Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	TTotCov	TVarCov	NTotCov	NVarCov	Trna_tot	Trna_ref	Trna_var	Trna_alt1	Trna_alt2
TMEM52	339456	bcgsc.ca	37	1	1849407	1849407	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	208	11	222	1	1	1	0	0	0
PLCH2	9651	ucsc.edu	37	1	2415962	2415962	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	44	5	69	0	0	0	0	0	0
ESPN	83715	ucsc.edu	37	1	6512054	6512054	+	Silent	SNP	C	C	T	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	11	4	19	0	7	4	3	0	0
FBXO6	26270	bcgsc.ca	37	1	11731416	11731416	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	151	9	166	1	7	7	0	0	0
RSC1A1	6248	ucsc.edu	37	1	15987720	15987720	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	38	4	36	0	12	12	0	0	0
SPEN	23013	ucsc.edu	37	1	16261249	16261249	+	Silent	SNP	C	C	A	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	60	6	62	0	27	27	0	0	0
UBR4	23352	ucsc.edu	37	1	19467301	19467301	+	Silent	SNP	G	G	T	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	34	4	47	0	20	20	0	0	0
SH2D5	400745	ucsc.edu	37	1	21050182	21050182	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	37	4	50	0	7	7	0	0	0
C1orf213	148898	ucsc.edu	37	1	23697671	23697671	+	RNA	SNP	C	C	A	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	33	5	33	0	3	3	0	0	0
ASAP3	55616	ucsc.edu	37	1	23761046	23761046	+	Silent	SNP	C	C	A	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	50	5	75	0	21	21	0	0	0
ZSCAN20	7579	ucsc.edu	37	1	33954769	33954769	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	38	4	24	0	0	0	0	0	0
AGO1	26523	bcgsc.ca	37	1	36367670	36367670	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	94	7	112	0	0	0	0	0	0
FOXD2	2306	bcgsc.ca	37	1	47904375	47904375	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	212	10	263	1	1	1	0	0	0
TMEM59	9528	ucsc.edu	37	1	54502289	54502289	+	Silent	SNP	G	G	T	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	28	4	13	0	0	0	0	0	0
FGGY	55277	ucsc.edu	37	1	60107019	60107019	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	55	6	57	0	0	0	0	0	0
SGIP1	84251	bcgsc.ca	37	1	67155934	67155934	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	250	11	283	1	1	1	0	0	0
GTF2B	2959	bcgsc.ca	37	1	89325644	89325644	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	173	10	170	0	5	5	0	0	0
GBP5	115362	bcgsc.ca	37	1	89729515	89729515	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	202	11	205	0	3	3	0	0	0
DPYD	1806	ucsc.edu	37	1	97700432	97700432	+	Silent	SNP	G	G	T	rs144271454	alternate_allele	TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	32	4	31	0	6	6	0	0	0
AGL	178	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	100346675	100346675	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	96	44	104	0	18	14	4	0	0
AGL	178	bcgsc.ca	37	1	100366281	100366281	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	267	11	253	4	27	27	0	0	0
FNDC7	163479	bcgsc.ca	37	1	109270512	109270512	+	Silent	SNP	C	C	A	rs200963426	alternate_allele	TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	97	7	151	2	0	0	0	0	0
RBM15	64783	bcgsc.ca	37	1	110882977	110882977	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	124	8	125	0	7	7	0	0	0
SLC16A4	9122	ucsc.edu	37	1	110924396	110924396	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	33	4	52	0	119	119	0	0	0
OLFML3	56944	ucsc.edu	37	1	114522155	114522155	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	75	8	72	0	1	1	0	0	0
NUDT17	200035	ucsc.edu;bcgsc.ca	37	1	145587793	145587793	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	30	6	31	0	5	5	0	0	0
SEMA6C	10500	bcgsc.ca	37	1	151115003	151115003	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	110	8	124	0	15	15	0	0	0
DCST2	127579	bcgsc.ca	37	1	155004157	155004157	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	103	7	135	0	1	1	0	0	0
TMEM79	84283	broad.mit.edu	37	1	156256105	156256105	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	106	3	143	0	3	3	0	0	0
HDGF	3068	bcgsc.ca	37	1	156714096	156714096	+	Silent	SNP	G	G	T	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	526	17	598	1	224	224	0	0	0
IGSF9	57549	ucsc.edu	37	1	159898260	159898260	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	29	4	16	0	4	4	0	0	0
PRRC2C	23215	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	171535917	171535917	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	37	11	49	0	42	18	24	0	0
TNR	7143	ucsc.edu	37	1	175306793	175306793	+	Silent	SNP	G	G	T	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	53	5	54	0	0	0	0	0	0
ASTN1	460	ucsc.edu	37	1	176992680	176992680	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	41	4	32	0	0	0	0	0	0
GLUL	2752	bcgsc.ca	37	1	182357740	182357740	+	Silent	SNP	G	G	T	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	147	7	164	0	241	241	0	0	0
GPR25	2848	bcgsc.ca	37	1	200843099	200843099	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	65	6	73	0	0	0	0	0	0
PIK3C2B	5287	ucsc.edu	37	1	204419029	204419029	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	50	5	56	0	4	4	0	0	0
MDM4	4194	ucsc.edu	37	1	204495530	204495530	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	37	4	57	0	2	2	0	0	0
NFASC	23114	bcgsc.ca	37	1	204921195	204921195	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	68	6	58	0	0	0	0	0	0
CNTN2	6900	ucsc.edu	37	1	205030420	205030420	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	44	4	46	0	0	0	0	0	0
TMCC2	9911	ucsc.edu;bcgsc.ca	37	1	205210855	205210855	+	Silent	SNP	C	C	A	rs200429926		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	37	5	44	0	0	0	0	0	0
PPP2R5A	5525	ucsc.edu	37	1	212522557	212522557	+	Silent	SNP	G	G	T	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	49	5	58	0	32	32	0	0	0
AGT	183	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	230841797	230841797	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	126	57	146	0	51	21	30	0	0
SIPA1L2	57568	bcgsc.ca	37	1	232579396	232579396	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	160	9	149	0	7	7	0	0	0
LYST	1130	bcgsc.ca	37	1	235840464	235840464	+	Silent	SNP	C	C	A	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	129	7	141	0	9	9	0	0	0
RYR2	6262	ucsc.edu	37	1	237794782	237794782	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	41	5	42	0	0	0	0	0	0
RYR2	6262	ucsc.edu	37	1	237872252	237872252	+	Silent	SNP	G	G	T	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	36	5	30	0	0	0	0	0	0
DIP2C	22982	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	375449	375449	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	54	24	32	0	27	16	11	0	0
WDR37	22884	ucsc.edu	37	10	1151130	1151130	+	Silent	SNP	C	C	A	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	42	4	45	0	13	13	0	0	0
PFKP	5214	ucsc.edu;bcgsc.ca	37	10	3179752	3179752	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	23	5	25	0	0	0	0	0	0
ZEB1	6935	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	31812949	31812949	+	Missense_Mutation	SNP	G	G	T	rs35653460	alternate_allele	TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	147	59	140	0	13	7	6	0	0
PARD3	56288	ucsc.edu	37	10	34558800	34558800	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	32	4	34	0	90	90	0	0	0
GJD4	219770	bcgsc.ca	37	10	35896618	35896618	+	Silent	SNP	G	G	T	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	164	10	204	0	0	0	0	0	0
ZNF33B	7582	bcgsc.ca	37	10	43089479	43089479	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	134	8	127	0	29	29	0	0	0
TMEM72	643236	ucsc.edu	37	10	45427454	45427454	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	39	4	26	0	0	0	0	0	0
OGDHL	55753	ucsc.edu	37	10	50944219	50944219	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	32	4	34	0	0	0	0	0	0
JMJD1C	221037	bcgsc.ca	37	10	64966715	64966715	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	102	8	86	0	24	24	0	0	0
TACR2	6865	ucsc.edu	37	10	71175705	71175705	+	Silent	SNP	G	G	T	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	40	4	56	0	0	0	0	0	0
RPS24	6229	ucsc.edu;bcgsc.ca	37	10	79795290	79795290	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	53	6	73	0	1896	1896	0	0	0
WAPAL	23063	bcgsc.ca	37	10	88233663	88233663	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	140	8	133	0	20	20	0	0	0
OPN4	94233	bcgsc.ca	37	10	88414583	88414583	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	117	8	119	0	0	0	0	0	0
ATAD1	84896	ucsc.edu	37	10	89530786	89530786	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	54	6	58	0	0	0	0	0	0
OPALIN	93377	bcgsc.ca	37	10	98113208	98113208	+	Missense_Mutation	SNP	C	C	A	rs201943231	alternate_allele	TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	211	11	171	1	0	0	0	0	0
DNMBP	23268	ucsc.edu	37	10	101716916	101716916	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	42	4	22	0	6	6	0	0	0
CPN1	1369	ucsc.edu	37	10	101825111	101825111	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	39	4	47	0	0	0	0	0	0
SLK	9748	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	105763115	105763115	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	68	31	76	1	35	18	17	0	0
COL17A1	1308	ucsc.edu	37	10	105794458	105794458	+	Silent	SNP	C	C	A	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	41	4	32	0	0	0	0	0	0
SEC23IP	11196	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	121692658	121692658	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	152	68	128	0	25	13	12	0	0
ADAM12	8038	broad.mit.edu;ucsc.edu	37	10	127789653	127789653	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	62	6	71	0	0	0	0	0	0
DOCK1	1793	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	128788791	128788791	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	29	12	48	0	17	8	9	0	0
MTG1	92170	bcgsc.ca	37	10	135213060	135213060	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	112	8	149	0	45	45	0	0	0
IRF7	3665	ucsc.edu	37	11	614354	614354	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	21	4	21	0	6	6	0	0	0
OR56A1	120796	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	6048449	6048449	+	Silent	SNP	A	A	G	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	125	56	148	0	0	0	0	0	0
SMPD1	6609	ucsc.edu	37	11	6412712	6412712	+	Silent	SNP	C	C	A	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	33	4	43	0	78	78	0	0	0
SBF2-AS1	283104	bcgsc.ca	37	11	9806631	9806631	+	RNA	SNP	G	G	T	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	41	6	49	0	1	1	0	0	0
SERGEF	26297	ucsc.edu	37	11	18022066	18022066	+	Silent	SNP	C	C	A	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	58	6	56	0	12	12	0	0	0
MPPED2	744	ucsc.edu	37	11	30516853	30516853	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	43	5	58	0	0	0	0	0	0
EXT2	2132	ucsc.edu	37	11	44151604	44151604	+	Silent	SNP	G	G	T	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	41	4	58	0	0	0	0	0	0
ALX4	60529	ucsc.edu	37	11	44286631	44286631	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	40	4	55	1	0	0	0	0	0
OR7E5P	219445	ucsc.edu	37	11	55746668	55746668	+	RNA	SNP	C	C	A	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	18	4	16	0	0	0	0	0	0
LOC283194	0	bcgsc.ca	37	11	58715517	58715517	+	RNA	SNP	T	T	C	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	17	10	26	0	0	0	0	0	0
GLYATL1	92292	ucsc.edu	37	11	58723279	58723279	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	46	5	40	0	35	35	0	0	0
RPLP0P2	113157	ucsc.edu	37	11	61404594	61404594	+	RNA	SNP	C	C	A	rs118164060	byfrequency;alternate_allele	TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	41	4	46	0	0	0	0	0	0
B3GAT3	26229	bcgsc.ca	37	11	62384475	62384475	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	212	9	220	1	52	52	0	0	0
MAP3K11	4296	ucsc.edu	37	11	65381040	65381040	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	39	4	58	0	41	41	0	0	0
EIF1AD	84285	ucsc.edu	37	11	65767117	65767117	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	60	6	78	0	17	17	0	0	0
SPTBN2	6712	bcgsc.ca	37	11	66476483	66476483	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	84	6	128	1	0	0	0	0	0
C11orf80	79703	ucsc.edu	37	11	66595800	66595800	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	37	5	35	0	19	19	0	0	0
XRRA1	143570	ucsc.edu	37	11	74559382	74559382	+	Silent	SNP	G	G	T	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	35	4	43	0	12	12	0	0	0
BIRC3	330	bcgsc.ca	37	11	102195334	102195334	+	Silent	SNP	C	C	A	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	135	10	162	0	15	15	0	0	0
MSANTD4	84437	broad.mit.edu	37	11	105881299	105881299	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	129	3	173	0	24	24	0	0	0
ATM	472	ucsc.edu	37	11	108178688	108178688	+	Silent	SNP	G	G	T	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	31	4	29	0	10	10	0	0	0
FDXACB1	91893	ucsc.edu	37	11	111747553	111747553	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	37	4	29	0	0	0	0	0	0
NCAM1	4684	ucsc.edu	37	11	113103963	113103963	+	Silent	SNP	C	C	A	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	36	5	27	0	1	1	0	0	0
ARHGEF12	23365	ucsc.edu	37	11	120348870	120348870	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	44	5	39	0	0	0	0	0	0
CCDC15	80071	ucsc.edu	37	11	124829043	124829043	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	31	4	21	0	0	0	0	0	0
DCPS	28960	ucsc.edu	37	11	126176624	126176624	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	40	5	71	0	34	34	0	0	0
IGSF9B	22997	ucsc.edu	37	11	133801592	133801592	+	Silent	SNP	C	C	A	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	37	4	40	0	0	0	0	0	0
VWF	7450	ucsc.edu	37	12	6127550	6127550	+	Silent	SNP	G	G	T	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	39	5	18	0	25	25	0	0	0
FAM86FP	653113	broad.mit.edu	37	12	8384397	8384397	+	RNA	SNP	C	C	T	rs202131353		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	115	11	85	1	31	31	0	0	0
DDX12P	440081	ucsc.edu	37	12	9574037	9574037	+	RNA	SNP	C	C	T	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	161	5	107	2	40	11	28	0	1
C2CD5	9847	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	22623804	22623804	+	Silent	SNP	C	C	T	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	93	27	78	0	43	26	17	0	0
PRICKLE1	144165	bcgsc.ca	37	12	42859031	42859031	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	112	7	104	1	57	57	0	0	0
ITGB7	3695	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	53586547	53586547	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	106	65	75	0	37	11	26	0	0
ITGA7	3679	ucsc.edu	37	12	56088250	56088250	+	Silent	SNP	C	C	A	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	42	4	45	0	16	16	0	0	0
ITGA7	3679	ucsc.edu	37	12	56088256	56088256	+	Silent	SNP	C	C	A	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	48	5	46	0	19	18	1	0	0
LRP1	4035	ucsc.edu;bcgsc.ca	37	12	57585136	57585136	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	71	7	51	0	38	38	0	0	0
C12orf61	283416	bcgsc.ca	37	12	62996744	62996744	+	Silent	SNP	C	C	A	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	93	6	60	0	1	1	0	0	0
OTOGL	283310	ucsc.edu	37	12	80762047	80762047	+	Silent	SNP	C	C	A	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	40	4	10	0	0	0	0	0	0
TDG	6996	hgsc.bcm.edu	37	12	104378526	104378526	+	Splice_Site	SNP	G	G	T	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	63	5	49	1	0	0	0	0	0
SSH1	54434	ucsc.edu	37	12	109217069	109217069	+	Missense_Mutation	SNP	C	C	A	rs147144616	byfrequency;alternate_allele	TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	29	4	14	0	10	10	0	0	0
SNRNP35	11066	ucsc.edu	37	12	123950707	123950707	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	63	6	52	0	68	68	0	0	0
FAM101A	144347	bcgsc.ca	37	12	124798896	124798896	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	216	10	175	0	0	0	0	0	0
ZNF605	100289635	bcgsc.ca	37	12	133502270	133502270	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	122	8	66	0	6	6	0	0	0
MTIF3	219402	ucsc.edu	37	13	28014392	28014392	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	139	1	149	0	33	29	4	0	0
CCNA1	8900	ucsc.edu	37	13	37006811	37006811	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	26	4	41	0	0	0	0	0	0
KIAA1704	55425	bcgsc.ca	37	13	45580380	45580380	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	247	11	213	1	16	16	0	0	0
ATP7B	540	ucsc.edu	37	13	52518378	52518378	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	42	4	50	0	10	10	0	0	0
CHD8	57680	ucsc.edu	37	14	21870657	21870657	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	39	5	29	0	0	0	0	0	0
NYNRIN	57523	ucsc.edu	37	14	24885509	24885509	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	36	4	38	0	19	19	0	0	0
SLC25A21	89874	ucsc.edu	37	14	37203759	37203759	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	29	4	27	1	1	1	0	0	0
FSCB	84075	ucsc.edu	37	14	44974806	44974806	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	38	4	40	0	0	0	0	0	0
FSCB	84075	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	44975261	44975261	+	Silent	SNP	C	C	T	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	88	38	88	0	0	0	0	0	0
VRTN	55237	bcgsc.ca	37	14	74824697	74824697	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	111	7	130	0	0	0	0	0	0
TMEM63C	57156	bcgsc.ca	37	14	77708733	77708733	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	265	12	324	0	0	0	0	0	0
TDP1	55775	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	90429932	90429932	+	Silent	SNP	G	G	A	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	125	51	137	0	7	2	5	0	0
NRDE2	55051	ucsc.edu	37	14	90752823	90752823	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	32	4	54	0	13	13	0	0	0
OTUD7A	161725	ucsc.edu;bcgsc.ca	37	15	31851376	31851376	+	Silent	SNP	G	G	T	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	23	5	54	0	1	1	0	0	0
RYR3	6263	ucsc.edu	37	15	34145784	34145784	+	Missense_Mutation	SNP	G	G	T	rs189125234	alternate_allele	TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	41	4	60	0	0	0	0	0	0
GPR176	11245	ucsc.edu	37	15	40093899	40093899	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	35	4	70	0	2	2	0	0	0
DISP2	85455	bcgsc.ca	37	15	40656126	40656126	+	Silent	SNP	C	C	A	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	30	5	103	0	0	0	0	0	0
TGM5	9333	ucsc.edu	37	15	43525500	43525500	+	Silent	SNP	C	C	A	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	41	4	77	1	0	0	0	0	0
TP53BP1	7158	ucsc.edu;bcgsc.ca	37	15	43766925	43766925	+	Silent	SNP	G	G	T	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	39	5	86	0	6	6	0	0	0
EID1	23741	ucsc.edu	37	15	49170809	49170809	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	38	5	72	0	159	159	0	0	0
AP4E1	23431	ucsc.edu	37	15	51207744	51207744	+	Nonsense_Mutation	SNP	G	G	T	rs138815652	alternate_allele	TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	37	4	105	0	1	1	0	0	0
DMXL2	23312	ucsc.edu	37	15	51743879	51743879	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	32	4	79	0	4	4	0	0	0
TLN2	83660	ucsc.edu	37	15	63092915	63092915	+	Silent	SNP	C	C	A	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	32	4	40	0	42	42	0	0	0
MEGF11	84465	ucsc.edu	37	15	66250051	66250051	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	53	5	69	0	0	0	0	0	0
LRRC49	54839	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	71341787	71341787	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	121	43	115	1	10	10	0	0	0
LRRC49	54839	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	71341790	71341790	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	125	46	122	1	5	5	0	0	0
EDC3	80153	bcgsc.ca	37	15	74967400	74967400	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	432	16	374	1	11	10	1	0	0
SH2D7	646892	ucsc.edu;bcgsc.ca	37	15	78390846	78390846	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	38	5	69	0	0	0	0	0	0
IREB2	3658	ucsc.edu	37	15	78732189	78732189	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	40	4	38	0	5	5	0	0	0
ADAMTSL3	57188	ucsc.edu	37	15	84582128	84582128	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	39	4	57	0	0	0	0	0	0
RLBP1	6017	ucsc.edu	37	15	89755078	89755078	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	35	4	95	0	0	0	0	0	0
TICRR	90381	ucsc.edu	37	15	90169181	90169181	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	43	4	78	0	1	1	0	0	0
IGF1R	3480	ucsc.edu;bcgsc.ca	37	15	99442747	99442747	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	64	6	118	1	7	7	0	0	0
LRRK1	79705	ucsc.edu	37	15	101597250	101597250	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	41	4	78	0	0	0	0	0	0
CLCN7	1186	ucsc.edu	37	16	1509140	1509140	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	63	6	48	0	112	110	2	0	0
C16orf59	80178	ucsc.edu	37	16	2511113	2511113	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	48	5	46	1	9	9	0	0	0
PRSS27	83886	ucsc.edu	37	16	2762760	2762760	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	18	4	12	0	4	4	0	0	0
SRRM2	23524	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	2814253	2814253	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	303	72	221	0	84	60	24	0	0
C16orf90	646174	ucsc.edu	37	16	3543906	3543906	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	33	4	22	0	0	0	0	0	0
ANKS3	124401	bcgsc.ca	37	16	4780063	4780063	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	143	8	112	1	34	34	0	0	0
C16orf89	146556	bcgsc.ca	37	16	5110306	5110306	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	88	7	92	0	4	4	0	0	0
SRCAP	10847	broad.mit.edu	37	16	30735227	30735227	+	Silent	SNP	A	A	C	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	153	7	125	0	86	85	1	0	0
CES1	1066	bcgsc.ca	37	16	55855304	55855304	+	Silent	SNP	C	C	A	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	147	8	110	0	0	0	0	0	0
C16orf86	388284	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	67702137	67702137	+	Nonsense_Mutation	SNP	C	C	G	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	32	18	25	0	17	9	8	0	0
JPH3	57338	ucsc.edu	37	16	87723285	87723285	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	34	4	29	0	0	0	0	0	0
CDH15	1013	ucsc.edu	37	16	89253866	89253866	+	Missense_Mutation	SNP	G	G	T	rs146051428	alternate_allele	TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	50	5	43	0	0	0	0	0	0
CPNE7	27132	broad.mit.edu	37	16	89662976	89662976	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	92	8	71	0	4	4	0	0	0
VPS9D1	9605	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	16	89775318	89775318	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	29	12	27	0	0	0	0	0	0
LOC100128881	0	bcgsc.ca	37	16	89778838	89778838	+	RNA	SNP	G	G	T	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	45	5	45	0	1	1	0	0	0
SCARF1	8578	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	1538231	1538231	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	87	51	75	0	11	7	3	1	0
RPA1	6117	bcgsc.ca	37	17	1746132	1746132	+	Silent	SNP	C	C	A	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	122	9	71	0	46	46	0	0	0
ITGAE	3682	ucsc.edu	37	17	3665246	3665246	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	56	6	49	0	1	1	0	0	0
CAMKK1	84254	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	3788622	3788622	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	46	14	39	0	0	0	0	0	0
CHRNE	1145	ucsc.edu	37	17	4802318	4802318	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	41	5	39	0	2	2	0	0	0
ZNF232	7775	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	5009512	5009512	+	Silent	SNP	A	A	G	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	188	47	136	0	5	2	3	0	0
KCTD11	147040	hgsc.bcm.edu	37	17	7256581	7256581	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	102	6	117	1	27	27	0	0	0
SENP3	26168	ucsc.edu	37	17	7466479	7466479	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	35	4	20	0	25	25	0	0	0
SENP3	26168	hgsc.bcm.edu;bcgsc.ca	37	17	7468055	7468055	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	129	7	92	0	51	51	0	0	0
FXR2	9513	ucsc.edu	37	17	7509007	7509007	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	31	4	26	0	28	28	0	0	0
KDM6B	23135	bcgsc.ca	37	17	7750678	7750678	+	Silent	SNP	C	C	A	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	248	10	221	3	35	35	0	0	0
CTC1	80169	bcgsc.ca	37	17	8133882	8133882	+	Silent	SNP	C	C	A	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	145	8	95	0	0	0	0	0	0
ALDH3A2	224	bcgsc.ca	37	17	19575176	19575176	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	311	14	233	0	167	165	0	0	2
ULK2	9706	bcgsc.ca	37	17	19685379	19685379	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	68	6	46	0	0	0	0	0	0
TBC1D3P5	440419	bcgsc.ca	37	17	25751581	25751581	+	RNA	SNP	G	G	T	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	151	9	123	1	0	0	0	0	0
SLC13A2	9058	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	26818545	26818545	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	150	46	131	0	1	1	0	0	0
SPAG5	10615	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	26919846	26919846	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	253	145	185	0	5	5	0	0	0
CWC25	54883	bcgsc.ca	37	17	36977196	36977196	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	266	10	262	0	31	31	0	0	0
BRCA1	672	bcgsc.ca	37	17	41256154	41256154	+	Silent	SNP	G	G	T	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	341	12	227	1	6	6	0	0	0
SKAP1	8631	bcgsc.ca	37	17	46265269	46265269	+	Silent	SNP	C	C	A	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	62	6	45	0	18	18	0	0	0
SLC35B1	10237	bcgsc.ca	37	17	47781468	47781468	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	170	9	129	0	0	0	0	0	0
ITGA3	3675	bcgsc.ca	37	17	48149437	48149437	+	Silent	SNP	G	G	T	rs201297040	alternate_allele	TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	145	7	123	0	516	515	1	0	0
METTL2A	339175	bcgsc.ca	37	17	60522244	60522244	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	154	8	103	0	43	43	0	0	0
PLEKHM1P	440456	ucsc.edu	37	17	62796841	62796841	+	RNA	SNP	C	C	A	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	47	5	35	0	3	3	0	0	0
FAM20A	54757	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	66538845	66538846	+	Frame_Shift_Del	DEL	AA	AA	-	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	AA	AA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	131	30	102	0	0	0	0	0	0
SDK2	54549	ucsc.edu;bcgsc.ca	37	17	71429940	71429940	+	Missense_Mutation	SNP	C	C	A	rs187100590	alternate_allele	TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	25	7	35	0	0	0	0	0	0
UNC13D	201294	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	73831766	73831766	+	Silent	SNP	G	G	T	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	70	23	62	1	1	1	0	0	0
EVPL	2125	bcgsc.ca	37	17	74006395	74006395	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	86	7	84	0	34	34	0	0	0
PRCD	768206	ucsc.edu	37	17	74536235	74536235	+	Silent	SNP	C	C	A	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	51	5	22	0	0	0	0	0	0
SGSH	6448	ucsc.edu	37	17	78190905	78190905	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	39	5	23	0	30	30	0	0	0
MYOM1	8736	bcgsc.ca	37	18	3187546	3187546	+	Silent	SNP	C	C	A	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	105	7	107	0	0	0	0	0	0
SOGA2	23255	ucsc.edu	37	18	8825995	8825995	+	Missense_Mutation	SNP	C	C	A	rs148212855	alternate_allele	TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	38	4	39	0	8	8	0	0	0
CTAGE1	64693	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	19997258	19997258	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	169	71	253	0	0	0	0	0	0
KATNAL2	83473	ucsc.edu	37	18	44601678	44601678	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	37	4	25	0	2	2	0	0	0
ZNF236	7776	bcgsc.ca	37	18	74607095	74607095	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	121	7	135	0	5	5	0	0	0
DOT1L	84444	ucsc.edu	37	19	2222027	2222027	+	Silent	SNP	G	G	T	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	32	4	26	0	6	6	0	0	0
ZNF556	80032	bcgsc.ca	37	19	2878181	2878181	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	139	8	139	0	0	0	0	0	0
RAX2	84839	ucsc.edu	37	19	3771650	3771650	+	Missense_Mutation	SNP	G	G	T	rs200153795	alternate_allele	TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	36	4	37	0	0	0	0	0	0
PRR22	163154	ucsc.edu	37	19	5783416	5783416	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	41	4	57	0	3	3	0	0	0
CRB3	92359	ucsc.edu	37	19	6466630	6466630	+	Missense_Mutation	SNP	C	C	A	rs137863575	byfrequency;alternate_allele	TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	38	4	59	0	70	70	0	0	0
CAMSAP3	57662	ucsc.edu	37	19	7672748	7672748	+	Silent	SNP	C	C	A	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	27	4	43	0	0	0	0	0	0
LRRC8E	80131	ucsc.edu	37	19	7965002	7965002	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	38	4	36	0	2	2	0	0	0
HNRNPM	4670	ucsc.edu	37	19	8527467	8527467	+	Splice_Site	SNP	T	T	G	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	151	2	127	0	0	0	0	0	0
MUC16	94025	bcgsc.ca	37	19	9010994	9010994	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	213	9	176	2	0	0	0	0	0
ZNF20	7568	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	12246707	12246707	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	87	36	128	1	0	0	0	0	0
SYDE1	85360	ucsc.edu	37	19	15223298	15223298	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	30	4	20	0	16	16	0	0	0
HAUS8	93323	ucsc.edu	37	19	17169669	17169669	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	44	5	33	0	6	6	0	0	0
ABHD8	79575	ucsc.edu	37	19	17405534	17405534	+	Silent	SNP	G	G	T	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	52	5	66	1	47	47	0	0	0
UNC13A	23025	ucsc.edu	37	19	17756526	17756526	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	50	5	53	1	0	0	0	0	0
JAK3	3718	bcgsc.ca	37	19	17942203	17942203	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	114	8	128	1	0	0	0	0	0
CILP2	148113	ucsc.edu	37	19	19656304	19656304	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	30	4	28	0	0	0	0	0	0
GMIP	51291	ucsc.edu	37	19	19752638	19752638	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	35	4	43	0	4	4	0	0	0
ZNF792	126375	ucsc.edu	37	19	35449057	35449057	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	33	4	32	1	2	2	0	0	0
LGI4	163175	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	35617247	35617247	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	36	17	30	0	0	0	0	0	0
ATP4A	495	ucsc.edu	37	19	36046408	36046408	+	Silent	SNP	G	G	T	rs200522604	alternate_allele	TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	40	4	53	0	0	0	0	0	0
ZNF546	339327	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	40520846	40520846	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	84	45	74	0	4	2	0	2	0
EGLN2	112398	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	41306603	41306603	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	52	15	56	0	26	16	10	0	0
TRPM4	54795	bcgsc.ca	37	19	49705258	49705258	+	Silent	SNP	C	C	A	rs149337483	alternate_allele	TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	198	9	234	0	31	31	0	0	0
IZUMO2	126123	ucsc.edu;bcgsc.ca	37	19	50666348	50666348	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	16	4	26	0	0	0	0	0	0
CNOT3	4849	ucsc.edu	37	19	54653322	54653322	+	Silent	SNP	G	G	T	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	42	5	51	0	47	47	0	0	0
ZNF552	79818	ucsc.edu	37	19	58319788	58319788	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	42	4	57	0	4	4	0	0	0
COLEC11	78989	ucsc.edu	37	2	3687899	3687899	+	Silent	SNP	C	C	A	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	40	6	49	0	2	2	0	0	0
ALLC	55821	bcgsc.ca	37	2	3744967	3744967	+	Silent	SNP	G	G	T	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	193	10	162	1	0	0	0	0	0
PUM2	23369	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	20518349	20518349	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	91	35	108	0	25	14	11	0	0
ITSN2	50618	bcgsc.ca	37	2	24440839	24440839	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	129	8	145	2	13	13	0	0	0
OTOF	9381	ucsc.edu	37	2	26698848	26698848	+	Silent	SNP	G	G	T	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	40	4	36	0	0	0	0	0	0
OTOF	9381	ucsc.edu	37	2	26703836	26703836	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	42	4	53	0	0	0	0	0	0
PLB1	151056	ucsc.edu;bcgsc.ca	37	2	28805279	28805279	+	Missense_Mutation	SNP	G	G	T	rs148210058	byfrequency;alternate_allele	TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	23	5	18	0	0	0	0	0	0
NDUFAF7	55471	ucsc.edu	37	2	37468836	37468836	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	42	4	60	0	8	8	0	0	0
THADA	63892	ucsc.edu	37	2	43571344	43571344	+	Silent	SNP	G	G	T	rs182156451	alternate_allele	TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	35	4	30	0	22	22	0	0	0
PNPT1	87178	ucsc.edu	37	2	55894199	55894199	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	41	4	60	0	20	20	0	0	0
AFTPH	54812	bcgsc.ca	37	2	64796765	64796765	+	Silent	SNP	G	G	T	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	146	8	130	0	1	1	0	0	0
CEP68	23177	ucsc.edu;bcgsc.ca	37	2	65298714	65298714	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	89	9	91	0	11	11	0	0	0
TLX2	3196	bcgsc.ca	37	2	74742769	74742769	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	146	8	203	3	0	0	0	0	0
UNC50	25972	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	99232895	99232895	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	106	45	140	1	3	1	2	0	0
IL1B	3553	bcgsc.ca	37	2	113590325	113590325	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	186	8	164	1	3	3	0	0	0
IMP4	92856	ucsc.edu	37	2	131102987	131102987	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	18	4	36	0	50	50	0	0	0
AMER3	205147	bcgsc.ca	37	2	131520588	131520588	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	81	7	81	0	0	0	0	0	0
ARHGEF4	50649	ucsc.edu	37	2	131785635	131785635	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	29	4	40	0	0	0	0	0	0
KCNH7	90134	bcgsc.ca	37	2	163279846	163279846	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	191	10	186	2	0	0	0	0	0
ABCB11	8647	ucsc.edu	37	2	169814507	169814507	+	Silent	SNP	G	G	T	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	39	4	45	0	0	0	0	0	0
TTN	7273	ucsc.edu	37	2	179460399	179460399	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	34	4	25	0	0	0	0	0	0
TTN	7273	ucsc.edu;bcgsc.ca	37	2	179611166	179611166	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	36	10	67	0	0	0	0	0	0
COL3A1	1281	bcgsc.ca	37	2	189858773	189858773	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	77	7	61	0	0	0	0	0	0
ANKRD44	91526	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	197986231	197986231	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	50	18	54	0	0	0	0	0	0
CFLAR	8837	bcgsc.ca	37	2	202000722	202000722	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	122	8	117	0	30	30	0	0	0
CASP10	843	bcgsc.ca	37	2	202093741	202093741	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	141	9	182	0	0	0	0	0	0
FZD5	7855	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	208632800	208632800	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	24	11	25	0	37	19	18	0	0
SPAG16	79582	ucsc.edu	37	2	214149330	214149330	+	Silent	SNP	C	C	A	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	33	4	19	0	0	0	0	0	0
FN1	2335	bcgsc.ca	37	2	216235046	216235046	+	Missense_Mutation	SNP	C	C	A	rs6728999	byfrequency;alternate_allele	TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	90	7	85	1	155	154	1	0	0
ZNF142	7701	ucsc.edu;bcgsc.ca	37	2	219503380	219503380	+	Silent	SNP	G	G	T	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	49	10	66	2	31	19	12	0	0
COL4A4	1286	ucsc.edu	37	2	227895290	227895290	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	52	5	74	0	15	15	0	0	0
NEU2	4759	ucsc.edu	37	2	233899111	233899111	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	39	4	50	0	0	0	0	0	0
ASB18	401036	ucsc.edu	37	2	237172800	237172800	+	Silent	SNP	G	G	T	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	42	4	36	0	0	0	0	0	0
COL6A3	1293	ucsc.edu	37	2	238277576	238277576	+	Silent	SNP	C	C	A	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	47	4	67	0	0	0	0	0	0
TRIB3	57761	ucsc.edu	37	20	372129	372129	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	42	4	31	0	3	3	0	0	0
SIRPB1	10326	ucsc.edu	37	20	1546889	1546889	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	39	4	41	0	7	7	0	0	0
ESF1	51575	ucsc.edu	37	20	13740358	13740358	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	39	4	53	0	10	10	0	0	0
SLC24A3	57419	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	20	19665982	19665982	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	106	41	102	0	1	0	1	0	0
XRN2	22803	ucsc.edu	37	20	21337238	21337238	+	Silent	SNP	C	C	A	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	61	6	46	0	78	78	0	0	0
NFS1	9054	ucsc.edu	37	20	34268727	34268727	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	43	4	50	0	28	28	0	0	0
RPN2	6185	ucsc.edu	37	20	35832361	35832361	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	36	4	48	0	0	0	0	0	0
ACTR5	79913	bcgsc.ca	37	20	37378746	37378746	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	112	7	112	0	8	8	0	0	0
PLCG1	5335	ucsc.edu	37	20	39803146	39803146	+	Silent	SNP	C	C	A	rs200738304	alternate_allele	TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	19	4	14	0	53	52	0	0	1
PCIF1	63935	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	44574469	44574469	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	147	51	141	1	61	25	36	0	0
PREX1	57580	ucsc.edu	37	20	47244406	47244406	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	36	4	40	0	0	0	0	0	0
PREX1	57580	ucsc.edu	37	20	47273639	47273639	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	23	4	26	0	8	8	0	0	0
ARFGEF2	10564	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	47641990	47641990	+	Silent	SNP	C	C	T	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	66	27	90	0	30	10	20	0	0
SNAI1	6615	ucsc.edu	37	20	48600833	48600833	+	Silent	SNP	C	C	T	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	25	4	27	0	1	1	0	0	0
CDH4	1002	ucsc.edu	37	20	60485630	60485630	+	Silent	SNP	C	C	A	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	47	4	53	0	0	0	0	0	0
LAMA5	3911	ucsc.edu	37	20	60891785	60891785	+	Silent	SNP	C	C	T	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	31	5	24	0	73	73	0	0	0
LAMA5	3911	ucsc.edu	37	20	60907741	60907741	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	32	4	35	0	45	45	0	0	0
RTEL1	51750	ucsc.edu	37	20	62317183	62317183	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	32	4	46	0	1	1	0	0	0
DSCAM	1826	ucsc.edu	37	21	41505892	41505892	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	63	6	88	0	0	0	0	0	0
DSCAM	1826	ucsc.edu	37	21	41559170	41559170	+	Silent	SNP	G	G	T	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	37	4	38	0	0	0	0	0	0
TFF2	7032	ucsc.edu	37	21	43767690	43767690	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	50	5	65	0	0	0	0	0	0
KRTAP10-3	386682	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	21	45978008	45978008	+	Silent	SNP	G	G	A	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	33	16	68	0	0	0	0	0	0
GSTT1	2952	broad.mit.edu;bcgsc.ca	37	22	24376512	24376512	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	80	7	49	0	233	227	6	0	0
PATZ1	23598	bcgsc.ca	37	22	31741216	31741216	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	113	8	191	0	42	42	0	0	0
DEPDC5	9681	bcgsc.ca	37	22	32215150	32215150	+	Silent	SNP	C	C	A	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	99	8	146	0	3	3	0	0	0
C22orf28	51493	bcgsc.ca	37	22	32792066	32792066	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	357	12	397	2	0	0	0	0	0
SH3BP1	23616	ucsc.edu	37	22	38043467	38043467	+	Silent	SNP	C	C	A	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	38	5	64	1	5	5	0	0	0
SUN2	25777	ucsc.edu	37	22	39136416	39136416	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	17	4	15	0	101	101	0	0	0
ENTHD1	150350	ucsc.edu	37	22	40140200	40140200	+	Silent	SNP	G	G	T	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	41	4	67	0	0	0	0	0	0
MKL1	57591	ucsc.edu	37	22	40807463	40807463	+	Silent	SNP	G	G	T	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	33	4	68	0	33	33	0	0	0
SEPT3	55964	hgsc.bcm.edu	37	22	42373072	42373072	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	38	3	32	0	0	0	0	0	0
SYN2	6854	broad.mit.edu	37	3	12046124	12046126	+	In_Frame_Del	DEL	AGC	AGC	-	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	AGC	AGC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	9	3	13	0	0	0	0	0	0
ZNF620	253639	bcgsc.ca	37	3	40553892	40553892	+	Splice_Site	SNP	G	G	C	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	57	4	36	0	0	0	0	0	0
CCDC13	152206	hgsc.bcm.edu;bcgsc.ca	37	3	42777251	42777251	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	207	11	154	0	0	0	0	0	0
ALS2CL	259173	hgsc.bcm.edu;bcgsc.ca	37	3	46713506	46713506	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	185	10	160	0	8	8	0	0	0
FBXW12	285231	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	48436087	48436087	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	197	65	121	1	0	0	0	0	0
USP19	10869	ucsc.edu	37	3	49146417	49146417	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	43	4	26	0	15	15	0	0	0
LAMB2	3913	bcgsc.ca	37	3	49158922	49158922	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	223	9	194	0	216	216	0	0	0
MST1	4485	ucsc.edu	37	3	49725331	49725331	+	Splice_Site	SNP	C	C	A	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	40	5	42	0	0	0	0	0	0
CACNA1D	776	bcgsc.ca	37	3	53810682	53810682	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	169	8	124	0	30	30	0	0	0
THOC7	80145	bcgsc.ca	37	3	63819818	63819818	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	131	8	87	0	182	182	0	0	0
BBX	56987	ucsc.edu	37	3	107451868	107451868	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	33	4	29	0	0	0	0	0	0
C3orf52	79669	ucsc.edu	37	3	111831980	111831980	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	33	4	20	0	0	0	0	0	0
KIAA1407	57577	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	113721375	113721375	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	108	34	51	0	4	2	2	0	0
POLQ	10721	bcgsc.ca	37	3	121208536	121208536	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	184	8	123	0	0	0	0	0	0
POLQ	10721	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	121217327	121217327	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	221	118	170	0	0	0	0	0	0
PARP15	165631	bcgsc.ca	37	3	122345837	122345837	+	Silent	SNP	C	C	A	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	107	8	73	0	1	1	0	0	0
ITGB5	3693	bcgsc.ca	37	3	124492669	124492669	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	102	7	112	0	344	344	0	0	0
SEC62	7095	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	169706125	169706125	+	Silent	SNP	C	C	T	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	180	49	150	0	89	59	30	0	0
KLHL6	89857	bcgsc.ca	37	3	183209884	183209884	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	200	11	140	0	1	1	0	0	0
CLDN1	9076	bcgsc.ca	37	3	190039984	190039984	+	Silent	SNP	C	C	A	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	90	7	49	0	204	204	0	0	0
ATP13A3	79572	bcgsc.ca	37	3	194181451	194181451	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	260	10	179	1	28	28	0	0	0
ACAP2	23527	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	195006526	195006526	+	Silent	SNP	T	T	C	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	81	15	63	0	1	0	1	0	0
UBXN7	26043	bcgsc.ca	37	3	196094968	196094968	+	Silent	SNP	C	C	A	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	119	7	98	0	16	15	0	0	1
LMLN	89782	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	197687145	197687145	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	61	13	47	0	9	9	0	0	0
CCKAR	886	ucsc.edu	37	4	26487464	26487464	+	Missense_Mutation	SNP	C	C	A	rs201739265	alternate_allele	TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	36	4	39	0	0	0	0	0	0
ARAP2	116984	ucsc.edu	37	4	36230647	36230647	+	Silent	SNP	G	G	T	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	60	6	67	0	7	7	0	0	0
BEND4	389206	ucsc.edu	37	4	42119591	42119591	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	39	4	35	0	0	0	0	0	0
FRYL	285527	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	48598002	48598003	+	Frame_Shift_Del	DEL	TT	TT	-	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	TT	TT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	64	18	54	0	0	0	0	0	0
CWH43	80157	broad.mit.edu	37	4	49040168	49040168	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	284	5	290	0	0	0	0	0	0
USO1	8615	ucsc.edu	37	4	76731615	76731615	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	33	4	37	0	46	46	0	0	0
NAA11	84779	ucsc.edu	37	4	80246378	80246378	+	Silent	SNP	G	G	T	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	23	4	29	0	0	0	0	0	0
PTPN13	5783	ucsc.edu	37	4	87686607	87686607	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	18	10	14	0	4	3	1	0	0
PTPN13	5783	ucsc.edu	37	4	87705683	87705683	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	40	4	45	0	23	23	0	0	0
TET2	54790	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	106157461	106157461	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	49	24	43	0	6	3	3	0	0
ANK2	287	ucsc.edu	37	4	114279223	114279223	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	41	4	55	1	3	3	0	0	0
TRPC3	7222	broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	122853525	122853525	+	Silent	SNP	G	G	A	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	29	10	46	0	0	0	0	0	0
FAT4	79633	bcgsc.ca	37	4	126329627	126329627	+	Silent	SNP	G	G	T	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	133	7	103	0	2	2	0	0	0
RAB33B	83452	bcgsc.ca	37	4	140394018	140394018	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	118	8	114	0	12	12	0	0	0
CPE	1363	bcgsc.ca	37	4	166385584	166385584	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	59	4	67	0	40	40	0	0	0
GLRA3	8001	ucsc.edu	37	4	175577920	175577920	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	44	4	36	0	0	0	0	0	0
FAT1	2195	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	187530418	187530418	+	Silent	SNP	T	T	A	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	82	32	73	0	236	114	122	0	0
C5orf42	65250	bcgsc.ca	37	5	37120329	37120329	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	101	8	63	0	0	0	0	0	0
BTF3	689	ucsc.edu	37	5	72800201	72800201	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	32	4	52	1	832	830	1	0	1
AGGF1	55109	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	76344781	76344781	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	179	82	150	0	33	15	18	0	0
ARSB	411	bcgsc.ca	37	5	78076386	78076386	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	71	6	83	1	86	84	2	0	0
THBS4	7060	bcgsc.ca	37	5	79375049	79375049	+	Silent	SNP	C	C	A	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	59	6	64	0	21	21	0	0	0
RGMB	285704	ucsc.edu	37	5	98115533	98115533	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	53	6	55	0	8	8	0	0	0
PAM	5066	bcgsc.ca	37	5	102260741	102260741	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	127	9	113	1	0	0	0	0	0
PPIP5K2	23262	bcgsc.ca	37	5	102469239	102469239	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	87	6	87	0	7	7	0	0	0
TRPC7	57113	bcgsc.ca	37	5	135587525	135587525	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	83	6	66	0	0	0	0	0	0
NME5	8382	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	137474383	137474383	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	63	32	64	0	0	0	0	0	0
NME5	8382	hgsc.bcm.edu	37	5	137474383	137474386	+	Frame_Shift_Del	DEL	CTCC	CTCC	-	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	CTCC	CTCC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	70	25	65	0	0	0	0	0	0
PCDHB16	57717	bcgsc.ca	37	5	140562236	140562236	+	Silent	SNP	C	C	A	rs141220052	byfrequency;alternate_allele	TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	218	9	189	0	2	2	0	0	0
PCDHB14	56122	bcgsc.ca	37	5	140605133	140605133	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	194	10	296	0	9	9	0	0	0
PCDH12	51294	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	141336615	141336615	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	97	37	76	0	5	5	0	0	0
PDE6A	5145	ucsc.edu	37	5	149313531	149313531	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	38	4	36	0	0	0	0	0	0
PDGFRB	5159	hgsc.bcm.edu	37	5	149515197	149515197	+	Silent	SNP	C	C	A	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	119	6	122	1	20	20	0	0	0
ANXA6	309	ucsc.edu	37	5	150512077	150512077	+	Silent	SNP	C	C	A	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	27	4	21	0	58	57	1	0	0
THOC3	84321	ucsc.edu	37	5	175395158	175395158	+	Silent	SNP	G	G	T	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	19	4	32	0	19	19	0	0	0
AGXT2L2	85007	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	177642285	177642285	+	Silent	SNP	C	C	T	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	53	27	62	0	0	0	0	0	0
OR2Y1	134083	broad.mit.edu;bcgsc.ca	37	5	180166694	180166694	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	35	11	49	0	0	0	0	0	0
E2F3	1871	bcgsc.ca	37	6	20490578	20490578	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	104	7	78	0	16	16	0	0	0
MRS2	57380	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	24418322	24418322	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	99	43	74	1	0	0	0	0	0
ZSCAN31	64288	bcgsc.ca	37	6	28294377	28294377	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	161	9	176	0	2	2	0	0	0
LY6G6F	259215	bcgsc.ca	37	6	31678354	31678354	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	153	9	177	0	0	0	0	0	0
SLC44A4	80736	ucsc.edu	37	6	31832624	31832624	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	39	5	58	1	231	229	1	0	1
TULP1	7287	bcgsc.ca	37	6	35473904	35473904	+	Missense_Mutation	SNP	C	C	A	rs140460892	alternate_allele	TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	85	6	91	1	0	0	0	0	0
SLC26A8	116369	bcgsc.ca	37	6	35967812	35967812	+	Silent	SNP	C	C	A	rs148733615	byfrequency;alternate_allele	TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	196	10	175	1	0	0	0	0	0
KCTD20	222658	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	36454734	36454734	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	119	45	182	0	31	17	14	0	0
PTK7	5754	ucsc.edu	37	6	43110027	43110027	+	Silent	SNP	C	C	A	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	43	4	65	0	0	0	0	0	0
GPR115	221393	ucsc.edu	37	6	47678616	47678616	+	Silent	SNP	C	C	A	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	60	6	81	1	0	0	0	0	0
SMPD2	6610	bcgsc.ca	37	6	109764261	109764261	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	76	6	70	0	30	30	0	0	0
KIAA1244	57221	ucsc.edu	37	6	138528206	138528206	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	26	4	29	0	0	0	0	0	0
KIAA1244	57221	ucsc.edu	37	6	138632617	138632617	+	Silent	SNP	G	G	T	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	17	4	19	0	1	1	0	0	0
LATS1	9113	ucsc.edu	37	6	149997821	149997821	+	Silent	SNP	G	G	T	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	35	4	31	0	9	9	0	0	0
ULBP1	80329	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	150289835	150289835	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	192	90	213	0	0	0	0	0	0
RAET1K	646024	ucsc.edu	37	6	150321238	150321238	+	RNA	SNP	G	G	T	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	37	4	46	0	0	0	0	0	0
MLLT4	4301	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	168344092	168344092	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	250	105	233	0	0	0	0	0	0
TNRC18	84629	hgsc.bcm.edu	37	7	5401235	5401235	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	15	13	6	2	0	0	0	0	0
ACTB	60	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	5568236	5568236	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	149	98	152	1	5733	2411	3312	4	6
C7orf26	79034	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	6639834	6639834	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	46	29	48	0	33	15	18	0	0
ABCA13	154664	ucsc.edu	37	7	48320981	48320981	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	38	4	20	0	0	0	0	0	0
GUSB	2990	ucsc.edu	37	7	65445298	65445298	+	Silent	SNP	C	C	A	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	42	4	29	0	98	98	0	0	0
POR	5447	ucsc.edu	37	7	75613087	75613087	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	31	4	28	0	187	186	0	0	1
HEPACAM2	253012	bcgsc.ca	37	7	92825188	92825188	+	Nonsense_Mutation	SNP	C	C	A	rs145244580	byfrequency;alternate_allele	TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	168	8	85	0	0	0	0	0	0
ASB4	51666	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	95125264	95125264	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	112	23	101	0	0	0	0	0	0
GPC2	221914	ucsc.edu	37	7	99767960	99767960	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	37	5	25	0	3	3	0	0	0
NRCAM	4897	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	107808822	107808822	+	Silent	SNP	G	G	A	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	81	27	66	0	0	0	0	0	0
DOCK4	9732	ucsc.edu	37	7	111617282	111617282	+	Silent	SNP	G	G	T	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	35	4	18	0	16	16	0	0	0
MIR182	406958	ucsc.edu	37	7	129410314	129410314	+	RNA	SNP	G	G	T	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	41	4	33	0	0	0	0	0	0
CALD1	800	ucsc.edu	37	7	134576421	134576421	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	31	4	29	0	0	0	0	0	0
ZC3HAV1	56829	ucsc.edu	37	7	138793825	138793825	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	21	4	12	0	13	13	0	0	0
ZNF467	168544	ucsc.edu	37	7	149462843	149462843	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	40	4	37	0	2	2	0	0	0
NOS3	4846	ucsc.edu	37	7	150708053	150708053	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	42	4	22	0	4	4	0	0	0
PAXIP1	22976	ucsc.edu	37	7	154748989	154748989	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	37	4	24	0	18	18	0	0	0
CSMD1	64478	ucsc.edu	37	8	3141757	3141757	+	Silent	SNP	C	C	A	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	25	4	29	0	0	0	0	0	0
XKR5	389610	ucsc.edu	37	8	6679431	6679431	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	23	4	38	0	0	0	0	0	0
PCM1	5108	ucsc.edu	37	8	17851052	17851052	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	24	4	23	0	53	53	0	0	0
BMP1	649	ucsc.edu	37	8	22065020	22065020	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	38	4	47	0	0	0	0	0	0
KCNU1	157855	ucsc.edu	37	8	36644839	36644839	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	31	4	24	0	0	0	0	0	0
HGSNAT	138050	ucsc.edu	37	8	43052136	43052136	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	41	4	49	0	62	62	0	0	0
CHD7	55636	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	61654762	61654762	+	Silent	SNP	T	T	C	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	218	89	258	1	5	3	2	0	0
PREX2	80243	ucsc.edu	37	8	69058587	69058587	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	53	5	82	0	0	0	0	0	0
FABP5	2171	ucsc.edu	37	8	82195601	82195601	+	Missense_Mutation	SNP	G	G	T	rs140689809	alternate_allele	TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	38	4	39	0	0	0	0	0	0
ATAD2	29028	bcgsc.ca	37	8	124360482	124360482	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	48	6	37	0	4	4	0	0	0
FER1L6	654463	bcgsc.ca	37	8	124988294	124988294	+	Silent	SNP	C	C	A	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	170	11	135	0	0	0	0	0	0
TG	7038	bcgsc.ca	37	8	133905983	133905983	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	129	9	145	1	0	0	0	0	0
PTPRD	5789	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	8460558	8460558	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	94	40	85	1	0	0	0	0	0
MPDZ	8777	ucsc.edu	37	9	13136144	13136144	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	47	5	40	0	3	3	0	0	0
PRUNE2	158471	ucsc.edu	37	9	79328527	79328527	+	Silent	SNP	C	C	A	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	12	4	13	0	39	39	0	0	0
COL27A1	85301	ucsc.edu	37	9	117050770	117050770	+	Silent	SNP	C	C	A	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	38	4	40	0	41	41	0	0	0
DFNB31	25861	ucsc.edu	37	9	117240875	117240875	+	Silent	SNP	C	C	A	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	41	4	88	0	5	5	0	0	0
PTRH1	138428	ucsc.edu	37	9	130477837	130477837	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	44	4	47	0	15	15	0	0	0
PPP2R4	5524	ucsc.edu	37	9	131899927	131899927	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	48	5	42	0	56	56	0	0	0
LAMC3	10319	ucsc.edu	37	9	133901683	133901683	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	46	5	43	0	0	0	0	0	0
CEL	1056	broad.mit.edu	37	9	135941956	135941956	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	145	9	174	0	0	0	0	0	0
LCN12	286256	broad.mit.edu	37	9	139846817	139846819	+	In_Frame_Del	DEL	TGC	TGC	-	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	TGC	TGC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	25	7	28	0	0	0	0	0	0
CACNA1B	774	ucsc.edu	37	9	140865867	140865867	+	Missense_Mutation	SNP	G	G	T	rs200273878	alternate_allele	TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	35	4	22	0	0	0	0	0	0
CACNA1B	774	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	140943670	140943670	+	Silent	SNP	T	T	C	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	88	38	89	0	0	0	0	0	0
ARSF	416	ucsc.edu	37	X	2998980	2998980	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	33	4	34	0	0	0	0	0	0
CASK	8573	hgsc.bcm.edu	37	X	41448782	41448782	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	36	2	23	0	25	25	0	0	0
UBA1	7317	ucsc.edu	37	X	47065804	47065804	+	Silent	SNP	C	C	A	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	38	5	53	0	235	235	0	0	0
GATA1	2623	ucsc.edu	37	X	48650506	48650506	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	42	5	36	0	0	0	0	0	0
PIM2	11040	ucsc.edu	37	X	48772476	48772476	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	39	5	32	0	7	6	1	0	0
CACNA1F	778	ucsc.edu	37	X	49088206	49088206	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	29	4	45	0	0	0	0	0	0
KDM5C	8242	ucsc.edu	37	X	53239616	53239616	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	19	4	35	0	38	38	0	0	0
GNL3L	54552	ucsc.edu	37	X	54581030	54581030	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	37	4	47	0	15	15	0	0	0
FLJ44635	0	ucsc.edu	37	X	71379755	71379755	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	36	4	39	0	0	0	0	0	0
ERCC6L	54821	ucsc.edu	37	X	71425050	71425050	+	Silent	SNP	G	G	T	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	33	4	39	0	0	0	0	0	0
MAGT1	84061	ucsc.edu;bcgsc.ca	37	X	77150838	77150838	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	32	5	30	0	34	34	0	0	0
SYTL4	94121	ucsc.edu	37	X	99946148	99946148	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	19	4	21	0	12	12	0	0	0
OCRL	4952	ucsc.edu;bcgsc.ca	37	X	128710358	128710358	+	Silent	SNP	G	G	T	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	36	5	49	0	20	20	0	0	0
FHL1	2273	ucsc.edu	37	X	135291432	135291432	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	37	4	31	0	22	22	0	0	0
ARHGEF6	9459	ucsc.edu	37	X	135757177	135757177	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	42	4	58	0	0	0	0	0	0
ARHGEF6	9459	ucsc.edu	37	X	135772886	135772886	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	40	4	35	0	3	3	0	0	0
SMARCB1	6598	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	22	24175838	24175839	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	111	91	149	0	0	0	0	0	0
BNC2	54796	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	9	16552614	16552615	+	In_Frame_Ins	INS	-	-	GAA	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	77	17	90	0	0	0	0	0	0
NME5	8382	hgsc.bcm.edu	37	5	137474385	137474386	+	Nonsense_Mutation	DNP	CC	CC	AG	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	CC	CC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	66	33	67	0	0	0	0	0	0
GTF3C5	9328	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	135917679	135917680	+	Missense_Mutation	DNP	TT	TT	AA	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	TT	TT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	94	35	119	0	0	0	0	0	0
POLDIP2	26073	broad.mit.edu	37	17	26684350	26684351	+	Missense_Mutation	DNP	GC	GC	AT	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	GC	GC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	31	18	9	0	0	0	0	0	0
