	1260675	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	47	5	60	0	0	0	0	0	0
TSSC4	10078	ucsc.edu	37	11	2424127	2424127	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	31	4	24	0	33	33	0	0	0
MMP26	56547	ucsc.edu	37	11	5010918	5010918	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	39	4	61	0	0	0	0	0	0
TRIM3	10612	ucsc.edu;bcgsc.ca	37	11	6478986	6478986	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	84	8	77	0	10	10	0	0	0
OVCH2	341277	ucsc.edu	37	11	7722923	7722923	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	39	4	44	0	0	0	0	0	0
DKK3	27122	bcgsc.ca	37	11	12020308	12020308	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	128	9	122	2	6	6	0	0	0
MICALCL	84953	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	12316190	12316190	+	Silent	SNP	C	C	T	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	181	65	238	0	0	0	0	0	0
INSC	387755	ucsc.edu	37	11	15197450	15197450	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	43	4	40	0	0	0	0	0	0
USH1C	10083	ucsc.edu	37	11	17539022	17539022	+	Splice_Site	SNP	C	C	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	12	4	25	0	0	0	0	0	0
CAT	847	bcgsc.ca	37	11	34492538	34492538	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	230	12	235	1	353	353	0	0	0
TTC17	55761	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	43418965	43418965	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	270	122	276	2	22	12	10	0	0
TSPAN18	90139	bcgsc.ca	37	11	44940772	44940772	+	Missense_Mutation	SNP	G	G	T	rs147332091	alternate_allele	TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	133	8	146	0	0	0	0	0	0
LRP4	4038	bcgsc.ca	37	11	46911576	46911576	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	129	9	124	0	1	1	0	0	0
ACP2	53	bcgsc.ca	37	11	47267307	47267307	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	98	7	101	0	65	65	0	0	0
OR4C6	219432	bcgsc.ca	37	11	55433371	55433371	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	176	9	166	0	0	0	0	0	0
OR5T3	390154	broad.mit.edu;bcgsc.ca	37	11	56019938	56019938	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	99	28	112	0	0	0	0	0	0
OR8U1	219417	broad.mit.edu;bcgsc.ca	37	11	56143937	56143937	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	280	10	317	0	0	0	0	0	0
TNKS1BP1	85456	bcgsc.ca	37	11	57077520	57077520	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	249	12	283	0	25	25	0	0	0
MS4A15	219995	ucsc.edu	37	11	60540955	60540955	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	43	5	47	0	0	0	0	0	0
ROM1	6094	ucsc.edu	37	11	62380943	62380943	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	18	4	31	0	3	3	0	0	0
LGALS12	85329	ucsc.edu	37	11	63283877	63283877	+	RNA	SNP	G	G	T	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	52	6	50	0	8	8	0	0	0
MALAT1	378938	ucsc.edu;bcgsc.ca	37	11	65267784	65267784	+	RNA	SNP	T	T	C	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	35	5	79	0	55	48	7	0	0
MALAT1	378938	ucsc.edu	37	11	65271366	65271366	+	RNA	SNP	C	C	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	48	5	33	0	16	16	0	0	0
SF3B2	10992	ucsc.edu	37	11	65829444	65829444	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	28	4	25	0	191	191	0	0	0
FOLR2	2350	ucsc.edu	37	11	71929776	71929776	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	20	4	16	0	0	0	0	0	0
PCF11	51585	bcgsc.ca	37	11	82879696	82879696	+	Silent	SNP	C	C	A	rs117248478	byfrequency;alternate_allele	TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	116	8	130	2	7	7	0	0	0
CHORDC1	26973	ucsc.edu	37	11	89956063	89956063	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	39	4	39	0	0	0	0	0	0
FAT3	120114	ucsc.edu	37	11	92564814	92564814	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	37	4	30	0	0	0	0	0	0
HTR3A	3359	ucsc.edu	37	11	113846091	113846091	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	48	5	59	1	0	0	0	0	0
TMPRSS4	56649	ucsc.edu	37	11	117985601	117985601	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	32	5	38	0	4	4	0	0	0
PHLDB1	23187	bcgsc.ca	37	11	118498256	118498256	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	150	8	167	0	21	21	0	0	0
C1QTNF5	114902	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	119210071	119210071	+	Silent	SNP	G	G	C	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	75	26	79	0	98	66	32	0	0
SORL1	6653	bcgsc.ca	37	11	121460057	121460057	+	Missense_Mutation	SNP	G	G	T	rs146194553	alternate_allele	TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	229	12	227	3	18	18	0	0	0
MIRLET7A2	406882	bcgsc.ca	37	11	122017261	122017261	+	RNA	SNP	C	C	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	146	9	163	0	0	0	0	0	0
OR8D1	283159	ucsc.edu	37	11	124180243	124180243	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	39	4	47	0	0	0	0	0	0
CDON	50937	ucsc.edu	37	11	125848279	125848279	+	Splice_Site	SNP	C	C	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	25	4	28	0	0	0	0	0	0
GLB1L2	89944	ucsc.edu	37	11	134215010	134215010	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	41	5	22	0	0	0	0	0	0
KDM5A	5927	bcgsc.ca	37	12	417152	417152	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	144	8	147	0	7	7	0	0	0
LRP6	4040	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	12302076	12302076	+	Silent	SNP	C	C	T	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	262	115	282	0	1	0	1	0	0
PLEKHA5	54477	ucsc.edu	37	12	19512456	19512456	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	43	4	52	0	20	20	0	0	0
COL2A1	1280	ucsc.edu	37	12	48377924	48377924	+	Splice_Site	SNP	C	C	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	39	4	38	0	0	0	0	0	0
ASB8	140461	bcgsc.ca	37	12	48543448	48543448	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	99	8	93	1	32	32	0	0	0
C12orf54	121273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	48888593	48888593	+	Silent	SNP	T	T	C	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	183	75	186	0	0	0	0	0	0
MLL2	8085	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	49437679	49437679	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	119	38	147	0	0	0	0	0	0
TFCP2	7024	bcgsc.ca	37	12	51566124	51566124	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	177	10	190	2	16	16	0	0	0
KRT3	3850	ucsc.edu	37	12	53186947	53186947	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	35	4	27	0	0	0	0	0	0
HNRNPA1	3178	ucsc.edu	37	12	54675614	54675614	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	44	4	53	0	745	743	0	0	2
GPR84	53831	ucsc.edu	37	12	54757355	54757355	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	38	4	34	0	2	2	0	0	0
ITGA5	3678	ucsc.edu	37	12	54803346	54803346	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	41	4	54	0	13	13	0	0	0
NACA	4666	ucsc.edu	37	12	57113510	57113510	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	42	5	63	0	2	2	0	0	0
NACA	4666	ucsc.edu	37	12	57115106	57115106	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	54	6	46	0	0	0	0	0	0
STAT6	6778	ucsc.edu	37	12	57493588	57493588	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	30	4	39	0	139	139	0	0	0
CNOT2	4848	broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	70704758	70704758	+	Silent	SNP	C	C	T	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	80	20	87	0	19	9	10	0	0
MYBPC1	4604	ucsc.edu	37	12	102023271	102023271	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	64	7	75	2	0	0	0	0	0
STAB2	55576	bcgsc.ca	37	12	103988211	103988211	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	220	14	214	3	0	0	0	0	0
PWP1	11137	bcgsc.ca	37	12	108091332	108091332	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	86	6	109	0	19	19	0	0	0
SH2B3	10019	ucsc.edu	37	12	111886058	111886058	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	38	4	33	0	14	14	0	0	0
ACAD10	80724	ucsc.edu;bcgsc.ca	37	12	112194237	112194237	+	Missense_Mutation	SNP	G	G	T	rs75289932	byfrequency;alternate_allele	TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	51	6	68	0	101	101	0	0	0
OAS3	4940	ucsc.edu	37	12	113402187	113402187	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	22	4	21	0	7	7	0	0	0
NOS1	4842	bcgsc.ca	37	12	117701740	117701740	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	230	10	266	1	0	0	0	0	0
ANAPC5	51433	ucsc.edu	37	12	121766226	121766226	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	41	4	58	0	117	117	0	0	0
HPD	3242	bcgsc.ca	37	12	122277683	122277683	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	118	7	146	0	1	1	0	0	0
WDR66	144406	bcgsc.ca	37	12	122396317	122396317	+	Missense_Mutation	SNP	G	G	T	rs79320015	alternate_allele	TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	308	12	281	4	1	1	0	0	0
NCOR2	9612	ucsc.edu	37	12	124810116	124810116	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	17	4	12	0	30	30	0	0	0
NCOR2	9612	ucsc.edu	37	12	124914209	124914209	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	24	4	17	0	23	23	0	0	0
RIMBP2	23504	bcgsc.ca	37	12	130929757	130929757	+	Silent	SNP	C	C	A	rs77391015	byfrequency;alternate_allele	TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	189	10	193	1	1	1	0	0	0
MTUS2	23281	bcgsc.ca	37	13	29855998	29855998	+	Silent	SNP	C	C	A	rs2989382	byfrequency;alternate_allele	TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	126	9	113	1	0	0	0	0	0
EPSTI1	94240	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	13	43462629	43462629	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	149	57	156	2	1	1	0	0	0
KCTD4	386618	broad.mit.edu	37	13	45768267	45768269	+	In_Frame_Del	DEL	TTA	TTA	-	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	TTA	TTA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	154	15	167	0	0	0	0	0	0
LRCH1	23143	bcgsc.ca	37	13	47315858	47315858	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	508	17	491	4	0	0	0	0	0
GPR183	1880	bcgsc.ca	37	13	99947322	99947322	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	85	7	110	0	5	5	0	0	0
ANKRD10	55608	bcgsc.ca	37	13	111545480	111545480	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	118	8	138	1	26	26	0	0	0
POTEG	404785	broad.mit.edu;bcgsc.ca	37	14	19553567	19553567	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	1334	50	1420	1	0	0	0	0	0
TEP1	7011	ucsc.edu	37	14	20853155	20853155	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	34	4	50	0	0	0	0	0	0
ARHGEF40	55701	ucsc.edu	37	14	21547156	21547156	+	Missense_Mutation	SNP	G	G	T	rs143586197	alternate_allele	TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	52	5	58	1	22	22	0	0	0
NEDD8	4738	ucsc.edu	37	14	24686353	24686353	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	37	4	53	0	334	334	0	0	0
MIR548AI	100616347	bcgsc.ca	37	14	30103557	30103557	+	RNA	SNP	G	G	T	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	129	8	151	0	0	0	0	0	0
NUBPL	80224	ucsc.edu	37	14	32031358	32031358	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	33	4	58	0	7	7	0	0	0
NFKBIA	4792	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	35872504	35872504	+	Silent	SNP	A	A	G	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	139	7	151	1	137	121	16	0	0
KLHDC1	122773	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	50196254	50196254	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	61	24	80	0	0	0	0	0	0
PYGL	5836	bcgsc.ca	37	14	51390767	51390767	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	152	9	146	2	11	11	0	0	0
SYNE2	23224	bcgsc.ca	37	14	64593131	64593131	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	79	7	75	0	14	14	0	0	0
PLEKHG3	26030	bcgsc.ca	37	14	65208369	65208369	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	112	8	117	2	27	27	0	0	0
PCNX	22990	ucsc.edu;bcgsc.ca	37	14	71413684	71413684	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	47	5	68	0	3	3	0	0	0
CCDC176	80127	bcgsc.ca	37	14	74531390	74531390	+	Splice_Site	SNP	G	G	T	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	119	8	134	1	0	0	0	0	0
PROX2	283571	ucsc.edu	37	14	75330070	75330070	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	40	5	43	0	0	0	0	0	0
DLST	1743	bcgsc.ca	37	14	75367772	75367772	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	105	7	100	1	0	0	0	0	0
GSTZ1	2954	ucsc.edu	37	14	77793880	77793880	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	28	4	32	0	22	22	0	0	0
SPATA7	55812	ucsc.edu	37	14	88857761	88857761	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	51	5	64	0	9	9	0	0	0
KCNK13	56659	bcgsc.ca	37	14	90651019	90651019	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	134	8	142	2	4	4	0	0	0
CCDC88C	440193	ucsc.edu	37	14	91780485	91780485	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	32	4	20	0	0	0	0	0	0
MOAP1	64112	bcgsc.ca	37	14	93650449	93650449	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	213	11	209	3	48	48	0	0	0
UNC79	57578	bcgsc.ca	37	14	94008922	94008922	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	154	9	153	0	0	0	0	0	0
FAM181A	90050	ucsc.edu	37	14	94394721	94394721	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	36	4	39	0	0	0	0	0	0
BRF1	2972	ucsc.edu	37	14	105752698	105752698	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	39	4	26	0	6	6	0	0	0
PACS2	23241	ucsc.edu	37	14	105843143	105843143	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	43	4	47	0	25	25	0	0	0
ATP10A	57194	broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	25959142	25959142	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	50	14	63	1	0	0	0	0	0
GABRG3	2567	broad.mit.edu	37	15	27777965	27777965	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	60	3	65	0	0	0	0	0	0
HERC2	8924	bcgsc.ca	37	15	28421672	28421672	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	137	9	172	1	17	17	0	0	0
RYR3	6263	ucsc.edu	37	15	33795867	33795867	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	40	4	40	0	0	0	0	0	0
RYR3	6263	ucsc.edu	37	15	34102698	34102698	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	37	4	50	0	0	0	0	0	0
MAPKBP1	23005	ucsc.edu	37	15	42109815	42109815	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	51	5	52	0	0	0	0	0	0
SPTBN5	51332	ucsc.edu	37	15	42152903	42152903	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	24	4	22	0	0	0	0	0	0
PLA2G4F	255189	broad.mit.edu	37	15	42444915	42444915	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	6	2	4	0	0	0	0	0	0
TGM7	116179	ucsc.edu	37	15	43574239	43574239	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	37	4	36	0	0	0	0	0	0
RNU6-28	100873756	bcgsc.ca	37	15	43769756	43769756	+	RNA	SNP	G	G	T	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	138	8	151	0	0	0	0	0	0
DUOX1	53905	bcgsc.ca	37	15	45456989	45456989	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	263	14	290	5	0	0	0	0	0
FBN1	2200	ucsc.edu	37	15	48756163	48756163	+	Silent	SNP	G	G	T	rs141925790	alternate_allele	TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	41	4	70	1	1	1	0	0	0
SHC4	399694	bcgsc.ca	37	15	49255030	49255030	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	81	7	86	1	0	0	0	0	0
DMXL2	23312	bcgsc.ca	37	15	51750978	51750978	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	99	7	98	1	4	4	0	0	0
RAB27A	5873	bcgsc.ca	37	15	55520812	55520812	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	130	9	123	1	0	0	0	0	0
DYX1C1	161582	bcgsc.ca	37	15	55789914	55789914	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	236	11	224	2	0	0	0	0	0
TCF12	6938	bcgsc.ca	37	15	57355978	57355978	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	330	14	352	4	14	14	0	0	0
SMAD6	4091	hgsc.bcm.edu	37	15	67008822	67008822	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	179	9	174	2	0	0	0	0	0
GLCE	26035	bcgsc.ca	37	15	69548655	69548655	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	240	11	271	2	3	3	0	0	0
THSD4	79875	ucsc.edu	37	15	72023482	72023482	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	47	5	60	0	0	0	0	0	0
PSTPIP1	9051	ucsc.edu	37	15	77329441	77329441	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	54	6	52	0	2	2	0	0	0
RASGRF1	5923	ucsc.edu	37	15	79323830	79323830	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	29	5	38	0	0	0	0	0	0
MESDC2	23184	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	15	81282037	81282037	+	Silent	SNP	G	G	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	68	33	64	0	22	10	12	0	0
WDR93	56964	bcgsc.ca	37	15	90281300	90281300	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	470	18	497	6	0	0	0	0	0
ANPEP	290	bcgsc.ca	37	15	90349638	90349638	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	274	11	235	2	563	563	0	0	0
IDH2	3418	ucsc.edu	37	15	90627551	90627551	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	33	4	32	0	370	370	0	0	0
SYNM	23336	ucsc.edu	37	15	99653920	99653920	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	20	4	24	0	0	0	0	0	0
LRRK1	79705	bcgsc.ca	37	15	101567475	101567475	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	79	8	78	1	0	0	0	0	0
ITFG3	83986	bcgsc.ca	37	16	304624	304624	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	371	16	355	5	90	90	0	0	0
CACNA1H	8912	bcgsc.ca	37	16	1270450	1270450	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	53	8	72	0	13	13	0	0	0
BAIAP3	8938	ucsc.edu	37	16	1397331	1397331	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	38	4	39	0	1	1	0	0	0
CRAMP1L	57585	ucsc.edu	37	16	1706230	1706230	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	28	4	38	0	2	2	0	0	0
ECI1	1632	ucsc.edu	37	16	2296959	2296959	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	41	4	50	0	196	196	0	0	0
MEFV	4210	bcgsc.ca	37	16	3306534	3306534	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	211	11	212	2	0	0	0	0	0
MGRN1	23295	ucsc.edu	37	16	4730038	4730038	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	28	5	27	0	0	0	0	0	0
DCUN1D3	123879	bcgsc.ca	37	16	20871467	20871467	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	211	11	239	4	2	2	0	0	0
RRN3P3	100131998	broad.mit.edu	37	16	22441236	22441236	+	RNA	SNP	G	G	A	rs71387644		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	80	7	79	1	34	2	32	0	0
KDM8	79831	ucsc.edu	37	16	27221910	27221910	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	38	4	35	0	5	5	0	0	0
PAGR1	79447	ucsc.edu	37	16	29828610	29828610	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	30	4	32	0	0	0	0	0	0
PAGR1	79447	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	29830999	29830999	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	113	23	147	1	41	31	10	0	0
ITGAL	3683	bcgsc.ca	37	16	30507522	30507522	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	207	11	215	1	2	2	0	0	0
ITGAL	3683	ucsc.edu	37	16	30516601	30516601	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	36	4	54	0	2	2	0	0	0
C16orf93	90835	bcgsc.ca	37	16	30768824	30768824	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	349	12	340	3	1	1	0	0	0
ITGAD	3681	bcgsc.ca	37	16	31422760	31422760	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	250	13	265	1	1	1	0	0	0
ABCC12	94160	broad.mit.edu	37	16	48180262	48180262	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	148	5	141	0	0	0	0	0	0
ZNF423	23090	broad.mit.edu;ucsc.edu	37	16	49670868	49670868	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	49	6	63	0	3	3	0	0	0
CES1P1	51716	ucsc.edu	37	16	55794587	55794587	+	RNA	SNP	G	G	T	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	44	9	33	5	1	1	0	0	0
TRADD	8717	ucsc.edu	37	16	67188623	67188623	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	28	4	35	0	29	29	0	0	0
TSNAXIP1	55815	bcgsc.ca	37	16	67859687	67859687	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	163	11	153	2	1	1	0	0	0
CENPT	80152	ucsc.edu	37	16	67865660	67865660	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	43	5	41	0	0	0	0	0	0
DPEP3	64180	ucsc.edu	37	16	68009732	68009732	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	37	4	34	0	0	0	0	0	0
MAF	4094	hgsc.bcm.edu	37	16	79633040	79633040	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	6	4	2	0	81	45	36	0	0
C16orf46	123775	bcgsc.ca	37	16	81094965	81094965	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	104	7	129	1	2	2	0	0	0
ADAD2	161931	ucsc.edu	37	16	84228055	84228055	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	22	4	25	0	0	0	0	0	0
CDT1	81620	ucsc.edu	37	16	88874555	88874555	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	35	4	39	0	9	9	0	0	0
TRAPPC2L	51693	bcgsc.ca	37	16	88925054	88925054	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	212	12	177	4	98	98	0	0	0
SCARF1	8578	bcgsc.ca	37	17	1538055	1538055	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	251	12	277	3	9	9	0	0	0
TRPV1	7442	ucsc.edu	37	17	3480982	3480982	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	12	4	15	0	3	3	0	0	0
ATP2A3	489	bcgsc.ca	37	17	3839653	3839653	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	120	8	133	0	13	13	0	0	0
ACADVL	37	bcgsc.ca	37	17	7124138	7124138	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	97	8	128	2	1	1	0	0	0
ALOXE3	59344	ucsc.edu	37	17	8007510	8007510	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	64	6	60	0	0	0	0	0	0
CTC1	80169	ucsc.edu	37	17	8146377	8146377	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	43	5	56	0	6	6	0	0	0
DNAH9	1770	bcgsc.ca	37	17	11835353	11835353	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	437	14	443	5	0	0	0	0	0
PEMT	10400	ucsc.edu	37	17	17425685	17425685	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	37	4	34	0	29	29	0	0	0
RAI1	10743	bcgsc.ca	37	17	17697304	17697304	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	137	8	170	0	5	5	0	0	0
TOM1L2	146691	ucsc.edu	37	17	17769716	17769716	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	17	4	15	0	11	11	0	0	0
FAM83G	644815	bcgsc.ca	37	17	18882965	18882965	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	185	9	164	0	1	1	0	0	0
KSR1	8844	ucsc.edu	37	17	25932702	25932702	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	34	4	42	0	3	3	0	0	0
FOXN1	8456	ucsc.edu	37	17	26854268	26854268	+	Splice_Site	SNP	G	G	T	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	27	4	29	0	0	0	0	0	0
LOC100505782	0	ucsc.edu	37	17	39564933	39564933	+	RNA	SNP	C	C	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	32	4	28	0	0	0	0	0	0
NT5C3B	115024	bcgsc.ca	37	17	39981896	39981896	+	Missense_Mutation	SNP	C	C	A	rs149392224	byfrequency;alternate_allele	TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	218	10	267	3	38	38	0	0	0
ACLY	47	ucsc.edu	37	17	40055027	40055027	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	27	4	44	0	0	0	0	0	0
STAT3	6774	ucsc.edu	37	17	40481786	40481786	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	43	4	71	0	0	0	0	0	0
MLX	6945	bcgsc.ca	37	17	40723572	40723572	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	328	18	323	4	0	0	0	0	0
CNTNAP1	8506	bcgsc.ca	37	17	40844556	40844556	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	166	10	153	1	6	6	0	0	0
WNK4	65266	ucsc.edu	37	17	40939371	40939371	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	42	5	72	0	0	0	0	0	0
MPP3	4356	ucsc.edu	37	17	41898251	41898251	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	32	4	36	0	2	2	0	0	0
CD300LG	146894	ucsc.edu	37	17	41939231	41939231	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	42	5	54	0	0	0	0	0	0
GPATCH8	23131	bcgsc.ca	37	17	42476316	42476316	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	87	8	88	0	14	14	0	0	0
GFAP	2670	bcgsc.ca	37	17	42985442	42985442	+	Missense_Mutation	SNP	C	C	A	rs201270155	alternate_allele	TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	244	9	218	2	0	0	0	0	0
GFAP	2670	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	17	42987523	42987523	+	Missense_Mutation	SNP	G	G	C	rs9908084	byfrequency;alternate_allele	TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	149	48	158	1	0	0	0	0	0
NFE2L1	4779	ucsc.edu	37	17	46136803	46136803	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	53	6	63	1	273	273	0	0	0
HSF5	124535	broad.mit.edu;bcgsc.ca	37	17	56565509	56565509	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	35	18	38	0	0	0	0	0	0
ACE	1636	ucsc.edu	37	17	61562733	61562733	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	29	4	29	0	1	1	0	0	0
ACE	1636	ucsc.edu	37	17	61571803	61571803	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	37	4	61	0	9	9	0	0	0
DNAI2	64446	bcgsc.ca	37	17	72281209	72281209	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	126	11	100	2	0	0	0	0	0
GPR142	350383	broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	72368139	72368139	+	Silent	SNP	C	C	A	rs143074832	byfrequency;alternate_allele	TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	51	9	45	0	0	0	0	0	0
GRIN2C	2905	ucsc.edu	37	17	72838642	72838642	+	Missense_Mutation	SNP	G	G	T	rs149835650	alternate_allele	TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	34	4	28	0	0	0	0	0	0
RNF157	114804	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	74158077	74158077	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	67	31	89	0	0	0	0	0	0
TMC6	11322	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	76115385	76115385	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	100	31	130	0	0	0	0	0	0
ENPP7	339221	ucsc.edu	37	17	77709030	77709030	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	38	4	42	0	0	0	0	0	0
CARD14	79092	ucsc.edu	37	17	78169447	78169447	+	Silent	SNP	G	G	T	rs138100360	alternate_allele	TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	29	4	16	0	0	0	0	0	0
AATK	9625	bcgsc.ca	37	17	79098537	79098537	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	76	6	76	0	0	0	0	0	0
FASN	2194	ucsc.edu	37	17	80046688	80046688	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	35	4	58	1	8	8	0	0	0
CCDC57	284001	bcgsc.ca	37	17	80130670	80130670	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	41	5	32	0	6	6	0	0	0
TTC39C	125488	ucsc.edu	37	18	21703898	21703898	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	18	4	27	0	0	0	0	0	0
SMAD2	4087	bcgsc.ca	37	18	45377693	45377693	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	160	9	164	0	0	0	0	0	0
POLI	11201	bcgsc.ca	37	18	51807103	51807103	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	294	12	351	5	4	4	0	0	0
WDR7	23335	bcgsc.ca	37	18	54424320	54424320	+	Silent	SNP	C	C	A	rs138443774	byfrequency;alternate_allele	TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	190	9	259	4	4	4	0	0	0
CNDP2	55748	ucsc.edu	37	18	72176087	72176087	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	44	4	54	0	0	0	0	0	0
ABCA7	10347	ucsc.edu	37	19	1047218	1047218	+	Silent	SNP	G	G	T	rs200714491	alternate_allele	TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	26	4	30	0	3	3	0	0	0
HMHA1	23526	ucsc.edu	37	19	1080533	1080533	+	Silent	SNP	C	C	A	rs140570939	alternate_allele	TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	75	7	52	1	0	0	0	0	0
CATSPERD	257062	bcgsc.ca	37	19	5768200	5768200	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	86	7	88	0	0	0	0	0	0
MYO1F	4542	ucsc.edu	37	19	8587584	8587584	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	43	4	54	1	13	13	0	0	0
MYO1F	4542	bcgsc.ca	37	19	8615517	8615517	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	93	8	112	1	3	3	0	0	0
ZNF266	10781	bcgsc.ca	37	19	9525013	9525013	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	80	7	90	0	5	5	0	0	0
ZNF653	115950	ucsc.edu	37	19	11597672	11597672	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	22	4	15	0	15	15	0	0	0
STX10	8677	ucsc.edu	37	19	13256185	13256185	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	59	7	56	0	67	67	0	0	0
AKAP8L	26993	ucsc.edu	37	19	15508332	15508332	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	34	4	47	0	1	1	0	0	0
SLC27A1	376497	ucsc.edu	37	19	17597499	17597499	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	31	4	31	0	27	27	0	0	0
UNC13A	23025	ucsc.edu	37	19	17759781	17759781	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	20	4	15	0	0	0	0	0	0
IL12RB1	3594	ucsc.edu	37	19	18183068	18183068	+	Missense_Mutation	SNP	G	G	T	rs149896994	alternate_allele	TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	38	5	40	0	3	3	0	0	0
PDE4C	5143	ucsc.edu	37	19	18332980	18332980	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	41	5	49	0	1	1	0	0	0
CILP2	148113	ucsc.edu	37	19	19656328	19656328	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	33	4	26	0	0	0	0	0	0
LGI4	163175	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	35617832	35617832	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	334	26	87	0	4	4	0	0	0
WDR62	284403	ucsc.edu	37	19	36594478	36594478	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	22	4	59	0	1	1	0	0	0
MAP4K1	11184	bcgsc.ca	37	19	39086628	39086628	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	116	7	203	2	0	0	0	0	0
PLEKHG2	64857	ucsc.edu	37	19	39912918	39912918	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	14	4	26	0	0	0	0	0	0
C19orf54	284325	ucsc.edu	37	19	41249984	41249984	+	Missense_Mutation	SNP	G	G	T	rs112664988		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	30	4	49	0	0	0	0	0	0
SNRPA	6626	ucsc.edu;bcgsc.ca	37	19	41263251	41263251	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	37	6	72	0	27	27	0	0	0
EGLN2	112398	ucsc.edu	37	19	41312519	41312519	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	52	5	117	1	11	11	0	0	0
B3GNT8	374907	ucsc.edu	37	19	41932595	41932595	+	Missense_Mutation	SNP	C	C	A	rs202077048		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	29	4	47	0	0	0	0	0	0
ERF	2077	ucsc.edu	37	19	42753355	42753355	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	31	4	48	0	38	38	0	0	0
DMWD	1762	ucsc.edu	37	19	46289911	46289911	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	37	4	44	0	15	15	0	0	0
FUT2	2524	ucsc.edu	37	19	49207182	49207182	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	41	4	77	1	1	1	0	0	0
PLEKHA4	57664	ucsc.edu	37	19	49360707	49360707	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	24	4	53	0	26	26	0	0	0
KLK14	43847	ucsc.edu	37	19	51582802	51582802	+	Missense_Mutation	SNP	C	C	A	rs199715229	alternate_allele	TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	23	4	38	0	0	0	0	0	0
MBOAT7	79143	ucsc.edu	37	19	54692117	54692117	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	52	5	65	0	33	33	0	0	0
LILRA4	23547	ucsc.edu	37	19	54848915	54848915	+	Silent	SNP	G	G	T	rs141046735	alternate_allele	TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	36	4	57	0	1	1	0	0	0
LILRA2	11027	ucsc.edu	37	19	55087361	55087361	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	35	4	53	1	10	10	0	0	0
NLRP7	199713	ucsc.edu	37	19	55453037	55453037	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	44	5	64	1	0	0	0	0	0
ZNF71	58491	ucsc.edu	37	19	57133475	57133475	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	39	5	87	0	1	1	0	0	0
ZNF805	390980	ucsc.edu	37	19	57765763	57765763	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	38	4	68	1	1	1	0	0	0
ZNF548	147694	ucsc.edu	37	19	57911026	57911026	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	40	4	80	0	7	7	0	0	0
ZNF211	10520	bcgsc.ca	37	19	58152257	58152257	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	48	6	83	0	2	2	0	0	0
ZNF256	10172	bcgsc.ca	37	19	58454001	58454001	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	79	7	155	1	1	1	0	0	0
ROCK2	9475	bcgsc.ca	37	2	11375899	11375899	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	163	13	178	2	6	6	0	0	0
NCOA1	8648	bcgsc.ca	37	2	24985567	24985567	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	314	14	361	2	0	0	0	0	0
FAM179A	165186	ucsc.edu	37	2	29222146	29222146	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	29	5	29	0	0	0	0	0	0
HEATR5B	54497	ucsc.edu	37	2	37247816	37247816	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	55	6	85	1	10	10	0	0	0
CYP1B1	1545	hgsc.bcm.edu;broad.mit.edu	37	2	38302357	38302357	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	12	6	18	0	10	5	5	0	0
THADA	63892	ucsc.edu	37	2	43458362	43458362	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	37	4	61	0	15	15	0	0	0
STON1-GTF2A1L	286749	ucsc.edu	37	2	48869596	48869596	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	49	5	53	0	0	0	0	0	0
SPTBN1	6711	bcgsc.ca	37	2	54753685	54753685	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	92	9	94	1	38	38	0	0	0
ETAA1	54465	bcgsc.ca	37	2	67631648	67631648	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	229	11	202	2	8	8	0	0	0
PCBP1	5093	ucsc.edu	37	2	70315543	70315543	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	34	4	34	0	445	445	0	0	0
DYSF	8291	bcgsc.ca	37	2	71896870	71896870	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	123	8	129	0	0	0	0	0	0
PRADC1	84279	ucsc.edu	37	2	73455924	73455924	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	43	4	40	0	2	2	0	0	0
TET3	200424	ucsc.edu	37	2	74328200	74328200	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	29	5	20	0	2	2	0	0	0
BOLA3	388962	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	2	74362686	74362686	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	105	33	131	1	32	16	16	0	0
KCNIP3	30818	bcgsc.ca	37	2	96040933	96040933	+	Missense_Mutation	SNP	G	G	T	rs144496841	byfrequency;alternate_allele	TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	131	9	127	0	18	18	0	0	0
NCAPH	23397	bcgsc.ca	37	2	97009946	97009946	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	129	7	124	0	1	1	0	0	0
FER1L5	90342	bcgsc.ca	37	2	97370322	97370322	+	Missense_Mutation	SNP	C	C	A	rs200360125		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	200	11	206	2	0	0	0	0	0
ACTR1B	10120	bcgsc.ca	37	2	98275421	98275421	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	191	11	182	0	77	77	0	0	0
GCC2	9648	ucsc.edu	37	2	109100751	109100751	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	24	4	42	0	27	27	0	0	0
BCL2L11	10018	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	111921708	111921716	+	Frame_Shift_Del	DEL	AGGTATTTT	AGGTATTTT	-	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	AGGTATTTT	AGGTATTTT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	58	13	97	0	0	0	0	0	0
ZC3H6	376940	ucsc.edu	37	2	113082551	113082551	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	26	4	11	0	0	0	0	0	0
CLASP1	23332	ucsc.edu	37	2	122122690	122122690	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	31	4	51	0	5	5	0	0	0
WDR33	55339	hgsc.bcm.edu	37	2	128474756	128474756	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	30	11	29	0	23	9	14	0	0
WDR33	55339	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	128526506	128526506	+	Splice_Site	SNP	C	C	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	126	48	142	0	0	0	0	0	0
FMNL2	114793	ucsc.edu	37	2	153417435	153417435	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	31	4	35	0	17	17	0	0	0
TTC21B	79809	ucsc.edu	37	2	166781107	166781107	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	56	6	58	0	1	1	0	0	0
RBM45	129831	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	178977555	178977555	+	Silent	SNP	C	C	T	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	55	7	88	0	5	2	3	0	0
TTN	7273	bcgsc.ca	37	2	179596473	179596473	+	Missense_Mutation	SNP	C	C	A	rs200018866	alternate_allele	TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	168	10	169	2	0	0	0	0	0
CCDC108	255101	ucsc.edu	37	2	219892563	219892563	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	36	4	29	0	0	0	0	0	0
OBSL1	23363	ucsc.edu	37	2	220422726	220422726	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	31	4	27	0	31	31	0	0	0
COL4A3	1285	ucsc.edu	37	2	228104922	228104922	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	24	4	26	0	9	9	0	0	0
TRIP12	9320	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	230701700	230701702	+	Frame_Shift_Del	DEL	ACT	ACT	-	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	ACT	ACT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	47	23	54	0	0	0	0	0	0
SH3BP4	23677	bcgsc.ca	37	2	235951148	235951148	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	85	7	101	0	21	21	0	0	0
HAO1	54363	bcgsc.ca	37	20	7894857	7894857	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	93	7	106	1	0	0	0	0	0
PLAGL2	5326	ucsc.edu	37	20	30784402	30784402	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	38	5	28	0	3	3	0	0	0
CDK5RAP1	51654	bcgsc.ca	37	20	31958354	31958354	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	237	11	235	0	20	20	0	0	0
DLGAP4	22839	ucsc.edu	37	20	35127658	35127658	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	44	5	44	0	0	0	0	0	0
SOGA1	140710	ucsc.edu	37	20	35457544	35457544	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	17	4	10	0	1	1	0	0	0
ZNF335	63925	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	44579218	44579218	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	229	25	256	0	5	5	0	0	0
CSE1L	1434	ucsc.edu	37	20	47682811	47682811	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	49	5	54	1	19	19	0	0	0
ZFP64	55734	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	50701575	50701575	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	145	37	134	1	4	1	3	0	0
ZBTB46	140685	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	62421455	62421455	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	59	23	84	0	4	3	1	0	0
ADAMTS5	11096	ucsc.edu	37	21	28338163	28338163	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	30	4	26	0	0	0	0	0	0
KRTAP27-1	643812	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	21	31709825	31709825	+	Silent	SNP	G	G	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	145	50	150	0	0	0	0	0	0
TIAM1	7074	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	21	32638551	32638551	+	Silent	SNP	G	G	A	rs202182190		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	147	48	157	0	0	0	0	0	0
SON	6651	bcgsc.ca	37	21	34923025	34923025	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	150	8	134	3	24	24	0	0	0
KCNE1	3753	ucsc.edu;bcgsc.ca	37	21	35821909	35821909	+	Silent	SNP	C	C	A	rs144094344	alternate_allele	TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	61	10	66	0	0	0	0	0	0
C2CD2	25966	ucsc.edu	37	21	43309259	43309259	+	Missense_Mutation	SNP	C	C	A	rs199638205	alternate_allele	TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	35	4	39	0	7	7	0	0	0
SIK1	150094	ucsc.edu	37	21	44840124	44840124	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	44	4	46	0	0	0	0	0	0
AGPAT3	56894	ucsc.edu	37	21	45397935	45397935	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	31	4	54	0	0	0	0	0	0
PTTG1IP	754	ucsc.edu	37	21	46276239	46276239	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	53	6	48	0	242	241	0	1	0
ADARB1	104	bcgsc.ca	37	21	46604883	46604883	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	174	8	153	0	2	2	0	0	0
COL18A1	80781	ucsc.edu;bcgsc.ca	37	21	46898249	46898249	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	63	7	77	0	0	0	0	0	0
COL6A2	1292	ucsc.edu;bcgsc.ca	37	21	47538581	47538581	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	35	6	35	0	0	0	0	0	0
CCT8L2	150160	ucsc.edu;bcgsc.ca	37	22	17072915	17072915	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	62	7	90	0	0	0	0	0	0
XKR3	150165	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	17280836	17280836	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	123	54	152	2	0	0	0	0	0
CECR2	27443	ucsc.edu	37	22	18003267	18003267	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	24	4	17	0	1	1	0	0	0
AIFM3	150209	ucsc.edu	37	22	21335280	21335280	+	Splice_Site	SNP	G	G	T	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	34	4	58	1	0	0	0	0	0
SMARCB1	6598	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	22	24145544	24145544	+	Missense_Mutation	SNP	C	C	T	rs137986695		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	114	10	127	0	147	142	5	0	0
ASCC2	84164	ucsc.edu	37	22	30198153	30198153	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	50	5	77	1	29	29	0	0	0
DRG1	4733	hgsc.bcm.edu;broad.mit.edu	37	22	31799189	31799189	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	52	3	60	0	0	0	0	0	0
SFI1	9814	ucsc.edu	37	22	32003939	32003939	+	Missense_Mutation	SNP	G	G	T	rs201357213	byfrequency;alternate_allele	TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	51	5	54	0	2	2	0	0	0
C1QTNF6	114904	broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	37578392	37578392	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	42	10	25	0	11	7	4	0	0
SOX10	6663	bcgsc.ca	37	22	38370169	38370169	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	176	10	212	3	0	0	0	0	0
PICK1	9463	bcgsc.ca	37	22	38467750	38467750	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	79	8	67	0	0	0	0	0	0
MKL1	57591	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	22	40816560	40816562	+	In_Frame_Del	DEL	CCC	CCC	-	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	CCC	CCC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	97	39	139	0	0	0	0	0	0
PARVG	64098	ucsc.edu	37	22	44581731	44581731	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	29	4	31	0	4	4	0	0	0
RIBC2	26150	ucsc.edu	37	22	45826805	45826805	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	29	4	21	0	0	0	0	0	0
PLXNB2	23654	ucsc.edu	37	22	50716686	50716686	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	46	5	40	0	1	1	0	0	0
SETD5	55209	ucsc.edu;bcgsc.ca	37	3	9517352	9517352	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	52	7	55	0	11	11	0	0	0
FANCD2	2177	bcgsc.ca	37	3	10084323	10084323	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	179	10	201	1	1	1	0	0	0
NR2C2	7182	bcgsc.ca	37	3	15073949	15073949	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	163	9	190	2	4	4	0	0	0
ARPP21	10777	ucsc.edu	37	3	35770996	35770996	+	Missense_Mutation	SNP	C	C	A	rs200486245	alternate_allele	TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	44	4	75	0	0	0	0	0	0
SLC22A13	9390	ucsc.edu	37	3	38316964	38316964	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	52	5	54	0	10	10	0	0	0
SCN5A	6331	ucsc.edu	37	3	38627528	38627528	+	Missense_Mutation	SNP	C	C	A	rs199473584	alternate_allele	TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	23	4	27	0	0	0	0	0	0
SCN11A	11280	ucsc.edu	37	3	38913197	38913197	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	35	5	37	0	0	0	0	0	0
MYRIP	25924	ucsc.edu	37	3	40231920	40231920	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	54	5	63	0	3	3	0	0	0
TRAK1	22906	ucsc.edu	37	3	42264623	42264623	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	32	4	38	0	25	25	0	0	0
PTPN23	25930	bcgsc.ca	37	3	47450484	47450484	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	125	9	123	2	12	12	0	0	0
COL7A1	1294	ucsc.edu	37	3	48618341	48618341	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	42	4	43	0	0	0	0	0	0
BSN	8927	ucsc.edu	37	3	49662559	49662559	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	36	4	42	0	0	0	0	0	0
SLC38A3	10991	ucsc.edu	37	3	50254704	50254704	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	42	4	35	0	0	0	0	0	0
C3orf18	51161	ucsc.edu	37	3	50603088	50603088	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	41	4	66	0	3	3	0	0	0
NISCH	11188	bcgsc.ca	37	3	52524848	52524848	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	152	11	167	1	2	2	0	0	0
TKT	7086	ucsc.edu	37	3	53259873	53259873	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	40	4	54	0	302	302	0	0	0
CACNA1D	776	bcgsc.ca	37	3	53835097	53835097	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	133	9	161	0	0	0	0	0	0
PRICKLE2	166336	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	64084893	64084893	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	84	39	82	0	1	0	1	0	0
PRICKLE2	166336	ucsc.edu	37	3	64085032	64085032	+	Missense_Mutation	SNP	G	G	T	rs137975846		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	43	4	61	0	0	0	0	0	0
FAM86DP	692099	ucsc.edu	37	3	75471245	75471245	+	RNA	SNP	G	G	T	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	44	4	68	0	20	20	0	0	0
BBX	56987	bcgsc.ca	37	3	107435613	107435613	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	193	10	195	1	11	11	0	0	0
ARHGAP31	57514	ucsc.edu	37	3	119134628	119134628	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	42	5	60	1	6	6	0	0	0
STXBP5L	9515	ucsc.edu	37	3	120628603	120628603	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	40	5	55	0	0	0	0	0	0
FBXO40	51725	bcgsc.ca	37	3	121345660	121345660	+	Missense_Mutation	SNP	C	C	A	rs147521206	byfrequency;alternate_allele	TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	129	8	138	2	0	0	0	0	0
PLXND1	23129	ucsc.edu	37	3	129294646	129294646	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	34	4	31	0	11	11	0	0	0
DNAJC13	23317	ucsc.edu	37	3	132214006	132214006	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	51	5	51	0	0	0	0	0	0
NPHP3	27031	bcgsc.ca	37	3	132434056	132434056	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	113	8	124	2	0	0	0	0	0
CEP63	80254	bcgsc.ca	37	3	134256003	134256003	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	118	7	155	2	0	0	0	0	0
DBR1	51163	broad.mit.edu	37	3	137892448	137892448	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	170	4	194	1	7	7	0	0	0
ACPL2	92370	bcgsc.ca	37	3	140997284	140997284	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	120	9	135	1	1	1	0	0	0
IQCJ-SCHIP1	100505385	bcgsc.ca	37	3	159584069	159584069	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	239	10	214	3	0	0	0	0	0
SCARNA7	677767	ucsc.edu;bcgsc.ca	37	3	160232961	160232961	+	RNA	SNP	A	A	G	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	48	10	42	0	1	1	0	0	0
SLC2A2	6514	broad.mit.edu;bcgsc.ca	37	3	170723087	170723087	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	151	9	178	0	0	0	0	0	0
PLD1	5337	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	171394619	171394619	+	Silent	SNP	G	G	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	47	19	39	0	0	0	0	0	0
EIF4A2	1974	bcgsc.ca	37	3	186502250	186502250	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	136	9	135	1	191	191	0	0	0
LEPREL1	55214	ucsc.edu	37	3	189705318	189705318	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	43	5	51	0	1	1	0	0	0
ATP13A5	344905	ucsc.edu	37	3	193049094	193049094	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	42	4	46	0	0	0	0	0	0
MUC4	4585	ucsc.edu	37	3	195492170	195492170	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	34	4	31	0	0	0	0	0	0
HTT	3064	bcgsc.ca	37	4	3237928	3237928	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	167	11	173	3	37	37	0	0	0
BOD1L1	259282	ucsc.edu	37	4	13590375	13590375	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	28	4	47	0	12	12	0	0	0
SLC34A2	10568	bcgsc.ca	37	4	25673274	25673274	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	315	13	320	0	33	33	0	0	0
SEL1L3	23231	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	25806261	25806261	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	55	23	55	0	4	4	0	0	0
SEL1L3	23231	bcgsc.ca	37	4	25823745	25823745	+	Missense_Mutation	SNP	C	C	A	rs147554165	alternate_allele	TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	127	7	148	2	0	0	0	0	0
SHROOM3	57619	ucsc.edu	37	4	77675776	77675776	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	30	4	31	0	4	4	0	0	0
SLC9B1	150159	ucsc.edu	37	4	103912836	103912836	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	19	4	21	0	1	1	0	0	0
C4orf21	55345	ucsc.edu	37	4	113483537	113483537	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	33	4	22	0	0	0	0	0	0
TRIM2	23321	ucsc.edu	37	4	154214211	154214211	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	40	4	56	1	15	15	0	0	0
GRIA2	2891	bcgsc.ca	37	4	158224864	158224864	+	Silent	SNP	C	C	A	rs138262729	alternate_allele	TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	283	10	263	1	0	0	0	0	0
NAF1	92345	ucsc.edu	37	4	164058402	164058402	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	49	6	67	0	0	0	0	0	0
STOX2	56977	broad.mit.edu	37	4	184931856	184931856	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	70	8	67	0	0	0	0	0	0
ACSL1	2180	broad.mit.edu;ucsc.edu	37	4	185724472	185724472	+	Splice_Site	SNP	A	A	T	rs201598489	alternate_allele	TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	12	8	13	0	36	0	36	0	0
FAM149A	25854	hgsc.bcm.edu	37	4	187088232	187088232	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	37	2	43	0	47	47	0	0	0
KLKB1	3818	bcgsc.ca	37	4	187159476	187159476	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	98	8	107	0	0	0	0	0	0
PDCD6	10016	ucsc.edu	37	5	311470	311470	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	38	4	48	0	0	0	0	0	0
AHRR	57491	bcgsc.ca	37	5	353872	353872	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	81	7	98	0	1	1	0	0	0
CTNND2	1501	ucsc.edu	37	5	11082957	11082957	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	41	4	47	0	0	0	0	0	0
CTNND2	1501	bcgsc.ca	37	5	11117619	11117619	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	190	9	192	1	0	0	0	0	0
MYO10	4651	ucsc.edu	37	5	16671056	16671056	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	30	4	46	0	16	16	0	0	0
C5orf51	285636	ucsc.edu	37	5	41917336	41917336	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	42	4	40	0	7	7	0	0	0
NLN	57486	bcgsc.ca	37	5	65058813	65058813	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	114	10	118	1	8	8	0	0	0
TNPO1	3842	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	72151675	72151675	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	81	20	95	0	9	7	2	0	0
GPR98	84059	ucsc.edu	37	5	90107028	90107028	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	35	4	39	0	0	0	0	0	0
FNIP1	96459	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	131007378	131007379	+	Frame_Shift_Del	DEL	CT	CT	-	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	CT	CT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	144	61	139	0	0	0	0	0	0
HSPA9	3313	ucsc.edu	37	5	137895763	137895763	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	39	5	32	0	422	422	0	0	0
IK	3550	ucsc.edu	37	5	140041204	140041204	+	Splice_Site	SNP	G	G	T	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	17	4	22	0	2	2	0	0	0
ARAP3	64411	ucsc.edu	37	5	141038151	141038151	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	38	4	35	0	0	0	0	0	0
FGF1	2246	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	141974869	141974869	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	105	36	104	0	0	0	0	0	0
TCERG1	10915	ucsc.edu	37	5	145838722	145838722	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	49	5	48	0	4	4	0	0	0
TCERG1	10915	ucsc.edu	37	5	145862222	145862222	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	39	4	58	1	9	9	0	0	0
TSPAN17	26262	bcgsc.ca	37	5	176078875	176078875	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	105	8	104	0	49	49	0	0	0
PRPF4B	8899	ucsc.edu	37	6	4037655	4037655	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	34	5	72	0	16	16	0	0	0
RREB1	6239	ucsc.edu	37	6	7248744	7248744	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	58	6	59	1	0	0	0	0	0
SYCP2L	221711	ucsc.edu	37	6	10927481	10927481	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	43	4	77	0	0	0	0	0	0
KIF13A	63971	broad.mit.edu;bcgsc.ca	37	6	17783900	17783900	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	8	4	28	0	3	1	2	0	0
HIST1H2AH	85235	ucsc.edu;bcgsc.ca	37	6	27115149	27115149	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	83	8	141	1	0	0	0	0	0
NKAPL	222698	ucsc.edu	37	6	28227237	28227237	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	34	4	64	0	0	0	0	0	0
PPP1R10	5514	bcgsc.ca	37	6	30573708	30573708	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	364	14	598	9	0	0	0	0	0
TUBB	203068	ucsc.edu	37	6	30690318	30690318	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	38	4	45	0	1	1	0	0	0
GPANK1	7918	ucsc.edu	37	6	31630179	31630179	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	57	6	103	1	24	24	0	0	0
EHMT2	10919	ucsc.edu	37	6	31850772	31850772	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	34	4	57	0	14	14	0	0	0
MNF1	84300	ucsc.edu	37	6	33679343	33679343	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	42	4	70	0	52	52	0	0	0
PPARD	5467	ucsc.edu	37	6	35388049	35388049	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	36	4	74	0	0	0	0	0	0
TULP1	7287	ucsc.edu	37	6	35473528	35473528	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	28	4	53	1	0	0	0	0	0
UBR2	23304	bcgsc.ca	37	6	42585064	42585064	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	608	17	106	0	0	0	0	0	0
UBR2	23304	broad.mit.edu	37	6	42611951	42611951	+	Splice_Site	DEL	G	G	-	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	1177	6	159	0	0	0	0	0	0
XPO5	57510	bcgsc.ca	37	6	43498444	43498444	+	Silent	SNP	G	G	T	rs201384892	alternate_allele	TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	799	25	154	1	58	57	0	1	0
XPO5	57510	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	43541219	43541219	+	Silent	SNP	G	G	C	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	433	223	84	0	2	0	2	0	0
CDC5L	988	broad.mit.edu;bcgsc.ca	37	6	44390390	44390390	+	Silent	SNP	T	T	C	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	1017	39	192	0	0	0	0	0	0
TNFRSF21	27242	broad.mit.edu	37	6	47251682	47251682	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	254	4	131	0	0	0	0	0	0
GFRAL	389400	bcgsc.ca	37	6	55198596	55198596	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	150	9	302	3	0	0	0	0	0
CEP57L1	285753	ucsc.edu	37	6	109484164	109484164	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	32	4	49	0	6	6	0	0	0
LAMA2	3908	bcgsc.ca	37	6	129670483	129670483	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	165	9	203	0	0	0	0	0	0
SLC18B1	116843	bcgsc.ca	37	6	133092247	133092247	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	500	18	532	2	14	14	0	0	0
UTRN	7402	ucsc.edu	37	6	144869982	144869982	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	44	5	63	1	0	0	0	0	0
LATS1	9113	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	150005370	150005370	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	172	77	179	0	4	0	4	0	0
ESR1	2099	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	152201893	152201893	+	Silent	SNP	A	A	G	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	41	13	52	0	0	0	0	0	0
MYCT1	80177	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	153043198	153043198	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	103	46	117	0	4	4	0	0	0
IPCEF1	26034	broad.mit.edu	37	6	154521109	154521109	+	Silent	SNP	C	C	G	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	110	3	117	0	0	0	0	0	0
TMEM242	729515	bcgsc.ca	37	6	157743806	157743806	+	Silent	SNP	C	C	A	rs113617786	byfrequency;by1000genomes;alternate_allele	TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	209	13	248	3	26	26	0	0	0
FNDC1	84624	ucsc.edu	37	6	159655425	159655425	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	42	5	43	0	2	2	0	0	0
LPAL2	80350	bcgsc.ca	37	6	160898293	160898293	+	RNA	SNP	C	C	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	136	8	153	1	1	1	0	0	0
TTLL2	83887	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	167755036	167755036	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	135	51	142	0	0	0	0	0	0
FOXK1	221937	hgsc.bcm.edu;bcgsc.ca	37	7	4780549	4780549	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	174	10	199	1	4	4	0	0	0
FBXL18	80028	ucsc.edu	37	7	5553290	5553290	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	18	4	29	0	0	0	0	0	0
PMS2	5395	ucsc.edu	37	7	6031661	6031661	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	47	5	47	0	13	13	0	0	0
PKD1L1	168507	ucsc.edu;bcgsc.ca	37	7	47927731	47927731	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	63	7	72	0	0	0	0	0	0
AUTS2	26053	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	70255838	70255838	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	45	13	45	0	0	0	0	0	0
TBL2	26608	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	72988278	72988278	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	89	27	110	0	0	0	0	0	0
ABHD11	83451	ucsc.edu	37	7	73152038	73152038	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	48	5	57	0	26	26	0	0	0
WBSCR27	155368	ucsc.edu	37	7	73249099	73249099	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	35	4	36	0	25	25	0	0	0
ZP3	7784	hgsc.bcm.edu	37	7	76069913	76069913	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	116	6	118	2	7	7	0	0	0
PON3	5446	bcgsc.ca	37	7	94993241	94993241	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	340	14	360	5	0	0	0	0	0
TRRAP	8295	bcgsc.ca	37	7	98558965	98558965	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	151	9	131	1	4	4	0	0	0
MCM7	4176	bcgsc.ca	37	7	99696247	99696247	+	Missense_Mutation	SNP	C	C	A	rs146605550	alternate_allele	TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	181	9	207	2	7	7	0	0	0
CUX1	1523	broad.mit.edu	37	7	101892133	101892135	+	In_Frame_Del	DEL	CAG	CAG	-	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	CAG	CAG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	6	2	6	0	0	0	0	0	0
IMPDH1	3614	ucsc.edu	37	7	128040582	128040582	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	27	4	19	0	0	0	0	0	0
CPA1	1357	ucsc.edu;bcgsc.ca	37	7	130023240	130023240	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	61	6	58	0	0	0	0	0	0
KIAA1147	57189	ucsc.edu	37	7	141365074	141365074	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	32	5	27	0	9	9	0	0	0
PRSS37	136242	bcgsc.ca	37	7	141537867	141537867	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	249	12	275	1	0	0	0	0	0
TRPV5	56302	ucsc.edu	37	7	142612698	142612698	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	31	4	56	1	0	0	0	0	0
ZNF862	643641	ucsc.edu	37	7	149558077	149558077	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	28	4	19	0	1	1	0	0	0
ZNF862	643641	bcgsc.ca	37	7	149559030	149559030	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	153	9	174	1	3	3	0	0	0
PAXIP1	22976	ucsc.edu	37	7	154738451	154738451	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	38	4	43	0	14	14	0	0	0
INSIG1	3638	ucsc.edu	37	7	155090373	155090373	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	57	6	47	0	20	20	0	0	0
FAM86B3P	286042	broad.mit.edu;ucsc.edu	37	8	8092055	8092055	+	RNA	SNP	G	G	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	48	9	52	0	1	1	0	0	0
FAM86B3P	286042	broad.mit.edu	37	8	8092061	8092061	+	RNA	SNP	C	C	T	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	45	8	50	0	1	1	0	0	0
MFHAS1	9258	hgsc.bcm.edu	37	8	8750559	8750559	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	15	5	3	0	0	0	0	0	0
MTUS1	57509	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	17581310	17581310	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	137	59	235	1	3	1	2	0	0
SH2D4A	63898	ucsc.edu	37	8	19218724	19218724	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	41	4	57	0	0	0	0	0	0
PHYHIP	9796	ucsc.edu	37	8	22081815	22081815	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	40	4	60	1	2	2	0	0	0
TNFRSF10C	8794	ucsc.edu;bcgsc.ca	37	8	22969260	22969260	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	55	7	60	0	4	4	0	0	0
PLAT	5327	ucsc.edu	37	8	42045067	42045067	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	44	4	44	0	2	2	0	0	0
HGSNAT	138050	ucsc.edu	37	8	43028883	43028883	+	Missense_Mutation	SNP	C	C	A	rs121908282	alternate_allele	TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	37	5	31	0	3	3	0	0	0
CA8	767	ucsc.edu	37	8	61178599	61178599	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	37	5	50	0	0	0	0	0	0
CNBD1	168975	ucsc.edu	37	8	88296927	88296927	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	31	4	34	0	0	0	0	0	0
ESRP1	54845	ucsc.edu	37	8	95704908	95704908	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	69	7	95	1	0	0	0	0	0
TMEM65	157378	ucsc.edu	37	8	125326242	125326242	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	48	5	50	0	13	13	0	0	0
ZFAT	57623	ucsc.edu;bcgsc.ca	37	8	135614687	135614687	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	70	7	80	1	4	4	0	0	0
RHPN1	114822	ucsc.edu	37	8	144459576	144459576	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	51	5	48	0	7	7	0	0	0
TSTA3	7264	bcgsc.ca	37	8	144696827	144696827	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	121	7	109	1	82	82	0	0	0
NRBP2	340371	ucsc.edu	37	8	144920880	144920880	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	34	4	25	0	24	24	0	0	0
TONSL	4796	bcgsc.ca	37	8	145666407	145666407	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	115	8	138	0	2	2	0	0	0
PDCD1LG2	80380	ucsc.edu	37	9	5563195	5563195	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	38	5	49	0	1	1	0	0	0
KIF24	347240	ucsc.edu	37	9	34256381	34256381	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	46	5	61	1	2	2	0	0	0
KIAA1161	57462	ucsc.edu	37	9	34372144	34372144	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	46	6	35	0	1	1	0	0	0
ARID3C	138715	bcgsc.ca	37	9	34622031	34622031	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	164	10	170	4	0	0	0	0	0
CLTA	1211	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	9	36211662	36211662	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	111	41	153	0	0	0	0	0	0
FBXO10	26267	bcgsc.ca	37	9	37531916	37531916	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	95	8	85	0	0	0	0	0	0
TJP2	9414	ucsc.edu	37	9	71843018	71843018	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	19	4	17	0	0	0	0	0	0
TRPM6	140803	ucsc.edu;bcgsc.ca	37	9	77343157	77343157	+	Missense_Mutation	SNP	G	G	T	rs145398520	alternate_allele	TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	45	6	57	0	0	0	0	0	0
TRPM6	140803	ucsc.edu	37	9	77473643	77473643	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	32	4	54	0	0	0	0	0	0
TGFBR1	7046	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	101894937	101894937	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	137	43	161	0	9	7	2	0	0
ALDOB	229	bcgsc.ca	37	9	104187182	104187182	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	103	8	113	0	15	15	0	0	0
FAM206A	54942	ucsc.edu	37	9	111701895	111701895	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	50	6	66	0	14	14	0	0	0
AKNA	80709	ucsc.edu	37	9	117120448	117120448	+	Splice_Site	SNP	C	C	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	54	6	56	0	0	0	0	0	0
DAB2IP	153090	broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	124522288	124522288	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	72	18	72	0	14	9	5	0	0
COQ4	51117	bcgsc.ca	37	9	131095814	131095814	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	105	40	122	3	86	50	36	0	0
PPP2R4	5524	ucsc.edu	37	9	131899917	131899917	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	42	4	55	0	50	50	0	0	0
TOR1A	1861	ucsc.edu	37	9	132581177	132581177	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	34	4	32	0	42	42	0	0	0
GPR107	57720	bcgsc.ca	37	9	132841929	132841929	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	78	7	87	0	17	17	0	0	0
GPR107	57720	ucsc.edu	37	9	132866819	132866819	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	38	4	27	0	0	0	0	0	0
NUP214	8021	bcgsc.ca	37	9	134004848	134004848	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	193	14	181	2	6	5	1	0	0
POMT1	10585	ucsc.edu	37	9	134398373	134398373	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	13	4	24	0	30	30	0	0	0
PPP1R26	9858	ucsc.edu	37	9	138376837	138376837	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	39	4	42	0	6	6	0	0	0
KCNT1	57582	ucsc.edu	37	9	138651570	138651570	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	59	6	64	0	0	0	0	0	0
EXD3	54932	ucsc.edu	37	9	140243931	140243931	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	39	4	28	0	5	5	0	0	0
PRKX	5613	ucsc.edu	37	X	3530275	3530275	+	Missense_Mutation	SNP	G	G	T	rs149966538	alternate_allele	TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	35	4	56	0	4	4	0	0	0
TBL1X	6907	ucsc.edu	37	X	9652190	9652190	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	44	5	26	0	7	7	0	0	0
WWC3	55841	ucsc.edu	37	X	10098103	10098103	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	41	4	47	0	9	9	0	0	0
PHEX	5251	bcgsc.ca	37	X	22231074	22231074	+	Silent	SNP	C	C	A	rs137853271	alternate_allele	TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	98	7	107	0	0	0	0	0	0
DDX53	168400	ucsc.edu	37	X	23019234	23019234	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	57	6	54	1	0	0	0	0	0
MAGEB18	286514	ucsc.edu	37	X	26157312	26157312	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	30	4	37	0	0	0	0	0	0
DMD	1756	ucsc.edu	37	X	31497159	31497159	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	39	4	28	0	0	0	0	0	0
RPGR	6103	ucsc.edu	37	X	38156665	38156665	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	23	4	38	0	1	1	0	0	0
ATP6AP2	10159	bcgsc.ca	37	X	40450512	40450512	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	79	8	102	0	170	170	0	0	0
MED14	9282	ucsc.edu	37	X	40552060	40552060	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	43	4	27	0	8	8	0	0	0
ZNF157	7712	ucsc.edu	37	X	47230101	47230101	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	50	5	41	0	0	0	0	0	0
KCND1	3750	ucsc.edu	37	X	48822468	48822468	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	41	4	42	0	0	0	0	0	0
HUWE1	10075	ucsc.edu	37	X	53629556	53629556	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	37	4	25	0	13	13	0	0	0
APEX2	27301	ucsc.edu	37	X	55028715	55028715	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	37	4	25	0	4	4	0	0	0
FAAH2	158584	ucsc.edu	37	X	57313352	57313352	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	23	4	16	0	0	0	0	0	0
PDZD11	51248	ucsc.edu	37	X	69508002	69508002	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	31	4	42	0	57	57	0	0	0
SH3BGRL	6451	ucsc.edu	37	X	80533900	80533900	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	42	4	37	0	0	0	0	0	0
OCRL	4952	ucsc.edu	37	X	128709198	128709198	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	32	4	62	0	18	18	0	0	0
XPNPEP2	7512	ucsc.edu	37	X	128879233	128879233	+	Missense_Mutation	SNP	G	G	T	rs201743054	alternate_allele	TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	59	6	46	0	0	0	0	0	0
ZNF275	10838	ucsc.edu	37	X	152612308	152612308	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	49	5	42	0	3	3	0	0	0
PDZD4	57595	ucsc.edu	37	X	153069983	153069983	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	36	4	31	0	1	1	0	0	0
PDZD4	57595	ucsc.edu	37	X	153070281	153070281	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	37	4	46	0	1	1	0	0	0
FLNA	2316	ucsc.edu	37	X	153595146	153595146	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	48	5	48	1	52	52	0	0	0
DKC1	1736	ucsc.edu	37	X	154002925	154002925	+	Missense_Mutation	SNP	G	G	T	rs121912299	alternate_allele	TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	31	4	28	0	44	44	0	0	0
ENTPD5	957	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	14	74443764	74443765	+	Splice_Site	INS	-	-	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	100	38	144	0	0	0	0	0	0
