Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer
A2BP1	54715	broad.mit.edu	37	16	6656488	6656488	+	Intron	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
A2BP1	54715	broad.mit.edu	37	16	6761569	6761569	+	Intron	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
A2BP1	54715	broad.mit.edu	37	16	6940692	6940692	+	Intron	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
A2BP1	54715	broad.mit.edu	37	16	6947865	6947865	+	Intron	SNP	C	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
A2BP1	54715	broad.mit.edu	37	16	7016005	7016005	+	Intron	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
A2BP1	54715	broad.mit.edu	37	16	7419151	7419151	+	Intron	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
A2BP1	54715	broad.mit.edu	37	16	7441486	7441486	+	Intron	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
A2BP1	54715	broad.mit.edu	37	16	7477030	7477030	+	Intron	SNP	C	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
A2BP1	54715	broad.mit.edu	37	16	7477050	7477050	+	Intron	SNP	G	T	T	rs150994209	by1000genomes	TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
A2BP1	54715	broad.mit.edu	37	16	7507946	7507946	+	Intron	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCA11P	79963	broad.mit.edu	37	4	421393	421395	+	Intron	DEL	TCA	-	-			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCC12	94160	broad.mit.edu	37	16	48135383	48135383	+	Intron	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCC1	4363	broad.mit.edu	37	16	16173268	16173268	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABI3BP	25890	broad.mit.edu	37	3	100647946	100647946	+	Intron	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACADSB	36	broad.mit.edu	37	10	124797418	124797418	+	Intron	SNP	T	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACCN1	40	broad.mit.edu	37	17	31434959	31434959	+	Intron	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACCN1	40	broad.mit.edu	37	17	31815745	31815745	+	Intron	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACCN1	40	broad.mit.edu	37	17	31983865	31983865	+	Intron	SNP	A	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACCN1	40	broad.mit.edu	37	17	32092000	32092000	+	Intron	SNP	A	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACLY	47	broad.mit.edu	37	17	40027872	40027872	+	Intron	SNP	T	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACLY	47	broad.mit.edu	37	17	40037983	40037983	+	Intron	SNP	G	C	C	rs111955821		TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACSL6	23305	broad.mit.edu	37	5	131323979	131323979	+	Intron	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACSM2B	348158	broad.mit.edu	37	16	20559550	20559550	+	Intron	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACTL8	81569	broad.mit.edu	37	1	18108508	18108508	+	Intron	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACTR3C	653857	broad.mit.edu	37	7	149949494	149949494	+	Intron	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM10	102	broad.mit.edu	37	15	58902605	58902605	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM15	8751	broad.mit.edu	37	1	155033231	155033231	+	Intron	SNP	A	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM29	11086	broad.mit.edu	37	4	175897362	175897362	+	Frame_Shift_Del	DEL	T	-	-			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM30	11085	broad.mit.edu	37	1	120440200	120440200	+	5'Flank	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM6	8755	broad.mit.edu	37	14	106926180	106926180	+	Intron	SNP	C	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM7	8756	broad.mit.edu	37	8	24364913	24364913	+	Intron	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS10	81794	broad.mit.edu	37	19	8654779	8654779	+	Silent	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS12	81792	broad.mit.edu	37	5	33557616	33557616	+	Intron	SNP	G	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS12	81792	broad.mit.edu	37	5	33654979	33654979	+	Intron	SNP	T	G	G	rs148735809	by1000genomes	TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS12	81792	broad.mit.edu	37	5	33780980	33780980	+	Intron	SNP	C	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS16	170690	broad.mit.edu	37	5	5318483	5318483	+	Intron	SNP	G	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS19	171019	broad.mit.edu	37	5	129030720	129030720	+	Intron	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS2	9509	broad.mit.edu	37	5	178699950	178699950	+	Missense_Mutation	SNP	G	T	T	rs149308698		TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTSL2	9719	broad.mit.edu	37	9	136411975	136411975	+	Intron	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTSL4	54507	broad.mit.edu	37	1	150531856	150531856	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADARB2	105	broad.mit.edu	37	10	1566802	1566803	+	Intron	DNP	GG	TT	TT			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADCY1	107	broad.mit.edu	37	7	45743309	45743309	+	Silent	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADCY2	108	broad.mit.edu	37	5	7745425	7745425	+	Intron	SNP	T	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADCY2	108	broad.mit.edu	37	5	7789700	7789700	+	Intron	SNP	C	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADCY7	113	broad.mit.edu	37	16	50343538	50343538	+	Frame_Shift_Del	DEL	C	-	-			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADRA1B	147	broad.mit.edu	37	5	159344583	159344583	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADRA1B	147	broad.mit.edu	37	5	159350366	159350366	+	Intron	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AFF1	4299	broad.mit.edu	37	4	87956517	87956517	+	Intron	SNP	T	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AFF1	4299	broad.mit.edu	37	4	88029317	88029317	+	Silent	SNP	A	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AGBL1	123624	broad.mit.edu	37	15	86922418	86922418	+	Intron	SNP	A	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AGBL1	123624	broad.mit.edu	37	15	87565043	87565043	+	Intron	SNP	G	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AGBL4	84871	broad.mit.edu	37	1	49409776	49409776	+	Intron	SNP	T	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AHCTF1	25909	broad.mit.edu	37	1	247031132	247031132	+	Intron	DEL	T	-	-			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AJAP1	55966	broad.mit.edu	37	1	4812650	4812650	+	Intron	SNP	G	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AK5	26289	broad.mit.edu	37	1	78001542	78001542	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AKAP6	9472	broad.mit.edu	37	14	33147384	33147384	+	Intron	SNP	A	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALK	238	broad.mit.edu	37	2	29419880	29419880	+	Intron	SNP	A	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALK	238	broad.mit.edu	37	2	29575294	29575294	+	Intron	SNP	G	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALK	238	broad.mit.edu	37	2	30064751	30064751	+	Intron	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALS2CR12	130540	broad.mit.edu	37	2	202208754	202208754	+	Intron	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AMBN	258	broad.mit.edu	37	4	71469728	71469728	+	Intron	SNP	T	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANK1	286	broad.mit.edu	37	8	41554090	41554090	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANK1	286	broad.mit.edu	37	8	41577349	41577349	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKRD12	23253	broad.mit.edu	37	18	9258957	9258957	+	Intron	SNP	C	A	A	rs118119355	by1000genomes	TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKRD12	23253	broad.mit.edu	37	18	9275400	9275400	+	Intron	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKRD17	26057	broad.mit.edu	37	4	73958111	73958111	+	Intron	SNP	A	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKRD26P1	124149	broad.mit.edu	37	16	46598176	46598176	+	5'UTR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKRD30B	374860	broad.mit.edu	37	18	14825135	14825135	+	Intron	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKS1B	56899	broad.mit.edu	37	12	100060779	100060779	+	Intron	SNP	T	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKS1B	56899	broad.mit.edu	37	12	99308362	99308362	+	Intron	SNP	G	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKS1B	56899	broad.mit.edu	37	12	99834690	99834690	+	Intron	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANO1	55107	broad.mit.edu	37	11	70028779	70028779	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANO2	57101	broad.mit.edu	37	12	5715408	5715408	+	Intron	DEL	G	-	-			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANO2	57101	broad.mit.edu	37	12	5721839	5721839	+	Silent	SNP	G	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANO2	57101	broad.mit.edu	37	12	5748390	5748390	+	Intron	SNP	A	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANO4	121601	broad.mit.edu	37	12	101259707	101259707	+	Intron	SNP	G	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANO4	121601	broad.mit.edu	37	12	101400946	101400946	+	Intron	SNP	C	T	T	rs145377217	by1000genomes	TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANO4	121601	broad.mit.edu	37	12	101470960	101470960	+	Intron	SNP	A	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANO4	121601	broad.mit.edu	37	12	101504153	101504153	+	Intron	SNP	T	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANO7	50636	broad.mit.edu	37	2	242135132	242135132	+	Missense_Mutation	SNP	G	T	T	rs149691575		TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANTXR2	118429	broad.mit.edu	37	4	80828115	80828115	+	3'UTR	SNP	G	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANXA5	308	broad.mit.edu	37	4	122589716	122589716	+	Intron	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AOAH	313	broad.mit.edu	37	7	36626017	36626017	+	Intron	SNP	C	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AP3B2	8120	broad.mit.edu	37	15	83360410	83360410	+	Intron	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
APBB2	323	broad.mit.edu	37	4	40820881	40820881	+	Intron	SNP	T	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
APC	324	broad.mit.edu	37	5	112060405	112060405	+	Intron	SNP	A	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
APLP1	333	broad.mit.edu	37	19	36369327	36369327	+	Intron	SNP	A	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
APOB	338	broad.mit.edu	37	2	21225226	21225226	+	Silent	SNP	A	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
APOB	338	broad.mit.edu	37	2	21234284	21234284	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
APOB	338	broad.mit.edu	37	2	21250944	21250944	+	Intron	SNP	A	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
APOC3	345	broad.mit.edu	37	11	116701354	116701354	+	Splice_Site	SNP	G	A	A	rs138326449	byFrequency	TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
APPL1	26060	broad.mit.edu	37	3	57294181	57294181	+	Silent	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AQPEP	206338	broad.mit.edu	37	5	115309817	115309817	+	Intron	SNP	T	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARAP2	116984	broad.mit.edu	37	4	36084025	36084025	+	Intron	SNP	A	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARGFX	503582	broad.mit.edu	37	3	121305147	121305147	+	Silent	SNP	G	T	T	rs145252171		TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGAP25	9938	broad.mit.edu	37	2	69033507	69033507	+	Intron	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGAP26	23092	broad.mit.edu	37	5	142470429	142470429	+	Intron	SNP	C	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGAP28	79822	broad.mit.edu	37	18	6851989	6851989	+	Intron	SNP	A	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARID1A	8289	broad.mit.edu	37	1	27100613	27100613	+	Intron	SNP	T	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARMCX1	51309	broad.mit.edu	37	X	100807996	100807997	+	Frame_Shift_Ins	INS	-	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARPP21	10777	broad.mit.edu	37	3	35751310	35751310	+	Intron	SNP	C	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARSI	340075	broad.mit.edu	37	5	149677693	149677693	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ART3	419	broad.mit.edu	37	4	77021396	77021396	+	Intron	SNP	T	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASAP1	50807	broad.mit.edu	37	8	131087183	131087183	+	Intron	SNP	C	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASPHD1	253982	broad.mit.edu	37	16	29916211	29916211	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASPM	259266	broad.mit.edu	37	1	197053895	197053895	+	Intron	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASTN1	460	broad.mit.edu	37	1	176845459	176845459	+	Intron	SNP	G	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASTN2	23245	broad.mit.edu	37	9	119370212	119370212	+	Intron	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASTN2	23245	broad.mit.edu	37	9	119498709	119498709	+	Intron	SNP	T	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASTN2	23245	broad.mit.edu	37	9	119582938	119582938	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASTN2	23245	broad.mit.edu	37	9	119695574	119695574	+	Intron	SNP	C	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASTN2	23245	broad.mit.edu	37	9	119995266	119995266	+	Intron	SNP	G	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASTN2	23245	broad.mit.edu	37	9	120159797	120159797	+	Intron	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATAD2	29028	broad.mit.edu	37	8	124364426	124364426	+	Intron	SNP	C	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATG2B	55102	broad.mit.edu	37	14	96795797	96795797	+	Intron	SNP	A	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATM	472	broad.mit.edu	37	11	108143552	108143552	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP10D	57205	broad.mit.edu	37	4	47517775	47517775	+	Intron	SNP	A	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP1B1	481	broad.mit.edu	37	1	169094246	169094246	+	RNA	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP2B2	491	broad.mit.edu	37	3	10413446	10413446	+	Intron	SNP	C	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP2B2	491	broad.mit.edu	37	3	10694850	10694850	+	Intron	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP2B2	491	broad.mit.edu	37	3	10722644	10722644	+	Intron	SNP	C	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP2C1	27032	broad.mit.edu	37	3	130648810	130648810	+	Intron	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP6V1F	9296	broad.mit.edu	37	7	128505565	128505565	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP8B2	57198	broad.mit.edu	37	1	154315240	154315240	+	Intron	SNP	G	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATRN	8455	broad.mit.edu	37	20	3605950	3605950	+	Intron	SNP	A	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATR	545	broad.mit.edu	37	3	142218312	142218312	+	Intron	SNP	A	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AXIN2	8313	broad.mit.edu	37	17	63526066	63526066	+	3'UTR	SNP	A	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BAGE2	85319	broad.mit.edu	37	21	11039311	11039311	+	3'UTR	SNP	T	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BAGE2	85319	broad.mit.edu	37	21	11065634	11065634	+	Intron	SNP	T	G	G	rs12162573		TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BAI3	577	broad.mit.edu	37	6	70071473	70071473	+	Intron	SNP	T	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BARD1	580	broad.mit.edu	37	2	215593793	215593793	+	Intron	SNP	T	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BAZ1B	9031	broad.mit.edu	37	7	72891240	72891240	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BAZ2B	29994	broad.mit.edu	37	2	160319575	160319575	+	Intron	SNP	C	A	A	rs76497799	byFrequency;by1000genomes	TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BBS2	583	broad.mit.edu	37	16	56531479	56531479	+	Intron	SNP	T	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BCL11B	64919	broad.mit.edu	37	14	99682654	99682654	+	Intron	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BCORL1	63035	broad.mit.edu	37	X	129148380	129148380	+	Silent	SNP	C	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BDKRB2	624	broad.mit.edu	37	14	96697934	96697934	+	Intron	SNP	A	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BDNFOS	497258	broad.mit.edu	37	11	27616596	27616596	+	Intron	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BDP1	55814	broad.mit.edu	37	5	70837343	70837343	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BEST2	54831	broad.mit.edu	37	19	12863232	12863232	+	5'Flank	SNP	A	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BEST3	144453	broad.mit.edu	37	12	70065378	70065378	+	Intron	SNP	T	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BEST3	144453	broad.mit.edu	37	12	70078455	70078455	+	Intron	SNP	A	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BIN2	51411	broad.mit.edu	37	12	51693012	51693012	+	Nonsense_Mutation	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BIRC6	57448	broad.mit.edu	37	2	32730165	32730166	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BLMH	642	broad.mit.edu	37	17	28614853	28614853	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BMPER	168667	broad.mit.edu	37	7	34172049	34172049	+	Intron	SNP	T	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BOC	91653	broad.mit.edu	37	3	112944694	112944694	+	Intron	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BOC	91653	broad.mit.edu	37	3	112997244	112997244	+	Intron	SNP	T	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BPIL2	254240	broad.mit.edu	37	22	32829763	32829763	+	Intron	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BRD9	65980	broad.mit.edu	37	5	881275	881275	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BTBD11	121551	broad.mit.edu	37	12	107889142	107889142	+	Intron	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BTBD11	121551	broad.mit.edu	37	12	108042480	108042480	+	Intron	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BTBD16	118663	broad.mit.edu	37	10	124054067	124054068	+	Intron	INS	-	CA	CA	rs144614162	by1000genomes	TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C10orf27	219793	broad.mit.edu	37	10	72543290	72543290	+	Intron	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C10orf76	79591	broad.mit.edu	37	10	103750203	103750203	+	Intron	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C11orf75	56935	broad.mit.edu	37	11	93235150	93235150	+	Intron	SNP	T	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C12orf41	54934	broad.mit.edu	37	12	49054434	49054434	+	Intron	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C12orf76	400073	broad.mit.edu	37	12	110503494	110503494	+	Intron	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C14orf28	122525	broad.mit.edu	37	14	45369750	45369750	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C14orf43	91748	broad.mit.edu	37	14	74216006	74216006	+	Intron	DEL	C	-	-	rs11328827		TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C14orf64	388011	broad.mit.edu	37	14	98401696	98401696	+	Intron	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C14orf64	388011	broad.mit.edu	37	14	98420819	98420819	+	Intron	SNP	G	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C15orf2	23742	broad.mit.edu	37	15	24922227	24922227	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C15orf33	196951	broad.mit.edu	37	15	49707285	49707285	+	Intron	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C15orf33	196951	broad.mit.edu	37	15	49889065	49889065	+	Intron	SNP	G	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C15orf55	256646	broad.mit.edu	37	15	34648891	34648891	+	Silent	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C17orf74	201243	broad.mit.edu	37	17	7330299	7330299	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C17orf77	146723	broad.mit.edu	37	17	72588122	72588122	+	Splice_Site	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C17orf87	388325	broad.mit.edu	37	17	5133043	5133043	+	Intron	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C19orf2	8725	broad.mit.edu	37	19	30496725	30496725	+	Intron	SNP	A	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C19orf50	79036	broad.mit.edu	37	19	18679134	18679134	+	Intron	SNP	G	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1QTNF1	114897	broad.mit.edu	37	17	77042826	77042826	+	Intron	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf112	55732	broad.mit.edu	37	1	169772496	169772496	+	Intron	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf226	400793	broad.mit.edu	37	1	162352897	162352897	+	Intron	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C20orf103	24141	broad.mit.edu	37	20	9510178	9510178	+	Intron	SNP	C	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C20orf103	24141	broad.mit.edu	37	20	9510592	9510592	+	3'UTR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C3orf32	51066	broad.mit.edu	37	3	8770721	8770721	+	Intron	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C3orf67	200844	broad.mit.edu	37	3	58792284	58792284	+	Intron	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C4orf12	404201	broad.mit.edu	37	4	85906278	85906278	+	Intron	SNP	G	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C4orf12	404201	broad.mit.edu	37	4	85909033	85909033	+	Intron	SNP	T	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C4orf19	55286	broad.mit.edu	37	4	37502164	37502164	+	Intron	SNP	G	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C4orf21	55345	broad.mit.edu	37	4	113510861	113510861	+	Intron	SNP	G	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C4orf37	285555	broad.mit.edu	37	4	98737856	98737856	+	Intron	SNP	C	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C6orf142	90523	broad.mit.edu	37	6	53989530	53989530	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C6orf170	221322	broad.mit.edu	37	6	121434319	121434319	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C6orf204	387119	broad.mit.edu	37	6	118879941	118879941	+	Intron	SNP	T	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C6orf72	116254	broad.mit.edu	37	6	149901269	149901269	+	Intron	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C7orf10	79783	broad.mit.edu	37	7	40504879	40504879	+	Intron	SNP	C	T	T	rs146528218	by1000genomes	TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C7orf10	79783	broad.mit.edu	37	7	40616762	40616762	+	Intron	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C7orf10	79783	broad.mit.edu	37	7	40858288	40858288	+	Intron	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C7orf58	79974	broad.mit.edu	37	7	120813341	120813341	+	Intron	SNP	G	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C8orf46	254778	broad.mit.edu	37	8	67422390	67422390	+	Silent	SNP	C	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CA10	56934	broad.mit.edu	37	17	49850825	49850826	+	Intron	DNP	CC	AA	AA			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CABIN1	23523	broad.mit.edu	37	22	24509555	24509555	+	Silent	SNP	C	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1B	774	broad.mit.edu	37	9	140873143	140873143	+	Intron	SNP	G	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1C	775	broad.mit.edu	37	12	2165425	2165426	+	Intron	DNP	GG	TT	TT			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1C	775	broad.mit.edu	37	12	2662803	2662803	+	Intron	SNP	G	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1C	775	broad.mit.edu	37	12	2665001	2665001	+	Intron	SNP	T	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1C	775	broad.mit.edu	37	12	2665032	2665032	+	Intron	SNP	T	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1C	775	broad.mit.edu	37	12	2724872	2724872	+	Intron	SNP	C	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1E	777	broad.mit.edu	37	1	181670125	181670125	+	Intron	SNP	A	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1E	777	broad.mit.edu	37	1	181707583	181707583	+	Intron	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1E	777	broad.mit.edu	37	1	181708130	181708130	+	Intron	SNP	G	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1S	779	broad.mit.edu	37	1	201054058	201054058	+	Intron	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA2D1	781	broad.mit.edu	37	7	81898452	81898452	+	Intron	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA2D3	55799	broad.mit.edu	37	3	54458669	54458669	+	Intron	SNP	C	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA2D3	55799	broad.mit.edu	37	3	54810601	54810601	+	Intron	SNP	C	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA2D3	55799	broad.mit.edu	37	3	54914975	54914975	+	Intron	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA2D4	93589	broad.mit.edu	37	12	1909441	1909441	+	Intron	SNP	C	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNB2	783	broad.mit.edu	37	10	18751331	18751331	+	Intron	SNP	C	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CADM2	253559	broad.mit.edu	37	3	86061744	86061744	+	Intron	SNP	C	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CADPS	8618	broad.mit.edu	37	3	62449288	62449288	+	Intron	SNP	G	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CALD1	800	broad.mit.edu	37	7	134527801	134527801	+	Intron	SNP	G	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CAMK4	814	broad.mit.edu	37	5	110571727	110571727	+	Intron	SNP	T	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CAMK4	814	broad.mit.edu	37	5	110711112	110711112	+	Intron	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CAPN11	11131	broad.mit.edu	37	6	44147977	44147977	+	Intron	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CARD8	22900	broad.mit.edu	37	19	48733993	48733993	+	Intron	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CASQ2	845	broad.mit.edu	37	1	116260236	116260236	+	Intron	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CASR	846	broad.mit.edu	37	3	121916204	121916204	+	Intron	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CASR	846	broad.mit.edu	37	3	121928070	121928070	+	Intron	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CBFA2T2	9139	broad.mit.edu	37	20	32194715	32194715	+	Intron	SNP	G	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC102B	79839	broad.mit.edu	37	18	66480665	66480665	+	Intron	SNP	A	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC132	55610	broad.mit.edu	37	7	92952939	92952939	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC132	55610	broad.mit.edu	37	7	92978026	92978026	+	Silent	SNP	A	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC141	285025	broad.mit.edu	37	2	179748647	179748647	+	Intron	SNP	T	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC149	91050	broad.mit.edu	37	4	24821148	24821148	+	Intron	SNP	G	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC3	83643	broad.mit.edu	37	10	13104266	13104266	+	Intron	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC74B	91409	broad.mit.edu	37	2	130898725	130898725	+	Intron	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC85A	114800	broad.mit.edu	37	2	56496520	56496520	+	Intron	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC91	55297	broad.mit.edu	37	12	28461285	28461285	+	Intron	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC91	55297	broad.mit.edu	37	12	28473937	28473937	+	Intron	SNP	C	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC91	55297	broad.mit.edu	37	12	28549321	28549321	+	Intron	SNP	A	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC93	54520	broad.mit.edu	37	2	118696482	118696482	+	Intron	SNP	T	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCNL1	57018	broad.mit.edu	37	3	156877009	156877009	+	Intron	SNP	G	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD1B	910	broad.mit.edu	37	1	158300375	158300375	+	Intron	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD200R1	131450	broad.mit.edu	37	3	112653642	112653642	+	Intron	SNP	A	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD207	50489	broad.mit.edu	37	2	71058894	71058894	+	Silent	SNP	T	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD207	50489	broad.mit.edu	37	2	71062642	71062642	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD226	10666	broad.mit.edu	37	18	67533437	67533437	+	Intron	SNP	A	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD226	10666	broad.mit.edu	37	18	67588247	67588247	+	Intron	SNP	G	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD36	948	broad.mit.edu	37	7	80295773	80295773	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDC42BPB	9578	broad.mit.edu	37	14	103474195	103474195	+	Intron	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDCA7	83879	broad.mit.edu	37	2	174230312	174230312	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH11	1009	broad.mit.edu	37	16	65026938	65026938	+	Splice_Site	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH12	1010	broad.mit.edu	37	5	22829790	22829790	+	Intron	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH12	1010	broad.mit.edu	37	5	22833640	22833640	+	Intron	SNP	T	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH13	1012	broad.mit.edu	37	16	82759732	82759732	+	Intron	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH13	1012	broad.mit.edu	37	16	83324469	83324469	+	Intron	SNP	T	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH18	1016	broad.mit.edu	37	5	19473541	19473541	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH18	1016	broad.mit.edu	37	5	19565891	19565891	+	Intron	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH18	1016	broad.mit.edu	37	5	19612766	19612766	+	Intron	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH18	1016	broad.mit.edu	37	5	19980160	19980160	+	Intron	SNP	G	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH1	999	broad.mit.edu	37	16	68776487	68776487	+	Intron	SNP	C	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH20	28316	broad.mit.edu	37	18	59108042	59108042	+	Intron	SNP	G	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH22	64405	broad.mit.edu	37	20	44899297	44899297	+	Intron	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH22	64405	broad.mit.edu	37	20	44926496	44926496	+	Intron	SNP	T	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH4	1002	broad.mit.edu	37	20	59886915	59886915	+	Intron	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH4	1002	broad.mit.edu	37	20	60363463	60363463	+	Intron	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH9	1007	broad.mit.edu	37	5	26902619	26902619	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH9	1007	broad.mit.edu	37	5	26922199	26922199	+	Intron	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDKAL1	54901	broad.mit.edu	37	6	20821947	20821947	+	Intron	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDKL3	51265	broad.mit.edu	37	5	133681167	133681167	+	Intron	SNP	G	A	A	rs139802163	by1000genomes	TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDNF	441549	broad.mit.edu	37	10	14870148	14870148	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CEACAM3	1084	broad.mit.edu	37	19	42314328	42314328	+	Intron	SNP	C	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CECR2	27443	broad.mit.edu	37	22	18021558	18021558	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CELA2B	51032	broad.mit.edu	37	1	15807706	15807706	+	Intron	SNP	T	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CELF4	56853	broad.mit.edu	37	18	34960556	34960556	+	Intron	SNP	T	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CELF4	56853	broad.mit.edu	37	18	35007357	35007357	+	Intron	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CENPF	1063	broad.mit.edu	37	1	214828563	214828563	+	Intron	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CENPP	401541	broad.mit.edu	37	9	95107895	95107895	+	Intron	SNP	G	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CEP120	153241	broad.mit.edu	37	5	122736929	122736929	+	Intron	SNP	T	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CEP152	22995	broad.mit.edu	37	15	49048215	49048215	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CEP192	55125	broad.mit.edu	37	18	13040877	13040877	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CEP290	80184	broad.mit.edu	37	12	88478385	88478385	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHMP2B	25978	broad.mit.edu	37	3	87295012	87295012	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHN2	1124	broad.mit.edu	37	7	29329626	29329626	+	Intron	SNP	T	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHRM2	1129	broad.mit.edu	37	7	136699885	136699885	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHRM3	1131	broad.mit.edu	37	1	239591110	239591110	+	Intron	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHRNA6	8973	broad.mit.edu	37	8	42611340	42611340	+	Silent	SNP	C	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHRNA7	1139	broad.mit.edu	37	15	32332702	32332702	+	Intron	SNP	T	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLIC5	53405	broad.mit.edu	37	6	45905777	45905777	+	Intron	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLK4	57396	broad.mit.edu	37	5	178060460	178060460	+	5'Flank	SNP	G	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLPB	81570	broad.mit.edu	37	11	72144992	72144992	+	Intron	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLPTM1L	81037	broad.mit.edu	37	5	1321654	1321654	+	Intron	DEL	G	-	-			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLRN1	7401	broad.mit.edu	37	3	150670814	150670814	+	Intron	SNP	C	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLSTN2	64084	broad.mit.edu	37	3	139739590	139739590	+	Intron	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLUAP1	23059	broad.mit.edu	37	16	3565309	3565309	+	Intron	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLYBL	171425	broad.mit.edu	37	13	100537371	100537371	+	Intron	SNP	C	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNBD1	168975	broad.mit.edu	37	8	88117908	88117908	+	Intron	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNIH3	149111	broad.mit.edu	37	1	224804788	224804789	+	5'UTR	DNP	GG	TA	TA			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNIH3	149111	broad.mit.edu	37	1	224927219	224927219	+	3'UTR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNKSR2	22866	broad.mit.edu	37	X	21609190	21609190	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTN1	1272	broad.mit.edu	37	12	41195552	41195552	+	Intron	SNP	T	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTN4	152330	broad.mit.edu	37	3	2468183	2468183	+	Intron	SNP	A	T	T	rs116211065	by1000genomes	TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTN4	152330	broad.mit.edu	37	3	2978238	2978238	+	Intron	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTN5	53942	broad.mit.edu	37	11	100061912	100061912	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTN5	53942	broad.mit.edu	37	11	99667493	99667493	+	Intron	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTN5	53942	broad.mit.edu	37	11	99995837	99995837	+	Intron	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTNAP2	26047	broad.mit.edu	37	7	146002747	146002747	+	Intron	SNP	A	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTNAP2	26047	broad.mit.edu	37	7	146712857	146712857	+	Intron	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTNAP2	26047	broad.mit.edu	37	7	146753905	146753905	+	Intron	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTNAP4	85445	broad.mit.edu	37	16	76555966	76555966	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTNAP5	129684	broad.mit.edu	37	2	124791175	124791175	+	Intron	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTNAP5	129684	broad.mit.edu	37	2	124999733	124999733	+	Intron	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL11A1	1301	broad.mit.edu	37	1	103488444	103488444	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL17A1	1308	broad.mit.edu	37	10	105817909	105817909	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL21A1	81578	broad.mit.edu	37	6	55933973	55933973	+	Intron	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL22A1	169044	broad.mit.edu	37	8	139809190	139809190	+	Intron	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL22A1	169044	broad.mit.edu	37	8	139867801	139867801	+	Intron	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL25A1	84570	broad.mit.edu	37	4	110084730	110084730	+	Intron	SNP	A	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL5A3	50509	broad.mit.edu	37	19	10087234	10087235	+	Frame_Shift_Ins	INS	-	A	A	rs146470482	byFrequency	TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL9A1	1297	broad.mit.edu	37	6	70942198	70942198	+	Intron	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COX7B2	170712	broad.mit.edu	37	4	46779433	46779433	+	Intron	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPA3	1359	broad.mit.edu	37	3	148596236	148596236	+	Missense_Mutation	SNP	T	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPD	1362	broad.mit.edu	37	17	28752439	28752439	+	Intron	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPEB1	64506	broad.mit.edu	37	15	83221331	83221331	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPNE4	131034	broad.mit.edu	37	3	131476854	131476854	+	Intron	SNP	C	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPNE8	144402	broad.mit.edu	37	12	39112001	39112001	+	Intron	SNP	G	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPS1	1373	broad.mit.edu	37	2	211513309	211513309	+	Intron	SNP	G	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPXM2	119587	broad.mit.edu	37	10	125593234	125593234	+	Intron	SNP	G	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPXM2	119587	broad.mit.edu	37	10	125601809	125601809	+	Intron	SNP	C	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPXM2	119587	broad.mit.edu	37	10	125692082	125692082	+	Intron	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPXM2	119587	broad.mit.edu	37	10	125692084	125692084	+	Intron	SNP	A	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CRB1	23418	broad.mit.edu	37	1	197396501	197396501	+	Intron	SNP	A	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CRHBP	1393	broad.mit.edu	37	5	76259266	76259266	+	Silent	SNP	C	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CROCCL1	84809	broad.mit.edu	37	1	16948096	16948096	+	Intron	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSDE1	7812	broad.mit.edu	37	1	115280655	115280655	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD1	64478	broad.mit.edu	37	8	2808759	2808759	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD1	64478	broad.mit.edu	37	8	2876020	2876020	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD1	64478	broad.mit.edu	37	8	2886769	2886769	+	Intron	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD1	64478	broad.mit.edu	37	8	3165275	3165275	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD1	64478	broad.mit.edu	37	8	3424006	3424006	+	Intron	SNP	C	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD1	64478	broad.mit.edu	37	8	4368264	4368264	+	Intron	SNP	T	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD2	114784	broad.mit.edu	37	1	34071053	34071053	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD2	114784	broad.mit.edu	37	1	34071436	34071436	+	Intron	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD2	114784	broad.mit.edu	37	1	34377422	34377422	+	Intron	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD3	114788	broad.mit.edu	37	8	113678762	113678762	+	Intron	SNP	C	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD3	114788	broad.mit.edu	37	8	113956186	113956186	+	Intron	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD3	114788	broad.mit.edu	37	8	113987988	113987988	+	Intron	SNP	C	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD3	114788	broad.mit.edu	37	8	114041779	114041779	+	Intron	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSTF3	1479	broad.mit.edu	37	11	33129503	33129503	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTAGE5	4253	broad.mit.edu	37	14	39784961	39784961	+	Intron	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTNNA2	1496	broad.mit.edu	37	2	79610610	79610610	+	Intron	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTNNA2	1496	broad.mit.edu	37	2	79786804	79786804	+	Intron	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTNNA2	1496	broad.mit.edu	37	2	80700010	80700010	+	Intron	SNP	A	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTNND2	1501	broad.mit.edu	37	5	11022947	11022947	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTNND2	1501	broad.mit.edu	37	5	11078009	11078009	+	Intron	SNP	A	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTNND2	1501	broad.mit.edu	37	5	11082684	11082684	+	Intron	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTNND2	1501	broad.mit.edu	37	5	11117550	11117550	+	Intron	SNP	A	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTNND2	1501	broad.mit.edu	37	5	11346664	11346664	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTNND2	1501	broad.mit.edu	37	5	11653728	11653728	+	Intron	SNP	C	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTNND2	1501	broad.mit.edu	37	5	11780300	11780300	+	Intron	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CUX2	23316	broad.mit.edu	37	12	111481888	111481888	+	Intron	SNP	C	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CWF19L2	143884	broad.mit.edu	37	11	107208207	107208207	+	Intron	SNP	T	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CWH43	80157	broad.mit.edu	37	4	49049729	49049729	+	Intron	SNP	A	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CXorf22	170063	broad.mit.edu	37	X	35985708	35985708	+	Intron	SNP	T	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP2F1	1572	broad.mit.edu	37	19	41660642	41660642	+	Intron	SNP	G	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DAAM1	23002	broad.mit.edu	37	14	59682263	59682263	+	Intron	SNP	C	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DAAM2	23500	broad.mit.edu	37	6	39840882	39840882	+	Intron	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DAB1	1600	broad.mit.edu	37	1	57756695	57756695	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DAB1	1600	broad.mit.edu	37	1	58357814	58357814	+	Intron	SNP	A	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DAB2	1601	broad.mit.edu	37	5	39388698	39388698	+	Intron	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DBC1	1620	broad.mit.edu	37	9	121993608	121993608	+	Intron	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCAF7	10238	broad.mit.edu	37	17	61628127	61628127	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCAF8L1	139425	broad.mit.edu	37	X	27998043	27998043	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCC	1630	broad.mit.edu	37	18	50292639	50292639	+	Intron	SNP	G	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCDC1	341019	broad.mit.edu	37	11	31302432	31302432	+	Intron	SNP	A	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCDC1	341019	broad.mit.edu	37	11	31302434	31302434	+	Intron	SNP	G	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCX	1641	broad.mit.edu	37	X	110655070	110655070	+	5'Flank	SNP	C	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DDR2	4921	broad.mit.edu	37	1	162637179	162637179	+	Intron	SNP	A	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DDX59	83479	broad.mit.edu	37	1	200635398	200635398	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DEC1	50514	broad.mit.edu	37	9	118121200	118121200	+	Intron	SNP	T	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DENND2A	27147	broad.mit.edu	37	7	140287451	140287451	+	Splice_Site	SNP	A	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DEPDC6	64798	broad.mit.edu	37	8	120940614	120940614	+	Intron	SNP	A	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DFNA5	1687	broad.mit.edu	37	7	24748122	24748122	+	Intron	SNP	T	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DGKB	1607	broad.mit.edu	37	7	14898446	14898446	+	Intron	SNP	A	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DGKD	8527	broad.mit.edu	37	2	234372225	234372225	+	Intron	SNP	G	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DGKI	9162	broad.mit.edu	37	7	137374668	137374668	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DHRSX	207063	broad.mit.edu	37	X	2300728	2300728	+	Intron	SNP	T	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DIRC2	84925	broad.mit.edu	37	3	122598179	122598179	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DISP2	85455	broad.mit.edu	37	15	40662562	40662562	+	3'UTR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DKK2	27123	broad.mit.edu	37	4	107956817	107956817	+	5'UTR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DKK2	27123	broad.mit.edu	37	4	108169640	108169640	+	Intron	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DLAT	1737	broad.mit.edu	37	11	111921968	111921968	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DLEC1	9940	broad.mit.edu	37	3	38080913	38080913	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DLG2	1740	broad.mit.edu	37	11	83390336	83390336	+	Intron	SNP	G	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DLG2	1740	broad.mit.edu	37	11	84250563	84250563	+	Intron	SNP	T	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DLG2	1740	broad.mit.edu	37	11	84391212	84391212	+	Intron	SNP	A	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DLG3	1741	broad.mit.edu	37	X	69669042	69669042	+	Intron	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DLG3	1741	broad.mit.edu	37	X	69722000	69722000	+	Intron	SNP	C	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DLG4	1742	broad.mit.edu	37	17	7097798	7097798	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DLG5	9231	broad.mit.edu	37	10	79552078	79552078	+	3'UTR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DLG5	9231	broad.mit.edu	37	10	79565530	79565530	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DMD	1756	broad.mit.edu	37	X	31165492	31165492	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DMD	1756	broad.mit.edu	37	X	32862886	32862886	+	Intron	SNP	A	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DMGDH	29958	broad.mit.edu	37	5	78349865	78349865	+	Intron	SNP	C	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH10	196385	broad.mit.edu	37	12	124263353	124263353	+	Intron	SNP	C	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH10	196385	broad.mit.edu	37	12	124265637	124265637	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH2	146754	broad.mit.edu	37	17	7644070	7644070	+	Intron	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH6	1768	broad.mit.edu	37	2	84779972	84779972	+	Intron	SNP	C	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH9	1770	broad.mit.edu	37	17	11572677	11572677	+	Intron	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH9	1770	broad.mit.edu	37	17	11812883	11812883	+	Intron	SNP	G	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAJC12	56521	broad.mit.edu	37	10	69565163	69565163	+	Intron	SNP	C	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNASE2B	58511	broad.mit.edu	37	1	84878197	84878197	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DOCK2	1794	broad.mit.edu	37	5	169122824	169122824	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DOCK2	1794	broad.mit.edu	37	5	169148925	169148925	+	Intron	SNP	A	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DOCK3	1795	broad.mit.edu	37	3	50925859	50925859	+	Intron	SNP	A	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DOCK4	9732	broad.mit.edu	37	7	111398697	111398697	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DOK2	9046	broad.mit.edu	37	8	21738300	21738300	+	Intron	SNP	C	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DPF3	8110	broad.mit.edu	37	14	73274948	73274948	+	Intron	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DPP10	57628	broad.mit.edu	37	2	115200335	115200335	+	5'UTR	SNP	C	T	T	rs140156848	by1000genomes	TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DPP10	57628	broad.mit.edu	37	2	116390681	116390681	+	Intron	SNP	C	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DPP10	57628	broad.mit.edu	37	2	116572433	116572433	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DPP6	1804	broad.mit.edu	37	7	154374723	154374723	+	Intron	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DPP6	1804	broad.mit.edu	37	7	154379486	154379486	+	Intron	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DPY19L1	23333	broad.mit.edu	37	7	35057722	35057722	+	Intron	DEL	T	-	-	rs151162813		TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DPY19L3	147991	broad.mit.edu	37	19	32943958	32943958	+	Intron	SNP	A	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DPYD	1806	broad.mit.edu	37	1	97671758	97671758	+	Intron	SNP	C	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DPYD	1806	broad.mit.edu	37	1	98115830	98115830	+	Intron	SNP	T	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DSC2	1824	broad.mit.edu	37	18	28651535	28651535	+	Intron	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DSC3	1825	broad.mit.edu	37	18	28604434	28604434	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DSCAML1	57453	broad.mit.edu	37	11	117352588	117352588	+	Intron	SNP	C	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DSCAML1	57453	broad.mit.edu	37	11	117550478	117550478	+	Intron	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DSCAML1	57453	broad.mit.edu	37	11	117583435	117583435	+	Intron	SNP	G	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DSG1	1828	broad.mit.edu	37	18	28935382	28935382	+	3'UTR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DTL	51514	broad.mit.edu	37	1	212229242	212229242	+	Intron	SNP	C	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DUOX2	50506	broad.mit.edu	37	15	45393531	45393531	+	Intron	SNP	G	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DUSP22	56940	broad.mit.edu	37	6	350919	350919	+	3'UTR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DYNC1LI2	1783	broad.mit.edu	37	16	66761883	66761883	+	Intron	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DYNC2H1	79659	broad.mit.edu	37	11	103055733	103055734	+	Frame_Shift_Ins	INS	-	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DYSF	8291	broad.mit.edu	37	2	71912342	71912342	+	Intron	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EBF1	1879	broad.mit.edu	37	5	158334222	158334222	+	Intron	SNP	A	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EDIL3	10085	broad.mit.edu	37	5	83288348	83288348	+	Intron	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EGFL6	25975	broad.mit.edu	37	X	13609107	13609107	+	Intron	SNP	T	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EGFLAM	133584	broad.mit.edu	37	5	38464048	38464048	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EIF1AD	84285	broad.mit.edu	37	11	65767113	65767113	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EIF2C1	26523	broad.mit.edu	37	1	36352617	36352617	+	Intron	SNP	G	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EIF3A	8661	broad.mit.edu	37	10	120801390	120801390	+	Intron	SNP	G	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EIF4G1	1981	broad.mit.edu	37	3	184039061	184039061	+	Intron	SNP	A	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EIF4G2	1982	broad.mit.edu	37	11	10825278	10825278	+	Intron	SNP	C	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ELK4	2005	broad.mit.edu	37	1	205595140	205595140	+	Intron	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ELMO1	9844	broad.mit.edu	37	7	36960775	36960775	+	Intron	SNP	G	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ELMO1	9844	broad.mit.edu	37	7	36984303	36984303	+	Intron	SNP	G	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ELMO1	9844	broad.mit.edu	37	7	36995142	36995142	+	Intron	SNP	A	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ELMO1	9844	broad.mit.edu	37	7	37460860	37460860	+	Intron	SNP	T	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ELP4	26610	broad.mit.edu	37	11	31757299	31757299	+	Intron	SNP	A	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ENPEP	2028	broad.mit.edu	37	4	111470770	111470770	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EOMES	8320	broad.mit.edu	37	3	27759021	27759021	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPB41L1	2036	broad.mit.edu	37	20	34788913	34788913	+	Intron	SNP	C	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPB41L3	23136	broad.mit.edu	37	18	5433879	5433879	+	Intron	SNP	A	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPHA10	284656	broad.mit.edu	37	1	38226928	38226928	+	Intron	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPHA5	2044	broad.mit.edu	37	4	66189926	66189926	+	Missense_Mutation	SNP	C	T	T	rs145811811		TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPHA6	285220	broad.mit.edu	37	3	96591410	96591410	+	Intron	SNP	T	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPHA6	285220	broad.mit.edu	37	3	96788175	96788175	+	Intron	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPHA6	285220	broad.mit.edu	37	3	96857823	96857823	+	Intron	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPHA6	285220	broad.mit.edu	37	3	97334109	97334109	+	Intron	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPHB1	2047	broad.mit.edu	37	3	134746772	134746772	+	Intron	SNP	A	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPHB1	2047	broad.mit.edu	37	3	134804251	134804251	+	Intron	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPHB1	2047	broad.mit.edu	37	3	134978135	134978135	+	3'UTR	SNP	T	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPS15	2060	broad.mit.edu	37	1	51871533	51871533	+	Intron	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ERBB4	2066	broad.mit.edu	37	2	212495004	212495004	+	Intron	SNP	C	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ESPL1	9700	broad.mit.edu	37	12	53686208	53686208	+	Intron	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ESRRG	2104	broad.mit.edu	37	1	216944426	216944426	+	Intron	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ETHE1	23474	broad.mit.edu	37	19	44011458	44011458	+	Intron	SNP	T	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ETS1	2113	broad.mit.edu	37	11	128426690	128426690	+	Intron	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EXOC2	55770	broad.mit.edu	37	6	497487	497487	+	Silent	SNP	C	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EXOC4	60412	broad.mit.edu	37	7	133363786	133363786	+	Intron	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EXOC4	60412	broad.mit.edu	37	7	133589100	133589100	+	Intron	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EXOC4	60412	broad.mit.edu	37	7	133676178	133676178	+	Intron	SNP	C	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EXOC6	54536	broad.mit.edu	37	10	94688135	94688135	+	Nonsense_Mutation	SNP	A	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EYA1	2138	broad.mit.edu	37	8	72237743	72237743	+	Intron	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EYS	346007	broad.mit.edu	37	6	66012244	66012244	+	Intron	SNP	G	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EYS	346007	broad.mit.edu	37	6	66104865	66104865	+	Intron	SNP	C	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
F13A1	2162	broad.mit.edu	37	6	6240775	6240776	+	Intron	DNP	CC	AA	AA			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAIM2	23017	broad.mit.edu	37	12	50264506	50264506	+	Intron	SNP	A	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAIM2	23017	broad.mit.edu	37	12	50279504	50279504	+	Intron	SNP	A	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM133A	286499	broad.mit.edu	37	X	92964468	92964468	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM136B	387071	broad.mit.edu	37	6	3045946	3045946	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM153B	202134	broad.mit.edu	37	5	175530844	175530844	+	Intron	SNP	C	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM155A	728215	broad.mit.edu	37	13	108468378	108468378	+	Intron	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM163A	148753	broad.mit.edu	37	1	179730859	179730859	+	Intron	SNP	A	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM163A	148753	broad.mit.edu	37	1	179731555	179731555	+	Intron	SNP	G	T	T	rs141082017	by1000genomes	TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM169B	283777	broad.mit.edu	37	15	99046853	99046853	+	Intron	SNP	T	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM179A	165186	broad.mit.edu	37	2	29222072	29222072	+	Silent	SNP	C	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM188B	84182	broad.mit.edu	37	7	30846900	30846900	+	Intron	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM189A1	23359	broad.mit.edu	37	15	29526166	29526166	+	Intron	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM189A1	23359	broad.mit.edu	37	15	29680829	29680829	+	Intron	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM189A1	23359	broad.mit.edu	37	15	29716864	29716864	+	Intron	SNP	G	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM18B	51030	broad.mit.edu	37	17	18693117	18693117	+	Intron	SNP	A	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM190A	401145	broad.mit.edu	37	4	91329690	91329690	+	Intron	SNP	C	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM19A2	338811	broad.mit.edu	37	12	62183033	62183033	+	Intron	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM38B	63895	broad.mit.edu	37	18	10887367	10887367	+	Intron	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM41C	284593	broad.mit.edu	37	1	809171	809171	+	Intron	SNP	G	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM59A	64762	broad.mit.edu	37	18	29894560	29894560	+	Intron	SNP	T	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM59A	64762	broad.mit.edu	37	18	29937533	29937533	+	Intron	SNP	T	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM5B	57795	broad.mit.edu	37	1	177226597	177226597	+	Intron	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM5C	339479	broad.mit.edu	37	1	190067133	190067133	+	3'UTR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM5C	339479	broad.mit.edu	37	1	190250805	190250805	+	Silent	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM5C	339479	broad.mit.edu	37	1	190336128	190336128	+	Intron	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM66D	100132923	broad.mit.edu	37	8	12421283	12421283	+	Intron	SNP	T	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM75A6	389730	broad.mit.edu	37	9	43628906	43628906	+	Intron	DEL	C	-	-			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM83B	222584	broad.mit.edu	37	6	54742823	54742823	+	Intron	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAR1	84188	broad.mit.edu	37	11	13743206	13743206	+	Intron	SNP	A	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAT3	120114	broad.mit.edu	37	11	92092230	92092230	+	Intron	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBN2	2201	broad.mit.edu	37	5	127597349	127597349	+	Intron	SNP	G	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBN2	2201	broad.mit.edu	37	5	127645716	127645716	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBN2	2201	broad.mit.edu	37	5	127671313	127671313	+	Intron	SNP	T	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBP2	8789	broad.mit.edu	37	9	97333606	97333606	+	Intron	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBXO21	23014	broad.mit.edu	37	12	117593558	117593558	+	Intron	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FCGBP	8857	broad.mit.edu	37	19	40419930	40419930	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FCGR2A	2212	broad.mit.edu	37	1	161480056	161480056	+	Intron	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FER1L6	654463	broad.mit.edu	37	8	124877250	124877250	+	Intron	SNP	T	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FGD5	152273	broad.mit.edu	37	3	14926391	14926391	+	Intron	SNP	C	T	T	rs145779263	by1000genomes	TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FGD6	55785	broad.mit.edu	37	12	95475118	95475118	+	3'UTR	SNP	T	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FGD6	55785	broad.mit.edu	37	12	95566222	95566222	+	Intron	SNP	T	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FGF12	2257	broad.mit.edu	37	3	192113497	192113497	+	Intron	SNP	A	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FGF13	2258	broad.mit.edu	37	X	137977823	137977823	+	Intron	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FGF18	8817	broad.mit.edu	37	5	170872012	170872012	+	Intron	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FHIT	2272	broad.mit.edu	37	3	59891824	59891824	+	Intron	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FIGN	55137	broad.mit.edu	37	2	164466341	164466341	+	Silent	SNP	T	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLJ12825	440101	broad.mit.edu	37	12	54471990	54471990	+	Intron	SNP	G	A	A	rs139724428	by1000genomes	TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLJ25363	401082	broad.mit.edu	37	3	109190766	109190766	+	Intron	SNP	A	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLJ35024	401491	broad.mit.edu	37	9	2499247	2499247	+	Intron	SNP	T	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLJ46321	389763	broad.mit.edu	37	9	84607070	84607070	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLNB	2317	broad.mit.edu	37	3	58087887	58087887	+	Intron	SNP	T	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLRT2	23768	broad.mit.edu	37	14	86088719	86088719	+	Silent	SNP	A	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLVCR2	55640	broad.mit.edu	37	14	76052686	76052686	+	Intron	SNP	A	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FMN2	56776	broad.mit.edu	37	1	240334552	240334552	+	Intron	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FMN2	56776	broad.mit.edu	37	1	240494070	240494070	+	Intron	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FMO6P	388714	broad.mit.edu	37	1	171121269	171121269	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FOLH1	2346	broad.mit.edu	37	11	49168533	49168533	+	Intron	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FOXL2	668	broad.mit.edu	37	3	138664519	138664519	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FOXN3	1112	broad.mit.edu	37	14	90031150	90031150	+	Intron	SNP	A	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FOXP1	27086	broad.mit.edu	37	3	71161869	71161869	+	Intron	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FOXP2	93986	broad.mit.edu	37	7	113890381	113890381	+	Intron	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FRG1B	284802	broad.mit.edu	37	20	29648633	29648633	+	Intron	SNP	C	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FRMD4A	55691	broad.mit.edu	37	10	14395487	14395487	+	Intron	SNP	T	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FRYL	285527	broad.mit.edu	37	4	48622683	48622683	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FSHR	2492	broad.mit.edu	37	2	49218860	49218860	+	Intron	SNP	C	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FXYD5	53827	broad.mit.edu	37	19	35649125	35649125	+	Intron	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FXYD6	53826	broad.mit.edu	37	11	117725552	117725552	+	Intron	SNP	G	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
G2E3	55632	broad.mit.edu	37	14	31048311	31048311	+	Intron	SNP	C	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABRA5	2558	broad.mit.edu	37	15	27182421	27182421	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABRB3	2562	broad.mit.edu	37	15	27159866	27159866	+	Intron	SNP	T	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABRG1	2565	broad.mit.edu	37	4	46066418	46066418	+	Intron	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABRG3	2567	broad.mit.edu	37	15	27700939	27700939	+	Intron	SNP	T	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GAD2	2572	broad.mit.edu	37	10	26540387	26540387	+	Intron	SNP	T	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GADL1	339896	broad.mit.edu	37	3	30896162	30896162	+	Intron	SNP	G	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GALC	2581	broad.mit.edu	37	14	88319910	88319910	+	Intron	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GALNT14	79623	broad.mit.edu	37	2	31307387	31307387	+	Intron	SNP	T	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GALNTL6	442117	broad.mit.edu	37	4	172940000	172940000	+	Intron	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GALNTL6	442117	broad.mit.edu	37	4	173899666	173899666	+	Intron	SNP	G	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GAS2L3	283431	broad.mit.edu	37	12	100975630	100975630	+	Intron	SNP	T	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GHR	2690	broad.mit.edu	37	5	42428536	42428536	+	Intron	SNP	A	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GHR	2690	broad.mit.edu	37	5	42699873	42699873	+	Intron	SNP	A	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GIMAP8	155038	broad.mit.edu	37	7	150175052	150175052	+	3'UTR	SNP	T	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GIPC2	54810	broad.mit.edu	37	1	78578042	78578042	+	Intron	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLI2	2736	broad.mit.edu	37	2	121730161	121730161	+	Intron	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLIS3	169792	broad.mit.edu	37	9	4074961	4074961	+	Intron	SNP	C	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLYR1	84656	broad.mit.edu	37	16	4867896	4867896	+	Intron	SNP	C	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GOSR2	9570	broad.mit.edu	37	17	45017938	45017938	+	3'UTR	SNP	C	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GOT2	2806	broad.mit.edu	37	16	58753273	58753273	+	Intron	SNP	C	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GP2	2813	broad.mit.edu	37	16	20340560	20340560	+	5'Flank	SNP	T	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPC5	2262	broad.mit.edu	37	13	92444512	92444512	+	Intron	SNP	G	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPIHBP1	338328	broad.mit.edu	37	8	144297260	144297261	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR139	124274	broad.mit.edu	37	16	20043969	20043969	+	Silent	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR139	124274	broad.mit.edu	37	16	20053200	20053200	+	Intron	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR139	124274	broad.mit.edu	37	16	20065934	20065934	+	Intron	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR158	57512	broad.mit.edu	37	10	25736993	25736993	+	Intron	SNP	T	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR158	57512	broad.mit.edu	37	10	25857403	25857403	+	Intron	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR65	8477	broad.mit.edu	37	14	88473704	88473704	+	Intron	SNP	T	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR98	84059	broad.mit.edu	37	5	89953780	89953780	+	Silent	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRAMD1B	57476	broad.mit.edu	37	11	123469874	123469874	+	Intron	SNP	C	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRAP2	9402	broad.mit.edu	37	22	40370858	40370858	+	Intron	SNP	A	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GREB1L	80000	broad.mit.edu	37	18	19021018	19021018	+	Intron	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRIA1	2890	broad.mit.edu	37	5	152961473	152961473	+	Intron	SNP	A	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRIA1	2890	broad.mit.edu	37	5	153028612	153028612	+	Intron	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRIA4	2893	broad.mit.edu	37	11	105725990	105725990	+	Intron	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRID1	2894	broad.mit.edu	37	10	87628808	87628808	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRID1	2894	broad.mit.edu	37	10	87791498	87791498	+	Intron	SNP	C	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRIK2	2898	broad.mit.edu	37	6	102304482	102304482	+	Intron	SNP	T	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRIK2	2898	broad.mit.edu	37	6	102483249	102483249	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRIK3	2899	broad.mit.edu	37	1	37285483	37285483	+	Intron	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRIK4	2900	broad.mit.edu	37	11	120479312	120479312	+	Intron	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRIK4	2900	broad.mit.edu	37	11	120488798	120488798	+	Intron	SNP	G	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRIK4	2900	broad.mit.edu	37	11	120790349	120790349	+	Intron	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRIN2A	2903	broad.mit.edu	37	16	9960970	9960970	+	Intron	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRIN2A	2903	broad.mit.edu	37	16	9966148	9966148	+	Intron	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRIN2B	2904	broad.mit.edu	37	12	14085219	14085219	+	Intron	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRIN2B	2904	broad.mit.edu	37	12	14097347	14097347	+	Intron	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRIN3A	116443	broad.mit.edu	37	9	104459564	104459564	+	Intron	SNP	A	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRIN3A	116443	broad.mit.edu	37	9	104477577	104477577	+	Intron	SNP	C	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRK5	2869	broad.mit.edu	37	10	121085871	121085871	+	Intron	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRM5	2915	broad.mit.edu	37	11	88306496	88306496	+	Intron	SNP	C	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRM7	2917	broad.mit.edu	37	3	6903353	6903353	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRM7	2917	broad.mit.edu	37	3	7436534	7436534	+	Intron	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRM7	2917	broad.mit.edu	37	3	7484947	7484947	+	Intron	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GSG1L	146395	broad.mit.edu	37	16	27871748	27871748	+	Intron	DEL	A	-	-			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GSG1L	146395	broad.mit.edu	37	16	27936921	27936921	+	Intron	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GSG1L	146395	broad.mit.edu	37	16	27972159	27972159	+	Intron	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GTF3C2	2976	broad.mit.edu	37	2	27565996	27565996	+	Nonsense_Mutation	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GUCY2F	2986	broad.mit.edu	37	X	108623770	108623770	+	Intron	SNP	C	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GUCY2F	2986	broad.mit.edu	37	X	108712928	108712928	+	Intron	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GVIN1	387751	broad.mit.edu	37	11	6755222	6755222	+	Intron	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HBE1	3046	broad.mit.edu	37	11	5338104	5338104	+	Intron	SNP	G	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HCN1	348980	broad.mit.edu	37	5	45498434	45498434	+	Intron	SNP	C	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HCRTR1	3061	broad.mit.edu	37	1	32087211	32087211	+	Intron	SNP	C	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HDAC4	9759	broad.mit.edu	37	2	240267861	240267861	+	Intron	SNP	T	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HDAC9	9734	broad.mit.edu	37	7	18722473	18722473	+	Intron	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HDAC9	9734	broad.mit.edu	37	7	18748801	18748801	+	Intron	SNP	T	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HDAC9	9734	broad.mit.edu	37	7	18816738	18816738	+	Intron	SNP	C	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HDAC9	9734	broad.mit.edu	37	7	19021511	19021511	+	Intron	SNP	A	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HEATR7B2	133558	broad.mit.edu	37	5	41010047	41010047	+	Missense_Mutation	SNP	T	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HEATR7B2	133558	broad.mit.edu	37	5	41039318	41039318	+	Intron	SNP	G	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HECW1	23072	broad.mit.edu	37	7	43284408	43284408	+	Intron	SNP	T	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HECW1	23072	broad.mit.edu	37	7	43400571	43400571	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HEXA	3073	broad.mit.edu	37	15	72637954	72637954	+	Intron	SNP	C	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HGF	3082	broad.mit.edu	37	7	81334250	81334250	+	Intron	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HGF	3082	broad.mit.edu	37	7	81346574	81346574	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HHAT	55733	broad.mit.edu	37	1	210733205	210733205	+	Intron	SNP	A	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HHIP	64399	broad.mit.edu	37	4	145629644	145629644	+	Intron	SNP	C	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HIVEP3	59269	broad.mit.edu	37	1	42046898	42046898	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HK3	3101	broad.mit.edu	37	5	176316615	176316615	+	Intron	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HLA-B	3106	broad.mit.edu	37	6	31308992	31308992	+	Intron	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HLA-G	3135	broad.mit.edu	37	6	29796269	29796269	+	Intron	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HM13	81502	broad.mit.edu	37	20	30147503	30147503	+	Intron	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HMCN1	83872	broad.mit.edu	37	1	186086595	186086595	+	Silent	SNP	A	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HMP19	51617	broad.mit.edu	37	5	173491101	173491101	+	Intron	SNP	T	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HNRNPC	3183	broad.mit.edu	37	14	21725155	21725155	+	Intron	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HOXA4	3201	broad.mit.edu	37	7	27169623	27169623	+	Intron	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HPS5	11234	broad.mit.edu	37	11	18312940	18312940	+	Intron	SNP	T	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HPX	3263	broad.mit.edu	37	11	6452953	6452953	+	Silent	SNP	G	T	T	rs73398890	byFrequency;by1000genomes	TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HRH2	3274	broad.mit.edu	37	5	175103006	175103006	+	Intron	SNP	C	G	G	rs114524600	by1000genomes	TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HRNR	388697	broad.mit.edu	37	1	152192588	152192588	+	Missense_Mutation	SNP	C	T	T	rs140120787	byFrequency	TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HRNR	388697	broad.mit.edu	37	1	152193090	152193090	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HS3ST4	9951	broad.mit.edu	37	16	25933635	25933635	+	Intron	SNP	T	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HS3ST4	9951	broad.mit.edu	37	16	25944762	25944762	+	Intron	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HS3ST5	222537	broad.mit.edu	37	6	114379344	114379344	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HSF4	3299	broad.mit.edu	37	16	67203064	67203064	+	Intron	SNP	A	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HSPA14	51182	broad.mit.edu	37	10	14891656	14891656	+	Intron	SNP	A	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HTN3	3347	broad.mit.edu	37	4	70896560	70896560	+	Intron	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HYAL4	23553	broad.mit.edu	37	7	123516729	123516729	+	Intron	SNP	G	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IFI35	3430	broad.mit.edu	37	17	41158983	41158983	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IFNGR2	3460	broad.mit.edu	37	21	34793812	34793812	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IFT172	26160	broad.mit.edu	37	2	27679321	27679321	+	Intron	SNP	T	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IGF2BP1	10642	broad.mit.edu	37	17	47121403	47121403	+	Silent	SNP	G	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IGF2R	3482	broad.mit.edu	37	6	160485539	160485539	+	Silent	SNP	C	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IGFBP7	3490	broad.mit.edu	37	4	57919308	57919308	+	Intron	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IGLON5	402665	broad.mit.edu	37	19	51813678	51813678	+	5'Flank	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IGSF11	152404	broad.mit.edu	37	3	118623810	118623810	+	Intron	SNP	T	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IGSF11	152404	broad.mit.edu	37	3	118714380	118714380	+	Intron	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IGSF3	3321	broad.mit.edu	37	1	117172250	117172250	+	Intron	SNP	A	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL11RA	3590	broad.mit.edu	37	9	34658453	34658453	+	Intron	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL1F9	56300	broad.mit.edu	37	2	113736326	113736326	+	Intron	SNP	G	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL1RAPL1	11141	broad.mit.edu	37	X	29417342	29417342	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL20RB	53833	broad.mit.edu	37	3	136729000	136729000	+	Nonsense_Mutation	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL5RA	3568	broad.mit.edu	37	3	3139640	3139640	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IMMP1L	196294	broad.mit.edu	37	11	31514852	31514852	+	Intron	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
INPP4A	3631	broad.mit.edu	37	2	99180085	99180085	+	Silent	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
INPP4B	8821	broad.mit.edu	37	4	143051518	143051518	+	Intron	SNP	G	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
INPP4B	8821	broad.mit.edu	37	4	143209091	143209091	+	Intron	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
INPP5B	3633	broad.mit.edu	37	1	38353938	38353938	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
INSC	387755	broad.mit.edu	37	11	15257008	15257008	+	Intron	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
INTS4	92105	broad.mit.edu	37	11	77655343	77655343	+	Intron	SNP	G	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
INVS	27130	broad.mit.edu	37	9	102879511	102879511	+	Intron	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IPO11	51194	broad.mit.edu	37	5	61847905	61847905	+	Intron	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IQCH	64799	broad.mit.edu	37	15	67768233	67768233	+	Intron	SNP	C	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IRGC	56269	broad.mit.edu	37	19	44223594	44223594	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGA11	22801	broad.mit.edu	37	15	68600057	68600057	+	Intron	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGA1	3672	broad.mit.edu	37	5	52223297	52223297	+	Intron	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGA9	3680	broad.mit.edu	37	3	37539836	37539836	+	Intron	SNP	T	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGA9	3680	broad.mit.edu	37	3	37544053	37544053	+	Intron	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGAL	3683	broad.mit.edu	37	16	30524840	30524840	+	Intron	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGAM	3684	broad.mit.edu	37	16	31336187	31336187	+	Intron	SNP	T	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGAM	3684	broad.mit.edu	37	16	31344092	31344092	+	3'UTR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITPK1	3705	broad.mit.edu	37	14	93428791	93428791	+	Intron	SNP	C	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
JAK2	3717	broad.mit.edu	37	9	5041349	5041349	+	Intron	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
JAK3	3718	broad.mit.edu	37	19	17949164	17949164	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
JAM2	58494	broad.mit.edu	37	21	27081796	27081796	+	Intron	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
JAZF1	221895	broad.mit.edu	37	7	28084862	28084862	+	Intron	SNP	C	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
JMJD1C	221037	broad.mit.edu	37	10	64950488	64950488	+	Intron	SNP	T	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KALRN	8997	broad.mit.edu	37	3	124351421	124351421	+	Silent	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNA5	3741	broad.mit.edu	37	12	5154211	5154211	+	Missense_Mutation	SNP	G	A	A	rs148708451	byFrequency	TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNAB1	7881	broad.mit.edu	37	3	155972281	155972281	+	Intron	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNAB1	7881	broad.mit.edu	37	3	156097834	156097834	+	Intron	SNP	C	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNB2	9312	broad.mit.edu	37	8	73729098	73729099	+	Intron	DNP	GG	TT	TT			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNC2	3747	broad.mit.edu	37	12	75601343	75601343	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNH6	81033	broad.mit.edu	37	17	61615418	61615418	+	Intron	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNIP1	30820	broad.mit.edu	37	5	169988462	169988462	+	Intron	SNP	G	T	T	rs111501996		TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNIP4	80333	broad.mit.edu	37	4	21625603	21625603	+	Intron	SNP	T	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNK9	51305	broad.mit.edu	37	8	140631689	140631689	+	Intron	SNP	T	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNN2	3781	broad.mit.edu	37	5	113831781	113831781	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNN4	3783	broad.mit.edu	37	19	44283999	44283999	+	Intron	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNU1	157855	broad.mit.edu	37	8	36763324	36763324	+	Splice_Site	SNP	T	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCTD19	146212	broad.mit.edu	37	16	67328593	67328593	+	Missense_Mutation	SNP	A	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCTD3	51133	broad.mit.edu	37	1	215793797	215793797	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KEL	3792	broad.mit.edu	37	7	142642121	142642121	+	Intron	SNP	C	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KGFLP1	387628	broad.mit.edu	37	9	46724943	46724943	+	Intron	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KHDRBS3	10656	broad.mit.edu	37	8	136637632	136637632	+	Intron	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA0368	23392	broad.mit.edu	37	9	114158127	114158127	+	Intron	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA0556	23247	broad.mit.edu	37	16	27764359	27764359	+	Intron	SNP	C	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA0564	23078	broad.mit.edu	37	13	42266941	42266941	+	Intron	SNP	G	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA0922	23240	broad.mit.edu	37	4	154504570	154504570	+	Intron	SNP	A	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1199	57214	broad.mit.edu	37	15	81192983	81192983	+	Intron	SNP	G	C	C	rs57724852		TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1217	56243	broad.mit.edu	37	10	24574543	24574543	+	Intron	SNP	C	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1432	57589	broad.mit.edu	37	9	5729038	5729038	+	Intron	SNP	C	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1598	57698	broad.mit.edu	37	10	118854857	118854857	+	Intron	SNP	T	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA2026	158358	broad.mit.edu	37	9	5962096	5962096	+	Intron	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF26B	55083	broad.mit.edu	37	1	245849625	245849626	+	Frame_Shift_Del	DEL	GC	-	-			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF5B	3799	broad.mit.edu	37	10	32326079	32326079	+	Intron	SNP	A	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIFC2	90990	broad.mit.edu	37	8	145693120	145693121	+	Nonsense_Mutation	DNP	GG	TT	TT			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIR3DL3	115653	broad.mit.edu	37	19	55246672	55246672	+	Intron	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIRREL	55243	broad.mit.edu	37	1	158016081	158016081	+	Intron	SNP	G	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIRREL	55243	broad.mit.edu	37	1	158048855	158048855	+	Intron	SNP	T	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLHL28	54813	broad.mit.edu	37	14	45400639	45400639	+	Silent	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLK7	5650	broad.mit.edu	37	19	51480936	51480936	+	Silent	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLRC2	3822	broad.mit.edu	37	12	10586496	10586496	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRAS	3845	broad.mit.edu	37	12	25398285	25398285	+	Missense_Mutation	SNP	C	A	A	rs121913530		TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRT16	3868	broad.mit.edu	37	17	39767729	39767729	+	Frame_Shift_Del	DEL	C	-	-			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRT28	162605	broad.mit.edu	37	17	38953147	38953147	+	Intron	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRTAP1-3	81850	broad.mit.edu	37	17	39191122	39191122	+	5'Flank	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRTAP23-1	337963	broad.mit.edu	37	21	31720749	31720749	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRTAP4-4	84616	broad.mit.edu	37	17	39316933	39316933	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAIR1	3903	broad.mit.edu	37	19	54876412	54876412	+	5'UTR	DEL	G	-	-			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMA2	3908	broad.mit.edu	37	6	129250736	129250736	+	Intron	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMA2	3908	broad.mit.edu	37	6	129785486	129785486	+	Nonsense_Mutation	SNP	T	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMA2	3908	broad.mit.edu	37	6	129800123	129800123	+	Intron	SNP	A	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMB2	3913	broad.mit.edu	37	3	49162900	49162900	+	Nonsense_Mutation	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMB4	22798	broad.mit.edu	37	7	107746440	107746440	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMC1	3915	broad.mit.edu	37	1	183086517	183086517	+	Nonsense_Mutation	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMC2	3918	broad.mit.edu	37	1	183204723	183204723	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMC2	3918	broad.mit.edu	37	1	183209378	183209378	+	Intron	DEL	A	-	-			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LARGE	9215	broad.mit.edu	37	22	34007773	34007773	+	Intron	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LASS6	253782	broad.mit.edu	37	2	169574413	169574413	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LCE2D	353141	broad.mit.edu	37	1	152636946	152636946	+	3'UTR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LDB2	9079	broad.mit.edu	37	4	16617158	16617158	+	Intron	SNP	C	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LETM1	3954	broad.mit.edu	37	4	1827187	1827187	+	Intron	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LILRA4	23547	broad.mit.edu	37	19	54849465	54849465	+	Frame_Shift_Del	DEL	C	-	-			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LILRP2	79166	broad.mit.edu	37	19	55221659	55221659	+	RNA	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LIMCH1	22998	broad.mit.edu	37	4	41649117	41649117	+	Intron	SNP	A	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LINGO2	158038	broad.mit.edu	37	9	28411838	28411838	+	Intron	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LIPC	3990	broad.mit.edu	37	15	58799472	58799472	+	Intron	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LMO7	4008	broad.mit.edu	37	13	76399988	76399988	+	Intron	SNP	A	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LMO7	4008	broad.mit.edu	37	13	76412212	76412212	+	Intron	SNP	G	A	A	rs144453163	by1000genomes	TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC100128164	100128164	broad.mit.edu	37	3	169664661	169664661	+	RNA	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC100192378	100192378	broad.mit.edu	37	8	77524578	77524578	+	Intron	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC150786	150786	broad.mit.edu	37	2	132120476	132120476	+	3'UTR	SNP	A	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC150786	150786	broad.mit.edu	37	2	132120496	132120496	+	3'UTR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC255025	255025	broad.mit.edu	37	3	94655499	94655499	+	5'Flank	SNP	G	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC255025	255025	broad.mit.edu	37	3	94810618	94810618	+	Intron	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC255025	255025	broad.mit.edu	37	3	94880983	94880983	+	Intron	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC255025	255025	broad.mit.edu	37	3	94881351	94881351	+	Intron	SNP	C	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC283856	283856	broad.mit.edu	37	16	56195342	56195342	+	Intron	SNP	T	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC283867	283867	broad.mit.edu	37	16	65343860	65343860	+	Intron	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC283867	283867	broad.mit.edu	37	16	65539733	65539733	+	Intron	SNP	C	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC283922	283922	broad.mit.edu	37	16	74390869	74390869	+	Intron	SNP	C	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC284100	284100	broad.mit.edu	37	17	36230440	36230440	+	Intron	SNP	G	A	A	rs75714998		TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC285401	285401	broad.mit.edu	37	3	63006897	63006897	+	Intron	SNP	G	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC340094	340094	broad.mit.edu	37	5	5044396	5044396	+	Intron	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC390858	390858	broad.mit.edu	37	18	56718696	56718696	+	Intron	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC399959	399959	broad.mit.edu	37	11	121996374	121996374	+	Intron	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC440040	440040	broad.mit.edu	37	11	49598262	49598262	+	Silent	SNP	C	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC440173	440173	broad.mit.edu	37	9	89626699	89626699	+	Intron	SNP	C	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC550112	550112	broad.mit.edu	37	4	68582541	68582541	+	Intron	SNP	G	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC650623	650623	broad.mit.edu	37	10	81444712	81444712	+	RNA	SNP	C	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC651250	651250	broad.mit.edu	37	17	66123364	66123364	+	RNA	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC654342	654342	broad.mit.edu	37	2	91805820	91805820	+	RNA	SNP	T	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC729156	729156	broad.mit.edu	37	7	66280916	66280916	+	Intron	SNP	A	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC91948	91948	broad.mit.edu	37	15	98396618	98396618	+	Intron	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC96610	96610	broad.mit.edu	37	22	23104770	23104770	+	Intron	SNP	C	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC96610	96610	broad.mit.edu	37	22	23237850	23237850	+	RNA	SNP	A	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LONP2	83752	broad.mit.edu	37	16	48330040	48330040	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LPA	4018	broad.mit.edu	37	6	161027841	161027841	+	Intron	SNP	C	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LPHN2	23266	broad.mit.edu	37	1	82024520	82024520	+	Intron	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LPHN3	23284	broad.mit.edu	37	4	62903591	62903591	+	Intron	SNP	C	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LPPR5	163404	broad.mit.edu	37	1	99374265	99374265	+	Intron	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LPP	4026	broad.mit.edu	37	3	188122382	188122382	+	Intron	SNP	C	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRFN2	57497	broad.mit.edu	37	6	40365605	40365605	+	Intron	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRFN2	57497	broad.mit.edu	37	6	40415848	40415848	+	Intron	SNP	C	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRFN5	145581	broad.mit.edu	37	14	42190669	42190669	+	Intron	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRFN5	145581	broad.mit.edu	37	14	42206213	42206213	+	Intron	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRFN5	145581	broad.mit.edu	37	14	42368154	42368154	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRGUK	136332	broad.mit.edu	37	7	133916686	133916686	+	Intron	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRGUK	136332	broad.mit.edu	37	7	133926839	133926839	+	Intron	SNP	C	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRIG2	9860	broad.mit.edu	37	1	113636068	113636068	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP1B	53353	broad.mit.edu	37	2	141079827	141079827	+	Intron	SNP	T	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP1B	53353	broad.mit.edu	37	2	141114028	141114028	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP1B	53353	broad.mit.edu	37	2	141143292	141143292	+	Intron	SNP	C	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP1B	53353	broad.mit.edu	37	2	141159362	141159362	+	Intron	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP1B	53353	broad.mit.edu	37	2	141747239	141747239	+	Intron	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC16A	55604	broad.mit.edu	37	6	25448233	25448233	+	Intron	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC37A3	374819	broad.mit.edu	37	17	62893402	62893402	+	5'UTR	SNP	C	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC37A	9884	broad.mit.edu	37	17	44400281	44400281	+	Intron	SNP	G	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC4C	57689	broad.mit.edu	37	11	40164679	40164679	+	Intron	SNP	C	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC4C	57689	broad.mit.edu	37	11	40174427	40174427	+	Intron	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC4C	57689	broad.mit.edu	37	11	40648396	40648396	+	Intron	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC4C	57689	broad.mit.edu	37	11	41035801	41035801	+	Intron	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC4C	57689	broad.mit.edu	37	11	41453867	41453867	+	Intron	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC66	339977	broad.mit.edu	37	4	52861973	52861973	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC69	100130742	broad.mit.edu	37	8	92203142	92203142	+	Intron	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC7	57554	broad.mit.edu	37	1	70249105	70249105	+	Intron	SNP	G	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC7	57554	broad.mit.edu	37	1	70397075	70397076	+	Intron	DNP	CC	AA	AA			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRIQ1	84125	broad.mit.edu	37	12	85450946	85450946	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRIQ1	84125	broad.mit.edu	37	12	85596026	85596026	+	Intron	SNP	A	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRN2	10446	broad.mit.edu	37	1	204588041	204588041	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRTM4	80059	broad.mit.edu	37	2	77392422	77392422	+	Intron	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRTM4	80059	broad.mit.edu	37	2	77715147	77715147	+	Intron	SNP	G	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LSAMP	4045	broad.mit.edu	37	3	115734314	115734314	+	Intron	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LSAMP	4045	broad.mit.edu	37	3	115805312	115805312	+	Silent	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LSAMP	4045	broad.mit.edu	37	3	115848477	115848477	+	Intron	SNP	A	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LSAMP	4045	broad.mit.edu	37	3	116110345	116110345	+	Intron	SNP	G	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LUZP2	338645	broad.mit.edu	37	11	24910339	24910339	+	Intron	SNP	A	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LUZP2	338645	broad.mit.edu	37	11	24993418	24993418	+	Intron	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LY6G6C	80740	broad.mit.edu	37	6	31686700	31686700	+	3'UTR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LY75	4065	broad.mit.edu	37	2	160734640	160734640	+	Intron	SNP	T	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LY86	9450	broad.mit.edu	37	6	6595408	6595408	+	Intron	SNP	G	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAGI1	9223	broad.mit.edu	37	3	65449226	65449226	+	Intron	SNP	G	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAGI1	9223	broad.mit.edu	37	3	65449235	65449235	+	Intron	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAGI1	9223	broad.mit.edu	37	3	65623829	65623829	+	Intron	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MALT1	10892	broad.mit.edu	37	18	56409163	56409163	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAML2	84441	broad.mit.edu	37	11	95916186	95916186	+	Intron	SNP	A	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAML2	84441	broad.mit.edu	37	11	95980900	95980900	+	Intron	SNP	A	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAP7D1	55700	broad.mit.edu	37	1	36645329	36645329	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAPT	4137	broad.mit.edu	37	17	44043764	44043764	+	Intron	SNP	G	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MARCH11	441061	broad.mit.edu	37	5	16177940	16177940	+	Missense_Mutation	SNP	A	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MARCH1	55016	broad.mit.edu	37	4	164880486	164880486	+	Intron	SNP	A	C	C	rs146216353		TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MARCH1	55016	broad.mit.edu	37	4	165153425	165153425	+	Intron	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MARCH4	57574	broad.mit.edu	37	2	217130281	217130281	+	Intron	SNP	C	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MARK1	4139	broad.mit.edu	37	1	220773256	220773256	+	Intron	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MARK1	4139	broad.mit.edu	37	1	220801442	220801442	+	Intron	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MCM6	4175	broad.mit.edu	37	2	136603160	136603160	+	Intron	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MCOLN3	55283	broad.mit.edu	37	1	85488055	85488055	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MCTP1	79772	broad.mit.edu	37	5	94161657	94161657	+	Intron	SNP	C	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MDGA2	161357	broad.mit.edu	37	14	47573317	47573317	+	Intron	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MDGA2	161357	broad.mit.edu	37	14	47955236	47955236	+	Intron	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MED12L	116931	broad.mit.edu	37	3	151126947	151126947	+	Intron	SNP	G	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MED13L	23389	broad.mit.edu	37	12	116431765	116431765	+	Intron	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MEIS2	4212	broad.mit.edu	37	15	37329140	37329140	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MEIS3P1	4213	broad.mit.edu	37	17	15689989	15689989	+	5'Flank	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
METTL7A	25840	broad.mit.edu	37	12	51319244	51319244	+	Silent	SNP	G	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MFAP5	8076	broad.mit.edu	37	12	8807804	8807804	+	Intron	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MGAM	8972	broad.mit.edu	37	7	141730655	141730656	+	Intron	INS	-	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MGAT4C	25834	broad.mit.edu	37	12	86545735	86545735	+	Intron	SNP	T	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MGC42105	167359	broad.mit.edu	37	5	43210666	43210666	+	Intron	SNP	C	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MGST3	4259	broad.mit.edu	37	1	165623519	165623519	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MIER3	166968	broad.mit.edu	37	5	56267018	56267018	+	Intron	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MLL3	58508	broad.mit.edu	37	7	151975561	151975561	+	Intron	SNP	C	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MLLT10	8028	broad.mit.edu	37	10	21957873	21957873	+	Intron	SNP	A	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MME	4311	broad.mit.edu	37	3	154820393	154820393	+	Intron	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MNDA	4332	broad.mit.edu	37	1	158817774	158817774	+	Intron	SNP	A	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MON2	23041	broad.mit.edu	37	12	62929270	62929270	+	Intron	SNP	A	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MORC1	27136	broad.mit.edu	37	3	108759095	108759095	+	Intron	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MOSC2	54996	broad.mit.edu	37	1	220935100	220935100	+	Nonsense_Mutation	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MOSC2	54996	broad.mit.edu	37	1	220948265	220948265	+	Intron	SNP	A	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MRPL9	65005	broad.mit.edu	37	1	151732528	151732528	+	Nonstop_Mutation	SNP	A	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MS4A6A	64231	broad.mit.edu	37	11	59940032	59940032	+	Intron	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MSI2	124540	broad.mit.edu	37	17	55540911	55540911	+	Intron	SNP	C	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MSRA	4482	broad.mit.edu	37	8	10231181	10231181	+	Intron	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MSRA	4482	broad.mit.edu	37	8	9954744	9954744	+	Intron	SNP	C	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MSRB3	253827	broad.mit.edu	37	12	65744246	65744246	+	Intron	SNP	A	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTCH2	23788	broad.mit.edu	37	11	47657034	47657034	+	Intron	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTHFD1L	25902	broad.mit.edu	37	6	151256887	151256887	+	Intron	SNP	A	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTMR7	9108	broad.mit.edu	37	8	17228593	17228593	+	Missense_Mutation	SNP	C	A	A	rs148455057		TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTUS2	23281	broad.mit.edu	37	13	29682829	29682829	+	Intron	SNP	G	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC16	94025	broad.mit.edu	37	19	9059448	9059449	+	Frame_Shift_Ins	INS	-	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC16	94025	broad.mit.edu	37	19	9083754	9083754	+	Silent	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYBL2	4605	broad.mit.edu	37	20	42331376	42331376	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYF5	4617	broad.mit.edu	37	12	81112299	81112299	+	Intron	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH6	4624	broad.mit.edu	37	14	23854034	23854034	+	Intron	SNP	A	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH7	4625	broad.mit.edu	37	14	23883426	23883426	+	Intron	SNP	C	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH7	4625	broad.mit.edu	37	14	23902509	23902509	+	Intron	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYLK3	91807	broad.mit.edu	37	16	46764712	46764712	+	Intron	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO1D	4642	broad.mit.edu	37	17	30959714	30959714	+	Intron	SNP	C	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO3A	53904	broad.mit.edu	37	10	26453730	26453730	+	Intron	SNP	C	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO3A	53904	broad.mit.edu	37	10	26463598	26463598	+	Intron	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO3A	53904	broad.mit.edu	37	10	26482619	26482620	+	Intron	DNP	GG	TT	TT			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYOT	9499	broad.mit.edu	37	5	137114033	137114033	+	Intron	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NAALADL2	254827	broad.mit.edu	37	3	175090485	175090485	+	Intron	SNP	A	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NALCN	259232	broad.mit.edu	37	13	101930561	101930561	+	Intron	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NALCN	259232	broad.mit.edu	37	13	102029559	102029559	+	Intron	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NAV2	89797	broad.mit.edu	37	11	20070731	20070731	+	Silent	SNP	C	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NAV3	89795	broad.mit.edu	37	12	78513153	78513153	+	Silent	SNP	G	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NAV3	89795	broad.mit.edu	37	12	78513155	78513155	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBPF10	100132406	broad.mit.edu	37	1	145560273	145560273	+	Intron	SNP	T	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBPF9	400818	broad.mit.edu	37	1	144220750	144220750	+	Intron	DEL	C	-	-			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCALD	83988	broad.mit.edu	37	8	102948555	102948555	+	Intron	SNP	G	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCKAP1L	3071	broad.mit.edu	37	12	54925443	54925443	+	Intron	SNP	G	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCKAP5	344148	broad.mit.edu	37	2	134104065	134104065	+	Intron	SNP	G	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCOA2	10499	broad.mit.edu	37	8	71305459	71305459	+	Intron	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCRNA00113	54088	broad.mit.edu	37	21	29116977	29116977	+	Intron	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCS1	23413	broad.mit.edu	37	9	132984865	132984865	+	Intron	SNP	C	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCSTN	23385	broad.mit.edu	37	1	160319871	160319871	+	Intron	SNP	C	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NDST4	64579	broad.mit.edu	37	4	115798995	115798995	+	Intron	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NDST4	64579	broad.mit.edu	37	4	115804843	115804843	+	Intron	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NDUFS2	4720	broad.mit.edu	37	1	161169574	161169574	+	Intron	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NEBL	10529	broad.mit.edu	37	10	21134261	21134261	+	Nonsense_Mutation	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NEK10	152110	broad.mit.edu	37	3	27212575	27212575	+	Intron	SNP	G	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NEK7	140609	broad.mit.edu	37	1	198225544	198225544	+	Intron	SNP	A	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NELL1	4745	broad.mit.edu	37	11	20930635	20930635	+	Intron	SNP	T	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NELL1	4745	broad.mit.edu	37	11	21380192	21380192	+	Intron	SNP	A	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NELL2	4753	broad.mit.edu	37	12	45013691	45013691	+	Intron	SNP	A	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NELL2	4753	broad.mit.edu	37	12	45135755	45135755	+	Intron	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NETO1	81832	broad.mit.edu	37	18	70417314	70417314	+	Silent	SNP	G	A	A	rs144601570	byFrequency	TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NFATC1	4772	broad.mit.edu	37	18	77170932	77170932	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NFATC3	4775	broad.mit.edu	37	16	68200994	68200994	+	Intron	SNP	A	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NHEDC1	150159	broad.mit.edu	37	4	103870629	103870629	+	Intron	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NINL	22981	broad.mit.edu	37	20	25456963	25456963	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NKRF	55922	broad.mit.edu	37	X	118723942	118723942	+	Silent	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLGN1	22871	broad.mit.edu	37	3	173197166	173197166	+	Intron	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLGN1	22871	broad.mit.edu	37	3	173342987	173342987	+	Intron	SNP	A	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLRC4	58484	broad.mit.edu	37	2	32477419	32477419	+	Intron	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLRP3	114548	broad.mit.edu	37	1	247594710	247594710	+	Intron	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLRP3	114548	broad.mit.edu	37	1	247599354	247599354	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLRP4	147945	broad.mit.edu	37	19	56372702	56372702	+	Intron	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NMBR	4829	broad.mit.edu	37	6	142409565	142409565	+	Silent	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NMNAT2	23057	broad.mit.edu	37	1	183387385	183387385	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NOL4	8715	broad.mit.edu	37	18	31599588	31599588	+	Intron	SNP	T	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NOP16	51491	broad.mit.edu	37	5	175811104	175811104	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NPAS3	64067	broad.mit.edu	37	14	33480887	33480887	+	Intron	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NPAS3	64067	broad.mit.edu	37	14	33644124	33644124	+	Intron	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NPAS3	64067	broad.mit.edu	37	14	34119018	34119018	+	Intron	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NPAS3	64067	broad.mit.edu	37	14	34138644	34138644	+	Intron	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NPAS3	64067	broad.mit.edu	37	14	34233418	34233418	+	Intron	SNP	T	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NPL	80896	broad.mit.edu	37	1	182785877	182785878	+	Missense_Mutation	DNP	GG	TC	TC			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NPRL2	10641	broad.mit.edu	37	3	50387112	50387112	+	Missense_Mutation	SNP	T	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NPVF	64111	broad.mit.edu	37	7	25264721	25264721	+	3'UTR	SNP	A	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NPY2R	4887	broad.mit.edu	37	4	156135259	156135259	+	Silent	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NPY6R	4888	broad.mit.edu	37	5	137144163	137144163	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NR1I2	8856	broad.mit.edu	37	3	119501728	119501728	+	Intron	SNP	G	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NR3C1	2908	broad.mit.edu	37	5	142816444	142816444	+	5'Flank	SNP	T	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRD1	4898	broad.mit.edu	37	1	52276267	52276267	+	Intron	SNP	A	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRG1	3084	broad.mit.edu	37	8	31657802	31657802	+	Intron	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRG1	3084	broad.mit.edu	37	8	32251694	32251694	+	Intron	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRG1	3084	broad.mit.edu	37	8	32307800	32307800	+	Intron	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRG1	3084	broad.mit.edu	37	8	32330012	32330012	+	Intron	SNP	G	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRG3	10718	broad.mit.edu	37	10	83908288	83908288	+	Intron	SNP	C	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRG3	10718	broad.mit.edu	37	10	84151204	84151204	+	Intron	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRG3	10718	broad.mit.edu	37	10	84541973	84541973	+	Intron	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRXN1	9378	broad.mit.edu	37	2	50880393	50880393	+	Intron	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRXN3	9369	broad.mit.edu	37	14	79432671	79432671	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRXN3	9369	broad.mit.edu	37	14	79482857	79482857	+	Intron	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRXN3	9369	broad.mit.edu	37	14	79941034	79941034	+	Intron	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NSD1	64324	broad.mit.edu	37	5	176638954	176638954	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NSMCE4A	54780	broad.mit.edu	37	10	123725004	123725004	+	Intron	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NT5C1B	93034	broad.mit.edu	37	2	18745158	18745158	+	Silent	SNP	G	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NTM	50863	broad.mit.edu	37	11	131308495	131308495	+	Intron	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NTM	50863	broad.mit.edu	37	11	131341585	131341585	+	Intron	SNP	G	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NTM	50863	broad.mit.edu	37	11	131597476	131597476	+	Intron	SNP	G	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NTM	50863	broad.mit.edu	37	11	131689106	131689107	+	Intron	DNP	GG	CT	CT			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NTM	50863	broad.mit.edu	37	11	131727880	131727880	+	Intron	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NTM	50863	broad.mit.edu	37	11	131795936	131795936	+	Intron	SNP	A	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NTM	50863	broad.mit.edu	37	11	131863821	131863821	+	Intron	SNP	T	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NTM	50863	broad.mit.edu	37	11	131866922	131866922	+	Intron	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NTM	50863	broad.mit.edu	37	11	131876666	131876666	+	Intron	SNP	G	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NTM	50863	broad.mit.edu	37	11	131999530	131999530	+	Intron	SNP	A	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NTM	50863	broad.mit.edu	37	11	132016466	132016466	+	Intron	SNP	T	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NTM	50863	broad.mit.edu	37	11	132029351	132029351	+	Intron	SNP	T	C	C	rs147159566	by1000genomes	TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NTM	50863	broad.mit.edu	37	11	132164453	132164453	+	Intron	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NTNG1	22854	broad.mit.edu	37	1	107712764	107712764	+	Intron	SNP	T	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NTNG2	84628	broad.mit.edu	37	9	135073796	135073796	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NTRK2	4915	broad.mit.edu	37	9	87549120	87549120	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NTRK2	4915	broad.mit.edu	37	9	87599839	87599839	+	Intron	SNP	A	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NTRK3	4916	broad.mit.edu	37	15	88445390	88445390	+	Intron	SNP	C	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NTRK3	4916	broad.mit.edu	37	15	88483717	88483717	+	Intron	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NUF2	83540	broad.mit.edu	37	1	163295725	163295725	+	Intron	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NUP205	23165	broad.mit.edu	37	7	135262700	135262700	+	Silent	SNP	C	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NUP93	9688	broad.mit.edu	37	16	56785600	56785600	+	Intron	SNP	G	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NUSAP1	51203	broad.mit.edu	37	15	41667974	41667974	+	Silent	SNP	G	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NXF4	55999	broad.mit.edu	37	X	101821223	101821223	+	Intron	DEL	A	-	-			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NXPH1	30010	broad.mit.edu	37	7	8650622	8650622	+	Intron	SNP	G	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OCIAD2	132299	broad.mit.edu	37	4	48909746	48909746	+	5'Flank	SNP	A	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ODF1	4956	broad.mit.edu	37	8	103572954	103572954	+	Nonsense_Mutation	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ODZ2	57451	broad.mit.edu	37	5	167054025	167054025	+	Intron	SNP	A	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ODZ2	57451	broad.mit.edu	37	5	167182137	167182137	+	Intron	DEL	G	-	-			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ODZ2	57451	broad.mit.edu	37	5	167416896	167416896	+	Intron	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ODZ2	57451	broad.mit.edu	37	5	167645119	167645119	+	Intron	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OOEP	441161	broad.mit.edu	37	6	74078998	74078998	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OPCML	4978	broad.mit.edu	37	11	132410605	132410605	+	Intron	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OPCML	4978	broad.mit.edu	37	11	132621941	132621941	+	Intron	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR10A5	144124	broad.mit.edu	37	11	6865181	6865181	+	5'Flank	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR10P1	121130	broad.mit.edu	37	12	56031458	56031458	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR10Q1	219960	broad.mit.edu	37	11	57995704	57995704	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR13C8	138802	broad.mit.edu	37	9	107332204	107332204	+	Silent	SNP	T	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR14C36	127066	broad.mit.edu	37	1	248512712	248512712	+	Silent	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2A12	346525	broad.mit.edu	37	7	143789231	143789231	+	5'Flank	SNP	C	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2L13	284521	broad.mit.edu	37	1	248220307	248220307	+	Intron	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2L13	284521	broad.mit.edu	37	1	248225879	248225879	+	Intron	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2M2	391194	broad.mit.edu	37	1	248343503	248343503	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2M4	26245	broad.mit.edu	37	1	248402846	248402846	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4C46	119749	broad.mit.edu	37	11	51515365	51515365	+	Silent	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR52E4	390081	broad.mit.edu	37	11	5906249	5906249	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR56A4	120793	broad.mit.edu	37	11	6023495	6023495	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR6Y1	391112	broad.mit.edu	37	1	158517140	158517140	+	Silent	SNP	G	T	T	rs114824139	byFrequency;by1000genomes	TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR8H1	219469	broad.mit.edu	37	11	56058177	56058177	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR8H1	219469	broad.mit.edu	37	11	56058181	56058181	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR8J1	219477	broad.mit.edu	37	11	56128532	56128532	+	Silent	SNP	T	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ORM1	5004	broad.mit.edu	37	9	117093844	117093844	+	Intron	SNP	C	A	A	rs79569527		TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OS9	10956	broad.mit.edu	37	12	58111181	58111181	+	Intron	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OSGEP	55644	broad.mit.edu	37	14	20922834	20922834	+	Silent	SNP	C	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OVOL2	58495	broad.mit.edu	37	20	18005392	18005392	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PACRG	135138	broad.mit.edu	37	6	163482453	163482453	+	Intron	SNP	C	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAK7	57144	broad.mit.edu	37	20	9521521	9521521	+	Intron	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PALLD	23022	broad.mit.edu	37	4	169478987	169478987	+	Intron	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PALLD	23022	broad.mit.edu	37	4	169519568	169519568	+	Intron	SNP	A	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAPOLA	10914	broad.mit.edu	37	14	97003388	97003388	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAPPA2	60676	broad.mit.edu	37	1	176781402	176781402	+	Intron	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAPPA	5069	broad.mit.edu	37	9	118938423	118938423	+	Intron	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAQR8	85315	broad.mit.edu	37	6	52236512	52236512	+	Intron	SNP	T	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PARD3	56288	broad.mit.edu	37	10	34541539	34541539	+	Intron	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAX1	5075	broad.mit.edu	37	20	21689905	21689905	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAX5	5079	broad.mit.edu	37	9	36899661	36899661	+	Intron	SNP	A	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAX5	5079	broad.mit.edu	37	9	37010194	37010194	+	Intron	SNP	G	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH11X	27328	broad.mit.edu	37	X	91642709	91642709	+	Intron	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH11X	27328	broad.mit.edu	37	X	91714785	91714785	+	Intron	SNP	G	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH15	65217	broad.mit.edu	37	10	55892655	55892655	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH7	5099	broad.mit.edu	37	4	30845112	30845112	+	Intron	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH9	5101	broad.mit.edu	37	13	67083038	67083038	+	Intron	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHA7	56141	broad.mit.edu	37	5	140215064	140215064	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHB11	56125	broad.mit.edu	37	5	140580573	140580573	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHB5	26167	broad.mit.edu	37	5	140515335	140515335	+	Nonsense_Mutation	SNP	C	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHB9	56127	broad.mit.edu	37	5	140568929	140568929	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHGA1	56114	broad.mit.edu	37	5	140710332	140710332	+	Silent	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHGA5	56110	broad.mit.edu	37	5	140744199	140744200	+	Frame_Shift_Del	DEL	TG	-	-			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHGA7	56108	broad.mit.edu	37	5	140764329	140764329	+	Silent	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCSK6	5046	broad.mit.edu	37	15	101971605	101971606	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE11A	50940	broad.mit.edu	37	2	178762914	178762914	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE1A	5136	broad.mit.edu	37	2	183194265	183194265	+	Intron	SNP	C	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE3A	5139	broad.mit.edu	37	12	20523096	20523096	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE3B	5140	broad.mit.edu	37	11	14802532	14802532	+	Intron	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE4DIP	9659	broad.mit.edu	37	1	144930944	144930944	+	Intron	SNP	T	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE6A	5145	broad.mit.edu	37	5	149283770	149283770	+	Intron	SNP	A	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE8B	8622	broad.mit.edu	37	5	76679709	76679709	+	Intron	SNP	C	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDK4	5166	broad.mit.edu	37	7	95219058	95219058	+	Intron	SNP	T	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDLIM5	10611	broad.mit.edu	37	4	95427330	95427330	+	Intron	SNP	T	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDX1	3651	broad.mit.edu	37	13	28495446	28495446	+	Intron	SNP	C	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDZD2	23037	broad.mit.edu	37	5	31679642	31679642	+	Intron	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDZD7	79955	broad.mit.edu	37	10	102781463	102781463	+	Intron	SNP	G	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDZRN4	29951	broad.mit.edu	37	12	41638333	41638333	+	Intron	SNP	T	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PET112L	5188	broad.mit.edu	37	4	152626235	152626235	+	Intron	SNP	G	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PGCP	10404	broad.mit.edu	37	8	97834636	97834636	+	Intron	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PGM5	5239	broad.mit.edu	37	9	71006716	71006716	+	Intron	SNP	G	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PGR	5241	broad.mit.edu	37	11	100912648	100912648	+	Intron	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PHACTR4	65979	broad.mit.edu	37	1	28792381	28792381	+	Intron	SNP	G	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PHF17	79960	broad.mit.edu	37	4	129783000	129783000	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PHF2	5253	broad.mit.edu	37	9	96438821	96438821	+	Intron	SNP	C	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PHF8	23133	broad.mit.edu	37	X	53989451	53989451	+	Intron	SNP	T	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PHIP	55023	broad.mit.edu	37	6	79770483	79770483	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PHLDB2	90102	broad.mit.edu	37	3	111542024	111542024	+	Intron	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PHLDB2	90102	broad.mit.edu	37	3	111593363	111593363	+	Intron	SNP	C	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PHTF2	57157	broad.mit.edu	37	7	77469357	77469357	+	5'Flank	SNP	A	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PID1	55022	broad.mit.edu	37	2	229937922	229937922	+	Intron	SNP	T	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIGR	5284	broad.mit.edu	37	1	207109005	207109005	+	Nonsense_Mutation	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIK3R5	23533	broad.mit.edu	37	17	8790535	8790535	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PITPNC1	26207	broad.mit.edu	37	17	65453695	65453695	+	Intron	SNP	G	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PKD1L1	168507	broad.mit.edu	37	7	47952643	47952643	+	Intron	SNP	C	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PKIB	5570	broad.mit.edu	37	6	122835532	122835533	+	Intron	DNP	GG	TT	TT			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLA2G2F	64600	broad.mit.edu	37	1	20466690	20466690	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLAT	5327	broad.mit.edu	37	8	42045149	42045149	+	Intron	SNP	G	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLCB1	23236	broad.mit.edu	37	20	8176417	8176417	+	Intron	SNP	A	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLCD4	84812	broad.mit.edu	37	2	219498867	219498867	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLCL1	5334	broad.mit.edu	37	2	198817944	198817944	+	Intron	SNP	T	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLCL2	23228	broad.mit.edu	37	3	16886919	16886919	+	Intron	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLEKHA7	144100	broad.mit.edu	37	11	16824567	16824567	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLEKHA8	84725	broad.mit.edu	37	7	30126942	30126942	+	Intron	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLEKHH2	130271	broad.mit.edu	37	2	43908223	43908223	+	Intron	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLXDC2	84898	broad.mit.edu	37	10	20466206	20466207	+	Intron	INS	-	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLXNA4	91584	broad.mit.edu	37	7	131914659	131914659	+	Intron	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLXNA4	91584	broad.mit.edu	37	7	131994150	131994150	+	Intron	SNP	C	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PMS1	5378	broad.mit.edu	37	2	190742055	190742055	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PMS2CL	441194	broad.mit.edu	37	7	6759690	6759690	+	Intron	SNP	C	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PNOC	5368	broad.mit.edu	37	8	28172051	28172051	+	5'Flank	SNP	C	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POLQ	10721	broad.mit.edu	37	3	121251800	121251801	+	Intron	DEL	AG	-	-			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POLR2D	5433	broad.mit.edu	37	2	128605739	128605739	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POM121L12	285877	broad.mit.edu	37	7	53104135	53104135	+	Silent	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POSTN	10631	broad.mit.edu	37	13	38144929	38144929	+	Intron	SNP	A	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POTEH	23784	broad.mit.edu	37	22	16256758	16256758	+	Intron	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POU6F2	11281	broad.mit.edu	37	7	39481806	39481806	+	Intron	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPARGC1B	133522	broad.mit.edu	37	5	149210434	149210434	+	Silent	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPFIA2	8499	broad.mit.edu	37	12	81751068	81751068	+	Intron	SNP	A	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPFIA2	8499	broad.mit.edu	37	12	81768424	81768424	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPFIBP1	8496	broad.mit.edu	37	12	27746435	27746435	+	Intron	SNP	A	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPFIBP2	8495	broad.mit.edu	37	11	7539040	7539041	+	Intron	DNP	GG	TT	TT			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPFIBP2	8495	broad.mit.edu	37	11	7631349	7631349	+	Intron	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPIF	10105	broad.mit.edu	37	10	81108691	81108691	+	Intron	DEL	G	-	-			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPIG	9360	broad.mit.edu	37	2	170460774	170460774	+	Intron	SNP	T	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPP2R2A	5520	broad.mit.edu	37	8	25664612	25664612	+	Intron	SNP	C	A	A	rs141291605	by1000genomes	TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPP2R2B	5521	broad.mit.edu	37	5	146091238	146091238	+	Intron	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPP2R2B	5521	broad.mit.edu	37	5	146099443	146099443	+	Intron	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPP2R2B	5521	broad.mit.edu	37	5	146404594	146404594	+	Intron	SNP	T	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PREX1	57580	broad.mit.edu	37	20	47280291	47280291	+	Intron	SNP	T	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PREX1	57580	broad.mit.edu	37	20	47307482	47307482	+	Intron	SNP	C	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRG4	10216	broad.mit.edu	37	1	186280450	186280450	+	Intron	SNP	T	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRIM2	5558	broad.mit.edu	37	6	57398409	57398409	+	Intron	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRIM2	5558	broad.mit.edu	37	6	57454096	57454096	+	Intron	SNP	T	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRIMA1	145270	broad.mit.edu	37	14	94187270	94187270	+	3'UTR	SNP	T	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRKCB	5579	broad.mit.edu	37	16	24104040	24104040	+	Intron	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRKCG	5582	broad.mit.edu	37	19	54403758	54403758	+	Intron	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRKG1	5592	broad.mit.edu	37	10	53107134	53107134	+	Intron	SNP	T	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRMT10	90826	broad.mit.edu	37	4	148601524	148601524	+	Silent	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PROP1	5626	broad.mit.edu	37	5	177421211	177421211	+	Nonsense_Mutation	SNP	G	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRPF4B	8899	broad.mit.edu	37	6	4032299	4032299	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRR16	51334	broad.mit.edu	37	5	119920663	119920663	+	Intron	SNP	C	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSAPL1	768239	broad.mit.edu	37	4	7435644	7435644	+	Silent	SNP	C	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSG4	5672	broad.mit.edu	37	19	43706895	43706895	+	Intron	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSG6	5675	broad.mit.edu	37	19	43552632	43552632	+	Intron	SNP	T	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSORS1C2	170680	broad.mit.edu	37	6	31105978	31105978	+	Nonsense_Mutation	SNP	C	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTGER4	5734	broad.mit.edu	37	5	40681904	40681904	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTK2B	2185	broad.mit.edu	37	8	27287677	27287677	+	Intron	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPN13	5783	broad.mit.edu	37	4	87687592	87687592	+	Silent	SNP	C	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPN21	11099	broad.mit.edu	37	14	88998588	88998588	+	Intron	SNP	C	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRB	5787	broad.mit.edu	37	12	70938457	70938457	+	Intron	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRD	5789	broad.mit.edu	37	9	10192600	10192600	+	Intron	SNP	C	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRD	5789	broad.mit.edu	37	9	8814405	8814405	+	Intron	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRD	5789	broad.mit.edu	37	9	8951531	8951531	+	Intron	SNP	G	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRD	5789	broad.mit.edu	37	9	9762500	9762500	+	Intron	SNP	C	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRG	5793	broad.mit.edu	37	3	61839410	61839410	+	Intron	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRQ	374462	broad.mit.edu	37	12	80913817	80913817	+	Intron	SNP	G	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRT	11122	broad.mit.edu	37	20	41095497	41095497	+	Intron	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRT	11122	broad.mit.edu	37	20	41180799	41180799	+	Intron	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRT	11122	broad.mit.edu	37	20	41473281	41473281	+	Intron	SNP	C	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PXDNL	137902	broad.mit.edu	37	8	52323874	52323874	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PXDNL	137902	broad.mit.edu	37	8	52373873	52373873	+	Intron	SNP	A	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PXDNL	137902	broad.mit.edu	37	8	52412134	52412135	+	Intron	DNP	CC	AA	AA			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PXDNL	137902	broad.mit.edu	37	8	52412432	52412432	+	Intron	SNP	G	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PXDNL	137902	broad.mit.edu	37	8	52547932	52547932	+	Intron	SNP	A	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PYROXD2	84795	broad.mit.edu	37	10	100143858	100143858	+	Intron	SNP	G	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
QRSL1	55278	broad.mit.edu	37	6	107085368	107085368	+	Intron	SNP	A	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
QSER1	79832	broad.mit.edu	37	11	32976924	32976924	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAB22A	57403	broad.mit.edu	37	20	56929224	56929224	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RABEPK	10244	broad.mit.edu	37	9	127996228	127996228	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAD50	10111	broad.mit.edu	37	5	131926800	131926800	+	Intron	SNP	A	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RALB	5899	broad.mit.edu	37	2	121047414	121047414	+	Intron	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RALGAPA2	57186	broad.mit.edu	37	20	20651907	20651907	+	Intron	SNP	G	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RALYL	138046	broad.mit.edu	37	8	85211381	85211381	+	Intron	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RALYL	138046	broad.mit.edu	37	8	85330046	85330046	+	Intron	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RALYL	138046	broad.mit.edu	37	8	85339872	85339872	+	Intron	SNP	C	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RANBP17	64901	broad.mit.edu	37	5	170493026	170493026	+	Intron	SNP	A	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RANBP3L	202151	broad.mit.edu	37	5	36265170	36265170	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAPGEF5	9771	broad.mit.edu	37	7	22297932	22297932	+	Intron	SNP	G	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RASGRF1	5923	broad.mit.edu	37	15	79327417	79327417	+	Intron	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RB1	5925	broad.mit.edu	37	13	48892151	48892151	+	Intron	SNP	C	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RCAN2	10231	broad.mit.edu	37	6	46293015	46293015	+	Intron	SNP	G	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RCN1	5954	broad.mit.edu	37	11	31855188	31855188	+	Intron	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RCN1	5954	broad.mit.edu	37	11	31888659	31888659	+	Intron	SNP	A	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
REG1B	5968	broad.mit.edu	37	2	79312458	79312458	+	Intron	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
REG1B	5968	broad.mit.edu	37	2	79314141	79314141	+	Intron	SNP	C	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
REG3G	130120	broad.mit.edu	37	2	79253249	79253249	+	Silent	SNP	G	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RELN	5649	broad.mit.edu	37	7	103183080	103183080	+	Intron	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RELN	5649	broad.mit.edu	37	7	103521001	103521001	+	Intron	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RERG	85004	broad.mit.edu	37	12	15321305	15321305	+	Intron	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
REXO1L1	254958	broad.mit.edu	37	8	86575747	86575747	+	5'Flank	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RFT1	91869	broad.mit.edu	37	3	53156497	53156498	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RFX4	5992	broad.mit.edu	37	12	107072296	107072296	+	Intron	SNP	T	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RGL1	23179	broad.mit.edu	37	1	183661410	183661410	+	Intron	SNP	G	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RGS18	64407	broad.mit.edu	37	1	192127942	192127942	+	Intron	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RGS21	431704	broad.mit.edu	37	1	192307679	192307679	+	Intron	SNP	G	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RGS6	9628	broad.mit.edu	37	14	72600538	72600538	+	Intron	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RGS6	9628	broad.mit.edu	37	14	72701827	72701827	+	Intron	SNP	G	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RGS6	9628	broad.mit.edu	37	14	72932145	72932145	+	Intron	SNP	G	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RGS7BP	401190	broad.mit.edu	37	5	63872993	63872993	+	Intron	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RGS7	6000	broad.mit.edu	37	1	241319374	241319374	+	Intron	SNP	A	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RIC8B	55188	broad.mit.edu	37	12	107224946	107224946	+	Intron	SNP	C	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RICH2	9912	broad.mit.edu	37	17	12862136	12862136	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RIF1	55183	broad.mit.edu	37	2	152299849	152299849	+	Intron	SNP	T	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RIMS2	9699	broad.mit.edu	37	8	105259300	105259300	+	Intron	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RIT2	6014	broad.mit.edu	37	18	40500778	40500778	+	Intron	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RMND5A	64795	broad.mit.edu	37	2	87998075	87998075	+	Intron	SNP	T	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNF17	56163	broad.mit.edu	37	13	25338460	25338460	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNF17	56163	broad.mit.edu	37	13	25439108	25439108	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNF38	152006	broad.mit.edu	37	9	36356416	36356416	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ROBO1	6091	broad.mit.edu	37	3	78763601	78763601	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ROBO1	6091	broad.mit.edu	37	3	79250254	79250254	+	Intron	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ROBO1	6091	broad.mit.edu	37	3	79815074	79815074	+	Intron	SNP	T	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ROBO2	6092	broad.mit.edu	37	3	77112280	77112280	+	Intron	SNP	G	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ROR1	4919	broad.mit.edu	37	1	64516641	64516641	+	Intron	SNP	A	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ROR2	4920	broad.mit.edu	37	9	94473493	94473493	+	Intron	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPA1	6117	broad.mit.edu	37	17	1764527	1764527	+	Intron	SNP	C	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPH3A	22895	broad.mit.edu	37	12	113213545	113213545	+	Intron	SNP	G	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPH3A	22895	broad.mit.edu	37	12	113319700	113319700	+	Intron	SNP	C	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPIA	22934	broad.mit.edu	37	2	89003403	89003403	+	Intron	SNP	C	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPP14	11102	broad.mit.edu	37	3	58296432	58296432	+	Intron	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPS6KA5	9252	broad.mit.edu	37	14	91467469	91467469	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RRN3	54700	broad.mit.edu	37	16	15159050	15159050	+	Intron	SNP	C	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RTKN	6242	broad.mit.edu	37	2	74659500	74659500	+	Intron	SNP	T	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR2	6262	broad.mit.edu	37	1	237661786	237661786	+	Intron	SNP	A	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR2	6262	broad.mit.edu	37	1	237935269	237935269	+	Intron	SNP	A	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR2	6262	broad.mit.edu	37	1	237961262	237961262	+	Intron	SNP	G	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR2	6262	broad.mit.edu	37	1	237982714	237982714	+	Intron	SNP	C	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SASH1	23328	broad.mit.edu	37	6	148867326	148867326	+	Intron	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCHIP1	29970	broad.mit.edu	37	3	158920739	158920739	+	Intron	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCHIP1	29970	broad.mit.edu	37	3	159116723	159116723	+	Intron	SNP	T	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCN10A	6336	broad.mit.edu	37	3	38835652	38835652	+	5'Flank	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCN11A	11280	broad.mit.edu	37	3	38926863	38926863	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCN3A	6328	broad.mit.edu	37	2	165947591	165947591	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCRIB	23513	broad.mit.edu	37	8	144895816	144895816	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SDCCAG8	10806	broad.mit.edu	37	1	243507640	243507640	+	Intron	SNP	G	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SDHAP2	727956	broad.mit.edu	37	3	195402344	195402344	+	Intron	SNP	T	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SDK2	54549	broad.mit.edu	37	17	71512680	71512680	+	Intron	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEC61G	23480	broad.mit.edu	37	7	54826849	54826849	+	Intron	SNP	A	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEC63	11231	broad.mit.edu	37	6	108192698	108192698	+	3'UTR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SELK	58515	broad.mit.edu	37	3	53925866	53925866	+	5'UTR	SNP	T	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEMA4F	10505	broad.mit.edu	37	2	74906263	74906263	+	Intron	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEMA5B	54437	broad.mit.edu	37	3	122748402	122748402	+	5'Flank	SNP	T	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEMA6A	57556	broad.mit.edu	37	5	115803247	115803247	+	Intron	SNP	C	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SERGEF	26297	broad.mit.edu	37	11	17834816	17834816	+	Intron	SNP	C	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SERGEF	26297	broad.mit.edu	37	11	17974487	17974487	+	Intron	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SERGEF	26297	broad.mit.edu	37	11	17980911	17980911	+	Intron	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SERPINA11	256394	broad.mit.edu	37	14	94909716	94909716	+	Intron	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SERPINA12	145264	broad.mit.edu	37	14	94962655	94962655	+	Intron	SNP	A	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SERPINB5	5268	broad.mit.edu	37	18	61166541	61166541	+	Intron	SNP	C	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SETD4	54093	broad.mit.edu	37	21	37417781	37417781	+	Intron	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEZ6L	23544	broad.mit.edu	37	22	26634371	26634371	+	Intron	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SF3B3	23450	broad.mit.edu	37	16	70572395	70572395	+	Intron	SNP	A	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SFMBT2	57713	broad.mit.edu	37	10	7371811	7371811	+	Intron	SNP	C	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SFRS1	6426	broad.mit.edu	37	17	56084223	56084223	+	Intron	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SGCD	6444	broad.mit.edu	37	5	155372985	155372985	+	Intron	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SGCD	6444	broad.mit.edu	37	5	155457717	155457717	+	Intron	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SGCD	6444	broad.mit.edu	37	5	155771558	155771558	+	Silent	SNP	G	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SGCG	6445	broad.mit.edu	37	13	23752433	23752433	+	5'Flank	SNP	T	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SGCZ	137868	broad.mit.edu	37	8	14596351	14596352	+	Intron	DNP	GG	CT	CT			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SGIP1	84251	broad.mit.edu	37	1	67091582	67091582	+	Missense_Mutation	SNP	C	A	A	rs149425441		TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SGMS1	259230	broad.mit.edu	37	10	52113679	52113679	+	Intron	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SGMS1	259230	broad.mit.edu	37	10	52113683	52113683	+	Intron	SNP	G	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SH3GL3	6457	broad.mit.edu	37	15	84188716	84188716	+	Intron	SNP	T	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SH3GL3	6457	broad.mit.edu	37	15	84192042	84192042	+	Intron	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SH3PXD2B	285590	broad.mit.edu	37	5	171766497	171766497	+	Nonsense_Mutation	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SH3TC2	79628	broad.mit.edu	37	5	148083880	148083880	+	Intron	SNP	A	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SHANK1	50944	broad.mit.edu	37	19	51175329	51175329	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SHANK2	22941	broad.mit.edu	37	11	70641891	70641891	+	Intron	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SHISA9	729993	broad.mit.edu	37	16	13284215	13284215	+	Intron	SNP	G	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SHISA9	729993	broad.mit.edu	37	16	13322294	13322294	+	Intron	SNP	T	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SHISA9	729993	broad.mit.edu	37	16	13328554	13328554	+	Intron	SNP	A	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SHROOM4	57477	broad.mit.edu	37	X	50428441	50428441	+	Intron	SNP	T	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SIGLEC6	946	broad.mit.edu	37	19	52033171	52033171	+	Silent	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SIGLEC7	27036	broad.mit.edu	37	19	51655579	51655579	+	Intron	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SIL1	64374	broad.mit.edu	37	5	138428620	138428620	+	Intron	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SIPA1L1	26037	broad.mit.edu	37	14	71958800	71958800	+	Intron	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SI	6476	broad.mit.edu	37	3	164700808	164700808	+	Silent	SNP	T	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC13A1	6561	broad.mit.edu	37	7	122774738	122774738	+	Intron	SNP	C	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC14A2	8170	broad.mit.edu	37	18	43078267	43078267	+	Intron	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC14A2	8170	broad.mit.edu	37	18	43132622	43132622	+	Intron	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC14A2	8170	broad.mit.edu	37	18	43170841	43170841	+	Intron	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC17A6	57084	broad.mit.edu	37	11	22381079	22381079	+	Intron	SNP	T	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC17A8	246213	broad.mit.edu	37	12	100811776	100811776	+	Intron	SNP	C	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC17A9	63910	broad.mit.edu	37	20	61598073	61598073	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC18A1	6570	broad.mit.edu	37	8	20029103	20029103	+	Intron	SNP	G	T	T	rs6987705	by1000genomes	TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC22A23	63027	broad.mit.edu	37	6	3413548	3413548	+	Intron	SNP	G	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC24A2	25769	broad.mit.edu	37	9	19743169	19743169	+	Intron	SNP	T	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC24A4	123041	broad.mit.edu	37	14	92867706	92867706	+	Intron	SNP	T	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC25A21	89874	broad.mit.edu	37	14	37310569	37310569	+	Intron	SNP	G	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC26A7	115111	broad.mit.edu	37	8	92301722	92301722	+	Intron	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC26A8	116369	broad.mit.edu	37	6	35919323	35919323	+	Intron	SNP	G	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC27A1	376497	broad.mit.edu	37	19	17608205	17608205	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC2A13	114134	broad.mit.edu	37	12	40289663	40289663	+	Intron	SNP	T	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC2A13	114134	broad.mit.edu	37	12	40422403	40422403	+	Intron	SNP	T	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC30A10	55532	broad.mit.edu	37	1	220089058	220089058	+	Silent	SNP	C	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC35D1	23169	broad.mit.edu	37	1	67513052	67513052	+	Splice_Site	SNP	T	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC35F1	222553	broad.mit.edu	37	6	118257384	118257384	+	Intron	SNP	T	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC36A4	120103	broad.mit.edu	37	11	92918595	92918595	+	Intron	SNP	A	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC38A6	145389	broad.mit.edu	37	14	61451575	61451575	+	Intron	SNP	A	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC38A9	153129	broad.mit.edu	37	5	54960566	54960566	+	Missense_Mutation	SNP	C	T	T	rs141328492		TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC38A9	153129	broad.mit.edu	37	5	54968640	54968640	+	Intron	SNP	T	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC39A12	221074	broad.mit.edu	37	10	18259031	18259031	+	Intron	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC39A12	221074	broad.mit.edu	37	10	18331872	18331872	+	3'UTR	SNP	T	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC4A10	57282	broad.mit.edu	37	2	162652366	162652366	+	Intron	SNP	C	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC5A4	6527	broad.mit.edu	37	22	32651169	32651169	+	Intron	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC6A5	9152	broad.mit.edu	37	11	20645014	20645014	+	Intron	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC8A1	6546	broad.mit.edu	37	2	40656261	40656261	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC9A11	284525	broad.mit.edu	37	1	173517436	173517436	+	Intron	SNP	T	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC9A9	285195	broad.mit.edu	37	3	142997326	142997326	+	Intron	SNP	T	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC9A9	285195	broad.mit.edu	37	3	143090914	143090914	+	Intron	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLCO1B1	10599	broad.mit.edu	37	12	21329791	21329791	+	Missense_Mutation	SNP	T	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLCO1B3	28234	broad.mit.edu	37	12	21057585	21057585	+	Intron	SNP	T	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLCO1C1	53919	broad.mit.edu	37	12	20894177	20894177	+	Intron	SNP	A	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLCO3A1	28232	broad.mit.edu	37	15	92443605	92443605	+	Intron	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLCO6A1	133482	broad.mit.edu	37	5	101810596	101810596	+	Intron	SNP	C	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLIT1	6585	broad.mit.edu	37	10	98900038	98900038	+	Intron	SNP	A	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLIT2	9353	broad.mit.edu	37	4	20543212	20543212	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLIT3	6586	broad.mit.edu	37	5	168620362	168620362	+	Intron	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLIT3	6586	broad.mit.edu	37	5	168678599	168678599	+	Intron	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLITRK1	114798	broad.mit.edu	37	13	84454840	84454840	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLITRK3	22865	broad.mit.edu	37	3	164905177	164905177	+	3'UTR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMOC1	64093	broad.mit.edu	37	14	70484219	70484219	+	Intron	SNP	C	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMYD3	64754	broad.mit.edu	37	1	246594925	246594925	+	Intron	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNAP47	116841	broad.mit.edu	37	1	227929582	227929582	+	Intron	SNP	A	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNCG	6623	broad.mit.edu	37	10	88719864	88719864	+	Silent	SNP	C	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNORD115-16	100033454	broad.mit.edu	37	15	25442626	25442626	+	5'Flank	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNORD116-4	100033416	broad.mit.edu	37	15	25310396	25310396	+	Intron	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNRPN	6638	broad.mit.edu	37	15	25179384	25179384	+	Intron	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNRPN	6638	broad.mit.edu	37	15	25213218	25213218	+	5'UTR	SNP	A	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNTG1	54212	broad.mit.edu	37	8	51557425	51557425	+	Intron	SNP	T	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNTG1	54212	broad.mit.edu	37	8	51621609	51621609	+	Intron	SNP	A	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNTG1	54212	broad.mit.edu	37	8	51700113	51700113	+	Intron	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNTG2	54221	broad.mit.edu	37	2	1285284	1285284	+	Intron	SNP	G	A	A	rs113659235		TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNX13	23161	broad.mit.edu	37	7	17838901	17838901	+	Intron	SNP	T	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNX32	254122	broad.mit.edu	37	11	65618421	65618421	+	Intron	SNP	T	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNX5	27131	broad.mit.edu	37	20	17929496	17929496	+	Intron	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SORBS2	8470	broad.mit.edu	37	4	186859995	186859995	+	Intron	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SORCS1	114815	broad.mit.edu	37	10	108363620	108363620	+	Intron	SNP	C	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SORCS1	114815	broad.mit.edu	37	10	108373737	108373737	+	Intron	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SORCS1	114815	broad.mit.edu	37	10	108377961	108377961	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SORCS3	22986	broad.mit.edu	37	10	106847822	106847822	+	Intron	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SORCS3	22986	broad.mit.edu	37	10	106916581	106916581	+	Intron	SNP	C	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SORCS3	22986	broad.mit.edu	37	10	106916757	106916757	+	Intron	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SORCS3	22986	broad.mit.edu	37	10	106989540	106989540	+	Intron	SNP	C	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SORCS3	22986	broad.mit.edu	37	10	107021946	107021946	+	Intron	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SOX14	8403	broad.mit.edu	37	3	137483968	137483968	+	Silent	SNP	C	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SOX3	6658	broad.mit.edu	37	X	139586819	139586819	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SOX5	6660	broad.mit.edu	37	12	24179416	24179416	+	Intron	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPAG11A	653423	broad.mit.edu	37	8	7721265	7721265	+	3'UTR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPAG16	79582	broad.mit.edu	37	2	214208401	214208401	+	Intron	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPAG16	79582	broad.mit.edu	37	2	214878756	214878756	+	Silent	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPAG17	200162	broad.mit.edu	37	1	118530785	118530785	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPAM1	6677	broad.mit.edu	37	7	123593580	123593580	+	5'UTR	SNP	G	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPANXN3	139067	broad.mit.edu	37	X	142598784	142598784	+	Intron	SNP	C	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPARC	6678	broad.mit.edu	37	5	151049415	151049415	+	Intron	SNP	C	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPATA17	128153	broad.mit.edu	37	1	217822389	217822389	+	Intron	SNP	A	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPATA6	54558	broad.mit.edu	37	1	48791147	48791147	+	Intron	SNP	G	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPATS1	221409	broad.mit.edu	37	6	44329629	44329629	+	Silent	SNP	C	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPEN	23013	broad.mit.edu	37	1	16255645	16255645	+	Silent	SNP	A	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPOCK1	6695	broad.mit.edu	37	5	136426706	136426706	+	Intron	SNP	G	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPOCK1	6695	broad.mit.edu	37	5	136816791	136816791	+	Intron	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPOCK3	50859	broad.mit.edu	37	4	167810365	167810365	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPOCK3	50859	broad.mit.edu	37	4	167919624	167919624	+	Intron	SNP	T	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPTA1	6708	broad.mit.edu	37	1	158623138	158623138	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPTBN4	57731	broad.mit.edu	37	19	41026139	41026139	+	Intron	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SRCAP	10847	broad.mit.edu	37	16	30722385	30722385	+	Nonsense_Mutation	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SSBP3	23648	broad.mit.edu	37	1	54759284	54759284	+	Intron	SNP	C	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ST18	9705	broad.mit.edu	37	8	53124626	53124626	+	Intron	SNP	G	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ST18	9705	broad.mit.edu	37	8	53243101	53243101	+	Intron	DEL	C	-	-			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ST3GAL4	6484	broad.mit.edu	37	11	126284072	126284072	+	3'UTR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ST6GAL1	6480	broad.mit.edu	37	3	186792136	186792136	+	Intron	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ST6GALNAC3	256435	broad.mit.edu	37	1	76951632	76951632	+	Intron	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STAB2	55576	broad.mit.edu	37	12	104086627	104086627	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STAG1	10274	broad.mit.edu	37	3	136196307	136196307	+	Intron	SNP	A	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STAP1	26228	broad.mit.edu	37	4	68442838	68442838	+	Intron	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STARD7	56910	broad.mit.edu	37	2	96859182	96859182	+	Intron	SNP	T	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STAU2	27067	broad.mit.edu	37	8	74601357	74601357	+	Intron	SNP	A	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STIM1	6786	broad.mit.edu	37	11	4091385	4091385	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STL	7955	broad.mit.edu	37	6	125233364	125233364	+	RNA	SNP	T	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STON2	85439	broad.mit.edu	37	14	81850484	81850484	+	Intron	SNP	T	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STOX1	219736	broad.mit.edu	37	10	70645139	70645139	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STOX2	56977	broad.mit.edu	37	4	184910653	184910653	+	Intron	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STX11	8676	broad.mit.edu	37	6	144507902	144507902	+	Silent	SNP	A	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STX8	9482	broad.mit.edu	37	17	9181556	9181556	+	Intron	SNP	C	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STXBP4	252983	broad.mit.edu	37	17	53150205	53150205	+	Intron	SNP	A	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STXBP5L	9515	broad.mit.edu	37	3	120899706	120899706	+	Intron	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SUCLG2	8801	broad.mit.edu	37	3	67621907	67621907	+	Intron	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SULF1	23213	broad.mit.edu	37	8	70540227	70540227	+	Intron	SNP	G	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SULT4A1	25830	broad.mit.edu	37	22	44222020	44222020	+	Intron	SNP	G	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SUSD1	64420	broad.mit.edu	37	9	114849523	114849523	+	Intron	SNP	C	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SV2C	22987	broad.mit.edu	37	5	75559212	75559212	+	Intron	SNP	G	T	T	rs144299605	by1000genomes	TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SVOP	55530	broad.mit.edu	37	12	109316781	109316781	+	Intron	SNP	G	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYNE1	23345	broad.mit.edu	37	6	152534649	152534649	+	Intron	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYNE1	23345	broad.mit.edu	37	6	152716805	152716805	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYPL2	284612	broad.mit.edu	37	1	110018429	110018429	+	Intron	SNP	G	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYT1	6857	broad.mit.edu	37	12	79508647	79508647	+	Intron	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYT4	6860	broad.mit.edu	37	18	40850781	40850781	+	Intron	SNP	C	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYT5	6861	broad.mit.edu	37	19	55685808	55685808	+	Intron	SNP	C	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAF4	6874	broad.mit.edu	37	20	60578330	60578335	+	Splice_Site	DEL	ACTACA	-	-			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TARS2	80222	broad.mit.edu	37	1	150463816	150463816	+	Intron	SNP	C	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBC1D4	9882	broad.mit.edu	37	13	75947825	75947825	+	Intron	SNP	T	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBC1D8	11138	broad.mit.edu	37	2	101706459	101706459	+	Intron	SNP	A	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBC1D9B	23061	broad.mit.edu	37	5	179292811	179292811	+	Intron	SNP	A	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBL1Y	90665	broad.mit.edu	37	Y	6812035	6812035	+	Intron	SNP	A	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBXAS1	6916	broad.mit.edu	37	7	139525083	139525083	+	Intron	SNP	C	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TCF4	6925	broad.mit.edu	37	18	53107772	53107772	+	Intron	SNP	C	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TCL1A	8115	broad.mit.edu	37	14	96178971	96178972	+	Intron	DNP	GG	TT	TT			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TECPR2	9895	broad.mit.edu	37	14	102842586	102842586	+	Intron	SNP	C	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TERT	7015	broad.mit.edu	37	5	1264756	1264756	+	Intron	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TEX101	83639	broad.mit.edu	37	19	43922000	43922000	+	Intron	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TEX101	83639	broad.mit.edu	37	19	43922303	43922303	+	Intron	SNP	C	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TEX14	56155	broad.mit.edu	37	17	56700456	56700456	+	Intron	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TEX15	56154	broad.mit.edu	37	8	30699628	30699628	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TFAP2B	7021	broad.mit.edu	37	6	50808085	50808085	+	Intron	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TF	7018	broad.mit.edu	37	3	133472219	133472219	+	Intron	SNP	A	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TGIF2LY	90655	broad.mit.edu	37	Y	3448045	3448045	+	3'UTR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TGM7	116179	broad.mit.edu	37	15	43571883	43571883	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TG	7038	broad.mit.edu	37	8	133905132	133905132	+	Intron	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TH1L	51497	broad.mit.edu	37	20	57564958	57564958	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
THSD1P1	374500	broad.mit.edu	37	13	52787979	52787979	+	Intron	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
THSD7A	221981	broad.mit.edu	37	7	11452302	11452302	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
THSD7A	221981	broad.mit.edu	37	7	11486087	11486087	+	Intron	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
THSD7A	221981	broad.mit.edu	37	7	11629893	11629893	+	Intron	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
THSD7A	221981	broad.mit.edu	37	7	11857830	11857830	+	Intron	SNP	C	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
THSD7B	80731	broad.mit.edu	37	2	137750930	137750930	+	Intron	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
THSD7B	80731	broad.mit.edu	37	2	137964805	137964805	+	Intron	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TIAL1	7073	broad.mit.edu	37	10	121341671	121341671	+	Intron	SNP	G	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TIAM1	7074	broad.mit.edu	37	21	32554806	32554806	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TIMD4	91937	broad.mit.edu	37	5	156346442	156346442	+	3'UTR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TLN2	83660	broad.mit.edu	37	15	63014830	63014830	+	Intron	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TLN2	83660	broad.mit.edu	37	15	63088553	63088553	+	Intron	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TLR10	81793	broad.mit.edu	37	4	38783509	38783509	+	Intron	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TLR4	7099	broad.mit.edu	37	9	120464669	120464669	+	5'Flank	SNP	C	T	T	rs80066786	by1000genomes	TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TLR4	7099	broad.mit.edu	37	9	120474728	120474728	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TLR4	7099	broad.mit.edu	37	9	120477085	120477085	+	3'UTR	SNP	T	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TM9SF3	56889	broad.mit.edu	37	10	98290160	98290160	+	Intron	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMC2	117532	broad.mit.edu	37	20	2597714	2597715	+	Intron	DNP	CC	AA	AA			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMCO5A	145942	broad.mit.edu	37	15	38225074	38225074	+	5'Flank	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM117	84216	broad.mit.edu	37	12	44608095	44608095	+	Intron	SNP	G	T	T	rs144986199	by1000genomes	TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM117	84216	broad.mit.edu	37	12	44645922	44645922	+	Intron	SNP	T	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM117	84216	broad.mit.edu	37	12	44781918	44781918	+	Frame_Shift_Del	DEL	G	-	-	rs150882895		TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM132B	114795	broad.mit.edu	37	12	126135489	126135489	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM132D	121256	broad.mit.edu	37	12	130121533	130121533	+	Intron	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM145	284339	broad.mit.edu	37	19	42824382	42824382	+	Intron	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM150B	284417	broad.mit.edu	37	19	55831595	55831595	+	Intron	SNP	G	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM195	392636	broad.mit.edu	37	7	15271378	15271378	+	Intron	SNP	A	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM195	392636	broad.mit.edu	37	7	15526594	15526594	+	Intron	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM232	642987	broad.mit.edu	37	5	109637712	109637712	+	Intron	SNP	C	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM232	642987	broad.mit.edu	37	5	109935434	109935434	+	Intron	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM39A	55254	broad.mit.edu	37	3	119180915	119180915	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM72	643236	broad.mit.edu	37	10	45430531	45430532	+	Frame_Shift_Ins	INS	-	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM87A	25963	broad.mit.edu	37	15	42525442	42525442	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMPRSS11D	9407	broad.mit.edu	37	4	68735590	68735590	+	Intron	SNP	A	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMTC2	160335	broad.mit.edu	37	12	83286349	83286349	+	Intron	SNP	G	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMX3	54495	broad.mit.edu	37	18	66378620	66378620	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMX3	54495	broad.mit.edu	37	18	66378673	66378673	+	Intron	SNP	T	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNNI3K	51086	broad.mit.edu	37	1	74958127	74958127	+	Intron	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNN	63923	broad.mit.edu	37	1	175054751	175054751	+	Intron	SNP	C	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNR	7143	broad.mit.edu	37	1	175365585	175365585	+	Intron	SNP	C	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNR	7143	broad.mit.edu	37	1	175372851	175372852	+	Intron	DNP	CA	AG	AG			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNR	7143	broad.mit.edu	37	1	175652148	175652148	+	Intron	SNP	A	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNR	7143	broad.mit.edu	37	1	175674842	175674842	+	Intron	SNP	G	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNS3	64759	broad.mit.edu	37	7	47390403	47390403	+	Intron	SNP	T	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TOX2	84969	broad.mit.edu	37	20	42546011	42546011	+	Intron	SNP	C	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPSB2	64499	broad.mit.edu	37	16	1278579	1278579	+	3'UTR	SNP	T	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPTE	7179	broad.mit.edu	37	21	10917291	10917291	+	Intron	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPTE	7179	broad.mit.edu	37	21	10971774	10971774	+	Intron	SNP	A	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRAK2	66008	broad.mit.edu	37	2	202277300	202277300	+	Intron	SNP	C	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRAPPC10	7109	broad.mit.edu	37	21	45509756	45509756	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRDN	10345	broad.mit.edu	37	6	123734394	123734394	+	Intron	SNP	A	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRHDE	29953	broad.mit.edu	37	12	72680485	72680485	+	Silent	SNP	G	T	T	rs143921572	by1000genomes	TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRHDE	29953	broad.mit.edu	37	12	72954072	72954072	+	Intron	SNP	T	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRHR	7201	broad.mit.edu	37	8	110099765	110099765	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIM15	89870	broad.mit.edu	37	6	30138770	30138770	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIM48	79097	broad.mit.edu	37	11	55032720	55032720	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIM55	84675	broad.mit.edu	37	8	67061742	67061742	+	Intron	SNP	A	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPA1	8989	broad.mit.edu	37	8	72973926	72973926	+	Nonsense_Mutation	SNP	G	T	T	rs141174965		TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPC3	7222	broad.mit.edu	37	4	122869574	122869574	+	Intron	SNP	T	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPC5	7224	broad.mit.edu	37	X	111312991	111312991	+	Intron	SNP	C	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPM1	4308	broad.mit.edu	37	15	31293996	31293996	+	3'UTR	DEL	A	-	-			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPM1	4308	broad.mit.edu	37	15	31327786	31327786	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPV6	55503	broad.mit.edu	37	7	142574389	142574389	+	Intron	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRYX3	136541	broad.mit.edu	37	7	141957462	141957462	+	Intron	SNP	A	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TSHR	7253	broad.mit.edu	37	14	81441168	81441168	+	Intron	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TSHR	7253	broad.mit.edu	37	14	81462881	81462881	+	Intron	SNP	T	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TSHZ1	10194	broad.mit.edu	37	18	73000431	73000431	+	Silent	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TSHZ2	128553	broad.mit.edu	37	20	51621236	51621236	+	Intron	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TSHZ2	128553	broad.mit.edu	37	20	52024815	52024815	+	Intron	SNP	G	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TSPAN11	441631	broad.mit.edu	37	12	31076718	31076718	+	5'Flank	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TSPY1	7258	broad.mit.edu	37	Y	9307492	9307492	+	Intron	SNP	A	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTC28	23331	broad.mit.edu	37	22	28558442	28558442	+	Intron	SNP	T	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTF1	7270	broad.mit.edu	37	9	135252745	135252745	+	Intron	SNP	T	C	C	rs140561030	by1000genomes	TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTF1	7270	broad.mit.edu	37	9	135252752	135252752	+	Intron	SNP	G	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179475105	179475105	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179500555	179500555	+	Intron	SNP	T	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTYH3	80727	broad.mit.edu	37	7	2698506	2698506	+	Intron	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBASH3A	53347	broad.mit.edu	37	21	43826369	43826369	+	Intron	SNP	C	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBE2T	29089	broad.mit.edu	37	1	202300911	202300911	+	3'UTR	SNP	T	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBE3A	7337	broad.mit.edu	37	15	25585397	25585397	+	Intron	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UGGT2	55757	broad.mit.edu	37	13	96635759	96635759	+	Intron	SNP	T	A	A	rs143489275	by1000genomes	TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UGT2B10	7365	broad.mit.edu	37	4	69885723	69885723	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UGT3A1	133688	broad.mit.edu	37	5	35991213	35991213	+	Intron	SNP	C	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ULK4	54986	broad.mit.edu	37	3	41878184	41878184	+	Intron	SNP	T	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UNC13C	440279	broad.mit.edu	37	15	54307916	54307916	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UNC13C	440279	broad.mit.edu	37	15	54708083	54708083	+	Intron	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UNC5D	137970	broad.mit.edu	37	8	35504028	35504028	+	Intron	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UNC5D	137970	broad.mit.edu	37	8	35542001	35542001	+	Intron	SNP	T	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UROC1	131669	broad.mit.edu	37	3	126226902	126226902	+	Nonsense_Mutation	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USH2A	7399	broad.mit.edu	37	1	216270756	216270756	+	Intron	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USH2A	7399	broad.mit.edu	37	1	216517893	216517893	+	Intron	SNP	A	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USH2A	7399	broad.mit.edu	37	1	216544417	216544417	+	Intron	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP13	8975	broad.mit.edu	37	3	179481954	179481954	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP18	11274	broad.mit.edu	37	22	18649936	18649936	+	Intron	SNP	G	A	A	rs112286677	by1000genomes	TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP29	57663	broad.mit.edu	37	19	57641420	57641420	+	Silent	SNP	C	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP35	57558	broad.mit.edu	37	11	77907354	77907354	+	Silent	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP37	57695	broad.mit.edu	37	2	219417703	219417703	+	Intron	SNP	A	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP40	55230	broad.mit.edu	37	2	234462925	234462925	+	Intron	SNP	T	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UTY	7404	broad.mit.edu	37	Y	15471024	15471024	+	Intron	SNP	G	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UXS1	80146	broad.mit.edu	37	2	106721105	106721105	+	Intron	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	102458155	102458155	+	IGR	SNP	C	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	108219714	108219714	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	109138086	109138086	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	10920812	10920812	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	109422845	109422845	+	IGR	SNP	G	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	109454183	109454183	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	109603315	109603315	+	IGR	SNP	A	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	110387136	110387136	+	IGR	SNP	C	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	110460069	110460069	+	IGR	SNP	A	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	111318905	111318905	+	IGR	SNP	A	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	117763399	117763399	+	IGR	SNP	G	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	117791266	117791266	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	119414270	119414270	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	119539536	119539536	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	131538	131539	+	IGR	DNP	GG	TT	TT			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	131930037	131930037	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	132367498	132367498	+	IGR	SNP	G	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	132395276	132395276	+	IGR	SNP	T	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	132532598	132532598	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	133175510	133175510	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	133185137	133185137	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	16353050	16353050	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	19722296	19722296	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	1987575	1987575	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	2187795	2187795	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	26172857	26172857	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	2667309	2667309	+	IGR	SNP	C	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	29140389	29140389	+	IGR	SNP	T	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	30246381	30246381	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	30273570	30273570	+	IGR	SNP	C	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	31511344	31511344	+	IGR	SNP	C	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	31823265	31823265	+	IGR	SNP	T	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	37696047	37696048	+	IGR	DNP	CC	GA	GA			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	37853381	37853381	+	IGR	SNP	A	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	38210780	38210780	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	4227165	4227165	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	42638111	42638111	+	IGR	SNP	T	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	42640519	42640519	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	42648212	42648212	+	IGR	SNP	C	A	A	rs80138688		TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	42688029	42688029	+	IGR	DEL	T	-	-			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	43201982	43201982	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	44831313	44831313	+	IGR	SNP	T	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	48722725	48722725	+	IGR	SNP	T	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	54611642	54611642	+	IGR	SNP	C	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	54618724	54618724	+	IGR	SNP	T	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	58068504	58068504	+	IGR	SNP	C	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	58225867	58225867	+	IGR	SNP	C	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	59535374	59535374	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	65856493	65856493	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	65901323	65901323	+	IGR	SNP	A	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	67281943	67281943	+	IGR	SNP	T	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	74751280	74751280	+	IGR	SNP	T	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	78398447	78398447	+	IGR	SNP	T	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	78474941	78474941	+	IGR	SNP	T	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	79955928	79955928	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	82940079	82940079	+	IGR	SNP	A	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	85067596	85067596	+	IGR	SNP	T	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	85643629	85643629	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	85785120	85785120	+	IGR	SNP	T	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	86936230	86936230	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	8900688	8900688	+	IGR	SNP	C	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	9051652	9051652	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	92500379	92500379	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	101183136	101183136	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	102510162	102510162	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	103597671	103597671	+	IGR	SNP	C	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	107047514	107047514	+	IGR	DEL	G	-	-			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	109366787	109366787	+	IGR	SNP	C	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	109921627	109921627	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	112419585	112419585	+	IGR	SNP	A	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	115455724	115455725	+	IGR	DNP	GT	AA	AA			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	115972426	115972426	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	116032196	116032196	+	IGR	SNP	G	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	116366076	116366076	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	121544575	121544575	+	IGR	SNP	G	A	A	rs79452793	byFrequency;by1000genomes	TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	121639062	121639062	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	121667207	121667207	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	123180725	123180725	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	123795278	123795278	+	IGR	DEL	G	-	-			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	130669331	130669331	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	130959397	130959397	+	IGR	SNP	T	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	130981803	130981803	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	131051114	131051114	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	131161057	131161057	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	131165231	131165231	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	132255550	132255550	+	IGR	SNP	C	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	133545064	133545064	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	133580621	133580621	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	133678069	133678069	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	134614719	134614719	+	IGR	SNP	G	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	134737894	134737894	+	IGR	SNP	G	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	134794619	134794619	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	13774813	13774813	+	IGR	SNP	C	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	13942324	13942324	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	23345060	23345060	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	29092483	29092483	+	IGR	SNP	G	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	29208990	29208990	+	IGR	SNP	C	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	29849520	29849520	+	IGR	SNP	A	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	30175767	30175768	+	IGR	DNP	GG	TT	TT			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	30201714	30201714	+	IGR	SNP	A	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	37386933	37386933	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	37398513	37398513	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	38787664	38787664	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	39088897	39088897	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	41552399	41552399	+	IGR	SNP	A	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	42191514	42191514	+	IGR	SNP	C	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	42252062	42252062	+	IGR	SNP	A	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	42884471	42884471	+	IGR	SNP	C	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	46273157	46273157	+	IGR	SNP	T	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	48970817	48970817	+	IGR	SNP	A	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	49076848	49076848	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	49371383	49371383	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	50003016	50003016	+	IGR	SNP	T	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	50397429	50397429	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	51451401	51451401	+	IGR	SNP	G	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	51453314	51453314	+	IGR	SNP	G	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	51458911	51458911	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	51523478	51523478	+	IGR	SNP	T	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	55271422	55271422	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	55573727	55573727	+	IGR	SNP	A	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	55771032	55771032	+	IGR	SNP	C	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	56268688	56268688	+	IGR	SNP	T	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	58047532	58047532	+	IGR	SNP	A	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	58080301	58080301	+	IGR	SNP	G	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	59088449	59088449	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	60348348	60348348	+	IGR	SNP	C	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	63702111	63702111	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	69659924	69659924	+	IGR	SNP	A	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	7171592	7171592	+	IGR	SNP	A	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	74782322	74782322	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	7846582	7846582	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	7947474	7947474	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	79649886	79649886	+	IGR	SNP	A	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	79887513	79887513	+	IGR	SNP	A	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	80813992	80813992	+	IGR	SNP	A	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	80910011	80910011	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	80965021	80965021	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	80995712	80995712	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	81543587	81543587	+	IGR	SNP	T	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	82197389	82197389	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	82394360	82394360	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	82456041	82456041	+	IGR	SNP	T	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	8314666	8314666	+	IGR	SNP	A	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	85836712	85836712	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	87114721	87114721	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	87236631	87236631	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	87272942	87272942	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	87485143	87485144	+	IGR	DNP	CC	AA	AA			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	88814943	88814943	+	IGR	SNP	C	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	89831969	89831969	+	IGR	SNP	G	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	90052480	90052480	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	90751805	90751805	+	IGR	SNP	G	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	91543073	91543073	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	97049091	97049091	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	97095951	97095951	+	IGR	SNP	C	A	A	rs138879259	by1000genomes	TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	97142913	97142913	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	97428161	97428161	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	98802976	98802976	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	101619219	101619219	+	IGR	SNP	T	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	103930563	103930563	+	IGR	SNP	C	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	105804709	105804709	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	106407187	106407187	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	107622836	107622836	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	108327161	108327161	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	108404196	108404196	+	IGR	SNP	G	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	108796003	108796003	+	IGR	SNP	C	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	114163814	114163814	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	114701166	114701166	+	IGR	SNP	T	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	114957998	114957998	+	IGR	SNP	C	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	115135663	115135663	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	115534365	115534365	+	IGR	SNP	C	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	115833201	115833201	+	IGR	SNP	A	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	115938423	115938423	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	115979785	115979785	+	IGR	SNP	C	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	116296005	116296005	+	IGR	SNP	A	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	119271356	119271356	+	IGR	SNP	C	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	126652218	126652218	+	IGR	SNP	C	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	126996216	126996216	+	IGR	SNP	A	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	127039667	127039667	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	127052000	127052000	+	IGR	SNP	C	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	127304254	127304254	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	127828653	127828653	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	127835794	127835794	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	127881431	127881431	+	IGR	SNP	G	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	128319988	128319988	+	IGR	SNP	T	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	128564624	128564624	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	130787857	130787857	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	13579794	13579794	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	16888407	16888407	+	IGR	SNP	G	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	17971771	17971771	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	19844292	19844292	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	20094538	20094538	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	28864592	28864592	+	IGR	SNP	G	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	29010201	29010201	+	IGR	SNP	T	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	30170194	30170194	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	3160700	3160700	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	32059031	32059031	+	IGR	SNP	G	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	33709275	33709275	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	33751293	33751293	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	34359220	34359220	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	34387442	34387442	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	34458212	34458212	+	IGR	SNP	C	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	34468605	34468605	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	38007978	38007978	+	IGR	SNP	A	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	38511972	38511972	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	39403443	39403443	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	40905319	40905319	+	IGR	SNP	A	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	42157941	42157941	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	42158671	42158671	+	IGR	SNP	G	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	42159414	42159414	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	42159416	42159416	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	42195852	42195852	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	42288608	42288608	+	IGR	SNP	C	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	42305933	42305933	+	IGR	SNP	C	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	43095682	43095682	+	IGR	SNP	C	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	43095704	43095704	+	IGR	SNP	G	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	43488685	43488685	+	IGR	SNP	C	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	43489304	43489304	+	IGR	SNP	C	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	43516612	43516612	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	43565688	43565688	+	IGR	SNP	G	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	44012288	44012288	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	44800597	44800597	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	49270808	49270808	+	IGR	SNP	C	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	5311334	5311334	+	IGR	SNP	C	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	54205270	54205270	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	54212076	54212076	+	IGR	SNP	A	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	55405927	55405927	+	IGR	SNP	G	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	5663938	5663938	+	IGR	SNP	G	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	58264327	58264327	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	58789082	58789082	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	59414508	59414508	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	60510819	60510819	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	60629931	60629931	+	IGR	SNP	G	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	61664206	61664206	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	61692039	61692039	+	IGR	SNP	G	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	61912198	61912198	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	62004436	62004436	+	IGR	SNP	C	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	63374699	63374699	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	63665114	63665114	+	IGR	SNP	C	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	65907555	65907555	+	IGR	SNP	C	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	67734246	67734246	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	72432346	72432346	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	72481115	72481115	+	IGR	SNP	C	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	73372569	73372569	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	73373387	73373387	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	73641677	73641677	+	IGR	SNP	C	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	73871756	73871756	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	74513557	74513557	+	IGR	SNP	C	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	75025924	75025924	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	76395891	76395891	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	77136418	77136418	+	IGR	SNP	A	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	78116888	78116888	+	IGR	SNP	G	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	80649076	80649076	+	IGR	SNP	C	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	80796390	80796390	+	IGR	SNP	C	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	81170051	81170051	+	IGR	SNP	T	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	83545862	83545862	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	84170300	84170300	+	IGR	SNP	T	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	84543837	84543837	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	84614456	84614456	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	84649339	84649339	+	IGR	SNP	C	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	85360571	85360571	+	IGR	SNP	T	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	85389907	85389907	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	87333360	87333360	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	87414514	87414514	+	IGR	SNP	G	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	88066998	88066998	+	IGR	SNP	T	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	89022755	89022755	+	IGR	SNP	T	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	90529520	90529520	+	IGR	SNP	A	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	93518164	93518164	+	IGR	SNP	G	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	97994128	97994128	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	98332041	98332041	+	IGR	SNP	G	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	101596730	101596730	+	IGR	SNP	A	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	103639666	103639666	+	IGR	SNP	T	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	103852460	103852460	+	IGR	SNP	T	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	104388902	104388902	+	IGR	SNP	G	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	104645823	104645823	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	105087155	105087155	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	107472794	107472794	+	IGR	SNP	C	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	107623733	107623733	+	IGR	SNP	G	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	111728695	111728695	+	IGR	SNP	T	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	19468931	19468931	+	IGR	SNP	A	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	19526982	19526982	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	20934200	20934200	+	IGR	SNP	C	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	31421829	31421829	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	32077837	32077837	+	IGR	SNP	T	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	37055208	37055208	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	39760074	39760074	+	IGR	SNP	A	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	43274619	43274619	+	IGR	SNP	G	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	48109882	48109882	+	IGR	SNP	T	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	48226498	48226498	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	49212957	49212957	+	IGR	SNP	G	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	52943822	52943822	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	53676582	53676582	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	54359381	54359381	+	IGR	SNP	C	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	54446852	54446852	+	IGR	SNP	T	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	54528901	54528901	+	IGR	SNP	C	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	54860944	54860944	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	56574318	56574318	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	56601663	56601663	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	57917869	57917869	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	58546561	58546561	+	IGR	SNP	C	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	58546712	58546712	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	58579673	58579673	+	IGR	SNP	T	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	61158378	61158378	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	63182828	63182828	+	IGR	SNP	G	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	63544000	63544000	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	63908056	63908056	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	64367733	64367733	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	64709091	64709091	+	IGR	SNP	C	A	A	rs148959033	by1000genomes	TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	65939775	65939775	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	66160288	66160288	+	IGR	SNP	T	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	67841093	67841093	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	68283096	68283096	+	IGR	SNP	T	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	68937850	68937850	+	IGR	SNP	G	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	69473643	69473643	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	70241847	70241847	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	71265831	71265831	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	71795340	71795340	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	71835878	71835878	+	IGR	SNP	C	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	73238599	73238599	+	IGR	SNP	A	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	73278341	73278341	+	IGR	SNP	T	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	74030010	74030010	+	IGR	SNP	T	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	74030021	74030021	+	IGR	SNP	G	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	75607894	75607894	+	IGR	SNP	G	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	76748980	76748980	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	77090519	77090519	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	81900751	81900751	+	IGR	SNP	G	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	82631271	82631271	+	IGR	SNP	G	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	83706380	83706380	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	85384483	85384483	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	87229417	87229417	+	IGR	SNP	T	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	89959621	89959621	+	IGR	SNP	A	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	90149653	90149653	+	IGR	DEL	G	-	-			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	91042963	91042964	+	IGR	DNP	CC	AG	AG			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	19476470	19476470	+	IGR	SNP	C	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	20100735	20100735	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	20137626	20137626	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	20137696	20137696	+	IGR	DEL	G	-	-			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	20286620	20286620	+	IGR	SNP	T	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	20641863	20641863	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	21132064	21132064	+	IGR	SNP	G	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	25237086	25237086	+	IGR	SNP	C	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	25964174	25964174	+	IGR	SNP	G	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	26098421	26098421	+	IGR	SNP	G	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	26098486	26098486	+	IGR	SNP	G	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	27255181	27255181	+	IGR	SNP	T	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	27474343	27474343	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	27727650	27727650	+	IGR	SNP	G	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	27728516	27728516	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	28937273	28937273	+	IGR	SNP	C	A	A	rs113743488		TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	30748064	30748064	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	30932119	30932119	+	IGR	SNP	C	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	34563154	34563154	+	IGR	SNP	A	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	38568822	38568822	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	39123391	39123391	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	40324593	40324593	+	IGR	SNP	T	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	40471447	40471447	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	40577038	40577038	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	40982494	40982494	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	41244387	41244387	+	IGR	SNP	A	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	41420662	41420662	+	IGR	SNP	T	C	C	rs139402484	by1000genomes	TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	42009813	42009813	+	IGR	SNP	G	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	42614051	42614051	+	IGR	SNP	A	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	42935480	42935480	+	IGR	SNP	T	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	43034444	43034444	+	IGR	SNP	A	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	43064412	43064412	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	43122473	43122473	+	IGR	SNP	G	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	43130827	43130827	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	43140423	43140423	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	43464976	43464976	+	IGR	SNP	C	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	44477462	44477462	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	44495165	44495165	+	IGR	SNP	A	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	44731659	44731659	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	44764129	44764129	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	46662332	46662332	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	48229234	48229234	+	IGR	SNP	T	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	48531453	48531453	+	IGR	SNP	C	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	48739383	48739383	+	IGR	SNP	C	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	48767011	48767011	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	48838269	48838269	+	IGR	SNP	T	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	48958707	48958707	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	48974129	48974129	+	IGR	SNP	G	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	49043434	49043434	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	49099643	49099643	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	49174635	49174635	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	49191117	49191117	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	49937225	49937225	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	52223830	52223830	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	54305715	54305715	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	54378586	54378586	+	IGR	SNP	G	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	58300289	58300289	+	IGR	SNP	G	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	59427319	59427319	+	IGR	SNP	T	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	59458687	59458687	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	59566266	59566266	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	62692124	62692124	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	66412724	66412724	+	IGR	SNP	C	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	66864934	66864934	+	IGR	SNP	T	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	73040150	73040150	+	IGR	SNP	C	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	74943336	74943336	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	75313946	75313946	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	80335956	80335956	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	80362972	80362972	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	80396150	80396150	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	80404979	80404979	+	IGR	SNP	C	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	82149174	82149175	+	IGR	DNP	GC	TT	TT			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	82343847	82343847	+	IGR	SNP	G	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	82378939	82378939	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	82433309	82433309	+	IGR	SNP	A	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	82570970	82570970	+	IGR	SNP	T	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	82886728	82886728	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	82929634	82929634	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	82930181	82930181	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	83824640	83824640	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	83919059	83919059	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	85548293	85548293	+	IGR	SNP	G	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	86458371	86458371	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	87316910	87316910	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	87504978	87504978	+	IGR	SNP	T	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	87777536	87777536	+	IGR	SNP	G	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	87916779	87916779	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	87993991	87993991	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	87997153	87997153	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	88237155	88237155	+	IGR	SNP	C	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	88279535	88279535	+	IGR	SNP	G	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	91328768	91328768	+	IGR	SNP	C	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	96102695	96102695	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	96332691	96332691	+	IGR	SNP	C	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	97159481	97159481	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	97632989	97632989	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	97646868	97646868	+	IGR	SNP	A	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	97794038	97794038	+	IGR	SNP	T	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	97819568	97819568	+	IGR	DEL	G	-	-			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	97964692	97964692	+	IGR	SNP	T	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	98035826	98035826	+	IGR	SNP	C	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	98332236	98332236	+	IGR	SNP	C	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	98360077	98360077	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	98560951	98560951	+	IGR	SNP	T	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	98753842	98753842	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	98839307	98839307	+	IGR	SNP	T	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	99034840	99034840	+	IGR	SNP	T	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	99418518	99418518	+	IGR	SNP	C	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	20109512	20109512	+	IGR	SNP	A	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	20127123	20127123	+	IGR	SNP	T	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	20413167	20413167	+	IGR	SNP	T	C	C	rs147385376	by1000genomes	TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	20427490	20427490	+	IGR	SNP	A	G	G	rs113600042		TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	20586320	20586320	+	IGR	SNP	G	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	21115432	21115432	+	IGR	SNP	T	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	21930236	21930236	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	22512335	22512335	+	IGR	SNP	T	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	24045193	24045193	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	24722319	24722319	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	26621151	26621151	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	26692225	26692225	+	IGR	SNP	A	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	34666291	34666291	+	IGR	SNP	G	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	34711100	34711100	+	IGR	SNP	T	G	G	rs113409354		TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	34962027	34962027	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	36487777	36487777	+	IGR	SNP	G	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	37610532	37610532	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	39817759	39817759	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	46579983	46579983	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	47402278	47402278	+	IGR	SNP	G	A	A	rs147288365	by1000genomes	TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	50113230	50113230	+	IGR	SNP	T	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	55011644	55011644	+	IGR	SNP	T	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	55044439	55044439	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	79961286	79961286	+	IGR	SNP	C	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	81900964	81900964	+	IGR	SNP	C	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	81901040	81901040	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	83965124	83965124	+	IGR	SNP	C	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	88302947	88302947	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	92285399	92285399	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	92840688	92840688	+	IGR	SNP	T	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	95795402	95795402	+	IGR	SNP	G	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	96957427	96957427	+	IGR	SNP	A	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	97693137	97693137	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	97946511	97946511	+	IGR	SNP	G	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	13553875	13553875	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	16973512	16973512	+	IGR	SNP	G	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	17828112	17828112	+	IGR	SNP	C	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	17928133	17928133	+	IGR	SNP	G	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	20253807	20253807	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	20596266	20596266	+	IGR	SNP	C	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	24377620	24377620	+	IGR	SNP	C	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	25033547	25033547	+	IGR	SNP	C	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	25461403	25461403	+	IGR	SNP	C	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	25529460	25529460	+	IGR	SNP	A	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	26155672	26155672	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	26229052	26229052	+	IGR	SNP	G	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	26446968	26446968	+	IGR	SNP	G	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	26699272	26699272	+	IGR	SNP	A	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	26781955	26781955	+	IGR	SNP	G	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	26812670	26812670	+	IGR	SNP	A	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	32369868	32369869	+	IGR	DNP	GG	TT	TT			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	32402222	32402222	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	32405626	32405626	+	IGR	SNP	T	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	32480789	32480789	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	32621550	32621550	+	IGR	SNP	G	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	32833225	32833225	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	32847337	32847337	+	IGR	SNP	T	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	33020936	33020936	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	33066644	33066644	+	IGR	SNP	C	T	T	rs77866070		TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	33373066	33373066	+	IGR	SNP	G	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	33404629	33404629	+	IGR	SNP	G	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	33550578	33550578	+	IGR	SNP	T	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	33596983	33596983	+	IGR	SNP	G	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	33713946	33713946	+	IGR	SNP	G	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	33720869	33720869	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	33720872	33720872	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	33983427	33983427	+	IGR	SNP	A	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	33993490	33993490	+	IGR	SNP	A	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	34754451	34754451	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	35069388	35069388	+	IGR	SNP	C	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	35265759	35265759	+	IGR	SNP	A	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	46406047	46406047	+	IGR	SNP	C	G	G	rs7184916		TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	47789899	47789899	+	IGR	SNP	T	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	48695648	48695648	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	49229347	49229347	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	51132003	51132003	+	IGR	SNP	T	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	51753401	51753401	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	51841083	51841083	+	IGR	SNP	T	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	51939425	51939425	+	IGR	SNP	T	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	5210065	5210065	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	5704294	5704294	+	IGR	SNP	T	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	60892503	60892503	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	61415958	61415958	+	IGR	SNP	T	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	61538285	61538285	+	IGR	SNP	G	C	C	rs150048285	by1000genomes	TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	62402450	62402450	+	IGR	SNP	T	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	62545349	62545349	+	IGR	SNP	T	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	62565381	62565381	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	62635003	62635003	+	IGR	SNP	A	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	62785841	62785841	+	IGR	SNP	A	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	63463727	63463727	+	IGR	SNP	A	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	63526828	63526828	+	IGR	SNP	C	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	64207340	64207340	+	IGR	SNP	C	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	64581637	64581637	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	65890581	65890581	+	IGR	SNP	A	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	65978309	65978309	+	IGR	SNP	A	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	66009747	66009747	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	73285701	73285701	+	IGR	SNP	G	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	73334013	73334013	+	IGR	SNP	G	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	76796574	76796574	+	IGR	SNP	A	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	77118531	77118531	+	IGR	SNP	C	G	G	rs112623088	by1000genomes	TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	79993469	79993469	+	IGR	SNP	C	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	8006941	8006941	+	IGR	SNP	G	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	82585480	82585480	+	IGR	SNP	C	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	8449209	8449209	+	IGR	SNP	G	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	85972016	85972016	+	IGR	SNP	C	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	9727682	9727682	+	IGR	SNP	C	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	10764963	10764963	+	IGR	SNP	C	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	14134669	14134669	+	IGR	SNP	G	A	A	rs116299272	by1000genomes	TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	14365775	14365775	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	20646747	20646747	+	IGR	SNP	G	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	22206614	22206614	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	22249820	22249820	+	IGR	SNP	A	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	25286275	25286275	+	IGR	SNP	C	A	A	rs9675014		TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	25292948	25292948	+	IGR	SNP	A	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	32486882	32486882	+	IGR	SNP	T	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	35053678	35053678	+	IGR	SNP	A	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	46791184	46791184	+	IGR	SNP	G	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	50562907	50562908	+	IGR	DNP	CC	AA	AA			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	51004255	51004255	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	51059862	51059862	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	51152883	51152883	+	IGR	SNP	G	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	51171901	51171901	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	51513042	51513042	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	52479188	52479188	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	53856766	53856766	+	IGR	SNP	G	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	5652250	5652250	+	IGR	SNP	T	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	63097215	63097215	+	IGR	SNP	C	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	68237418	68237418	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	69314308	69314308	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	69356323	69356323	+	IGR	SNP	A	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	70144233	70144233	+	IGR	SNP	G	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	13796777	13796777	+	IGR	SNP	A	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	14734687	14734687	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	14909612	14909613	+	IGR	DNP	GG	TT	TT			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	15208459	15208459	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	1825202	1825202	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	22299544	22299544	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	2265453	2265453	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	23322741	23322741	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	2491035	2491036	+	IGR	DNP	TG	CT	CT			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	25308032	25308032	+	IGR	SNP	A	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	25984902	25984902	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	26020620	26020620	+	IGR	SNP	T	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	26056996	26056996	+	IGR	SNP	C	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	27221599	27221599	+	IGR	SNP	G	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	28256460	28256460	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	28562772	28562772	+	IGR	SNP	T	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	30486842	30486842	+	IGR	SNP	A	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	35262424	35262424	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	36275102	36275102	+	IGR	SNP	G	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	37604384	37604384	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	37933582	37933582	+	IGR	SNP	A	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	38547313	38547313	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	39000742	39000742	+	IGR	SNP	C	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	39381890	39381890	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	39398187	39398187	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	39409417	39409417	+	IGR	SNP	A	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	39426802	39426802	+	IGR	SNP	G	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	39433084	39433084	+	IGR	SNP	T	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	40950864	40950864	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	41137855	41137855	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	41208091	41208091	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	41474867	41474867	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	41862987	41862987	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	41902052	41902052	+	IGR	SNP	T	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	45995081	45995081	+	IGR	SNP	G	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	4897442	4897442	+	IGR	SNP	A	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	49372948	49372948	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	49661475	49661475	+	IGR	SNP	C	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	54986170	54986170	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	55015189	55015189	+	IGR	SNP	G	A	A	rs147161846	by1000genomes	TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	57677994	57677994	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	60110438	60110438	+	IGR	SNP	A	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	61407627	61407627	+	IGR	SNP	T	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	62916686	62916686	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	64505298	64505298	+	IGR	SNP	T	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	65042491	65042491	+	IGR	DEL	C	-	-			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	65826835	65826835	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	66257260	66257260	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	66833457	66833457	+	IGR	SNP	G	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	68240955	68240955	+	IGR	SNP	C	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	68347606	68347606	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	68380469	68380469	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	69299171	69299171	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	70076115	70076115	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	71027795	71027795	+	IGR	SNP	C	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	71201668	71201668	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	71653945	71653945	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	74478735	74478735	+	IGR	SNP	C	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	75225496	75225496	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	14997910	14997910	+	IGR	SNP	T	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	20057921	20057921	+	IGR	DEL	G	-	-			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	22497189	22497189	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	22499054	22499054	+	IGR	SNP	T	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	24558741	24558741	+	IGR	SNP	T	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	28634623	28634624	+	IGR	DNP	GC	TT	TT			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	28822660	28822660	+	IGR	SNP	C	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	29237067	29237067	+	IGR	SNP	A	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	29540042	29540042	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	29644369	29644369	+	IGR	SNP	A	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	31325617	31325617	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	31458667	31458667	+	IGR	SNP	G	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	31550280	31550280	+	IGR	SNP	C	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	31575014	31575014	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	31606597	31606597	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	31614577	31614578	+	IGR	DNP	CC	AA	AA			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	32034469	32034469	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	32174428	32174428	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	36094139	36094139	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	36757867	36757867	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	38354040	38354040	+	IGR	SNP	T	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	39728480	39728480	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	40206086	40206086	+	IGR	SNP	T	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	43835426	43835426	+	IGR	SNP	C	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	46382867	46382867	+	IGR	SNP	G	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	53779245	53779245	+	IGR	SNP	C	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	53832871	53832871	+	IGR	SNP	C	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	54161302	54161302	+	IGR	SNP	T	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	57520486	57520486	+	IGR	SNP	C	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	9345785	9345786	+	IGR	INS	-	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	101266598	101266598	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	102173300	102173300	+	IGR	SNP	C	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	102722064	102722064	+	IGR	SNP	G	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	102722121	102722121	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	102792872	102792872	+	IGR	SNP	C	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	102840154	102840154	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	104385956	104385956	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	104764921	104764921	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	105261415	105261415	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	105926347	105926347	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	106192863	106192863	+	IGR	SNP	A	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	106434856	106434857	+	IGR	DNP	TG	CT	CT			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	106584930	106584930	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	106592538	106592538	+	IGR	SNP	A	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	106623677	106623677	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	107571067	107571067	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	108635592	108635592	+	IGR	SNP	G	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	111292862	111292862	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	111543973	111543973	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	112831595	112831595	+	IGR	SNP	T	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	116409215	116409219	+	IGR	DEL	CAAGC	-	-			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	117271090	117271090	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	118784817	118784817	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	120149678	120149678	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	12752726	12752726	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	142595574	142595574	+	IGR	SNP	T	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	147224827	147224827	+	IGR	SNP	G	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	148846924	148846924	+	IGR	SNP	A	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	148903642	148903642	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	150753124	150753124	+	IGR	SNP	T	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	153403452	153403452	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	158237262	158237262	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	161709011	161709011	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	163412156	163412156	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	163560231	163560231	+	IGR	SNP	G	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	163591304	163591304	+	IGR	SNP	A	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	163741690	163741690	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	164904780	164904780	+	IGR	SNP	T	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	165062876	165062876	+	IGR	SNP	T	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	165073305	165073305	+	IGR	SNP	G	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	165932240	165932240	+	IGR	SNP	A	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	173124498	173124498	+	IGR	SNP	G	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	181832639	181832639	+	IGR	SNP	T	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	182730671	182730671	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	186199585	186199585	+	IGR	SNP	T	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	186993903	186993903	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	187107575	187107575	+	IGR	SNP	G	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	187601568	187601568	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	187884609	187884609	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	188040768	188040768	+	IGR	SNP	T	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	189373841	189373841	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	189929508	189929508	+	IGR	SNP	T	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	191212563	191212563	+	IGR	SNP	G	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	191646958	191646958	+	IGR	SNP	A	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	191668782	191668782	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	193259557	193259557	+	IGR	SNP	C	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	193798881	193798881	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	194364750	194364750	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	194420460	194420460	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	194758323	194758323	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	195160339	195160339	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	200279606	200279606	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	201558762	201558762	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	208686416	208686416	+	IGR	SNP	C	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	209056234	209056234	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	209406485	209406485	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	213628902	213628902	+	IGR	SNP	G	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	215504451	215504451	+	IGR	SNP	T	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	217389995	217389995	+	IGR	SNP	A	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	220563355	220563355	+	IGR	SNP	T	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	221196897	221196897	+	IGR	SNP	C	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	221433018	221433018	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	221488938	221488938	+	IGR	SNP	T	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	221668222	221668222	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	228636918	228636918	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	228923411	228923411	+	IGR	SNP	C	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	230700897	230700897	+	IGR	SNP	C	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	234799344	234799344	+	IGR	SNP	C	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	238197555	238197555	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	238582179	238582179	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	238924714	238924714	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	238980160	238980160	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	239502033	239502033	+	IGR	SNP	C	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	242874448	242874448	+	IGR	SNP	G	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	242876748	242876748	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	247835334	247835334	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	248599224	248599224	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	29851146	29851146	+	IGR	SNP	G	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	37204323	37204323	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	37524107	37524107	+	IGR	SNP	C	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	37820860	37820860	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	38797307	38797307	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	38955676	38955676	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	47309203	47309203	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	48093560	48093560	+	IGR	SNP	T	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	48398149	48398149	+	IGR	SNP	G	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	56467568	56467568	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	63500520	63500520	+	IGR	SNP	G	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	69742839	69742839	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	69972846	69972846	+	IGR	SNP	C	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	71038764	71038764	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	73164742	73164743	+	IGR	DNP	TG	CT	CT			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	75462572	75462572	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	80149399	80149399	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	81199082	81199082	+	IGR	SNP	C	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	81243941	81243941	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	82763879	82763879	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	85166309	85166309	+	IGR	SNP	T	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	87647418	87647418	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	87818286	87818286	+	IGR	SNP	A	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	90701136	90701136	+	IGR	SNP	A	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	92875467	92875467	+	IGR	SNP	A	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	96001605	96001605	+	IGR	SNP	A	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	96307019	96307019	+	IGR	SNP	T	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	96463489	96463489	+	IGR	SNP	C	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	99002039	99002039	+	IGR	SNP	T	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	11730834	11730834	+	IGR	SNP	T	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	17736705	17736705	+	IGR	SNP	A	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	2052247	2052247	+	IGR	DEL	C	-	-	rs35153922		TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	21252179	21252179	+	IGR	SNP	G	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	21628754	21628754	+	IGR	SNP	G	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	24220907	24220907	+	IGR	SNP	T	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	24280613	24280613	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	24366273	24366273	+	IGR	SNP	T	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	29429151	29429151	+	IGR	SNP	G	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	29459063	29459063	+	IGR	SNP	A	G	G	rs75519006	by1000genomes	TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	29877057	29877057	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	34664011	34664011	+	IGR	SNP	C	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	38262449	38262449	+	IGR	SNP	C	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	38271493	38271493	+	IGR	SNP	C	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	38423648	38423648	+	IGR	SNP	A	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	38502196	38502196	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	38631164	38631164	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	39382966	39382966	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	4055094	4055094	+	IGR	SNP	T	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	42040340	42040340	+	IGR	SNP	G	A	A	rs143080595	by1000genomes	TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	43488936	43488936	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	46445061	46445061	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	46548982	46548982	+	IGR	SNP	T	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	46744367	46744367	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	48109817	48109817	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	51078437	51078437	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	53065770	53065770	+	IGR	SNP	A	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	53541630	53541630	+	IGR	SNP	G	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	53772269	53772269	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	53772626	53772626	+	IGR	SNP	C	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	53862789	53862789	+	IGR	SNP	G	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	53890109	53890109	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	54907337	54907337	+	IGR	SNP	C	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	56642752	56642752	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	56669799	56669799	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	57729443	57729443	+	IGR	SNP	G	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	57730678	57730678	+	IGR	SNP	A	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	57917201	57917201	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	8985427	8985427	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	10750026	10750026	+	IGR	SNP	C	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	23525836	23525836	+	IGR	SNP	C	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	24394390	24394390	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	24763006	24763006	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	28620543	28620543	+	IGR	SNP	A	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	29980802	29980802	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	31683466	31683466	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	31809101	31809101	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	32341855	32341855	+	IGR	SNP	C	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	33184490	33184490	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	33233642	33233642	+	IGR	SNP	C	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	37388593	37388593	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	9576746	9576746	+	IGR	SNP	C	A	A	rs146953695	by1000genomes	TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	9590915	9590915	+	IGR	SNP	G	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	9591568	9591568	+	IGR	SNP	G	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	22	16634968	16634968	+	IGR	DEL	G	-	-			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	22	27363366	27363366	+	IGR	SNP	G	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	22	27396864	27396864	+	IGR	SNP	G	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	22	27438227	27438227	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	22	31545563	31545563	+	IGR	SNP	T	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	22	34525279	34525279	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	22	34592012	34592012	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	22	34848752	34848752	+	IGR	SNP	C	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	22	34883785	34883785	+	IGR	SNP	T	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	22	36134584	36134584	+	IGR	SNP	C	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	22	41460068	41460068	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	22	49776771	49776771	+	IGR	SNP	T	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	104374114	104374114	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	104780396	104780396	+	IGR	SNP	C	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	105147727	105147727	+	IGR	SNP	A	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	106293209	106293209	+	IGR	SNP	C	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	107581624	107581624	+	IGR	SNP	T	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	107908746	107908746	+	IGR	SNP	G	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	107921127	107921127	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	108152822	108152822	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	108404353	108404353	+	IGR	SNP	C	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	108519699	108519699	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	113776873	113776873	+	IGR	SNP	A	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	115116956	115116956	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	117213530	117213530	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	117270126	117270126	+	IGR	SNP	T	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	117331144	117331144	+	IGR	SNP	T	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	117533959	117533959	+	IGR	SNP	A	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	117609531	117609531	+	IGR	SNP	G	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	117688087	117688087	+	IGR	SNP	C	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	117980221	117980221	+	IGR	SNP	A	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	117981109	117981109	+	IGR	SNP	C	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	118442628	118442628	+	IGR	SNP	C	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	118470264	118470264	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	119079490	119079490	+	IGR	SNP	T	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	119191328	119191328	+	IGR	SNP	G	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	119196348	119196348	+	IGR	SNP	G	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	119267257	119267257	+	IGR	SNP	G	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	119551772	119551772	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	122610902	122610902	+	IGR	SNP	T	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	122868759	122868759	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	124752814	124752814	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	124754503	124754503	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	125962858	125962858	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	126304543	126304543	+	IGR	SNP	C	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	126385348	126385348	+	IGR	SNP	C	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	126508449	126508449	+	IGR	SNP	C	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	126955695	126955695	+	IGR	SNP	A	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	127640467	127640467	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	130751198	130751198	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	132349299	132349299	+	IGR	SNP	C	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	132368704	132368704	+	IGR	SNP	A	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	132779652	132779652	+	IGR	SNP	T	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	132779661	132779661	+	IGR	SNP	T	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	133033161	133033161	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	13453868	13453868	+	IGR	SNP	T	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	134650496	134650496	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	137090514	137090514	+	IGR	SNP	G	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	137288591	137288591	+	IGR	SNP	T	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	137356288	137356288	+	IGR	SNP	G	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	137370561	137370561	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	139081397	139081397	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	139338434	139338434	+	IGR	SNP	A	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	139812093	139812093	+	IGR	SNP	A	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	139867489	139867489	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	140683771	140683771	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	142952274	142952274	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	143284804	143284804	+	IGR	SNP	T	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	145406778	145406778	+	IGR	SNP	C	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	14574352	14574352	+	IGR	SNP	T	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	14615659	14615659	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	146171470	146171470	+	IGR	SNP	A	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	147512095	147512095	+	IGR	SNP	T	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	147547518	147547518	+	IGR	SNP	T	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	148294821	148294821	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	148456154	148456154	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	14887132	14887132	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	149612089	149612089	+	IGR	SNP	G	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	154538174	154538174	+	IGR	SNP	A	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	155444533	155444533	+	IGR	SNP	T	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	155771058	155771058	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	158237014	158237014	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	158247891	158247891	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	165211249	165211249	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	166671091	166671091	+	IGR	SNP	G	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	168570929	168570929	+	IGR	SNP	G	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	16897418	16897418	+	IGR	SNP	G	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	16924881	16924881	+	IGR	SNP	C	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	17022292	17022292	+	IGR	SNP	A	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	17246313	17246313	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	17589062	17589062	+	IGR	SNP	T	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	177844187	177844187	+	IGR	SNP	T	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	181653066	181653066	+	IGR	SNP	T	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	184844824	184844824	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	186197039	186197039	+	IGR	SNP	T	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	187867020	187867020	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	19309461	19309461	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	194045027	194045027	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	194575561	194575562	+	IGR	DNP	CT	AC	AC			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	196162721	196162721	+	IGR	SNP	A	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	19675768	19675768	+	IGR	SNP	A	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	196956363	196956363	+	IGR	SNP	A	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	199254026	199254026	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	199632263	199632263	+	IGR	SNP	A	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	199904645	199904645	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	201538700	201538700	+	IGR	SNP	T	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	206485873	206485873	+	IGR	SNP	C	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	206525486	206525486	+	IGR	SNP	T	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	207132212	207132212	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	209943307	209943307	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	211579105	211579106	+	IGR	DEL	TC	-	-	rs72090929		TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	211849543	211849543	+	IGR	SNP	A	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	211849559	211849559	+	IGR	SNP	G	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	211991930	211991930	+	IGR	SNP	G	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	212227151	212227151	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	215500765	215500765	+	IGR	SNP	G	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	21809379	21809379	+	IGR	SNP	C	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	218119966	218119966	+	IGR	SNP	C	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	220616618	220616618	+	IGR	SNP	G	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	22297461	22297461	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	224063921	224063921	+	IGR	SNP	T	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	226813866	226813866	+	IGR	SNP	T	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	232403226	232403226	+	IGR	SNP	A	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	235717097	235717097	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	2370342	2370342	+	IGR	SNP	A	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	2519835	2519835	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	2691895	2691895	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	2840071	2840071	+	IGR	SNP	G	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	34106715	34106715	+	IGR	SNP	A	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	34237428	34237428	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	34549420	34549420	+	IGR	SNP	G	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	35446695	35446695	+	IGR	SNP	T	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	35646565	35646565	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	37646078	37646078	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	40104817	40104817	+	IGR	SNP	C	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	40804789	40804789	+	IGR	SNP	G	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	40918135	40918135	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	41199024	41199024	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	42051837	42051837	+	IGR	SNP	T	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	43082362	43082362	+	IGR	SNP	T	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	49808139	49808139	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	49932424	49932424	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	51316209	51316209	+	IGR	SNP	T	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	52102199	52102199	+	IGR	SNP	G	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	52427800	52427800	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	53221242	53221242	+	IGR	SNP	A	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	53621135	53621135	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	53858326	53858326	+	IGR	SNP	A	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	56977609	56977609	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	57778262	57778262	+	IGR	SNP	G	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	58109773	58109773	+	IGR	SNP	T	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	58582354	58582354	+	IGR	SNP	G	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	58723190	58723190	+	IGR	SNP	A	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	60513531	60513531	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	6442674	6442674	+	IGR	SNP	A	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	67900017	67900017	+	IGR	SNP	C	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	68084568	68084568	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	72106292	72106292	+	IGR	SNP	A	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	78818447	78818447	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	78891583	78891583	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	81175380	81175380	+	IGR	SNP	G	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	81330681	81330681	+	IGR	SNP	T	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	81337728	81337728	+	IGR	SNP	A	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	81364543	81364543	+	IGR	SNP	G	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	81433107	81433107	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	81606712	81606712	+	IGR	SNP	T	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	81655488	81655489	+	IGR	DNP	CC	AA	AA			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	81677142	81677142	+	IGR	SNP	G	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	81749201	81749201	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	81981647	81981647	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	81981727	81981727	+	IGR	SNP	T	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	83396077	83396077	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	84379142	84379142	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	8669689	8669689	+	IGR	SNP	C	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	88942014	88942014	+	IGR	SNP	T	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	91790986	91790986	+	IGR	SNP	C	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	91893950	91893950	+	IGR	SNP	T	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	91927071	91927071	+	IGR	SNP	G	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	91943769	91943769	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	104350209	104350209	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	109367388	109367388	+	IGR	SNP	G	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	109644019	109644019	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	110924246	110924246	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	111165282	111165282	+	IGR	SNP	G	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	112741813	112741813	+	IGR	SNP	C	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	116305220	116305220	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	116354625	116354625	+	IGR	SNP	C	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	116687370	116687370	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	117077541	117077541	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	118058805	118058805	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	126262745	126262745	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	127199014	127199014	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	130170	130170	+	IGR	SNP	G	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	133230411	133230411	+	IGR	SNP	A	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	135536190	135536190	+	IGR	SNP	T	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	135953783	135953783	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	137212159	137212159	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	137269939	137269939	+	IGR	SNP	C	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	137365668	137365668	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	137402573	137402573	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	138496834	138496834	+	IGR	SNP	C	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	139213449	139213449	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	140430413	140430413	+	IGR	SNP	T	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	140922901	140922901	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	142663974	142663974	+	IGR	SNP	G	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	144791080	144791080	+	IGR	SNP	C	A	A	rs116506815	by1000genomes	TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	144832110	144832110	+	IGR	SNP	A	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	145494400	145494400	+	IGR	SNP	C	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	145887665	145887665	+	IGR	SNP	C	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	146079914	146079914	+	IGR	SNP	T	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	146106183	146106183	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	146845873	146845873	+	IGR	SNP	T	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	1545841	1545841	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	161514927	161514927	+	IGR	SNP	C	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	163390865	163390867	+	IGR	DEL	TTC	-	-	rs5854053		TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	163719658	163719658	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	163920932	163920932	+	IGR	SNP	C	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	163991028	163991028	+	IGR	SNP	T	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	165102882	165102882	+	IGR	SNP	T	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	165610304	165610304	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	171277475	171277475	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	174466512	174466512	+	IGR	SNP	C	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	175857404	175857404	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	176488734	176488734	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	178211409	178211409	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	180195802	180195802	+	IGR	SNP	T	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	181786470	181786470	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	186228786	186228786	+	IGR	SNP	T	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	186930195	186930195	+	IGR	SNP	T	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	187323172	187323172	+	IGR	SNP	A	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	187474871	187474871	+	IGR	SNP	A	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	1875386	1875386	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	190433863	190433863	+	IGR	SNP	A	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	191356391	191356391	+	IGR	SNP	G	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	192705198	192705198	+	IGR	SNP	C	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	193916529	193916529	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	19639094	19639094	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	19663016	19663016	+	IGR	SNP	G	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	19723808	19723808	+	IGR	SNP	G	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	20522488	20522488	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	20529519	20529519	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	21168454	21168454	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	21234743	21234743	+	IGR	SNP	G	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	22795990	22795990	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	25839787	25839787	+	IGR	SNP	A	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	26013307	26013308	+	IGR	DNP	CT	TA	TA			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	26209647	26209647	+	IGR	SNP	A	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	26452437	26452437	+	IGR	SNP	C	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	26901409	26901409	+	IGR	SNP	G	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	28156935	28156935	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	28891766	28891766	+	IGR	SNP	T	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	29087238	29087238	+	IGR	SNP	C	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	31314091	31314091	+	IGR	SNP	C	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	3377773	3377773	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	33928112	33928112	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	34126582	34126582	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	34576420	34576420	+	IGR	SNP	C	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	36296338	36296338	+	IGR	SNP	C	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	36647404	36647404	+	IGR	SNP	T	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	36855038	36855038	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	36915710	36915710	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	38724828	38724828	+	IGR	SNP	G	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	40402732	40402732	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	40773372	40773372	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	42071504	42071504	+	IGR	SNP	C	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	43231749	43231749	+	IGR	SNP	C	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	43797477	43797477	+	IGR	SNP	A	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	44213583	44213583	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	5501648	5501648	+	IGR	SNP	C	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	59548488	59548488	+	IGR	SNP	T	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	5999438	5999438	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	6007517	6007517	+	IGR	SNP	T	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	6008988	6008988	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	62343362	62343362	+	IGR	SNP	T	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	70550898	70550898	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	73265731	73265731	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	73808447	73808447	+	IGR	SNP	G	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	74016123	74016123	+	IGR	SNP	A	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	74209762	74209762	+	IGR	SNP	G	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	75858723	75858723	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	75908927	75908927	+	IGR	SNP	A	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	76235444	76235444	+	IGR	SNP	C	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	76314325	76314325	+	IGR	SNP	G	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	77776516	77776516	+	IGR	SNP	C	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	77952112	77952112	+	IGR	SNP	G	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	78196641	78196641	+	IGR	SNP	G	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	78234890	78234890	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	80348396	80348396	+	IGR	SNP	C	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	80588173	80588173	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	86132095	86132095	+	IGR	SNP	T	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	87087702	87087702	+	IGR	SNP	G	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	88338792	88338792	+	IGR	SNP	A	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	88372849	88372849	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	88935563	88935563	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	88997244	88997244	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	90045479	90045479	+	IGR	SNP	G	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	93919848	93919848	+	IGR	SNP	C	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	94303159	94303159	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	94485031	94485032	+	IGR	DNP	GG	TT	TT			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	95862634	95862634	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	96354652	96354652	+	IGR	SNP	T	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	98362657	98362657	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	98377951	98377951	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	99353800	99353800	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	100626084	100626084	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	100692300	100692300	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	103098968	103098968	+	IGR	SNP	T	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	103546382	103546382	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	104982987	104982987	+	IGR	SNP	A	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	105275590	105275590	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	105977429	105977429	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	107326782	107326782	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	108369006	108369006	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	108677862	108677862	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	109600623	109600623	+	IGR	SNP	G	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	111372860	111372860	+	IGR	SNP	A	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	112215180	112215180	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	112489239	112489239	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	112691870	112691870	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	11273186	11273186	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	113379073	113379073	+	IGR	SNP	C	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	11513251	11513251	+	IGR	SNP	G	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	115668078	115668078	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	116295966	116295966	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	116818493	116818493	+	IGR	SNP	G	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	117519688	117519688	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	117584205	117584205	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	118406370	118406370	+	IGR	SNP	G	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	12177880	12177880	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	121908220	121908220	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	121956047	121956047	+	IGR	SNP	T	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	12930485	12930485	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	13123190	13123190	+	IGR	SNP	T	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	131278960	131278960	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	131720307	131720307	+	IGR	SNP	T	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	131737420	131737420	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	132085155	132085155	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	132168686	132168686	+	IGR	SNP	T	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	132347732	132347732	+	IGR	SNP	C	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	132439038	132439038	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	13278726	13278726	+	IGR	SNP	A	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	132809520	132809520	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	133792602	133792602	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	134610245	134610245	+	IGR	SNP	G	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	134612747	134612747	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	135413961	135413961	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	135967958	135967958	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	136041242	136041242	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	136106002	136106002	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	136447000	136447000	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	136903081	136903081	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	137536041	137536041	+	IGR	SNP	C	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	137862814	137862814	+	IGR	SNP	T	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	138195938	138195938	+	IGR	SNP	T	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	13959109	13959109	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	14093224	14093224	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	141523728	141523728	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	142320681	142320681	+	IGR	SNP	T	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	142423876	142423876	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	144906278	144906278	+	IGR	SNP	T	C	C	rs139900169	by1000genomes	TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	147583537	147583537	+	IGR	SNP	G	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	148136320	148136320	+	IGR	SNP	A	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	149447637	149447637	+	IGR	SNP	A	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	150058025	150058025	+	IGR	SNP	A	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	154927288	154927288	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	155909397	155909397	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	156046156	156046156	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	159214957	159214957	+	IGR	SNP	T	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	160867082	160867082	+	IGR	SNP	T	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	161090698	161090698	+	IGR	SNP	A	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	161099520	161099520	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	161464258	161464258	+	IGR	SNP	C	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	161576064	161576064	+	IGR	SNP	T	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	161969563	161969563	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	162012396	162012396	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	163396544	163396544	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	163443520	163443520	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	163486012	163486012	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	163690787	163690787	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	164013257	164013257	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	165536438	165536438	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	165841713	165841713	+	IGR	SNP	C	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	166429780	166429780	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	167437637	167437637	+	IGR	SNP	A	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	168727454	168727454	+	IGR	SNP	G	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	16999620	16999620	+	IGR	SNP	C	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	170707821	170707821	+	IGR	SNP	C	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	171223437	171223437	+	IGR	SNP	A	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	174842543	174842543	+	IGR	SNP	T	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	176981153	176981153	+	IGR	SNP	C	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	177378487	177378487	+	IGR	SNP	G	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	177865110	177865110	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	178195681	178195682	+	IGR	DNP	CC	AA	AA			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	178965597	178965597	+	IGR	SNP	T	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	179162576	179162576	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	180258456	180258456	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	180541091	180541091	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	180949936	180949936	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	180956538	180956538	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	181124656	181124656	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	181244220	181244220	+	IGR	SNP	G	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	182304113	182304114	+	IGR	DNP	TC	AA	AA			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	182552008	182552008	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	182697216	182697216	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	186920972	186920972	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	188651660	188651660	+	IGR	SNP	T	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	188827227	188827227	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	190369308	190369308	+	IGR	SNP	G	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	190576287	190576287	+	IGR	SNP	C	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	190622196	190622196	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	190652582	190652582	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	20194169	20194169	+	IGR	SNP	A	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	2021895	2021895	+	IGR	SNP	A	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	22206288	22206288	+	IGR	SNP	T	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	23429809	23429809	+	IGR	SNP	G	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	24158801	24158801	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	24696849	24696849	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	27424699	27424699	+	IGR	SNP	T	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	27444646	27444646	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	28283285	28283285	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	28302821	28302821	+	IGR	SNP	C	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	28912416	28912416	+	IGR	SNP	G	T	T	rs112743275		TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	29234529	29234529	+	IGR	SNP	G	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	29643223	29643223	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	30457276	30457276	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	30527320	30527320	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	30678857	30678857	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	31762832	31762832	+	IGR	SNP	C	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	33632828	33632828	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	34290239	34290239	+	IGR	SNP	G	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	34578094	34578094	+	IGR	SNP	T	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	34658534	34658534	+	IGR	SNP	T	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	35622390	35622390	+	IGR	SNP	T	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	35622908	35622908	+	IGR	SNP	G	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	36732325	36732325	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	36982070	36982070	+	IGR	SNP	G	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	37174565	37174565	+	IGR	SNP	T	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	3790932	3790932	+	IGR	SNP	T	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	41758114	41758114	+	IGR	SNP	T	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	43194228	43194228	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	43590080	43590080	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	43617047	43617047	+	IGR	SNP	G	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	44461794	44461794	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	44985405	44985405	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	45089893	45089893	+	IGR	SNP	C	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	45611286	45611286	+	IGR	SNP	T	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	46005397	46005397	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	46427065	46427065	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	46489442	46489443	+	IGR	DNP	AA	TT	TT			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	46564918	46564918	+	IGR	SNP	G	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	55251070	55251070	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	57411673	57411673	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	58368779	58368779	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	61171256	61171256	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	61635710	61635710	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	62005297	62005297	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	64216592	64216592	+	IGR	SNP	C	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	67249161	67249161	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	67735459	67735459	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	67835776	67835776	+	IGR	SNP	T	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	68041556	68041556	+	IGR	SNP	A	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	68124382	68124382	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	68220557	68220557	+	IGR	SNP	C	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	69980631	69980631	+	IGR	SNP	C	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	70232018	70232018	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	70265110	70265110	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	70543156	70543156	+	IGR	SNP	T	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	73659203	73659203	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	75527769	75527769	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	76140761	76140761	+	IGR	SNP	A	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	83322610	83322610	+	IGR	SNP	T	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	85263078	85263078	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	85295611	85295611	+	IGR	SNP	A	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	85316560	85316560	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	86157233	86157233	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	9063332	9063332	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	91012112	91012112	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	94708274	94708274	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	94797374	94797374	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	96783503	96783503	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	96832183	96832183	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	97372098	97372098	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	97376734	97376734	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	97384029	97384029	+	IGR	SNP	T	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	97514089	97514089	+	IGR	SNP	C	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	9768957	9768957	+	IGR	SNP	C	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	97827803	97827803	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	97842622	97842622	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	97859687	97859687	+	IGR	SNP	G	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	98129073	98129073	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	100128593	100128593	+	IGR	SNP	G	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	104165950	104165950	+	IGR	SNP	A	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	105507453	105507453	+	IGR	SNP	A	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	105751990	105751991	+	IGR	DNP	CC	TT	TT			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	107131869	107131869	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	108031469	108031469	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	109618211	109618211	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	110194381	110194381	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	110208971	110208971	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	116252759	116252759	+	IGR	SNP	A	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	117146454	117146454	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	117819547	117819547	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	117981652	117981652	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	118779328	118779328	+	IGR	SNP	T	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	120920503	120920503	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	121189679	121189679	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	12245585	12245585	+	IGR	SNP	A	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	12313625	12313625	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	123238159	123238159	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	124371150	124371150	+	IGR	SNP	T	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	12528259	12528259	+	IGR	SNP	C	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	127935192	127935192	+	IGR	SNP	T	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	128067247	128067247	+	IGR	SNP	G	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	128141289	128141289	+	IGR	SNP	T	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	12928271	12928271	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	129958100	129958100	+	IGR	SNP	C	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	142082247	142082247	+	IGR	SNP	G	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	143328399	143328399	+	IGR	SNP	G	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	144035950	144035950	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	144609077	144609077	+	IGR	SNP	G	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	144790055	144790055	+	IGR	SNP	A	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	14545795	14545795	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	1459450	1459450	+	IGR	SNP	T	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	15083519	15083519	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	151761606	151761606	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	152512092	152512092	+	IGR	SNP	G	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	152534342	152534342	+	IGR	SNP	A	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	152626200	152626200	+	IGR	SNP	G	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	152683112	152683112	+	IGR	SNP	C	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	153245939	153245939	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	15414561	15414561	+	IGR	SNP	T	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	154405913	154405913	+	IGR	SNP	C	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	155068495	155068495	+	IGR	SNP	G	C	C	rs35876205		TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	157506826	157506826	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	161635573	161635573	+	IGR	SNP	T	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	161853966	161853966	+	IGR	SNP	A	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	162475379	162475379	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	162721632	162721632	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	163093524	163093524	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	164265625	164265625	+	IGR	SNP	G	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	164766346	164766346	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	165636297	165636297	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	165723559	165723560	+	IGR	DNP	GA	TT	TT			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	166597388	166597388	+	IGR	SNP	T	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	169568926	169568926	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	16973377	16973377	+	IGR	DEL	C	-	-	rs71880407		TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	169774051	169774051	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	170759073	170759073	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	170772724	170772724	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	172036823	172036823	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	172895706	172895706	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	173775340	173775341	+	IGR	DNP	GG	TT	TT			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	173794906	173794906	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	174272226	174272226	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	174697149	174697149	+	IGR	SNP	C	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	175000923	175000923	+	IGR	SNP	C	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	19116358	19116358	+	IGR	SNP	A	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	20292798	20292798	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	20313854	20313854	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	20331465	20331465	+	IGR	SNP	G	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	20598659	20598659	+	IGR	SNP	A	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	20601485	20601485	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	21190238	21190241	+	IGR	DEL	AAAC	-	-			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	21268291	21268291	+	IGR	SNP	G	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	21280631	21280631	+	IGR	DEL	C	-	-			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	22911037	22911037	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	23063455	23063455	+	IGR	SNP	A	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	23529562	23529562	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	24818073	24818073	+	IGR	SNP	G	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	25181205	25181205	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	25846168	25846168	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	26227592	26227592	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	27201361	27201361	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	28017999	28017999	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	2873132	2873132	+	IGR	SNP	A	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	28764740	28764740	+	IGR	SNP	T	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	29391427	29391427	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	29600843	29600843	+	IGR	SNP	G	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	29873311	29873311	+	IGR	SNP	G	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	30362770	30362770	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	30686843	30686843	+	IGR	SNP	A	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	30688264	30688264	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	31353080	31353080	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	32792718	32792718	+	IGR	SNP	A	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	32994637	32994637	+	IGR	SNP	C	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	33032297	33032297	+	IGR	SNP	C	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	33332180	33332183	+	IGR	DEL	TAGA	-	-	rs10605933		TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	33942771	33942771	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	34359674	34359674	+	IGR	SNP	C	G	G	rs144158517	by1000genomes	TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	35815952	35815952	+	IGR	SNP	A	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	36404388	36404388	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	36593512	36593512	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	38010184	38010184	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	38101134	38101134	+	IGR	SNP	A	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	38124304	38124305	+	IGR	DNP	CC	AA	AA			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	40150988	40150988	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	40313160	40313160	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	40474926	40474926	+	IGR	SNP	C	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	41284534	41284534	+	IGR	SNP	C	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	41284942	41284942	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	41893283	41893283	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	42220230	42220230	+	IGR	SNP	A	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	43729754	43729754	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	43893310	43893310	+	IGR	SNP	G	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	45050311	45050311	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	45175605	45175605	+	IGR	SNP	T	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	45243312	45243312	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	45789178	45789178	+	IGR	SNP	A	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	49471708	49471708	+	IGR	SNP	T	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	52729165	52729165	+	IGR	SNP	A	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	5503413	5503413	+	IGR	SNP	C	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	56752847	56752847	+	IGR	SNP	T	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	56892109	56892109	+	IGR	SNP	C	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	5727825	5727825	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	62729270	62729270	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	63216710	63216710	+	IGR	SNP	T	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	67057650	67057650	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	67846184	67846184	+	IGR	SNP	T	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	68084494	68084494	+	IGR	SNP	G	A	A	rs139067702		TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	6920877	6920877	+	IGR	SNP	T	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	7006736	7006736	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	7074054	7074054	+	IGR	SNP	C	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	71144111	71144111	+	IGR	SNP	C	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	71158948	71158948	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	73515209	73515209	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	74437449	74437449	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	75113934	75113934	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	75153891	75153891	+	IGR	SNP	T	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	77222079	77222079	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	83994076	83994076	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	84846035	84846035	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	85176081	85176081	+	IGR	SNP	T	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	8574738	8574739	+	IGR	INS	-	T	T	rs3037537		TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	86001535	86001536	+	IGR	DNP	CA	AG	AG			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	86235711	86235711	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	8781029	8781029	+	IGR	SNP	G	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	88685059	88685059	+	IGR	SNP	A	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	92470239	92470239	+	IGR	SNP	A	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	92603520	92603520	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	97237350	97237351	+	IGR	DNP	GG	TT	TT			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	97406218	97406218	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	97827095	97827095	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	99577189	99577189	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	99728376	99728376	+	IGR	SNP	C	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	102565899	102565899	+	IGR	SNP	T	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	102724587	102724587	+	IGR	SNP	C	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	105038922	105038922	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	112316163	112316163	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	112952082	112952082	+	IGR	SNP	G	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	114928324	114928324	+	IGR	SNP	G	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	118138879	118138879	+	IGR	SNP	C	A	A	rs138928673	by1000genomes	TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	119962665	119962665	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	122175680	122175680	+	IGR	SNP	T	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	123262423	123262423	+	IGR	SNP	T	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	12514162	12514162	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	12680500	12680500	+	IGR	SNP	C	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	137555961	137555961	+	IGR	SNP	T	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	148327220	148327221	+	IGR	DNP	GG	TT	TT			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	153603783	153603783	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	161196883	161196883	+	IGR	SNP	A	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	161211594	161211594	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	165524025	165524025	+	IGR	SNP	G	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	23116227	23116227	+	IGR	SNP	T	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	27545326	27545326	+	IGR	SNP	G	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	28626949	28626949	+	IGR	SNP	A	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	29028357	29028357	+	IGR	SNP	A	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	29044341	29044341	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	29221923	29221923	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	3165390	3165390	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	34231178	34231178	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	3563845	3563845	+	IGR	SNP	G	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	40577164	40577164	+	IGR	SNP	T	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	40946870	40946870	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	45732904	45732904	+	IGR	SNP	T	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	45787715	45787715	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	47165982	47165982	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	48608887	48608887	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	48653670	48653670	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	48964976	48964976	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	49170724	49170724	+	IGR	SNP	G	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	49327793	49327793	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	49367514	49367514	+	IGR	SNP	T	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	49940758	49940758	+	IGR	SNP	C	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	51051469	51051469	+	IGR	SNP	G	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	51219504	51219504	+	IGR	SNP	T	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	54324511	54324512	+	IGR	DNP	CC	AA	AA			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	54413299	54413299	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	55483829	55483829	+	IGR	SNP	G	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	57806923	57806923	+	IGR	SNP	T	C	C	rs114537865	by1000genomes	TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	57976174	57976174	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	58064139	58064139	+	IGR	SNP	T	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	6088530	6088530	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	61982360	61982360	+	IGR	SNP	G	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	63573196	63573196	+	IGR	SNP	A	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	63921632	63921633	+	IGR	DNP	CC	AA	AA			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	67582792	67582792	+	IGR	SNP	T	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	71872173	71872173	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	72343409	72343409	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	77964680	77964680	+	IGR	SNP	T	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	78466108	78466108	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	79313139	79313139	+	IGR	SNP	A	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	81757450	81757450	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	8315602	8315602	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	87312758	87312758	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	87315521	87315521	+	IGR	SNP	C	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	8895224	8895224	+	IGR	SNP	T	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	89195935	89195935	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	89254871	89254871	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	91013263	91013263	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	91543318	91543318	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	92413906	92413906	+	IGR	SNP	G	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	93229138	93229138	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	93382662	93382662	+	IGR	SNP	G	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	9391319	9391319	+	IGR	SNP	G	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	94562347	94562347	+	IGR	SNP	A	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	94875914	94875914	+	IGR	SNP	G	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	95430356	95430356	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	96739970	96739970	+	IGR	SNP	A	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	97096843	97096843	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	98817776	98817776	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	10459719	10459719	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	10491203	10491203	+	IGR	SNP	G	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	10687370	10687370	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	108471965	108471965	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	108654997	108654997	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	109585868	109585868	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	110152252	110152252	+	IGR	SNP	T	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	110270011	110270011	+	IGR	SNP	C	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	112787535	112787535	+	IGR	SNP	A	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	113115466	113115466	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	113379587	113379588	+	IGR	DNP	GG	TT	TT			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	114373846	114373846	+	IGR	SNP	T	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	115408412	115408412	+	IGR	SNP	T	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	117699881	117699881	+	IGR	SNP	A	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	118788893	118788893	+	IGR	SNP	G	T	T	rs78791580	by1000genomes	TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	118914858	118914858	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	119075748	119075748	+	IGR	SNP	A	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	119239184	119239184	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	119878482	119878482	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	12199617	12199617	+	IGR	DEL	G	-	-	rs138775433		TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	124349425	124349425	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	125460638	125460638	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	131558417	131558417	+	IGR	SNP	T	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	132851006	132851006	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	136041485	136041485	+	IGR	SNP	G	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	136041600	136041600	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	136143051	136143051	+	IGR	SNP	C	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	136459128	136459128	+	IGR	SNP	T	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	137824193	137824193	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	140817749	140817749	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	140987041	140987041	+	IGR	SNP	A	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	141987288	141987288	+	IGR	SNP	T	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	142928138	142928138	+	IGR	SNP	A	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	145548436	145548436	+	IGR	SNP	A	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	145632215	145632215	+	IGR	SNP	G	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	15040783	15040783	+	IGR	SNP	C	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	152613734	152613734	+	IGR	SNP	G	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	153112968	153112968	+	IGR	SNP	C	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	153225359	153225359	+	IGR	SNP	C	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	155726548	155726548	+	IGR	SNP	T	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	15893172	15893172	+	IGR	SNP	G	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	16082360	16082360	+	IGR	SNP	T	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	17801035	17801035	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	19239883	19239883	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	19240301	19240301	+	IGR	SNP	T	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	19588534	19588534	+	IGR	SNP	C	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	19635630	19635630	+	IGR	SNP	C	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	19646137	19646137	+	IGR	SNP	T	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	20504348	20504348	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	20610721	20610721	+	IGR	SNP	A	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	21258005	21258005	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	25424163	25424163	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	25524561	25524561	+	IGR	SNP	A	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	31362035	31362035	+	IGR	SNP	A	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	31458080	31458080	+	IGR	SNP	C	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	3276496	3276496	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	33877011	33877011	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	34207672	34207672	+	IGR	SNP	T	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	34247444	34247444	+	IGR	SNP	G	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	34296499	34296499	+	IGR	SNP	C	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	41049164	41049164	+	IGR	SNP	C	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	41142095	41142095	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	41203848	41203848	+	IGR	SNP	G	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	41283870	41283870	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	41664833	41664833	+	IGR	SNP	A	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	43016885	43016886	+	IGR	DNP	TG	CT	CT			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	45477149	45477149	+	IGR	SNP	A	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	46114620	46114620	+	IGR	SNP	A	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	46153147	46153147	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	46468475	46468475	+	IGR	SNP	C	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	46472196	46472196	+	IGR	SNP	T	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	48860920	48860920	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	48903038	48903038	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	49176645	49176645	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	49185639	49185639	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	49646527	49646527	+	IGR	SNP	T	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	52902245	52902245	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	53031520	53031520	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	53223501	53223501	+	IGR	SNP	C	A	A	rs149613657	by1000genomes	TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	53504633	53504633	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	53569023	53569023	+	IGR	SNP	G	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	53583129	53583129	+	IGR	SNP	T	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	53652697	53652697	+	IGR	SNP	G	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	53978252	53978252	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	54311499	54311499	+	IGR	SNP	A	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	55832731	55832731	+	IGR	SNP	A	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	56262022	56262022	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	56313209	56313209	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	56424701	56424701	+	IGR	SNP	T	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	56463260	56463260	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	57128471	57128471	+	IGR	SNP	G	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	57299712	57299712	+	IGR	SNP	T	C	C	rs148165507	by1000genomes	TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	57300481	57300481	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	57316864	57316864	+	IGR	SNP	T	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	57556719	57556719	+	IGR	SNP	G	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	57557066	57557066	+	IGR	SNP	C	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	57619945	57619945	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	57886739	57886739	+	IGR	SNP	G	T	T	rs148789141	by1000genomes	TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	57904778	57904778	+	IGR	SNP	C	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	57921255	57921255	+	IGR	SNP	A	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	61100028	61100028	+	IGR	SNP	T	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	61819279	61819279	+	IGR	SNP	C	T	T	rs147610529	by1000genomes	TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	61824542	61824542	+	IGR	SNP	T	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	61970459	61970459	+	IGR	SNP	G	T	T	rs28830245		TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	62501794	62501794	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	63351368	63351368	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	63471912	63471912	+	IGR	SNP	C	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	63574920	63574920	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	67177348	67177348	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	67661274	67661274	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	67892898	67892898	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	7058188	7058188	+	IGR	SNP	G	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	79297571	79297571	+	IGR	SNP	G	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	80968943	80968943	+	IGR	SNP	C	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	81059576	81059576	+	IGR	SNP	G	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	81502018	81502018	+	IGR	SNP	G	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	83839784	83839784	+	IGR	SNP	C	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	84834283	84834283	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	85973509	85973509	+	IGR	SNP	G	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	89558691	89558691	+	IGR	SNP	G	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	89635348	89635348	+	IGR	SNP	A	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	9104261	9104261	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	91360713	91360713	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	9167292	9167292	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	9388275	9388275	+	IGR	SNP	C	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	96390503	96390503	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	96963066	96963066	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	9767231	9767231	+	IGR	SNP	T	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	102131870	102131870	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	105284052	105284052	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	105747326	105747326	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	107077990	107077990	+	IGR	SNP	A	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	111088622	111088622	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	111187580	111187580	+	IGR	SNP	A	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	111510234	111510235	+	IGR	DNP	GG	TT	TT			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	111510681	111510681	+	IGR	SNP	A	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	112125497	112125497	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	112387976	112387976	+	IGR	SNP	T	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	112648278	112648278	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	112923406	112923406	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	112927593	112927593	+	IGR	SNP	G	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	113131813	113131813	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	114499313	114499313	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	115410894	115410894	+	IGR	SNP	G	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	1154933	1154933	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	115988131	115988131	+	IGR	SNP	G	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	116008182	116008182	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	116395108	116395108	+	IGR	SNP	G	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	116720321	116720321	+	IGR	SNP	A	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	116858465	116858465	+	IGR	SNP	C	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	117180128	117180128	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	117385294	117385294	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	118312224	118312224	+	IGR	SNP	T	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	118568841	118568841	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	123505374	123505374	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	123570432	123570432	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	123669880	123669880	+	IGR	SNP	C	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	12554765	12554765	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	126969524	126969524	+	IGR	SNP	A	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	129546679	129546679	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	130499272	130499272	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	131783264	131783264	+	IGR	SNP	A	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	132232335	132232335	+	IGR	SNP	C	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	134183530	134183531	+	IGR	DNP	CC	AT	AT			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	134905794	134905794	+	IGR	SNP	T	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	135412877	135412877	+	IGR	SNP	A	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	135912714	135912714	+	IGR	SNP	A	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	136383864	136383864	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	136398970	136398970	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	13659172	13659172	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	13694589	13694589	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	1371529	1371529	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	137584450	137584450	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	137894583	137894583	+	IGR	SNP	A	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	137938462	137938462	+	IGR	SNP	T	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	138163327	138163328	+	IGR	DNP	CC	AA	AA			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	138543105	138543105	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	138816167	138816167	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	138857123	138857123	+	IGR	DEL	T	-	-	rs34793131		TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	15174785	15174785	+	IGR	SNP	T	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	17275664	17275664	+	IGR	SNP	C	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	20580560	20580560	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	20777530	20777530	+	IGR	SNP	C	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	21416000	21416000	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	31177343	31177343	+	IGR	SNP	T	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	32944157	32944157	+	IGR	SNP	G	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	33578912	33578913	+	IGR	DNP	GG	TT	TT			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	33924307	33924307	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	33989016	33989016	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	34076586	34076586	+	IGR	SNP	G	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	34079023	34079023	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	36214315	36214315	+	IGR	SNP	A	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	36240851	36240851	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	36954853	36954853	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	36955908	36955908	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	37386580	37386580	+	IGR	SNP	G	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	40852540	40852540	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	46922434	46922434	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	47018849	47018849	+	IGR	SNP	T	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	47331996	47331996	+	IGR	SNP	G	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	47340073	47340073	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	47346477	47346477	+	IGR	SNP	C	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	47349203	47349203	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	47502565	47502565	+	IGR	SNP	A	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	48917144	48917144	+	IGR	SNP	T	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	4985937	4985937	+	IGR	SNP	G	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	49875261	49875261	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	5016697	5016697	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	50167315	50167315	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	50183798	50183798	+	IGR	SNP	T	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	50773725	50773725	+	IGR	SNP	C	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	52146851	52146851	+	IGR	SNP	C	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	5240021	5240021	+	IGR	SNP	A	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	5278062	5278062	+	IGR	SNP	G	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	5285716	5285716	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	5298998	5298998	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	5313000	5313000	+	IGR	SNP	C	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	5334407	5334407	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	54202224	54202224	+	IGR	SNP	G	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	57329474	57329474	+	IGR	SNP	G	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	58118610	58118610	+	IGR	SNP	G	A	A	rs78878506		TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	58222294	58222294	+	IGR	SNP	A	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	60913136	60913136	+	IGR	SNP	C	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	61341842	61341842	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	64664873	64664873	+	IGR	SNP	G	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	64793609	64793609	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	64843189	64843189	+	IGR	SNP	C	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	65033312	65033312	+	IGR	SNP	G	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	65207825	65207825	+	IGR	SNP	C	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	65262073	65262073	+	IGR	SNP	C	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	65403883	65403883	+	IGR	SNP	G	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	65479237	65479237	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	65928187	65928187	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	6640599	6640599	+	IGR	SNP	G	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	66775989	66775989	+	IGR	SNP	A	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	70035704	70035704	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	7217619	7217619	+	IGR	SNP	C	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	76790010	76790011	+	IGR	DNP	GG	TT	TT			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	77484888	77484888	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	77507165	77507165	+	IGR	SNP	G	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	77514424	77514424	+	IGR	SNP	A	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	7772423	7772423	+	IGR	DEL	T	-	-			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	77811733	77811733	+	IGR	SNP	G	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	79106453	79106453	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	79339622	79339622	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	80052556	80052556	+	IGR	SNP	A	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	80437848	80437848	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	82817814	82817814	+	IGR	SNP	G	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	83281618	83281618	+	IGR	SNP	C	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	83401941	83401941	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	83536977	83536977	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	83635912	83635912	+	IGR	SNP	G	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	83972013	83972013	+	IGR	SNP	C	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	84455319	84455319	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	84455655	84455655	+	IGR	SNP	A	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	84531921	84531921	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	84680358	84680358	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	86556154	86556154	+	IGR	SNP	T	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	87806075	87806075	+	IGR	SNP	T	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	88698878	88698878	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	89380859	89380859	+	IGR	SNP	G	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	89497573	89497573	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	89684261	89684261	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	89908028	89908028	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	90086625	90086625	+	IGR	SNP	T	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	90320707	90320707	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	90358863	90358863	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	90407041	90407041	+	IGR	SNP	C	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	91178143	91178143	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	91411150	91411150	+	IGR	SNP	A	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	91495674	91495674	+	IGR	SNP	T	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	92463879	92463879	+	IGR	SNP	G	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	92694579	92694579	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	9274443	9274443	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	98445575	98445575	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	99321551	99321551	+	IGR	SNP	G	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	100508021	100508021	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	101969343	101969343	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	102035560	102035560	+	IGR	SNP	T	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	103439886	103439886	+	IGR	SNP	A	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	103607614	103607614	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	104828574	104828574	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	105113580	105113580	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	105534732	105534732	+	IGR	SNP	C	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	105665884	105665884	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	106295600	106295600	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	10710021	10710021	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	107424274	107424274	+	IGR	SNP	A	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	110796766	110796766	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	11241423	11241423	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	11393486	11393486	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	118473489	118473489	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	1185363	1185363	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	120206097	120206097	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	120528973	120528973	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	120583710	120583710	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	120827193	120827193	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	122469180	122469180	+	IGR	SNP	T	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	122497659	122497659	+	IGR	SNP	T	C	C	rs142347133	by1000genomes	TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	122651893	122651893	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	122806109	122806109	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	122900269	122900269	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	122976410	122976410	+	IGR	SNP	G	T	T	rs139832493	by1000genomes	TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	138032192	138032192	+	IGR	SNP	G	T	T	rs141665442	by1000genomes	TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	14041575	14041575	+	IGR	SNP	C	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	14475547	14475547	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	15999367	15999367	+	IGR	SNP	A	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	16071074	16071074	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	16235337	16235337	+	IGR	SNP	A	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	16392988	16392988	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	17540550	17540550	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	21622905	21622905	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	22324353	22324353	+	IGR	SNP	G	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	22831513	22831513	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	24122200	24122200	+	IGR	SNP	A	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	24325008	24325008	+	IGR	SNP	T	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	24483935	24483935	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	24763086	24763086	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	24874844	24874844	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	25562527	25562527	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	25754630	25754630	+	IGR	SNP	C	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	26010129	26010132	+	IGR	DEL	CATT	-	-	rs67749774		TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	2900476	2900476	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	29955471	29955471	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	30083735	30083735	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	30088894	30088894	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	30799619	30799619	+	IGR	DEL	G	-	-			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	31969587	31969587	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	32061333	32061333	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	6209338	6209338	+	IGR	SNP	A	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	66478835	66478835	+	IGR	SNP	A	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	66833183	66833183	+	IGR	SNP	C	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	66836678	66836678	+	IGR	SNP	C	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	68415505	68415505	+	IGR	SNP	A	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	68450689	68450689	+	IGR	SNP	A	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	68484517	68484517	+	IGR	SNP	A	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	68999425	68999425	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	72606659	72606659	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	75489162	75489162	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	76232108	76232108	+	IGR	SNP	G	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	7624367	7624367	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	76381684	76381684	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	77862591	77862591	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	78056522	78056522	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	78189056	78189056	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	81406658	81406658	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	81519514	81519514	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	82521782	82521782	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	8287133	8287133	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	83617380	83617380	+	IGR	SNP	C	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	85494569	85494569	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	89257605	89257605	+	IGR	SNP	G	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	94276328	94276328	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	111846976	111846976	+	IGR	DEL	G	-	-			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	115828107	115828107	+	IGR	SNP	G	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	125629118	125629119	+	IGR	DNP	CC	AA	AA			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	128024526	128024526	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	137326981	137326981	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	142184056	142184056	+	IGR	SNP	C	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	143668511	143668511	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	144339028	144339028	+	IGR	SNP	G	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	1916577	1916577	+	IGR	SNP	G	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	39088914	39088914	+	IGR	SNP	G	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	39191724	39191724	+	IGR	SNP	A	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	43948686	43948686	+	IGR	SNP	T	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	61729554	61729554	+	IGR	SNP	C	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	6319073	6319073	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	63703639	63703639	+	IGR	SNP	T	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	65058428	65058428	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	72530645	72530645	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	75845475	75845475	+	IGR	SNP	G	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	83203296	83203296	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	84463693	84463693	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	86465917	86465917	+	IGR	SNP	C	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	879341	879341	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	88200335	88200335	+	IGR	SNP	G	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	89295076	89295076	+	IGR	SNP	G	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	92477570	92477570	+	IGR	SNP	T	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	954233	954233	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	Y	10013035	10013035	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	Y	13445111	13445111	+	IGR	SNP	T	A	A	rs75024723		TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	Y	13462987	13462987	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	Y	13484897	13484897	+	IGR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	Y	21490018	21490018	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	Y	21490019	21490019	+	IGR	SNP	T	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	Y	28760914	28760915	+	IGR	INS	-	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	Y	3719132	3719132	+	IGR	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VAT1L	57687	broad.mit.edu	37	16	77899619	77899619	+	Intron	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VAV3	10451	broad.mit.edu	37	1	108152603	108152603	+	Intron	SNP	G	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VSTM2L	128434	broad.mit.edu	37	20	36541078	36541078	+	Intron	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VTCN1	79679	broad.mit.edu	37	1	117749226	117749226	+	Intron	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VWC2L	402117	broad.mit.edu	37	2	215301440	215301440	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WBSCR17	64409	broad.mit.edu	37	7	70729446	70729446	+	Intron	SNP	C	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WBSCR17	64409	broad.mit.edu	37	7	71082458	71082458	+	Intron	SNP	C	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR25	79446	broad.mit.edu	37	14	100864250	100864250	+	Intron	SNP	A	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR27	253769	broad.mit.edu	37	6	170058358	170058358	+	Intron	SNP	C	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR41	55255	broad.mit.edu	37	5	76734496	76734496	+	Intron	SNP	C	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR41	55255	broad.mit.edu	37	5	76745546	76745546	+	Intron	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR52	55779	broad.mit.edu	37	3	113128407	113128407	+	Intron	SNP	T	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WHSC1	7468	broad.mit.edu	37	4	1954929	1954929	+	Intron	SNP	C	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WT1	7490	broad.mit.edu	37	11	32433122	32433122	+	Intron	SNP	T	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XDH	7498	broad.mit.edu	37	2	31620329	31620329	+	Intron	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XIRP2	129446	broad.mit.edu	37	2	167760302	167760302	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XKR6	286046	broad.mit.edu	37	8	10856265	10856265	+	Intron	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XKR6	286046	broad.mit.edu	37	8	11011183	11011183	+	Intron	SNP	C	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XPC	7508	broad.mit.edu	37	3	14219367	14219367	+	Intron	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
YME1L1	10730	broad.mit.edu	37	10	27409636	27409636	+	Intron	SNP	C	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZBTB2	57621	broad.mit.edu	37	6	151694423	151694423	+	Intron	SNP	T	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZBTB40	9923	broad.mit.edu	37	1	22800356	22800356	+	Intron	SNP	C	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZCCHC16	340595	broad.mit.edu	37	X	111392649	111392649	+	Intron	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZCCHC16	340595	broad.mit.edu	37	X	111392781	111392781	+	Intron	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZCCHC5	203430	broad.mit.edu	37	X	77913915	77913915	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZEB1	6935	broad.mit.edu	37	10	31810697	31810697	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZEB2	9839	broad.mit.edu	37	2	145157219	145157219	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZFC3H1	196441	broad.mit.edu	37	12	72008545	72008545	+	Intron	SNP	G	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZFP28	140612	broad.mit.edu	37	19	57059327	57059327	+	Intron	SNP	C	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZFPM2	23414	broad.mit.edu	37	8	106814331	106814331	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZIM2	23619	broad.mit.edu	37	19	57293507	57293507	+	Intron	SNP	G	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZMAT4	79698	broad.mit.edu	37	8	40600534	40600534	+	Intron	SNP	C	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF236	7776	broad.mit.edu	37	18	74640002	74640002	+	Missense_Mutation	SNP	G	T	T	rs76679748	by1000genomes	TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF365	22891	broad.mit.edu	37	10	64393750	64393750	+	Intron	SNP	A	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF385B	151126	broad.mit.edu	37	2	180626969	180626969	+	Intron	SNP	T	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF385D	79750	broad.mit.edu	37	3	21782119	21782119	+	Intron	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF385D	79750	broad.mit.edu	37	3	21811749	21811749	+	Intron	SNP	G	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF385D	79750	broad.mit.edu	37	3	22109373	22109373	+	Intron	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF436	80818	broad.mit.edu	37	1	23693528	23693528	+	Intron	SNP	T	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF454	285676	broad.mit.edu	37	5	178373773	178373773	+	Intron	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF536	9745	broad.mit.edu	37	19	30886413	30886413	+	Intron	SNP	C	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF536	9745	broad.mit.edu	37	19	30957932	30957932	+	Intron	SNP	G	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF536	9745	broad.mit.edu	37	19	30995236	30995237	+	Intron	DNP	CC	AA	AA			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF536	9745	broad.mit.edu	37	19	31039049	31039049	+	Silent	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF536	9745	broad.mit.edu	37	19	31039059	31039059	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF536	9745	broad.mit.edu	37	19	31044582	31044582	+	Intron	SNP	C	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF540	163255	broad.mit.edu	37	19	38103085	38103085	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF586	54807	broad.mit.edu	37	19	58290168	58290168	+	Silent	SNP	G	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF608	57507	broad.mit.edu	37	5	124003225	124003225	+	Intron	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF616	90317	broad.mit.edu	37	19	52627435	52627435	+	Intron	SNP	T	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF620	253639	broad.mit.edu	37	3	40557709	40557709	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF620	253639	broad.mit.edu	37	3	40558265	40558265	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF716	441234	broad.mit.edu	37	7	57509956	57509956	+	5'UTR	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF777	27153	broad.mit.edu	37	7	149134032	149134033	+	Intron	DNP	CC	AT	AT			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF79	7633	broad.mit.edu	37	9	130206133	130206133	+	Intron	SNP	T	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF804B	219578	broad.mit.edu	37	7	88965765	88965765	+	Nonsense_Mutation	SNP	A	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF8	7554	broad.mit.edu	37	19	58805982	58805982	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZP4	57829	broad.mit.edu	37	1	238048421	238048421	+	Intron	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZUFSP	221302	broad.mit.edu	37	6	116972826	116972826	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	118620303	118620303	+	Intron	SNP	A	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	125159314	125159314	+	Intron	SNP	A	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	30993272	30993272	+	Intron	SNP	A	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	104780622	104780622	+	5'Flank	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	119349774	119349774	+	Intron	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	119397184	119397184	+	RNA	SNP	C	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	43600182	43600182	+	5'Flank	SNP	C	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	43602581	43602581	+	5'Flank	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	81981661	81981661	+	Intron	SNP	C	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	81996030	81996030	+	Intron	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	88159219	88159219	+	Intron	SNP	A	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	115200443	115200443	+	Intron	SNP	G	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	78614923	78614923	+	Intron	SNP	T	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	19619996	19619996	+	Intron	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	19620011	19620011	+	Intron	SNP	C	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	22373017	22373017	+	Intron	SNP	T	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	22447181	22447181	+	Intron	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	22480650	22480650	+	Intron	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	27859359	27859359	+	Intron	SNP	T	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	28129920	28129920	+	Intron	SNP	G	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	28137778	28137778	+	Intron	SNP	A	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	80773051	80773051	+	Intron	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	80829709	80829709	+	Intron	SNP	A	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	88629765	88629765	+	5'Flank	SNP	G	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	102304909	102304909	+	5'Flank	SNP	C	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	36007070	36007070	+	Intron	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	32277365	32277365	+	5'Flank	SNP	A	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	33013720	33013720	+	5'Flank	SNP	A	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	34981003	34981003	+	RNA	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	5385356	5385356	+	Intron	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	80877472	80877472	+	Intron	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	21731111	21731111	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	39564954	39564954	+	RNA	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	112444	112444	+	Intron	SNP	C	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	25033580	25033580	+	Intron	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	40097661	40097661	+	Intron	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	40192311	40192311	+	Intron	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	41958527	41958527	+	Intron	SNP	T	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	42085032	42085032	+	Intron	SNP	A	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	45074572	45074572	+	Intron	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	52776735	52776735	+	Intron	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	69207970	69207970	+	Intron	SNP	C	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	22782940	22782940	+	Intron	SNP	G	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	22786154	22786154	+	RNA	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	29083292	29083292	+	Intron	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	29109497	29109497	+	Intron	SNP	G	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	29174088	29174088	+	Intron	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	142623696	142623696	+	Intron	SNP	A	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	142626277	142626277	+	Intron	SNP	A	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	142626290	142626290	+	Intron	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	142649177	142649177	+	Intron	SNP	T	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	10141345	10141345	+	Intron	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	57159585	57159586	+	Intron	DNP	CC	GA	GA			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	59140026	59140026	+	Intron	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	7335630	7335630	+	Intron	SNP	G	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	10465932	10465932	+	Intron	SNP	C	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	19985923	19985923	+	Intron	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	20008380	20008380	+	Intron	SNP	C	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	22	48203553	48203553	+	Intron	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	145849850	145849850	+	Intron	SNP	C	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	181986460	181986460	+	5'Flank	SNP	C	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	186665733	186665733	+	Intron	SNP	T	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	3047189	3047189	+	Intron	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	4023398	4023398	+	5'Flank	SNP	T	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	65783343	65783343	+	Intron	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	66044255	66044255	+	Intron	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	7581555	7581555	+	Intron	SNP	T	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	78285901	78285901	+	Intron	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	78322844	78322844	+	Intron	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	78672937	78672937	+	Intron	SNP	A	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	8299888	8299888	+	Intron	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	89967107	89967107	+	Intron	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	90126680	90126680	+	Intron	SNP	G	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	90186516	90186516	+	Intron	SNP	G	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	90228953	90228953	+	Intron	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	118299586	118299586	+	Intron	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	137495514	137495514	+	Intron	SNP	G	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	22423090	22423090	+	5'Flank	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	6699608	6699608	+	Intron	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	82214747	82214747	+	Intron	SNP	T	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	105590690	105590690	+	Intron	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	130755841	130755841	+	Intron	SNP	A	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	135248611	135248611	+	5'Flank	SNP	G	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	135249842	135249842	+	5'Flank	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	13837188	13837188	+	Intron	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	14983508	14983508	+	Intron	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	182057854	182057854	+	Intron	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	182069660	182069660	+	Intron	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	182955615	182955615	+	Intron	SNP	T	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	190820638	190820638	+	Intron	SNP	G	T	T	rs4043034		TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	33921849	33921849	+	Intron	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	58009616	58009617	+	Intron	DNP	GG	TT	TT			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	58307299	58307299	+	Intron	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	80196101	80196101	+	Intron	SNP	T	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	104328090	104328090	+	Intron	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	12731682	12731682	+	Intron	SNP	G	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	12737747	12737748	+	Intron	DEL	AT	-	-			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	152156674	152156674	+	Intron	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	152299003	152299003	+	Intron	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	152299109	152299109	+	Intron	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	152310852	152310852	+	Intron	SNP	G	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	163918710	163918710	+	Intron	SNP	G	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	17844944	17844944	+	Intron	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	20802338	20802338	+	Intron	DEL	A	-	-	rs141941317		TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	3464392	3464392	+	Intron	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	88219420	88219420	+	Intron	SNP	T	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	127115146	127115146	+	Intron	SNP	A	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	2251040	2251040	+	Intron	SNP	T	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	68599065	68599065	+	5'Flank	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	9797806	9797806	+	Intron	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	9799204	9799204	+	Intron	SNP	A	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	123946821	123946821	+	Intron	SNP	A	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	142119596	142119596	+	Intron	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	142190617	142190617	+	Intron	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	142377208	142377208	+	Intron	SNP	T	C	C	rs77190735	byFrequency;by1000genomes	TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	142377217	142377217	+	Intron	SNP	T	C	C	rs78862237	byFrequency;by1000genomes	TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	38393805	38393805	+	Intron	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	73304766	73304766	+	Intron	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	73367592	73367592	+	Intron	SNP	T	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	80723239	80723239	+	Intron	SNP	A	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	94161830	94161830	+	Intron	SNP	A	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	108935571	108935571	+	Intron	SNP	A	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	109004418	109004418	+	Intron	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	109359700	109359700	+	Intron	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	109394923	109394923	+	Intron	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	23634440	23634440	+	Intron	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	38593706	38593706	+	Intron	SNP	T	G	G			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	M	13412	13412	+	RNA	SNP	T	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	47582472	47582472	+	Intron	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
