Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	TTotCov	TVarCov	NTotCov	NVarCov	Trna_tot	Trna_ref	Trna_var	Trna_alt1	Trna_alt2
NADK	65220	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	1686870	1686870	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	268	48	259	0	90	57	33	0	0
RPL11	6135	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	24021204	24021204	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	131	43	127	0	2399	1566	833	0	0
ZSCAN20	7579	bcgsc.ca	37	1	33956714	33956714	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	78	4	77	0	3	3	0	0	0
CC2D1B	200014	hgsc.bcm.edu	37	1	52822691	52822691	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	9	3	8	0	71	44	27	0	0
LMO4	8543	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	87805263	87805263	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	58	17	54	0	0	0	0	0	0
KCND3	3752	bcgsc.ca	37	1	112525250	112525250	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	84	5	52	0	1	1	0	0	0
S100A7L2	645922	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	153409541	153409541	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	309	63	375	2	0	0	0	0	0
PRCC	5546	ucsc.edu	37	1	156737662	156737662	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	24	4	24	0	43	43	0	0	0
ZBTB37	84614	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	173839638	173839638	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	80	19	71	0	3	2	1	0	0
NFASC	23114	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	1	204923960	204923960	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	213	51	190	0	0	0	0	0	0
FMN2	56776	bcgsc.ca	37	1	240371517	240371517	+	Silent	SNP	T	T	A	novel		TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	41	14	32	1	0	0	0	0	0
ITGB1	3688	broad.mit.edu	37	10	33208866	33208866	+	Silent	SNP	A	A	G	novel		TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	172	4	187	0	225	224	1	0	0
IFIT5	24138	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	91177427	91177427	+	Silent	SNP	A	A	G	novel		TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	102	24	94	0	13	10	3	0	0
DMBT1	1755	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	124352013	124352013	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	321	21	254	1	0	0	0	0	0
MUC5B	727897	hgsc.bcm.edu	37	11	1268402	1268402	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	22	6	11	0	0	0	0	0	0
AGBL2	79841	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	47726183	47726183	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	98	24	112	0	0	0	0	0	0
MS4A8	83661	hgsc.bcm.edu;bcgsc.ca	37	11	60482801	60482801	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	75	6	79	0	0	0	0	0	0
HNRNPUL2	221092	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	62489600	62489600	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	101	25	74	0	0	0	0	0	0
SHANK2	22941	bcgsc.ca	37	11	70333074	70333074	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	83	7	74	0	5	5	0	0	0
PAFAH1B2	5049	bcgsc.ca	37	11	117023198	117023198	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	119	6	128	0	37	37	0	0	0
LOC100288778	0	broad.mit.edu	37	12	92018	92018	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	10	3	9	0	7	7	0	0	0
RAD51AP1	10635	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	4657343	4657343	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	108	46	82	0	0	0	0	0	0
PLEKHG6	55200	bcgsc.ca	37	12	6427504	6427504	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	111	7	80	0	14	14	0	0	0
LMBR1L	55716	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	49500795	49500795	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	317	136	219	0	30	11	19	0	0
SCN8A	6334	bcgsc.ca	37	12	52145205	52145205	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	328	11	265	2	1	1	0	0	0
ZC3H10	84872	ucsc.edu;bcgsc.ca	37	12	56514729	56514729	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	64	6	45	0	21	21	0	0	0
TMEM19	55266	broad.mit.edu	37	12	72092800	72092800	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	184	5	178	1	58	58	0	0	0
PAH	5053	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	103234258	103234258	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	144	64	140	0	3	0	3	0	0
HCAR2	338442	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	123187395	123187395	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	167	36	139	0	2	2	0	0	0
EIF2B2	8892	ucsc.edu	37	14	75470036	75470036	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	35	4	27	0	59	59	0	0	0
CHRNA5	1138	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	78885562	78885562	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	59	13	57	0	1	1	0	0	0
TARSL2	123283	ucsc.edu	37	15	102252162	102252162	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	38	4	28	0	3	3	0	0	0
WASH3P	374666	broad.mit.edu	37	15	102515353	102515353	+	RNA	SNP	A	A	G	novel		TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	79	4	95	1	104	93	11	0	0
ADCY9	115	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	4029168	4029168	+	Silent	SNP	G	G	A	novel		TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	157	30	140	0	40	25	15	0	0
ACSM3	6296	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	20787239	20787239	+	Silent	SNP	C	C	T	novel		TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	248	53	188	0	31	16	15	0	0
FUS	2521	ucsc.edu	37	16	31195324	31195324	+	Splice_Site	SNP	G	G	T	novel		TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	246	3	156	0	0	0	0	0	0
MTSS1L	92154	ucsc.edu	37	16	70711782	70711782	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	41	4	29	0	6	6	0	0	0
WDR81	124997	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	17	1631524	1631524	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	152	25	102	0	18	18	0	0	0
PELP1	27043	hgsc.bcm.edu	37	17	4575451	4575451	+	Silent	SNP	T	T	C	novel		TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	9	4	6	2	98	33	65	0	0
RNF167	26001	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	4848277	4848277	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	450	100	309	1	470	363	107	0	0
KIF1C	10749	ucsc.edu	37	17	4908297	4908297	+	Splice_Site	SNP	T	T	C	novel		TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	210	1	155	1	0	0	0	0	0
SLC16A11	162515	hgsc.bcm.edu	37	17	6946083	6946083	+	Splice_Site	SNP	C	C	T	novel		TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	13	9	8	2	0	0	0	0	0
FXR2	9513	ucsc.edu	37	17	7506314	7506314	+	Silent	SNP	G	G	T	rs200045144		TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	28	4	22	0	0	0	0	0	0
MYO19	80179	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	34871758	34871758	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	74	13	54	0	32	21	11	0	0
DGKE	8526	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	54926211	54926211	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	112	26	93	0	0	0	0	0	0
SLC14A2	8170	broad.mit.edu	37	18	43262338	43262338	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	530	7	514	0	0	0	0	0	0
FZR1	51343	bcgsc.ca	37	19	3527006	3527006	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	108	7	112	0	33	33	0	0	0
STAP2	55620	hgsc.bcm.edu;broad.mit.edu	37	19	4328673	4328673	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	23	10	19	0	0	0	0	0	0
ACER1	125981	broad.mit.edu	37	19	6312191	6312191	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	63	8	62	0	0	0	0	0	0
HNRNPM	4670	ucsc.edu	37	19	8527467	8527467	+	Splice_Site	SNP	T	T	G	novel		TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	132	1	150	0	0	0	0	0	0
CERS1	10715	ucsc.edu	37	19	18994964	18994964	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	37	4	34	0	0	0	0	0	0
MYBPC2	4606	ucsc.edu	37	19	50967789	50967789	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	40	4	37	0	0	0	0	0	0
EML4	27436	ucsc.edu	37	2	42483669	42483669	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	49	5	76	0	13	13	0	0	0
KIF5C	3800	ucsc.edu	37	2	149799207	149799207	+	Silent	SNP	G	G	A	novel		TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	36	4	25	0	0	0	0	0	0
COL4A3	1285	ucsc.edu	37	2	228104874	228104874	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	34	4	19	0	6	6	0	0	0
DIS3L2	129563	hgsc.bcm.edu	37	2	233199380	233199380	+	Missense_Mutation	SNP	A	A	G	rs2697798		TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	26	6	8	2	51	51	0	0	0
ALPI	248	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	233322816	233322816	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	108	26	105	0	1	0	1	0	0
PPP1R16B	26051	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	37536822	37536822	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	84	14	49	0	0	0	0	0	0
PPP1R16B	26051	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	37536828	37536828	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	73	12	43	0	0	0	0	0	0
ADA	100	broad.mit.edu;bcgsc.ca	37	20	43264929	43264929	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	24	5	32	0	0	0	0	0	0
APOL6	80830	hgsc.bcm.edu	37	22	36055619	36055619	+	Silent	SNP	C	C	G	novel		TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	32	3	27	0	11	11	0	0	0
MICALL1	85377	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	38313744	38313744	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	117	28	110	0	22	13	9	0	0
IL17RE	132014	bcgsc.ca	37	3	9952696	9952696	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	107	6	72	0	0	0	0	0	0
TMEM43	79188	ucsc.edu;bcgsc.ca	37	3	14176727	14176727	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	49	8	30	0	19	13	6	0	0
SCAP	22937	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	47455522	47455522	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	163	68	127	1	205	79	125	1	0
PLXNB1	5364	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	48459373	48459373	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	94	20	87	0	131	87	44	0	0
NDUFAF3	25915	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	49059877	49059877	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	106	23	66	0	422	295	125	2	0
DNAH1	25981	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	52432935	52432935	+	Silent	SNP	A	A	G	novel		TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	49	11	36	0	7	5	2	0	0
ATP6V1A	523	ucsc.edu	37	3	113497667	113497667	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	41	4	33	0	24	24	0	0	0
FAM86HP	729375	broad.mit.edu	37	3	129817290	129817290	+	RNA	SNP	A	A	G	rs59443817		TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	37	9	21	0	45	1	44	0	0
LOC100128164	0	ucsc.edu	37	3	169663863	169663863	+	RNA	SNP	G	G	T	novel		TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	241	1	187	0	1422	0	1421	0	1
HRG	3273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	186383957	186383957	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	183	76	162	1	0	0	0	0	0
LDB2	9079	bcgsc.ca	37	4	16597346	16597346	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	144	7	136	0	11	11	0	0	0
LOC344967	0	ucsc.edu	37	4	40045397	40045397	+	RNA	SNP	G	G	T	novel		TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	43	4	34	0	0	0	0	0	0
TRAPPC11	60684	bcgsc.ca	37	4	184605492	184605492	+	Missense_Mutation	SNP	G	G	T	rs202145488	alternate_allele	TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	76	6	97	0	12	12	0	0	0
FTMT	94033	broad.mit.edu;bcgsc.ca	37	5	121187826	121187826	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	21	6	20	0	0	0	0	0	0
PDGFRB	5159	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	149515196	149515213	+	In_Frame_Del	DEL	CCGTGTCTAGCCCAGTGA	CCGTGTCTAGCCCAGTGA	-	novel		TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08	CCGTGTCTAGCCCAGTGA	CCGTGTCTAGCCCAGTGA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	116	22	131	0	0	0	0	0	0
RGS14	10636	bcgsc.ca	37	5	176795854	176795854	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	63	5	54	0	33	33	0	0	0
DST	667	ucsc.edu	37	6	56371329	56371329	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	33	4	29	0	29	29	0	0	0
SNAP91	9892	ucsc.edu	37	6	84302712	84302712	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	13	4	15	0	0	0	0	0	0
ASCC3	10973	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	101296249	101296249	+	Silent	SNP	T	T	A	novel		TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	70	16	67	0	0	0	0	0	0
SYTL3	94120	ucsc.edu	37	6	159172997	159172997	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	34	4	31	0	23	23	0	0	0
SPDYE6	729597	broad.mit.edu	37	7	101988946	101988946	+	Silent	SNP	G	G	A	novel		TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	1717	106	1566	1	47	46	1	0	0
KIAA1549	57670	hgsc.bcm.edu	37	7	138546145	138546145	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	53	3	39	0	32	31	0	0	1
NOM1	64434	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	156752614	156752614	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	61	16	58	0	0	0	0	0	0
TTI2	80185	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	33369560	33369560	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	363	95	353	0	5	2	3	0	0
TERF1	7013	broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	73921183	73921183	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	46	9	52	0	8	4	4	0	0
PSCA	8000	hgsc.bcm.edu	37	8	143762846	143762846	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	16	6	14	0	0	0	0	0	0
DENND4C	55667	bcgsc.ca	37	9	19332022	19332022	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	64	6	53	0	6	6	0	0	0
TLN1	7094	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	35698169	35698169	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	83	14	70	0	0	0	0	0	0
SPATA31C1	441452	broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	90536638	90536638	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	284	87	248	1	0	0	0	0	0
LOC100499484-C9ORF174	0	bcgsc.ca	37	9	100132867	100132876	+	RNA	DEL	TCAGTGACTT	TCAGTGACTT	-	novel		TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08	TCAGTGACTT	TCAGTGACTT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	180	33	228	0	0	0	0	0	0
GABBR2	9568	ucsc.edu	37	9	101053012	101053012	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	31	4	14	0	0	0	0	0	0
GARNL3	84253	ucsc.edu	37	9	130083007	130083007	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	43	4	62	0	1	1	0	0	0
POLA1	5422	hgsc.bcm.edu	37	X	24906189	24906189	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	62	4	51	0	9	9	0	0	0
MAOA	4128	ucsc.edu	37	X	43515619	43515619	+	Silent	SNP	G	G	A	novel		TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	34	4	33	0	19	19	0	0	0
MED12	9968	ucsc.edu	37	X	70342432	70342432	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	32	4	45	0	17	17	0	0	0
NLGN3	54413	ucsc.edu	37	X	70367920	70367920	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	39	4	33	0	2	2	0	0	0
MORC4	79710	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	106201626	106201626	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	59	32	50	0	10	5	5	0	0
ZNF407	55628	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	18	72344119	72344120	+	Frame_Shift_Ins	INS	-	-	TA	novel		TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	94	26	75	0	0	0	0	0	0
