Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	TTotCov	TVarCov	NTotCov	NVarCov	Trna_tot	Trna_ref	Trna_var	Trna_alt1	Trna_alt2
UBE2J2	118424	bcgsc.ca	37	1	1190786	1190786	+	Missense_Mutation	SNP	C	C	A	rs147742881	alternate_allele	TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	201	12	223	0	48	47	0	1	0
PLCH2	9651	bcgsc.ca	37	1	2420651	2420651	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	141	11	158	0	0	0	0	0	0
RPL22	6146	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	6246873	6246873	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	81	17	69	0	6	3	3	0	0
NOL9	79707	bcgsc.ca	37	1	6586006	6586006	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	146	8	143	0	0	0	0	0	0
CAMTA1	23261	bcgsc.ca	37	1	6880294	6880294	+	Silent	SNP	C	C	A	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	84	6	82	0	101	101	0	0	0
CLSTN1	22883	bcgsc.ca	37	1	9804028	9804028	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	152	8	161	0	21	21	0	0	0
KIF1B	23095	broad.mit.edu	37	1	10352150	10352150	+	Silent	SNP	A	A	G	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	197	4	155	0	0	0	0	0	0
TMCO4	255104	ucsc.edu;bcgsc.ca	37	1	20107081	20107081	+	Silent	SNP	G	G	T	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	63	6	48	0	0	0	0	0	0
KIF17	57576	ucsc.edu	37	1	20998685	20998685	+	Missense_Mutation	SNP	C	C	A	rs149211267	alternate_allele	TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	43	5	44	0	0	0	0	0	0
SLC30A2	7780	ucsc.edu	37	1	26370933	26370933	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	39	4	32	0	0	0	0	0	0
AIM1L	55057	ucsc.edu	37	1	26672852	26672852	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	35	4	56	0	0	0	0	0	0
ARID1A	8289	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	27094329	27094329	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	142	32	159	0	0	0	0	0	0
NR0B2	8431	bcgsc.ca	37	1	27239997	27239997	+	Silent	SNP	C	C	A	rs148569409	alternate_allele	TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	74	6	97	0	0	0	0	0	0
MAP3K6	9064	ucsc.edu	37	1	27683606	27683606	+	Splice_Site	SNP	C	C	A	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	39	4	39	0	6	6	0	0	0
DCDC2B	149069	bcgsc.ca	37	1	32674958	32674958	+	Silent	SNP	C	C	A	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	154	9	161	0	1	1	0	0	0
DPH2	1802	bcgsc.ca	37	1	44438128	44438128	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	110	7	127	1	6	6	0	0	0
TOE1	114034	ucsc.edu;bcgsc.ca	37	1	45808564	45808564	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	72	7	96	0	12	12	0	0	0
SLC44A5	204962	ucsc.edu	37	1	75740656	75740656	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	31	4	34	0	0	0	0	0	0
SNORD45C	692085	ucsc.edu	37	1	76252833	76252833	+	RNA	SNP	C	C	A	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	42	4	51	0	0	0	0	0	0
PDE4DIP	9659	hgsc.bcm.edu;broad.mit.edu	37	1	144856892	144856892	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	124	8	126	1	0	0	0	0	0
SEC22B	9554	broad.mit.edu	37	1	145112418	145112418	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	87	8	76	1	0	0	0	0	0
SPRR2C	6702	ucsc.edu	37	1	153112862	153112862	+	RNA	SNP	C	C	A	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	36	4	35	0	0	0	0	0	0
NPR1	4881	bcgsc.ca	37	1	153653694	153653694	+	Silent	SNP	C	C	A	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	146	9	151	0	8	8	0	0	0
INTS3	65123	bcgsc.ca	37	1	153719771	153719771	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	109	7	94	0	2	2	0	0	0
ADAR	103	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	154574720	154574720	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	102	25	150	0	4	3	1	0	0
FCRL4	83417	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	157559028	157559028	+	Silent	SNP	T	T	C	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	165	32	154	0	0	0	0	0	0
UFC1	51506	ucsc.edu	37	1	161127435	161127435	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	42	4	29	0	158	158	0	0	0
RXRG	6258	bcgsc.ca	37	1	165370562	165370562	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	157	10	148	1	0	0	0	0	0
TADA1	117143	ucsc.edu	37	1	166845447	166845447	+	Silent	SNP	C	C	A	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	62	6	43	0	1	1	0	0	0
MPZL1	9019	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	167745333	167745333	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	93	12	99	0	16	6	10	0	0
CACYBP	27101	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	174979129	174979129	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	68	17	60	0	61	36	25	0	0
RFWD2	64326	bcgsc.ca	37	1	176012404	176012404	+	Splice_Site	SNP	C	C	A	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	138	8	116	0	0	0	0	0	0
CACNA1E	777	ucsc.edu	37	1	181705570	181705570	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	23	4	20	0	0	0	0	0	0
RGS16	6004	ucsc.edu	37	1	182569597	182569597	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	126	1	130	0	4	4	0	0	0
HMCN1	83872	bcgsc.ca	37	1	186113833	186113833	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	123	8	105	0	0	0	0	0	0
PRG4	10216	ucsc.edu	37	1	186265991	186265991	+	RNA	SNP	G	G	T	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	48	5	31	0	0	0	0	0	0
CFH	3075	bcgsc.ca	37	1	196706029	196706029	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	56	6	35	0	0	0	0	0	0
GPR25	2848	ucsc.edu	37	1	200842754	200842754	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	35	5	42	0	1	1	0	0	0
NAV1	89796	hgsc.bcm.edu	37	1	201762968	201762968	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	99	5	88	0	0	0	0	0	0
PTPN14	5784	bcgsc.ca	37	1	214557726	214557726	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	335	14	350	0	0	0	0	0	0
PTPN14	5784	bcgsc.ca	37	1	214557918	214557918	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	227	11	207	0	0	0	0	0	0
PARP1	142	bcgsc.ca	37	1	226573223	226573223	+	Missense_Mutation	SNP	C	C	A	rs145545176	alternate_allele	TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	85	7	102	0	11	11	0	0	0
KIN	22944	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	7825098	7825098	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	61	8	49	0	6	4	2	0	0
YME1L1	10730	bcgsc.ca	37	10	27412570	27412570	+	Silent	SNP	C	C	A	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	203	9	168	0	2	2	0	0	0
BMS1	9790	ucsc.edu	37	10	43315737	43315737	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	141	7	125	4	38	19	19	0	0
CDH23	64072	ucsc.edu	37	10	73405652	73405652	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	50	5	43	0	0	0	0	0	0
MICU1	10367	ucsc.edu	37	10	74322762	74322762	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	37	4	38	0	10	10	0	0	0
MMRN2	79812	bcgsc.ca	37	10	88717143	88717143	+	Silent	SNP	G	G	T	rs150005124	byfrequency;alternate_allele	TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	194	11	202	1	0	0	0	0	0
PLCE1	51196	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	10	95849076	95849076	+	Silent	SNP	A	A	G	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	169	66	198	0	0	0	0	0	0
ALDH18A1	5832	bcgsc.ca	37	10	97388191	97388191	+	Silent	SNP	G	G	T	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	137	8	135	0	5	5	0	0	0
KCNIP2	30819	ucsc.edu	37	10	103587435	103587435	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	46	5	38	0	0	0	0	0	0
TMEM180	79847	ucsc.edu	37	10	104229783	104229783	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	41	4	61	0	0	0	0	0	0
EIF3A	8661	bcgsc.ca	37	10	120795729	120795729	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	125	7	110	0	64	64	0	0	0
MUC2	4583	ucsc.edu	37	11	1083146	1083146	+	Silent	SNP	C	C	A	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	43	4	51	0	0	0	0	0	0
INS	3630	bcgsc.ca	37	11	2182072	2182072	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	100	7	125	0	0	0	0	0	0
DENND5A	23258	ucsc.edu	37	11	9165785	9165785	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	59	6	81	0	19	19	0	0	0
MRVI1	10335	ucsc.edu	37	11	10631279	10631279	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	46	5	39	0	0	0	0	0	0
KIAA1549L	25758	bcgsc.ca	37	11	33564582	33564582	+	Silent	SNP	C	C	A	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	273	10	273	0	0	0	0	0	0
SEC14L1P1	729799	ucsc.edu	37	11	43920177	43920177	+	RNA	SNP	G	G	T	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	28	4	27	0	0	0	0	0	0
PTPRJ	5795	bcgsc.ca	37	11	48185078	48185078	+	Silent	SNP	C	C	A	rs138412658	alternate_allele	TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	132	11	111	0	3	3	0	0	0
C11orf31	280636	ucsc.edu	37	11	57509643	57509643	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	25	4	28	0	340	339	1	0	0
MPEG1	219972	bcgsc.ca	37	11	58978547	58978547	+	Silent	SNP	G	G	T	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	265	10	261	1	4	4	0	0	0
VPS37C	55048	ucsc.edu	37	11	60900783	60900783	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	51	6	58	0	7	7	0	0	0
BEST1	7439	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	61730354	61730354	+	Silent	SNP	C	C	T	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	91	13	103	0	0	0	0	0	0
INCENP	3619	ucsc.edu	37	11	61908267	61908267	+	Missense_Mutation	SNP	C	C	A	rs137984629	byfrequency;alternate_allele	TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	35	4	51	0	0	0	0	0	0
EEF1G	1937	bcgsc.ca	37	11	62327541	62327541	+	Silent	SNP	C	C	A	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	175	9	237	0	2	2	0	0	0
EML3	256364	bcgsc.ca	37	11	62372624	62372624	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	111	7	91	1	28	28	0	0	0
TMEM223	79064	ucsc.edu	37	11	62558154	62558154	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	27	4	20	0	94	94	0	0	0
SLC22A6	9356	ucsc.edu	37	11	62749455	62749455	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	42	4	57	0	3	3	0	0	0
RASGRP2	10235	ucsc.edu	37	11	64504329	64504329	+	Missense_Mutation	SNP	C	C	A	rs141060165	bycluster;byfrequency;by1000genomes;alternate_allele	TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	51	5	48	0	12	12	0	0	0
PYGM	5837	bcgsc.ca	37	11	64517913	64517913	+	Silent	SNP	C	C	A	rs61737361	bycluster;byfrequency;alternate_allele	TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	307	10	337	1	0	0	0	0	0
CDC42BPG	55561	ucsc.edu	37	11	64597529	64597529	+	Silent	SNP	C	C	A	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	32	4	47	0	0	0	0	0	0
CATSPER1	117144	ucsc.edu	37	11	65792911	65792911	+	Missense_Mutation	SNP	G	G	T	rs113730172	alternate_allele	TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	54	5	64	0	0	0	0	0	0
SYT12	91683	bcgsc.ca	37	11	66807673	66807673	+	Missense_Mutation	SNP	G	G	T	rs186492784	alternate_allele	TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	72	6	86	0	0	0	0	0	0
PPFIA1	8500	ucsc.edu	37	11	70228264	70228264	+	Splice_Site	SNP	G	G	T	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	32	4	28	0	3	3	0	0	0
ARAP1	116985	ucsc.edu	37	11	72410565	72410565	+	Missense_Mutation	SNP	C	C	A	rs147907020	alternate_allele	TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	29	4	29	0	13	13	0	0	0
STARD10	10809	ucsc.edu	37	11	72468817	72468817	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	53	5	62	0	0	0	0	0	0
MAML2	84441	hgsc.bcm.edu	37	11	95825431	95825431	+	Silent	SNP	T	T	C	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	6	3	5	0	2	2	0	0	0
DYNC2H1	79659	ucsc.edu	37	11	103041674	103041674	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	46	5	32	0	0	0	0	0	0
IFT46	56912	bcgsc.ca	37	11	118422526	118422526	+	Missense_Mutation	SNP	G	G	T	rs146758400	byfrequency;alternate_allele	TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	139	8	134	0	24	24	0	0	0
PHLDB1	23187	ucsc.edu	37	11	118485333	118485333	+	Silent	SNP	C	C	A	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	36	4	44	0	2	2	0	0	0
CRTAM	56253	bcgsc.ca	37	11	122726432	122726432	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	77	7	76	0	0	0	0	0	0
ARHGAP32	9743	ucsc.edu	37	11	128838846	128838846	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	29	4	26	0	13	13	0	0	0
PARP11	57097	hgsc.bcm.edu;bcgsc.ca	37	12	3921402	3921402	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	151	9	118	2	2	2	0	0	0
KCNA6	3742	bcgsc.ca	37	12	4920436	4920436	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	154	8	156	0	0	0	0	0	0
LRRC23	10233	bcgsc.ca	37	12	7015023	7015023	+	Silent	SNP	C	C	A	rs147166327	byfrequency;alternate_allele	TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	86	8	99	0	0	0	0	0	0
C12orf57	113246	broad.mit.edu;ucsc.edu	37	12	7055012	7055012	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	36	4	30	0	218	156	62	0	0
SLCO1B7	338821	bcgsc.ca	37	12	21196301	21196301	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	220	12	202	0	0	0	0	0	0
PYROXD1	79912	ucsc.edu	37	12	21590743	21590743	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	51	5	41	0	0	0	0	0	0
ABCC9	10060	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	21962862	21962862	+	Silent	SNP	G	G	A	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	127	24	94	0	2	2	0	0	0
C2CD5	9847	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	22666235	22666235	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	187	31	163	0	0	0	0	0	0
CAPRIN2	65981	hgsc.bcm.edu;bcgsc.ca	37	12	30886574	30886574	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	219	13	200	0	0	0	0	0	0
PUS7L	83448	ucsc.edu	37	12	44125508	44125508	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	38	4	31	0	0	0	0	0	0
ARID2	196528	bcgsc.ca	37	12	46246367	46246367	+	Silent	SNP	C	C	A	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	159	8	150	0	1	1	0	0	0
KRT85	3891	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	52761009	52761009	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	58	11	79	0	0	0	0	0	0
BAZ2A	11176	ucsc.edu	37	12	56993612	56993612	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	43	4	46	0	0	0	0	0	0
LRRIQ1	84125	bcgsc.ca	37	12	85450908	85450908	+	Silent	SNP	C	C	A	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	302	10	226	0	1	1	0	0	0
EEA1	8411	bcgsc.ca	37	12	93174056	93174056	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	108	8	78	0	0	0	0	0	0
SYCP3	50511	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	102127436	102127436	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	89	12	73	0	0	0	0	0	0
SSH1	54434	bcgsc.ca	37	12	109186110	109186110	+	Silent	SNP	C	C	A	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	113	8	127	0	1	1	0	0	0
FAM222A	84915	ucsc.edu	37	12	110206987	110206987	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	35	4	45	0	0	0	0	0	0
PLBD2	196463	ucsc.edu	37	12	113821909	113821909	+	Splice_Site	SNP	G	G	T	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	42	4	32	0	0	0	0	0	0
PITPNM2	57605	bcgsc.ca	37	12	123494534	123494534	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	210	10	229	1	2	2	0	0	0
TMEM132D	121256	ucsc.edu	37	12	130184783	130184783	+	Silent	SNP	C	C	A	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	34	4	49	0	0	0	0	0	0
USPL1	10208	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	31233386	31233386	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	110	20	92	0	25	15	10	0	0
FREM2	341640	ucsc.edu	37	13	39261957	39261957	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	30	4	20	0	0	0	0	0	0
TSC22D1	8848	bcgsc.ca	37	13	45149845	45149845	+	Silent	SNP	G	G	T	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	141	7	122	0	2	2	0	0	0
ITM2B	9445	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	48833064	48833064	+	Silent	SNP	A	A	G	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	83	13	54	0	5724	3938	1779	4	3
COL4A1	1282	bcgsc.ca	37	13	110830466	110830466	+	Silent	SNP	C	C	A	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	193	10	164	2	19	19	0	0	0
RPGRIP1	57096	ucsc.edu	37	14	21794183	21794183	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	41	4	65	0	0	0	0	0	0
SALL2	6297	ucsc.edu	37	14	21991800	21991800	+	Silent	SNP	G	G	T	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	45	4	83	1	0	0	0	0	0
MYH7	4625	ucsc.edu	37	14	23887579	23887579	+	Silent	SNP	G	G	T	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	52	5	85	0	0	0	0	0	0
NFATC4	4776	ucsc.edu	37	14	24842406	24842406	+	Silent	SNP	C	C	A	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	42	4	65	0	0	0	0	0	0
PELI2	57161	ucsc.edu	37	14	56755177	56755177	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	27	4	45	0	0	0	0	0	0
SYNE2	23224	ucsc.edu	37	14	64591884	64591884	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	48	5	55	0	2	2	0	0	0
SERPINA10	51156	bcgsc.ca	37	14	94756471	94756471	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	83	6	127	1	0	0	0	0	0
SERPINA11	256394	ucsc.edu	37	14	94909097	94909097	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	41	4	76	0	0	0	0	0	0
TECPR2	9895	bcgsc.ca	37	14	102916061	102916061	+	Silent	SNP	C	C	A	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	106	7	137	1	1	1	0	0	0
BRF1	2972	ucsc.edu;bcgsc.ca	37	14	105677603	105677603	+	Nonsense_Mutation	SNP	C	C	A	rs200441045	alternate_allele	TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	40	5	58	0	14	14	0	0	0
SNORD115-15	100033453	bcgsc.ca	37	15	25453169	25453173	+	RNA	DEL	GCTGT	GCTGT	-	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	GCTGT	GCTGT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	89	18	149	0	0	0	0	0	0
RYR3	6263	ucsc.edu	37	15	34152846	34152846	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	17	4	25	0	0	0	0	0	0
SPTBN5	51332	bcgsc.ca	37	15	42155940	42155940	+	Silent	SNP	G	G	T	rs201500312	alternate_allele	TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	136	8	149	0	0	0	0	0	0
TGM7	116179	ucsc.edu	37	15	43574285	43574285	+	Splice_Site	SNP	C	C	A	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	27	4	44	0	0	0	0	0	0
DUOX1	53905	ucsc.edu;bcgsc.ca	37	15	45427381	45427381	+	Silent	SNP	C	C	A	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	67	7	87	0	0	0	0	0	0
HMGN2P46	283651	ucsc.edu	37	15	45847960	45847960	+	RNA	SNP	C	C	A	rs139971473	alternate_allele	TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	37	4	73	0	4	4	0	0	0
ALDH1A2	8854	bcgsc.ca	37	15	58247450	58247450	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	123	7	176	0	0	0	0	0	0
NOX5	79400	ucsc.edu	37	15	69324104	69324104	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	28	4	52	0	1	1	0	0	0
PEAK1	0	broad.mit.edu;bcgsc.ca	37	15	77406883	77406886	+	Frame_Shift_Del	DEL	TCCC	TCCC	-	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	TCCC	TCCC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	31	9	49	0	0	0	0	0	0
IL16	3603	ucsc.edu	37	15	81572078	81572078	+	Silent	SNP	C	C	A	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	40	4	63	0	0	0	0	0	0
AGBL1	123624	ucsc.edu	37	15	87099471	87099471	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	42	4	37	0	0	0	0	0	0
UNC45A	55898	bcgsc.ca	37	15	91486151	91486151	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	199	10	213	0	0	0	0	0	0
SYNM	23336	bcgsc.ca	37	15	99670318	99670318	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	86	7	85	0	2	2	0	0	0
RHBDF1	64285	ucsc.edu	37	16	111807	111807	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	37	4	51	0	0	0	0	0	0
AXIN1	8312	ucsc.edu;bcgsc.ca	37	16	347840	347840	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	33	6	33	0	20	20	0	0	0
UNKL	64718	ucsc.edu	37	16	1417218	1417218	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	22	5	20	0	1	1	0	0	0
CLCN7	1186	ucsc.edu	37	16	1502802	1502802	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	24	4	18	0	6	6	0	0	0
RAB26	25837	ucsc.edu	37	16	2201894	2201894	+	Silent	SNP	C	C	A	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	52	5	49	0	6	6	0	0	0
NTAN1	123803	bcgsc.ca	37	16	15141375	15141375	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	131	10	131	0	25	25	0	0	0
SMG1	23049	ucsc.edu	37	16	18893556	18893556	+	Silent	SNP	C	C	A	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	41	4	32	0	1	1	0	0	0
ACSM5	54988	bcgsc.ca	37	16	20429394	20429394	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	76	7	87	0	4	4	0	0	0
ZP2	7783	hgsc.bcm.edu	37	16	21213523	21213523	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	60	3	44	0	0	0	0	0	0
COG7	91949	ucsc.edu	37	16	23421643	23421643	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	42	4	48	0	6	6	0	0	0
KIAA0556	23247	bcgsc.ca	37	16	27786282	27786282	+	Silent	SNP	C	C	A	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	122	8	139	1	2	2	0	0	0
ITGAM	3684	bcgsc.ca	37	16	31308954	31308954	+	Silent	SNP	C	C	A	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	107	6	139	0	3	3	0	0	0
NOD2	64127	bcgsc.ca	37	16	50746033	50746033	+	Silent	SNP	C	C	A	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	76	6	98	0	1	1	0	0	0
PLEKHG4	25894	ucsc.edu	37	16	67314281	67314281	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	43	4	81	0	0	0	0	0	0
EDC4	23644	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	67910484	67910484	+	Silent	SNP	G	G	A	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	78	15	71	0	0	0	0	0	0
SLC12A4	6560	ucsc.edu;bcgsc.ca	37	16	67983809	67983809	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	38	5	56	0	1	1	0	0	0
SMPD3	55512	ucsc.edu	37	16	68404791	68404791	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	37	4	34	0	0	0	0	0	0
FUK	197258	ucsc.edu;bcgsc.ca	37	16	70506467	70506467	+	Silent	SNP	C	C	A	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	41	6	54	0	16	16	0	0	0
C17orf97	400566	hgsc.bcm.edu	37	17	263688	263688	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	127	12	125	2	244	227	17	0	0
TRPV3	162514	ucsc.edu	37	17	3430171	3430171	+	Silent	SNP	C	C	A	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	25	4	27	0	0	0	0	0	0
GLP2R	9340	bcgsc.ca	37	17	9764494	9764494	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	232	10	213	0	0	0	0	0	0
ALKBH5	54890	broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	18111630	18111630	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	160	15	144	1	18	17	1	0	0
LLGL1	3996	ucsc.edu	37	17	18137722	18137722	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	37	4	39	0	0	0	0	0	0
FLII	2314	bcgsc.ca	37	17	18154189	18154189	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	203	10	163	1	29	29	0	0	0
MAP2K3	5606	ucsc.edu	37	17	21203878	21203878	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	41	4	29	0	13	13	0	0	0
FOXN1	8456	bcgsc.ca	37	17	26857815	26857815	+	Silent	SNP	C	C	A	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	152	8	109	0	0	0	0	0	0
PIGS	94005	ucsc.edu	37	17	26885511	26885511	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	62	6	44	0	7	7	0	0	0
SUPT6H	6830	ucsc.edu	37	17	27000491	27000491	+	Silent	SNP	C	C	A	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	48	5	45	0	2	2	0	0	0
ADAP2	55803	broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	29261209	29261209	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	73	16	53	0	0	0	0	0	0
ARGFXP2	503640	ucsc.edu	37	17	30478267	30478267	+	RNA	SNP	G	G	T	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	37	4	29	0	0	0	0	0	0
CCL11	6356	bcgsc.ca	37	17	32612839	32612839	+	Silent	SNP	C	C	A	rs185980467	alternate_allele	TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	300	12	308	0	3	3	0	0	0
LRRC37A11P	342666	broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	37188161	37188161	+	RNA	SNP	G	G	T	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	236	68	187	0	0	0	0	0	0
MED24	9862	ucsc.edu	37	17	38182945	38182945	+	Silent	SNP	G	G	T	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	43	5	30	0	36	36	0	0	0
FKBP10	60681	ucsc.edu	37	17	39975870	39975870	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	52	5	57	0	8	8	0	0	0
BRCA1	672	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	41244817	41244817	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	146	24	145	0	0	0	0	0	0
KIF18B	146909	ucsc.edu	37	17	43011946	43011946	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	36	4	33	0	0	0	0	0	0
WNT9B	7484	bcgsc.ca	37	17	44952529	44952529	+	Silent	SNP	C	C	A	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	301	10	288	0	0	0	0	0	0
NPEPPS	9520	hgsc.bcm.edu;broad.mit.edu	37	17	45668145	45668145	+	Silent	SNP	A	A	G	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	329	33	266	0	71	65	6	0	0
HOXB1	3211	hgsc.bcm.edu	37	17	46608021	46608021	+	Silent	SNP	C	C	A	rs145345040	byfrequency;alternate_allele	TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	113	6	141	1	0	0	0	0	0
B4GALNT2	124872	ucsc.edu	37	17	47210426	47210426	+	Silent	SNP	G	G	T	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	41	4	41	0	0	0	0	0	0
ABCC3	8714	bcgsc.ca	37	17	48735832	48735832	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	267	13	202	1	10	10	0	0	0
MSI2	124540	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	55754379	55754379	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	252	80	173	0	0	0	0	0	0
BCAS3	54828	bcgsc.ca	37	17	59161874	59161874	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	148	7	77	0	33	33	0	0	0
NACA2	342538	ucsc.edu	37	17	59668146	59668146	+	Silent	SNP	A	A	G	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	297	2	264	0	0	0	0	0	0
MRC2	9902	ucsc.edu	37	17	60759730	60759730	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	32	4	23	0	0	0	0	0	0
SLC39A11	201266	ucsc.edu	37	17	70645062	70645062	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	37	4	45	0	7	7	0	0	0
GPRC5C	55890	bcgsc.ca	37	17	72429836	72429836	+	Splice_Site	SNP	G	G	T	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	163	9	133	0	0	0	0	0	0
ARMC7	79637	ucsc.edu	37	17	73124793	73124793	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	60	6	45	0	9	9	0	0	0
EXOC7	23265	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	74081426	74081426	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	40	14	30	0	101	42	59	0	0
TMC6	11322	ucsc.edu	37	17	76118729	76118729	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	31	4	39	0	4	4	0	0	0
NOTUM	147111	ucsc.edu	37	17	79914782	79914782	+	Silent	SNP	C	C	A	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	34	4	48	0	0	0	0	0	0
CD7	924	bcgsc.ca	37	17	80274717	80274717	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	130	7	156	0	8	8	0	0	0
SMCHD1	23347	ucsc.edu	37	18	2784608	2784608	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	39	4	23	0	0	0	0	0	0
APCDD1	147495	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	10487626	10487626	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	95	15	135	0	0	0	0	0	0
ST8SIA5	29906	bcgsc.ca	37	18	44284579	44284579	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	296	13	264	0	0	0	0	0	0
MAPK4	5596	bcgsc.ca	37	18	48190784	48190784	+	Silent	SNP	C	C	A	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	118	7	116	1	0	0	0	0	0
CDH20	28316	ucsc.edu	37	18	59221689	59221689	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	27	4	35	0	0	0	0	0	0
ZNF516	9658	ucsc.edu	37	18	74154840	74154840	+	Silent	SNP	C	C	A	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	41	4	48	0	0	0	0	0	0
SALL3	27164	ucsc.edu	37	18	76753416	76753416	+	Silent	SNP	C	C	A	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	33	5	45	0	0	0	0	0	0
ABCA7	10347	bcgsc.ca	37	19	1043767	1043767	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	263	10	354	0	1	1	0	0	0
PCSK4	54760	ucsc.edu	37	19	1489818	1489818	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	26	4	21	0	2	2	0	0	0
BTBD2	55643	ucsc.edu	37	19	1993169	1993169	+	Silent	SNP	G	G	T	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	56	5	57	0	0	0	0	0	0
ZNF555	148254	bcgsc.ca	37	19	2852706	2852706	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	131	9	115	0	3	3	0	0	0
FZR1	51343	ucsc.edu	37	19	3534452	3534452	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	37	4	41	0	38	38	0	0	0
PTPRS	5802	ucsc.edu;bcgsc.ca	37	19	5214456	5214456	+	Silent	SNP	C	C	A	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	59	6	62	0	7	7	0	0	0
KHSRP	8570	ucsc.edu	37	19	6416587	6416587	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	39	4	55	0	15	15	0	0	0
VAV1	7409	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	6833546	6833546	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	203	25	167	0	0	0	0	0	0
XAB2	56949	bcgsc.ca	37	19	7688621	7688621	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	93	8	102	0	0	0	0	0	0
TRAPPC5	126003	ucsc.edu	37	19	7747430	7747430	+	Silent	SNP	C	C	A	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	32	5	30	0	1	1	0	0	0
ICAM4	3386	ucsc.edu	37	19	10397963	10397963	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	32	4	48	0	5	5	0	0	0
HOOK2	29911	bcgsc.ca	37	19	12874385	12874385	+	Missense_Mutation	SNP	C	C	A	rs201745213	alternate_allele	TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	406	14	412	0	11	11	0	0	0
CACNA1A	773	ucsc.edu	37	19	13386718	13386718	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	47	5	43	0	0	0	0	0	0
NOTCH3	4854	ucsc.edu	37	19	15272413	15272413	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	33	4	44	0	4	4	0	0	0
ZNF429	353088	ucsc.edu	37	19	21720536	21720536	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	43	4	59	0	32	30	0	2	0
ZNF507	22847	ucsc.edu	37	19	32873683	32873683	+	Silent	SNP	C	C	A	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	75	7	87	1	0	0	0	0	0
PEPD	5184	ucsc.edu	37	19	34003548	34003548	+	Missense_Mutation	SNP	C	C	A	rs199892951	alternate_allele	TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	49	5	58	0	27	27	0	0	0
RBM42	79171	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	36128157	36128157	+	Silent	SNP	G	G	A	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	88	14	79	1	213	103	110	0	0
ZBTB32	27033	ucsc.edu	37	19	36206004	36206004	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	37	4	56	0	0	0	0	0	0
FCGBP	8857	ucsc.edu	37	19	40354526	40354526	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	43	4	46	0	0	0	0	0	0
SPTBN4	57731	ucsc.edu	37	19	40978602	40978602	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	40	4	33	0	0	0	0	0	0
SPTBN4	57731	ucsc.edu	37	19	41062003	41062003	+	Silent	SNP	C	C	A	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	32	4	30	0	1	1	0	0	0
HNRNPUL1	11100	bcgsc.ca	37	19	41807610	41807610	+	Splice_Site	SNP	G	G	C	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	61	8	62	0	2	2	0	0	0
CEACAM7	1087	ucsc.edu	37	19	42192077	42192077	+	Silent	SNP	G	G	T	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	57	7	88	0	0	0	0	0	0
CEACAM1	634	bcgsc.ca	37	19	43031475	43031475	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	229	11	257	1	0	0	0	0	0
IRGC	56269	hgsc.bcm.edu	37	19	44223048	44223048	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	38	2	50	2	0	0	0	0	0
MARK4	57787	bcgsc.ca	37	19	45783659	45783659	+	Missense_Mutation	SNP	G	G	T	rs147096694	byfrequency;alternate_allele	TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	210	10	240	0	8	8	0	0	0
ERCC2	2068	ucsc.edu	37	19	45873458	45873458	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	64	6	72	1	2	2	0	0	0
ERCC1	2067	hgsc.bcm.edu	37	19	45926544	45926544	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	41	3	37	0	18	18	0	0	0
STRN4	29888	ucsc.edu	37	19	47230771	47230771	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	39	4	46	0	12	12	0	0	0
MAMSTR	284358	ucsc.edu	37	19	49216662	49216662	+	Silent	SNP	C	C	A	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	42	4	49	0	2	1	0	1	0
ALDH16A1	126133	bcgsc.ca	37	19	49967137	49967137	+	Silent	SNP	G	G	T	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	357	13	397	3	18	18	0	0	0
PPP2R1A	5518	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	52724382	52724382	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	180	43	211	2	0	0	0	0	0
ZNF132	7691	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	58945194	58945194	+	Silent	SNP	T	T	A	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	112	22	107	0	0	0	0	0	0
LOC100131691	0	bcgsc.ca	37	19	59080622	59080622	+	RNA	SNP	C	C	A	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	103	7	93	0	0	0	0	0	0
GREB1	9687	bcgsc.ca	37	2	11756801	11756801	+	Missense_Mutation	SNP	C	C	A	rs182570976	alternate_allele	TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	201	8	297	0	0	0	0	0	0
XDH	7498	bcgsc.ca	37	2	31595113	31595113	+	Silent	SNP	G	G	T	rs201668777	alternate_allele	TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	235	10	245	0	0	0	0	0	0
SLC4A5	57835	bcgsc.ca	37	2	74466593	74466593	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	117	7	133	0	0	0	0	0	0
ELMOD3	84173	bcgsc.ca	37	2	85617291	85617291	+	Silent	SNP	C	C	A	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	73	6	105	0	8	8	0	0	0
POLR1A	25885	ucsc.edu;bcgsc.ca	37	2	86307951	86307951	+	Silent	SNP	G	G	T	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	61	6	55	0	0	0	0	0	0
SMYD1	150572	bcgsc.ca	37	2	88367503	88367503	+	Silent	SNP	C	C	A	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	180	8	219	0	0	0	0	0	0
ZC3H6	376940	ucsc.edu	37	2	113082673	113082673	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	49	5	67	1	1	1	0	0	0
ABCB11	8647	ucsc.edu	37	2	169814521	169814521	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	62	6	50	0	0	0	0	0	0
TTN	7273	bcgsc.ca	37	2	179449161	179449161	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	146	8	114	1	0	0	0	0	0
TTN	7273	ucsc.edu	37	2	179529597	179529597	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	40	4	42	0	0	0	0	0	0
ABCA12	26154	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	215865500	215865500	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	183	41	166	0	0	0	0	0	0
C2orf62	375307	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	219222364	219222364	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	93	16	103	0	8	8	0	0	0
ZNF142	7701	hgsc.bcm.edu;bcgsc.ca	37	2	219509115	219509115	+	Silent	SNP	A	A	T	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	65	12	91	0	1	1	0	0	0
SPEG	10290	ucsc.edu	37	2	220348803	220348803	+	Silent	SNP	C	C	A	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	53	5	58	0	0	0	0	0	0
SP100	6672	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	231338157	231338157	+	Splice_Site	DEL	T	T	-	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	135	23	126	0	0	0	0	0	0
COL6A3	1293	ucsc.edu	37	2	238275795	238275795	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	42	4	41	0	0	0	0	0	0
COL6A3	1293	bcgsc.ca	37	2	238285585	238285585	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	201	12	190	2	1	1	0	0	0
SIGLEC1	6614	bcgsc.ca	37	20	3672817	3672817	+	Silent	SNP	G	G	T	rs149916347	alternate_allele	TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	85	6	116	0	0	0	0	0	0
SEC23B	10483	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	18496315	18496315	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	102	14	103	0	4	2	2	0	0
PLAGL2	5326	ucsc.edu	37	20	30784429	30784429	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	28	4	40	0	5	5	0	0	0
SEMG2	6407	ucsc.edu	37	20	43851139	43851139	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	49	5	60	0	0	0	0	0	0
CASS4	57091	ucsc.edu;bcgsc.ca	37	20	55021037	55021037	+	Silent	SNP	C	C	A	rs148553170	alternate_allele	TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	53	6	54	0	0	0	0	0	0
LAMA5	3911	ucsc.edu	37	20	60937470	60937470	+	Missense_Mutation	SNP	G	G	T	rs201781930		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	50	5	40	0	0	0	0	0	0
SLC17A9	63910	ucsc.edu	37	20	61591856	61591856	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	46	5	48	0	0	0	0	0	0
COL20A1	57642	ucsc.edu	37	20	61945129	61945129	+	Silent	SNP	C	C	A	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	36	5	27	0	0	0	0	0	0
COL20A1	57642	ucsc.edu	37	20	61950486	61950486	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	53	5	70	0	0	0	0	0	0
GRIK1	2897	bcgsc.ca	37	21	30963542	30963542	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	122	8	120	0	0	0	0	0	0
TIAM1	7074	bcgsc.ca	37	21	32526661	32526661	+	Silent	SNP	C	C	A	rs150431101	alternate_allele	TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	136	7	158	0	0	0	0	0	0
LOC100133286	0	ucsc.edu	37	21	37443367	37443367	+	RNA	SNP	G	G	T	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	29	4	50	0	0	0	0	0	0
SIM2	6493	ucsc.edu	37	21	38114034	38114034	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	32	4	39	0	0	0	0	0	0
DSCR10	259234	bcgsc.ca	37	21	39580476	39580476	+	RNA	SNP	C	C	A	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	393	15	477	0	0	0	0	0	0
DIP2A	23181	ucsc.edu	37	21	47931475	47931475	+	Silent	SNP	C	C	A	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	40	4	44	0	0	0	0	0	0
SCARF2	91179	bcgsc.ca	37	22	20783544	20783544	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	70	6	98	0	3	3	0	0	0
LOC96610	0	broad.mit.edu	37	22	22663086	22663086	+	RNA	SNP	T	T	G	rs71318762	alternate_allele	TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	70	5	50	1	1	1	0	0	0
GNAZ	2781	ucsc.edu	37	22	23465467	23465467	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	42	4	71	0	5	5	0	0	0
INPP5J	27124	ucsc.edu	37	22	31523393	31523393	+	Silent	SNP	C	C	A	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	41	5	41	0	1	1	0	0	0
LARGE	9215	bcgsc.ca	37	22	33673105	33673105	+	Silent	SNP	G	G	T	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	159	8	145	1	5	5	0	0	0
LARGE	9215	bcgsc.ca	37	22	33700319	33700319	+	Silent	SNP	G	G	T	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	173	11	182	1	2	2	0	0	0
RPL3	6122	ucsc.edu	37	22	39711372	39711372	+	Splice_Site	SNP	A	A	C	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	138	1	171	0	0	0	0	0	0
SREBF2	6721	ucsc.edu	37	22	42264741	42264741	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	36	4	54	0	0	0	0	0	0
PLXNB2	23654	ucsc.edu	37	22	50717068	50717068	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	30	4	34	0	191	191	0	0	0
ADM2	79924	ucsc.edu	37	22	50921252	50921252	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	40	4	29	0	18	18	0	0	0
TRNT1	51095	ucsc.edu	37	3	3178958	3178958	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	57	5	53	0	5	5	0	0	0
LRRN1	57633	bcgsc.ca	37	3	3886461	3886461	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	202	11	174	0	0	0	0	0	0
XPC	7508	ucsc.edu	37	3	14190224	14190224	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	43	4	66	0	0	0	0	0	0
SUSD5	26032	ucsc.edu	37	3	33255598	33255598	+	Splice_Site	SNP	C	C	A	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	38	4	40	0	0	0	0	0	0
SLC25A38	54977	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	39431018	39431018	+	Silent	SNP	C	C	T	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	116	27	126	0	12	9	3	0	0
PTPN23	25930	ucsc.edu	37	3	47451761	47451761	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	29	4	28	0	7	7	0	0	0
IMPDH2	3615	ucsc.edu	37	3	49065306	49065306	+	Missense_Mutation	SNP	G	G	T	rs142797363	alternate_allele	TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	53	5	57	0	42	42	0	0	0
HEMK1	51409	ucsc.edu	37	3	50609551	50609551	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	41	4	50	0	1	1	0	0	0
GPR62	118442	ucsc.edu;bcgsc.ca	37	3	51990636	51990636	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	37	6	59	0	1	1	0	0	0
ITIH3	3699	ucsc.edu	37	3	52829632	52829632	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	33	4	31	0	0	0	0	0	0
PDZRN3	23024	bcgsc.ca	37	3	73453397	73453397	+	Silent	SNP	C	C	A	rs199688323	alternate_allele	TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	118	7	132	0	4	4	0	0	0
CRYBG3	131544	ucsc.edu	37	3	97600040	97600040	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	64	6	78	0	0	0	0	0	0
LNP1	348801	broad.mit.edu	37	3	100148586	100148588	+	In_Frame_Del	DEL	GAT	GAT	-	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	GAT	GAT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	830	8	659	0	0	0	0	0	0
PLCXD2	257068	bcgsc.ca	37	3	111426974	111426974	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	156	10	149	0	0	0	0	0	0
CCDC80	151887	bcgsc.ca	37	3	112324389	112324389	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	115	8	95	0	28	28	0	0	0
ADCY5	111	ucsc.edu	37	3	123166333	123166333	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	36	5	51	0	1	1	0	0	0
PLXND1	23129	ucsc.edu	37	3	129284741	129284741	+	Silent	SNP	C	C	A	rs199930186	alternate_allele	TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	39	4	64	0	0	0	0	0	0
SLC25A36	55186	bcgsc.ca	37	3	140682039	140682039	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	111	8	62	0	1	1	0	0	0
BCHE	590	bcgsc.ca	37	3	165548334	165548334	+	Missense_Mutation	SNP	C	C	A	rs141243848	alternate_allele	TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	86	6	91	0	1	1	0	0	0
TNFSF10	8743	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	172232704	172232704	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	176	41	130	0	225	141	84	0	0
HTR3E	285242	bcgsc.ca	37	3	183823111	183823111	+	Silent	SNP	C	C	A	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	70	6	83	0	0	0	0	0	0
AP2M1	1173	bcgsc.ca	37	3	183899576	183899576	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	128	8	115	0	163	163	0	0	0
CLCN2	1181	ucsc.edu	37	3	184075021	184075021	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	37	4	69	0	1	1	0	0	0
LOC220729	0	broad.mit.edu	37	3	197348674	197348674	+	RNA	SNP	A	A	G	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	120	4	133	1	31	31	0	0	0
CTBP1	1487	ucsc.edu;bcgsc.ca	37	4	1209966	1209966	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	39	5	51	0	113	113	0	0	0
ACOX3	8310	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	4	8372681	8372681	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	59	12	68	0	16	4	12	0	0
BOD1L1	259282	broad.mit.edu	37	4	13616069	13616069	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	34	7	30	0	1	0	1	0	0
N4BP2	55728	bcgsc.ca	37	4	40154443	40154443	+	Silent	SNP	G	G	T	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	76	6	84	0	1	1	0	0	0
TMEM33	55161	ucsc.edu	37	4	41937527	41937527	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	25	4	19	0	12	12	0	0	0
BEND4	389206	ucsc.edu	37	4	42119601	42119601	+	Silent	SNP	C	C	A	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	36	4	28	0	0	0	0	0	0
CENPC1	1060	ucsc.edu	37	4	68380402	68380402	+	Silent	SNP	G	G	T	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	31	4	19	0	0	0	0	0	0
CENPC1	1060	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	68385012	68385012	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	138	36	106	0	0	0	0	0	0
RNF150	57484	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	141832440	141832440	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	111	14	105	0	0	0	0	0	0
PRMT10	90826	bcgsc.ca	37	4	148594115	148594115	+	Silent	SNP	G	G	T	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	139	7	110	0	0	0	0	0	0
SNX25	83891	bcgsc.ca	37	4	186260610	186260610	+	Silent	SNP	G	G	T	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	79	6	50	0	1	1	0	0	0
SDHA	6389	bcgsc.ca	37	5	223624	223624	+	Silent	SNP	C	C	A	rs142441643	byfrequency;alternate_allele	TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	205	9	156	1	12	12	0	0	0
AHRR	57491	ucsc.edu	37	5	434020	434020	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	33	4	38	0	0	0	0	0	0
DNAH5	1767	broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	13928214	13928214	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	102	18	84	0	0	0	0	0	0
WDR70	55100	bcgsc.ca	37	5	37725064	37725064	+	Silent	SNP	C	C	A	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	207	11	201	1	25	25	0	0	0
SREK1	140890	ucsc.edu	37	5	65474670	65474670	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	39	4	40	0	6	6	0	0	0
ERAP2	64167	ucsc.edu	37	5	96215753	96215753	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	42	4	49	0	6	6	0	0	0
YTHDC2	64848	ucsc.edu	37	5	112849755	112849755	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	35	5	29	0	0	0	0	0	0
MEGF10	84466	bcgsc.ca	37	5	126676233	126676233	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	157	7	157	0	0	0	0	0	0
PCDHGA8	9708	broad.mit.edu	37	5	140772927	140772927	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	74	8	80	0	0	0	0	0	0
SH3RF2	153769	ucsc.edu	37	5	145379885	145379885	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	50	5	65	0	0	0	0	0	0
WWC1	23286	ucsc.edu	37	5	167887746	167887746	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	50	5	43	0	0	0	0	0	0
DOK3	79930	bcgsc.ca	37	5	176931623	176931623	+	Silent	SNP	C	C	A	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	30	5	50	0	3	3	0	0	0
LRRC16A	55604	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	25600730	25600730	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	85	25	113	2	3	2	1	0	0
SCAND3	114821	bcgsc.ca	37	6	28554157	28554157	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	226	11	255	0	0	0	0	0	0
HLA-F	3134	ucsc.edu	37	6	29692860	29692860	+	Silent	SNP	C	C	T	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	70	1	87	0	6928	6913	6	6	3
HLA-F	3134	ucsc.edu	37	6	29692866	29692866	+	Silent	SNP	G	G	A	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	70	1	89	0	6379	6368	3	4	4
HLA-J	3137	bcgsc.ca	37	6	29977024	29977024	+	RNA	SNP	C	C	A	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	102	18	96	3	1	0	1	0	0
HLA-J	3137	bcgsc.ca	37	6	29977056	29977056	+	RNA	SNP	C	C	T	rs199575903		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	115	19	116	3	13	1	11	1	0
C2	717	ucsc.edu	37	6	31895861	31895861	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	41	4	52	0	2	2	0	0	0
TNXB	7148	ucsc.edu	37	6	32064710	32064710	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	32	4	43	0	0	0	0	0	0
DNAH8	1769	broad.mit.edu;bcgsc.ca	37	6	38843585	38843585	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	48	7	67	0	0	0	0	0	0
KLC4	89953	broad.mit.edu;ucsc.edu	37	6	43042368	43042368	+	Silent	SNP	G	G	T	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	80	10	108	2	0	0	0	0	0
LMBRD1	55788	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	70462182	70462182	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	77	16	71	0	6	3	3	0	0
ANKRD6	22881	ucsc.edu	37	6	90340447	90340447	+	Silent	SNP	C	C	A	rs61739328	byfrequency;alternate_allele	TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	38	4	61	0	15	15	0	0	0
SYNE1	23345	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	152673335	152673335	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	261	44	217	0	0	0	0	0	0
SNX8	29886	bcgsc.ca	37	7	2311600	2311600	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	114	9	84	0	1	1	0	0	0
RAC1	5879	bcgsc.ca	37	7	6439811	6439811	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	172	8	153	0	1	1	0	0	0
COL28A1	340267	bcgsc.ca	37	7	7546793	7546793	+	Splice_Site	SNP	C	C	A	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	188	9	157	1	0	0	0	0	0
ANKMY2	57037	ucsc.edu	37	7	16676022	16676022	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	36	4	26	0	1	1	0	0	0
HOXA5	3202	bcgsc.ca	37	7	27181603	27181603	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	202	9	190	0	11	11	0	0	0
CREB5	9586	hgsc.bcm.edu	37	7	28843906	28843906	+	Silent	SNP	C	C	A	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	79	6	85	0	1	1	0	0	0
AEBP1	165	ucsc.edu	37	7	44150819	44150819	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	39	4	40	0	14	13	0	0	1
POLD2	5425	ucsc.edu	37	7	44156808	44156808	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	54	5	48	0	62	62	0	0	0
PKD1L1	168507	hgsc.bcm.edu;bcgsc.ca	37	7	47898372	47898372	+	Missense_Mutation	SNP	C	C	A	rs146609164	byfrequency;alternate_allele	TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	121	7	98	0	0	0	0	0	0
ABCA13	154664	ucsc.edu	37	7	48392066	48392066	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	27	4	33	0	0	0	0	0	0
ABCA13	154664	bcgsc.ca	37	7	48556448	48556448	+	Silent	SNP	C	C	A	rs79049908	alternate_allele	TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	214	10	205	0	0	0	0	0	0
ZNF679	168417	ucsc.edu	37	7	63726969	63726969	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	30	4	71	0	89	85	0	4	0
TMEM248	55069	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	66410208	66410208	+	Silent	SNP	T	T	C	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	247	43	244	0	22	11	11	0	0
COL1A2	1278	ucsc.edu	37	7	94041389	94041389	+	Missense_Mutation	SNP	G	G	T	rs72658117		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	35	4	33	0	0	0	0	0	0
DOCK4	9732	hgsc.bcm.edu	37	7	111387432	111387432	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	40	2	53	0	0	0	0	0	0
ING3	54556	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	120595620	120595620	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	36	5	30	0	0	0	0	0	0
KLHDC10	23008	bcgsc.ca	37	7	129770530	129770530	+	Silent	SNP	C	C	A	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	146	8	176	0	4	4	0	0	0
WEE2	494551	bcgsc.ca	37	7	141418905	141418905	+	Missense_Mutation	SNP	C	C	A	rs200326581	alternate_allele	TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	137	7	110	0	0	0	0	0	0
SSPO	23145	ucsc.edu	37	7	149473155	149473155	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	48	5	37	0	0	0	0	0	0
MCPH1	79648	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	6302006	6302006	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	89	23	89	0	2	2	0	0	0
TTI2	80185	bcgsc.ca	37	8	33369626	33369626	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	187	9	200	0	2	1	0	1	0
ADAM18	8749	ucsc.edu	37	8	39496029	39496029	+	Silent	SNP	C	C	A	rs12708194	byfrequency;alternate_allele	TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	62	6	50	0	0	0	0	0	0
IKBKB	3551	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	42173753	42173753	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	48	10	68	0	2	2	0	0	0
NPBWR1	2831	ucsc.edu	37	8	53852774	53852774	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	44	4	39	0	0	0	0	0	0
TGS1	96764	bcgsc.ca	37	8	56715135	56715135	+	Missense_Mutation	SNP	C	C	A	rs146432669	alternate_allele	TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	116	9	93	0	3	3	0	0	0
CYP7A1	1581	hgsc.bcm.edu;bcgsc.ca	37	8	59409487	59409487	+	Missense_Mutation	SNP	C	C	A	rs201046553	alternate_allele	TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	176	9	163	0	0	0	0	0	0
KHDRBS3	10656	bcgsc.ca	37	8	136569781	136569781	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	121	9	121	1	8	8	0	0	0
TIGD5	84948	ucsc.edu	37	8	144681839	144681839	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	41	5	44	0	13	13	0	0	0
MAPK15	225689	ucsc.edu	37	8	144804021	144804021	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	52	5	63	0	44	44	0	0	0
FBXL6	26233	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	145579793	145579793	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	156	30	181	0	27	16	11	0	0
FREM1	158326	bcgsc.ca	37	9	14842487	14842487	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	175	8	182	2	0	0	0	0	0
CCL27	10850	ucsc.edu	37	9	34662306	34662306	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	39	5	68	1	0	0	0	0	0
FRMPD1	22844	ucsc.edu	37	9	37744703	37744703	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	37	4	60	0	0	0	0	0	0
ROR2	4920	ucsc.edu;bcgsc.ca	37	9	94486693	94486693	+	Missense_Mutation	SNP	C	C	A	rs34431454	byfrequency;alternate_allele	TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	50	5	61	0	0	0	0	0	0
IPPK	64768	ucsc.edu	37	9	95397560	95397560	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	42	4	73	0	5	5	0	0	0
LOC441455	0	ucsc.edu	37	9	99489443	99489443	+	RNA	SNP	G	G	T	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	42	4	47	0	0	0	0	0	0
SVEP1	79987	broad.mit.edu	37	9	113198779	113198779	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	24	6	47	0	0	0	0	0	0
MIR3134	100422990	bcgsc.ca	37	9	115060724	115060724	+	RNA	SNP	T	T	C	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	10	6	21	0	0	0	0	0	0
FKBP15	23307	ucsc.edu	37	9	115928426	115928426	+	Nonsense_Mutation	SNP	C	C	A	rs200575573	alternate_allele	TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	33	4	23	0	0	0	0	0	0
TNC	3371	ucsc.edu	37	9	117848800	117848800	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	40	4	88	0	0	0	0	0	0
KIAA1984	84960	ucsc.edu	37	9	139699827	139699827	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	39	5	47	0	0	0	0	0	0
ARSE	415	ucsc.edu	37	X	2867559	2867559	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	45	5	43	0	38	38	0	0	0
MXRA5	25878	ucsc.edu	37	X	3228045	3228045	+	Silent	SNP	G	G	T	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	49	5	69	0	1	1	0	0	0
PRKX	5613	ucsc.edu	37	X	3592801	3592801	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	50	4	91	0	0	0	0	0	0
STS	412	ucsc.edu;bcgsc.ca	37	X	7175524	7175524	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	92	9	72	0	1	1	0	0	0
FAM47C	442444	ucsc.edu	37	X	37026664	37026664	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	46	5	53	0	0	0	0	0	0
SRPX	8406	ucsc.edu	37	X	38019378	38019378	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	41	4	29	0	3	3	0	0	0
ZNF182	7569	ucsc.edu	37	X	47835852	47835852	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	42	4	45	0	3	3	0	0	0
GATA1	2623	ucsc.edu	37	X	48649562	48649562	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	32	4	23	0	0	0	0	0	0
HUWE1	10075	ucsc.edu	37	X	53620512	53620512	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	39	4	40	0	0	0	0	0	0
WNK3	65267	ucsc.edu	37	X	54337686	54337686	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	36	4	42	0	0	0	0	0	0
OPHN1	4983	ucsc.edu	37	X	67272395	67272395	+	Silent	SNP	G	G	T	rs148208753	alternate_allele	TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	13	4	18	0	0	0	0	0	0
MED12	9968	ucsc.edu	37	X	70352252	70352252	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	43	4	37	0	1	1	0	0	0
RPS6KA6	27330	ucsc.edu	37	X	83400551	83400551	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	30	5	19	0	0	0	0	0	0
GPRASP2	114928	ucsc.edu	37	X	101970918	101970918	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	39	4	55	0	0	0	0	0	0
HS6ST2	90161	ucsc.edu	37	X	131762948	131762948	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	32	4	36	0	0	0	0	0	0
MAGEA8	4107	bcgsc.ca	37	X	149013419	149013419	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	85	7	112	0	0	0	0	0	0
PNMA3	29944	ucsc.edu	37	X	152225777	152225777	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	43	4	53	1	0	0	0	0	0
PLXNB3	5365	ucsc.edu	37	X	153037064	153037064	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	24	4	34	0	0	0	0	0	0
TRAF5	7188	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	211545951	211545952	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	118	20	118	0	0	0	0	0	0
TEKT1	83659	broad.mit.edu;bcgsc.ca	37	17	6718552	6718553	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	249	36	195	0	0	0	0	0	0
SLC22A13	9390	broad.mit.edu;bcgsc.ca	37	3	38307615	38307616	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	48	7	66	0	0	0	0	0	0
