Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	TTotCov	TVarCov	NTotCov	NVarCov	Trna_tot	Trna_ref	Trna_var	Trna_alt1	Trna_alt2
KIF1B	23095	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	10328310	10328310	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	110	26	144	1	0	0	0	0	0
VPS13D	55187	bcgsc.ca	37	1	12378145	12378145	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	30	6	51	0	0	0	0	0	0
HMGCL	3155	hgsc.bcm.edu	37	1	24151846	24151846	+	Silent	SNP	A	A	G	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	87	27	8	0	1	1	0	0	0
SYNC	81493	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	33161106	33161106	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	88	24	131	0	6	5	1	0	0
ZC3H12A	80149	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	37949045	37949045	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	196	53	135	0	19	11	8	0	0
KTI12	112970	hgsc.bcm.edu	37	1	52499078	52499078	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	43	13	1	0	8	2	6	0	0
DHCR24	1718	broad.mit.edu	37	1	55317995	55317995	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	90	4	94	0	178	176	2	0	0
NRAS	4893	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	115256491	115256491	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	74	28	102	0	13	7	6	0	0
GON4L	54856	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	155723012	155723012	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	176	51	182	1	14	10	4	0	0
C1orf61	10485	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	156386616	156386616	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	153	42	172	1	0	0	0	0	0
DDR2	4921	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	162729664	162729664	+	Silent	SNP	G	G	A	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	172	52	198	0	0	0	0	0	0
C1orf114	57821	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	169390718	169390718	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	77	35	73	0	0	0	0	0	0
SFMBT2	57713	hgsc.bcm.edu	37	10	7214001	7214001	+	Silent	SNP	G	G	A	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	8	6	1	0	0	0	0	0	0
PLXDC2	84898	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	20335920	20335920	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	58	5	56	0	22	16	6	0	0
TET1	80312	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	70332130	70332130	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	85	28	93	0	0	0	0	0	0
OIT3	170392	broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	74692266	74692266	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	69	16	58	1	0	0	0	0	0
KCNMA1	3778	broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	78651371	78651371	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	45	14	65	1	1	1	0	0	0
PTEN	5728	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	89717690	89717690	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	171	49	163	0	87	50	36	1	0
WDR96	80217	broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	105928500	105928500	+	Splice_Site	SNP	A	A	T	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	22	4	32	0	0	0	0	0	0
PDZD8	118987	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	119043959	119043959	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	68	23	70	0	21	10	11	0	0
PWWP2B	170394	hgsc.bcm.edu	37	10	134218416	134218416	+	Silent	SNP	C	C	T	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	5	4	0	0	3	3	0	0	0
MUC6	4588	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	1018068	1018068	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	411	70	394	0	0	0	0	0	0
MUC5B	727897	hgsc.bcm.edu	37	11	1253980	1253980	+	Missense_Mutation	SNP	A	A	G	rs202127660		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	89	8	19	0	0	0	0	0	0
MUC5B	727897	bcgsc.ca	37	11	1267042	1267042	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	843	248	589	3	0	0	0	0	0
SBF2-AS1	283104	bcgsc.ca	37	11	9803007	9803007	+	RNA	SNP	A	A	C	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	43	18	40	0	0	0	0	0	0
AHNAK	79026	broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	62297916	62297916	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	185	67	186	1	9	3	6	0	0
EEF1G	1937	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	62334912	62334912	+	Missense_Mutation	SNP	A	A	C	rs11549626		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	99	32	70	0	2605	1505	1100	0	0
DGAT2	84649	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	75509414	75509414	+	Missense_Mutation	SNP	G	G	C	rs145750206	byfrequency;alternate_allele	TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	97	33	77	0	1	1	0	0	0
KLRC3	3823	hgsc.bcm.edu;broad.mit.edu	37	12	10573086	10573086	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	48	13	68	0	0	0	0	0	0
KLRC2	3822	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	10588522	10588522	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	154	34	146	0	0	0	0	0	0
DDX11	1663	ucsc.edu	37	12	31244689	31244689	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	344	30	128	20	7	3	4	0	0
DENND5B	160518	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	31551284	31551284	+	Silent	SNP	C	C	T	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	24	9	44	0	5	3	2	0	0
PRPH	5630	hgsc.bcm.edu	37	12	49689459	49689459	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	7	4	0	0	0	0	0	0	0
KRT2	3849	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	53045499	53045499	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	117	39	120	0	0	0	0	0	0
KRT8	3856	broad.mit.edu	37	12	53298675	53298675	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	76	4	42	1	329	329	0	0	0
MDM1	56890	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	68696605	68696605	+	Silent	SNP	T	T	A	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	27	6	37	0	10	10	0	0	0
BTBD11	121551	broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	108035881	108035881	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	82	26	69	1	1	1	0	0	0
SRRM4	84530	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	119583229	119583229	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	106	28	81	0	0	0	0	0	0
ATP12A	479	broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	25265339	25265339	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	101	37	80	1	0	0	0	0	0
CTAGE10P	220429	ucsc.edu	37	13	50466686	50466686	+	RNA	SNP	G	G	A	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	124	16	117	3	0	0	0	0	0
RABGGTA	5875	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	24734893	24734893	+	Silent	SNP	C	C	T	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	116	40	119	0	27	19	8	0	0
RALGAPA1	253959	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	36143779	36143779	+	Silent	SNP	A	A	C	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	243	72	246	0	5	2	3	0	0
TTLL5	23093	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	14	76243163	76243163	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	97	21	92	0	0	0	0	0	0
NPAP1	23742	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	24923342	24923342	+	Silent	SNP	C	C	T	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	34	14	20	0	0	0	0	0	0
CILP	8483	broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	65495764	65495764	+	Missense_Mutation	SNP	C	C	G	rs185181701	alternate_allele	TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	94	29	87	0	0	0	0	0	0
ZNF75A	7627	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	3363138	3363138	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	170	84	112	0	3	1	2	0	0
LOC81691	0	broad.mit.edu;bcgsc.ca	37	16	20851720	20851720	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	70	34	73	0	0	0	0	0	0
IRX3	79191	broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	54319068	54319068	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	130	37	48	1	50	27	23	0	0
C16orf3	750	bcgsc.ca	37	16	90095558	90095558	+	Missense_Mutation	SNP	C	C	T	rs76646627		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	324	17	134	1	0	0	0	0	0
ACADVL	37	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	7127679	7127679	+	Silent	SNP	T	T	C	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	106	49	73	0	507	178	328	1	0
POLR2A	5430	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	7405000	7405000	+	Silent	SNP	G	G	A	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	140	34	88	0	0	0	0	0	0
SLC46A1	113235	ucsc.edu;bcgsc.ca	37	17	26731871	26731871	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	256	48	196	2	9	7	2	0	0
MRPL45	84311	broad.mit.edu;bcgsc.ca	37	17	36478132	36478132	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	119	63	92	2	82	28	54	0	0
GPR179	440435	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	36492994	36492994	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	78	14	25	0	0	0	0	0	0
KRTAP4-5	85289	hgsc.bcm.edu	37	17	39305800	39305800	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	69	15	12	0	0	0	0	0	0
GPATCH8	23131	hgsc.bcm.edu;bcgsc.ca	37	17	42475173	42475176	+	Frame_Shift_Del	DEL	TGAG	TGAG	-	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	TGAG	TGAG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	263	112	206	0	0	0	0	0	0
OTOP3	347741	broad.mit.edu	37	17	72942796	72942796	+	Silent	SNP	G	G	A	rs200903740		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	90	4	60	0	0	0	0	0	0
FLJ45079	0	broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	75879250	75879250	+	RNA	SNP	C	C	T	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	66	16	51	0	0	0	0	0	0
CCDC40	55036	broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	78055491	78055491	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	230	56	138	1	12	7	5	0	0
MYL12B	103910	broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	3273023	3273023	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	177	54	171	2	1283	695	587	0	1
HMHA1	23526	hgsc.bcm.edu	37	19	1081736	1081736	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	31	10	2	0	1	0	1	0	0
EVI5L	115704	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	7917990	7917990	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	112	43	79	0	19	10	9	0	0
HOOK2	29911	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	12874398	12874398	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	118	40	121	0	0	0	0	0	0
PGLYRP2	114770	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	15582776	15582776	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	88	5	59	0	0	0	0	0	0
TMEM38A	79041	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	16793291	16793291	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	133	42	92	0	8	4	4	0	0
BABAM1	29086	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	17384931	17384931	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	51	23	40	0	73	45	28	0	0
UNC13A	23025	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	17767189	17767189	+	Silent	SNP	G	G	T	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	27	7	34	0	0	0	0	0	0
SUGP2	10147	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	19106027	19106027	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	57	19	61	0	39	21	18	0	0
VSTM2B	342865	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	30018151	30018151	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	69	13	52	0	0	0	0	0	0
NUP62	23636	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	50411616	50411633	+	In_Frame_Del	DEL	GTCCATGTGCGCATTGAG	GTCCATGTGCGCATTGAG	-	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	GTCCATGTGCGCATTGAG	GTCCATGTGCGCATTGAG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	62	17	47	0	0	0	0	0	0
PRKCG	5582	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	54401854	54401854	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	71	28	52	0	0	0	0	0	0
TTC27	55622	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	33002960	33002960	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	114	40	142	1	9	8	1	0	0
FAM98A	25940	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	33813426	33813426	+	Silent	SNP	T	T	C	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	75	32	79	0	24	9	15	0	0
ANTXR1	84168	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	69409663	69409663	+	Silent	SNP	T	T	G	rs138963459		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	85	24	93	0	22	14	8	0	0
TTC31	64427	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	74718487	74718487	+	Silent	SNP	G	G	A	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	84	22	99	0	14	8	6	0	0
SUCLG1	8802	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	84652539	84652539	+	Silent	SNP	C	C	T	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	119	36	98	0	4	2	2	0	0
KCNIP3	30818	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	95976175	95976175	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	364	110	356	1	0	0	0	0	0
KCNIP3	30818	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	95976177	95976177	+	Silent	SNP	C	C	T	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	361	109	352	1	0	0	0	0	0
SLC5A7	60482	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	108604763	108604763	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	142	41	133	0	0	0	0	0	0
ZRANB3	84083	hgsc.bcm.edu;broad.mit.edu	37	2	135988115	135988115	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	96	5	94	0	6	6	0	0	0
SSB	6741	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	170667495	170667495	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	133	42	139	0	121	64	57	0	0
TNS1	7145	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	218678511	218678511	+	Silent	SNP	C	C	G	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	110	34	124	0	22	16	6	0	0
PTPRN	5798	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	220164041	220164041	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	138	57	138	1	0	0	0	0	0
PTPRN	5798	bcgsc.ca	37	2	220164916	220164916	+	Silent	SNP	A	A	G	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	45	4	46	0	0	0	0	0	0
ANKMY1	51281	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	241465102	241465102	+	Silent	SNP	C	C	T	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	121	45	118	0	0	0	0	0	0
JAG1	182	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	10653490	10653490	+	Nonsense_Mutation	SNP	A	A	C	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	94	25	49	0	20	15	5	0	0
DZANK1	55184	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	18414380	18414380	+	Silent	SNP	C	C	T	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	61	14	68	0	1	1	0	0	0
MLLT10P1	140678	bcgsc.ca	37	20	29637965	29637965	+	RNA	SNP	G	G	A	rs6119123		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	20	4	42	0	1	1	0	0	0
BPIFA1	51297	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	20	31829269	31829269	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	85	20	115	0	0	0	0	0	0
TRPC4AP	26133	broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	33622951	33622951	+	Silent	SNP	G	G	T	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	130	57	107	2	40	24	16	0	0
SS18L1	26039	hgsc.bcm.edu	37	20	60738629	60738629	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	98	43	2	0	1	1	0	0	0
LAMA5	3911	broad.mit.edu	37	20	60895706	60895706	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	73	20	18	1	38	37	1	0	0
PWP2	5822	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	21	45534138	45534138	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	85	17	89	0	1	1	0	0	0
C22orf15	150248	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	24106287	24106287	+	Silent	SNP	G	G	A	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	65	25	95	0	0	0	0	0	0
GATSL3	652968	hgsc.bcm.edu	37	22	30685454	30685454	+	Silent	SNP	C	C	T	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	56	20	8	0	3	2	1	0	0
CBY1	25776	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	39066951	39066951	+	Silent	SNP	G	G	A	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	67	14	64	0	68	41	27	0	0
KIAA0930	23313	broad.mit.edu	37	22	45599044	45599044	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	98	30	39	1	73	41	32	0	0
CAMP	820	bcgsc.ca	37	3	48266885	48266885	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	62	5	36	0	0	0	0	0	0
FAM212A	389119	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	49842183	49842183	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	305	151	93	0	1	1	0	0	0
ROBO1	6091	broad.mit.edu	37	3	79639003	79639003	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	167	11	153	0	0	0	0	0	0
ARHGAP31	57514	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	119099827	119099827	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	173	79	172	1	0	0	0	0	0
GOLGB1	2804	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	121415217	121415217	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	59	12	40	0	23	22	1	0	0
ARMC8	25852	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	137982982	137982982	+	Silent	SNP	C	C	T	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	83	24	55	0	0	0	0	0	0
RBP1	5947	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	139237296	139237296	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	86	25	69	0	43	40	3	0	0
LEPREL1	55214	ucsc.edu	37	3	189711953	189711953	+	Silent	SNP	A	A	G	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	40	4	30	0	22	22	0	0	0
TMEM44-AS1	100507297	bcgsc.ca	37	3	194309387	194309387	+	RNA	SNP	A	A	G	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	96	45	61	0	3	1	2	0	0
EXOC1	55763	hgsc.bcm.edu	37	4	56738102	56738102	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	73	4	129	0	22	22	0	0	0
REST	5978	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	57797826	57797826	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	110	43	153	0	14	12	2	0	0
RAPGEF2	9693	broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	160268070	160268070	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	72	22	72	1	9	6	3	0	0
UFSP2	55325	broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	186334930	186334930	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	145	42	149	1	33	18	15	0	0
C5orf30	90355	ucsc.edu;bcgsc.ca	37	5	102611692	102611692	+	Silent	SNP	C	C	T	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	250	87	245	3	4	2	2	0	0
GMCL1P1	64396	broad.mit.edu	37	5	177612984	177612984	+	RNA	SNP	T	T	C	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	53	4	59	0	0	0	0	0	0
NQO2	4835	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	3010268	3010268	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	104	30	123	0	0	0	0	0	0
PRPF4B	8899	bcgsc.ca	37	6	4032300	4032315	+	Frame_Shift_Del	DEL	AAGTAAAAGCAGATCC	AAGTAAAAGCAGATCC	-	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	AAGTAAAAGCAGATCC	AAGTAAAAGCAGATCC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	77	8	120	0	0	0	0	0	0
GABBR1	2550	hgsc.bcm.edu	37	6	29595420	29595420	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	34	14	5	0	6	4	2	0	0
HLA-H	3136	bcgsc.ca	37	6	29856842	29856842	+	RNA	SNP	C	C	T	rs1611620		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	56	13	60	5	16	1	15	0	0
NFKBIL1	4795	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	31526116	31526116	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	69	23	24	0	27	12	15	0	0
ZBTB22	9278	broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	33284267	33284267	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	131	57	119	1	29	16	13	0	0
LINC00336	401253	broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	33560882	33560882	+	RNA	SNP	T	T	C	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	106	44	51	0	0	0	0	0	0
HCRTR2	3062	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	55039411	55039411	+	Missense_Mutation	SNP	C	C	G	rs76774128	alternate_allele	TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	130	47	91	0	0	0	0	0	0
COL12A1	1303	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	75848659	75848659	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	63	16	64	0	2	2	0	0	0
RSPH3	83861	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	159398820	159398821	+	Frame_Shift_Del	DEL	TG	TG	-	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	TG	TG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	77	23	72	0	0	0	0	0	0
FOXK1	221937	broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	4794196	4794196	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	109	58	42	1	6	2	4	0	0
AHR	196	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	17375399	17375399	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	71	40	57	0	0	0	0	0	0
CDC14C	168448	ucsc.edu	37	7	48965435	48965435	+	RNA	SNP	C	C	T	rs71547902	bycluster	TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	118	23	80	8	0	0	0	0	0
AUTS2	26053	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	69364300	69364300	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	130	22	73	0	0	0	0	0	0
BAZ1B	9031	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	72873963	72873963	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	70	43	60	0	96	23	73	0	0
MGC72080	0	bcgsc.ca	37	7	97599479	97599479	+	RNA	SNP	A	A	G	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	311	180	195	4	169	2	167	0	0
CUX1	1523	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	101882763	101882763	+	Silent	SNP	G	G	A	rs140169027		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	158	98	57	0	4	2	2	0	0
MLL3	58508	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	151845991	151845991	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	97	23	62	0	18	10	8	0	0
MLL3	58508	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	151873882	151873883	+	Frame_Shift_Del	DEL	TT	TT	-	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	TT	TT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	164	98	98	0	0	0	0	0	0
VDAC3	7419	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	42259309	42259309	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	72	22	64	0	0	0	0	0	0
SLC7A13	157724	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	87235298	87235298	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	55	16	47	0	0	0	0	0	0
KCNS2	3788	bcgsc.ca	37	8	99440470	99440470	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	105	36	91	2	0	0	0	0	0
KIFC2	90990	broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	145694989	145694989	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	49	22	42	1	23	10	13	0	0
LINGO2	158038	broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	27950499	27950499	+	Silent	SNP	G	G	A	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	184	54	210	1	1	0	1	0	0
CEP78	84131	broad.mit.edu;bcgsc.ca	37	9	80856624	80856624	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	87	37	90	2	0	0	0	0	0
KIAA0368	23392	broad.mit.edu	37	9	114125936	114125936	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	11	4	17	0	0	0	0	0	0
CRB2	286204	broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	126125164	126125164	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	75	27	61	1	0	0	0	0	0
FIBCD1	84929	hgsc.bcm.edu	37	9	133813948	133813948	+	Missense_Mutation	SNP	T	T	C	rs199804534		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	7	7	0	0	0	0	0	0	0
RNR1	6052	bcgsc.ca	37	MT	769	769	+	RNA	SNP	G	G	A	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	305	20	2845	30	4423	4421	0	0	2
RNR1	6052	bcgsc.ca	37	MT	825	825	+	RNA	SNP	T	T	A	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	136	11	1402	26	4063	4060	1	1	1
CYTB	0	bcgsc.ca	37	MT	14808	14808	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	21	11	188	0	1	0	1	0	0
SSX6	280657	broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	47976491	47976491	+	RNA	SNP	G	G	C	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	566	163	549	0	0	0	0	0	0
SLC6A14	11254	broad.mit.edu	37	X	115568961	115568961	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	43	10	56	2	0	0	0	0	0
KRTAP4-5	85289	hgsc.bcm.edu;broad.mit.edu	37	17	39305911	39305912	+	In_Frame_Ins	INS	-	-	GCAGCAGGTGGTCCT	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	106	33	41	0	0	0	0	0	0
SIRT6	51548	broad.mit.edu	37	19	4175089	4175090	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	165	7	31	0	0	0	0	0	0
PIK3R1	5295	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	67588157	67588158	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	55	24	51	0	0	0	0	0	0
THSD7A	221981	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	11486930	11486931	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	167	84	85	0	0	0	0	0	0
ETHE1	23474	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	44030496	44030497	+	Missense_Mutation	DNP	TA	TA	AT	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	TA	TA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	131	43	143	0	0	0	0	0	0
