Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	TTotCov	TVarCov	NTotCov	NVarCov	Trna_tot	Trna_ref	Trna_var	Trna_alt1	Trna_alt2
SCNN1D	6339	ucsc.edu	37	1	1221520	1221520	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	37	4	32	0	2	2	0	0	0
CCNL2	81669	bcgsc.ca	37	1	1323406	1323406	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	219	11	239	2	67	67	0	0	0
SPATA21	374955	ucsc.edu	37	1	16736221	16736221	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	44	5	29	0	0	0	0	0	0
ARHGEF10L	55160	ucsc.edu	37	1	17930021	17930021	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	31	4	37	0	51	51	0	0	0
UBR4	23352	ucsc.edu	37	1	19431151	19431151	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	41	4	42	0	14	14	0	0	0
UBR4	23352	ucsc.edu	37	1	19500067	19500067	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	48	5	47	0	3	3	0	0	0
TMEM57	55219	ucsc.edu	37	1	25815664	25815664	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	31	4	28	0	0	0	0	0	0
COL16A1	1307	ucsc.edu	37	1	32119278	32119278	+	Splice_Site	SNP	C	C	A	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	44	4	63	0	0	0	0	0	0
CLSPN	63967	bcgsc.ca	37	1	36219437	36219437	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	175	9	171	2	3	3	0	0	0
ZC3H12A	80149	ucsc.edu	37	1	37948498	37948498	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	43	5	63	0	10	10	0	0	0
MFSD2A	84879	ucsc.edu	37	1	40435181	40435181	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	34	4	36	0	0	0	0	0	0
TIE1	7075	ucsc.edu	37	1	43777754	43777754	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	42	4	55	0	1	1	0	0	0
PTPRF	5792	bcgsc.ca	37	1	44064422	44064422	+	Silent	SNP	G	G	T	rs149885869	byfrequency;alternate_allele	TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	114	8	130	0	21	21	0	0	0
BEST4	266675	ucsc.edu	37	1	45250978	45250978	+	Splice_Site	SNP	C	C	A	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	31	4	27	0	0	0	0	0	0
NASP	4678	bcgsc.ca	37	1	46073707	46073707	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	261	13	264	1	26	26	0	0	0
ZYG11B	79699	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	53287196	53287196	+	Silent	SNP	T	T	C	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	75	35	71	0	3	2	1	0	0
ECHDC2	55268	ucsc.edu	37	1	53373613	53373613	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	39	4	50	0	267	267	0	0	0
USP24	23358	ucsc.edu	37	1	55560939	55560939	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	52	5	34	0	0	0	0	0	0
MSH4	4438	ucsc.edu	37	1	76378536	76378536	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	42	4	55	2	0	0	0	0	0
ABCA4	24	bcgsc.ca	37	1	94543340	94543340	+	Missense_Mutation	SNP	C	C	A	rs145614671	alternate_allele	TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	230	10	262	3	0	0	0	0	0
LRRC39	127495	bcgsc.ca	37	1	100618000	100618000	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	240	9	226	3	1	1	0	0	0
WDR3	10885	bcgsc.ca	37	1	118496663	118496663	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	216	12	212	3	33	33	0	0	0
BCL9	607	ucsc.edu;bcgsc.ca	37	1	147092056	147092056	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	65	7	62	0	5	5	0	0	0
SETDB1	9869	bcgsc.ca	37	1	150931733	150931733	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	107	7	106	1	32	32	0	0	0
SELENBP1	8991	ucsc.edu	37	1	151342002	151342002	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	34	4	28	0	66	66	0	0	0
FLG	2312	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	152276908	152276908	+	Missense_Mutation	SNP	G	G	A	rs200036291		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	439	151	442	1	0	0	0	0	0
LMNA	4000	ucsc.edu	37	1	156106796	156106796	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	41	4	57	0	862	859	1	1	1
IQGAP3	128239	ucsc.edu	37	1	156508742	156508742	+	Missense_Mutation	SNP	C	C	A	rs141646662	alternate_allele	TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	29	4	39	0	27	27	0	0	0
C1orf111	284680	bcgsc.ca	37	1	162343861	162343861	+	Missense_Mutation	SNP	C	C	A	rs142892903	byfrequency;alternate_allele	TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	416	13	359	1	0	0	0	0	0
FMO4	2329	ucsc.edu	37	1	171310950	171310950	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	45	5	58	0	25	25	0	0	0
CACNA1E	777	ucsc.edu	37	1	181546958	181546958	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	43	5	21	0	1	1	0	0	0
SMG7	9887	bcgsc.ca	37	1	183514298	183514298	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	172	9	178	1	32	32	0	0	0
CDC73	79577	ucsc.edu	37	1	193117091	193117091	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	39	5	36	0	0	0	0	0	0
KIF21B	23046	ucsc.edu	37	1	200944756	200944756	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	43	4	48	0	2	2	0	0	0
IGFN1	91156	ucsc.edu	37	1	201186588	201186588	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	50	5	71	1	0	0	0	0	0
ARL8A	127829	bcgsc.ca	37	1	202107544	202107544	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	96	8	101	2	95	95	0	0	0
PIGR	5284	bcgsc.ca	37	1	207112465	207112465	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	75	7	69	0	0	0	0	0	0
LAMB3	3914	ucsc.edu	37	1	209804045	209804045	+	Silent	SNP	G	G	T	rs200006309		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	34	4	58	0	0	0	0	0	0
CAPN2	824	ucsc.edu;bcgsc.ca	37	1	223905506	223905506	+	Missense_Mutation	SNP	C	C	A	rs144316024	alternate_allele	TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	57	7	54	0	189	187	1	0	1
CAPN2	824	bcgsc.ca	37	1	223940656	223940656	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	169	9	163	1	0	0	0	0	0
PYCR2	29920	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	1	226109611	226109611	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	35	7	31	0	154	105	49	0	0
KIAA1804	0	ucsc.edu	37	1	233511777	233511777	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	61	6	61	1	9	9	0	0	0
OR2G2	81470	bcgsc.ca	37	1	247751934	247751934	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	138	9	154	1	0	0	0	0	0
SKIDA1	387640	ucsc.edu	37	10	21806499	21806499	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	35	4	30	0	3	3	0	0	0
MLLT10	8028	ucsc.edu	37	10	22022493	22022493	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	31	4	28	0	12	12	0	0	0
HSD17B7P2	158160	broad.mit.edu	37	10	38654432	38654432	+	RNA	SNP	A	A	G	rs2257765	bysubmitter	TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	81	3	74	0	10	1	9	0	0
RBP3	5949	hgsc.bcm.edu;bcgsc.ca	37	10	48390462	48390462	+	Missense_Mutation	SNP	G	G	T	rs147118201	byfrequency;alternate_allele	TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	149	8	167	0	0	0	0	0	0
HERC4	26091	ucsc.edu	37	10	69750916	69750916	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	53	5	50	0	9	9	0	0	0
DUSP13	51207	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	76868897	76868897	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	58	25	49	0	0	0	0	0	0
DLG5	9231	hgsc.bcm.edu;bcgsc.ca	37	10	79590038	79590038	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	107	7	113	1	4	4	0	0	0
LIPA	3988	bcgsc.ca	37	10	90975767	90975767	+	Splice_Site	SNP	C	C	A	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	120	8	101	0	0	0	0	0	0
LIPA	3988	bcgsc.ca	37	10	90983534	90983534	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	179	10	134	1	41	41	0	0	0
SLC35G1	159371	bcgsc.ca	37	10	95660575	95660575	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	136	8	122	2	0	0	0	0	0
TBC1D12	23232	ucsc.edu	37	10	96260046	96260046	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	41	4	51	0	7	7	0	0	0
ZDHHC16	84287	ucsc.edu	37	10	99216605	99216605	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	38	4	37	0	28	28	0	0	0
GOT1	2805	bcgsc.ca	37	10	101165961	101165961	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	273	10	288	1	417	416	0	1	0
COX15	1355	bcgsc.ca	37	10	101476161	101476161	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	215	11	222	0	34	34	0	0	0
BTRC	8945	bcgsc.ca	37	10	103310585	103310585	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	112	8	83	0	12	12	0	0	0
CTBP2	1488	ucsc.edu	37	10	126681869	126681869	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	35	4	41	0	48	48	0	0	0
DPYSL4	10570	ucsc.edu;bcgsc.ca	37	10	134012450	134012450	+	Silent	SNP	C	C	T	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	67	8	53	0	0	0	0	0	0
OSBPL5	114879	bcgsc.ca	37	11	3128610	3128610	+	Silent	SNP	G	G	T	rs144743928	alternate_allele	TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	281	12	270	0	22	22	0	0	0
TRIM21	6737	ucsc.edu	37	11	4406874	4406874	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	31	4	27	0	15	15	0	0	0
RRP8	23378	ucsc.edu	37	11	6622549	6622549	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	39	4	32	0	8	8	0	0	0
LOC100126784	0	ucsc.edu;bcgsc.ca	37	11	19735525	19735525	+	RNA	SNP	G	G	T	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	37	5	35	0	1	1	0	0	0
ABTB2	25841	ucsc.edu	37	11	34186369	34186369	+	Splice_Site	SNP	C	C	A	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	43	5	47	0	1	1	0	0	0
PAMR1	25891	ucsc.edu	37	11	35489566	35489566	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	11	4	16	0	0	0	0	0	0
DGKZ	8525	ucsc.edu	37	11	46401096	46401096	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	29	4	26	0	71	71	0	0	0
SLC43A1	8501	ucsc.edu	37	11	57268294	57268294	+	Silent	SNP	C	C	A	rs183422510	alternate_allele	TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	31	4	44	0	2	2	0	0	0
DDB1	1642	ucsc.edu	37	11	61067660	61067660	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	45	5	49	0	224	224	0	0	0
LRRN4CL	221091	ucsc.edu	37	11	62455660	62455660	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	34	4	36	0	0	0	0	0	0
SLC22A25	387601	bcgsc.ca	37	11	62997085	62997085	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	85	8	96	0	0	0	0	0	0
MARK2	2011	ucsc.edu	37	11	63670254	63670254	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	35	4	37	0	0	0	0	0	0
CCDC88B	283234	ucsc.edu	37	11	64120959	64120959	+	Missense_Mutation	SNP	G	G	T	rs141747219	alternate_allele	TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	42	4	47	0	0	0	0	0	0
CDC42BPG	55561	ucsc.edu	37	11	64606982	64606982	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	42	4	40	0	14	14	0	0	0
NAALADL1	10004	ucsc.edu	37	11	64812917	64812917	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	37	5	36	0	5	5	0	0	0
C11orf68	83638	ucsc.edu	37	11	65685350	65685350	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	42	4	48	0	64	64	0	0	0
DPP3	10072	broad.mit.edu;bcgsc.ca	37	11	66272197	66272197	+	Missense_Mutation	SNP	C	C	T	rs200243081		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	173	14	167	0	49	47	2	0	0
RSF1	51773	ucsc.edu;bcgsc.ca	37	11	77412531	77412531	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	256	96	275	3	6	3	3	0	0
PCF11	51585	ucsc.edu	37	11	82876757	82876757	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	40	5	41	0	8	8	0	0	0
SNORA18	677805	ucsc.edu;bcgsc.ca	37	11	93466653	93466653	+	RNA	SNP	C	C	A	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	63	7	68	0	14	14	0	0	0
CARD17	440068	bcgsc.ca	37	11	104971326	104971326	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	126	7	138	0	0	0	0	0	0
ATM	472	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	108206609	108206609	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	57	20	73	0	6	3	3	0	0
POU2AF1	5450	ucsc.edu;bcgsc.ca	37	11	111229616	111229616	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	51	7	45	0	0	0	0	0	0
C11orf1	64776	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	111753250	111753250	+	Silent	SNP	C	C	T	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	83	30	61	0	95	43	52	0	0
ZBTB16	7704	bcgsc.ca	37	11	114057706	114057706	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	142	8	167	0	1	1	0	0	0
TMPRSS13	84000	ucsc.edu	37	11	117779494	117779494	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	36	4	31	0	0	0	0	0	0
CDON	50937	ucsc.edu	37	11	125885328	125885328	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	53	5	54	0	0	0	0	0	0
IGSF9B	22997	bcgsc.ca	37	11	133799566	133799566	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	76	7	57	0	0	0	0	0	0
LEPREL2	10536	ucsc.edu	37	12	6946954	6946954	+	Silent	SNP	G	G	A	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	27	4	30	0	6	6	0	0	0
PHC1	1911	ucsc.edu	37	12	9070343	9070343	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	44	4	43	0	10	10	0	0	0
A2M	2	ucsc.edu	37	12	9252093	9252093	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	37	4	21	0	25	25	0	0	0
MANSC1	54682	broad.mit.edu	37	12	12483324	12483324	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	119	9	114	1	26	26	0	0	0
AEBP2	121536	ucsc.edu	37	12	19646846	19646846	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	37	4	44	0	32	32	0	0	0
PDZRN4	29951	bcgsc.ca	37	12	41967064	41967064	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	235	12	254	3	0	0	0	0	0
PLEKHA8P1	51054	ucsc.edu	37	12	45566906	45566906	+	RNA	SNP	C	C	A	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	41	4	49	0	0	0	0	0	0
FKBP11	51303	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	49319118	49319118	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	40	14	51	0	25	21	4	0	0
SCN8A	6334	ucsc.edu	37	12	52184277	52184277	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	47	6	30	0	0	0	0	0	0
KRT85	3891	bcgsc.ca	37	12	52754666	52754666	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	106	7	114	1	0	0	0	0	0
AAAS	8086	ucsc.edu	37	12	53708599	53708599	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	40	4	52	0	55	55	0	0	0
ERBB3	2065	bcgsc.ca	37	12	56489543	56489543	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	157	9	164	1	61	61	0	0	0
USP15	9958	bcgsc.ca	37	12	62798045	62798045	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	170	8	229	4	43	43	0	0	0
LEMD3	23592	bcgsc.ca	37	12	65637213	65637213	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	152	8	127	1	8	8	0	0	0
OTOGL	283310	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	80626779	80626779	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	80	34	90	0	0	0	0	0	0
NEDD1	121441	bcgsc.ca	37	12	97331137	97331137	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	104	8	136	0	12	12	0	0	0
TPCN1	53373	ucsc.edu	37	12	113705675	113705675	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	43	4	66	0	40	40	0	0	0
LHX5	64211	ucsc.edu;bcgsc.ca	37	12	113906073	113906073	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	69	7	88	1	0	0	0	0	0
SBNO1	55206	ucsc.edu	37	12	123795602	123795602	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	55	6	73	0	0	0	0	0	0
SNORA49	677829	bcgsc.ca	37	12	132515857	132515857	+	RNA	SNP	C	C	A	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	245	12	286	3	0	0	0	0	0
SGCG	6445	bcgsc.ca	37	13	23869611	23869611	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	171	8	158	1	0	0	0	0	0
LRCH1	23143	bcgsc.ca	37	13	47263286	47263286	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	182	9	188	1	10	10	0	0	0
ATP7B	540	bcgsc.ca	37	13	52539162	52539162	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	91	8	97	0	0	0	0	0	0
NEK3	4752	bcgsc.ca	37	13	52710338	52710338	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	141	10	120	1	5	5	0	0	0
TPTE2P3	220115	ucsc.edu	37	13	53106823	53106823	+	RNA	SNP	G	G	T	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	42	4	24	0	0	0	0	0	0
PCDH9	5101	bcgsc.ca	37	13	67800362	67800362	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	132	9	135	2	0	0	0	0	0
FGF14	2259	bcgsc.ca	37	13	102375269	102375269	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	149	7	143	0	2	2	0	0	0
MCF2L	23263	ucsc.edu	37	13	113729489	113729489	+	Missense_Mutation	SNP	C	C	A	rs145619176		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	35	4	28	0	0	0	0	0	0
PROZ	8858	bcgsc.ca	37	13	113814380	113814380	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	220	10	236	3	0	0	0	0	0
SALL2	6297	ucsc.edu	37	14	21991214	21991214	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	37	4	47	0	10	10	0	0	0
NFATC4	4776	ucsc.edu;bcgsc.ca	37	14	24839779	24839779	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	73	8	59	1	3	3	0	0	0
NID2	22795	bcgsc.ca	37	14	52472488	52472488	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	154	9	123	0	43	43	0	0	0
RTN1	6252	ucsc.edu	37	14	60194363	60194363	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	44	6	56	1	0	0	0	0	0
IRF2BPL	64207	ucsc.edu	37	14	77492854	77492854	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	44	5	53	0	57	57	0	0	0
IRF2BPL	64207	ucsc.edu	37	14	77492866	77492866	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	45	4	55	0	66	66	0	0	0
TCL6	27004	ucsc.edu	37	14	96131358	96131358	+	RNA	SNP	G	G	T	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	30	4	25	0	0	0	0	0	0
TCL1B	9623	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	14	96152848	96152848	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	128	57	134	0	0	0	0	0	0
VRK1	7443	bcgsc.ca	37	14	97299934	97299934	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	109	8	104	1	3	3	0	0	0
HERC2	8924	ucsc.edu	37	15	28377310	28377310	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	27	4	46	0	20	20	0	0	0
HERC2	8924	hgsc.bcm.edu	37	15	28431770	28431770	+	Silent	SNP	T	T	C	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	55	3	52	0	9	9	0	0	0
HERC2	8924	ucsc.edu	37	15	28519478	28519478	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	27	4	34	0	1	1	0	0	0
ANP32AP1	723972	broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	35529913	35529913	+	RNA	SNP	C	C	G	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	117	37	154	0	242	242	0	0	0
PAK6	56924	ucsc.edu	37	15	40558565	40558565	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	33	5	23	0	3	3	0	0	0
PLCB2	5330	ucsc.edu	37	15	40589759	40589759	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	70	7	73	0	6	6	0	0	0
PLCB2	5330	ucsc.edu	37	15	40594676	40594676	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	33	5	34	0	0	0	0	0	0
C15orf52	388115	ucsc.edu	37	15	40633027	40633027	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	25	4	21	0	4	4	0	0	0
DISP2	85455	ucsc.edu	37	15	40660063	40660063	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	36	4	30	0	0	0	0	0	0
MGA	23269	hgsc.bcm.edu	37	15	42005580	42005580	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	31	2	30	0	3	3	0	0	0
MGA	23269	ucsc.edu	37	15	42035309	42035309	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	44	4	34	0	3	3	0	0	0
MGA	23269	ucsc.edu	37	15	42058368	42058368	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	40	4	55	0	1	1	0	0	0
HERC1	8925	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	63978661	63978661	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	299	125	333	0	3	3	0	0	0
RASL12	51285	ucsc.edu	37	15	65350948	65350948	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	30	4	47	0	11	11	0	0	0
MAP2K5	5607	ucsc.edu;bcgsc.ca	37	15	67878243	67878243	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	64	7	79	0	4	4	0	0	0
MIR629	693214	bcgsc.ca	37	15	70371784	70371784	+	RNA	SNP	C	C	T	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	35	13	32	0	0	0	0	0	0
C15orf59	388135	bcgsc.ca	37	15	74032722	74032722	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	100	7	106	1	2	2	0	0	0
SIN3A	25942	bcgsc.ca	37	15	75688800	75688800	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	110	7	113	1	17	17	0	0	0
ZNF592	9640	ucsc.edu	37	15	85341233	85341233	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	37	4	55	1	25	25	0	0	0
MFGE8	4240	bcgsc.ca	37	15	89449124	89449124	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	104	8	118	2	0	0	0	0	0
GABARAPL3	23766	ucsc.edu	37	15	90892173	90892173	+	RNA	SNP	G	G	T	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	39	4	36	1	0	0	0	0	0
TTC23	64927	bcgsc.ca	37	15	99740160	99740160	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	180	11	173	3	13	13	0	0	0
MPG	4350	ucsc.edu	37	16	135623	135623	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	37	4	31	0	216	216	0	0	0
ZNF598	90850	ucsc.edu	37	16	2049729	2049729	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	38	4	35	0	26	26	0	0	0
ABCC6	368	ucsc.edu	37	16	16248493	16248493	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	42	4	47	0	0	0	0	0	0
SCNN1B	6338	ucsc.edu	37	16	23391987	23391987	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	48	5	48	0	0	0	0	0	0
CLN3	1201	ucsc.edu;bcgsc.ca	37	16	28502879	28502879	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	57	7	50	0	0	0	0	0	0
CD19	930	ucsc.edu	37	16	28948385	28948385	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	30	4	21	0	0	0	0	0	0
YPEL3	83719	ucsc.edu	37	16	30106719	30106719	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	24	4	21	0	28	28	0	0	0
ZNF646	9726	ucsc.edu	37	16	31091054	31091054	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	46	5	56	0	7	7	0	0	0
ITGAD	3681	bcgsc.ca	37	16	31422760	31422760	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	260	11	242	1	0	0	0	0	0
MYLK3	91807	ucsc.edu	37	16	46766545	46766545	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	35	4	41	0	1	1	0	0	0
RBL2	5934	ucsc.edu	37	16	53499470	53499470	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	94	1	104	1	26	20	6	0	0
PLEKHG4	25894	ucsc.edu	37	16	67318719	67318719	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	34	4	44	0	0	0	0	0	0
ACD	65057	ucsc.edu	37	16	67693885	67693885	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	33	4	39	0	24	24	0	0	0
RANBP10	57610	broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	67840265	67840265	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	28	6	26	0	4	1	3	0	0
NFAT5	10725	ucsc.edu;bcgsc.ca	37	16	69602415	69602415	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	56	16	79	0	4	3	1	0	0
NFAT5	10725	hgsc.bcm.edu	37	16	69718811	69718811	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	98	5	91	0	13	13	0	0	0
AP1G1	164	bcgsc.ca	37	16	71768554	71768554	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	432	16	429	3	25	25	0	0	0
IST1	9798	bcgsc.ca	37	16	71961684	71961684	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	283	11	278	3	99	99	0	0	0
CA5A	763	ucsc.edu	37	16	87960479	87960479	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	21	4	11	0	0	0	0	0	0
SLC43A2	124935	ucsc.edu	37	17	1518290	1518290	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	38	4	34	0	10	10	0	0	0
PRPF8	10594	bcgsc.ca	37	17	1565398	1565398	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	189	9	147	0	49	49	0	0	0
SGSM2	9905	ucsc.edu	37	17	2266794	2266794	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	19	5	33	0	10	0	10	0	0
USP6	9098	bcgsc.ca	37	17	5035720	5035720	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	267	10	283	4	0	0	0	0	0
RNASEK-C17orf49	100529209	ucsc.edu	37	17	6917623	6917623	+	RNA	SNP	C	C	A	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	27	4	37	0	893	891	1	0	1
DLG4	1742	ucsc.edu	37	17	7106601	7106601	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	30	4	32	0	1	1	0	0	0
DNAH2	146754	bcgsc.ca	37	17	7636547	7636547	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	125	8	114	0	1	1	0	0	0
CHD3	1107	bcgsc.ca	37	17	7804299	7804299	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	116	7	114	1	1	1	0	0	0
CHD3	1107	bcgsc.ca	37	17	7809192	7809192	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	198	9	203	3	21	21	0	0	0
DNAH9	1770	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	11520831	11520831	+	Silent	SNP	G	G	C	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	60	17	73	0	1	1	0	0	0
DNAH9	1770	ucsc.edu	37	17	11833360	11833360	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	41	4	33	0	0	0	0	0	0
TVP23C	201158	ucsc.edu	37	17	15457087	15457087	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	432	76	441	70	23	5	18	0	0
ATPAF2	91647	bcgsc.ca	37	17	17925109	17925109	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	247	11	212	2	88	88	0	0	0
MYO15A	51168	ucsc.edu	37	17	18065965	18065965	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	33	4	53	1	1	1	0	0	0
MFAP4	4239	bcgsc.ca	37	17	19287974	19287974	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	184	14	157	3	4	4	0	0	0
GPR179	440435	bcgsc.ca	37	17	36485304	36485304	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	219	10	206	1	0	0	0	0	0
IGFBP4	3487	bcgsc.ca	37	17	38610271	38610271	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	166	10	169	1	1508	1506	0	1	1
CCR7	1236	ucsc.edu	37	17	38711674	38711674	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	42	5	39	0	0	0	0	0	0
KRTAP4-7	100132476	ucsc.edu	37	17	39240627	39240627	+	Missense_Mutation	SNP	T	T	C	rs189343211		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	99	16	83	6	0	0	0	0	0
SPATA20	64847	ucsc.edu	37	17	48628369	48628369	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	38	4	41	0	0	0	0	0	0
SCN4A	6329	ucsc.edu	37	17	62022168	62022168	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	29	4	36	0	0	0	0	0	0
RGS9	8787	ucsc.edu	37	17	63193332	63193332	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	26	4	32	0	4	4	0	0	0
OTOP3	347741	ucsc.edu	37	17	72943301	72943301	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	60	7	44	0	0	0	0	0	0
CASKIN2	57513	ucsc.edu	37	17	73500373	73500373	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	21	4	15	0	13	13	0	0	0
TK1	7083	ucsc.edu	37	17	76170984	76170984	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	28	4	32	0	105	105	0	0	0
FASN	2194	ucsc.edu;bcgsc.ca	37	17	80038773	80038773	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	50	8	21	0	38	38	0	0	0
ENOSF1	55556	ucsc.edu	37	18	675343	675343	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	43	4	60	0	196	196	0	0	0
DLGAP1	9229	bcgsc.ca	37	18	3582121	3582121	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	203	9	205	0	9	9	0	0	0
RALBP1	10928	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	9535719	9535719	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	18	10	29	0	22	12	10	0	0
PPP4R1	9989	ucsc.edu	37	18	9584798	9584798	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	36	4	32	0	12	12	0	0	0
MPPE1	65258	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	11887001	11887001	+	Missense_Mutation	SNP	G	G	A	rs202109190		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	71	33	63	0	40	20	20	0	0
POLI	11201	ucsc.edu	37	18	51809359	51809359	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	37	4	28	0	26	26	0	0	0
MIER2	54531	bcgsc.ca	37	19	327183	327183	+	Missense_Mutation	SNP	G	G	T	rs201881025	byfrequency;alternate_allele	TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	255	10	242	4	8	8	0	0	0
TLE2	7089	ucsc.edu	37	19	3006496	3006496	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	31	5	32	0	10	10	0	0	0
AES	166	ucsc.edu	37	19	3054173	3054173	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	27	4	42	0	543	543	0	0	0
RAX2	84839	ucsc.edu	37	19	3771701	3771701	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	40	4	25	0	0	0	0	0	0
SAFB2	9667	ucsc.edu	37	19	5610039	5610039	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	41	4	41	0	44	44	0	0	0
EVI5L	115704	bcgsc.ca	37	19	7914168	7914168	+	Silent	SNP	G	G	T	rs199695438	alternate_allele	TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	84	9	96	0	9	9	0	0	0
MAP2K7	5609	ucsc.edu	37	19	7975638	7975638	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	17	4	15	0	21	21	0	0	0
CD320	51293	ucsc.edu	37	19	8367841	8367841	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	34	4	40	0	132	132	0	0	0
ADAMTS10	81794	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	8661946	8661946	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	98	39	108	0	7	3	4	0	0
OR7D2	162998	bcgsc.ca	37	19	9297304	9297304	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	116	9	123	0	5	5	0	0	0
EPOR	2057	ucsc.edu	37	19	11489145	11489145	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	83	8	58	0	16	16	0	0	0
CACNA1A	773	ucsc.edu	37	19	13386683	13386683	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	41	4	32	0	0	0	0	0	0
CLEC17A	388512	ucsc.edu	37	19	14707703	14707703	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	19	4	19	0	0	0	0	0	0
CPAMD8	27151	ucsc.edu	37	19	17012097	17012097	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	36	4	32	0	0	0	0	0	0
JAK3	3718	ucsc.edu	37	19	17950463	17950463	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	35	4	39	0	0	0	0	0	0
UPF1	5976	ucsc.edu	37	19	18966851	18966851	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	34	4	34	0	33	33	0	0	0
RPSAP58	388524	ucsc.edu	37	19	23990633	23990633	+	RNA	SNP	C	C	A	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	40	4	50	0	0	0	0	0	0
MLL4	8085	ucsc.edu	37	19	36214829	36214829	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	40	5	37	0	5	5	0	0	0
SPINT2	10653	ucsc.edu	37	19	38780898	38780898	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	36	4	40	1	1720	1717	1	2	0
SPTBN4	57731	bcgsc.ca	37	19	41008716	41008716	+	Missense_Mutation	SNP	G	G	T	rs151234878	alternate_allele	TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	125	7	142	1	1	1	0	0	0
SHKBP1	92799	ucsc.edu	37	19	41095050	41095050	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	37	4	39	0	57	57	0	0	0
CEACAM5	1048	ucsc.edu	37	19	42212675	42212675	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	24	4	23	0	0	0	0	0	0
PSG9	5678	bcgsc.ca	37	19	43763144	43763144	+	Missense_Mutation	SNP	C	C	A	rs2355447	byfrequency;alternate_allele	TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	436	15	437	4	0	0	0	0	0
ZNF404	342908	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	44377748	44377748	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	151	60	174	0	0	0	0	0	0
CCDC9	26093	ucsc.edu	37	19	47773701	47773701	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	42	5	69	0	0	0	0	0	0
CRX	1406	bcgsc.ca	37	19	48343161	48343161	+	Silent	SNP	C	C	A	rs201875881	alternate_allele	TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	191	10	188	0	0	0	0	0	0
RUVBL2	10856	bcgsc.ca	37	19	49502595	49502595	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	143	9	108	2	159	159	0	0	0
NAPSB	256236	ucsc.edu	37	19	50837608	50837608	+	RNA	SNP	C	C	A	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	30	4	29	0	13	13	0	0	0
NR1H2	7376	ucsc.edu	37	19	50881688	50881688	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	41	4	26	0	2	2	0	0	0
ZNF578	147660	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	53014896	53014896	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	153	10	149	0	36	36	0	0	0
ZNF415	55786	bcgsc.ca	37	19	53612856	53612856	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	113	9	129	0	9	9	0	0	0
LENG8	114823	ucsc.edu	37	19	54965699	54965699	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	36	5	38	0	65	65	0	0	0
LILRB1	10859	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	19	55144747	55144747	+	Missense_Mutation	SNP	C	C	A	rs200928068	alternate_allele	TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	155	54	133	1	2	2	0	0	0
SUV420H2	84787	ucsc.edu	37	19	55855191	55855191	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	36	4	30	0	13	13	0	0	0
ZNF628	89887	ucsc.edu	37	19	55992871	55992871	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	34	5	41	0	13	13	0	0	0
PEG3	5178	bcgsc.ca	37	19	57327836	57327836	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	199	11	208	0	0	0	0	0	0
DUXA	503835	bcgsc.ca	37	19	57669826	57669826	+	Missense_Mutation	SNP	C	C	A	rs146886967	byfrequency;alternate_allele	TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	79	7	76	0	0	0	0	0	0
TPO	7173	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	1488542	1488542	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	73	8	53	0	0	0	0	0	0
LPIN1	23175	bcgsc.ca	37	2	11944575	11944575	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	93	7	78	1	1	1	0	0	0
PPM1B	5495	bcgsc.ca	37	2	44428534	44428534	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	194	8	161	2	26	26	0	0	0
MEIS1	4211	ucsc.edu	37	2	66665008	66665008	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	25	4	29	0	2	2	0	0	0
TIA1	7072	bcgsc.ca	37	2	70444051	70444051	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	446	15	458	3	57	57	0	0	0
ATP6V1B1	525	ucsc.edu	37	2	71188149	71188149	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	13	4	11	0	1	1	0	0	0
DYSF	8291	bcgsc.ca	37	2	71747338	71747338	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	196	9	215	1	0	0	0	0	0
EIF2AK3	9451	bcgsc.ca	37	2	88857311	88857311	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	336	13	325	1	29	29	0	0	0
ANKRD20A8P	729171	broad.mit.edu	37	2	95522772	95522772	+	RNA	SNP	T	T	C	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	82	5	95	0	4	4	0	0	0
LOC442028	0	bcgsc.ca	37	2	95558238	95558238	+	RNA	SNP	T	T	C	rs79213344		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	45	13	48	2	0	0	0	0	0
ACTR1B	10120	ucsc.edu	37	2	98274942	98274942	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	51	5	36	0	72	72	0	0	0
LRP1B	53353	bcgsc.ca	37	2	141259268	141259268	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	132	10	127	1	0	0	0	0	0
ABCB11	8647	bcgsc.ca	37	2	169781287	169781287	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	126	8	137	2	0	0	0	0	0
METAP1D	254042	bcgsc.ca	37	2	172930426	172930426	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	102	7	82	1	4	4	0	0	0
DLX1	1745	bcgsc.ca	37	2	172950598	172950598	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	153	8	174	0	0	0	0	0	0
TTN	7273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	179443931	179443931	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	199	45	204	0	1	1	0	0	0
CWC22	57703	ucsc.edu	37	2	180835413	180835413	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	53	5	56	0	16	16	0	0	0
ITGA4	3676	ucsc.edu	37	2	182322941	182322941	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	32	4	26	0	1	1	0	0	0
ALS2CR8	79800	ucsc.edu	37	2	203839087	203839087	+	Silent	SNP	C	C	A	rs78815956	alternate_allele	TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	42	4	55	0	1	1	0	0	0
GPR1	2825	bcgsc.ca	37	2	207041108	207041108	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	143	9	154	0	0	0	0	0	0
ZNF142	7701	ucsc.edu	37	2	219505489	219505489	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	43	4	57	0	0	0	0	0	0
FAM134A	79137	bcgsc.ca	37	2	220047260	220047260	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	88	7	105	0	200	199	0	0	1
ASIC4	55515	ucsc.edu	37	2	220379885	220379885	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	43	4	46	0	0	0	0	0	0
KCNE4	23704	bcgsc.ca	37	2	223917609	223917609	+	Missense_Mutation	SNP	C	C	A	rs139841729	alternate_allele	TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	145	9	127	0	1	1	0	0	0
WDFY1	57590	bcgsc.ca	37	2	224760261	224760261	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	140	8	105	1	25	25	0	0	0
ECEL1	9427	ucsc.edu	37	2	233345475	233345475	+	Silent	SNP	G	G	T	rs142112011	byfrequency;alternate_allele	TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	36	4	39	0	0	0	0	0	0
IQCA1	79781	ucsc.edu	37	2	237300923	237300923	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	23	4	27	0	9	9	0	0	0
ATG4B	23192	ucsc.edu	37	2	242607957	242607957	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	24	4	33	0	1	1	0	0	0
SDCBP2	27111	ucsc.edu;bcgsc.ca	37	20	1294055	1294055	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	24	5	18	0	2	2	0	0	0
TGM6	343641	ucsc.edu	37	20	2398041	2398041	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	44	4	43	0	0	0	0	0	0
CENPB	1059	bcgsc.ca	37	20	3765361	3765361	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	111	7	102	1	289	288	0	0	1
ISM1	140862	ucsc.edu	37	20	13273071	13273071	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	27	4	18	0	0	0	0	0	0
HCK	3055	ucsc.edu	37	20	30671801	30671801	+	Silent	SNP	C	C	A	rs144393224	byfrequency;alternate_allele	TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	59	6	62	1	20	20	0	0	0
CHD6	84181	hgsc.bcm.edu	37	20	40053940	40053940	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	77	4	88	0	8	8	0	0	0
PABPC1L	80336	bcgsc.ca	37	20	43559155	43559155	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	296	13	293	4	0	0	0	0	0
RAB22A	57403	ucsc.edu	37	20	56929245	56929245	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	38	4	43	0	24	24	0	0	0
DIDO1	11083	bcgsc.ca	37	20	61525222	61525222	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	89	7	100	0	9	9	0	0	0
COL20A1	57642	ucsc.edu	37	20	61941126	61941126	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	15	4	16	0	0	0	0	0	0
SRMS	6725	ucsc.edu	37	20	62173540	62173540	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	64	6	83	0	0	0	0	0	0
HELZ2	85441	ucsc.edu	37	20	62195535	62195535	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	32	4	26	0	0	0	0	0	0
TMPRSS15	5651	ucsc.edu	37	21	19756050	19756050	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	40	4	46	0	0	0	0	0	0
GRIK1	2897	ucsc.edu	37	21	30959888	30959888	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	51	6	49	0	0	0	0	0	0
C21orf59	56683	ucsc.edu	37	21	33976444	33976444	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	52	5	68	0	0	0	0	0	0
PWP2	5822	ucsc.edu	37	21	45548466	45548466	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	36	4	47	0	70	69	0	0	1
ADARB1	104	ucsc.edu	37	21	46642066	46642066	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	40	4	45	0	5	5	0	0	0
P2RX6	9127	bcgsc.ca	37	22	21369573	21369573	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	417	13	332	2	0	0	0	0	0
VPREB1	7441	bcgsc.ca	37	22	22599565	22599565	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	82	7	117	1	0	0	0	0	0
POM121L9P	29774	ucsc.edu	37	22	24659735	24659735	+	RNA	SNP	G	G	T	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	21	5	14	0	0	0	0	0	0
ASPHD2	57168	ucsc.edu	37	22	26830061	26830061	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	40	4	44	0	4	4	0	0	0
MN1	4330	ucsc.edu	37	22	28193501	28193501	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	43	4	72	1	0	0	0	0	0
SMTN	6525	bcgsc.ca	37	22	31484510	31484510	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	132	8	202	2	0	0	0	0	0
LIMK2	3985	ucsc.edu	37	22	31655209	31655209	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	49	6	82	0	0	0	0	0	0
FOXRED2	80020	ucsc.edu	37	22	36902252	36902252	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	39	4	61	1	0	0	0	0	0
TMPRSS6	164656	ucsc.edu	37	22	37470684	37470684	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	34	4	40	0	1	1	0	0	0
CARD10	29775	ucsc.edu	37	22	37888546	37888546	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	44	4	100	0	0	0	0	0	0
APOBEC3C	27350	bcgsc.ca	37	22	39411696	39411696	+	Silent	SNP	C	C	A	rs201957439	alternate_allele	TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	101	7	139	2	26	26	0	0	0
NFAM1	150372	ucsc.edu	37	22	42805548	42805548	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	38	4	50	0	0	0	0	0	0
RRP7A	27341	ucsc.edu	37	22	42912130	42912130	+	Missense_Mutation	SNP	G	G	T	rs3207606	alternate_allele	TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	47	5	82	0	1	1	0	0	0
SETD5	55209	ucsc.edu	37	3	9515101	9515101	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	52	6	29	0	48	48	0	0	0
BRPF1	7862	bcgsc.ca	37	3	9775999	9775999	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	142	8	154	2	5	5	0	0	0
DYNC1LI1	51143	bcgsc.ca	37	3	32587346	32587346	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	112	8	106	0	0	0	0	0	0
SCN11A	11280	ucsc.edu	37	3	38889214	38889214	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	40	4	38	0	1	1	0	0	0
SCAP	22937	ucsc.edu	37	3	47465524	47465524	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	43	4	55	1	1	1	0	0	0
PLXNB1	5364	ucsc.edu	37	3	48447207	48447207	+	Splice_Site	SNP	T	T	C	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	55	1	45	0	3	3	0	0	0
COL7A1	1294	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	48602253	48602253	+	Silent	SNP	G	G	A	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	56	26	55	0	0	0	0	0	0
DAG1	1605	ucsc.edu	37	3	49569619	49569619	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	41	4	25	0	58	58	0	0	0
DAG1	1605	ucsc.edu	37	3	49570579	49570579	+	Missense_Mutation	SNP	C	C	A	rs147831615	alternate_allele	TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	41	4	46	0	51	51	0	0	0
RBM15B	29890	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	51431021	51431021	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	104	10	126	0	62	55	7	0	0
PDE12	201626	ucsc.edu;bcgsc.ca	37	3	57542202	57542202	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	46	6	35	0	4	4	0	0	0
ACOX2	8309	bcgsc.ca	37	3	58514622	58514622	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	138	9	121	0	20	20	0	0	0
WDR52	55779	hgsc.bcm.edu;bcgsc.ca	37	3	113128125	113128125	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	136	7	141	0	0	0	0	0	0
TM4SF18	116441	ucsc.edu	37	3	149042713	149042713	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	61	6	88	0	178	178	0	0	0
DHX36	170506	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	154006708	154006708	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	49	14	45	0	20	11	9	0	0
ZNF639	51193	ucsc.edu;bcgsc.ca	37	3	179051264	179051264	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	63	6	58	0	34	34	0	0	0
ECE2	9718	ucsc.edu	37	3	183994313	183994313	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	36	4	39	0	0	0	0	0	0
SDHAP1	255812	broad.mit.edu	37	3	195698262	195698262	+	RNA	SNP	C	C	G	rs78216694	bycluster	TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	110	7	86	1	34	22	12	0	0
PCYT1A	5130	bcgsc.ca	37	3	195968962	195968962	+	Splice_Site	SNP	C	C	A	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	154	9	128	1	3	3	0	0	0
WDR53	348793	bcgsc.ca	37	3	196287867	196287867	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	116	8	128	0	0	0	0	0	0
PCGF3	10336	ucsc.edu	37	4	728769	728769	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	42	4	38	0	7	7	0	0	0
TMEM175	84286	bcgsc.ca	37	4	951626	951626	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	117	10	128	1	74	74	0	0	0
UVSSA	57654	ucsc.edu	37	4	1348576	1348576	+	Missense_Mutation	SNP	C	C	A	rs143509490	byfrequency;alternate_allele	TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	43	4	23	0	9	9	0	0	0
TAPT1-AS1	202020	ucsc.edu	37	4	16258063	16258063	+	RNA	SNP	G	G	A	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	64	1	58	0	7	2	5	0	0
LDB2	9079	bcgsc.ca	37	4	16597383	16597383	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	146	8	151	0	3	3	0	0	0
TBC1D19	55296	bcgsc.ca	37	4	26719573	26719573	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	141	8	152	2	4	4	0	0	0
NFXL1	152518	ucsc.edu	37	4	47877311	47877311	+	Splice_Site	SNP	C	C	A	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	30	4	39	0	0	0	0	0	0
UGT2A1	10941	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	70513331	70513331	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	45	13	40	0	0	0	0	0	0
SLC4A4	8671	bcgsc.ca	37	4	72412140	72412140	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	171	8	158	0	23	23	0	0	0
C4orf26	152816	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	76489342	76489342	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	106	48	114	0	0	0	0	0	0
MMRN1	22915	bcgsc.ca	37	4	90849065	90849065	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	195	10	180	3	0	0	0	0	0
SMARCA5	8467	bcgsc.ca	37	4	144460070	144460070	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	184	10	156	0	33	33	0	0	0
FGA	2243	bcgsc.ca	37	4	155506864	155506864	+	Missense_Mutation	SNP	G	G	T	rs121909613	alternate_allele	TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	115	7	107	1	0	0	0	0	0
FNIP2	57600	ucsc.edu	37	4	159750319	159750319	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	42	4	36	0	0	0	0	0	0
RAPGEF2	9693	ucsc.edu	37	4	160277299	160277299	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	38	4	46	0	1	1	0	0	0
UGT3A2	167127	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	36035804	36035804	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	61	23	64	0	0	0	0	0	0
LIFR	3977	bcgsc.ca	37	5	38523583	38523583	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	137	8	125	0	1	1	0	0	0
ISL1	3670	ucsc.edu	37	5	50683396	50683396	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	43	4	40	0	0	0	0	0	0
DDX4	54514	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	55088515	55088515	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	63	27	78	0	0	0	0	0	0
MAP3K1	4214	ucsc.edu	37	5	56155558	56155558	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	40	4	25	0	8	8	0	0	0
HMGCR	3156	ucsc.edu	37	5	74656135	74656135	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	40	4	37	0	22	22	0	0	0
COL4A3BP	10087	ucsc.edu	37	5	74695138	74695138	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	53	5	48	0	0	0	0	0	0
ACSL6	23305	ucsc.edu	37	5	131307302	131307302	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	32	4	54	0	0	0	0	0	0
SLC22A4	6583	bcgsc.ca	37	5	131671676	131671676	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	114	8	106	0	1	1	0	0	0
PCDHGB7	56099	broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	140798706	140798706	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	51	6	66	0	12	12	0	0	0
DIAPH1	1729	bcgsc.ca	37	5	140908022	140908022	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	71	6	76	0	0	0	0	0	0
PDE6A	5145	bcgsc.ca	37	5	149276321	149276321	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	261	14	211	4	0	0	0	0	0
CD74	972	hgsc.bcm.edu	37	5	149792194	149792194	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	131	9	129	1	0	0	0	0	0
KIF4B	285643	bcgsc.ca	37	5	154393910	154393910	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	302	12	281	4	0	0	0	0	0
FAM193B	54540	ucsc.edu	37	5	176963359	176963359	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	37	4	31	0	0	0	0	0	0
RIOK1	83732	ucsc.edu	37	6	7393514	7393514	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	75	7	125	1	3	3	0	0	0
TBC1D7	51256	ucsc.edu	37	6	13325336	13325336	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	39	4	77	1	0	0	0	0	0
C6orf15	29113	ucsc.edu	37	6	31079510	31079510	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	28	4	43	0	0	0	0	0	0
CSNK2B	1460	ucsc.edu	37	6	31636944	31636944	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	43	4	83	0	8	8	0	0	0
EHMT2	10919	ucsc.edu	37	6	31855951	31855951	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	28	5	56	1	18	18	0	0	0
TNXB	7148	ucsc.edu	37	6	32021269	32021269	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	41	4	63	1	0	0	0	0	0
COL11A2	1302	ucsc.edu	37	6	33137173	33137173	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	21	4	50	0	0	0	0	0	0
VPS52	6293	ucsc.edu;bcgsc.ca	37	6	33236282	33236282	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	44	6	82	0	0	0	0	0	0
TAPBP	6892	ucsc.edu	37	6	33272967	33272967	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	45	4	100	0	80	80	0	0	0
DNAH8	1769	ucsc.edu	37	6	38783426	38783426	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	18	4	14	0	0	0	0	0	0
GLTSCR1L	23506	ucsc.edu;bcgsc.ca	37	6	42797546	42797546	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	74	7	131	2	4	4	0	0	0
RHAG	6005	ucsc.edu	37	6	49583445	49583445	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	53	5	74	0	0	0	0	0	0
FBXO9	26268	ucsc.edu	37	6	52935895	52935895	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	12	4	12	0	17	17	0	0	0
FBXO9	26268	ucsc.edu	37	6	52957568	52957568	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	28	4	74	1	19	19	0	0	0
USP45	85015	ucsc.edu	37	6	99891470	99891470	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	33	4	57	0	2	2	0	0	0
USP45	85015	ucsc.edu	37	6	99924030	99924030	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	49	5	77	0	0	0	0	0	0
C6orf170	221322	ucsc.edu	37	6	121604999	121604999	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	42	4	48	0	1	1	0	0	0
PLAGL1	5325	ucsc.edu	37	6	144269139	144269139	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	40	4	62	0	10	10	0	0	0
EPM2A	7957	ucsc.edu	37	6	146007355	146007355	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	42	4	68	0	1	1	0	0	0
STXBP5	134957	ucsc.edu	37	6	147637450	147637450	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	44	4	52	0	1	1	0	0	0
SASH1	23328	ucsc.edu	37	6	148852696	148852696	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	42	5	77	0	3	3	0	0	0
SYNE1	23345	ucsc.edu	37	6	152730720	152730720	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	36	4	65	0	0	0	0	0	0
TTLL2	83887	ucsc.edu	37	6	167753888	167753888	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	39	4	64	0	0	0	0	0	0
PDGFA	5154	bcgsc.ca	37	7	552054	552054	+	Missense_Mutation	SNP	C	C	A	rs144981584	byfrequency;alternate_allele	TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	96	8	102	0	80	80	0	0	0
ZDHHC4	55146	ucsc.edu	37	7	6623052	6623052	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	44	4	42	0	1	1	0	0	0
AEBP1	165	ucsc.edu	37	7	44149813	44149813	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	41	4	54	1	0	0	0	0	0
IKZF1	10320	ucsc.edu	37	7	50468168	50468168	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	34	4	36	0	1	1	0	0	0
LOC493754	0	ucsc.edu;bcgsc.ca	37	7	66041925	66041925	+	RNA	SNP	C	C	G	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	55	18	53	0	1	1	0	0	0
CCL26	10344	broad.mit.edu	37	7	75401236	75401236	+	Silent	SNP	G	G	C	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	108	3	105	0	0	0	0	0	0
TMEM120A	83862	broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	75616533	75616533	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	17	8	28	0	452	224	228	0	0
PION	54103	ucsc.edu	37	7	76953038	76953038	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	37	4	47	0	1	1	0	0	0
AKAP9	10142	ucsc.edu	37	7	91712707	91712707	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	47	5	49	0	5	5	0	0	0
LMTK2	22853	bcgsc.ca	37	7	97822767	97822767	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	180	8	198	2	7	7	0	0	0
COL26A1	136227	ucsc.edu	37	7	101188736	101188736	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	31	4	21	0	0	0	0	0	0
PIK3CG	5294	ucsc.edu	37	7	106508431	106508431	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	41	4	29	0	0	0	0	0	0
COG5	10466	ucsc.edu	37	7	107194748	107194748	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	42	4	47	0	6	6	0	0	0
TES	26136	bcgsc.ca	37	7	115892463	115892463	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	195	11	183	0	57	57	0	0	0
RBM28	55131	ucsc.edu	37	7	127958126	127958126	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	43	4	46	0	18	18	0	0	0
TNPO3	23534	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	128641219	128641219	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	328	120	348	0	5	5	0	0	0
CHCHD3	54927	bcgsc.ca	37	7	132659971	132659971	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	118	9	101	0	190	190	0	0	0
TBXAS1	6916	bcgsc.ca	37	7	139661774	139661774	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	79	7	83	1	24	24	0	0	0
REPIN1	29803	ucsc.edu	37	7	150070004	150070004	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	36	4	47	0	108	108	0	0	0
LOC100132707	0	ucsc.edu	37	7	154738322	154738322	+	RNA	SNP	C	C	A	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	43	4	37	0	8	8	0	0	0
LMBR1	64327	ucsc.edu	37	7	156619401	156619401	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	38	4	54	0	13	13	0	0	0
MTUS1	57509	bcgsc.ca	37	8	17541993	17541993	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	522	17	515	4	1	1	0	0	0
ELP3	55140	ucsc.edu;bcgsc.ca	37	8	28017948	28017948	+	Missense_Mutation	SNP	G	G	T	rs144555248	alternate_allele	TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	59	6	72	0	35	35	0	0	0
FGFR1	2260	ucsc.edu	37	8	38314874	38314874	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	51	5	63	0	1	1	0	0	0
KIAA1429	25962	bcgsc.ca	37	8	95502251	95502251	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	181	10	85	0	106	106	0	0	0
VPS13B	157680	ucsc.edu	37	8	100874008	100874008	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	35	4	14	0	1	1	0	0	0
ATP6V1C1	528	bcgsc.ca	37	8	104066208	104066208	+	Silent	SNP	C	C	A	rs200461621	alternate_allele	TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	176	9	93	1	0	0	0	0	0
OPLAH	26873	hgsc.bcm.edu	37	8	145113903	145113903	+	Missense_Mutation	SNP	C	C	G	rs111254751		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	24	10	6	0	90	53	37	0	0
LRRC24	441381	ucsc.edu	37	8	145748568	145748568	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	37	4	14	0	78	78	0	0	0
KDM4C	23081	ucsc.edu	37	9	7013853	7013853	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	42	4	93	0	9	9	0	0	0
DENND4C	55667	bcgsc.ca	37	9	19346753	19346753	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	109	8	164	1	3	3	0	0	0
PIGO	84720	ucsc.edu	37	9	35092407	35092407	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	53	5	112	0	5	5	0	0	0
ARHGEF39	84904	ucsc.edu	37	9	35664819	35664819	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	33	4	57	0	0	0	0	0	0
PGM5	5239	ucsc.edu	37	9	71006552	71006552	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	76	6	137	2	3	3	0	0	0
PCSK5	5125	ucsc.edu	37	9	78804077	78804077	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	34	4	76	0	0	0	0	0	0
IDNK	414328	ucsc.edu;bcgsc.ca	37	9	86258507	86258507	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	59	6	78	0	17	17	0	0	0
KIF27	55582	bcgsc.ca	37	9	86518589	86518589	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	90	7	156	1	0	0	0	0	0
PTPN3	5774	ucsc.edu	37	9	112151518	112151518	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	40	5	53	0	2	2	0	0	0
PAPPA	5069	ucsc.edu;bcgsc.ca	37	9	118950481	118950481	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	39	5	41	0	0	0	0	0	0
CNTRL	11064	ucsc.edu	37	9	123898149	123898149	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	52	5	108	1	1	1	0	0	0
GAPVD1	26130	ucsc.edu;bcgsc.ca	37	9	128067396	128067396	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	68	7	83	1	1	1	0	0	0
STXBP1	6812	ucsc.edu	37	9	130438188	130438188	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	30	4	36	0	6	6	0	0	0
PIP5KL1	138429	ucsc.edu	37	9	130687540	130687540	+	Splice_Site	SNP	C	C	A	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	24	4	41	0	0	0	0	0	0
TBC1D13	54662	ucsc.edu	37	9	131554787	131554787	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	24	4	38	0	8	8	0	0	0
PRRC2B	84726	ucsc.edu	37	9	134353201	134353201	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	22	4	38	0	10	10	0	0	0
DDX31	64794	ucsc.edu	37	9	135517392	135517392	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	39	4	63	0	0	0	0	0	0
ADAMTS13	11093	ucsc.edu	37	9	136305532	136305532	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	28	5	53	0	2	2	0	0	0
RXRA	6256	bcgsc.ca	37	9	137293514	137293514	+	Missense_Mutation	SNP	C	C	A	rs55836231	byfrequency;alternate_allele	TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	71	6	125	0	3	3	0	0	0
SOHLH1	402381	ucsc.edu	37	9	138589380	138589380	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	32	4	40	0	0	0	0	0	0
KCNT1	57582	ucsc.edu	37	9	138656940	138656940	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	38	6	69	1	0	0	0	0	0
NOTCH1	4851	ucsc.edu	37	9	139391477	139391477	+	Silent	SNP	G	G	T	rs201499253	alternate_allele	TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	19	4	33	0	5	5	0	0	0
LCN10	414332	ucsc.edu	37	9	139635320	139635320	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	42	4	59	0	1	1	0	0	0
NSMF	26012	ucsc.edu	37	9	140349727	140349727	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	50	5	108	1	26	26	0	0	0
CACNA1B	774	ucsc.edu	37	9	140846828	140846828	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	32	4	68	0	0	0	0	0	0
AKAP17A	8227	broad.mit.edu	37	X	1720241	1720241	+	Silent	SNP	C	C	T	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	22	7	8	0	35	16	19	0	0
ARSD	414	ucsc.edu	37	X	2828012	2828012	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	49	5	46	0	3	3	0	0	0
MXRA5	25878	bcgsc.ca	37	X	3229400	3229400	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	125	7	94	1	6	6	0	0	0
HDHD1	8226	ucsc.edu	37	X	6968485	6968485	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	38	4	51	0	26	26	0	0	0
KAL1	3730	ucsc.edu	37	X	8504897	8504897	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	37	4	50	0	0	0	0	0	0
TBL1X	6907	ucsc.edu	37	X	9677782	9677782	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	41	4	39	0	11	11	0	0	0
TLR7	51284	bcgsc.ca	37	X	12906221	12906221	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	191	10	264	4	0	0	0	0	0
BMX	660	ucsc.edu	37	X	15527456	15527456	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	49	5	49	0	0	0	0	0	0
SCML2	10389	bcgsc.ca	37	X	18342038	18342038	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	176	10	186	0	0	0	0	0	0
FAM47B	170062	ucsc.edu	37	X	34961005	34961005	+	Silent	SNP	C	C	A	rs189542319		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	42	4	29	0	0	0	0	0	0
PRRG1	5638	broad.mit.edu	37	X	37312814	37312814	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	73	3	57	0	3	3	0	0	0
MED12	9968	ucsc.edu	37	X	70346948	70346948	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	43	4	43	0	6	6	0	0	0
RPS4X	6191	ucsc.edu	37	X	71497043	71497043	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	36	4	51	0	0	0	0	0	0
TBX22	50945	bcgsc.ca	37	X	79283564	79283564	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	91	6	78	0	0	0	0	0	0
DOCK11	139818	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	117707873	117707873	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	150	71	144	1	14	2	12	0	0
BCORL1	63035	bcgsc.ca	37	X	129148239	129148239	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	292	13	303	3	1	1	0	0	0
FRMD7	90167	bcgsc.ca	37	X	131219610	131219610	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	203	9	238	2	0	0	0	0	0
FRMD7	90167	bcgsc.ca	37	X	131231309	131231309	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	393	17	318	5	0	0	0	0	0
ZNF185	7739	bcgsc.ca	37	X	152085712	152085712	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	143	8	131	0	0	0	0	0	0
TARBP2	6895	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	53895924	53895925	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	67	25	67	0	0	0	0	0	0
ALPK3	57538	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	15	85400008	85400009	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	51	26	48	0	0	0	0	0	0
PHF20L1	51105	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	133836263	133836264	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-BQ-7056-01A-11D-1961-08	TCGA-BQ-7056-11A-01D-1961-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8030657c-5a4c-49c4-a1c4-87344411c96f	5f202358-ec0a-45aa-b346-79d9e4f5b268	390	206	177	0	0	0	0	0	0
