Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	TTotCov	TVarCov	NTotCov	NVarCov	Trna_tot	Trna_ref	Trna_var	Trna_alt1	Trna_alt2
ATAD3C	219293	ucsc.edu	37	1	1396235	1396235	+	Silent	SNP	G	G	T	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	40	4	65	0	0	0	0	0	0
SKI	6497	hgsc.bcm.edu	37	1	2160390	2160390	+	Missense_Mutation	SNP	C	C	G	rs28384811		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	6	4	0	0	0	0	0	0	0
MORN1	79906	ucsc.edu	37	1	2268199	2268199	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	41	4	47	0	10	10	0	0	0
CLSTN1	22883	bcgsc.ca	37	1	9795092	9795092	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	158	9	213	1	375	374	1	0	0
CASZ1	54897	ucsc.edu	37	1	10720549	10720549	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	51	5	79	0	12	12	0	0	0
MAD2L2	10459	bcgsc.ca	37	1	11740455	11740455	+	Silent	SNP	G	G	T	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	192	9	254	0	28	28	0	0	0
CROCCP2	84809	broad.mit.edu	37	1	16946434	16946434	+	RNA	SNP	C	C	T	rs367060		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	15	4	25	0	17	10	7	0	0
EIF4G3	8672	bcgsc.ca	37	1	21151677	21151677	+	Silent	SNP	C	C	A	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	75	7	59	0	41	41	0	0	0
GALE	2582	ucsc.edu	37	1	24123378	24123378	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	36	4	43	0	268	268	0	0	0
ZC3H12A	80149	ucsc.edu	37	1	37948726	37948726	+	Silent	SNP	G	G	T	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	31	4	61	0	21	21	0	0	0
AGBL4	84871	ucsc.edu	37	1	49056658	49056658	+	Splice_Site	SNP	C	C	A	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	28	4	29	0	0	0	0	0	0
MCOLN3	55283	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	85491894	85491894	+	Silent	SNP	G	G	C	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	116	44	132	0	2	2	0	0	0
STRIP1	85369	bcgsc.ca	37	1	110581321	110581321	+	Silent	SNP	G	G	T	rs183730102	alternate_allele	TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	111	6	94	0	14	14	0	0	0
LRIG2	9860	bcgsc.ca	37	1	113657107	113657107	+	Silent	SNP	G	G	T	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	103	6	130	2	0	0	0	0	0
LCE3D	84648	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	152552161	152552161	+	Silent	SNP	G	G	A	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	251	86	280	2	0	0	0	0	0
CHRNB2	1141	ucsc.edu	37	1	154542822	154542822	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	32	4	28	0	2	2	0	0	0
BCAN	63827	broad.mit.edu	37	1	156615922	156615922	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	62	3	55	0	33	33	0	0	0
FCGR2B	2213	ucsc.edu	37	1	161645078	161645078	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	34	4	40	0	18	18	0	0	0
LGR6	59352	bcgsc.ca	37	1	202287710	202287710	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	71	6	86	0	0	0	0	0	0
UCN3	114131	ucsc.edu	37	10	5416052	5416052	+	Silent	SNP	C	C	A	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	51	5	61	0	0	0	0	0	0
ITGB1	3688	ucsc.edu	37	10	33197448	33197448	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	44	4	52	1	778	778	0	0	0
ZNF37A	7587	ucsc.edu	37	10	38404190	38404190	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	50	5	48	0	9	9	0	0	0
BMS1	9790	ucsc.edu	37	10	43315737	43315737	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	154	3	122	1	118	97	21	0	0
USP54	159195	bcgsc.ca	37	10	75277310	75277310	+	Silent	SNP	C	C	A	rs144319515		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	70	6	74	0	36	36	0	0	0
ANXA11	311	ucsc.edu	37	10	81929049	81929049	+	Silent	SNP	C	C	A	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	32	4	48	0	768	767	0	1	0
WAPAL	23063	ucsc.edu	37	10	88227264	88227264	+	Splice_Site	SNP	C	C	A	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	37	4	29	0	0	0	0	0	0
SLIT1	6585	ucsc.edu	37	10	98820502	98820502	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	49	5	52	0	0	0	0	0	0
RRP12	23223	ucsc.edu	37	10	99141211	99141211	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	39	4	28	0	17	17	0	0	0
MMS19	64210	bcgsc.ca	37	10	99237112	99237112	+	Missense_Mutation	SNP	C	C	A	rs200904065	alternate_allele	TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	135	8	126	0	9	9	0	0	0
VWA2	340706	bcgsc.ca	37	10	116014801	116014801	+	Silent	SNP	C	C	A	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	195	10	222	0	0	0	0	0	0
BTBD16	118663	bcgsc.ca	37	10	124090730	124090730	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	140	9	159	0	2	2	0	0	0
GPR123	84435	bcgsc.ca	37	10	134910529	134910529	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	86	8	87	0	0	0	0	0	0
LOC650368	0	broad.mit.edu	37	11	3427845	3427845	+	RNA	SNP	C	C	T	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	63	5	78	1	20	7	13	0	0
NAV2	89797	bcgsc.ca	37	11	20122579	20122579	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	185	8	160	0	16	16	0	0	0
WT1	7490	bcgsc.ca	37	11	32449552	32449552	+	Silent	SNP	G	G	T	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	77	6	66	0	0	0	0	0	0
ACCS	84680	ucsc.edu	37	11	44089399	44089399	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	49	5	67	0	13	13	0	0	0
DGKZ	8525	ucsc.edu	37	11	46393286	46393286	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	40	4	46	0	49	49	0	0	0
BEST1	7439	ucsc.edu;bcgsc.ca	37	11	61729770	61729770	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	64	6	70	0	2	2	0	0	0
EML3	256364	bcgsc.ca	37	11	62373390	62373390	+	Silent	SNP	C	C	A	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	132	8	161	0	48	48	0	0	0
RASGRP2	10235	ucsc.edu	37	11	64504470	64504470	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	41	4	42	0	6	6	0	0	0
ATM	472	bcgsc.ca	37	11	108124727	108124727	+	Silent	SNP	G	G	T	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	96	8	70	0	15	15	0	0	0
C11orf92	399948	bcgsc.ca	37	11	111166989	111166989	+	RNA	SNP	G	G	T	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	96	7	97	0	1	1	0	0	0
AMICA1	120425	bcgsc.ca	37	11	118067508	118067508	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	270	13	271	2	44	44	0	0	0
VWA5A	4013	bcgsc.ca	37	11	123988252	123988252	+	Silent	SNP	C	C	A	rs200114560	alternate_allele	TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	106	7	115	0	0	0	0	0	0
VSIG2	23584	ucsc.edu;bcgsc.ca	37	11	124620611	124620611	+	Silent	SNP	C	C	A	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	48	6	33	0	0	0	0	0	0
CACNA1C	775	ucsc.edu	37	12	2694603	2694603	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	23	4	31	0	1	1	0	0	0
CHD4	1108	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	6711561	6711561	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	417	127	520	0	82	57	25	0	0
RPL13AP20	387841	ucsc.edu	37	12	13028751	13028751	+	RNA	SNP	G	G	C	rs199863259		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	15	4	21	1	4600	4598	1	0	1
CPNE8	144402	bcgsc.ca	37	12	39124085	39124085	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	109	8	68	0	0	0	0	0	0
ARID2	196528	ucsc.edu	37	12	46285848	46285848	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	42	4	35	0	14	14	0	0	0
SPRYD3	84926	bcgsc.ca	37	12	53459657	53459657	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	122	7	121	0	111	110	0	0	1
LRP1	4035	ucsc.edu	37	12	57592252	57592252	+	Missense_Mutation	SNP	C	C	A	rs138415228	alternate_allele	TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	41	4	33	0	0	0	0	0	0
CHFR	55743	bcgsc.ca	37	12	133434036	133434036	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	65	6	84	0	52	52	0	0	0
SAP18	10284	bcgsc.ca	37	13	21715107	21715107	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	243	9	188	0	348	348	0	0	0
SPATA13	221178	ucsc.edu	37	13	24865021	24865021	+	Missense_Mutation	SNP	G	G	T	rs138395874	byfrequency;alternate_allele	TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	37	4	24	0	0	0	0	0	0
LNX2	222484	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	28143269	28143269	+	Silent	SNP	G	G	A	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	346	119	339	1	20	9	11	0	0
RFC3	5983	ucsc.edu	37	13	34398105	34398105	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	29	4	47	0	8	8	0	0	0
VWA8	23078	bcgsc.ca	37	13	42185804	42185804	+	Silent	SNP	C	C	A	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	170	8	132	0	14	14	0	0	0
KLHL1	57626	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	70549759	70549759	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	157	50	136	0	0	0	0	0	0
COL4A1	1282	bcgsc.ca	37	13	110830475	110830475	+	Silent	SNP	C	C	A	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	170	9	166	0	101	101	0	0	0
HECTD1	25831	bcgsc.ca	37	14	31647375	31647375	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	128	7	126	0	34	34	0	0	0
FAM179B	23116	bcgsc.ca	37	14	45432386	45432386	+	Silent	SNP	C	C	A	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	182	8	178	0	13	13	0	0	0
AHNAK2	113146	ucsc.edu	37	14	105418145	105418145	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	45	1	90	0	137	97	40	0	0
UBE3A	7337	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	25616649	25616649	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	231	80	226	0	75	41	34	0	0
PPIP5K1	9677	ucsc.edu	37	15	43831739	43831739	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	42	4	30	0	19	19	0	0	0
ARIH1	25820	bcgsc.ca	37	15	72873183	72873183	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	129	8	130	1	34	34	0	0	0
SEMA7A	8482	ucsc.edu	37	15	74710630	74710630	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	40	4	47	0	6	6	0	0	0
PSTPIP1	9051	ucsc.edu	37	15	77325272	77325272	+	Missense_Mutation	SNP	C	C	A	rs189773500	alternate_allele	TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	22	4	18	0	7	7	0	0	0
ZNF592	9640	ucsc.edu	37	15	85341271	85341271	+	Silent	SNP	C	C	A	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	37	4	46	0	7	7	0	0	0
CCDC78	124093	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	775528	775528	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	58	20	47	0	0	0	0	0	0
SNX29	92017	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	12618621	12618621	+	Silent	SNP	C	C	T	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	110	40	128	0	80	41	39	0	0
APOBR	55911	ucsc.edu	37	16	28509404	28509404	+	Silent	SNP	C	C	A	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	44	4	66	0	0	0	0	0	0
PRSS36	146547	ucsc.edu	37	16	31157261	31157261	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	51	5	51	0	0	0	0	0	0
TGFB1I1	7041	bcgsc.ca	37	16	31485237	31485237	+	Silent	SNP	C	C	A	rs192606816	alternate_allele	TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	169	8	195	0	10	10	0	0	0
ABCC11	85320	ucsc.edu	37	16	48210875	48210875	+	Silent	SNP	G	G	A	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	42	4	48	0	0	0	0	0	0
ABCC11	85320	ucsc.edu	37	16	48210905	48210905	+	Silent	SNP	G	G	T	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	42	4	33	0	1	1	0	0	0
TMEM231	79583	ucsc.edu	37	16	75574034	75574034	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	42	4	32	0	12	12	0	0	0
PLD2	5338	ucsc.edu;bcgsc.ca	37	17	4726140	4726140	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	47	6	58	0	20	20	0	0	0
GP1BA	2811	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	4837738	4837738	+	Silent	SNP	A	A	G	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	176	75	194	1	7	5	2	0	0
ODF4	146852	broad.mit.edu	37	17	8243446	8243446	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	67	4	94	0	0	0	0	0	0
TVP23C	201158	ucsc.edu	37	17	15457087	15457087	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	443	62	365	46	66	6	60	0	0
FAM83G	644815	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	18881233	18881233	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	131	44	156	0	15	5	10	0	0
SLC47A1	55244	ucsc.edu	37	17	19449805	19449805	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	45	5	46	0	0	0	0	0	0
KSR1	8844	ucsc.edu	37	17	25909962	25909962	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	38	4	48	0	14	14	0	0	0
CDK5R1	8851	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	30815101	30815101	+	Silent	SNP	C	C	T	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	68	26	85	0	3	2	1	0	0
HOXB6	3216	ucsc.edu	37	17	46675550	46675550	+	RNA	SNP	G	G	T	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	18	4	16	0	1	1	0	0	0
TACO1	51204	bcgsc.ca	37	17	61685281	61685281	+	Silent	SNP	C	C	A	rs151139810	byfrequency;alternate_allele	TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	112	6	129	0	57	57	0	0	0
SDK2	54549	ucsc.edu	37	17	71361425	71361425	+	Silent	SNP	C	C	A	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	45	4	25	0	0	0	0	0	0
TBCD	6904	ucsc.edu	37	17	80887376	80887376	+	Silent	SNP	G	G	T	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	43	4	58	0	3	3	0	0	0
LAMA1	284217	ucsc.edu	37	18	7042185	7042185	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	37	4	33	0	0	0	0	0	0
SERPINB11	89778	ucsc.edu	37	18	61388200	61388200	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	32	4	23	0	0	0	0	0	0
CNDP2	55748	ucsc.edu;bcgsc.ca	37	18	72180832	72180832	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	53	5	62	0	1025	1025	0	0	0
MUM1	84939	ucsc.edu	37	19	1360739	1360739	+	Silent	SNP	C	C	A	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	29	4	33	0	27	27	0	0	0
PNPLA6	10908	ucsc.edu	37	19	7625961	7625961	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	31	4	34	0	92	92	0	0	0
ZNF558	148156	ucsc.edu	37	19	8923834	8923834	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	24	4	18	0	23	23	0	0	0
ZNF700	90592	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	12060395	12060395	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	66	33	88	0	20	9	11	0	0
CHERP	10523	hgsc.bcm.edu	37	19	16640580	16640580	+	Silent	SNP	T	T	C	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	49	4	46	2	6934	263	6670	0	1
PEPD	5184	ucsc.edu	37	19	33984207	33984207	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	34	4	36	0	0	0	0	0	0
ZNF567	163081	bcgsc.ca	37	19	37210706	37210706	+	Silent	SNP	G	G	T	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	80	6	86	0	17	14	0	3	0
CIC	23152	ucsc.edu	37	19	42795269	42795269	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	33	4	37	0	85	85	0	0	0
MARK4	57787	ucsc.edu	37	19	45762443	45762443	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	35	4	28	0	0	0	0	0	0
IL4I1	259307	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	50393785	50393785	+	Silent	SNP	C	C	T	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	50	21	42	0	17	11	6	0	0
ZNF615	284370	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	52496292	52496292	+	Silent	SNP	C	C	A	rs146634089	alternate_allele	TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	201	83	205	2	8	5	3	0	0
ZSCAN5A	79149	bcgsc.ca	37	19	56733046	56733046	+	Silent	SNP	G	G	T	rs202145068	alternate_allele	TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	92	6	85	0	8	8	0	0	0
TRIM28	10155	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	59057198	59057198	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	94	37	129	0	153	81	72	0	0
TRAPPC12	51112	hgsc.bcm.edu	37	2	3391827	3391827	+	Missense_Mutation	SNP	G	G	C	rs145175293	by1000genomes;alternate_allele	TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	4	4	2	1	5	0	5	0	0
KIF3C	3797	bcgsc.ca	37	2	26204634	26204634	+	Silent	SNP	C	C	A	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	193	10	197	0	4	4	0	0	0
LTBP1	4052	ucsc.edu	37	2	33498811	33498811	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	42	4	29	0	2	2	0	0	0
ABCG5	64240	ucsc.edu	37	2	44050017	44050017	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	43	4	43	0	0	0	0	0	0
STON1	11037	hgsc.bcm.edu;bcgsc.ca	37	2	48818889	48818889	+	Silent	SNP	C	C	A	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	129	7	138	0	1	1	0	0	0
SPRED2	200734	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	65561771	65561771	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	192	68	198	0	0	0	0	0	0
TEX261	113419	ucsc.edu	37	2	71219105	71219105	+	Silent	SNP	G	G	T	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	35	4	36	0	1	1	0	0	0
PRADC1	84279	ucsc.edu	37	2	73455924	73455924	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	39	4	40	0	0	0	0	0	0
ACTG2	72	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	74128513	74128513	+	Silent	SNP	T	T	C	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	95	32	69	1	0	0	0	0	0
LBX2	85474	ucsc.edu	37	2	74725074	74725074	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	42	4	34	0	12	12	0	0	0
CTNNA2	1496	ucsc.edu	37	2	80773176	80773176	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	34	4	29	0	0	0	0	0	0
SULT1C4	27233	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	108994906	108994906	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	315	134	289	0	293	135	158	0	0
GLI2	2736	bcgsc.ca	37	2	121748160	121748160	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	201	10	315	0	0	0	0	0	0
UBXN4	23190	ucsc.edu	37	2	136499550	136499550	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	42	4	32	0	99	99	0	0	0
RIF1	55183	ucsc.edu	37	2	152320735	152320735	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	42	4	47	0	22	22	0	0	0
TANC1	85461	bcgsc.ca	37	2	160076202	160076202	+	Splice_Site	SNP	G	G	T	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	126	8	142	0	1	1	0	0	0
CSRNP3	80034	ucsc.edu	37	2	166514474	166514474	+	Silent	SNP	C	C	A	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	55	5	53	0	0	0	0	0	0
G6PC2	57818	bcgsc.ca	37	2	169764399	169764399	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	200	8	188	0	0	0	0	0	0
LRP2	4036	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	170145584	170145584	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	142	41	136	0	0	0	0	0	0
TTN	7273	bcgsc.ca	37	2	179469794	179469794	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	211	8	202	0	1	1	0	0	0
CWC22	57703	bcgsc.ca	37	2	180810329	180810329	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	162	8	179	0	74	74	0	0	0
OBSL1	23363	ucsc.edu	37	2	220423050	220423050	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	28	4	27	0	30	30	0	0	0
PCNA	5111	ucsc.edu	37	20	5100226	5100226	+	Silent	SNP	G	G	T	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	32	4	17	0	1	1	0	0	0
DHX35	60625	ucsc.edu	37	20	37597731	37597731	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	41	5	56	0	0	0	0	0	0
CTSA	5476	ucsc.edu;bcgsc.ca	37	20	44527063	44527063	+	Missense_Mutation	SNP	C	C	A	rs147472210	alternate_allele	TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	33	5	37	0	632	632	0	0	0
KRTAP26-1	388818	hgsc.bcm.edu;broad.mit.edu	37	21	31692296	31692296	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	63	5	77	1	0	0	0	0	0
KRTAP13-4	284827	bcgsc.ca	37	21	31802639	31802639	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	220	12	223	0	0	0	0	0	0
C21orf59	56683	bcgsc.ca	37	21	33974661	33974661	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	84	7	87	0	183	183	0	0	0
PI4KA	5297	ucsc.edu	37	22	21068961	21068961	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	34	4	34	0	90	90	0	0	0
MYO18B	84700	ucsc.edu	37	22	26346380	26346380	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	28	4	26	0	0	0	0	0	0
PKDREJ	10343	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	46654232	46654232	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	110	43	94	1	0	0	0	0	0
MOV10L1	54456	ucsc.edu	37	22	50537894	50537894	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	39	4	59	0	0	0	0	0	0
TUBGCP6	85378	ucsc.edu	37	22	50659771	50659771	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	39	4	46	0	16	16	0	0	0
NCAPH2	29781	ucsc.edu	37	22	50957133	50957133	+	Silent	SNP	C	C	A	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	43	4	29	0	83	83	0	0	0
TBC1D5	9779	bcgsc.ca	37	3	17413739	17413739	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	69	7	65	0	0	0	0	0	0
EFHB	151651	bcgsc.ca	37	3	19974854	19974854	+	Silent	SNP	G	G	T	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	189	11	185	0	1	1	0	0	0
COL7A1	1294	ucsc.edu	37	3	48624655	48624655	+	Missense_Mutation	SNP	C	C	A	rs150873722	byfrequency;alternate_allele	TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	35	4	30	0	0	0	0	0	0
AMT	275	bcgsc.ca	37	3	49458983	49458983	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	193	9	164	0	37	37	0	0	0
NPRL2	10641	bcgsc.ca	37	3	50385784	50385784	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	89	9	75	0	29	29	0	0	0
STAB1	23166	ucsc.edu	37	3	52546617	52546617	+	Silent	SNP	G	G	T	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	55	6	68	0	0	0	0	0	0
ROBO1	6091	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	78683096	78683096	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	155	38	128	0	0	0	0	0	0
COL8A1	1295	bcgsc.ca	37	3	99514797	99514797	+	Silent	SNP	C	C	A	rs140332231	alternate_allele	TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	99	7	77	0	24	24	0	0	0
KIAA2018	205717	hgsc.bcm.edu	37	3	113376148	113376148	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	105	7	52	0	6	6	0	0	0
ADCY5	111	hgsc.bcm.edu;bcgsc.ca	37	3	123047579	123047579	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	189	11	151	0	25	25	0	0	0
ACAD9	28976	ucsc.edu	37	3	128614212	128614212	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	41	4	29	0	92	92	0	0	0
C3orf36	80111	ucsc.edu	37	3	133647364	133647364	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	32	4	26	0	0	0	0	0	0
SSR3	6747	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	156266708	156266708	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	116	26	77	0	4	3	1	0	0
SI	6476	ucsc.edu	37	3	164735617	164735617	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	42	4	41	0	0	0	0	0	0
SEL1L3	23231	bcgsc.ca	37	4	25835077	25835077	+	Silent	SNP	C	C	A	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	76	6	63	0	0	0	0	0	0
APBB2	323	ucsc.edu	37	4	41035253	41035253	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	36	4	35	0	0	0	0	0	0
SHROOM3	57619	bcgsc.ca	37	4	77357271	77357271	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	251	11	229	0	2	2	0	0	0
FRAS1	80144	ucsc.edu	37	4	79321911	79321911	+	Silent	SNP	G	G	T	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	52	5	42	0	12	12	0	0	0
FRAS1	80144	bcgsc.ca	37	4	79461754	79461754	+	Silent	SNP	C	C	A	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	78	6	71	0	11	11	0	0	0
HELQ	113510	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	84342848	84342848	+	Silent	SNP	A	A	G	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	61	26	58	0	9	4	5	0	0
BHMT	635	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	78415091	78415091	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	112	42	98	0	0	0	0	0	0
PGGT1B	5229	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	114573574	114573574	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	188	79	161	0	28	16	12	0	0
GDF9	2661	ucsc.edu	37	5	132197739	132197739	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	48	5	76	0	3	3	0	0	0
CATSPER3	347732	bcgsc.ca	37	5	134332201	134332201	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	140	8	112	0	0	0	0	0	0
SIL1	64374	ucsc.edu	37	5	138286865	138286865	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	37	4	18	0	0	0	0	0	0
TMCO6	55374	ucsc.edu	37	5	140021963	140021963	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	42	4	32	0	15	15	0	0	0
WDR55	54853	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	140049032	140049032	+	Silent	SNP	T	T	C	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	45	18	36	0	37	24	13	0	0
PCDHGC3	5098	hgsc.bcm.edu;bcgsc.ca	37	5	140856169	140856169	+	Silent	SNP	C	C	A	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	101	7	125	0	43	43	0	0	0
ARAP3	64411	ucsc.edu	37	5	141039405	141039405	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	42	4	49	0	1	1	0	0	0
FGFR4	2264	bcgsc.ca	37	5	176520312	176520312	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	123	7	142	0	72	72	0	0	0
FGFR4	2264	broad.mit.edu;ucsc.edu	37	5	176522539	176522539	+	Silent	SNP	C	C	T	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	13	3	17	0	0	0	0	0	0
BTNL3	10917	bcgsc.ca	37	5	180432590	180432590	+	Silent	SNP	C	C	A	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	115	8	141	1	0	0	0	0	0
ABHD16A	7920	ucsc.edu	37	6	31657481	31657481	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	42	4	51	0	4	4	0	0	0
SRPK1	6732	ucsc.edu	37	6	35825098	35825098	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	40	6	33	0	50	50	0	0	0
DAAM2	23500	ucsc.edu	37	6	39832260	39832260	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	25	4	39	0	0	0	0	0	0
MRPS18A	55168	ucsc.edu	37	6	43655468	43655468	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	24	4	17	0	59	58	0	1	0
RUNX2	860	hgsc.bcm.edu	37	6	45390482	45390482	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	41	3	53	0	1	1	0	0	0
LMBRD1	55788	bcgsc.ca	37	6	70409058	70409058	+	Silent	SNP	G	G	T	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	111	7	103	1	149	149	0	0	0
FAM46A	55603	bcgsc.ca	37	6	82459603	82459603	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	115	9	110	0	29	29	0	0	0
SNAP91	9892	bcgsc.ca	37	6	84417536	84417536	+	Silent	SNP	G	G	T	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	227	10	197	0	0	0	0	0	0
MDN1	23195	bcgsc.ca	37	6	90428867	90428867	+	Silent	SNP	G	G	T	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	81	7	49	0	0	0	0	0	0
REV3L	5980	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	111632330	111632330	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	267	91	258	0	32	20	12	0	0
RFPL4B	442247	ucsc.edu	37	6	112671170	112671170	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	66	6	70	0	0	0	0	0	0
SASH1	23328	ucsc.edu;bcgsc.ca	37	6	148848588	148848588	+	Splice_Site	SNP	G	G	T	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	62	7	58	0	0	0	0	0	0
FNDC1	84624	bcgsc.ca	37	6	159618642	159618642	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	176	9	171	0	0	0	0	0	0
BRAT1	221927	ucsc.edu	37	7	2584687	2584687	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	22	4	22	0	0	0	0	0	0
ACTB	60	broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	5567465	5567465	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	136	59	156	1	7075	3918	3155	2	0
NFE2L3	9603	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	26223344	26223347	+	Frame_Shift_Del	DEL	TTCT	TTCT	-	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	TTCT	TTCT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	129	39	110	0	0	0	0	0	0
ASL	435	ucsc.edu;bcgsc.ca	37	7	65547902	65547902	+	Silent	SNP	G	G	T	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	35	5	46	0	64	64	0	0	0
MET	4233	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	116423474	116423474	+	Missense_Mutation	SNP	T	T	C	rs121913245		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	61	25	61	0	495	254	241	0	0
LOC407835	0	ucsc.edu	37	7	128767041	128767041	+	RNA	SNP	G	G	T	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	13	1	16	0	254	3	251	0	0
ARHGEF5	7984	hgsc.bcm.edu	37	7	144060273	144060273	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	603	101	620	1	43	40	3	0	0
ATP6V0E2	155066	ucsc.edu	37	7	149576633	149576633	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	32	5	16	0	28	28	0	0	0
WDR60	55112	ucsc.edu	37	7	158723199	158723199	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	39	4	35	0	2	2	0	0	0
LOXL2	4017	bcgsc.ca	37	8	23156376	23156376	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	130	7	130	0	76	76	0	0	0
TACC1	6867	bcgsc.ca	37	8	38682884	38682884	+	Silent	SNP	C	C	A	rs199686968	alternate_allele	TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	134	7	100	0	0	0	0	0	0
SLC7A13	157724	bcgsc.ca	37	8	87226834	87226834	+	Silent	SNP	C	C	A	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	78	7	47	0	0	0	0	0	0
VPS13B	157680	bcgsc.ca	37	8	100533189	100533189	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	229	10	227	0	5	5	0	0	0
PLEC	5339	ucsc.edu	37	8	144992172	144992172	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	35	4	31	0	210	210	0	0	0
TOPORS	10210	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	32543270	32543270	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	140	59	156	0	38	22	16	0	0
SLC46A2	57864	ucsc.edu	37	9	115652349	115652349	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	38	4	51	0	0	0	0	0	0
TNC	3371	hgsc.bcm.edu	37	9	117808884	117808922	+	In_Frame_Del	DEL	CATCAGCTGTCCAGGACAGACGGAAACCGTCTGGGGTGG	CATCAGCTGTCCAGGACAGACGGAAACCGTCTGGGGTGG	-	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	CATCAGCTGTCCAGGACAGACGGAAACCGTCTGGGGTGG	CATCAGCTGTCCAGGACAGACGGAAACCGTCTGGGGTGG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	89	22	140	0	0	0	0	0	0
TLR4	7099	bcgsc.ca	37	9	120474840	120474840	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	93	7	73	0	10	10	0	0	0
DBC1	1620	ucsc.edu	37	9	121930466	121930466	+	Silent	SNP	G	G	T	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	25	4	26	0	14	14	0	0	0
SPTAN1	6709	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	131361264	131361264	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	129	57	131	0	1	1	0	0	0
SEC16A	9919	ucsc.edu	37	9	139368728	139368728	+	Missense_Mutation	SNP	G	G	T	rs202139249	alternate_allele	TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	23	4	20	0	27	27	0	0	0
AGPAT2	10555	bcgsc.ca	37	9	139581687	139581687	+	Silent	SNP	G	G	A	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	68	6	70	0	61	60	0	1	0
MXRA5	25878	ucsc.edu	37	X	3238104	3238104	+	Silent	SNP	G	G	T	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	40	5	64	0	2	2	0	0	0
CXorf21	80231	ucsc.edu	37	X	30578065	30578065	+	Silent	SNP	G	G	T	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	44	4	68	0	4	4	0	0	0
FAM47A	158724	ucsc.edu	37	X	34150360	34150360	+	Silent	SNP	G	G	T	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	40	4	53	0	0	0	0	0	0
BCOR	54880	ucsc.edu	37	X	39934344	39934344	+	Silent	SNP	C	C	A	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	38	4	35	0	15	15	0	0	0
RBM10	8241	ucsc.edu	37	X	47030446	47030446	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	21	4	32	0	28	28	0	0	0
KDM5C	8242	ucsc.edu	37	X	53247531	53247531	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	41	5	44	0	32	32	0	0	0
FAM120C	54954	ucsc.edu	37	X	54161310	54161310	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	39	4	37	0	8	8	0	0	0
ZC4H2	55906	ucsc.edu	37	X	64138935	64138935	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	43	4	66	0	0	0	0	0	0
EDA2R	60401	ucsc.edu	37	X	65824990	65824990	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	35	4	19	0	0	0	0	0	0
DLG3	1741	ucsc.edu	37	X	69720389	69720389	+	Silent	SNP	C	C	A	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	60	6	59	1	43	43	0	0	0
SLC7A3	84889	bcgsc.ca	37	X	70149809	70149809	+	Silent	SNP	C	C	A	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	97	7	71	0	0	0	0	0	0
BRWD3	254065	ucsc.edu	37	X	79932813	79932813	+	Silent	SNP	C	C	A	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	37	4	30	0	7	7	0	0	0
RAB33A	9363	ucsc.edu	37	X	129318425	129318425	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	40	4	41	0	0	0	0	0	0
RAB33A	9363	ucsc.edu	37	X	129318435	129318435	+	Silent	SNP	C	C	A	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	41	4	41	0	0	0	0	0	0
