Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	TTotCov	TVarCov	NTotCov	NVarCov	Trna_tot	Trna_ref	Trna_var	Trna_alt1	Trna_alt2
KLHL17	339451	ucsc.edu	37	1	898246	898246	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	44	4	54	0	4	4	0	0	0
PEX10	5192	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	2340282	2340282	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	58	14	54	0	33	17	16	0	0
PRDM16	63976	ucsc.edu	37	1	3313075	3313075	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	22	5	26	0	0	0	0	0	0
AJAP1	55966	ucsc.edu	37	1	4832568	4832568	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	40	5	50	0	14	14	0	0	0
CAMTA1	23261	ucsc.edu	37	1	7721865	7721865	+	Silent	SNP	C	C	A	rs139873665	alternate_allele	TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	41	4	53	0	1	1	0	0	0
PER3	8863	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	7887456	7887456	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	112	28	162	0	13	10	3	0	0
SLC2A5	6518	ucsc.edu	37	1	9097966	9097966	+	Missense_Mutation	SNP	G	G	T	rs147771907	byfrequency;alternate_allele	TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	47	5	52	0	0	0	0	0	0
UBE4B	10277	ucsc.edu;bcgsc.ca	37	1	10166408	10166408	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	84	8	138	0	3	3	0	0	0
CASZ1	54897	ucsc.edu	37	1	10716744	10716744	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	34	4	25	0	9	9	0	0	0
LOC440563	0	bcgsc.ca	37	1	13183598	13183598	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	118	8	105	0	0	0	0	0	0
CELA2A	63036	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	15793929	15793929	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	66	8	82	0	0	0	0	0	0
CLCNKB	1188	broad.mit.edu	37	1	16378296	16378296	+	Silent	SNP	A	A	C	rs199755248		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	99	5	116	0	7	7	0	0	0
PADI3	51702	bcgsc.ca	37	1	17599881	17599881	+	Missense_Mutation	SNP	C	C	A	rs187733966	alternate_allele	TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	85	7	84	0	0	0	0	0	0
CNKSR1	10256	ucsc.edu	37	1	26515115	26515115	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	29	4	60	0	2	2	0	0	0
PUM1	9698	ucsc.edu	37	1	31447596	31447596	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	45	5	44	0	28	28	0	0	0
YARS	8565	bcgsc.ca	37	1	33246690	33246690	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	177	8	180	0	64	64	0	0	0
CSMD2	114784	ucsc.edu	37	1	34070907	34070907	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	39	4	75	0	0	0	0	0	0
TEKT2	27285	ucsc.edu	37	1	36551577	36551577	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	34	4	24	0	1	1	0	0	0
THRAP3	9967	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	36767245	36767245	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	78	21	75	0	0	0	0	0	0
MANEAL	149175	bcgsc.ca	37	1	38265264	38265264	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	249	11	196	0	1	1	0	0	0
CLDN19	149461	ucsc.edu	37	1	43204157	43204157	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	58	6	71	0	0	0	0	0	0
ALG6	29929	bcgsc.ca	37	1	63879782	63879782	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	160	9	106	0	18	18	0	0	0
NEGR1	257194	ucsc.edu	37	1	72058648	72058648	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	52	5	40	0	0	0	0	0	0
TTLL7	79739	ucsc.edu	37	1	84417640	84417640	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	63	6	42	0	1	1	0	0	0
ATXN7L2	127002	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	110034064	110034064	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	52	20	85	0	5	3	2	0	0
MAB21L3	126868	ucsc.edu	37	1	116670926	116670926	+	Missense_Mutation	SNP	G	G	T	rs141751886	alternate_allele	TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	42	4	37	0	1	1	0	0	0
SPAG17	200162	ucsc.edu;bcgsc.ca	37	1	118550779	118550779	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	53	7	62	0	1	1	0	0	0
RPRD2	23248	ucsc.edu	37	1	150443117	150443117	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	38	4	44	0	36	36	0	0	0
PRUNE	58497	bcgsc.ca	37	1	150990360	150990360	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	129	8	119	0	38	38	0	0	0
RORC	6097	ucsc.edu	37	1	151786055	151786055	+	Silent	SNP	G	G	T	rs191835080	alternate_allele	TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	42	4	54	0	30	30	0	0	0
RORC	6097	ucsc.edu	37	1	151787781	151787781	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	48	6	56	0	31	31	0	0	0
INTS3	65123	ucsc.edu	37	1	153723580	153723580	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	34	4	34	0	0	0	0	0	0
C1orf43	25912	bcgsc.ca	37	1	154192856	154192856	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	132	7	150	0	482	481	1	0	0
ADAR	103	bcgsc.ca	37	1	154574615	154574615	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	251	10	252	0	41	41	0	0	0
INSRR	3645	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	156811976	156811976	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	41	12	58	0	0	0	0	0	0
INSRR	3645	ucsc.edu	37	1	156816362	156816362	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	38	4	55	0	0	0	0	0	0
ARHGEF11	9826	ucsc.edu	37	1	156933097	156933097	+	Splice_Site	SNP	C	C	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	31	4	46	0	0	0	0	0	0
DCAF8	50717	ucsc.edu	37	1	160208483	160208483	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	34	4	26	0	83	83	0	0	0
TOMM40L	84134	ucsc.edu	37	1	161196309	161196309	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	41	4	50	0	9	9	0	0	0
PRRC2C	23215	ucsc.edu	37	1	171544065	171544065	+	Splice_Site	SNP	G	G	T	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	33	4	31	0	0	0	0	0	0
RABGAP1L	9910	ucsc.edu	37	1	174274264	174274264	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	38	4	49	0	0	0	0	0	0
RASAL2	9462	bcgsc.ca	37	1	178412265	178412265	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	87	7	97	0	8	8	0	0	0
TOR1AIP1	26092	ucsc.edu	37	1	179870437	179870437	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	32	4	43	0	0	0	0	0	0
CACNA1E	777	ucsc.edu	37	1	181750613	181750613	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	23	4	20	0	0	0	0	0	0
C1orf21	81563	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	184476745	184476745	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	85	17	45	0	26	25	1	0	0
TRMT1L	81627	bcgsc.ca	37	1	185114686	185114686	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	121	9	63	0	12	12	0	0	0
KIF21B	23046	bcgsc.ca	37	1	200965457	200965457	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	241	13	244	0	2	2	0	0	0
SOX13	9580	ucsc.edu	37	1	204091059	204091059	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	39	4	43	0	9	9	0	0	0
PLEKHA6	22874	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	204198070	204198070	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	187	49	163	0	0	0	0	0	0
CR2	1380	ucsc.edu;bcgsc.ca	37	1	207649730	207649730	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	65	9	57	0	0	0	0	0	0
USH2A	7399	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	216019211	216019211	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	68	13	81	0	0	0	0	0	0
GPATCH2	55105	bcgsc.ca	37	1	217604562	217604562	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	242	11	224	0	0	0	0	0	0
TP53BP2	7159	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	223984099	223984099	+	Silent	SNP	A	A	G	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	228	52	208	0	75	40	35	0	0
IBA57	200205	ucsc.edu	37	1	228362718	228362718	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	37	4	57	0	0	0	0	0	0
ARV1	64801	ucsc.edu;bcgsc.ca	37	1	231114978	231114978	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	72	7	69	0	14	14	0	0	0
PCNXL2	80003	ucsc.edu;bcgsc.ca	37	1	233134113	233134113	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	75	8	84	0	2	2	0	0	0
NID1	4811	ucsc.edu	37	1	236187505	236187505	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	47	5	56	0	0	0	0	0	0
RYR2	6262	ucsc.edu	37	1	237889592	237889592	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	29	4	19	0	0	0	0	0	0
FMN2	56776	bcgsc.ca	37	1	240635688	240635688	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	122	8	118	0	0	0	0	0	0
ADSS	159	ucsc.edu	37	1	244587344	244587344	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	43	4	56	0	40	40	0	0	0
DNAJC1	64215	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	22171214	22171214	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	77	16	66	0	0	0	0	0	0
ZNF485	220992	bcgsc.ca	37	10	44104135	44104135	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	67	6	72	0	4	4	0	0	0
JMJD1C	221037	bcgsc.ca	37	10	64957287	64957287	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	119	7	85	0	15	15	0	0	0
C10orf35	219738	ucsc.edu	37	10	71391521	71391521	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	32	4	37	0	24	24	0	0	0
MICU1	10367	ucsc.edu	37	10	74267973	74267973	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	21	4	12	0	56	56	0	0	0
FAM22A	728118	ucsc.edu	37	10	88994230	88994230	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	31	5	42	0	0	0	0	0	0
PAPSS2	9060	ucsc.edu	37	10	89474836	89474836	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	38	4	46	0	17	17	0	0	0
PDLIM1	9124	ucsc.edu	37	10	96997834	96997834	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	24	4	34	0	302	302	0	0	0
PIK3AP1	118788	bcgsc.ca	37	10	98386589	98386589	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	137	8	121	0	88	88	0	0	0
ANKRD2	26287	ucsc.edu	37	10	99338146	99338146	+	Silent	SNP	C	C	A	rs148585391	alternate_allele	TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	44	5	43	0	0	0	0	0	0
SLC25A28	81894	bcgsc.ca	37	10	101371081	101371081	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	105	7	125	0	54	53	1	0	0
MGEA5	10724	bcgsc.ca	37	10	103559016	103559016	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	335	14	313	1	78	78	0	0	0
SLK	9748	bcgsc.ca	37	10	105785454	105785454	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	78	7	70	0	41	41	0	0	0
WDR96	80217	ucsc.edu	37	10	105905299	105905299	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	41	4	32	0	1	1	0	0	0
CCDC147	159686	ucsc.edu	37	10	106130692	106130692	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	53	5	28	0	0	0	0	0	0
MKI67	4288	bcgsc.ca	37	10	129913721	129913721	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	123	8	114	0	0	0	0	0	0
LRRC27	80313	ucsc.edu	37	10	134166438	134166438	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	52	5	43	0	2	2	0	0	0
PHRF1	57661	ucsc.edu	37	11	608874	608874	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	46	4	55	0	41	41	0	0	0
MUC6	4588	ucsc.edu	37	11	1029135	1029135	+	Nonsense_Mutation	SNP	C	C	A	rs59763899	byfrequency;alternate_allele	TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	25	4	40	0	0	0	0	0	0
MUC2	4583	ucsc.edu	37	11	1083243	1083243	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	51	5	65	0	0	0	0	0	0
IGF2	3481	ucsc.edu	37	11	2154793	2154793	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	38	4	57	0	1	1	0	0	0
DNHD1	144132	bcgsc.ca	37	11	6519453	6519453	+	Missense_Mutation	SNP	C	C	A	rs200418410	alternate_allele	TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	266	11	266	0	1	1	0	0	0
OVCH2	341277	ucsc.edu	37	11	7712537	7712537	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	34	4	43	0	0	0	0	0	0
PTH	5741	ucsc.edu	37	11	13514329	13514329	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	39	4	23	0	0	0	0	0	0
OR4B1	119765	bcgsc.ca	37	11	48238454	48238454	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	178	8	173	0	0	0	0	0	0
FOLH1	2346	ucsc.edu	37	11	49186294	49186294	+	Missense_Mutation	SNP	G	G	T	rs139716793	alternate_allele	TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	31	4	30	0	3	3	0	0	0
OR5D16	390144	bcgsc.ca	37	11	55606581	55606581	+	Silent	SNP	G	G	T	rs139231893	byfrequency;alternate_allele	TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	229	11	182	0	0	0	0	0	0
PRPF19	27339	ucsc.edu	37	11	60670302	60670302	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	41	5	36	0	103	103	0	0	0
CD6	923	ucsc.edu	37	11	60776258	60776258	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	37	4	39	0	8	8	0	0	0
FADS2	9415	bcgsc.ca	37	11	61615705	61615705	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	130	8	112	0	17	17	0	0	0
HNRNPUL2	221092	ucsc.edu	37	11	62494158	62494158	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	42	4	45	0	79	79	0	0	0
SLC22A6	9356	bcgsc.ca	37	11	62744647	62744647	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	146	10	175	0	3	3	0	0	0
PYGM	5837	bcgsc.ca	37	11	64521741	64521741	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	106	7	137	0	0	0	0	0	0
ATG2A	23130	broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	64679328	64679328	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	37	10	38	0	20	11	9	0	0
DPP3	10072	bcgsc.ca	37	11	66258775	66258775	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	141	9	166	0	44	44	0	0	0
BBS1	582	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	66282135	66282135	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	127	25	151	1	91	47	44	0	0
BBS1	582	ucsc.edu	37	11	66291248	66291248	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	41	4	50	0	77	76	0	1	0
CLCF1	23529	ucsc.edu	37	11	67135097	67135097	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	28	4	48	0	2	2	0	0	0
UCP2	7351	ucsc.edu	37	11	73689134	73689134	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	37	4	44	0	1	1	0	0	0
RNU6-83	100873782	bcgsc.ca	37	11	77784249	77784249	+	RNA	SNP	C	C	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	34	8	41	0	0	0	0	0	0
RAB30	27314	bcgsc.ca	37	11	82705165	82705165	+	Splice_Site	SNP	C	C	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	143	10	101	0	0	0	0	0	0
MAML2	84441	hgsc.bcm.edu	37	11	95825431	95825431	+	Silent	SNP	T	T	C	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	11	3	11	2	21	21	0	0	0
CNTN5	53942	bcgsc.ca	37	11	99715955	99715955	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	221	11	184	0	0	0	0	0	0
TMEM133	83935	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	100863392	100863392	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	153	28	177	0	21	10	11	0	0
DYNC2H1	79659	ucsc.edu	37	11	102985939	102985939	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	35	4	42	0	1	1	0	0	0
SCN4B	6330	bcgsc.ca	37	11	118015806	118015806	+	Missense_Mutation	SNP	C	C	A	rs147332112	alternate_allele	TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	259	9	302	1	0	0	0	0	0
PHLDB1	23187	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	118516164	118516164	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	92	27	143	0	0	0	0	0	0
PHLDB1	23187	hgsc.bcm.edu;bcgsc.ca	37	11	118516166	118516166	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	90	26	152	0	22	22	0	0	0
PHLDB1	23187	hgsc.bcm.edu	37	11	118516168	118516168	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	90	19	152	0	0	0	0	0	0
FOXR1	283150	bcgsc.ca	37	11	118849785	118849785	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	187	10	197	0	0	0	0	0	0
GRIK4	2900	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	120745883	120745883	+	Silent	SNP	C	C	T	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	136	24	111	0	0	0	0	0	0
SIAE	54414	bcgsc.ca	37	11	124508598	124508598	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	83	6	72	0	202	202	0	0	0
ROBO4	54538	ucsc.edu	37	11	124763782	124763782	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	38	4	30	0	2	2	0	0	0
CDON	50937	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	125880565	125880565	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	75	18	87	0	2	1	1	0	0
GLB1L3	112937	ucsc.edu	37	11	134183843	134183843	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	43	5	22	0	0	0	0	0	0
CACNA2D4	93589	bcgsc.ca	37	12	1904889	1904889	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	216	11	229	0	6	6	0	0	0
CACNA1C	775	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	2716231	2716231	+	Silent	SNP	C	C	T	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	45	12	50	2	2	2	0	0	0
CCND2	894	ucsc.edu;bcgsc.ca	37	12	4383269	4383269	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	41	11	38	0	100	69	30	0	1
VWF	7450	bcgsc.ca	37	12	6076765	6076765	+	Missense_Mutation	SNP	C	C	A	rs142316324	byfrequency;alternate_allele	TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	172	8	183	0	0	0	0	0	0
SLC2A14	144195	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	7982586	7982586	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	81	16	63	0	31	31	0	0	0
A2ML1	144568	bcgsc.ca	37	12	8975820	8975820	+	Silent	SNP	C	C	A	rs201185025	alternate_allele	TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	153	9	153	0	0	0	0	0	0
DDX12P	440081	broad.mit.edu	37	12	9574020	9574020	+	RNA	SNP	T	T	C	rs200847155		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	151	4	114	0	21	2	19	0	0
CLEC1B	51266	bcgsc.ca	37	12	10149581	10149581	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	126	10	106	0	0	0	0	0	0
DDX47	51202	ucsc.edu	37	12	12966386	12966386	+	Missense_Mutation	SNP	C	C	A	rs114712240	byfrequency;alternate_allele	TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	21	4	13	0	0	0	0	0	0
RPL13AP20	387841	ucsc.edu	37	12	13029018	13029018	+	RNA	SNP	C	C	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	34	4	20	0	0	0	0	0	0
PIK3C2G	5288	ucsc.edu	37	12	18466971	18466971	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	18	4	13	0	0	0	0	0	0
PIK3C2G	5288	bcgsc.ca	37	12	18534801	18534801	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	138	8	120	0	0	0	0	0	0
ITPR2	3709	bcgsc.ca	37	12	26639154	26639154	+	Silent	SNP	C	C	A	rs111760835	alternate_allele	TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	236	10	156	0	14	14	0	0	0
C12orf40	283461	ucsc.edu	37	12	40037600	40037600	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	51	5	47	0	0	0	0	0	0
SLC38A1	81539	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	46633478	46633478	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	171	33	88	0	20	15	5	0	0
SPATS2	65244	ucsc.edu	37	12	49854819	49854819	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	50	5	31	0	0	0	0	0	0
GPD1	2819	ucsc.edu	37	12	50500139	50500139	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	60	6	52	0	119	119	0	0	0
KRT71	112802	bcgsc.ca	37	12	52946835	52946835	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	163	9	138	0	0	0	0	0	0
MAP3K12	7786	bcgsc.ca	37	12	53877794	53877794	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	179	8	179	0	0	0	0	0	0
ATF7	11016	ucsc.edu	37	12	53937186	53937186	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	23	4	16	0	15	15	0	0	0
STAT2	6773	bcgsc.ca	37	12	56749081	56749081	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	222	9	196	0	52	52	0	0	0
BAZ2A	11176	bcgsc.ca	37	12	57000052	57000052	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	133	9	62	0	41	41	0	0	0
ARHGAP9	64333	bcgsc.ca	37	12	57872486	57872486	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	134	9	116	0	2	2	0	0	0
KIF5A	3798	ucsc.edu	37	12	57965859	57965859	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	42	6	51	0	0	0	0	0	0
ALX1	8092	bcgsc.ca	37	12	85695061	85695061	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	142	9	150	1	0	0	0	0	0
VEZT	55591	ucsc.edu	37	12	95663826	95663826	+	Splice_Site	SNP	G	G	T	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	42	4	21	0	0	0	0	0	0
VPS29	51699	bcgsc.ca	37	12	110933886	110933886	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	82	7	72	0	110	110	0	0	0
TCTN1	79600	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	111070319	111070319	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	244	52	182	1	117	78	39	0	0
ATXN2	6311	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	111908459	111908459	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	179	63	149	0	38	17	21	0	0
RPH3A	22895	bcgsc.ca	37	12	113327859	113327859	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	410	13	261	0	0	0	0	0	0
DDX54	79039	bcgsc.ca	37	12	113599084	113599084	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	104	7	96	1	1	1	0	0	0
NOS1	4842	bcgsc.ca	37	12	117660636	117660636	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	164	8	131	1	0	0	0	0	0
ABCB9	23457	bcgsc.ca	37	12	123430645	123430645	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	105	7	70	0	10	10	0	0	0
SBNO1	55206	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	123806180	123806180	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	218	90	132	0	14	5	9	0	0
SLC15A4	121260	bcgsc.ca	37	12	129278836	129278836	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	149	9	126	0	44	44	0	0	0
IFT88	8100	bcgsc.ca	37	13	21219048	21219048	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	215	11	195	0	6	6	0	0	0
FRY	10129	bcgsc.ca	37	13	32805437	32805437	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	139	9	96	0	0	0	0	0	0
N4BP2L2	10443	ucsc.edu	37	13	33018106	33018106	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	18	4	19	0	7	7	0	0	0
FREM2	341640	bcgsc.ca	37	13	39448722	39448722	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	144	8	127	1	0	0	0	0	0
DGKH	160851	bcgsc.ca	37	13	42742874	42742874	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	186	11	196	1	0	0	0	0	0
NUFIP1	26747	ucsc.edu	37	13	45563561	45563561	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	40	4	50	0	6	6	0	0	0
KPNA3	3839	bcgsc.ca	37	13	50296164	50296164	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	119	7	90	0	21	21	0	0	0
CKAP2	26586	ucsc.edu	37	13	53035078	53035078	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	35	4	41	0	8	8	0	0	0
DCT	1638	ucsc.edu	37	13	95097984	95097984	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	15	4	12	0	0	0	0	0	0
CARKD	55739	ucsc.edu	37	13	111289509	111289509	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	41	4	51	1	55	55	0	0	0
TMEM255B	348013	bcgsc.ca	37	13	114507918	114507918	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	114	7	137	0	14	13	0	1	0
RASA3	22821	ucsc.edu	37	13	114762015	114762015	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	53	5	58	0	0	0	0	0	0
RNASE13	440163	bcgsc.ca	37	14	21502030	21502030	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	221	10	221	2	0	0	0	0	0
ZNF219	51222	ucsc.edu	37	14	21561430	21561430	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	39	4	41	0	33	33	0	0	0
RPGRIP1	57096	bcgsc.ca	37	14	21792934	21792934	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	127	8	157	0	0	0	0	0	0
SALL2	6297	bcgsc.ca	37	14	21992674	21992674	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	90	7	109	1	9	9	0	0	0
ACIN1	22985	bcgsc.ca	37	14	23564455	23564455	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	230	11	249	0	0	0	0	0	0
MYH6	4624	bcgsc.ca	37	14	23876446	23876446	+	Splice_Site	SNP	C	C	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	102	8	96	0	0	0	0	0	0
NFATC4	4776	ucsc.edu	37	14	24843556	24843556	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	45	6	35	0	13	13	0	0	0
PPP2R3C	55012	bcgsc.ca	37	14	35576533	35576533	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	223	13	178	0	17	17	0	0	0
SLC35F4	341880	ucsc.edu	37	14	58030879	58030879	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	38	4	59	0	0	0	0	0	0
ARID4A	5926	bcgsc.ca	37	14	58832862	58832862	+	Missense_Mutation	SNP	C	C	A	rs201425263	alternate_allele	TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	318	11	263	1	7	7	0	0	0
GPR135	64582	ucsc.edu	37	14	59930912	59930912	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	30	4	41	0	1	1	0	0	0
MTHFD1	4522	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	64915025	64915025	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	59	12	43	0	9	3	6	0	0
MAX	4149	bcgsc.ca	37	14	65560523	65560523	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	125	8	106	0	0	0	0	0	0
ARG2	384	bcgsc.ca	37	14	68087637	68087637	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	113	7	77	0	43	42	0	1	0
GALNT16	57452	bcgsc.ca	37	14	69787575	69787575	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	97	6	75	0	0	0	0	0	0
TMEM63C	57156	ucsc.edu	37	14	77706024	77706024	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	32	4	40	0	0	0	0	0	0
NOXRED1	122945	ucsc.edu	37	14	77872446	77872446	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	42	4	41	0	0	0	0	0	0
STON2	85439	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	81744521	81744521	+	Silent	SNP	G	G	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	129	29	131	1	7	5	2	0	0
ATG2B	55102	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	96784101	96784101	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	189	35	134	0	7	5	2	0	0
EVL	51466	ucsc.edu;bcgsc.ca	37	14	100551047	100551047	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	63	6	88	0	26	26	0	0	0
HSP90AA1	3320	ucsc.edu	37	14	102551701	102551701	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	41	4	36	0	313	313	0	0	0
AKT1	207	ucsc.edu	37	14	105239223	105239223	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	24	4	22	0	0	0	0	0	0
AHNAK2	113146	ucsc.edu	37	14	105405035	105405035	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	32	5	37	0	194	194	0	0	0
AHNAK2	113146	bcgsc.ca	37	14	105406036	105406036	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	368	13	449	1	172	171	0	1	0
C14orf79	122616	ucsc.edu	37	14	105452790	105452790	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	42	4	42	0	17	17	0	0	0
MTA1	9112	ucsc.edu	37	14	105920548	105920548	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	40	4	48	0	13	13	0	0	0
CYFIP1	23191	ucsc.edu	37	15	22999550	22999550	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	35	4	33	0	329	328	1	0	0
HERC2P2	400322	ucsc.edu	37	15	23283331	23283331	+	RNA	SNP	C	C	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	41	4	43	0	5	5	0	0	0
HERC2	8924	ucsc.edu	37	15	28511071	28511071	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	51	5	78	0	6	6	0	0	0
RPAP1	26015	ucsc.edu	37	15	41814440	41814440	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	38	5	44	0	0	0	0	0	0
PLA2G4F	255189	ucsc.edu	37	15	42446597	42446597	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	45	4	62	0	0	0	0	0	0
GANC	2595	ucsc.edu	37	15	42566682	42566682	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	36	5	30	0	7	7	0	0	0
UBR1	197131	bcgsc.ca	37	15	43352292	43352292	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	253	10	230	1	5	5	0	0	0
SPG11	80208	bcgsc.ca	37	15	44900700	44900700	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	81	7	67	0	40	40	0	0	0
GATM	2628	ucsc.edu	37	15	45656995	45656995	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	60	6	45	0	1	1	0	0	0
BLOC1S6	26258	ucsc.edu	37	15	45884350	45884350	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	52	5	45	0	19	19	0	0	0
SLC12A1	6557	ucsc.edu	37	15	48561880	48561880	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	49	5	56	0	1	1	0	0	0
WDR72	256764	bcgsc.ca	37	15	53889439	53889439	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	204	10	170	0	72	72	0	0	0
UNC13C	440279	ucsc.edu	37	15	54307326	54307326	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	32	4	41	0	0	0	0	0	0
ZNF609	23060	bcgsc.ca	37	15	64915131	64915131	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	141	9	172	0	4	4	0	0	0
DIS3L	115752	bcgsc.ca	37	15	66618189	66618189	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	277	12	174	0	12	12	0	0	0
SCAPER	49855	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	15	77087751	77087751	+	Silent	SNP	A	A	T	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	83	20	76	1	3	3	0	0	0
TBC1D2B	23102	bcgsc.ca	37	15	78305495	78305495	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	106	8	106	0	21	20	1	0	0
ADAMTS7	11173	ucsc.edu	37	15	79056063	79056063	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	34	4	47	0	3	3	0	0	0
TMED3	23423	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	79606106	79606106	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	51	8	42	0	0	0	0	0	0
POLG	5428	ucsc.edu	37	15	89862563	89862563	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	38	4	61	0	26	26	0	0	0
IDH2	3418	bcgsc.ca	37	15	90633852	90633852	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	119	8	101	0	205	205	0	0	0
ZNF774	342132	ucsc.edu	37	15	90897952	90897952	+	Silent	SNP	C	C	A	rs8023776	byfrequency;alternate_allele	TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	43	5	41	0	1	1	0	0	0
MEF2A	4205	ucsc.edu	37	15	100230542	100230542	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	41	4	42	0	42	42	0	0	0
LRRK1	79705	ucsc.edu	37	15	101593521	101593521	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	41	4	50	0	18	18	0	0	0
PDIA2	64714	ucsc.edu	37	16	334563	334563	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	50	5	75	0	0	0	0	0	0
C16orf13	84326	bcgsc.ca	37	16	684561	684561	+	Silent	SNP	G	G	T	rs200097008	alternate_allele	TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	193	9	223	3	79	79	0	0	0
TRAF7	84231	ucsc.edu	37	16	2222308	2222308	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	34	4	61	0	59	59	0	0	0
TBC1D24	57465	ucsc.edu	37	16	2550819	2550819	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	31	4	22	0	14	14	0	0	0
TBC1D24	57465	ucsc.edu	37	16	2550899	2550899	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	53	5	81	0	8	8	0	0	0
SRRM2	23524	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	2808492	2808492	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	274	50	268	0	48	31	17	0	0
NMRAL1	57407	ucsc.edu	37	16	4524103	4524103	+	Nonsense_Mutation	SNP	C	C	A	rs149317402	byfrequency;alternate_allele	TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	40	4	47	0	0	0	0	0	0
SNX29	92017	bcgsc.ca	37	16	12145940	12145940	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	218	11	199	0	53	53	0	0	0
PDXDC1	23042	hgsc.bcm.edu;bcgsc.ca	37	16	15126763	15126763	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	120	7	141	1	111	111	0	0	0
USP31	57478	bcgsc.ca	37	16	23091348	23091348	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	93	7	95	0	8	8	0	0	0
KIAA0556	23247	bcgsc.ca	37	16	27751863	27751863	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	135	9	173	0	9	9	0	0	0
CLN3	1201	ucsc.edu	37	16	28498808	28498808	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	42	4	51	0	90	90	0	0	0
CD19	930	ucsc.edu	37	16	28948401	28948401	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	29	4	38	0	1	1	0	0	0
SRCAP	10847	broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	30750805	30750805	+	Missense_Mutation	SNP	T	T	A	rs142948420	byfrequency;alternate_allele	TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	40	6	40	0	81	48	32	0	1
FBXL19	54620	ucsc.edu	37	16	30939936	30939936	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	20	4	22	0	0	0	0	0	0
HEATR3	55027	bcgsc.ca	37	16	50112873	50112889	+	Frame_Shift_Del	DEL	GGAATTTCTCATAAAAG	GGAATTTCTCATAAAAG	-	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	GGAATTTCTCATAAAAG	GGAATTTCTCATAAAAG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	72	6	68	0	0	0	0	0	0
PAPD5	64282	bcgsc.ca	37	16	50258809	50258809	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	215	13	207	0	0	0	0	0	0
CCDC102A	92922	bcgsc.ca	37	16	57552110	57552110	+	Missense_Mutation	SNP	C	C	A	rs201369504	alternate_allele	TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	263	11	325	1	12	12	0	0	0
EXOC3L1	283849	bcgsc.ca	37	16	67220750	67220750	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	116	9	115	0	0	0	0	0	0
ELMO3	79767	broad.mit.edu;bcgsc.ca	37	16	67233265	67233265	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	86	15	80	0	8	0	8	0	0
AARS	16	bcgsc.ca	37	16	70292936	70292936	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	233	12	236	1	95	95	0	0	0
SF3B3	23450	bcgsc.ca	37	16	70590234	70590234	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	179	11	198	0	0	0	0	0	0
HYDIN	54768	ucsc.edu	37	16	70884521	70884521	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	55	6	78	0	1	1	0	0	0
ZNF23	7571	bcgsc.ca	37	16	71483580	71483580	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	222	10	217	0	4	4	0	0	0
DHX38	9785	hgsc.bcm.edu	37	16	72138441	72138441	+	Silent	SNP	G	G	T	rs199994362	alternate_allele	TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	128	7	114	0	20	20	0	0	0
KARS	3735	ucsc.edu	37	16	75664400	75664400	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	41	4	57	0	0	0	0	0	0
SLC38A8	146167	ucsc.edu	37	16	84070416	84070416	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	44	5	61	0	0	0	0	0	0
TAF1C	9013	ucsc.edu	37	16	84215064	84215064	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	28	4	45	0	8	8	0	0	0
SLC7A5	8140	ucsc.edu	37	16	87902690	87902690	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	50	5	60	0	3	3	0	0	0
ZNF778	197320	bcgsc.ca	37	16	89293358	89293358	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	251	12	251	0	4	4	0	0	0
CPNE7	27132	ucsc.edu;bcgsc.ca	37	16	89661833	89661833	+	Missense_Mutation	SNP	G	G	T	rs74414003	alternate_allele	TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	50	6	56	0	12	12	0	0	0
C16orf55	124045	bcgsc.ca	37	16	89724680	89724680	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	132	7	109	0	6	6	0	0	0
GAS8	2622	ucsc.edu	37	16	90103728	90103728	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	47	5	46	0	49	49	0	0	0
SGSM2	9905	ucsc.edu	37	17	2276784	2276784	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	43	4	66	0	30	30	0	0	0
ARRB2	409	ucsc.edu	37	17	4623543	4623543	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	26	4	40	0	272	272	0	0	0
ZMYND15	84225	ucsc.edu	37	17	4643996	4643996	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	45	4	65	1	7	7	0	0	0
WSCD1	23302	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	6012935	6012935	+	Silent	SNP	C	C	G	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	392	87	483	1	0	0	0	0	0
ALOX12	239	ucsc.edu	37	17	6902037	6902037	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	39	5	68	0	0	0	0	0	0
C17orf61-PLSCR3	0	bcgsc.ca	37	17	7294136	7294136	+	RNA	SNP	G	G	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	84	15	109	0	0	0	0	0	0
FGF11	2256	ucsc.edu	37	17	7345153	7345153	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	61	6	57	0	4	4	0	0	0
POLR2A	5430	ucsc.edu	37	17	7414839	7414839	+	Missense_Mutation	SNP	C	C	T	rs142714917		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	40	4	40	0	110	110	0	0	0
KDM6B	23135	ucsc.edu	37	17	7755471	7755471	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	50	5	73	0	0	0	0	0	0
MYH13	8735	ucsc.edu	37	17	10212678	10212678	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	39	4	41	0	0	0	0	0	0
TVP23C	201158	ucsc.edu	37	17	15457087	15457087	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	397	58	377	53	40	5	35	0	0
FAM27L	284123	broad.mit.edu;bcgsc.ca	37	17	21825491	21825491	+	RNA	SNP	G	G	T	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	100	21	114	1	0	0	0	0	0
ADAP2	55803	ucsc.edu	37	17	29253920	29253920	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	41	4	40	0	41	41	0	0	0
ZNF830	91603	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	33289281	33289281	+	Silent	SNP	T	T	C	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	59	16	63	0	32	18	14	0	0
MRM1	79922	ucsc.edu	37	17	34958667	34958667	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	41	4	66	0	13	13	0	0	0
NR1D1	9572	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	17	38253601	38253601	+	Silent	SNP	A	A	G	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	30	12	47	0	51	23	28	0	0
TOP2A	7153	ucsc.edu	37	17	38546394	38546394	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	33	4	29	0	5	5	0	0	0
LEPREL4	10609	ucsc.edu	37	17	39967205	39967205	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	54	5	48	0	19	19	0	0	0
DHX58	79132	ucsc.edu	37	17	40263501	40263501	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	49	5	55	0	22	22	0	0	0
MLX	6945	bcgsc.ca	37	17	40720508	40720508	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	252	11	236	0	59	59	0	0	0
CNTNAP1	8506	bcgsc.ca	37	17	40839050	40839050	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	109	9	97	0	2	2	0	0	0
PYY	5697	bcgsc.ca	37	17	42030536	42030536	+	Silent	SNP	C	C	A	rs199608462	alternate_allele	TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	106	7	107	0	0	0	0	0	0
NAGS	162417	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	42083544	42083544	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	60	14	82	0	0	0	0	0	0
TMEM101	84336	ucsc.edu	37	17	42090388	42090388	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	39	4	48	0	0	0	0	0	0
GJC1	10052	bcgsc.ca	37	17	42882089	42882089	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	201	9	221	0	0	0	0	0	0
HIGD1B	51751	ucsc.edu	37	17	42927753	42927753	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	53	6	64	0	4	4	0	0	0
KIF18B	146909	ucsc.edu	37	17	43011403	43011403	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	28	4	34	0	1	1	0	0	0
ARHGAP27	201176	ucsc.edu	37	17	43473636	43473636	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	35	4	43	0	37	37	0	0	0
EFCAB13	124989	ucsc.edu	37	17	45492285	45492285	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	41	4	30	0	0	0	0	0	0
SP2	6668	bcgsc.ca	37	17	46002869	46002869	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	202	11	230	0	43	43	0	0	0
CACNA1G	8913	bcgsc.ca	37	17	48667834	48667834	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	104	7	96	0	0	0	0	0	0
C17orf47	284083	ucsc.edu	37	17	56621205	56621205	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	65	6	74	0	0	0	0	0	0
CACNG4	27092	bcgsc.ca	37	17	65026636	65026636	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	183	8	194	1	0	0	0	0	0
CACNG1	786	bcgsc.ca	37	17	65052343	65052343	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	141	7	139	1	0	0	0	0	0
HELZ	9931	bcgsc.ca	37	17	65144799	65144799	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	362	17	365	0	7	7	0	0	0
ABCA6	23460	bcgsc.ca	37	17	67077256	67077256	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	165	10	138	0	3	3	0	0	0
FDXR	2232	bcgsc.ca	37	17	72860157	72860157	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	65	6	96	0	34	34	0	0	0
CASKIN2	57513	ucsc.edu	37	17	73499825	73499825	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	42	4	50	0	17	17	0	0	0
CASKIN2	57513	ucsc.edu	37	17	73501068	73501068	+	Silent	SNP	C	C	A	rs201153486	alternate_allele	TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	42	4	69	1	30	30	0	0	0
FBF1	85302	ucsc.edu	37	17	73922917	73922917	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	41	4	43	0	5	5	0	0	0
RHBDF2	79651	ucsc.edu;bcgsc.ca	37	17	74473803	74473803	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	115	11	156	1	57	57	0	0	0
TMC6	11322	bcgsc.ca	37	17	76113395	76113395	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	143	9	170	2	114	114	0	0	0
TMC8	147138	hgsc.bcm.edu;bcgsc.ca	37	17	76134717	76134717	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	113	8	142	1	6	6	0	0	0
AZI1	22994	ucsc.edu	37	17	79164549	79164549	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	44	5	52	0	12	12	0	0	0
BAHCC1	57597	ucsc.edu	37	17	79405439	79405439	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	35	4	37	0	3	3	0	0	0
FSCN2	25794	ucsc.edu;bcgsc.ca	37	17	79503591	79503591	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	21	6	32	0	0	0	0	0	0
DCXR	51181	broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	79994491	79994491	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	85	16	88	0	143	99	44	0	0
GPS1	2873	ucsc.edu	37	17	80010243	80010243	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	29	4	28	0	4	4	0	0	0
CD7	924	bcgsc.ca	37	17	80274700	80274700	+	Silent	SNP	C	C	A	rs144060245	byfrequency;alternate_allele	TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	112	7	150	0	7	7	0	0	0
FN3K	64122	bcgsc.ca	37	17	80708578	80708578	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	153	8	193	0	47	47	0	0	0
TBCD	6904	bcgsc.ca	37	17	80726374	80726374	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	265	14	277	0	55	55	0	0	0
LRRC30	339291	bcgsc.ca	37	18	7231689	7231689	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	122	9	191	1	0	0	0	0	0
PTPRM	5797	ucsc.edu	37	18	8394607	8394607	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	47	5	72	0	0	0	0	0	0
SOGA2	23255	ucsc.edu	37	18	8825934	8825934	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	52	5	57	0	7	7	0	0	0
GAREM	64762	ucsc.edu	37	18	29850272	29850272	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	24	4	37	0	28	28	0	0	0
ASXL3	80816	ucsc.edu	37	18	31251778	31251778	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	35	4	27	0	1	1	0	0	0
MAPRE2	10982	ucsc.edu	37	18	32712134	32712134	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	40	4	51	0	43	43	0	0	0
ZBTB7C	201501	ucsc.edu	37	18	45556151	45556151	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	41	4	54	0	1	1	0	0	0
MEX3C	51320	bcgsc.ca	37	18	48703550	48703550	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	121	8	175	0	14	14	0	0	0
PHLPP1	23239	ucsc.edu	37	18	60562318	60562318	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	39	4	41	0	6	6	0	0	0
SERPINB8	5271	ucsc.edu;bcgsc.ca	37	18	61650839	61650839	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	84	8	99	1	22	22	0	0	0
MBD3	53615	ucsc.edu	37	19	1578443	1578443	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	64	6	83	0	143	143	0	0	0
SCAMP4	113178	ucsc.edu	37	19	1924169	1924169	+	Silent	SNP	G	G	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	21	3	14	0	67	37	30	0	0
JSRP1	126306	ucsc.edu	37	19	2252930	2252930	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	29	4	36	0	0	0	0	0	0
EBI3	10148	ucsc.edu	37	19	4231297	4231297	+	Silent	SNP	C	C	A	rs142776151	alternate_allele	TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	38	4	36	0	13	13	0	0	0
FSD1	79187	ucsc.edu	37	19	4323574	4323574	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	42	4	40	0	0	0	0	0	0
FEM1A	55527	ucsc.edu	37	19	4792439	4792439	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	17	4	34	0	32	32	0	0	0
KDM4B	23030	ucsc.edu	37	19	5110773	5110773	+	Silent	SNP	C	C	A	rs139508576	alternate_allele	TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	18	4	28	0	15	15	0	0	0
CATSPERD	257062	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	19	5744442	5744442	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	125	16	112	0	0	0	0	0	0
KHSRP	8570	ucsc.edu	37	19	6418004	6418004	+	Silent	SNP	G	G	T	rs199559995	alternate_allele	TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	39	4	54	0	178	178	0	0	0
SLC25A41	284427	ucsc.edu	37	19	6427410	6427410	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	28	4	24	0	1	1	0	0	0
C3	718	bcgsc.ca	37	19	6711075	6711075	+	Missense_Mutation	SNP	C	C	A	rs148820222	alternate_allele	TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	166	8	220	0	2242	2238	3	1	0
EMR4P	326342	ucsc.edu	37	19	6984717	6984717	+	RNA	SNP	C	C	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	41	4	34	0	0	0	0	0	0
PNPLA6	10908	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	7619510	7619510	+	Silent	SNP	G	G	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	127	35	144	1	114	79	34	0	1
XAB2	56949	bcgsc.ca	37	19	7692702	7692702	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	106	9	130	0	20	20	0	0	0
CLEC4M	10332	bcgsc.ca	37	19	7831074	7831074	+	Silent	SNP	C	C	A	rs140297107	alternate_allele	TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	111	7	101	0	0	0	0	0	0
S1PR2	9294	ucsc.edu	37	19	10335255	10335255	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	39	4	44	0	4	4	0	0	0
RAVER1	125950	ucsc.edu	37	19	10439480	10439480	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	48	5	60	0	50	50	0	0	0
KEAP1	9817	ucsc.edu	37	19	10599992	10599992	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	40	4	47	0	91	91	0	0	0
QTRT1	81890	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	10823458	10823458	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	228	44	249	0	63	41	22	0	0
ZNF627	199692	ucsc.edu	37	19	11725675	11725675	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	41	4	43	0	11	11	0	0	0
HOOK2	29911	ucsc.edu	37	19	12876930	12876930	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	45	4	65	0	0	0	0	0	0
NFIX	4784	bcgsc.ca	37	19	13201166	13201166	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	166	10	232	2	90	90	0	0	0
NOTCH3	4854	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	19	15289675	15289675	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	17	5	25	0	10	10	0	0	0
OR10H5	284433	bcgsc.ca	37	19	15904882	15904882	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	235	11	227	1	0	0	0	0	0
UNC13A	23025	ucsc.edu	37	19	17780374	17780374	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	43	4	72	1	0	0	0	0	0
MEF2BNB-MEF2B	4207	ucsc.edu	37	19	19257854	19257854	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	26	4	40	0	0	0	0	0	0
ZNF792	126375	ucsc.edu	37	19	35449645	35449645	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	40	4	59	0	3	3	0	0	0
FAM187B	148109	ucsc.edu;bcgsc.ca	37	19	35715867	35715867	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	58	7	79	0	0	0	0	0	0
WDR62	284403	ucsc.edu	37	19	36593866	36593866	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	37	4	69	1	8	8	0	0	0
ZNF607	84775	bcgsc.ca	37	19	38190089	38190089	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	181	8	186	0	0	0	0	0	0
DPF1	8193	bcgsc.ca	37	19	38708494	38708494	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	136	9	128	0	0	0	0	0	0
PSMD8	5714	ucsc.edu	37	19	38866811	38866811	+	Silent	SNP	G	G	T	rs148287182	byfrequency;alternate_allele	TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	30	4	16	0	1	1	0	0	0
RYR1	6261	ucsc.edu	37	19	38979987	38979987	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	53	5	61	0	1	1	0	0	0
CAPN12	147968	ucsc.edu	37	19	39225462	39225462	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	38	4	38	0	2	2	0	0	0
ECH1	1891	ucsc.edu	37	19	39322404	39322404	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	39	4	48	0	29	29	0	0	0
SARS2	54938	ucsc.edu;bcgsc.ca	37	19	39412274	39412274	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	72	7	86	0	21	21	0	0	0
SUPT5H	6829	bcgsc.ca	37	19	39964647	39964647	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	129	7	137	1	67	67	0	0	0
MAP3K10	4294	ucsc.edu	37	19	40711980	40711980	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	41	4	38	0	16	16	0	0	0
CEACAM5	1048	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	42219580	42219580	+	Missense_Mutation	SNP	G	G	A	rs199857011	alternate_allele	TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	106	30	100	1	0	0	0	0	0
PSG5	5673	bcgsc.ca	37	19	43689023	43689023	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	567	17	609	0	0	0	0	0	0
ZNF180	7733	bcgsc.ca	37	19	45004267	45004267	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	205	10	235	0	0	0	0	0	0
CEACAM20	125931	ucsc.edu;bcgsc.ca	37	19	45017298	45017298	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	71	7	66	0	0	0	0	0	0
APOC4-APOC2	0	bcgsc.ca	37	19	45451807	45451807	+	RNA	SNP	G	G	T	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	116	7	127	0	0	0	0	0	0
OPA3	80207	bcgsc.ca	37	19	46032693	46032693	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	205	9	232	2	5	5	0	0	0
FOXA3	3171	bcgsc.ca	37	19	46375696	46375696	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	198	10	195	1	4	4	0	0	0
ZC3H4	23211	ucsc.edu	37	19	47575641	47575641	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	33	4	37	0	15	15	0	0	0
CARD8	22900	bcgsc.ca	37	19	48737675	48737675	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	124	10	119	0	24	24	0	0	0
GRWD1	83743	bcgsc.ca	37	19	48954339	48954339	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	130	8	130	0	58	58	0	0	0
RASIP1	54922	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	49230414	49230414	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	44	16	58	0	0	0	0	0	0
IL4I1	259307	ucsc.edu	37	19	50397531	50397531	+	Silent	SNP	G	G	C	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	23	4	21	0	0	0	0	0	0
MYH14	79784	ucsc.edu	37	19	50784984	50784984	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	34	4	34	0	27	27	0	0	0
MYBPC2	4606	ucsc.edu	37	19	50936217	50936217	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	28	4	41	0	0	0	0	0	0
GPR32	2854	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	51273914	51273914	+	Silent	SNP	G	G	C	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	45	8	51	0	0	0	0	0	0
PRKCG	5582	ucsc.edu	37	19	54407956	54407956	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	30	4	35	0	0	0	0	0	0
ZNF805	390980	ucsc.edu	37	19	57764973	57764973	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	41	5	43	0	10	10	0	0	0
ZNF416	55659	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	58084258	58084258	+	Silent	SNP	A	A	G	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	75	15	74	0	6	4	2	0	0
NBAS	51594	ucsc.edu	37	2	15536551	15536551	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	41	4	31	0	0	0	0	0	0
GEN1	348654	bcgsc.ca	37	2	17954002	17954002	+	Missense_Mutation	SNP	C	C	A	rs202192107	alternate_allele	TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	79	6	51	0	2	2	0	0	0
CENPO	79172	bcgsc.ca	37	2	25039673	25039673	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	277	10	308	1	0	0	0	0	0
GTF3C2	2976	bcgsc.ca	37	2	27564844	27564844	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	70	6	77	0	53	53	0	0	0
BIRC6	57448	hgsc.bcm.edu	37	2	32655998	32655998	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	86	7	85	0	4	4	0	0	0
ATL2	64225	bcgsc.ca	37	2	38545713	38545713	+	Silent	SNP	C	C	A	rs199804672	alternate_allele	TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	122	8	109	0	21	21	0	0	0
MAP4K3	8491	bcgsc.ca	37	2	39570529	39570529	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	110	8	73	0	0	0	0	0	0
MSH2	4436	ucsc.edu	37	2	47703516	47703516	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	50	5	57	0	0	0	0	0	0
MSH6	2956	bcgsc.ca	37	2	48026289	48026289	+	Silent	SNP	C	C	A	rs1042819		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	83	6	100	0	21	21	0	0	0
TSPYL6	388951	bcgsc.ca	37	2	54483140	54483140	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	144	9	180	0	0	0	0	0	0
SMEK2	57223	broad.mit.edu;ucsc.edu	37	2	55844410	55844410	+	Silent	SNP	C	C	T	rs142775723		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	26	4	25	0	35	28	7	0	0
WDR92	116143	bcgsc.ca	37	2	68358409	68358409	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	147	8	145	0	7	7	0	0	0
SNORA36C	100124535	ucsc.edu;bcgsc.ca	37	2	69747271	69747271	+	RNA	SNP	G	G	T	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	55	7	70	0	0	0	0	0	0
DUSP11	8446	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	74007101	74007101	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	82	24	108	0	19	15	4	0	0
DCTN1	1639	ucsc.edu	37	2	74598811	74598811	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	34	4	30	0	54	54	0	0	0
LRRTM1	347730	ucsc.edu	37	2	80529825	80529825	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	32	4	29	0	0	0	0	0	0
KCMF1	56888	ucsc.edu	37	2	85255011	85255011	+	Splice_Site	SNP	G	G	T	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	32	4	18	0	0	0	0	0	0
TGOLN2	10618	broad.mit.edu;bcgsc.ca	37	2	85549813	85549813	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	37	10	48	0	119	72	47	0	0
IMMT	10989	ucsc.edu	37	2	86386707	86386707	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	53	5	47	0	106	106	0	0	0
ANKRD36	375248	ucsc.edu;bcgsc.ca	37	2	97869931	97869931	+	Missense_Mutation	SNP	A	A	T	rs76309140		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	21	5	19	1	0	0	0	0	0
PLGLA	285189	broad.mit.edu	37	2	107002796	107002796	+	RNA	SNP	C	C	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	297	5	321	0	1	1	0	0	0
LIMS1	3987	bcgsc.ca	37	2	109292357	109292357	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	138	10	124	1	60	60	0	0	0
DPP10	57628	broad.mit.edu	37	2	116572492	116572492	+	Silent	SNP	T	T	C	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	103	3	102	1	0	0	0	0	0
ARHGEF4	50649	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	131801882	131801882	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	23	10	27	0	0	0	0	0	0
NCKAP5	344148	ucsc.edu	37	2	133971351	133971351	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	48	5	32	0	0	0	0	0	0
NEB	4703	ucsc.edu	37	2	152467311	152467311	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	30	4	21	0	0	0	0	0	0
KCNJ3	3760	bcgsc.ca	37	2	155566147	155566147	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	132	10	130	1	2	2	0	0	0
TANC1	85461	bcgsc.ca	37	2	160035592	160035592	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	113	8	139	0	2	2	0	0	0
IFIH1	64135	ucsc.edu	37	2	163138047	163138047	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	35	4	32	0	0	0	0	0	0
RAPGEF4	11069	bcgsc.ca	37	2	173885421	173885421	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	186	8	209	0	2	2	0	0	0
TTN	7273	ucsc.edu	37	2	179479629	179479629	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	23	4	23	0	1	1	0	0	0
TTN	7273	ucsc.edu	37	2	179554306	179554306	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	40	4	19	0	0	0	0	0	0
TTN	7273	ucsc.edu	37	2	179647266	179647266	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	48	5	47	0	0	0	0	0	0
KLF7	8609	bcgsc.ca	37	2	207988748	207988748	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	99	8	110	0	4	4	0	0	0
PIKFYVE	200576	ucsc.edu	37	2	209209895	209209895	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	45	5	45	0	7	7	0	0	0
CXCR2P1	3580	ucsc.edu	37	2	218925643	218925643	+	RNA	SNP	C	C	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	27	4	23	0	3	3	0	0	0
PRKAG3	53632	ucsc.edu	37	2	219696490	219696490	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	22	4	29	0	0	0	0	0	0
IHH	3549	ucsc.edu	37	2	219920551	219920551	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	43	5	43	0	4	4	0	0	0
STK16	8576	ucsc.edu	37	2	220112436	220112436	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	15	4	29	0	82	82	0	0	0
SPHKAP	80309	bcgsc.ca	37	2	228860270	228860270	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	207	11	252	0	0	0	0	0	0
INPP5D	3635	ucsc.edu	37	2	234079761	234079761	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	40	4	35	0	37	37	0	0	0
RBM44	375316	ucsc.edu	37	2	238733059	238733059	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	30	4	33	0	0	0	0	0	0
UBE2F	140739	bcgsc.ca	37	2	238925224	238925224	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	152	10	167	0	45	45	0	0	0
ANKMY1	51281	ucsc.edu	37	2	241492452	241492452	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	44	4	55	0	5	5	0	0	0
DEFB125	245938	bcgsc.ca	37	20	77013	77013	+	Silent	SNP	C	C	A	rs45528036	byfrequency;alternate_allele	TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	287	10	230	0	0	0	0	0	0
SNPH	9751	ucsc.edu	37	20	1281261	1281261	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	42	4	50	0	7	7	0	0	0
SLC4A11	83959	bcgsc.ca	37	20	3214750	3214750	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	115	7	188	0	6	6	0	0	0
C20orf194	25943	ucsc.edu	37	20	3302864	3302864	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	44	4	39	0	0	0	0	0	0
PANK2	80025	bcgsc.ca	37	20	3903937	3903937	+	Missense_Mutation	SNP	C	C	A	rs41279408	alternate_allele	TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	162	9	184	0	49	49	0	0	0
PLCB1	23236	bcgsc.ca	37	20	8639212	8639212	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	140	9	95	0	2	2	0	0	0
CSRP2BP	57325	ucsc.edu	37	20	18143589	18143589	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	42	5	61	0	0	0	0	0	0
FRG1B	284802	bcgsc.ca	37	20	29628225	29628225	+	RNA	SNP	A	A	G	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	159	12	141	3	0	0	0	0	0
NCOA6	23054	bcgsc.ca	37	20	33329158	33329158	+	Silent	SNP	C	C	A	rs142682209	alternate_allele	TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	167	8	176	0	37	37	0	0	0
RBM39	9584	bcgsc.ca	37	20	34312640	34312640	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	77	6	91	0	0	0	0	0	0
ACTR5	79913	ucsc.edu	37	20	37383762	37383762	+	Missense_Mutation	SNP	G	G	T	rs201062646	alternate_allele	TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	40	4	56	0	10	10	0	0	0
SEMG1	6406	ucsc.edu	37	20	43836983	43836983	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	38	4	30	0	0	0	0	0	0
ZNF335	63925	bcgsc.ca	37	20	44586250	44586250	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	57	6	49	0	11	11	0	0	0
ZMYND8	23613	ucsc.edu	37	20	45916028	45916028	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	45	4	36	0	0	0	0	0	0
CSE1L	1434	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	47691344	47691344	+	Silent	SNP	A	A	G	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	58	12	48	0	50	25	25	0	0
SLC17A9	63910	bcgsc.ca	37	20	61588306	61588306	+	Silent	SNP	C	C	A	rs113277747	alternate_allele	TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	76	6	61	0	1	1	0	0	0
LIME1	54923	ucsc.edu	37	20	62369997	62369997	+	Missense_Mutation	SNP	C	C	A	rs1151625	byfrequency;alternate_allele	TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	36	4	50	0	125	125	0	0	0
MYT1	4661	ucsc.edu	37	20	62851173	62851173	+	Silent	SNP	C	C	A	rs144837780	byfrequency;alternate_allele	TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	23	4	47	0	0	0	0	0	0
ANKRD30BP2	149992	broad.mit.edu	37	21	14439357	14439357	+	RNA	SNP	C	C	G	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	11	5	8	0	0	0	0	0	0
MIS18A	54069	ucsc.edu	37	21	33647152	33647152	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	41	4	40	0	0	0	0	0	0
BRWD1	54014	broad.mit.edu;ucsc.edu;bcgsc.ca	37	21	40582820	40582820	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	72	14	55	0	5	2	3	0	0
RRP1	8568	bcgsc.ca	37	21	45217847	45217847	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	99	8	103	0	35	35	0	0	0
PFKL	5211	ucsc.edu	37	21	45746063	45746063	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	26	4	20	0	206	206	0	0	0
DIP2A	23181	ucsc.edu	37	21	47970634	47970634	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	42	4	40	0	16	16	0	0	0
ADORA2A	135	ucsc.edu	37	22	24837183	24837183	+	Missense_Mutation	SNP	G	G	T	rs77186521	alternate_allele	TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	36	4	47	0	3	3	0	0	0
THOC5	8563	bcgsc.ca	37	22	29913073	29913073	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	142	8	183	0	34	34	0	0	0
SF3A1	10291	bcgsc.ca	37	22	30738226	30738226	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	102	8	127	0	189	189	0	0	0
C22orf28	51493	ucsc.edu	37	22	32804230	32804230	+	Splice_Site	SNP	C	C	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	42	4	34	0	0	0	0	0	0
TXN2	25828	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	36876727	36876727	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	117	24	117	0	183	113	70	0	0
TMPRSS6	164656	ucsc.edu	37	22	37467061	37467061	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	35	5	40	0	0	0	0	0	0
TNRC6B	23112	ucsc.edu	37	22	40662963	40662963	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	31	4	42	0	5	5	0	0	0
ACO2	50	bcgsc.ca	37	22	41918981	41918981	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	130	9	133	1	1	1	0	0	0
PLXNB2	23654	ucsc.edu	37	22	50721300	50721300	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	40	4	51	0	0	0	0	0	0
CNTN6	27255	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	1371578	1371578	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	59	14	50	0	42	27	15	0	0
ITPR1	3708	ucsc.edu	37	3	4829776	4829776	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	32	4	26	0	14	14	0	0	0
NUP210	23225	ucsc.edu	37	3	13368885	13368885	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	35	4	36	0	20	20	0	0	0
TMPPE	643853	ucsc.edu	37	3	33134408	33134408	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	38	4	41	0	0	0	0	0	0
SCN10A	6336	bcgsc.ca	37	3	38760180	38760180	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	153	10	149	0	2	2	0	0	0
MYRIP	25924	ucsc.edu	37	3	40192565	40192565	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	30	4	19	0	2	2	0	0	0
PLXNB1	5364	hgsc.bcm.edu	37	3	48456619	48456619	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	54	3	74	0	85	85	0	0	0
CCDC36	339834	ucsc.edu	37	3	49278659	49278659	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	47	6	47	0	0	0	0	0	0
MON1A	84315	ucsc.edu	37	3	49947905	49947905	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	42	4	48	0	10	10	0	0	0
RBM6	10180	bcgsc.ca	37	3	50098946	50098946	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	173	11	161	0	22	22	0	0	0
CACNA2D2	9254	bcgsc.ca	37	3	50413452	50413452	+	Missense_Mutation	SNP	C	C	A	rs141415086	alternate_allele	TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	131	8	165	0	0	0	0	0	0
DOCK3	1795	ucsc.edu	37	3	51352437	51352437	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	37	5	43	0	0	0	0	0	0
RAD54L2	23132	ucsc.edu	37	3	51664746	51664746	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	38	4	38	0	1	1	0	0	0
STAB1	23166	ucsc.edu	37	3	52545696	52545696	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	34	4	25	0	17	17	0	0	0
CHDH	55349	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	3	53857341	53857341	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	17	5	18	0	0	0	0	0	0
ADAMTS9	56999	bcgsc.ca	37	3	64601666	64601666	+	Silent	SNP	C	C	A	rs111661242	alternate_allele	TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	305	13	315	0	16	16	0	0	0
LMOD3	56203	ucsc.edu	37	3	69168049	69168049	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	40	5	58	0	0	0	0	0	0
GBE1	2632	ucsc.edu	37	3	81584371	81584371	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	40	5	39	0	61	61	0	0	0
VGLL3	389136	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	87017993	87017993	+	Silent	SNP	C	C	T	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	78	21	77	1	0	0	0	0	0
DCBLD2	131566	bcgsc.ca	37	3	98518340	98518340	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	277	11	307	1	97	97	0	0	0
SENP7	57337	ucsc.edu	37	3	101046574	101046574	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	61	6	62	0	20	20	0	0	0
ALCAM	214	bcgsc.ca	37	3	105252532	105252532	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	116	8	109	0	0	0	0	0	0
PARP14	54625	broad.mit.edu;ucsc.edu	37	3	122414352	122414352	+	Silent	SNP	G	G	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	25	5	25	0	18	10	8	0	0
SEMA5B	54437	ucsc.edu	37	3	122662340	122662340	+	Missense_Mutation	SNP	C	C	A	rs139012400	alternate_allele	TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	41	4	47	0	11	11	0	0	0
SEMA5B	54437	ucsc.edu	37	3	122667494	122667494	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	43	4	76	0	11	11	0	0	0
UMPS	7372	bcgsc.ca	37	3	124461053	124461053	+	Silent	SNP	C	C	A	rs199644027	alternate_allele	TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	388	13	266	1	42	42	0	0	0
UROC1	131669	bcgsc.ca	37	3	126208213	126208213	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	132	7	135	0	0	0	0	0	0
IFT122	55764	ucsc.edu	37	3	129239025	129239025	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	42	4	39	0	3	3	0	0	0
PIK3R4	30849	bcgsc.ca	37	3	130405107	130405107	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	133	8	107	0	30	30	0	0	0
EPHB1	2047	broad.mit.edu;bcgsc.ca	37	3	134873005	134873005	+	Missense_Mutation	SNP	G	G	A	rs183234182		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	359	18	370	1	0	0	0	0	0
CHST2	9435	ucsc.edu	37	3	142840743	142840743	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	41	4	56	0	11	11	0	0	0
EIF2A	83939	ucsc.edu	37	3	150289856	150289856	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	63	6	68	0	114	114	0	0	0
KPNA4	3840	bcgsc.ca	37	3	160283037	160283037	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	20	5	22	0	24	24	0	0	0
USP13	8975	ucsc.edu	37	3	179439362	179439362	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	39	4	64	1	3	3	0	0	0
CLCN2	1181	ucsc.edu;bcgsc.ca	37	3	184071453	184071453	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	36	8	51	0	0	0	0	0	0
TACC3	10460	bcgsc.ca	37	4	1730367	1730367	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	103	9	109	1	7	7	0	0	0
ADRA2C	152	ucsc.edu	37	4	3768932	3768932	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	32	4	31	0	3	3	0	0	0
OTOP1	133060	bcgsc.ca	37	4	4199765	4199765	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	93	7	86	0	0	0	0	0	0
MAN2B2	23324	bcgsc.ca	37	4	6599999	6599999	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	68	7	84	0	38	38	0	0	0
MAN2B2	23324	ucsc.edu	37	4	6621742	6621742	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	31	4	28	0	55	55	0	0	0
BOD1L1	259282	ucsc.edu	37	4	13590348	13590348	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	41	6	16	0	0	0	0	0	0
PGM2	55276	bcgsc.ca	37	4	37848678	37848678	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	184	9	205	0	43	43	0	0	0
TLR1	7096	broad.mit.edu;bcgsc.ca	37	4	38798114	38798114	+	Missense_Mutation	SNP	A	A	T	rs151285692	alternate_allele	TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	67	7	64	0	24	23	1	0	0
PDS5A	23244	hgsc.bcm.edu;bcgsc.ca	37	4	39978137	39978137	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	140	8	161	1	20	20	0	0	0
SLC30A9	10463	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	42072612	42072612	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	133	43	110	0	66	34	32	0	0
KCTD8	386617	hgsc.bcm.edu	37	4	44449962	44449962	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	3	2	4	1	0	0	0	0	0
TXK	7294	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	48076056	48076056	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	104	18	66	1	0	0	0	0	0
FRYL	285527	ucsc.edu	37	4	48563520	48563520	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	63	6	47	0	7	7	0	0	0
CEP135	9662	ucsc.edu	37	4	56865583	56865583	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	37	4	36	0	0	0	0	0	0
SRP72	6731	ucsc.edu	37	4	57354179	57354179	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	51	5	27	0	0	0	0	0	0
GNRHR	2798	bcgsc.ca	37	4	68610309	68610309	+	Missense_Mutation	SNP	C	C	A	rs182531866	alternate_allele	TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	113	8	114	1	0	0	0	0	0
BMP2K	55589	ucsc.edu	37	4	79832188	79832188	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	33	5	47	0	12	12	0	0	0
WDFY3	23001	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	85781624	85781624	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	156	30	128	0	4	4	0	0	0
MAPK10	5602	bcgsc.ca	37	4	86950380	86950380	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	94	8	71	0	15	15	0	0	0
ATOH1	474	ucsc.edu	37	4	94750879	94750879	+	Missense_Mutation	SNP	C	C	A	rs145666261	alternate_allele	TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	41	4	55	0	0	0	0	0	0
CENPE	1062	broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	104117130	104117130	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	44	8	60	0	0	0	0	0	0
TBCK	93627	ucsc.edu	37	4	107157966	107157966	+	Splice_Site	SNP	C	C	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	40	4	17	0	0	0	0	0	0
ANK2	287	bcgsc.ca	37	4	114257199	114257199	+	Missense_Mutation	SNP	C	C	A	rs148287474	alternate_allele	TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	80	6	98	0	6	6	0	0	0
FAT4	79633	bcgsc.ca	37	4	126411200	126411200	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	284	13	333	1	14	14	0	0	0
NR3C2	4306	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	149357285	149357285	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	149	46	147	0	0	0	0	0	0
FBXW7	55294	bcgsc.ca	37	4	153247366	153247366	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	99	7	104	0	11	11	0	0	0
ENPP6	133121	ucsc.edu	37	4	185039054	185039054	+	Splice_Site	SNP	C	C	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	40	5	38	0	0	0	0	0	0
F11	2160	ucsc.edu	37	4	187196992	187196992	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	34	4	29	0	7	7	0	0	0
KIAA0947	23379	bcgsc.ca	37	5	5457838	5457838	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	444	14	477	0	7	7	0	0	0
KIAA0947	23379	ucsc.edu	37	5	5463051	5463051	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	32	4	24	0	6	6	0	0	0
LOC442132	0	ucsc.edu	37	5	7305194	7305194	+	RNA	SNP	G	G	T	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	31	4	20	0	0	0	0	0	0
SEMA5A	9037	ucsc.edu	37	5	9224846	9224846	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	54	6	56	1	26	26	0	0	0
CTNND2	1501	ucsc.edu	37	5	11384871	11384871	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	44	5	38	0	0	0	0	0	0
MROH2B	133558	bcgsc.ca	37	5	41052628	41052628	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	89	7	99	1	0	0	0	0	0
ITGA2	3673	hgsc.bcm.edu	37	5	52360928	52360928	+	Missense_Mutation	SNP	C	C	A	rs146370217	byfrequency;alternate_allele	TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	95	5	96	0	9	9	0	0	0
RASGRF2	5924	bcgsc.ca	37	5	80422900	80422900	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	103	7	84	0	0	0	0	0	0
RHOBTB3	22836	ucsc.edu	37	5	95067767	95067767	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	46	5	43	0	10	10	0	0	0
MEGF10	84466	bcgsc.ca	37	5	126753366	126753366	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	180	9	176	1	0	0	0	0	0
ADAMTS19	171019	broad.mit.edu	37	5	128983499	128983499	+	Silent	SNP	T	T	C	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	213	8	191	0	0	0	0	0	0
RAD50	10111	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	131976367	131976367	+	Silent	SNP	T	T	C	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	177	36	186	0	0	0	0	0	0
APBB3	10307	bcgsc.ca	37	5	139938231	139938231	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	128	7	169	0	10	10	0	0	0
PCDHA11	56138	ucsc.edu	37	5	140249387	140249387	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	40	5	35	1	11	11	0	0	0
PCDHGA8	9708	ucsc.edu	37	5	140773679	140773679	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	42	4	39	0	0	0	0	0	0
PCDHGA11	56105	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	140802438	140802438	+	Silent	SNP	G	G	C	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	301	52	349	1	1	0	1	0	0
DCTN4	51164	bcgsc.ca	37	5	150121677	150121677	+	Missense_Mutation	SNP	C	C	A	rs202089004	alternate_allele	TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	459	15	363	0	0	0	0	0	0
TENM2	57451	ucsc.edu	37	5	167653109	167653109	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	33	4	39	0	0	0	0	0	0
GABRP	2568	bcgsc.ca	37	5	170236616	170236616	+	Missense_Mutation	SNP	C	C	A	rs79997355	byfrequency;alternate_allele	TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	228	11	218	0	3	3	0	0	0
SLC17A2	10246	bcgsc.ca	37	6	25926018	25926018	+	Missense_Mutation	SNP	C	C	A	rs141137330	alternate_allele	TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	350	12	369	1	3	3	0	0	0
TRIM38	10475	ucsc.edu	37	6	25967000	25967000	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	51	5	55	0	38	38	0	0	0
TRIM38	10475	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	25967011	25967011	+	Silent	SNP	G	G	C	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	54	17	54	0	78	50	28	0	0
OR10C1	442194	bcgsc.ca	37	6	29408020	29408020	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	172	8	185	0	0	0	0	0	0
NFKBIL1	4795	ucsc.edu	37	6	31515489	31515489	+	Silent	SNP	C	C	A	rs202169452	alternate_allele	TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	39	4	45	0	24	24	0	0	0
TNXB	7148	ucsc.edu	37	6	32021356	32021356	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	69	7	97	0	5	5	0	0	0
TNXB	7148	ucsc.edu	37	6	32032747	32032747	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	39	4	47	0	4	4	0	0	0
BTNL2	56244	ucsc.edu	37	6	32370752	32370752	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	35	4	44	0	0	0	0	0	0
ITPR3	3710	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	33644599	33644599	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	67	19	94	0	61	35	26	0	0
ITPR3	3710	ucsc.edu	37	6	33656462	33656462	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	35	4	65	0	102	102	0	0	0
ARMC12	221481	ucsc.edu	37	6	35705048	35705048	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	36	4	44	0	0	0	0	0	0
CPNE5	57699	broad.mit.edu;bcgsc.ca	37	6	36712081	36712081	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	10	6	21	0	1	1	0	0	0
PPP2R5D	5528	ucsc.edu;bcgsc.ca	37	6	42957393	42957393	+	Silent	SNP	G	G	T	rs148177015	alternate_allele	TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	46	6	39	0	11	11	0	0	0
LRRC73	221424	ucsc.edu;bcgsc.ca	37	6	43475194	43475194	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	57	6	88	0	0	0	0	0	0
FBXO9	26268	ucsc.edu	37	6	52941327	52941327	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	27	4	12	0	0	0	0	0	0
OOEP	441161	ucsc.edu	37	6	74079014	74079014	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	43	5	56	0	0	0	0	0	0
DOPEY1	23033	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	83839062	83839062	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	85	16	56	0	5	4	1	0	0
ASF1A	25842	bcgsc.ca	37	6	119222019	119222019	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	266	10	280	0	11	11	0	0	0
SGK1	6446	ucsc.edu;bcgsc.ca	37	6	134493869	134493869	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	69	7	77	0	318	317	0	0	1
SYNE1	23345	bcgsc.ca	37	6	152466677	152466677	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	109	8	104	0	48	48	0	0	0
CNKSR3	154043	ucsc.edu;bcgsc.ca	37	6	154732272	154732272	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	92	9	92	0	0	0	0	0	0
TULP4	56995	bcgsc.ca	37	6	158922941	158922941	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	246	12	284	0	13	13	0	0	0
PNLDC1	154197	ucsc.edu	37	6	160229846	160229846	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	33	4	40	0	0	0	0	0	0
PARK2	5071	bcgsc.ca	37	6	162622209	162622209	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	120	8	109	0	7	7	0	0	0
FAM120B	84498	hgsc.bcm.edu;bcgsc.ca	37	6	170700175	170700175	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	58	4	60	0	37	37	0	0	0
HEATR2	54919	bcgsc.ca	37	7	810180	810180	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	64	6	66	0	60	60	0	0	0
SUN1	23353	bcgsc.ca	37	7	901059	901059	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	163	10	98	0	71	71	0	0	0
TMEM184A	202915	ucsc.edu	37	7	1587416	1587416	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	39	4	30	1	8	8	0	0	0
SDK1	221935	bcgsc.ca	37	7	4153005	4153005	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	262	10	290	1	14	14	0	0	0
LOC389458	0	bcgsc.ca	37	7	5112604	5112604	+	RNA	SNP	C	C	A	rs139042555	byfrequency;alternate_allele	TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	119	8	130	0	0	0	0	0	0
DAGLB	221955	bcgsc.ca	37	7	6456271	6456271	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	157	8	156	0	0	0	0	0	0
PHF14	9678	ucsc.edu	37	7	11062530	11062530	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	40	4	28	0	27	26	1	0	0
SCIN	85477	ucsc.edu	37	7	12683829	12683829	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	42	4	32	0	367	367	0	0	0
GPNMB	10457	bcgsc.ca	37	7	23299723	23299723	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	176	9	125	1	1701	1699	1	1	0
VPS41	27072	bcgsc.ca	37	7	38812198	38812198	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	66	6	51	0	55	55	0	0	0
DDX56	54606	ucsc.edu	37	7	44607782	44607782	+	Missense_Mutation	SNP	C	C	A	rs188954038	alternate_allele	TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	43	4	54	0	110	110	0	0	0
OGDH	4967	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	44685022	44685022	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	169	35	159	0	128	95	33	0	0
AUTS2	26053	ucsc.edu	37	7	70255183	70255183	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	21	4	61	0	13	13	0	0	0
NSUN5P2	260294	ucsc.edu	37	7	72420466	72420466	+	RNA	SNP	C	C	T	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	86	2	83	1	18	9	9	0	0
LIMK1	3984	ucsc.edu	37	7	73521431	73521431	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	30	5	46	0	57	57	0	0	0
HIP1	3092	bcgsc.ca	37	7	75174099	75174099	+	Splice_Site	SNP	C	C	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	80	7	70	0	0	0	0	0	0
SEMA3E	9723	ucsc.edu	37	7	83277821	83277821	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	52	5	61	0	3	3	0	0	0
ABCB1	5243	bcgsc.ca	37	7	87145825	87145825	+	Silent	SNP	C	C	A	rs2235044	alternate_allele	TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	232	11	145	0	0	0	0	0	0
MTERF	7978	bcgsc.ca	37	7	91503839	91503839	+	Missense_Mutation	SNP	C	C	A	rs200478408	alternate_allele	TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	144	10	99	0	6	6	0	0	0
STAG3	10734	bcgsc.ca	37	7	99802728	99802728	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	389	17	346	0	1	1	0	0	0
PCOLCE	5118	bcgsc.ca	37	7	100205290	100205290	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	205	9	175	0	32	32	0	0	0
ZAN	7455	bcgsc.ca	37	7	100344278	100344278	+	Missense_Mutation	SNP	G	G	T	rs200325161	alternate_allele	TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	234	9	260	0	0	0	0	0	0
CUX1	1523	ucsc.edu	37	7	101882662	101882662	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	49	5	37	0	19	19	0	0	0
PUS7	54517	bcgsc.ca	37	7	105122832	105122832	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	330	14	192	0	3	3	0	0	0
MET	4233	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	116423407	116423407	+	Missense_Mutation	SNP	G	G	C	rs28932777	alternate_allele	TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	101	30	67	1	323	132	191	0	0
FLNC	2318	ucsc.edu	37	7	128470781	128470781	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	44	4	47	0	75	75	0	0	0
ZC3HC1	51530	bcgsc.ca	37	7	129658526	129658526	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	209	11	143	0	46	46	0	0	0
KIAA1549	57670	ucsc.edu	37	7	138602845	138602845	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	39	4	48	0	7	7	0	0	0
UBN2	254048	bcgsc.ca	37	7	138978727	138978727	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	79	7	68	0	0	0	0	0	0
TRPV5	56302	ucsc.edu	37	7	142606738	142606738	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	46	5	50	0	0	0	0	0	0
ZNF777	27153	ucsc.edu	37	7	149129809	149129809	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	43	4	51	0	12	12	0	0	0
ZNF467	168544	ucsc.edu	37	7	149463183	149463183	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	34	4	41	0	10	10	0	0	0
SSPO	23145	ucsc.edu	37	7	149500084	149500084	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	25	4	19	0	0	0	0	0	0
SSPO	23145	ucsc.edu	37	7	149511898	149511898	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	12	4	11	0	0	0	0	0	0
ABP1	26	bcgsc.ca	37	7	150558051	150558051	+	Silent	SNP	G	G	T	rs137910086	alternate_allele	TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	124	7	98	0	630	630	0	0	0
SMARCD3	6604	ucsc.edu	37	7	150939009	150939009	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	33	4	33	0	96	96	0	0	0
DPP6	1804	ucsc.edu	37	7	154667749	154667749	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	42	6	53	1	5	5	0	0	0
SOX7	83595	ucsc.edu	37	8	10583597	10583597	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	52	6	93	0	2	2	0	0	0
FAM160B2	64760	ucsc.edu	37	8	21955263	21955263	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	39	4	31	0	15	15	0	0	0
HR	55806	broad.mit.edu	37	8	21984840	21984840	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	325	8	348	0	0	0	0	0	0
BMP1	649	ucsc.edu	37	8	22059345	22059345	+	Missense_Mutation	SNP	G	G	T	rs148687489	alternate_allele	TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	33	4	34	0	73	73	0	0	0
SLC39A14	23516	hgsc.bcm.edu	37	8	22273369	22273369	+	Missense_Mutation	SNP	G	G	T	rs111637707	byfrequency;alternate_allele	TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	119	7	110	0	22	22	0	0	0
NEFL	4747	ucsc.edu	37	8	24813289	24813289	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	34	4	31	0	21	21	0	0	0
ADRA1A	148	ucsc.edu	37	8	26721840	26721840	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	29	4	37	0	0	0	0	0	0
RAB11FIP1	80223	ucsc.edu	37	8	37727989	37727989	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	52	5	80	0	59	59	0	0	0
PLEKHA2	59339	ucsc.edu	37	8	38775550	38775550	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	41	5	42	0	26	26	0	0	0
ADAM32	203102	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	39044454	39044454	+	Silent	SNP	A	A	G	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	139	34	83	0	0	0	0	0	0
CHD7	55636	ucsc.edu	37	8	61765691	61765691	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	39	4	49	0	15	15	0	0	0
CHD7	55636	ucsc.edu	37	8	61774821	61774821	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	31	5	23	0	12	12	0	0	0
HEY1	23462	ucsc.edu	37	8	80677734	80677734	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	34	4	61	0	1	1	0	0	0
ZNF704	619279	ucsc.edu	37	8	81553672	81553672	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	43	5	52	0	2	2	0	0	0
FABP12	646486	ucsc.edu	37	8	82439269	82439269	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	37	5	29	0	0	0	0	0	0
OSGIN2	734	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	90936955	90936955	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	95	30	84	0	23	10	12	0	1
DPY19L4	286148	bcgsc.ca	37	8	95789954	95789954	+	Silent	SNP	C	C	A	rs199585103	alternate_allele	TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	238	9	184	0	17	17	0	0	0
ZFPM2	23414	bcgsc.ca	37	8	106813921	106813921	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	170	9	217	0	2	2	0	0	0
CSMD3	114788	bcgsc.ca	37	8	114326923	114326923	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	212	11	191	0	0	0	0	0	0
NSMCE2	286053	bcgsc.ca	37	8	126114558	126114558	+	Splice_Site	SNP	G	G	T	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	120	9	111	1	0	0	0	0	0
AGO2	27161	bcgsc.ca	37	8	141549487	141549487	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	75	6	89	1	4	4	0	0	0
ZFP41	286128	bcgsc.ca	37	8	144332427	144332427	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	143	8	162	0	9	9	0	0	0
PLEC	5339	bcgsc.ca	37	8	145011406	145011406	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	69	6	67	0	3	3	0	0	0
NDUFB6	4712	bcgsc.ca	37	9	32553943	32553943	+	Splice_Site	SNP	C	C	A	rs113167815	bycluster	TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	152	9	121	0	1	1	0	0	0
PIGO	84720	ucsc.edu	37	9	35093097	35093097	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	51	5	55	0	38	38	0	0	0
RECK	8434	bcgsc.ca	37	9	36110025	36110025	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	186	9	144	0	2	2	0	0	0
MAMDC2	256691	bcgsc.ca	37	9	72755150	72755150	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	170	12	141	0	19	19	0	0	0
TMEM2	23670	bcgsc.ca	37	9	74312983	74312983	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	125	8	114	1	58	58	0	0	0
CEP78	84131	ucsc.edu	37	9	80881524	80881524	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	38	4	22	0	6	6	0	0	0
PSAT1	29968	ucsc.edu;bcgsc.ca	37	9	80916930	80916930	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	54	6	49	0	0	0	0	0	0
LOC389765	0	ucsc.edu	37	9	88455682	88455682	+	RNA	SNP	G	G	T	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	40	4	30	0	5	5	0	0	0
ASPN	54829	ucsc.edu	37	9	95237174	95237174	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	47	5	41	0	0	0	0	0	0
ACTL7B	10880	ucsc.edu	37	9	111617843	111617843	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	49	5	68	0	0	0	0	0	0
MUSK	4593	bcgsc.ca	37	9	113547909	113547909	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	222	10	229	0	0	0	0	0	0
HDHD3	81932	ucsc.edu	37	9	116136535	116136535	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	34	4	49	0	58	57	1	0	0
ASTN2	23245	bcgsc.ca	37	9	119204804	119204804	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	132	8	128	0	4	4	0	0	0
CDK5RAP2	55755	bcgsc.ca	37	9	123210192	123210192	+	Silent	SNP	G	G	T	rs149463541	byfrequency;alternate_allele	TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	255	10	223	1	8	8	0	0	0
SLC2A8	29988	broad.mit.edu;bcgsc.ca	37	9	130160364	130160364	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	24	8	22	0	14	11	3	0	0
PKN3	29941	ucsc.edu	37	9	131475877	131475877	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	62	6	95	1	9	9	0	0	0
TOR1A	1861	bcgsc.ca	37	9	132576388	132576388	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	247	13	237	0	60	60	0	0	0
MED22	6837	ucsc.edu	37	9	136208384	136208384	+	Missense_Mutation	SNP	C	C	A	rs144767798	alternate_allele	TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	34	4	38	0	65	65	0	0	0
SLC2A6	11182	ucsc.edu	37	9	136338579	136338579	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	32	4	31	0	4	4	0	0	0
SEC16A	9919	ucsc.edu	37	9	139369721	139369721	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	32	4	49	0	26	26	0	0	0
ABCA2	20	ucsc.edu	37	9	139911112	139911112	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	51	5	51	0	8	8	0	0	0
MXRA5	25878	ucsc.edu	37	X	3227870	3227870	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	44	4	45	0	50	50	0	0	0
MXRA5	25878	ucsc.edu	37	X	3239348	3239348	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	47	6	45	0	21	21	0	0	0
SHROOM2	357	ucsc.edu	37	X	9864091	9864091	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	19	4	20	0	4	4	0	0	0
ARHGAP6	395	ucsc.edu	37	X	11682427	11682427	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	34	4	43	0	6	6	0	0	0
FANCB	2187	bcgsc.ca	37	X	14883112	14883112	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	108	8	90	0	0	0	0	0	0
CDKL5	6792	bcgsc.ca	37	X	18622107	18622107	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	174	9	166	0	6	6	0	0	0
POLA1	5422	ucsc.edu;bcgsc.ca	37	X	24745098	24745098	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	21	5	21	0	3	3	0	0	0
ZNF674	641339	ucsc.edu	37	X	46359547	46359547	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	31	4	39	0	0	0	0	0	0
ZNF81	347344	ucsc.edu	37	X	47775483	47775483	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	37	4	28	0	2	2	0	0	0
PPP1R3F	89801	ucsc.edu	37	X	49142727	49142727	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	28	4	25	0	3	3	0	0	0
HUWE1	10075	ucsc.edu	37	X	53578295	53578295	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	25	4	13	0	102	102	0	0	0
HUWE1	10075	ucsc.edu	37	X	53607921	53607921	+	Silent	SNP	G	G	T	rs142982950	alternate_allele	TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	16	4	23	0	25	25	0	0	0
PHF8	23133	ucsc.edu	37	X	54026370	54026370	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	39	4	39	0	18	18	0	0	0
FAM120C	54954	ucsc.edu	37	X	54143213	54143213	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	37	4	39	0	2	2	0	0	0
WNK3	65267	ucsc.edu	37	X	54264844	54264844	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	38	4	39	0	0	0	0	0	0
UBQLN2	29978	ucsc.edu	37	X	56591231	56591231	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	26	4	35	0	42	42	0	0	0
AMER1	139285	ucsc.edu	37	X	63411365	63411365	+	Missense_Mutation	SNP	C	C	A	rs149865410	alternate_allele	TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	24	4	42	0	2	2	0	0	0
VSIG4	11326	ucsc.edu	37	X	65244923	65244923	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	16	4	13	0	160	160	0	0	0
SLC7A3	84889	ucsc.edu;bcgsc.ca	37	X	70147837	70147837	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	27	5	26	0	0	0	0	0	0
MED12	9968	ucsc.edu	37	X	70349663	70349663	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	28	4	22	0	34	34	0	0	0
XIST	7503	ucsc.edu	37	X	73070389	73070389	+	RNA	SNP	C	C	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	22	4	14	0	0	0	0	0	0
KIAA2022	340533	bcgsc.ca	37	X	73960460	73960460	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	98	7	90	1	0	0	0	0	0
SATL1	340562	ucsc.edu	37	X	84363002	84363002	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	45	5	44	0	0	0	0	0	0
GLRA4	441509	ucsc.edu	37	X	102973942	102973942	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	42	4	44	0	0	0	0	0	0
NRK	203447	ucsc.edu	37	X	105183884	105183884	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	22	4	20	0	0	0	0	0	0
MORC4	79710	bcgsc.ca	37	X	106219904	106219904	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	74	7	75	0	0	0	0	0	0
COL4A5	1287	bcgsc.ca	37	X	107826113	107826113	+	Splice_Site	SNP	G	G	T	rs104886448	alternate_allele	TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	119	8	103	0	0	0	0	0	0
RGAG1	57529	bcgsc.ca	37	X	109695032	109695032	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	248	15	275	0	0	0	0	0	0
WDR44	54521	ucsc.edu	37	X	117528055	117528055	+	Silent	SNP	C	C	A	rs138405681	byfrequency;alternate_allele	TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	52	5	61	0	18	18	0	0	0
THOC2	57187	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	122770007	122770007	+	Silent	SNP	A	A	G	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	72	36	59	1	12	1	11	0	0
UTP14A	10813	ucsc.edu	37	X	129055382	129055382	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	41	5	42	0	33	19	14	0	0
ELF4	2000	bcgsc.ca	37	X	129201032	129201032	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	59	6	90	0	22	22	0	0	0
ZNF275	10838	ucsc.edu	37	X	152613054	152613054	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	7	2	14	0	6	1	5	0	0
PTCHD3	374308	broad.mit.edu;bcgsc.ca	37	10	27687672	27687673	+	In_Frame_Ins	INS	-	-	GTATAT	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	102	12	119	0	0	0	0	0	0
H2AFJ	55766	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	14927683	14927684	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	159	58	131	0	0	0	0	0	0
OGG1	4968	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	9800959	9800960	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	157	32	172	0	0	0	0	0	0
MAML1	9794	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	179193559	179193560	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	80	19	103	0	0	0	0	0	0
TBC1D9B	23061	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	179318454	179318455	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	176	41	184	0	0	0	0	0	0
KLHL7	55975	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	23163475	23163476	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	94	30	49	0	0	0	0	0	0
MCPH1	79648	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	6335132	6335133	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	281	77	159	0	0	0	0	0	0
GSN	2934	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	9	124089637	124089638	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	85	16	83	0	0	0	0	0	0
