Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer
ABCA13	154664	broad.mit.edu	37	7	48684282	48684282	+	Missense_Mutation	SNP	G	C	C			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCA5	23461	broad.mit.edu	37	17	67243691	67243691	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCA5	23461	broad.mit.edu	37	17	67309240	67309240	+	Silent	SNP	T	C	C	rs146635038		TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCA9	10350	broad.mit.edu	37	17	66986013	66986013	+	Missense_Mutation	SNP	C	A	A	rs149991432		TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCA9	10350	broad.mit.edu	37	17	67020288	67020288	+	Intron	SNP	C	A	A			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCB8	11194	broad.mit.edu	37	7	150732736	150732736	+	Silent	SNP	G	C	C			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCC2	1244	broad.mit.edu	37	10	101603415	101603415	+	Intron	SNP	T	C	C			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCC8	6833	broad.mit.edu	37	11	17419905	17419905	+	Missense_Mutation	SNP	C	G	G			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCF2	10061	broad.mit.edu	37	7	150915920	150915920	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACAD11	84129	broad.mit.edu	37	3	132378624	132378624	+	5'UTR	SNP	G	A	A			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACER2	340485	broad.mit.edu	37	9	19446059	19446059	+	Intron	SNP	T	C	C			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM6	8755	broad.mit.edu	37	14	106092170	106092170	+	RNA	SNP	C	T	T			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM6	8755	broad.mit.edu	37	14	106539056	106539056	+	Intron	SNP	G	T	T			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM6	8755	broad.mit.edu	37	14	107095658	107095658	+	Intron	SNP	T	A	A			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS12	81792	broad.mit.edu	37	5	33662100	33662100	+	Missense_Mutation	SNP	A	T	T			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS18	170692	broad.mit.edu	37	16	77317955	77317955	+	Nonsense_Mutation	SNP	G	T	T			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS2	9509	broad.mit.edu	37	5	178548631	178548631	+	Intron	SNP	G	A	A			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS7	11173	broad.mit.edu	37	15	79082888	79082888	+	Intron	SNP	G	T	T			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTSL1	92949	broad.mit.edu	37	9	18906925	18906925	+	Intron	SNP	C	A	A			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADCY8	114	broad.mit.edu	37	8	131916424	131916424	+	Intron	SNP	C	A	A			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADD1	118	broad.mit.edu	37	4	2930188	2930190	+	In_Frame_Del	DEL	AAG	-	-			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADRBK2	157	broad.mit.edu	37	22	26000332	26000332	+	Intron	SNP	C	T	T			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADSSL1	122622	broad.mit.edu	37	14	105201358	105201358	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AES	166	broad.mit.edu	37	19	3057654	3057654	+	Intron	SNP	A	G	G			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AFF4	27125	broad.mit.edu	37	5	132232314	132232314	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AFM	173	broad.mit.edu	37	4	74363524	74363524	+	Intron	SNP	T	A	A			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AFTPH	54812	broad.mit.edu	37	2	64779295	64779295	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AGPAT6	137964	broad.mit.edu	37	8	41476485	41476485	+	Silent	SNP	G	A	A			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AIMP1	9255	broad.mit.edu	37	4	107249400	107249400	+	Missense_Mutation	SNP	G	C	C			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AK3L1	205	broad.mit.edu	37	1	65656341	65656341	+	Intron	SNP	T	A	A			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AKAP9	10142	broad.mit.edu	37	7	91609624	91609624	+	Missense_Mutation	SNP	A	T	T			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALG3	10195	broad.mit.edu	37	3	183961588	183961588	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALPK2	115701	broad.mit.edu	37	18	56202933	56202933	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALX1	8092	broad.mit.edu	37	12	85695135	85695135	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AMY2B	280	broad.mit.edu	37	1	104116869	104116869	+	Intron	SNP	A	G	G			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANK1	286	broad.mit.edu	37	8	41574386	41574386	+	Intron	SNP	C	A	A			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANK2	287	broad.mit.edu	37	4	114278877	114278877	+	Missense_Mutation	SNP	A	G	G			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANK2	287	broad.mit.edu	37	4	114279344	114279344	+	Silent	SNP	A	T	T			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANO2	57101	broad.mit.edu	37	12	5687595	5687595	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANXA10	11199	broad.mit.edu	37	4	169105948	169105948	+	Intron	SNP	A	T	T			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AP2B1	163	broad.mit.edu	37	17	33933052	33933052	+	Intron	SNP	T	C	C			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
APOB	338	broad.mit.edu	37	2	21235206	21235206	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
APOOL	139322	broad.mit.edu	37	X	84306563	84306563	+	Intron	SNP	G	C	C			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGAP31	57514	broad.mit.edu	37	3	119133448	119133448	+	Missense_Mutation	SNP	A	T	T			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGAP5	394	broad.mit.edu	37	14	32563233	32563233	+	Missense_Mutation	SNP	A	G	G			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGEF6	9459	broad.mit.edu	37	X	135789232	135789232	+	Intron	SNP	C	T	T			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGEF6	9459	broad.mit.edu	37	X	135861768	135861768	+	Intron	SNP	C	A	A			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARL4D	379	broad.mit.edu	37	17	41477386	41477386	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARMCX5	64860	broad.mit.edu	37	X	101858804	101858804	+	3'UTR	SNP	A	T	T			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARSE	415	broad.mit.edu	37	X	2878481	2878481	+	Intron	SNP	C	A	A			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AR	367	broad.mit.edu	37	X	66937280	66937280	+	Intron	SNP	G	T	T			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASXL2	55252	broad.mit.edu	37	2	25967101	25967101	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATG4A	115201	broad.mit.edu	37	X	107381398	107381398	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP13A4	84239	broad.mit.edu	37	3	193132540	193132540	+	Splice_Site	SNP	C	A	A			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP1A3	478	broad.mit.edu	37	19	42480646	42480646	+	Silent	SNP	C	T	T			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP2B2	491	broad.mit.edu	37	3	10381973	10381973	+	Missense_Mutation	SNP	A	T	T			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP2C2	9914	broad.mit.edu	37	16	84487160	84487160	+	Intron	SNP	G	T	T			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP7A	538	broad.mit.edu	37	X	77296343	77296343	+	Intron	SNP	C	A	A			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AUH	549	broad.mit.edu	37	9	94087694	94087694	+	Intron	SNP	G	A	A			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AVL9	23080	broad.mit.edu	37	7	32862811	32862811	+	Intron	SNP	G	T	T			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AVPR2	554	broad.mit.edu	37	X	153171897	153171897	+	Intron	SNP	C	A	A			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AXIN1	8312	broad.mit.edu	37	16	347265	347265	+	Intron	SNP	T	A	A			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BHLHB9	80823	broad.mit.edu	37	X	102004639	102004639	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BRP44	25874	broad.mit.edu	37	1	167889140	167889140	+	Intron	SNP	C	A	A			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BTAF1	9044	broad.mit.edu	37	10	93749274	93749274	+	Missense_Mutation	SNP	C	G	G			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BTK	695	broad.mit.edu	37	X	100615021	100615021	+	Intron	SNP	T	G	G			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C10orf140	387640	broad.mit.edu	37	10	21804176	21804176	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C10orf68	79741	broad.mit.edu	37	10	33113436	33113436	+	Intron	DEL	T	-	-			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C11orf87	399947	broad.mit.edu	37	11	109294760	109294761	+	Frame_Shift_Ins	INS	-	G	G			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C15orf27	123591	broad.mit.edu	37	15	76463513	76463513	+	Intron	SNP	A	T	T			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C15orf41	84529	broad.mit.edu	37	15	36906047	36906047	+	Intron	SNP	G	A	A			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C15orf55	256646	broad.mit.edu	37	15	34640216	34640216	+	Silent	SNP	C	T	T			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C17orf46	124783	broad.mit.edu	37	17	43332762	43332762	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1QTNF1	114897	broad.mit.edu	37	17	77042521	77042521	+	Intron	SNP	C	A	A			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf49	84066	broad.mit.edu	37	1	178482171	178482171	+	5'Flank	SNP	C	A	A			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C20orf107	388799	broad.mit.edu	37	20	55108453	55108461	+	Intron	DEL	CCTTTATGT	-	-			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C21orf29	54084	broad.mit.edu	37	21	45945460	45945460	+	Intron	SNP	A	G	G			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C2orf85	285093	broad.mit.edu	37	2	242814448	242814448	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C4orf21	55345	broad.mit.edu	37	4	113540185	113540185	+	Missense_Mutation	SNP	A	T	T			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C4orf37	285555	broad.mit.edu	37	4	98893504	98893504	+	Missense_Mutation	SNP	C	G	G			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C6orf106	64771	broad.mit.edu	37	6	34584923	34584923	+	Intron	SNP	A	G	G			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C6orf182	285753	broad.mit.edu	37	6	109468107	109468107	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C8orf79	57604	broad.mit.edu	37	8	12878877	12878877	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C9orf50	375759	broad.mit.edu	37	9	132382865	132382865	+	5'UTR	SNP	C	A	A			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C9orf86	55684	broad.mit.edu	37	9	139707383	139707383	+	Intron	SNP	G	T	T			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CA10	56934	broad.mit.edu	37	17	49710858	49710858	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CA13	377677	broad.mit.edu	37	8	86158002	86158002	+	5'UTR	SNP	C	T	T			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CADPS	8618	broad.mit.edu	37	3	62478119	62478119	+	Silent	SNP	G	T	T			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CALB2	794	broad.mit.edu	37	16	71411470	71411470	+	Intron	SNP	G	C	C			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CASC5	57082	broad.mit.edu	37	15	40912855	40912855	+	Silent	SNP	T	C	C			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CBLN1	869	broad.mit.edu	37	16	49313499	49313499	+	Missense_Mutation	SNP	A	C	C			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC21	64793	broad.mit.edu	37	1	26566285	26566285	+	Missense_Mutation	SNP	A	T	T			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC80	151887	broad.mit.edu	37	3	112357838	112357838	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCIN	881	broad.mit.edu	37	9	36170205	36170205	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCT7	10574	broad.mit.edu	37	2	73478598	73478598	+	Intron	SNP	G	T	T			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD1C	911	broad.mit.edu	37	1	158261156	158261156	+	Silent	SNP	G	A	A			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD1E	913	broad.mit.edu	37	1	158325701	158325701	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD300LB	124599	broad.mit.edu	37	17	72519042	72519042	+	Intron	DEL	G	-	-			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDC6	990	broad.mit.edu	37	17	38447622	38447622	+	Intron	SNP	G	A	A			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH4	1002	broad.mit.edu	37	20	60503225	60503225	+	Intron	SNP	G	T	T			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDHR1	92211	broad.mit.edu	37	10	85973997	85973997	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDK5RAP1	51654	broad.mit.edu	37	20	31973519	31973519	+	Silent	SNP	C	A	A			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDYL2	124359	broad.mit.edu	37	16	80718411	80718411	+	Intron	SNP	C	A	A			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CECR2	27443	broad.mit.edu	37	22	18020342	18020342	+	Silent	SNP	C	T	T			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CENPBD1	92806	broad.mit.edu	37	16	90038268	90038268	+	Silent	SNP	C	G	G			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CEP192	55125	broad.mit.edu	37	18	13095519	13095519	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CFHR2	3080	broad.mit.edu	37	1	196928066	196928066	+	Nonsense_Mutation	SNP	G	A	A			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHN2	1124	broad.mit.edu	37	7	29407610	29407610	+	Intron	SNP	G	T	T			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHRDL1	91851	broad.mit.edu	37	X	109937257	109937257	+	Intron	SNP	C	G	G			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHRNE	1145	broad.mit.edu	37	17	4804399	4804399	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHRNG	1146	broad.mit.edu	37	2	233404770	233404770	+	Silent	SNP	C	A	A			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CIB4	130106	broad.mit.edu	37	2	26864011	26864011	+	Intron	SNP	C	A	A			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CIDEA	1149	broad.mit.edu	37	18	12264486	12264486	+	Intron	SNP	G	T	T			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLCN1	1180	broad.mit.edu	37	7	143013364	143013364	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLEC1B	51266	broad.mit.edu	37	12	10147896	10147896	+	Intron	SNP	G	T	T			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLGN	1047	broad.mit.edu	37	4	141331707	141331707	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CMYA5	202333	broad.mit.edu	37	5	79026350	79026350	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNGA2	1260	broad.mit.edu	37	X	150912053	150912053	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNOT7	29883	broad.mit.edu	37	8	17090038	17090038	+	Missense_Mutation	SNP	T	A	A			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNOT7	29883	broad.mit.edu	37	8	17090042	17090042	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNR2	1269	broad.mit.edu	37	1	24201701	24201701	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTD1	124817	broad.mit.edu	37	17	40958759	40958759	+	Silent	SNP	C	T	T			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTN3	5067	broad.mit.edu	37	3	74315728	74315728	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTNAP1	8506	broad.mit.edu	37	17	40845266	40845266	+	Intron	SNP	C	A	A			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTNAP4	85445	broad.mit.edu	37	16	76461392	76461392	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL15A1	1306	broad.mit.edu	37	9	101749533	101749533	+	Intron	SNP	T	A	A			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL15A1	1306	broad.mit.edu	37	9	101784479	101784479	+	Intron	SNP	G	T	T			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL18A1	80781	broad.mit.edu	37	21	46899969	46899969	+	Intron	SNP	G	T	T			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL22A1	169044	broad.mit.edu	37	8	139701046	139701046	+	Intron	SNP	C	A	A			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL24A1	255631	broad.mit.edu	37	1	86362043	86362043	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL3A1	1281	broad.mit.edu	37	2	189868184	189868184	+	Silent	SNP	T	C	C			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL4A5	1287	broad.mit.edu	37	X	107821581	107821581	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL4A5	1287	broad.mit.edu	37	X	107823685	107823685	+	Intron	SNP	C	G	G			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL4A6	1288	broad.mit.edu	37	X	107424191	107424191	+	Silent	SNP	G	T	T			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL4A6	1288	broad.mit.edu	37	X	107448831	107448831	+	Intron	DEL	G	-	-			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL4A6	1288	broad.mit.edu	37	X	107626661	107626661	+	Intron	SNP	G	T	T			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COPB2	9276	broad.mit.edu	37	3	139076975	139076975	+	Intron	SNP	T	C	C			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COTL1	23406	broad.mit.edu	37	16	84623755	84623755	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPD	1362	broad.mit.edu	37	17	28754530	28754530	+	Silent	SNP	C	T	T			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPLX3	594855	broad.mit.edu	37	15	75119191	75119191	+	Silent	SNP	G	A	A			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPN2	1370	broad.mit.edu	37	3	194062704	194062704	+	Missense_Mutation	SNP	A	T	T			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPVL	54504	broad.mit.edu	37	7	29160641	29160641	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPXM1	56265	broad.mit.edu	37	20	2779518	2779518	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CRBN	51185	broad.mit.edu	37	3	3215645	3215645	+	Intron	SNP	T	A	A			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CREBBP	1387	broad.mit.edu	37	16	3794986	3794986	+	Intron	SNP	G	T	T	rs139387295	by1000genomes	TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CRHBP	1393	broad.mit.edu	37	5	76249973	76249973	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CRISP3	10321	broad.mit.edu	37	6	49701715	49701715	+	Intron	SNP	G	C	C			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD1	64478	broad.mit.edu	37	8	2949091	2949091	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSTF2	1478	broad.mit.edu	37	X	100086550	100086550	+	Silent	SNP	T	A	A			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTNNB1	1499	broad.mit.edu	37	3	41265541	41265541	+	5'UTR	SNP	T	G	G			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTNND1	1500	broad.mit.edu	37	11	57563083	57563083	+	Missense_Mutation	SNP	G	C	C			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTTNBP2	83992	broad.mit.edu	37	7	117423018	117423018	+	Intron	SNP	A	G	G			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CUBN	8029	broad.mit.edu	37	10	17024512	17024512	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CXCL12	6387	broad.mit.edu	37	10	44871272	44871272	+	Intron	SNP	C	A	A			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CXorf57	55086	broad.mit.edu	37	X	105879710	105879710	+	Intron	SNP	C	A	A			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CXorf59	286464	broad.mit.edu	37	X	36122683	36122683	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CXorf59	286464	broad.mit.edu	37	X	36163017	36163017	+	3'UTR	SNP	G	T	T			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYBB	1536	broad.mit.edu	37	X	37658247	37658247	+	Silent	SNP	G	T	T			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP1A1	1543	broad.mit.edu	37	15	75013022	75013022	+	Frame_Shift_Del	DEL	G	-	-			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP27A1	1593	broad.mit.edu	37	2	219674425	219674425	+	Silent	SNP	G	T	T			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP2A13	1553	broad.mit.edu	37	19	41597865	41597865	+	Intron	SNP	C	A	A			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP2C19	1557	broad.mit.edu	37	10	96534881	96534881	+	Nonsense_Mutation	SNP	G	T	T			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP2D6	1565	broad.mit.edu	37	22	42524020	42524020	+	Intron	SNP	G	T	T			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP3A5	1577	broad.mit.edu	37	7	99262907	99262907	+	Silent	SNP	A	G	G			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCAF12L2	340578	broad.mit.edu	37	X	125298776	125298776	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCLK3	85443	broad.mit.edu	37	3	36779774	36779774	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DDX26B	203522	broad.mit.edu	37	X	134681099	134681099	+	Missense_Mutation	SNP	T	A	A			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DDX26B	203522	broad.mit.edu	37	X	134711002	134711002	+	Intron	SNP	G	T	T			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DGKI	9162	broad.mit.edu	37	7	137284460	137284460	+	Intron	SNP	T	C	C			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DGKK	139189	broad.mit.edu	37	X	50119912	50119912	+	Silent	SNP	A	G	G			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DIP2B	57609	broad.mit.edu	37	12	51115032	51115032	+	Intron	SNP	G	T	T			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DLEC1	9940	broad.mit.edu	37	3	38127665	38127665	+	Intron	SNP	G	C	C			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DMBT1	1755	broad.mit.edu	37	10	124357627	124357627	+	Intron	SNP	C	G	G	rs3980983		TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DMRTB1	63948	broad.mit.edu	37	1	53930284	53930284	+	Intron	SNP	G	T	T			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH9	1770	broad.mit.edu	37	17	11757701	11757701	+	Missense_Mutation	SNP	A	T	T			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAJB3	414061	broad.mit.edu	37	2	234652413	234652413	+	Silent	SNP	G	A	A			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAJC14	85406	broad.mit.edu	37	12	56211607	56211607	+	Intron	SNP	C	A	A			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNTT	1791	broad.mit.edu	37	10	98088687	98088687	+	Intron	SNP	C	A	A			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DPEP2	64174	broad.mit.edu	37	16	68036610	68036610	+	5'Flank	SNP	G	T	T			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DPP10	57628	broad.mit.edu	37	2	116593847	116593847	+	Intron	SNP	C	A	A			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DPYSL2	1808	broad.mit.edu	37	8	26439594	26439594	+	Intron	SNP	A	G	G			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DRD3	1814	broad.mit.edu	37	3	113890615	113890615	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DSCAML1	57453	broad.mit.edu	37	11	117395626	117395626	+	Silent	SNP	T	C	C			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DSG3	1830	broad.mit.edu	37	18	29054280	29054280	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DSPP	1834	broad.mit.edu	37	4	88535090	88535090	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DST	667	broad.mit.edu	37	6	56480626	56480626	+	Intron	SNP	T	C	C			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DUOX2	50506	broad.mit.edu	37	15	45387725	45387725	+	Silent	SNP	C	A	A			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DYM	54808	broad.mit.edu	37	18	46783444	46783444	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EBF1	1879	broad.mit.edu	37	5	158139391	158139391	+	Intron	SNP	C	A	A			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ECD	11319	broad.mit.edu	37	10	74923762	74923762	+	Intron	SNP	C	A	A			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ELMO1	9844	broad.mit.edu	37	7	37256173	37256173	+	Intron	SNP	G	T	T			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPSTI1	94240	broad.mit.edu	37	13	43474415	43474416	+	Intron	INS	-	A	A			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ERC1	23085	broad.mit.edu	37	12	1299084	1299084	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ERCC6L	54821	broad.mit.edu	37	X	71426670	71426670	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ERO1LB	56605	broad.mit.edu	37	1	236388359	236388359	+	Intron	SNP	G	T	T			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ESPNL	339768	broad.mit.edu	37	2	239025474	239025474	+	Intron	SNP	G	C	C			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ESRP1	54845	broad.mit.edu	37	8	95683790	95683790	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
F8	2157	broad.mit.edu	37	X	154124611	154124611	+	Intron	SNP	G	T	T			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM135B	51059	broad.mit.edu	37	8	139180236	139180236	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM13C	220965	broad.mit.edu	37	10	61112108	61112108	+	Silent	SNP	G	C	C			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM21C	253725	broad.mit.edu	37	10	46221239	46221239	+	5'Flank	SNP	C	T	T			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM38B	63895	broad.mit.edu	37	18	10680359	10680359	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM47A	158724	broad.mit.edu	37	X	34149308	34149309	+	Frame_Shift_Ins	INS	-	A	A			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM75A2	642265	broad.mit.edu	37	9	39888226	39888226	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FANCA	2175	broad.mit.edu	37	16	89849524	89849524	+	Intron	SNP	G	A	A			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FANCA	2175	broad.mit.edu	37	16	89858586	89858586	+	Intron	SNP	T	A	A			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FASTKD3	79072	broad.mit.edu	37	5	7866922	7866922	+	Silent	SNP	G	T	T			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAT3	120114	broad.mit.edu	37	11	92525961	92525961	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAT3	120114	broad.mit.edu	37	11	92535011	92535011	+	Silent	SNP	C	A	A			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAT4	79633	broad.mit.edu	37	4	126411519	126411519	+	Silent	SNP	C	A	A	rs138057366	byFrequency	TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBN1	2200	broad.mit.edu	37	15	48757711	48757711	+	Intron	SNP	G	T	T			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBXW8	26259	broad.mit.edu	37	12	117365819	117365819	+	Intron	SNP	T	C	C			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FCRLA	84824	broad.mit.edu	37	1	161682848	161682848	+	Intron	SNP	G	T	T			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FER1L6	654463	broad.mit.edu	37	8	125079972	125079972	+	Intron	SNP	A	T	T			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FIG4	9896	broad.mit.edu	37	6	110048515	110048515	+	Intron	SNP	G	T	T			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FIG4	9896	broad.mit.edu	37	6	110048529	110048529	+	Intron	SNP	G	T	T			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLG2	388698	broad.mit.edu	37	1	152326733	152326733	+	Missense_Mutation	SNP	T	C	C			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLG2	388698	broad.mit.edu	37	1	152329975	152329975	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLJ46321	389763	broad.mit.edu	37	9	84606311	84606311	+	Missense_Mutation	SNP	G	T	T	rs147400236	by1000genomes	TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLJ46321	389763	broad.mit.edu	37	9	84608122	84608122	+	Missense_Mutation	SNP	A	T	T			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLT3	2322	broad.mit.edu	37	13	28589815	28589815	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLT4	2324	broad.mit.edu	37	5	180057362	180057362	+	Intron	SNP	G	T	T			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FMN2	56776	broad.mit.edu	37	1	240307011	240307012	+	Intron	INS	-	A	A			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FMO5	2330	broad.mit.edu	37	1	146676462	146676462	+	Intron	SNP	C	A	A			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FOXI1	2299	broad.mit.edu	37	5	169533452	169533452	+	Missense_Mutation	SNP	A	T	T			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FUT11	170384	broad.mit.edu	37	10	75532609	75532609	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABRB3	2562	broad.mit.edu	37	15	27184302	27184302	+	Intron	SNP	G	T	T			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABRG2	2566	broad.mit.edu	37	5	161580458	161580458	+	3'UTR	SNP	C	G	G			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GALNTL2	117248	broad.mit.edu	37	3	16254176	16254176	+	Frame_Shift_Del	DEL	C	-	-			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GALNTL6	442117	broad.mit.edu	37	4	173269702	173269702	+	Silent	SNP	C	T	T			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GAPVD1	26130	broad.mit.edu	37	9	128121653	128121653	+	Intron	SNP	A	G	G			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GATAD1	57798	broad.mit.edu	37	7	92080020	92080020	+	Missense_Mutation	SNP	C	G	G			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GBF1	8729	broad.mit.edu	37	10	104119880	104119880	+	Intron	SNP	A	T	T			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GCNT7	140687	broad.mit.edu	37	20	55100749	55100750	+	Intron	DEL	TG	-	-			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GFRAL	389400	broad.mit.edu	37	6	55214930	55214930	+	Silent	SNP	A	C	C			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GNAO1	2775	broad.mit.edu	37	16	56377812	56377812	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GNG11	2791	broad.mit.edu	37	7	93555509	93555509	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GORASP2	26003	broad.mit.edu	37	2	171811347	171811347	+	Intron	SNP	C	T	T			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GOT2	2806	broad.mit.edu	37	16	58752331	58752331	+	Intron	SNP	C	T	T			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GOT2	2806	broad.mit.edu	37	16	58757867	58757867	+	Intron	SNP	T	C	C			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPA33	10223	broad.mit.edu	37	1	167025041	167025041	+	Nonsense_Mutation	SNP	G	T	T			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPI	2821	broad.mit.edu	37	19	34859562	34859562	+	Missense_Mutation	SNP	G	T	T	rs11548996		TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRID1	2894	broad.mit.edu	37	10	87373323	87373323	+	Silent	SNP	G	T	T			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRIK4	2900	broad.mit.edu	37	11	120702467	120702467	+	Intron	SNP	C	A	A			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRIN2A	2903	broad.mit.edu	37	16	9857275	9857275	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GSDMA	284110	broad.mit.edu	37	17	38128807	38128807	+	Intron	SNP	G	T	T			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GSG1	83445	broad.mit.edu	37	12	13256230	13256230	+	Intron	SNP	T	C	C			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GTF3C2	2976	broad.mit.edu	37	2	27565628	27565628	+	Intron	SNP	C	A	A			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GUCY2F	2986	broad.mit.edu	37	X	108708514	108708514	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GYPC	2995	broad.mit.edu	37	2	127447807	127447807	+	Intron	SNP	C	A	A	rs56131613		TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GYPC	2995	broad.mit.edu	37	2	127453785	127453785	+	3'UTR	SNP	C	A	A			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HDAC10	83933	broad.mit.edu	37	22	50684054	50684054	+	Intron	SNP	C	A	A			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HDGFL1	154150	broad.mit.edu	37	6	22569972	22569972	+	Silent	SNP	G	C	C			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HEATR7A	727957	broad.mit.edu	37	8	145235188	145235188	+	Silent	SNP	G	T	T			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HEATR7B2	133558	broad.mit.edu	37	5	41065626	41065626	+	Intron	SNP	A	G	G			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HERC6	55008	broad.mit.edu	37	4	89363544	89363544	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HHIPL2	79802	broad.mit.edu	37	1	222717100	222717100	+	Silent	SNP	C	G	G			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HIF3A	64344	broad.mit.edu	37	19	46823599	46823599	+	Intron	SNP	C	G	G			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HIRA	7290	broad.mit.edu	37	22	19319125	19319125	+	Intron	SNP	C	G	G			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HIRA	7290	broad.mit.edu	37	22	19365417	19365417	+	Missense_Mutation	SNP	C	G	G			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HMCN1	83872	broad.mit.edu	37	1	185931617	185931617	+	Intron	SNP	C	T	T			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HMGCL	3155	broad.mit.edu	37	1	24140887	24140887	+	Intron	SNP	G	T	T			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HNF4A	3172	broad.mit.edu	37	20	43043133	43043133	+	Intron	SNP	T	C	C			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HNRNPR	10236	broad.mit.edu	37	1	23648100	23648100	+	Silent	SNP	T	A	A			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HPS4	89781	broad.mit.edu	37	22	26868863	26868863	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HS6ST2	90161	broad.mit.edu	37	X	131803237	131803237	+	Intron	SNP	C	A	A			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HSPA1L	3305	broad.mit.edu	37	6	31777930	31777930	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HTR2A	3356	broad.mit.edu	37	13	47408949	47408949	+	3'UTR	SNP	C	A	A			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HTR5A	3361	broad.mit.edu	37	7	154862977	154862977	+	Missense_Mutation	SNP	T	C	C			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HYDIN	54768	broad.mit.edu	37	16	71019123	71019123	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IGSF1	3547	broad.mit.edu	37	X	130415509	130415509	+	Intron	SNP	C	A	A			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL13RA2	3598	broad.mit.edu	37	X	114250291	114250291	+	Missense_Mutation	SNP	T	A	A			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL18RAP	8807	broad.mit.edu	37	2	103053583	103053583	+	Intron	SNP	G	T	T			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL25	64806	broad.mit.edu	37	14	23842381	23842381	+	Silent	SNP	A	T	T			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL5RA	3568	broad.mit.edu	37	3	3136995	3136995	+	Silent	SNP	A	G	G			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ILDR2	387597	broad.mit.edu	37	1	166905836	166905836	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IMP4	92856	broad.mit.edu	37	2	131100274	131100274	+	5'Flank	SNP	G	A	A			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
INO80D	54891	broad.mit.edu	37	2	206869874	206869874	+	Missense_Mutation	SNP	T	A	A			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IQUB	154865	broad.mit.edu	37	7	123151956	123151956	+	Intron	SNP	C	A	A			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGA4	3676	broad.mit.edu	37	2	182359483	182359483	+	Missense_Mutation	SNP	G	C	C			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGAD	3681	broad.mit.edu	37	16	31421615	31421615	+	Intron	SNP	A	G	G			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGAX	3687	broad.mit.edu	37	16	31391640	31391640	+	Missense_Mutation	SNP	C	G	G			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITIH5L	347365	broad.mit.edu	37	X	54781365	54781365	+	Intron	SNP	C	A	A			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITPKB	3707	broad.mit.edu	37	1	226836376	226836376	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITPR3	3710	broad.mit.edu	37	6	33644869	33644869	+	Intron	SNP	G	T	T			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
JAK1	3716	broad.mit.edu	37	1	65309979	65309979	+	Intron	SNP	T	A	A			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNH7	90134	broad.mit.edu	37	2	163374483	163374483	+	Missense_Mutation	SNP	T	C	C			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNH8	131096	broad.mit.edu	37	3	19322780	19322780	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNH8	131096	broad.mit.edu	37	3	19492583	19492583	+	Intron	SNP	G	T	T			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KDR	3791	broad.mit.edu	37	4	55968660	55968660	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1409	57578	broad.mit.edu	37	14	94046442	94046442	+	Intron	SNP	C	A	A			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1529	57653	broad.mit.edu	37	9	100013024	100013024	+	5'Flank	SNP	C	A	A			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1755	85449	broad.mit.edu	37	20	36850790	36850790	+	Intron	SNP	C	A	A			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1797	54914	broad.mit.edu	37	9	20717833	20717833	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1797	54914	broad.mit.edu	37	9	20926351	20926351	+	Missense_Mutation	SNP	A	T	T			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA2022	340533	broad.mit.edu	37	X	73963899	73963899	+	Missense_Mutation	SNP	G	C	C			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF16B	55614	broad.mit.edu	37	20	16360585	16360585	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF27	55582	broad.mit.edu	37	9	86503486	86503486	+	Missense_Mutation	SNP	A	C	C			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRAS	3845	broad.mit.edu	37	12	25398285	25398285	+	Missense_Mutation	SNP	C	A	A	rs121913530		TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRT2	3849	broad.mit.edu	37	12	53042921	53042921	+	Intron	SNP	C	A	A			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRT76	51350	broad.mit.edu	37	12	53170635	53170635	+	Silent	SNP	G	T	T			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRT7	3855	broad.mit.edu	37	12	52639362	52639362	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRT86	3892	broad.mit.edu	37	12	52647159	52647159	+	Intron	SNP	G	C	C			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRTAP11-1	337880	broad.mit.edu	37	21	32253913	32253913	+	5'Flank	SNP	C	A	A			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMB1	3912	broad.mit.edu	37	7	107603427	107603427	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LARP4B	23185	broad.mit.edu	37	10	871318	871318	+	Intron	SNP	C	A	A			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LHX9	56956	broad.mit.edu	37	1	197898182	197898182	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LILRA3	11026	broad.mit.edu	37	19	54801976	54801976	+	Silent	SNP	G	A	A			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LILRB5	10990	broad.mit.edu	37	19	54760185	54760185	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LIM2	3982	broad.mit.edu	37	19	51885853	51885853	+	Intron	SNP	C	G	G			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LIN54	132660	broad.mit.edu	37	4	83905676	83905676	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LMCD1	29995	broad.mit.edu	37	3	8590464	8590464	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC440905	440905	broad.mit.edu	37	2	130786009	130786009	+	RNA	SNP	C	A	A			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC645752	645752	broad.mit.edu	37	15	78211193	78211193	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC653113	653113	broad.mit.edu	37	12	8389666	8389666	+	Intron	SNP	G	C	C	rs144533741	by1000genomes	TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRGUK	136332	broad.mit.edu	37	7	133948743	133948743	+	3'UTR	SNP	C	A	A			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP1B	53353	broad.mit.edu	37	2	140992421	140992421	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP1B	53353	broad.mit.edu	37	2	141739653	141739653	+	Intron	SNP	C	A	A			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP2	4036	broad.mit.edu	37	2	170032886	170032886	+	Intron	SNP	G	T	T			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRPPRC	10128	broad.mit.edu	37	2	44204192	44204192	+	Splice_Site	SNP	C	T	T			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC41	10489	broad.mit.edu	37	1	46746874	46746874	+	Missense_Mutation	SNP	G	T	T	rs140475848		TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC59	55379	broad.mit.edu	37	17	48462617	48462617	+	Missense_Mutation	SNP	T	C	C			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRTM1	347730	broad.mit.edu	37	2	80530299	80530299	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRTM1	57408	broad.mit.edu	37	3	54961995	54961995	+	Translation_Start_Site	SNP	G	T	T			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LSP1	4046	broad.mit.edu	37	11	1905541	1905541	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MACROD2	140733	broad.mit.edu	37	20	16025241	16025241	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAGEA12	4111	broad.mit.edu	37	X	151899893	151899893	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAGEC1	9947	broad.mit.edu	37	X	140993253	140993253	+	Missense_Mutation	SNP	T	A	A			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAGEC3	139081	broad.mit.edu	37	X	140953460	140953460	+	Intron	SNP	C	A	A			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAGEE1	57692	broad.mit.edu	37	X	75649077	75649077	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAGT1	84061	broad.mit.edu	37	X	77086363	77086363	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAMLD1	10046	broad.mit.edu	37	X	149638184	149638184	+	Missense_Mutation	SNP	G	C	C			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAMLD1	10046	broad.mit.edu	37	X	149638523	149638523	+	Missense_Mutation	SNP	G	C	C			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAMLD1	10046	broad.mit.edu	37	X	149638601	149638601	+	Silent	SNP	G	A	A			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAMLD1	10046	broad.mit.edu	37	X	149638622	149638622	+	Silent	SNP	G	A	A			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAMLD1	10046	broad.mit.edu	37	X	149638634	149638634	+	Silent	SNP	G	A	A	rs150886306		TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAMLD1	10046	broad.mit.edu	37	X	149639226	149639226	+	Missense_Mutation	SNP	G	C	C			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAOB	4129	broad.mit.edu	37	X	43656531	43656531	+	Intron	SNP	A	G	G			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAP1A	4130	broad.mit.edu	37	15	43819588	43819588	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAPK7	5598	broad.mit.edu	37	17	19285382	19285382	+	Missense_Mutation	SNP	C	G	G			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MARCH1	55016	broad.mit.edu	37	4	165111035	165111035	+	Intron	SNP	A	G	G			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MARCH6	10299	broad.mit.edu	37	5	10407054	10407054	+	Intron	SNP	A	G	G			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MCTS1	28985	broad.mit.edu	37	X	119738114	119738114	+	Intron	SNP	C	T	T			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MDGA1	266727	broad.mit.edu	37	6	37622419	37622419	+	Intron	SNP	C	A	A			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MDH1B	130752	broad.mit.edu	37	2	207610311	207610311	+	Intron	SNP	A	C	C			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MDS2	259283	broad.mit.edu	37	1	23954238	23954238	+	Intron	SNP	C	T	T			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MED12L	116931	broad.mit.edu	37	3	150881712	150881712	+	Silent	SNP	G	T	T			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MED12	9968	broad.mit.edu	37	X	70342990	70342990	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MESP2	145873	broad.mit.edu	37	15	90320536	90320536	+	Intron	SNP	G	T	T			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MGAM	8972	broad.mit.edu	37	7	141727038	141727038	+	Intron	SNP	G	T	T			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MGAT4A	11320	broad.mit.edu	37	2	99291448	99291448	+	Intron	SNP	C	A	A			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MGC72080	389538	broad.mit.edu	37	7	97528256	97528256	+	Intron	SNP	C	G	G			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MIER2	54531	broad.mit.edu	37	19	313534	313534	+	Silent	SNP	C	G	G			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MIR1202	100302259	broad.mit.edu	37	6	156267890	156267890	+	5'Flank	SNP	C	G	G			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MIR516A1	574498	broad.mit.edu	37	19	54259822	54259822	+	5'Flank	SNP	A	T	T			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MKL1	57591	broad.mit.edu	37	22	40859299	40859299	+	5'UTR	SNP	C	A	A			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MLL2	8085	broad.mit.edu	37	12	49435239	49435239	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MLXIPL	51085	broad.mit.edu	37	7	73013691	73013691	+	Intron	SNP	T	C	C			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MMP8	4317	broad.mit.edu	37	11	102592588	102592588	+	Intron	SNP	T	A	A			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MOAP1	64112	broad.mit.edu	37	14	93649642	93649642	+	Missense_Mutation	SNP	C	G	G			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MOBKL3	25843	broad.mit.edu	37	2	198400420	198400420	+	Intron	SNP	T	C	C			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MOGS	7841	broad.mit.edu	37	2	74688860	74688860	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MORC1	27136	broad.mit.edu	37	3	108746749	108746749	+	Intron	SNP	C	T	T			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MOSPD2	158747	broad.mit.edu	37	X	14934407	14934407	+	Silent	SNP	G	A	A			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MPP1	4354	broad.mit.edu	37	X	154007556	154007556	+	Missense_Mutation	SNP	A	T	T			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MRO	83876	broad.mit.edu	37	18	48325705	48325705	+	3'UTR	SNP	G	A	A			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC16	94025	broad.mit.edu	37	19	9064438	9064438	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC16	94025	broad.mit.edu	37	19	9073402	9073402	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MXRA5	25878	broad.mit.edu	37	X	3235287	3235287	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYBPC2	4606	broad.mit.edu	37	19	50957526	50957526	+	Frame_Shift_Del	DEL	C	-	-			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYEOV	26579	broad.mit.edu	37	11	69062910	69062910	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH11	4629	broad.mit.edu	37	16	15839064	15839064	+	Silent	SNP	G	T	T			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH8	4626	broad.mit.edu	37	17	10298575	10298575	+	Missense_Mutation	SNP	C	G	G			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH8	4626	broad.mit.edu	37	17	10301785	10301785	+	Missense_Mutation	SNP	C	A	A	rs147143044		TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH9	4627	broad.mit.edu	37	22	36708162	36708162	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYL10	93408	broad.mit.edu	37	7	101265451	101265451	+	Nonsense_Mutation	SNP	C	A	A			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYL1	4632	broad.mit.edu	37	2	211158990	211158990	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO10	4651	broad.mit.edu	37	5	16682156	16682157	+	Intron	DEL	TT	-	-			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO18B	84700	broad.mit.edu	37	22	26165096	26165096	+	Missense_Mutation	SNP	G	C	C			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO1D	4642	broad.mit.edu	37	17	31075963	31075963	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO1D	4642	broad.mit.edu	37	17	31075976	31075976	+	Nonsense_Mutation	SNP	G	A	A			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYOM2	9172	broad.mit.edu	37	8	2027068	2027068	+	Intron	SNP	G	C	C			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYST4	23522	broad.mit.edu	37	10	76781967	76781967	+	Missense_Mutation	SNP	A	T	T			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NAV3	89795	broad.mit.edu	37	12	78520992	78520992	+	Intron	SNP	T	A	A			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBPF10	100132406	broad.mit.edu	37	1	145304772	145304772	+	Intron	SNP	G	T	T			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCKAP5	344148	broad.mit.edu	37	2	133636363	133636363	+	Intron	SNP	G	T	T			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NEB	4703	broad.mit.edu	37	2	152527689	152527689	+	Missense_Mutation	SNP	T	C	C			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NELL2	4753	broad.mit.edu	37	12	45269392	45269392	+	Intron	SNP	C	A	A			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NEU4	129807	broad.mit.edu	37	2	242757727	242757727	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NHS	4810	broad.mit.edu	37	X	17744628	17744628	+	Missense_Mutation	SNP	T	C	C			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NKAPL	222698	broad.mit.edu	37	6	28227314	28227314	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLRP2	55655	broad.mit.edu	37	19	55501959	55501959	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLRP5	126206	broad.mit.edu	37	19	56520127	56520127	+	Intron	SNP	C	G	G			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NOMO1	23420	broad.mit.edu	37	16	14989555	14989555	+	3'UTR	SNP	C	A	A			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NOP2	4839	broad.mit.edu	37	12	6670020	6670020	+	Intron	SNP	C	T	T			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NOX4	50507	broad.mit.edu	37	11	89068944	89068944	+	Intron	SNP	T	C	C			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NPAT	4863	broad.mit.edu	37	11	108057265	108057265	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NSD1	64324	broad.mit.edu	37	5	176721186	176721186	+	Missense_Mutation	SNP	T	G	G			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NTNG1	22854	broad.mit.edu	37	1	107937773	107937773	+	Intron	SNP	C	T	T			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NTRK2	4915	broad.mit.edu	37	9	87636230	87636230	+	Missense_Mutation	SNP	T	A	A			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NTRK3	4916	broad.mit.edu	37	15	88474461	88474461	+	Intron	SNP	G	A	A			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NUDT14	256281	broad.mit.edu	37	14	105643124	105643124	+	Intron	SNP	C	A	A			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NXF4	55999	broad.mit.edu	37	X	101818324	101818324	+	RNA	SNP	T	A	A			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NXPH3	11248	broad.mit.edu	37	17	47656499	47656499	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ODZ1	10178	broad.mit.edu	37	X	123515111	123515111	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OFD1	8481	broad.mit.edu	37	X	13779148	13779148	+	Intron	SNP	G	T	T			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OGG1	4968	broad.mit.edu	37	3	9792684	9792684	+	Missense_Mutation	SNP	A	G	G			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OOEP	441161	broad.mit.edu	37	6	74078997	74078997	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR10R2	343406	broad.mit.edu	37	1	158450421	158450421	+	Nonsense_Mutation	SNP	G	T	T			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR1C1	26188	broad.mit.edu	37	1	247921322	247921322	+	Silent	SNP	G	A	A			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR1L8	138881	broad.mit.edu	37	9	125330565	125330565	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2G6	391211	broad.mit.edu	37	1	248685264	248685264	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2J3	442186	broad.mit.edu	37	6	29079836	29079836	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2L13	284521	broad.mit.edu	37	1	248167377	248167377	+	Intron	SNP	C	G	G			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2L13	284521	broad.mit.edu	37	1	248247659	248247659	+	Intron	SNP	G	C	C			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2M5	127059	broad.mit.edu	37	1	248309050	248309050	+	Missense_Mutation	SNP	A	T	T			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2T8	343172	broad.mit.edu	37	1	248084558	248084558	+	Missense_Mutation	SNP	C	G	G			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4C15	81309	broad.mit.edu	37	11	55322475	55322475	+	Missense_Mutation	SNP	G	C	C			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4D10	390197	broad.mit.edu	37	11	59245669	59245669	+	Missense_Mutation	SNP	A	G	G			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4F6	390648	broad.mit.edu	37	15	102345883	102345883	+	5'Flank	SNP	C	A	A			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR51F2	119694	broad.mit.edu	37	11	4843600	4843600	+	Missense_Mutation	SNP	A	T	T			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR51L1	119682	broad.mit.edu	37	11	5020470	5020470	+	Silent	SNP	G	T	T			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR51V1	283111	broad.mit.edu	37	11	5221508	5221508	+	Silent	SNP	A	G	G			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR52A5	390054	broad.mit.edu	37	11	5153561	5153561	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR52K1	390036	broad.mit.edu	37	11	4510393	4510393	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR5AN1	390195	broad.mit.edu	37	11	59132051	59132051	+	Silent	SNP	G	T	T			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR8D1	283159	broad.mit.edu	37	11	124180365	124180365	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR8I2	120586	broad.mit.edu	37	11	55860901	55860901	+	Silent	SNP	T	C	C			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OTOF	9381	broad.mit.edu	37	2	26697098	26697098	+	Intron	SNP	C	G	G			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OTOS	150677	broad.mit.edu	37	2	241078631	241078631	+	Silent	SNP	G	A	A			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
P2RX7	5027	broad.mit.edu	37	12	121600296	121600296	+	Missense_Mutation	SNP	C	G	G			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
P4HB	5034	broad.mit.edu	37	17	79813036	79813036	+	Silent	SNP	C	A	A			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAK7	57144	broad.mit.edu	37	20	9524847	9524847	+	Intron	SNP	C	G	G			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAK7	57144	broad.mit.edu	37	20	9543473	9543473	+	Intron	SNP	C	T	T			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAK7	57144	broad.mit.edu	37	20	9546388	9546388	+	Intron	SNP	A	T	T			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PALM2-AKAP2	445815	broad.mit.edu	37	9	112898590	112898590	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAPPA2	60676	broad.mit.edu	37	1	176668684	176668684	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAPPA2	60676	broad.mit.edu	37	1	176680889	176680889	+	Intron	SNP	G	T	T			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAPPA	5069	broad.mit.edu	37	9	119139782	119139782	+	Intron	SNP	A	G	G			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PASD1	139135	broad.mit.edu	37	X	150841005	150841005	+	Silent	SNP	C	A	A			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH10	57575	broad.mit.edu	37	4	134075550	134075550	+	Intron	SNP	T	G	G			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCSK1	5122	broad.mit.edu	37	5	95761538	95761538	+	Nonsense_Mutation	SNP	G	A	A			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE1A	5136	broad.mit.edu	37	2	183051238	183051238	+	Nonsense_Mutation	SNP	C	A	A			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE5A	8654	broad.mit.edu	37	4	120432185	120432185	+	Intron	SNP	A	G	G			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDZD4	57595	broad.mit.edu	37	X	153069157	153069157	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDZD4	57595	broad.mit.edu	37	X	153095669	153095669	+	Intron	SNP	C	T	T			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PGK2	5232	broad.mit.edu	37	6	49754747	49754747	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PHF6	84295	broad.mit.edu	37	X	133527957	133527957	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PHF6	84295	broad.mit.edu	37	X	133549067	133549067	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIH1D2	120379	broad.mit.edu	37	11	111941514	111941514	+	Intron	SNP	A	T	T			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PISD	23761	broad.mit.edu	37	22	32058294	32058294	+	5'Flank	SNP	C	A	A			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PKP1	5317	broad.mit.edu	37	1	201286626	201286626	+	Intron	SNP	C	T	T			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PKP2	5318	broad.mit.edu	37	12	33021797	33021797	+	Intron	SNP	C	A	A			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLCH1	23007	broad.mit.edu	37	3	155200774	155200774	+	Missense_Mutation	SNP	T	A	A			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLCL1	5334	broad.mit.edu	37	2	198966095	198966095	+	Intron	SNP	T	C	C			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLCXD1	55344	broad.mit.edu	37	X	209615	209615	+	Intron	SNP	G	T	T			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLP1	5354	broad.mit.edu	37	X	103043326	103043327	+	Intron	DNP	CC	AA	AA			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PNPLA7	375775	broad.mit.edu	37	9	140356755	140356755	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POLA1	5422	broad.mit.edu	37	X	24948526	24948526	+	Intron	SNP	C	A	A			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POTEG	404785	broad.mit.edu	37	14	19553724	19553724	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPHLN1	51535	broad.mit.edu	37	12	42825924	42825924	+	Intron	SNP	C	G	G			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPP1R1A	5502	broad.mit.edu	37	12	54975870	54975870	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPP1R9A	55607	broad.mit.edu	37	7	94791228	94791228	+	Missense_Mutation	SNP	G	C	C			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPP2R2C	5522	broad.mit.edu	37	4	6383623	6383623	+	Intron	SNP	T	A	A			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRDM10	56980	broad.mit.edu	37	11	129801996	129801996	+	Splice_Site	SNP	C	A	A			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRDM9	56979	broad.mit.edu	37	5	23527621	23527621	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRKCG	5582	broad.mit.edu	37	19	54396639	54396639	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PROS1	5627	broad.mit.edu	37	3	93605343	93605343	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRR12	57479	broad.mit.edu	37	19	50128887	50128887	+	3'UTR	SNP	G	C	C			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRRG3	79057	broad.mit.edu	37	X	150867152	150867152	+	Intron	SNP	T	A	A			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRSS1	5644	broad.mit.edu	37	7	142460174	142460174	+	Intron	SNP	C	T	T			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRSS38	339501	broad.mit.edu	37	1	228033666	228033666	+	Silent	SNP	G	C	C			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSG1	5669	broad.mit.edu	37	19	43348817	43348817	+	Intron	SNP	G	T	T			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSG4	5672	broad.mit.edu	37	19	43707841	43707841	+	Intron	SNP	G	T	T			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSG5	5673	broad.mit.edu	37	19	43683099	43683099	+	Intron	SNP	G	T	T			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSIP1	11168	broad.mit.edu	37	9	15470075	15470075	+	Intron	SNP	T	C	C			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSMA8	143471	broad.mit.edu	37	18	23751282	23751282	+	Intron	SNP	G	A	A			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTDSS2	81490	broad.mit.edu	37	11	488416	488416	+	Intron	SNP	G	A	A			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTENP1	11191	broad.mit.edu	37	9	33676082	33676082	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTGFR	5737	broad.mit.edu	37	1	79002052	79002052	+	Intron	SNP	G	C	C			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRM	5797	broad.mit.edu	37	18	8113797	8113797	+	Intron	SNP	G	C	C			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRN2	5799	broad.mit.edu	37	7	157929352	157929352	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRZ1	5803	broad.mit.edu	37	7	121651440	121651440	+	Silent	SNP	C	A	A			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PVRL2	5819	broad.mit.edu	37	19	45368461	45368461	+	Intron	SNP	G	T	T			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAB33A	9363	broad.mit.edu	37	X	129318306	129318306	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RABEPK	10244	broad.mit.edu	37	9	127975856	127975856	+	Intron	SNP	A	G	G			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RASGRF2	5924	broad.mit.edu	37	5	80364046	80364046	+	Intron	SNP	C	T	T			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RASGRF2	5924	broad.mit.edu	37	5	80381539	80381539	+	Intron	SNP	C	T	T			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RASGRP3	25780	broad.mit.edu	37	2	33747045	33747045	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RBM26	64062	broad.mit.edu	37	13	79943174	79943174	+	Intron	SNP	A	T	T			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RCVRN	5957	broad.mit.edu	37	17	9808086	9808086	+	Intron	SNP	G	T	T			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
REG1B	5968	broad.mit.edu	37	2	79313697	79313697	+	Intron	SNP	A	G	G			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
REN	5972	broad.mit.edu	37	1	204126245	204126245	+	Intron	SNP	A	G	G	rs11571087	by1000genomes	TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RGS5	8490	broad.mit.edu	37	1	163138072	163138073	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RIMBP2	23504	broad.mit.edu	37	12	130912844	130912844	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RIT2	6014	broad.mit.edu	37	18	40613901	40613901	+	Intron	SNP	T	A	A			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RLTPR	146206	broad.mit.edu	37	16	67683455	67683455	+	Frame_Shift_Del	DEL	G	-	-			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNF144B	255488	broad.mit.edu	37	6	18399839	18399839	+	Frame_Shift_Del	DEL	C	-	-			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RP1L1	94137	broad.mit.edu	37	8	10470413	10470413	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RP1	6101	broad.mit.edu	37	8	55609441	55609441	+	Intron	SNP	A	T	T			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPGRIP1L	23322	broad.mit.edu	37	16	53706901	53706901	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPGR	6103	broad.mit.edu	37	X	38132681	38132681	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPL23A	6147	broad.mit.edu	37	17	27050936	27050936	+	3'UTR	SNP	T	C	C			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPL41	6171	broad.mit.edu	37	12	56510423	56510423	+	5'UTR	SNP	G	C	C			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RRAGB	10325	broad.mit.edu	37	X	55784734	55784734	+	Silent	SNP	G	C	C			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RRH	10692	broad.mit.edu	37	4	110763780	110763780	+	Nonsense_Mutation	SNP	C	A	A			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RSPO1	284654	broad.mit.edu	37	1	38095323	38095323	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RSPRY1	89970	broad.mit.edu	37	16	57247101	57247101	+	Intron	SNP	C	T	T			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RTTN	25914	broad.mit.edu	37	18	67860783	67860783	+	Intron	SNP	A	G	G			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR2	6262	broad.mit.edu	37	1	237494303	237494303	+	Intron	SNP	G	T	T			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR2	6262	broad.mit.edu	37	1	237666857	237666857	+	Intron	SNP	C	A	A			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR2	6262	broad.mit.edu	37	1	237850810	237850810	+	Intron	SNP	G	T	T			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR2	6262	broad.mit.edu	37	1	237948095	237948095	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SALL1	6299	broad.mit.edu	37	16	51173271	51173271	+	Silent	SNP	G	A	A			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SAMD9L	219285	broad.mit.edu	37	7	92762064	92762064	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SAMHD1	25939	broad.mit.edu	37	20	35532555	35532555	+	Intron	SNP	C	T	T			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SASH1	23328	broad.mit.edu	37	6	148761293	148761293	+	Intron	SNP	G	T	T	rs149141793	by1000genomes	TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCGB3A1	92304	broad.mit.edu	37	5	180017711	180017711	+	Silent	SNP	C	A	A			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCGN	10590	broad.mit.edu	37	6	25669683	25669683	+	Intron	SNP	A	G	G			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCN10A	6336	broad.mit.edu	37	3	38791551	38791551	+	Intron	SNP	G	T	T	rs138063699	by1000genomes	TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCN3A	6328	broad.mit.edu	37	2	166019136	166019136	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCN8A	6334	broad.mit.edu	37	12	52168315	52168315	+	Intron	SNP	G	T	T			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SDCCAG3	10807	broad.mit.edu	37	9	139304594	139304594	+	Silent	SNP	C	A	A			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SDHAP2	727956	broad.mit.edu	37	3	195398007	195398007	+	5'UTR	SNP	A	T	T			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEC63	11231	broad.mit.edu	37	6	108197891	108197891	+	Intron	SNP	A	G	G			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SERPINA13	388007	broad.mit.edu	37	14	95111465	95111465	+	Intron	SNP	C	A	A			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SERPING1	710	broad.mit.edu	37	11	57369417	57369417	+	Intron	SNP	C	A	A			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SESN1	27244	broad.mit.edu	37	6	109309721	109309721	+	Intron	SNP	T	A	A			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEZ6L	23544	broad.mit.edu	37	22	26707665	26707665	+	Intron	SNP	T	C	C			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SFTPA1	653509	broad.mit.edu	37	10	81371930	81371930	+	Intron	SNP	A	T	T			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SFTPA2	729238	broad.mit.edu	37	10	81318891	81318891	+	Intron	SNP	T	A	A			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SGIP1	84251	broad.mit.edu	37	1	67155846	67155846	+	Intron	DEL	T	-	-			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SGOL1	151648	broad.mit.edu	37	3	20216127	20216127	+	Missense_Mutation	SNP	T	C	C			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SH3BP5L	80851	broad.mit.edu	37	1	249110823	249110823	+	Silent	SNP	C	A	A			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SHANK1	50944	broad.mit.edu	37	19	51220030	51220030	+	Silent	SNP	A	G	G			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SIGLEC6	946	broad.mit.edu	37	19	52023487	52023487	+	Frame_Shift_Del	DEL	G	-	-			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SIRPA	140885	broad.mit.edu	37	20	1896081	1896081	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC13A3	64849	broad.mit.edu	37	20	45192211	45192211	+	Intron	SNP	A	T	T			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC16A9	220963	broad.mit.edu	37	10	61414391	61414391	+	Intron	SNP	C	A	A			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC17A1	6568	broad.mit.edu	37	6	25799037	25799037	+	Silent	SNP	T	C	C			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC1A6	6511	broad.mit.edu	37	19	15075052	15075052	+	Intron	SNP	G	T	T			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC25A26	115286	broad.mit.edu	37	3	66413339	66413339	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC26A9	115019	broad.mit.edu	37	1	205897189	205897189	+	Intron	SNP	C	T	T			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC27A1	376497	broad.mit.edu	37	19	17599848	17599848	+	Silent	SNP	C	T	T			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC2A5	6518	broad.mit.edu	37	1	9129448	9129448	+	Intron	SNP	C	A	A			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC38A6	145389	broad.mit.edu	37	14	61519223	61519223	+	Intron	SNP	G	C	C			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC39A5	283375	broad.mit.edu	37	12	56629470	56629470	+	Nonsense_Mutation	SNP	C	T	T			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC44A5	204962	broad.mit.edu	37	1	75708683	75708683	+	Missense_Mutation	SNP	T	A	A			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC4A3	6508	broad.mit.edu	37	2	220495100	220495100	+	Intron	SNP	C	A	A			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC6A12	6539	broad.mit.edu	37	12	313937	313937	+	Intron	SNP	T	C	C			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC6A14	11254	broad.mit.edu	37	X	115574996	115574996	+	Intron	SNP	A	G	G			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC6A2	6530	broad.mit.edu	37	16	55728015	55728015	+	Missense_Mutation	SNP	A	T	T			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC7A13	157724	broad.mit.edu	37	8	87242421	87242421	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC7A3	84889	broad.mit.edu	37	X	70149736	70149736	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLCO4A1	28231	broad.mit.edu	37	20	61303031	61303031	+	Intron	SNP	G	T	T			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLFN12L	342615	broad.mit.edu	37	17	33806774	33806774	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLIT3	6586	broad.mit.edu	37	5	168180932	168180932	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLITRK2	84631	broad.mit.edu	37	X	144906317	144906317	+	Missense_Mutation	SNP	C	G	G	rs148553713		TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLITRK4	139065	broad.mit.edu	37	X	142717965	142717965	+	Silent	SNP	G	T	T			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMARCA1	6594	broad.mit.edu	37	X	128582495	128582495	+	Intron	SNP	G	A	A			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMC6	79677	broad.mit.edu	37	2	17912967	17912967	+	Intron	SNP	C	G	G			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMS	6611	broad.mit.edu	37	X	21989934	21989934	+	Intron	SNP	G	C	C			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMYD4	114826	broad.mit.edu	37	17	1690044	1690044	+	Intron	SNP	C	T	T			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNORD115-1	338433	broad.mit.edu	37	15	25415785	25415785	+	5'Flank	SNP	G	C	C			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNTB1	6641	broad.mit.edu	37	8	121706136	121706136	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNTG1	54212	broad.mit.edu	37	8	51362272	51362272	+	Silent	SNP	C	G	G			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPAST	6683	broad.mit.edu	37	2	32372239	32372239	+	Intron	SNP	A	G	G			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPATC1	375686	broad.mit.edu	37	8	145095635	145095635	+	Missense_Mutation	SNP	T	A	A			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPDYE3	441272	broad.mit.edu	37	7	99918570	99918570	+	3'UTR	SNP	T	C	C			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPG7	6687	broad.mit.edu	37	16	89598377	89598377	+	Silent	SNP	C	A	A			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SRD5A2	6716	broad.mit.edu	37	2	31806000	31806000	+	5'UTR	SNP	C	A	A			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SRPK3	26576	broad.mit.edu	37	X	153048470	153048470	+	Silent	SNP	C	A	A			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SRRM1	10250	broad.mit.edu	37	1	24993263	24993263	+	Intron	SNP	C	A	A			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SSTR4	6754	broad.mit.edu	37	20	23016906	23016906	+	Silent	SNP	G	T	T	rs72547257		TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SSX8	280659	broad.mit.edu	37	X	52662442	52662442	+	RNA	SNP	C	A	A			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ST18	9705	broad.mit.edu	37	8	53028757	53028757	+	Intron	SNP	T	A	A			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STAB1	23166	broad.mit.edu	37	3	52555544	52555545	+	Intron	INS	-	C	C	rs72947535	by1000genomes	TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STAB1	23166	broad.mit.edu	37	3	52555556	52555556	+	Intron	SNP	G	A	A			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STAB2	55576	broad.mit.edu	37	12	104144339	104144339	+	Intron	DEL	C	-	-			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STARD4	134429	broad.mit.edu	37	5	110835458	110835458	+	3'UTR	SNP	T	A	A			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STK31	56164	broad.mit.edu	37	7	23823393	23823393	+	Intron	SNP	C	T	T			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STK4	6789	broad.mit.edu	37	20	43625743	43625743	+	Intron	SNP	G	T	T			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STRBP	55342	broad.mit.edu	37	9	125902103	125902103	+	Intron	SNP	A	G	G			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STT3B	201595	broad.mit.edu	37	3	31659293	31659293	+	Intron	SNP	G	T	T			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STX5	6811	broad.mit.edu	37	11	62591579	62591579	+	Intron	SNP	G	A	A			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYCP2L	221711	broad.mit.edu	37	6	10964126	10964126	+	Intron	SNP	C	A	A			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYMPK	8189	broad.mit.edu	37	19	46324620	46324620	+	Intron	SNP	G	T	T			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYT16	83851	broad.mit.edu	37	14	62462844	62462844	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAF1	6872	broad.mit.edu	37	X	70607399	70607399	+	Intron	SNP	A	T	T			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAF1	6872	broad.mit.edu	37	X	70678026	70678026	+	Intron	SNP	G	C	C			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAF4B	6875	broad.mit.edu	37	18	23895129	23895129	+	Intron	SNP	A	T	T			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TANC2	26115	broad.mit.edu	37	17	61498459	61498459	+	Nonsense_Mutation	SNP	C	T	T			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAT	6898	broad.mit.edu	37	16	71601980	71601980	+	3'UTR	SNP	G	A	A			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBC1D8	11138	broad.mit.edu	37	2	101666806	101666806	+	Intron	SNP	G	A	A			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBR1	10716	broad.mit.edu	37	2	162274750	162274750	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TCEA3	6920	broad.mit.edu	37	1	23743829	23743829	+	Missense_Mutation	SNP	T	A	A			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TCERG1	10915	broad.mit.edu	37	5	145838723	145838723	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TCF12	6938	broad.mit.edu	37	15	57539173	57539173	+	Intron	SNP	C	A	A			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TCF4	6925	broad.mit.edu	37	18	52896360	52896360	+	Intron	SNP	T	A	A			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TCHP	84260	broad.mit.edu	37	12	110348913	110348913	+	Nonsense_Mutation	SNP	G	T	T			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TDGF1	6997	broad.mit.edu	37	3	46621261	46621261	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TDRD6	221400	broad.mit.edu	37	6	46658183	46658183	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TECTA	7007	broad.mit.edu	37	11	120998454	120998454	+	Intron	SNP	G	A	A			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TET1	80312	broad.mit.edu	37	10	70404986	70404986	+	Missense_Mutation	SNP	T	G	G			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TEX10	54881	broad.mit.edu	37	9	103064619	103064619	+	Intron	SNP	G	A	A			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TFAP2A	7020	broad.mit.edu	37	6	10400611	10400611	+	Intron	SNP	C	A	A			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TFAP2A	7020	broad.mit.edu	37	6	10407101	10407101	+	Intron	SNP	A	G	G			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TGM6	343641	broad.mit.edu	37	20	2411621	2411621	+	Missense_Mutation	SNP	T	A	A			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TG	7038	broad.mit.edu	37	8	133953768	133953768	+	Silent	SNP	C	A	A			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
THBS2	7058	broad.mit.edu	37	6	169626329	169626329	+	Silent	SNP	A	T	T			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
THOC2	57187	broad.mit.edu	37	X	122765624	122765624	+	Nonsense_Mutation	SNP	G	T	T			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TIMM13	26517	broad.mit.edu	37	19	2427391	2427391	+	Intron	SNP	C	G	G			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TIMM17B	10245	broad.mit.edu	37	X	48754088	48754088	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TLE6	79816	broad.mit.edu	37	19	2989238	2989238	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TLN1	7094	broad.mit.edu	37	9	35725188	35725188	+	Intron	SNP	G	C	C			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMCO7	79613	broad.mit.edu	37	16	68894053	68894053	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEFF1	8577	broad.mit.edu	37	9	103279049	103279049	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM132B	114795	broad.mit.edu	37	12	126137173	126137173	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM180	79847	broad.mit.edu	37	10	104232541	104232541	+	Intron	SNP	C	A	A			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM87B	84910	broad.mit.edu	37	2	112856327	112856327	+	Intron	SNP	A	G	G			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMTC1	83857	broad.mit.edu	37	12	29911688	29911688	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMTC2	160335	broad.mit.edu	37	12	83358817	83358817	+	Missense_Mutation	SNP	A	T	T			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNR	7143	broad.mit.edu	37	1	175372256	175372256	+	Intron	SNP	C	A	A			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TOE1	114034	broad.mit.edu	37	1	45808733	45808733	+	Intron	SNP	A	G	G			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TP53	7157	broad.mit.edu	37	17	7577535	7577535	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRDN	10345	broad.mit.edu	37	6	123892215	123892215	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRMT1	55621	broad.mit.edu	37	19	13223573	13223573	+	Silent	SNP	C	A	A	rs147062421	byFrequency	TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPA1	8989	broad.mit.edu	37	8	72942164	72942164	+	Missense_Mutation	SNP	T	A	A			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPC5	7224	broad.mit.edu	37	X	111090471	111090471	+	Missense_Mutation	SNP	T	A	A	rs3027722		TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPM1	4308	broad.mit.edu	37	15	31360169	31360169	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPM7	54822	broad.mit.edu	37	15	50955118	50955118	+	Intron	SNP	C	A	A			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPS1	7227	broad.mit.edu	37	8	116616574	116616574	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRRAP	8295	broad.mit.edu	37	7	98495465	98495465	+	Missense_Mutation	SNP	G	C	C			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TSHZ1	10194	broad.mit.edu	37	18	72998565	72998565	+	Silent	SNP	C	G	G			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TSHZ2	128553	broad.mit.edu	37	20	51872011	51872011	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TSHZ3	57616	broad.mit.edu	37	19	31768256	31768256	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TSLP	85480	broad.mit.edu	37	5	110407675	110407675	+	Nonsense_Mutation	SNP	C	A	A			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TSPAN15	23555	broad.mit.edu	37	10	71265915	71265915	+	Silent	SNP	C	A	A			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTBK1	84630	broad.mit.edu	37	6	43221047	43221047	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTLL1	25809	broad.mit.edu	37	22	43460246	43460246	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179397726	179397726	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179412988	179412988	+	Missense_Mutation	SNP	A	T	T			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179459084	179459084	+	Nonsense_Mutation	SNP	G	T	T			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179585471	179585471	+	Intron	SNP	G	C	C			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179586544	179586544	+	Intron	SNP	C	A	A			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TUBGCP5	114791	broad.mit.edu	37	15	22853906	22853906	+	Intron	SNP	A	C	C			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TUB	7275	broad.mit.edu	37	11	8118969	8118969	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBA7	7318	broad.mit.edu	37	3	49850834	49850834	+	Intron	SNP	G	A	A			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UGT2B4	7363	broad.mit.edu	37	4	70361472	70361472	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ULK3	25989	broad.mit.edu	37	15	75134424	75134424	+	Missense_Mutation	SNP	T	A	A			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UNC13C	440279	broad.mit.edu	37	15	54707284	54707284	+	Intron	SNP	A	G	G			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UPF3B	65109	broad.mit.edu	37	X	118975155	118975155	+	Nonsense_Mutation	SNP	C	A	A			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UROC1	131669	broad.mit.edu	37	3	126236333	126236333	+	Intron	SNP	C	G	G			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USH2A	7399	broad.mit.edu	37	1	216019167	216019167	+	Silent	SNP	C	A	A			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP31	57478	broad.mit.edu	37	16	23080502	23080502	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP46	64854	broad.mit.edu	37	4	53468216	53468216	+	Missense_Mutation	SNP	T	A	A			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP47	55031	broad.mit.edu	37	11	11976835	11976835	+	Intron	SNP	G	T	T			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP6	9098	broad.mit.edu	37	17	5033581	5033581	+	Intron	SNP	C	G	G	rs146852001	by1000genomes	TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP9X	8239	broad.mit.edu	37	X	41012324	41012324	+	Silent	SNP	A	G	G			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UTP15	84135	broad.mit.edu	37	5	72863231	72863231	+	Missense_Mutation	SNP	A	T	T			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	35986318	35986318	+	IGR	SNP	C	A	A			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	42746478	42746478	+	IGR	SNP	G	T	T			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	5346757	5346757	+	IGR	SNP	G	T	T			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	98510236	98510236	+	IGR	SNP	C	T	T			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	123908764	123908764	+	IGR	SNP	C	A	A			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	27910431	27910431	+	IGR	SNP	G	T	T			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	10659326	10659326	+	IGR	SNP	G	T	T			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	51151074	51151074	+	IGR	SNP	G	T	T	rs79163236		TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	21535912	21535912	+	IGR	SNP	C	A	A			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	31932271	31932271	+	IGR	SNP	G	C	C			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	80237506	80237506	+	IGR	SNP	C	G	G			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	32178975	32178975	+	IGR	SNP	G	T	T			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	32619004	32619004	+	IGR	SNP	A	G	G			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	32915195	32915195	+	IGR	SNP	G	A	A			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	33404764	33404764	+	IGR	SNP	C	A	A			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	33504637	33504637	+	IGR	SNP	G	T	T			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	75536430	75536430	+	IGR	SNP	C	T	T	rs1627915	by1000genomes	TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	75742894	75742894	+	IGR	SNP	A	T	T			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	15687147	15687147	+	IGR	SNP	T	C	C			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	20678962	20678963	+	IGR	DNP	CC	AA	AA			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	10636863	10636863	+	IGR	SNP	A	T	T			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	14208219	14208219	+	IGR	SNP	G	T	T			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	14475529	14475529	+	IGR	SNP	C	A	A			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	14632424	14632424	+	IGR	SNP	A	C	C			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	14632426	14632426	+	IGR	SNP	A	T	T			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	60110259	60110259	+	IGR	SNP	G	T	T			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	16103785	16103785	+	IGR	SNP	A	G	G			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	21416496	21416496	+	IGR	SNP	A	T	T			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	22321416	22321416	+	IGR	SNP	C	A	A			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	22790682	22790682	+	IGR	SNP	G	C	C			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	51714300	51714300	+	IGR	SNP	C	A	A			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	119157489	119157489	+	IGR	SNP	C	A	A			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	149045901	149045901	+	IGR	SNP	A	T	T			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	149095341	149095341	+	IGR	SNP	G	T	T			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	30196438	30196438	+	IGR	SNP	C	T	T			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	50871270	50871270	+	IGR	SNP	C	A	A			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	87250767	87250767	+	IGR	SNP	A	G	G			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	96913536	96913536	+	IGR	SNP	G	T	T			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	10899120	10899120	+	IGR	SNP	C	A	A			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	24475018	24475018	+	IGR	SNP	C	A	A			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	22	16414051	16414051	+	IGR	SNP	C	G	G			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	22	48409051	48409051	+	IGR	SNP	G	C	C			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	107314535	107314535	+	IGR	SNP	G	T	T			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	109329258	109329258	+	IGR	SNP	G	T	T			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	127315447	127315447	+	IGR	SNP	G	C	C			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	128006301	128006301	+	IGR	SNP	C	A	A			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	176190346	176190346	+	IGR	SNP	C	T	T			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	187867391	187867391	+	IGR	SNP	G	A	A			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	85542521	85542521	+	IGR	SNP	G	T	T			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	91801024	91801024	+	IGR	SNP	G	T	T			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	145402531	145402531	+	IGR	SNP	G	T	T			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	26057472	26057472	+	IGR	SNP	T	C	C			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	32676762	32676762	+	IGR	SNP	T	A	A			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	6814784	6814784	+	IGR	SNP	G	A	A			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	94225797	94225797	+	IGR	SNP	G	T	T			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	113659845	113659845	+	IGR	SNP	C	G	G			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	165577564	165577564	+	IGR	SNP	G	C	C			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	165934043	165934043	+	IGR	SNP	A	C	C			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	189659842	189659842	+	IGR	SNP	C	A	A			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	57461336	57461336	+	IGR	SNP	C	A	A			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	63683857	63683857	+	IGR	SNP	C	A	A			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	9565094	9565094	+	IGR	SNP	G	T	T			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	172402997	172402997	+	IGR	SNP	G	T	T			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	174060305	174060305	+	IGR	SNP	G	T	T			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	25910988	25910988	+	IGR	SNP	C	A	A			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	29882923	29882923	+	IGR	SNP	C	A	A			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	39719466	39719466	+	IGR	SNP	C	A	A			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	27236789	27236789	+	IGR	SNP	G	T	T			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	85996478	85996478	+	IGR	SNP	C	G	G			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	97096811	97096811	+	IGR	SNP	C	A	A			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	152144249	152144249	+	IGR	SNP	A	G	G			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	53931119	53931119	+	IGR	SNP	T	A	A			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	55779159	55779159	+	IGR	SNP	G	T	T			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	56665397	56665397	+	IGR	SNP	G	C	C			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	57216378	57216378	+	IGR	SNP	G	T	T			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	62520420	62520420	+	IGR	SNP	C	A	A			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	63538993	63538993	+	IGR	SNP	C	A	A			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	63642710	63642710	+	IGR	SNP	G	T	T			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	65082005	65082005	+	IGR	SNP	A	G	G			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	88801407	88801407	+	IGR	SNP	T	A	A			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	68357655	68357655	+	IGR	SNP	C	A	A			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	71226757	71226757	+	IGR	SNP	T	C	C			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	100166057	100166057	+	IGR	SNP	T	A	A			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	106846206	106846206	+	IGR	SNP	C	A	A			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	110731409	110731409	+	IGR	SNP	C	A	A			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	110863281	110863281	+	IGR	SNP	C	A	A			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	126526099	126526099	+	IGR	SNP	G	T	T			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	133406662	133406662	+	IGR	SNP	G	T	T			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	139115635	139115635	+	IGR	SNP	G	T	T			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	47663387	47663387	+	IGR	SNP	G	A	A			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	52591141	52591141	+	IGR	SNP	G	T	T			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	52640329	52640330	+	IGR	DNP	GG	CT	CT			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	52857075	52857075	+	IGR	SNP	C	G	G			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	65176666	65176666	+	IGR	SNP	G	A	A			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	90677377	90677377	+	IGR	SNP	C	A	A			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	92542949	92542950	+	IGR	DNP	GG	TT	TT			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VAV3	10451	broad.mit.edu	37	1	108507486	108507486	+	Silent	SNP	C	T	T			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VPS25	84313	broad.mit.edu	37	17	40926774	40926774	+	Intron	SNP	C	A	A			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VWC2L	402117	broad.mit.edu	37	2	215279062	215279062	+	Silent	SNP	C	A	A			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WARS2	10352	broad.mit.edu	37	1	119576771	119576771	+	Missense_Mutation	SNP	T	A	A			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR36	134430	broad.mit.edu	37	5	110456857	110456857	+	Intron	SNP	T	G	G			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR6	11180	broad.mit.edu	37	3	49052329	49052329	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR78	79819	broad.mit.edu	37	1	67340425	67340425	+	Intron	SNP	G	C	C			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDTC1	23038	broad.mit.edu	37	1	27627736	27627736	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XAB2	56949	broad.mit.edu	37	19	7684528	7684528	+	Silent	SNP	G	T	T			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XIRP2	129446	broad.mit.edu	37	2	168102744	168102744	+	Silent	SNP	C	A	A			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZAK	51776	broad.mit.edu	37	2	174052169	174052169	+	Intron	SNP	A	C	C			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZBTB46	140685	broad.mit.edu	37	20	62421767	62421767	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZCCHC16	340595	broad.mit.edu	37	X	111698312	111698312	+	Missense_Mutation	SNP	G	C	C	rs149089921		TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZCCHC2	54877	broad.mit.edu	37	18	60243765	60243765	+	Missense_Mutation	SNP	G	C	C			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZCCHC5	203430	broad.mit.edu	37	X	77913592	77913592	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZCWPW1	55063	broad.mit.edu	37	7	100014867	100014868	+	Intron	DNP	CC	AA	AA			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZFHX4	79776	broad.mit.edu	37	8	77764254	77764254	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZFP57	346171	broad.mit.edu	37	6	29640787	29640787	+	Silent	SNP	C	T	T			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZIC4	84107	broad.mit.edu	37	3	147120393	147120393	+	Intron	SNP	C	A	A			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZMAT1	84460	broad.mit.edu	37	X	101166804	101166804	+	Intron	SNP	C	T	T			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF221	7638	broad.mit.edu	37	19	44471333	44471333	+	Missense_Mutation	SNP	G	T	T	rs147168648	byFrequency;by1000genomes	TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF295	49854	broad.mit.edu	37	21	43414063	43414063	+	Missense_Mutation	SNP	A	C	C			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF323	64288	broad.mit.edu	37	6	28294239	28294239	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF484	83744	broad.mit.edu	37	9	95637296	95637296	+	Splice_Site	SNP	C	A	A			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF492	57615	broad.mit.edu	37	19	22847799	22847799	+	Missense_Mutation	SNP	A	G	G			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF555	148254	broad.mit.edu	37	19	2850498	2850498	+	Intron	SNP	C	G	G			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF595	152687	broad.mit.edu	37	4	60022	60022	+	Missense_Mutation	SNP	C	G	G			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF597	146434	broad.mit.edu	37	16	3490906	3490906	+	Missense_Mutation	SNP	C	G	G			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF674	641339	broad.mit.edu	37	X	46387869	46387869	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF702P	79986	broad.mit.edu	37	19	53473734	53473734	+	RNA	SNP	G	C	C			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF716	441234	broad.mit.edu	37	7	57529005	57529005	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF80	7634	broad.mit.edu	37	3	113955452	113955452	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF813	126017	broad.mit.edu	37	19	53994225	53994225	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF81	347344	broad.mit.edu	37	X	47774732	47774732	+	Missense_Mutation	SNP	G	C	C			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF831	128611	broad.mit.edu	37	20	57766620	57766620	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	80771682	80771682	+	Missense_Mutation	SNP	A	G	G			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	22671273	22671273	+	Intron	SNP	C	A	A			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	90838935	90838935	+	5'Flank	SNP	G	T	T			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	93974392	93974392	+	Intron	SNP	G	A	A			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	62962	62962	+	Intron	SNP	C	G	G			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	148882239	148882239	+	Intron	SNP	C	T	T			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	89417196	89417196	+	Intron	SNP	A	C	C			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	33969895	33969895	+	Intron	SNP	C	A	A			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	69313329	69313329	+	Intron	SNP	T	C	C			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	142498843	142498843	+	RNA	SNP	C	G	G			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	48158740	48158740	+	Intron	SNP	A	T	T			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
