Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer
A2BP1	54715	broad.mit.edu	37	16	7191969	7191969	+	Intron	SNP	C	G	G			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
A2BP1	54715	broad.mit.edu	37	16	7331905	7331905	+	Intron	SNP	A	T	T			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
A2BP1	54715	broad.mit.edu	37	16	7383001	7383001	+	Intron	SNP	G	T	T			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
A2BP1	54715	broad.mit.edu	37	16	7714869	7714870	+	Intron	DNP	GG	AT	AT			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCB5	340273	broad.mit.edu	37	7	20782578	20782578	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABI3BP	25890	broad.mit.edu	37	3	100568898	100568898	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACAN	176	broad.mit.edu	37	15	89398511	89398511	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACBD5	91452	broad.mit.edu	37	10	27508756	27508756	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACCN1	40	broad.mit.edu	37	17	31808930	31808930	+	Intron	SNP	C	G	G			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACOT12	134526	broad.mit.edu	37	5	80626271	80626271	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACRC	93953	broad.mit.edu	37	X	70812449	70812449	+	Intron	DEL	T	-	-	rs71886942		TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACTRT1	139741	broad.mit.edu	37	X	127185705	127185705	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM12	8038	broad.mit.edu	37	10	127812212	127812212	+	Intron	SNP	G	T	T			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM12	8038	broad.mit.edu	37	10	127833310	127833310	+	Intron	SNP	A	G	G			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM12	8038	broad.mit.edu	37	10	127846867	127846867	+	Intron	SNP	G	T	T	rs80101828	byFrequency;by1000genomes	TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM12	8038	broad.mit.edu	37	10	128002178	128002181	+	Intron	DEL	ATCT	-	-	rs5788780		TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM6	8755	broad.mit.edu	37	14	106135082	106135082	+	Intron	SNP	C	G	G			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM6	8755	broad.mit.edu	37	14	106994468	106994468	+	Intron	SNP	C	A	A			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTSL3	57188	broad.mit.edu	37	15	84363878	84363878	+	Intron	SNP	T	G	G	rs116918999	by1000genomes	TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADD3	120	broad.mit.edu	37	10	111890202	111890202	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADD3	120	broad.mit.edu	37	10	111890285	111890285	+	Intron	SNP	G	C	C			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AFF3	3899	broad.mit.edu	37	2	100453903	100453903	+	Intron	SNP	C	A	A			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AGBL4	84871	broad.mit.edu	37	1	49019665	49019665	+	Intron	SNP	G	A	A			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AKAP6	9472	broad.mit.edu	37	14	33290934	33290934	+	Silent	SNP	G	T	T			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AKIRIN2	55122	broad.mit.edu	37	6	88387800	88387800	+	Intron	SNP	A	C	C			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AKR1B10	57016	broad.mit.edu	37	7	134216948	134216948	+	Intron	SNP	G	T	T			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AKR7A2	8574	broad.mit.edu	37	1	19633560	19633560	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANK1	286	broad.mit.edu	37	8	41522670	41522670	+	Intron	SNP	C	G	G			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKRD19	138649	broad.mit.edu	37	9	95646901	95646901	+	RNA	SNP	C	T	T			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKRD29	147463	broad.mit.edu	37	18	21228942	21228942	+	Intron	SNP	G	T	T			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AP1G1	164	broad.mit.edu	37	16	71787790	71787790	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AP4E1	23431	broad.mit.edu	37	15	51293309	51293309	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
APOBEC1	339	broad.mit.edu	37	12	7803594	7803594	+	Intron	SNP	C	A	A			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AQR	9716	broad.mit.edu	37	15	35210473	35210473	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGEF6	9459	broad.mit.edu	37	X	135768072	135768072	+	Intron	SNP	T	C	C			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGEF6	9459	broad.mit.edu	37	X	135770096	135770096	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGEF6	9459	broad.mit.edu	37	X	135789374	135789374	+	Intron	SNP	C	A	A			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARMCX3	51566	broad.mit.edu	37	X	100879829	100879829	+	5'UTR	SNP	C	A	A			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARNTL2	56938	broad.mit.edu	37	12	27571174	27571174	+	Intron	DEL	C	-	-			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASTN1	460	broad.mit.edu	37	1	177133464	177133464	+	Intron	SNP	G	T	T			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASXL2	55252	broad.mit.edu	37	2	26029277	26029277	+	Intron	SNP	A	G	G			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASXL3	80816	broad.mit.edu	37	18	31294811	31294811	+	Intron	SNP	G	T	T			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATG2B	55102	broad.mit.edu	37	14	96761865	96761865	+	Silent	SNP	T	A	A			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATM	472	broad.mit.edu	37	11	108175416	108175416	+	Missense_Mutation	SNP	T	G	G			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP11B	23200	broad.mit.edu	37	3	182598641	182598641	+	Intron	SNP	A	G	G			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP11C	286410	broad.mit.edu	37	X	138880578	138880578	+	Intron	SNP	C	A	A			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP4A	495	broad.mit.edu	37	19	36050049	36050049	+	Silent	SNP	G	A	A			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AUTS2	26053	broad.mit.edu	37	7	69808931	69808931	+	Intron	SNP	G	A	A			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AVL9	23080	broad.mit.edu	37	7	32609734	32609734	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
B3GALTL	145173	broad.mit.edu	37	13	31848718	31848718	+	Missense_Mutation	SNP	G	T	T	rs34830061	byFrequency;by1000genomes	TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BAGE2	85319	broad.mit.edu	37	21	11052818	11052818	+	Intron	SNP	C	T	T			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BAGE2	85319	broad.mit.edu	37	21	11077295	11077295	+	Intron	SNP	C	T	T	rs112451076		TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BANP	54971	broad.mit.edu	37	16	88048941	88048941	+	Intron	SNP	G	A	A			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BBS7	55212	broad.mit.edu	37	4	122791422	122791422	+	Intron	SNP	C	A	A			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BEND2	139105	broad.mit.edu	37	X	18222163	18222163	+	Intron	SNP	C	A	A			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BHMT2	23743	broad.mit.edu	37	5	78379105	78379105	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BMP6	654	broad.mit.edu	37	6	7786028	7786028	+	Intron	SNP	C	T	T			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BNC1	646	broad.mit.edu	37	15	83926700	83926700	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BOD1L	259282	broad.mit.edu	37	4	13614670	13614670	+	Intron	SNP	C	A	A			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BPTF	2186	broad.mit.edu	37	17	65907022	65907022	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BRCA2	675	broad.mit.edu	37	13	32906434	32906434	+	Silent	SNP	A	T	T			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BRWD3	254065	broad.mit.edu	37	X	79999863	79999863	+	Intron	SNP	T	A	A			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BTBD16	118663	broad.mit.edu	37	10	124054067	124054068	+	Intron	INS	-	CA	CA	rs144614162	by1000genomes	TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BTBD7	55727	broad.mit.edu	37	14	93792131	93792131	+	Intron	SNP	G	A	A			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BTN2A1	11120	broad.mit.edu	37	6	26467861	26467861	+	Intron	SNP	G	C	C			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C10orf11	83938	broad.mit.edu	37	10	77700245	77700245	+	Intron	SNP	A	G	G	rs115133269	by1000genomes	TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C10orf71	118461	broad.mit.edu	37	10	50531470	50531470	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C10orf72	196740	broad.mit.edu	37	10	50256688	50256688	+	Intron	DEL	A	-	-			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C14orf101	54916	broad.mit.edu	37	14	57078984	57078984	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C16orf75	116028	broad.mit.edu	37	16	11420814	11420814	+	Intron	SNP	A	G	G			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C17orf54	283982	broad.mit.edu	37	17	71772322	71772322	+	Intron	SNP	G	T	T			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C18orf1	753	broad.mit.edu	37	18	13645521	13645521	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C19orf18	147685	broad.mit.edu	37	19	58483981	58483981	+	Intron	SNP	A	T	T			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf129	80133	broad.mit.edu	37	1	170973560	170973560	+	Intron	DEL	C	-	-			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C2orf78	388960	broad.mit.edu	37	2	74043608	74043608	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C4BPA	722	broad.mit.edu	37	1	207286344	207286344	+	Splice_Site	SNP	A	C	C			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C5orf41	153222	broad.mit.edu	37	5	172537372	172537372	+	Intron	SNP	A	G	G			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C6orf103	79747	broad.mit.edu	37	6	147109743	147109743	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C6orf138	442213	broad.mit.edu	37	6	47846929	47846929	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C6orf191	253582	broad.mit.edu	37	6	130164648	130164648	+	Intron	SNP	A	G	G			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C8orf80	389643	broad.mit.edu	37	8	27925799	27925799	+	Silent	SNP	G	A	A			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1E	777	broad.mit.edu	37	1	181650344	181650344	+	Intron	SNP	C	T	T	rs116778255	by1000genomes	TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CAPN10	11132	broad.mit.edu	37	2	241528836	241528836	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CBL	867	broad.mit.edu	37	11	119145632	119145632	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC147	159686	broad.mit.edu	37	10	106112557	106112557	+	5'Flank	SNP	G	T	T			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCNG1	900	broad.mit.edu	37	5	162869132	162869132	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCT6B	10693	broad.mit.edu	37	17	33255539	33255539	+	Intron	SNP	G	A	A			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD163L1	283316	broad.mit.edu	37	12	7586213	7586213	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD19	930	broad.mit.edu	37	16	28948872	28948872	+	Intron	DEL	G	-	-			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD1B	910	broad.mit.edu	37	1	158300026	158300026	+	Intron	SNP	G	T	T			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD207	50489	broad.mit.edu	37	2	71062787	71062788	+	Intron	INS	-	T	T			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD300LG	146894	broad.mit.edu	37	17	41926251	41926251	+	Silent	SNP	C	T	T			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD34	947	broad.mit.edu	37	1	208072370	208072370	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD5L	922	broad.mit.edu	37	1	157811458	157811458	+	Intron	SNP	A	T	T			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDCA7L	55536	broad.mit.edu	37	7	21941908	21941908	+	3'UTR	SNP	T	C	C			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH10	1008	broad.mit.edu	37	5	24488323	24488323	+	Intron	SNP	G	A	A			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH12	1010	broad.mit.edu	37	5	21882647	21882647	+	Intron	SNP	G	A	A			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH23	64072	broad.mit.edu	37	10	73511647	73511647	+	Intron	SNP	C	G	G			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDK15	65061	broad.mit.edu	37	2	202698423	202698425	+	Intron	DEL	TCT	-	-	rs66588345		TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDYL	9425	broad.mit.edu	37	6	4892621	4892621	+	Intron	SNP	T	C	C			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CELF4	56853	broad.mit.edu	37	18	34864111	34864111	+	Intron	SNP	C	T	T			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CENPE	1062	broad.mit.edu	37	4	104107059	104107059	+	Intron	SNP	T	A	A			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CEP170	9859	broad.mit.edu	37	1	243362479	243362479	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHAT	1103	broad.mit.edu	37	10	50901684	50901684	+	Intron	SNP	G	T	T			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLCA4	22802	broad.mit.edu	37	1	87041215	87041215	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLCN4	1183	broad.mit.edu	37	X	10155764	10155764	+	Intron	SNP	A	G	G			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLCN4	1183	broad.mit.edu	37	X	10188801	10188801	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLEC4A	50856	broad.mit.edu	37	12	8288251	8288251	+	Silent	SNP	A	G	G			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLGN	1047	broad.mit.edu	37	4	141330967	141330967	+	Intron	SNP	C	A	A			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLMN	79789	broad.mit.edu	37	14	95682072	95682072	+	Splice_Site	SNP	T	A	A			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTN5	53942	broad.mit.edu	37	11	100069148	100069149	+	Intron	DEL	AC	-	-	rs145416402		TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTNAP2	26047	broad.mit.edu	37	7	147797364	147797365	+	Intron	INS	-	C	C	rs144583549	by1000genomes	TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL11A1	1301	broad.mit.edu	37	1	103400166	103400166	+	Intron	SNP	A	T	T			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL24A1	255631	broad.mit.edu	37	1	86304322	86304322	+	Splice_Site	SNP	C	T	T			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL6A6	131873	broad.mit.edu	37	3	130300341	130300341	+	Intron	SNP	G	T	T			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL9A1	1297	broad.mit.edu	37	6	71003934	71003934	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COPS7B	64708	broad.mit.edu	37	2	232648954	232648955	+	5'Flank	DNP	GC	AT	AT			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPA1	1357	broad.mit.edu	37	7	130020972	130020972	+	Silent	SNP	G	A	A			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPA3	1359	broad.mit.edu	37	3	148597578	148597578	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPE	1363	broad.mit.edu	37	4	166325212	166325212	+	Intron	SNP	C	A	A			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPNE3	8895	broad.mit.edu	37	8	87563479	87563479	+	Intron	SNP	A	T	T			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CRX	1406	broad.mit.edu	37	19	48343114	48343114	+	Missense_Mutation	SNP	G	T	T	rs138146799		TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CRYL1	51084	broad.mit.edu	37	13	20987407	20987407	+	Intron	SNP	C	A	A			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSF2RA	1438	broad.mit.edu	37	X	1414372	1414372	+	Intron	SNP	C	A	A			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSHL1	1444	broad.mit.edu	37	17	61987508	61987508	+	Intron	SNP	G	A	A			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD1	64478	broad.mit.edu	37	8	3047572	3047572	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD1	64478	broad.mit.edu	37	8	4757507	4757507	+	Intron	SNP	C	A	A			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD2	114784	broad.mit.edu	37	1	34383799	34383799	+	Silent	SNP	G	T	T			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSN1S1	1446	broad.mit.edu	37	4	70803490	70803490	+	Intron	SNP	T	C	C			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CT45A1	541466	broad.mit.edu	37	X	134856845	134856845	+	3'UTR	SNP	A	G	G			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CXorf41	139212	broad.mit.edu	37	X	106465909	106465913	+	Intron	DEL	TTTTC	-	-			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP4F2	8529	broad.mit.edu	37	19	15994914	15994914	+	Intron	SNP	G	T	T			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DAB1	1600	broad.mit.edu	37	1	58114306	58114306	+	Intron	SNP	C	A	A			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCHS1	8642	broad.mit.edu	37	11	6647186	6647186	+	Silent	SNP	T	A	A			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCUN1D2	55208	broad.mit.edu	37	13	114138487	114138487	+	Intron	SNP	T	A	A			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCUN1D3	123879	broad.mit.edu	37	16	20873760	20873760	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DDR2	4921	broad.mit.edu	37	1	162688969	162688969	+	Intron	SNP	G	C	C			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DDX60L	91351	broad.mit.edu	37	4	169377245	169377245	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DENND1A	57706	broad.mit.edu	37	9	126663639	126663639	+	Intron	SNP	C	A	A			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DENND5B	160518	broad.mit.edu	37	12	31737076	31737076	+	Intron	SNP	T	A	A			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DGKG	1608	broad.mit.edu	37	3	186024608	186024608	+	Intron	SNP	G	T	T			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DHX40	79665	broad.mit.edu	37	17	57650386	57650386	+	Intron	SNP	G	T	T			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DIDO1	11083	broad.mit.edu	37	20	61513366	61513366	+	Silent	SNP	C	A	A			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DIP2A	23181	broad.mit.edu	37	21	47974225	47974225	+	Intron	SNP	G	C	C			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DLG2	1740	broad.mit.edu	37	11	83357652	83357652	+	Intron	SNP	G	T	T			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DLGAP1	9229	broad.mit.edu	37	18	3879466	3879466	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DMD	1756	broad.mit.edu	37	X	31719666	31719666	+	Intron	SNP	G	C	C			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH17	8632	broad.mit.edu	37	17	76498745	76498745	+	Intron	SNP	G	C	C			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH5	1767	broad.mit.edu	37	5	13754481	13754481	+	Intron	SNP	C	A	A			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH5	1767	broad.mit.edu	37	5	13758741	13758741	+	Intron	SNP	A	G	G			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH9	1770	broad.mit.edu	37	17	11550333	11550333	+	Intron	SNP	G	T	T			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNASE2B	58511	broad.mit.edu	37	1	84876500	84876500	+	Intron	SNP	T	C	C			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNMT3B	1789	broad.mit.edu	37	20	31368194	31368194	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DOCK1	1793	broad.mit.edu	37	10	128788711	128788711	+	Intron	SNP	C	T	T			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DOCK2	1794	broad.mit.edu	37	5	169443016	169443016	+	Intron	SNP	C	A	A			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DSC3	1825	broad.mit.edu	37	18	28602406	28602406	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DSG3	1830	broad.mit.edu	37	18	29036401	29036401	+	Splice_Site	SNP	A	T	T			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DUSP27	92235	broad.mit.edu	37	1	167096156	167096156	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DYNC1H1	1778	broad.mit.edu	37	14	102505474	102505474	+	Silent	SNP	C	T	T			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DZIP3	9666	broad.mit.edu	37	3	108344739	108344739	+	Silent	SNP	C	A	A	rs140722866		TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EAPP	55837	broad.mit.edu	37	14	34994132	34994132	+	Intron	SNP	A	G	G			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EDA	1896	broad.mit.edu	37	X	68921172	68921172	+	Intron	SNP	G	A	A			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EFTUD1	79631	broad.mit.edu	37	15	82523322	82523322	+	Intron	SNP	G	C	C			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ELK1	2002	broad.mit.edu	37	X	47496438	47496438	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ELMO1	9844	broad.mit.edu	37	7	37284104	37284104	+	Intron	SNP	A	T	T			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EMP2	2013	broad.mit.edu	37	16	10641527	10641527	+	5'UTR	SNP	G	A	A			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EMP3	2014	broad.mit.edu	37	19	48830831	48830831	+	Silent	SNP	G	T	T	rs139549534		TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPHA3	2042	broad.mit.edu	37	3	89521514	89521514	+	Intron	SNP	T	A	A			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPHA7	2045	broad.mit.edu	37	6	93956625	93956625	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPS8	2059	broad.mit.edu	37	12	15822286	15822286	+	Intron	SNP	T	A	A			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ERBB2IP	55914	broad.mit.edu	37	5	65350250	65350250	+	Missense_Mutation	SNP	A	T	T	rs137933401	byFrequency;by1000genomes	TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ETV7	51513	broad.mit.edu	37	6	36334711	36334711	+	Silent	SNP	C	G	G			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
F11R	50848	broad.mit.edu	37	1	160970066	160970066	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAF2	23197	broad.mit.edu	37	5	175906377	175906381	+	Intron	DEL	AAAAT	-	-			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM155B	27112	broad.mit.edu	37	X	68725627	68725627	+	Frame_Shift_Del	DEL	C	-	-			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM155B	27112	broad.mit.edu	37	X	68749571	68749571	+	Silent	SNP	G	A	A			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM198A	729085	broad.mit.edu	37	3	43035702	43035702	+	Intron	DEL	G	-	-	rs35121502		TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM19A2	338811	broad.mit.edu	37	12	62173928	62173929	+	Intron	INS	-	A	A	rs148724922	by1000genomes	TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM47A	158724	broad.mit.edu	37	X	34149363	34149363	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM47A	158724	broad.mit.edu	37	X	34150181	34150181	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM66D	100132923	broad.mit.edu	37	8	11986971	11986971	+	Intron	SNP	G	T	T			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM66D	100132923	broad.mit.edu	37	8	12401082	12401082	+	Intron	DEL	G	-	-			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM66D	100132923	broad.mit.edu	37	8	12418496	12418496	+	Intron	SNP	C	G	G	rs79216471	by1000genomes	TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FARS2	10667	broad.mit.edu	37	6	5285978	5285978	+	Intron	SNP	G	T	T			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBN2	2201	broad.mit.edu	37	5	127686693	127686693	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBN3	84467	broad.mit.edu	37	19	8154858	8154858	+	Intron	SNP	G	A	A			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBXL17	64839	broad.mit.edu	37	5	107559933	107559933	+	Intron	DEL	G	-	-			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FCGR2C	9103	broad.mit.edu	37	1	161559303	161559303	+	Intron	SNP	G	A	A			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FGD1	2245	broad.mit.edu	37	X	54472781	54472781	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FGF14	2259	broad.mit.edu	37	13	102454253	102454253	+	Intron	SNP	C	A	A			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLG	2312	broad.mit.edu	37	1	152285700	152285700	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLNB	2317	broad.mit.edu	37	3	58095863	58095863	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FMO9P	116123	broad.mit.edu	37	1	166591210	166591210	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FMR1NB	158521	broad.mit.edu	37	X	147090334	147090335	+	Intron	DNP	GG	TT	TT			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FN1	2335	broad.mit.edu	37	2	216295507	216295507	+	Nonsense_Mutation	SNP	G	A	A			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FNIP2	57600	broad.mit.edu	37	4	159817052	159817052	+	Intron	SNP	G	C	C			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FOXP1	27086	broad.mit.edu	37	3	71461155	71461155	+	Intron	SNP	G	C	C			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FRG1B	284802	broad.mit.edu	37	20	29609691	29609691	+	5'Flank	SNP	T	G	G	rs113384559		TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FRG1B	284802	broad.mit.edu	37	20	29649922	29649922	+	Intron	SNP	C	T	T			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FRYL	285527	broad.mit.edu	37	4	48564880	48564880	+	Intron	SNP	A	G	G			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FSTL4	23105	broad.mit.edu	37	5	132540690	132540690	+	Intron	DEL	T	-	-			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FYB	2533	broad.mit.edu	37	5	39202804	39202804	+	Nonsense_Mutation	SNP	C	A	A			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GART	2618	broad.mit.edu	37	21	34877985	34877985	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GCOM1	145781	broad.mit.edu	37	15	58006742	58006742	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GFM1	85476	broad.mit.edu	37	3	158408161	158408161	+	Intron	SNP	G	C	C			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GOLGA3	2802	broad.mit.edu	37	12	133353502	133353502	+	Intron	SNP	C	G	G			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GOLGA4	2803	broad.mit.edu	37	3	37343688	37343688	+	Missense_Mutation	SNP	G	A	A	rs141780526	by1000genomes	TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GOLGA4	2803	broad.mit.edu	37	3	37370607	37370607	+	Intron	SNP	C	G	G			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPA33	10223	broad.mit.edu	37	1	167058414	167058414	+	Intron	SNP	C	A	A			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRIK3	2899	broad.mit.edu	37	1	37389673	37389673	+	Intron	SNP	C	G	G			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRIN2B	2904	broad.mit.edu	37	12	14018911	14018911	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRIPAP1	56850	broad.mit.edu	37	X	48832305	48832305	+	Intron	SNP	G	T	T			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRK4	2868	broad.mit.edu	37	4	2990509	2990509	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GTPBP2	54676	broad.mit.edu	37	6	43593175	43593175	+	Silent	SNP	G	A	A			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GUCY2D	3000	broad.mit.edu	37	17	7918200	7918200	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GUSBP1	728411	broad.mit.edu	37	5	21539615	21539616	+	Intron	INS	-	TA	TA	rs143282782	by1000genomes	TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
H2BFM	286436	broad.mit.edu	37	X	103294617	103294617	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HAS1	3036	broad.mit.edu	37	19	52216511	52216511	+	3'UTR	SNP	C	T	T			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HBM	3042	broad.mit.edu	37	16	216613	216613	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HDC	3067	broad.mit.edu	37	15	50546714	50546714	+	Intron	SNP	T	A	A			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HEATR7B2	133558	broad.mit.edu	37	5	41018009	41018009	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HERC1	8925	broad.mit.edu	37	15	63926227	63926227	+	Intron	SNP	G	A	A			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HIF3A	64344	broad.mit.edu	37	19	46812639	46812639	+	Intron	SNP	G	A	A			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HK3	3101	broad.mit.edu	37	5	176310847	176310847	+	Silent	SNP	G	A	A			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HLTF	6596	broad.mit.edu	37	3	148750077	148750077	+	Missense_Mutation	SNP	G	A	A	rs144381721	by1000genomes	TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HOXB1	3211	broad.mit.edu	37	17	46606949	46606949	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HRG	3273	broad.mit.edu	37	3	186395280	186395280	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IFNA14	3448	broad.mit.edu	37	9	21239770	21239770	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IFT122	55764	broad.mit.edu	37	3	129236289	129236289	+	Intron	SNP	A	C	C			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IGLON5	402665	broad.mit.edu	37	19	51828509	51828509	+	Intron	SNP	G	A	A			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IGSF1	3547	broad.mit.edu	37	X	130415733	130415733	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IGSF21	84966	broad.mit.edu	37	1	18692124	18692124	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL12RB2	3595	broad.mit.edu	37	1	67792502	67792502	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL13RA2	3598	broad.mit.edu	37	X	114245312	114245312	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL1F5	26525	broad.mit.edu	37	2	113819152	113819153	+	Intron	INS	-	AT	AT	rs142039683	by1000genomes	TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL1RAPL1	11141	broad.mit.edu	37	X	29442872	29442872	+	Intron	SNP	G	C	C			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL1RL1	9173	broad.mit.edu	37	2	102964714	102964714	+	Intron	SNP	A	G	G			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL7R	3575	broad.mit.edu	37	5	35871120	35871120	+	Intron	SNP	T	A	A			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IMPG1	3617	broad.mit.edu	37	6	76720794	76720795	+	Intron	DNP	GG	CT	CT			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
INPP4A	3631	broad.mit.edu	37	2	99181316	99181316	+	Intron	DEL	T	-	-	rs3214545		TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IPP	3652	broad.mit.edu	37	1	46179937	46179938	+	Nonsense_Mutation	DNP	TC	CA	CA			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IQGAP3	128239	broad.mit.edu	37	1	156503601	156503601	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITIH5L	347365	broad.mit.edu	37	X	54776249	54776249	+	3'UTR	SNP	C	G	G			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITK	3702	broad.mit.edu	37	5	156608054	156608054	+	Silent	SNP	T	C	C			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
JAK1	3716	broad.mit.edu	37	1	65310713	65310713	+	Intron	SNP	G	A	A			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNA2	3737	broad.mit.edu	37	1	111146839	111146839	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNG4	93107	broad.mit.edu	37	16	84256651	84256651	+	Intron	SNP	C	A	A			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNH1	3756	broad.mit.edu	37	1	211263912	211263912	+	Nonsense_Mutation	SNP	G	T	T			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNQ3	3786	broad.mit.edu	37	8	133317588	133317588	+	Intron	SNP	G	T	T			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNU1	157855	broad.mit.edu	37	8	36766765	36766765	+	Intron	SNP	C	A	A			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KDR	3791	broad.mit.edu	37	4	55963852	55963852	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA0020	9933	broad.mit.edu	37	9	2820023	2820023	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA0232	9778	broad.mit.edu	37	4	6873323	6873323	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA0556	23247	broad.mit.edu	37	16	27610080	27610080	+	Intron	SNP	C	T	T			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA0556	23247	broad.mit.edu	37	16	27788315	27788315	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA0802	23255	broad.mit.edu	37	18	8824940	8824940	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA0947	23379	broad.mit.edu	37	5	5429424	5429424	+	Intron	SNP	A	C	C			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1383	54627	broad.mit.edu	37	1	232942878	232942878	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1529	57653	broad.mit.edu	37	9	100127887	100127887	+	Intron	SNP	A	T	T			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1598	57698	broad.mit.edu	37	10	118708345	118708345	+	Intron	SNP	C	T	T			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF1B	23095	broad.mit.edu	37	1	10394830	10394830	+	Intron	SNP	A	T	T			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF21B	23046	broad.mit.edu	37	1	200956012	200956012	+	Missense_Mutation	SNP	G	T	T	rs79881792		TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIRREL3	84623	broad.mit.edu	37	11	126824318	126824318	+	Intron	SNP	A	G	G			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLHL13	90293	broad.mit.edu	37	X	117043455	117043455	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRAS	3845	broad.mit.edu	37	12	25398282	25398282	+	Missense_Mutation	SNP	C	A	A	rs121913535		TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRAS	3845	broad.mit.edu	37	12	25398321	25398321	+	5'UTR	SNP	T	C	C			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRT13	3860	broad.mit.edu	37	17	39661878	39661878	+	5'Flank	SNP	A	G	G			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRT4	3851	broad.mit.edu	37	12	53205732	53205732	+	Silent	SNP	G	T	T			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRTAP15-1	254950	broad.mit.edu	37	21	31812895	31812895	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRTAP5-5	439915	broad.mit.edu	37	11	1651191	1651199	+	In_Frame_Del	DEL	GGCTGTGGA	-	-	rs144216147		TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAIR1	3903	broad.mit.edu	37	19	54868136	54868136	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMB4	22798	broad.mit.edu	37	7	107692477	107692477	+	Intron	SNP	T	C	C			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LANCL3	347404	broad.mit.edu	37	X	37489591	37489591	+	Intron	SNP	A	C	C			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LCORL	254251	broad.mit.edu	37	4	17964540	17964541	+	Intron	DEL	TG	-	-			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LGALS13	29124	broad.mit.edu	37	19	40095876	40095876	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LGALS13	29124	broad.mit.edu	37	19	40098080	40098080	+	3'UTR	SNP	C	T	T			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LIG3	3980	broad.mit.edu	37	17	33326409	33326409	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LILRA2	11027	broad.mit.edu	37	19	55085904	55085904	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LMOD3	56203	broad.mit.edu	37	3	69171195	69171195	+	Intron	SNP	A	T	T			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC100132288	100132288	broad.mit.edu	37	21	9935494	9935494	+	Intron	SNP	A	G	G			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC401052	401052	broad.mit.edu	37	3	10049235	10049235	+	Nonsense_Mutation	SNP	G	T	T			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC442308	442308	broad.mit.edu	37	7	55714458	55714458	+	RNA	SNP	G	C	C			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC550643	550643	broad.mit.edu	37	X	56789164	56789164	+	Intron	SNP	T	C	C			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC644669	644669	broad.mit.edu	37	18	15316704	15316704	+	RNA	SNP	G	T	T			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC650368	650368	broad.mit.edu	37	11	3429841	3429841	+	Intron	SNP	G	A	A			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOXHD1	125336	broad.mit.edu	37	18	44122843	44122843	+	Intron	SNP	G	C	C			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LPHN2	23266	broad.mit.edu	37	1	82188519	82188519	+	Intron	SNP	G	T	T			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LPHN2	23266	broad.mit.edu	37	1	82372971	82372971	+	Intron	SNP	T	A	A			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LPHN2	23266	broad.mit.edu	37	1	82436122	82436122	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LPP	4026	broad.mit.edu	37	3	188295546	188295549	+	Intron	DEL	TTCG	-	-	rs72048204		TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRFN2	57497	broad.mit.edu	37	6	40493677	40493677	+	Intron	SNP	C	T	T			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRFN5	145581	broad.mit.edu	37	14	42360493	42360493	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP4	4038	broad.mit.edu	37	11	46908161	46908161	+	Intron	SNP	G	A	A			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRTM3	347731	broad.mit.edu	37	10	68688316	68688316	+	Intron	SNP	C	A	A			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LSAMP	4045	broad.mit.edu	37	3	115765173	115765173	+	Intron	SNP	A	G	G			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LY6G6F	259215	broad.mit.edu	37	6	31682891	31682891	+	Intron	SNP	T	A	A			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LY75	4065	broad.mit.edu	37	2	160691982	160691982	+	Intron	SNP	T	A	A			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAEL	84944	broad.mit.edu	37	1	166962128	166962128	+	Intron	SNP	T	G	G			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAGEA5	4104	broad.mit.edu	37	X	151283311	151283311	+	3'UTR	SNP	C	A	A			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAGEA6	4105	broad.mit.edu	37	X	151869625	151869626	+	Missense_Mutation	DNP	CC	AG	AG			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAGEC1	9947	broad.mit.edu	37	X	140992842	140992842	+	5'UTR	SNP	C	G	G			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAGEC1	9947	broad.mit.edu	37	X	140995522	140995522	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAGI3	260425	broad.mit.edu	37	1	114226575	114226575	+	Nonsense_Mutation	SNP	G	A	A			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAMDC2	256691	broad.mit.edu	37	9	72723099	72723099	+	Intron	SNP	C	G	G			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAN1A2	10905	broad.mit.edu	37	1	118039517	118039517	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAP2K6	5608	broad.mit.edu	37	17	67452980	67452980	+	Intron	SNP	T	A	A			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAP7D2	256714	broad.mit.edu	37	X	20044112	20044112	+	Intron	SNP	G	A	A			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAP7D3	79649	broad.mit.edu	37	X	135313655	135313655	+	Intron	SNP	T	A	A			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAPK8IP1	9479	broad.mit.edu	37	11	45924191	45924191	+	Silent	SNP	C	T	T	rs138625751		TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAPKAPK2	9261	broad.mit.edu	37	1	206906050	206906050	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MCF2	4168	broad.mit.edu	37	X	138711785	138711785	+	Intron	SNP	G	T	T			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MDFIC	29969	broad.mit.edu	37	7	114591401	114591401	+	Intron	DEL	A	-	-	rs77532545		TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MED6	10001	broad.mit.edu	37	14	71059804	71059804	+	Intron	SNP	T	C	C			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MIR1244	100302285	broad.mit.edu	37	12	9392696	9392696	+	5'Flank	SNP	C	A	A			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MIR1274A	100302199	broad.mit.edu	37	5	41475765	41475765	+	RNA	SNP	C	T	T			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MIR1290	100302276	broad.mit.edu	37	1	19223575	19223575	+	RNA	SNP	C	A	A			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MIR544	664613	broad.mit.edu	37	14	101515008	101515008	+	RNA	SNP	A	G	G			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MIR770	768222	broad.mit.edu	37	14	101318813	101318813	+	RNA	SNP	G	T	T			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MNDA	4332	broad.mit.edu	37	1	158815369	158815369	+	Intron	SNP	C	A	A			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MORC1	27136	broad.mit.edu	37	3	108764189	108764190	+	Intron	INS	-	T	T	rs141226472	by1000genomes	TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MORC4	79710	broad.mit.edu	37	X	106219857	106219857	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MPPED2	744	broad.mit.edu	37	11	30490385	30490385	+	Intron	SNP	C	A	A			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MPRIP	23164	broad.mit.edu	37	17	17075991	17075991	+	Intron	SNP	A	T	T			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MRVI1	10335	broad.mit.edu	37	11	10605073	10605073	+	Intron	SNP	G	T	T			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTMR6	9107	broad.mit.edu	37	13	25835922	25835922	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTMR8	55613	broad.mit.edu	37	X	63615351	63615351	+	5'Flank	SNP	C	A	A			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC16	94025	broad.mit.edu	37	19	9080421	9080422	+	Intron	DNP	AG	GT	GT			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC20	200958	broad.mit.edu	37	3	195461856	195461856	+	3'UTR	SNP	C	T	T	rs140268940	by1000genomes	TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH4	4622	broad.mit.edu	37	17	10368833	10368833	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH6	4624	broad.mit.edu	37	14	23863473	23863473	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO3B	140469	broad.mit.edu	37	2	171034992	171034992	+	Intron	SNP	G	T	T			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NAGA	4668	broad.mit.edu	37	22	42464516	42464516	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NAV2	89797	broad.mit.edu	37	11	19462993	19462993	+	Intron	SNP	A	G	G			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBPF9	400818	broad.mit.edu	37	1	145085808	145085809	+	Intron	INS	-	T	T	rs146743627		TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBPF9	400818	broad.mit.edu	37	1	145126177	145126177	+	Intron	SNP	G	A	A			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBR1	4077	broad.mit.edu	37	17	41341032	41341032	+	Intron	SNP	A	C	C			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NDST4	64579	broad.mit.edu	37	4	115856324	115856324	+	Intron	SNP	G	T	T			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NEDD4	4734	broad.mit.edu	37	15	56148449	56148449	+	Intron	SNP	G	T	T			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NELL1	4745	broad.mit.edu	37	11	20805255	20805255	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NELL1	4745	broad.mit.edu	37	11	21451649	21451649	+	Intron	SNP	C	T	T			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NET1	10276	broad.mit.edu	37	10	5498644	5498644	+	Missense_Mutation	SNP	T	G	G			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NETO1	81832	broad.mit.edu	37	18	70417732	70417732	+	Missense_Mutation	SNP	C	A	A	rs140307788	byFrequency	TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NF1P1	440225	broad.mit.edu	37	15	21136641	21136641	+	5'Flank	SNP	T	C	C			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NFATC4	4776	broad.mit.edu	37	14	24839231	24839231	+	Silent	SNP	T	C	C			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NHLH2	4808	broad.mit.edu	37	1	116380682	116380682	+	Silent	SNP	C	A	A			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NOL10	79954	broad.mit.edu	37	2	10729579	10729579	+	Intron	SNP	C	G	G			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NR1I2	8856	broad.mit.edu	37	3	119535812	119535812	+	Intron	SNP	C	A	A			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRXN1	9378	broad.mit.edu	37	2	50631293	50631293	+	Intron	DEL	T	-	-	rs67474218		TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRXN3	9369	broad.mit.edu	37	14	78887267	78887267	+	Intron	SNP	G	A	A			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRXN3	9369	broad.mit.edu	37	14	79423671	79423671	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NSUN2	54888	broad.mit.edu	37	5	6616984	6616984	+	Intron	SNP	T	A	A			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NTRK3	4916	broad.mit.edu	37	15	88679694	88679694	+	Intron	SNP	C	T	T			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NXPH1	30010	broad.mit.edu	37	7	8641162	8641162	+	Intron	SNP	G	T	T			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OBP2A	29991	broad.mit.edu	37	9	138439035	138439035	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OBP2B	29989	broad.mit.edu	37	9	136083636	136083636	+	Intron	SNP	G	T	T			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OPHN1	4983	broad.mit.edu	37	X	67291135	67291135	+	Intron	SNP	T	C	C			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR13C3	138803	broad.mit.edu	37	9	107298670	107298670	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2L13	284521	broad.mit.edu	37	1	248099459	248099459	+	5'Flank	SNP	C	T	T			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2T3	343173	broad.mit.edu	37	1	248637525	248637525	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4N4	283694	broad.mit.edu	37	15	22382663	22382663	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4N5	390437	broad.mit.edu	37	14	20611982	20611982	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR51B5	282763	broad.mit.edu	37	11	5364598	5364598	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR5I1	10798	broad.mit.edu	37	11	55703852	55703852	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR5P2	120065	broad.mit.edu	37	11	7818426	7818426	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR5R1	219479	broad.mit.edu	37	11	56185534	56185534	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR6K2	81448	broad.mit.edu	37	1	158669686	158669686	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR6V1	346517	broad.mit.edu	37	7	142749650	142749650	+	Silent	SNP	A	T	T			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR9Q2	219957	broad.mit.edu	37	11	57957847	57957847	+	5'Flank	SNP	G	C	C			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
P2RX1	5023	broad.mit.edu	37	17	3803116	3803116	+	Intron	SNP	C	A	A			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PABPC1P2	728773	broad.mit.edu	37	2	147346092	147346092	+	Silent	SNP	T	C	C			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PABPC5	140886	broad.mit.edu	37	X	90690938	90690938	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAH	5053	broad.mit.edu	37	12	103298583	103298583	+	Intron	SNP	A	T	T			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAK3	5063	broad.mit.edu	37	X	110344683	110344683	+	Intron	SNP	G	T	T			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PALLD	23022	broad.mit.edu	37	4	169632119	169632120	+	Intron	DEL	TG	-	-	rs66609742		TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAOX	196743	broad.mit.edu	37	10	135202325	135202359	+	Intron	DEL	GTCATCCCGGGGCTCTCTTTCTCCATGCAGGTCTG	-	-	rs144417516	by1000genomes	TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAPPA2	60676	broad.mit.edu	37	1	176526298	176526298	+	Silent	SNP	T	A	A			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PARD3	56288	broad.mit.edu	37	10	34661507	34661507	+	Intron	SNP	C	A	A			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PARK2	5071	broad.mit.edu	37	6	161980026	161980026	+	Intron	SNP	A	G	G			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAX2	5076	broad.mit.edu	37	10	102568895	102568895	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH11X	27328	broad.mit.edu	37	X	91133015	91133015	+	Silent	SNP	C	A	A			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH11X	27328	broad.mit.edu	37	X	91873562	91873562	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH11X	27328	broad.mit.edu	37	X	91873578	91873578	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH19	57526	broad.mit.edu	37	X	99662938	99662938	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH7	5099	broad.mit.edu	37	4	30938670	30938671	+	Intron	DEL	AG	-	-	rs146745574		TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHB11	56125	broad.mit.edu	37	5	140579470	140579470	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHB17	54661	broad.mit.edu	37	5	140536976	140536976	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHB7	56129	broad.mit.edu	37	5	140553933	140553933	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHB7	56129	broad.mit.edu	37	5	140554452	140554452	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHB7	56129	broad.mit.edu	37	5	140554673	140554673	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHGA3	56112	broad.mit.edu	37	5	140723843	140723843	+	Missense_Mutation	SNP	C	G	G	rs143610564	by1000genomes	TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHGA7	56108	broad.mit.edu	37	5	140764399	140764399	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHGB3	56102	broad.mit.edu	37	5	140751832	140751832	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCNX	22990	broad.mit.edu	37	14	71502754	71502754	+	Intron	SNP	G	T	T			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCSK6	5046	broad.mit.edu	37	15	101983939	101983939	+	Intron	SNP	A	C	C			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDCL3	79031	broad.mit.edu	37	2	101183005	101183005	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDIA4	9601	broad.mit.edu	37	7	148702415	148702415	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDS5A	23244	broad.mit.edu	37	4	39975301	39975301	+	Intron	SNP	G	T	T			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDZD2	23037	broad.mit.edu	37	5	31725851	31725851	+	Intron	SNP	T	G	G			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDZD7	79955	broad.mit.edu	37	10	102783311	102783311	+	Nonsense_Mutation	SNP	C	A	A			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PGBD1	84547	broad.mit.edu	37	6	28266593	28266593	+	Intron	SNP	G	T	T			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PHKA1	5255	broad.mit.edu	37	X	71933542	71933542	+	Intron	SNP	A	C	C			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIK3R6	146850	broad.mit.edu	37	17	8741381	8741381	+	Intron	SNP	G	T	T			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PKHD1	5314	broad.mit.edu	37	6	51524198	51524198	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLAU	5328	broad.mit.edu	37	10	75676383	75676383	+	3'UTR	SNP	A	G	G	rs142117323	by1000genomes	TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLCL2	23228	broad.mit.edu	37	3	17056386	17056386	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLG	5340	broad.mit.edu	37	6	161132742	161132742	+	Intron	SNP	T	A	A			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLRG1	5356	broad.mit.edu	37	4	155467450	155467450	+	Intron	SNP	T	A	A			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POLA1	5422	broad.mit.edu	37	X	24753474	24753474	+	Intron	SNP	C	T	T			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POLD3	10714	broad.mit.edu	37	11	74331020	74331020	+	Intron	SNP	T	A	A			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POLI	11201	broad.mit.edu	37	18	51800270	51800270	+	Intron	SNP	G	C	C			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POM121L12	285877	broad.mit.edu	37	7	53103986	53103986	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PORCN	64840	broad.mit.edu	37	X	48374534	48374534	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPARGC1A	10891	broad.mit.edu	37	4	23815833	23815833	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPP4R4	57718	broad.mit.edu	37	14	94708066	94708066	+	Intron	SNP	C	T	T			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRAMEF2	65122	broad.mit.edu	37	1	12920987	12920987	+	Intron	SNP	G	T	T	rs72472701	by1000genomes	TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRICKLE3	4007	broad.mit.edu	37	X	49032947	49032947	+	Intron	SNP	G	T	T			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRIM2	5558	broad.mit.edu	37	6	57257551	57257551	+	Intron	SNP	T	A	A			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRKAG2	51422	broad.mit.edu	37	7	151487003	151487003	+	Intron	SNP	C	A	A			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRKCG	5582	broad.mit.edu	37	19	54401312	54401312	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRSS55	203074	broad.mit.edu	37	8	10390293	10390293	+	Intron	SNP	A	G	G			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSG5	5673	broad.mit.edu	37	19	43679211	43679211	+	Intron	SNP	G	C	C			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSG6	5675	broad.mit.edu	37	19	43421938	43421938	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSG6	5675	broad.mit.edu	37	19	43527443	43527443	+	Intron	SNP	T	C	C			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSMD2	5708	broad.mit.edu	37	3	184024429	184024429	+	Intron	SNP	T	A	A			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSMD3	5709	broad.mit.edu	37	17	38153787	38153787	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPN14	5784	broad.mit.edu	37	1	214576389	214576389	+	Intron	SNP	T	C	C			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRD	5789	broad.mit.edu	37	9	8528597	8528597	+	Silent	SNP	G	T	T			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRD	5789	broad.mit.edu	37	9	8713619	8713619	+	Intron	DEL	G	-	-			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRE	5791	broad.mit.edu	37	10	129868648	129868648	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRR	5801	broad.mit.edu	37	12	71158895	71158895	+	Intron	SNP	G	A	A			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAD54L	8438	broad.mit.edu	37	1	46736684	46736684	+	Intron	SNP	G	A	A			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RASSF2	9770	broad.mit.edu	37	20	4771116	4771116	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RBM10	8241	broad.mit.edu	37	X	47039331	47039331	+	Silent	SNP	G	T	T			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RBM22	55696	broad.mit.edu	37	5	150079948	150079948	+	Intron	SNP	T	C	C			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RBMX	27316	broad.mit.edu	37	X	135956613	135956613	+	Intron	SNP	T	A	A			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
REG1P	5969	broad.mit.edu	37	2	79365175	79365175	+	RNA	SNP	T	A	A			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
REG3G	130120	broad.mit.edu	37	2	79254794	79254794	+	Intron	SNP	G	T	T			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
REG3G	130120	broad.mit.edu	37	2	79255223	79255223	+	Intron	SNP	A	G	G			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
REG3G	130120	broad.mit.edu	37	2	79255403	79255403	+	3'UTR	SNP	G	T	T			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RELN	5649	broad.mit.edu	37	7	103191755	103191755	+	Intron	SNP	A	G	G			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
REPS2	9185	broad.mit.edu	37	X	17024252	17024252	+	Intron	SNP	A	T	T			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RFX4	5992	broad.mit.edu	37	12	107080945	107080946	+	Intron	INS	-	TC	TC	rs57545359		TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RGNEF	64283	broad.mit.edu	37	5	73136189	73136189	+	Intron	SNP	C	T	T			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RHD	6007	broad.mit.edu	37	1	25627384	25627384	+	Intron	SNP	T	G	G			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RHOH	399	broad.mit.edu	37	4	40245314	40245314	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RIMKLA	284716	broad.mit.edu	37	1	42880128	42880128	+	Intron	SNP	C	G	G			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RIOK2	55781	broad.mit.edu	37	5	96518691	96518691	+	Intron	SNP	T	G	G			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RIPPLY1	92129	broad.mit.edu	37	X	106145412	106145412	+	Silent	SNP	G	T	T			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RLN1	6013	broad.mit.edu	37	9	5339753	5339753	+	5'UTR	SNP	C	A	A			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RMND5A	64795	broad.mit.edu	37	2	87106025	87106025	+	Intron	SNP	G	T	T			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RMND5A	64795	broad.mit.edu	37	2	87569617	87569617	+	Intron	SNP	G	C	C			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNF144A	9781	broad.mit.edu	37	2	7059210	7059210	+	Intron	SNP	G	T	T			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ROCK1	6093	broad.mit.edu	37	18	18629104	18629105	+	Frame_Shift_Ins	INS	-	A	A	rs35810558		TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ROCK2	9475	broad.mit.edu	37	2	11356110	11356110	+	Intron	SNP	C	A	A			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ROR2	4920	broad.mit.edu	37	9	94486414	94486414	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPE65	6121	broad.mit.edu	37	1	68910071	68910071	+	Intron	SNP	C	A	A			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPH3A	22895	broad.mit.edu	37	12	113212624	113212624	+	Intron	SNP	T	G	G			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPL26L1	51121	broad.mit.edu	37	5	172396315	172396315	+	Intron	SNP	A	G	G			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RSRC1	51319	broad.mit.edu	37	3	157920997	157920997	+	Nonsense_Mutation	SNP	A	T	T			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RTP4	64108	broad.mit.edu	37	3	187086403	187086403	+	Intron	SNP	G	A	A			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR2	6262	broad.mit.edu	37	1	237586495	237586495	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR3	6263	broad.mit.edu	37	15	34129204	34129204	+	Intron	SNP	A	G	G			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SALL1	6299	broad.mit.edu	37	16	51174345	51174345	+	Silent	SNP	C	G	G			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SATL1	340562	broad.mit.edu	37	X	84363384	84363384	+	Silent	SNP	G	A	A			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCML2	10389	broad.mit.edu	37	X	18264765	18264765	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCN11A	11280	broad.mit.edu	37	3	38949398	38949399	+	Intron	DNP	GG	CT	CT			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCN3A	6328	broad.mit.edu	37	2	165971985	165971985	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SDCCAG8	10806	broad.mit.edu	37	1	243449736	243449736	+	Intron	SNP	G	T	T			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SDHAP1	255812	broad.mit.edu	37	3	195708977	195708977	+	Intron	SNP	C	G	G			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEC16B	89866	broad.mit.edu	37	1	177915690	177915690	+	Intron	SNP	C	A	A			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEMA3A	10371	broad.mit.edu	37	7	83592525	83592525	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SGOL2	151246	broad.mit.edu	37	2	201405757	201405758	+	Intron	INS	-	G	G	rs145769853	by1000genomes	TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SH2D2A	9047	broad.mit.edu	37	1	156785513	156785513	+	Intron	SNP	A	T	T			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SH3GL3	6457	broad.mit.edu	37	15	84286809	84286809	+	Intron	SNP	T	A	A			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SHOC2	8036	broad.mit.edu	37	10	112724437	112724437	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SIGLEC10	89790	broad.mit.edu	37	19	51918646	51918646	+	Silent	SNP	G	T	T			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC12A5	57468	broad.mit.edu	37	20	44672119	44672119	+	Intron	SNP	G	T	T			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC18A3	6572	broad.mit.edu	37	10	50819611	50819611	+	Missense_Mutation	SNP	C	A	A	rs145315435	byFrequency	TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC1A3	6507	broad.mit.edu	37	5	36686113	36686113	+	Intron	SNP	A	T	T			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC26A4	5172	broad.mit.edu	37	7	107350427	107350427	+	Intron	SNP	G	T	T			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC35F1	222553	broad.mit.edu	37	6	118588053	118588053	+	Intron	SNP	G	A	A			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC38A5	92745	broad.mit.edu	37	X	48318328	48318328	+	Intron	SNP	C	A	A			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC44A5	204962	broad.mit.edu	37	1	76069438	76069438	+	Intron	SNP	G	T	T	rs57844833		TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC6A19	340024	broad.mit.edu	37	5	1216989	1216989	+	Missense_Mutation	SNP	A	C	C			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC6A8	6535	broad.mit.edu	37	X	152956967	152956967	+	Missense_Mutation	SNP	C	G	G	rs143019641	byFrequency	TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMARCA4	6597	broad.mit.edu	37	19	11107209	11107209	+	Frame_Shift_Del	DEL	C	-	-			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNRPD1	6632	broad.mit.edu	37	18	19203777	19203777	+	Nonsense_Mutation	SNP	C	T	T			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNX24	28966	broad.mit.edu	37	5	122271419	122271419	+	Intron	DEL	A	-	-	rs10715896		TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPAG17	200162	broad.mit.edu	37	1	118565977	118565977	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPDYE7P	441251	broad.mit.edu	37	7	72341195	72341195	+	5'Flank	SNP	C	T	T			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPIN4	139886	broad.mit.edu	37	X	62570191	62570191	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPP2	6694	broad.mit.edu	37	2	234969392	234969393	+	Intron	DEL	CA	-	-	rs67670810		TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPTA1	6708	broad.mit.edu	37	1	158613238	158613238	+	Intron	SNP	G	A	A			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPTB	6710	broad.mit.edu	37	14	65239517	65239517	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SRGAP1	57522	broad.mit.edu	37	12	64437113	64437113	+	Intron	SNP	A	G	G			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SRPRB	58477	broad.mit.edu	37	3	133524896	133524896	+	Intron	SNP	G	T	T			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SRPX	8406	broad.mit.edu	37	X	38078429	38078429	+	Intron	SNP	G	C	C			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SSH2	85464	broad.mit.edu	37	17	28004720	28004720	+	Silent	SNP	G	A	A			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SSX3	10214	broad.mit.edu	37	X	48218339	48218339	+	5'Flank	SNP	A	T	T			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SSX7	280658	broad.mit.edu	37	X	52677138	52677139	+	Intron	DNP	AA	TC	TC			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SSX7	280658	broad.mit.edu	37	X	52682431	52682431	+	Intron	SNP	C	T	T			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STAMBP	10617	broad.mit.edu	37	2	74082519	74082519	+	Intron	SNP	G	T	T			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STON2	85439	broad.mit.edu	37	14	81864819	81864819	+	5'UTR	SNP	G	T	T			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STRA6	64220	broad.mit.edu	37	15	74473151	74473151	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STX1B	112755	broad.mit.edu	37	16	31012518	31012518	+	Intron	SNP	G	T	T			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STYK1	55359	broad.mit.edu	37	12	10772762	10772762	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SV2B	9899	broad.mit.edu	37	15	91832761	91832761	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SV2C	22987	broad.mit.edu	37	5	75505736	75505736	+	Intron	SNP	C	T	T			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SVEP1	79987	broad.mit.edu	37	9	113139414	113139414	+	Intron	SNP	G	T	T			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SVIL	6840	broad.mit.edu	37	10	29972700	29972700	+	Intron	SNP	C	A	A			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYF2	25949	broad.mit.edu	37	1	25554002	25554002	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYN2	6854	broad.mit.edu	37	3	12183349	12183350	+	Intron	DNP	TA	GT	GT			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYNE2	23224	broad.mit.edu	37	14	64468492	64468492	+	Intron	SNP	G	A	A			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYNJ1	8867	broad.mit.edu	37	21	34022390	34022390	+	Intron	SNP	C	A	A			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAB3	257397	broad.mit.edu	37	X	30873050	30873050	+	Silent	SNP	A	G	G			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TACC2	10579	broad.mit.edu	37	10	123974999	123975000	+	Intron	INS	-	C	C			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAF1L	138474	broad.mit.edu	37	9	32630458	32630458	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAS2R1	50834	broad.mit.edu	37	5	9630051	9630051	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBC1D24	57465	broad.mit.edu	37	16	2569756	2569756	+	3'UTR	SNP	G	T	T			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBC1D3C	414060	broad.mit.edu	37	17	34610863	34610863	+	Intron	SNP	G	T	T			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBX22	50945	broad.mit.edu	37	X	79282169	79282169	+	Intron	SNP	G	T	T			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TCN1	6947	broad.mit.edu	37	11	59620776	59620776	+	Silent	SNP	G	T	T			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TDRD5	163589	broad.mit.edu	37	1	179631373	179631373	+	Silent	SNP	C	T	T			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TECRL	253017	broad.mit.edu	37	4	65274942	65274942	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TFAP2A	7020	broad.mit.edu	37	6	10400917	10400917	+	Intron	SNP	C	A	A	rs111823265	by1000genomes	TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TFAP2B	7021	broad.mit.edu	37	6	50807860	50807860	+	Intron	SNP	C	G	G			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TGM5	9333	broad.mit.edu	37	15	43560195	43560195	+	5'Flank	SNP	C	A	A			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TG	7038	broad.mit.edu	37	8	133906050	133906050	+	Silent	SNP	G	A	A			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
THOC2	57187	broad.mit.edu	37	X	122757644	122757644	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
THRAP3	9967	broad.mit.edu	37	1	36754665	36754665	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
THRA	7067	broad.mit.edu	37	17	38245627	38245627	+	Intron	SNP	G	T	T			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMC5	79838	broad.mit.edu	37	16	19501836	19501836	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMCO1	54499	broad.mit.edu	37	1	165788712	165788712	+	Intron	SNP	G	C	C			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEFF1	8577	broad.mit.edu	37	9	103323538	103323538	+	Intron	SNP	C	G	G			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEFF2	23671	broad.mit.edu	37	2	193059331	193059331	+	5'UTR	SNP	C	A	A			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM131	23505	broad.mit.edu	37	2	98475769	98475769	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM132B	114795	broad.mit.edu	37	12	125873315	125873315	+	Intron	SNP	G	T	T			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM132B	114795	broad.mit.edu	37	12	125959303	125959303	+	Intron	SNP	G	A	A			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM132D	121256	broad.mit.edu	37	12	129694579	129694579	+	Intron	SNP	C	A	A			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM17	200728	broad.mit.edu	37	2	62745024	62745024	+	Intron	SNP	A	G	G	rs137898431	by1000genomes	TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM195	392636	broad.mit.edu	37	7	15433714	15433714	+	Intron	SNP	A	T	T			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM209	84928	broad.mit.edu	37	7	129818491	129818491	+	Intron	SNP	C	A	A			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM2	23670	broad.mit.edu	37	9	74312964	74312964	+	Frame_Shift_Del	DEL	C	-	-	rs142314012	by1000genomes	TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM59	9528	broad.mit.edu	37	1	54511290	54511290	+	Intron	SNP	G	A	A			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM66	51669	broad.mit.edu	37	8	29927124	29927124	+	Intron	SNP	C	A	A			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMPRSS15	5651	broad.mit.edu	37	21	19716380	19716380	+	Intron	SNP	G	T	T			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNNT2	7139	broad.mit.edu	37	1	201335967	201335967	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNRC6C	57690	broad.mit.edu	37	17	76089667	76089667	+	Intron	SNP	G	C	C			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TP53TG5	27296	broad.mit.edu	37	20	44004176	44004176	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TP53	7157	broad.mit.edu	37	17	7577518	7577518	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPMT	7172	broad.mit.edu	37	6	18147926	18147926	+	Intron	SNP	C	A	A			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRAK1	22906	broad.mit.edu	37	3	42132947	42132947	+	5'UTR	SNP	A	G	G			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRAPPC5	126003	broad.mit.edu	37	19	7747434	7747434	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRAT1	50852	broad.mit.edu	37	3	108572676	108572676	+	Silent	SNP	C	T	T			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRHDE	29953	broad.mit.edu	37	12	72776997	72776997	+	Intron	SNP	A	T	T			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIM29	23650	broad.mit.edu	37	11	120007908	120007908	+	Intron	SNP	G	C	C			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIM33	51592	broad.mit.edu	37	1	114952806	114952807	+	Missense_Mutation	DNP	CT	AA	AA			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIML2	205860	broad.mit.edu	37	4	189027932	189027932	+	5'Flank	SNP	C	A	A			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPC1	7220	broad.mit.edu	37	3	142499778	142499778	+	Silent	SNP	G	T	T			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPM2	7226	broad.mit.edu	37	21	45784063	45784063	+	Silent	SNP	C	G	G			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRYX3	136541	broad.mit.edu	37	7	141955425	141955425	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TSPAN7	7102	broad.mit.edu	37	X	38533540	38533540	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTK	7272	broad.mit.edu	37	6	80720491	80720492	+	Intron	INS	-	GA	GA	rs66832270		TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBR3	130507	broad.mit.edu	37	2	170938409	170938409	+	3'UTR	SNP	A	G	G			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UFSP2	55325	broad.mit.edu	37	4	186339797	186339797	+	Silent	SNP	G	T	T			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UGT3A2	167127	broad.mit.edu	37	5	36069064	36069064	+	5'Flank	SNP	A	C	C			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UNC80	285175	broad.mit.edu	37	2	210858055	210858055	+	Missense_Mutation	SNP	T	G	G			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USH2A	7399	broad.mit.edu	37	1	216256892	216256892	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP10	9100	broad.mit.edu	37	16	84808876	84808876	+	Intron	SNP	G	A	A			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP54	159195	broad.mit.edu	37	10	75300682	75300682	+	Intron	SNP	G	A	A			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	111130313	111130313	+	IGR	SNP	G	A	A			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	112088844	112088844	+	IGR	DEL	T	-	-			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	112105406	112105406	+	IGR	SNP	A	G	G			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	127132957	127132957	+	IGR	SNP	C	T	T			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	130699079	130699079	+	IGR	SNP	A	T	T			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	135428007	135428007	+	IGR	SNP	A	G	G			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	30960415	30960415	+	IGR	SNP	C	A	A			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	42653428	42653428	+	IGR	SNP	C	A	A			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	43206234	43206234	+	IGR	SNP	C	T	T			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	50462159	50462159	+	IGR	SNP	G	T	T			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	58447586	58447586	+	IGR	SNP	C	G	G			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	75693512	75693512	+	IGR	SNP	C	A	A			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	77266244	77266245	+	IGR	INS	-	G	G	rs72515514	by1000genomes	TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	8338680	8338680	+	IGR	SNP	C	A	A			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	114796640	114796640	+	IGR	SNP	A	C	C			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	116069141	116069158	+	IGR	DEL	GGAGGAGGAGGAGGAGGT	-	-	rs11273765		TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	124134836	124134836	+	IGR	SNP	A	G	G			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	130488962	130488962	+	IGR	SNP	A	T	T			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	45609438	45609438	+	IGR	SNP	G	A	A	rs146315149	by1000genomes	TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	4744247	4744247	+	IGR	SNP	G	T	T			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	51483468	51483468	+	IGR	SNP	T	A	A			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	51484052	51484052	+	IGR	SNP	C	G	G			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	55277906	55277906	+	IGR	SNP	A	T	T			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	56143746	56143746	+	IGR	SNP	T	A	A			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	57617728	57617728	+	IGR	SNP	A	G	G			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	71377231	71377231	+	IGR	SNP	T	C	C			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	103526102	103526126	+	IGR	DEL	CTGGGGTCCTGAAATGGCTCCCTAA	-	-	rs111481333		TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	104846470	104846470	+	IGR	SNP	C	A	A			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	111399056	111399056	+	IGR	SNP	C	A	A			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	120321774	120321774	+	IGR	SNP	G	A	A			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	127828747	127828747	+	IGR	SNP	G	T	T			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	128092067	128092067	+	IGR	SNP	C	G	G			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	128108881	128108881	+	IGR	SNP	C	A	A			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	128112499	128112499	+	IGR	SNP	T	A	A			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	132024492	132024494	+	IGR	DEL	TGA	-	-			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	13692739	13692739	+	IGR	DEL	C	-	-			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	15982612	15982613	+	IGR	INS	-	AC	AC	rs147413569	by1000genomes	TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	30575949	30575949	+	IGR	SNP	T	A	A			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	37883330	37883330	+	IGR	SNP	C	T	T			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	54199021	54199021	+	IGR	SNP	C	G	G			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	67905442	67905445	+	IGR	DEL	GTGT	-	-	rs72179507		TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	57387570	57387570	+	IGR	SNP	C	A	A			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	101173499	101173499	+	IGR	SNP	G	A	A			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	19719911	19719911	+	IGR	SNP	G	T	T			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	19806873	19806873	+	IGR	SNP	C	A	A			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	20228477	20228477	+	IGR	SNP	C	A	A			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	20648191	20648191	+	IGR	SNP	G	C	C			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	68082499	68082499	+	IGR	SNP	G	T	T			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	69655074	69655074	+	IGR	SNP	C	A	A			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	90203592	90203592	+	IGR	SNP	C	A	A			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	99300845	99300845	+	IGR	SNP	T	G	G			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	102489991	102489991	+	IGR	SNP	C	G	G			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	20434352	20434352	+	IGR	SNP	C	T	T			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	22433959	22433959	+	IGR	SNP	G	T	T			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	23468471	23468471	+	IGR	SNP	C	T	T			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	53313126	53313126	+	IGR	SNP	G	A	A			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	58241525	58241525	+	IGR	SNP	C	A	A			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	69349079	69349079	+	IGR	SNP	T	A	A			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	91216819	91216819	+	IGR	SNP	T	C	C			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	97149518	97149518	+	IGR	SNP	G	T	T			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	18188191	18188191	+	IGR	SNP	A	T	T			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	32077759	32077759	+	IGR	SNP	G	A	A			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	32478953	32478953	+	IGR	SNP	G	T	T			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	32817417	32817418	+	IGR	INS	-	TC	TC	rs138071874		TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	32848114	32848114	+	IGR	SNP	T	C	C			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	33380173	33380173	+	IGR	SNP	C	A	A			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	33740649	33740649	+	IGR	SNP	C	A	A			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	33950256	33950256	+	IGR	SNP	C	T	T			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	34327605	34327605	+	IGR	SNP	A	G	G			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	73348480	73348480	+	IGR	SNP	T	C	C			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	18965634	18965634	+	IGR	SNP	C	G	G			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	21548660	21548662	+	IGR	DEL	TCT	-	-	rs147918165		TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	22215495	22215495	+	IGR	SNP	G	T	T			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	25284160	25284160	+	IGR	SNP	A	T	T			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	25284173	25284173	+	IGR	SNP	T	C	C			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	34433649	34433649	+	IGR	SNP	T	A	A			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	75224232	75224232	+	IGR	SNP	C	G	G			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	13152164	13152164	+	IGR	SNP	G	T	T			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	15165552	15165552	+	IGR	SNP	G	A	A	rs141819943	by1000genomes	TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	26232356	26232356	+	IGR	SNP	A	G	G			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	47984910	47984910	+	IGR	SNP	C	A	A			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	832237	832237	+	IGR	SNP	C	A	A			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	29672993	29672994	+	IGR	DNP	CC	AG	AG			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	43801602	43801602	+	IGR	SNP	T	C	C			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	5377906	5377906	+	IGR	SNP	C	G	G			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	6881074	6881074	+	IGR	SNP	C	A	A			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	8912416	8912416	+	IGR	SNP	T	C	C			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	106433327	106433327	+	IGR	SNP	C	A	A			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	142540576	142540576	+	IGR	SNP	A	C	C			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	142543364	142543364	+	IGR	SNP	T	A	A			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	142564756	142564756	+	IGR	SNP	G	A	A			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	14482131	14482132	+	IGR	INS	-	TTC	TTC			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	149089815	149089815	+	IGR	SNP	C	T	T			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	150572952	150572952	+	IGR	SNP	C	A	A			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	158746274	158746274	+	IGR	SNP	A	G	G			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	163848430	163848430	+	IGR	SNP	G	A	A			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	166245325	166245325	+	IGR	SNP	C	A	A			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	175742738	175742738	+	IGR	DEL	T	-	-	rs34708168		TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	188512658	188512658	+	IGR	SNP	G	C	C			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	233993234	233993234	+	IGR	SNP	G	A	A			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	244496056	244496056	+	IGR	SNP	A	G	G			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	4951045	4951045	+	IGR	SNP	C	A	A			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	56894146	56894146	+	IGR	SNP	G	C	C			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	69167106	69167106	+	IGR	SNP	T	C	C			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	69604266	69604266	+	IGR	SNP	C	A	A			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	75310389	75310389	+	IGR	SNP	G	T	T			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	11825687	11825687	+	IGR	SNP	A	G	G			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	29605191	29605191	+	IGR	SNP	G	C	C	rs143937497	by1000genomes	TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	36313554	36313554	+	IGR	SNP	G	C	C			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	37982992	37982992	+	IGR	SNP	A	G	G			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	7672294	7672294	+	IGR	SNP	G	C	C			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	10120185	10120185	+	IGR	SNP	T	C	C			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	10141610	10141610	+	IGR	SNP	G	A	A			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	10707194	10707194	+	IGR	SNP	G	C	C			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	10719371	10719371	+	IGR	SNP	G	A	A			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	11126941	11126941	+	IGR	SNP	G	A	A			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	11128757	11128757	+	IGR	SNP	C	G	G			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	11134494	11134494	+	IGR	SNP	C	T	T	rs76368013		TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	21797784	21797784	+	IGR	SNP	C	T	T			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	9673867	9673867	+	IGR	SNP	C	T	T			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	9674209	9674209	+	IGR	SNP	G	A	A			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	9847431	9847431	+	IGR	SNP	C	G	G			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	9850485	9850485	+	IGR	SNP	T	C	C			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	22	27559188	27559188	+	IGR	SNP	A	G	G			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	22	35215146	35215146	+	IGR	SNP	A	C	C			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	22	48514207	48514207	+	IGR	SNP	A	G	G			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	103564806	103564807	+	IGR	DEL	AT	-	-	rs150636467		TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	117733364	117733364	+	IGR	SNP	A	G	G			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	118295935	118295935	+	IGR	SNP	G	T	T			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	130751184	130751184	+	IGR	SNP	G	A	A			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	131051834	131051834	+	IGR	SNP	A	T	T			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	131415009	131415009	+	IGR	SNP	G	T	T			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	132181823	132181823	+	IGR	SNP	C	A	A			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	132349741	132349741	+	IGR	DEL	T	-	-			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	14125668	14125668	+	IGR	DEL	A	-	-	rs112709004		TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	154525539	154525539	+	IGR	SNP	C	A	A			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	223035793	223035793	+	IGR	SNP	C	T	T			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	25446550	25446550	+	IGR	SNP	C	T	T			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	4066375	4066375	+	IGR	DEL	G	-	-			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	41005137	41005137	+	IGR	SNP	G	T	T			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	60101161	60101161	+	IGR	SNP	G	A	A			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	72042486	72042486	+	IGR	SNP	G	T	T			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	79276096	79276096	+	IGR	SNP	A	T	T			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	8123453	8123453	+	IGR	SNP	A	G	G			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	81424744	81424744	+	IGR	SNP	C	A	A			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	91800929	91800929	+	IGR	SNP	T	A	A			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	91936272	91936272	+	IGR	SNP	C	A	A			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	91944149	91944149	+	IGR	SNP	G	T	T			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	91975824	91975824	+	IGR	SNP	T	C	C			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	103017173	103017173	+	IGR	DEL	C	-	-			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	103436683	103436683	+	IGR	SNP	T	C	C			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	127143284	127143284	+	IGR	SNP	C	A	A			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	127195988	127195988	+	IGR	SNP	G	T	T			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	148051129	148051129	+	IGR	SNP	C	A	A			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	148704993	148704993	+	IGR	SNP	G	T	T			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	1637493	1637493	+	IGR	SNP	C	A	A			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	180206768	180206768	+	IGR	SNP	C	G	G			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	181149115	181149115	+	IGR	SNP	G	A	A			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	18581296	18581296	+	IGR	SNP	C	T	T			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	186491171	186491171	+	IGR	SNP	G	T	T			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	195725100	195725100	+	IGR	SNP	A	T	T			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	31497331	31497331	+	IGR	SNP	A	T	T			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	113378191	113378191	+	IGR	DEL	C	-	-			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	120728707	120728708	+	IGR	INS	-	AAACAC	AAACAC	rs146506932	by1000genomes	TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	121199614	121199615	+	IGR	INS	-	GA	GA	rs150066720	by1000genomes	TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	132347372	132347372	+	IGR	SNP	C	T	T			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	134427545	134427545	+	IGR	SNP	C	G	G			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	140349198	140349198	+	IGR	SNP	T	C	C			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	140349586	140349586	+	IGR	SNP	T	C	C			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	185230780	185230780	+	IGR	SNP	C	G	G			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	190198085	190198085	+	IGR	SNP	C	A	A	rs144412204	by1000genomes	TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	190560925	190560925	+	IGR	DEL	C	-	-	rs66936654		TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	190587050	190587050	+	IGR	SNP	C	A	A			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	191028327	191028328	+	IGR	DNP	AC	GA	GA			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	191028639	191028639	+	IGR	SNP	C	T	T			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	20125109	20125109	+	IGR	SNP	C	A	A			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	28825626	28825626	+	IGR	SNP	C	A	A			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	35183756	35183756	+	IGR	SNP	C	G	G			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	4086036	4086036	+	IGR	SNP	T	A	A			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	45275	45275	+	IGR	SNP	G	A	A			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	49316691	49316691	+	IGR	SNP	C	T	T	rs74318250		TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	49517105	49517105	+	IGR	SNP	C	A	A			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	55304216	55304216	+	IGR	SNP	A	G	G			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	9757279	9757279	+	IGR	SNP	C	T	T			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	122971875	122971875	+	IGR	SNP	C	T	T			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	172147420	172147420	+	IGR	SNP	G	A	A			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	174765250	174765252	+	IGR	DEL	CTT	-	-	rs143150127		TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	33502561	33502561	+	IGR	SNP	G	A	A			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	45136502	45136502	+	IGR	SNP	C	G	G			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	49414470	49414470	+	IGR	SNP	T	G	G			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	77081136	77081136	+	IGR	SNP	G	T	T			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	97466700	97466701	+	IGR	INS	-	T	T	rs150795605	by1000genomes	TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	13521740	13521740	+	IGR	SNP	C	A	A			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	16986120	16986120	+	IGR	SNP	C	A	A			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	22661272	22661273	+	IGR	DEL	AA	-	-	rs34688404		TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	3608527	3608527	+	IGR	DEL	C	-	-	rs56188206		TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	40725750	40725751	+	IGR	DNP	AG	GT	GT			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	51275232	51275232	+	IGR	SNP	G	T	T			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	51275299	51275299	+	IGR	SNP	G	T	T			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	54663085	54663086	+	IGR	INS	-	T	T	rs142110177	by1000genomes	TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	54896269	54896269	+	IGR	SNP	C	A	A			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	57997001	57997001	+	IGR	DEL	T	-	-	rs79923838		TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	67400809	67400809	+	IGR	SNP	C	G	G			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	70147790	70147790	+	IGR	SNP	G	A	A			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	99233563	99233563	+	IGR	SNP	C	A	A			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	150309596	150309596	+	IGR	SNP	A	T	T			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	25597661	25597662	+	IGR	INS	-	G	G	rs150219747	by1000genomes	TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	31546627	31546627	+	IGR	SNP	G	T	T			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	45471791	45471791	+	IGR	SNP	G	T	T			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	57128417	57128417	+	IGR	SNP	G	C	C			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	61825824	61825824	+	IGR	SNP	G	C	C			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	61829555	61829555	+	IGR	SNP	G	A	A	rs149896166	by1000genomes	TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	62693443	62693443	+	IGR	SNP	C	A	A			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	63039883	63039883	+	IGR	SNP	C	A	A			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	67894255	67894255	+	IGR	SNP	G	T	T			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	6974816	6974816	+	IGR	SNP	G	A	A			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	93935922	93935922	+	IGR	SNP	G	T	T			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	102423959	102423959	+	IGR	SNP	C	T	T	rs139025027	by1000genomes	TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	122708871	122708872	+	IGR	INS	-	G	G	rs148519158	by1000genomes	TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	123342899	123342900	+	IGR	DNP	CC	AT	AT			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	125449168	125449168	+	IGR	SNP	T	C	C			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	126630304	126630304	+	IGR	SNP	G	T	T			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	130741485	130741485	+	IGR	SNP	G	A	A			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	130741495	130741495	+	IGR	SNP	G	A	A			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	130741512	130741512	+	IGR	SNP	G	A	A			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	20769101	20769101	+	IGR	SNP	G	T	T			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	2218510	2218511	+	IGR	INS	-	G	G	rs148971808	by1000genomes	TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	36243837	36243837	+	IGR	SNP	G	A	A			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	37308297	37308297	+	IGR	SNP	T	C	C			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	43416603	43416603	+	IGR	SNP	C	A	A			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	47011941	47011941	+	IGR	SNP	C	A	A			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	5947419	5947419	+	IGR	SNP	G	T	T			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	78776450	78776450	+	IGR	SNP	G	T	T			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	88800811	88800811	+	IGR	SNP	G	T	T			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	88801209	88801209	+	IGR	SNP	T	A	A			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	91484651	91484651	+	IGR	SNP	C	A	A			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	98211547	98211547	+	IGR	SNP	T	G	G			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	117582602	117582602	+	IGR	SNP	C	T	T			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	120566128	120566128	+	IGR	SNP	T	G	G			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	27809745	27809745	+	IGR	SNP	T	A	A			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	2900277	2900277	+	IGR	SNP	G	T	T			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	35991505	35991505	+	IGR	SNP	G	T	T			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	66482046	66482046	+	IGR	SNP	T	A	A	rs139348043		TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	67324606	67324606	+	IGR	SNP	C	T	T			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	68403603	68403603	+	IGR	SNP	C	A	A			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	68420564	68420564	+	IGR	SNP	A	G	G	rs140798487		TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	68429237	68429237	+	IGR	SNP	T	A	A			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	68491070	68491070	+	IGR	SNP	T	G	G	rs1574083		TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	82901089	82901089	+	IGR	SNP	G	T	T			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	106803637	106803637	+	IGR	SNP	C	T	T			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	106815559	106815559	+	IGR	SNP	A	T	T			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	106845567	106845567	+	IGR	SNP	C	G	G			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	115126951	115126951	+	IGR	SNP	C	G	G			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	116640124	116640124	+	IGR	SNP	G	T	T			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	142594436	142594437	+	IGR	DEL	GC	-	-	rs58109999		TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	144711806	144711806	+	IGR	SNP	G	T	T			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	145098759	145098759	+	IGR	SNP	C	G	G			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	151910292	151910292	+	IGR	SNP	C	T	T			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	151976694	151976694	+	IGR	SNP	C	T	T			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	16216616	16216616	+	IGR	SNP	G	T	T			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	22996240	22996240	+	IGR	SNP	T	C	C			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	25663933	25663933	+	IGR	SNP	G	T	T			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	26540745	26540745	+	IGR	SNP	G	T	T			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	41795393	41795393	+	IGR	SNP	A	T	T			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	45590664	45590664	+	IGR	SNP	G	T	T			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	45772919	45772919	+	IGR	SNP	G	T	T			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	46278031	46278031	+	IGR	SNP	G	C	C			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	47273117	47273117	+	IGR	SNP	G	T	T			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	4753779	4753779	+	IGR	SNP	C	G	G			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	7618956	7618957	+	IGR	DNP	CC	AA	AA			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	78579639	78579639	+	IGR	SNP	C	T	T			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	82109698	82109698	+	IGR	SNP	C	T	T			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	83288862	83288862	+	IGR	SNP	G	A	A			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	85340717	85340717	+	IGR	SNP	G	T	T			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	859919	859919	+	IGR	SNP	G	T	T			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	Y	13428783	13428783	+	IGR	SNP	T	G	G			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VCAN	1462	broad.mit.edu	37	5	82786291	82786291	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VGLL3	389136	broad.mit.edu	37	3	87039757	87039757	+	Intron	SNP	C	A	A			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VWF	7450	broad.mit.edu	37	12	6199418	6199418	+	Intron	SNP	C	G	G			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR44	54521	broad.mit.edu	37	X	117570673	117570673	+	Silent	SNP	T	C	C			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDSUB1	151525	broad.mit.edu	37	2	160121803	160121804	+	Intron	DNP	AC	CA	CA	rs138412983	by1000genomes	TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WNK2	65268	broad.mit.edu	37	9	95972523	95972523	+	Intron	SNP	C	T	T			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WNK3	65267	broad.mit.edu	37	X	54334456	54334456	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WWC3	55841	broad.mit.edu	37	X	10102711	10102711	+	Intron	SNP	G	C	C			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WWC3	55841	broad.mit.edu	37	X	10109476	10109476	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XIRP2	129446	broad.mit.edu	37	2	168103802	168103802	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
YIPF6	286451	broad.mit.edu	37	X	67741159	67741159	+	Intron	SNP	C	A	A			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
YIPF7	285525	broad.mit.edu	37	4	44638008	44638008	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZCCHC5	203430	broad.mit.edu	37	X	77913900	77913900	+	Silent	SNP	T	A	A			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZDHHC18	84243	broad.mit.edu	37	1	27176877	27176877	+	Silent	SNP	C	G	G			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZEB1	6935	broad.mit.edu	37	10	31791480	31791480	+	Intron	SNP	G	T	T			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZFPM2	23414	broad.mit.edu	37	8	106431376	106431376	+	Silent	SNP	G	T	T			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF384	171017	broad.mit.edu	37	12	6786355	6786355	+	Intron	SNP	T	C	C			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF485	220992	broad.mit.edu	37	10	44101069	44101069	+	5'Flank	SNP	C	A	A			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF507	22847	broad.mit.edu	37	19	32873579	32873579	+	Intron	SNP	A	G	G			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF525	170958	broad.mit.edu	37	19	53886837	53886837	+	3'UTR	SNP	C	T	T			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF595	152687	broad.mit.edu	37	4	60868	60868	+	Intron	SNP	C	T	T			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF595	152687	broad.mit.edu	37	4	65052	65052	+	Intron	SNP	G	A	A			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF595	152687	broad.mit.edu	37	4	67359	67359	+	Intron	SNP	C	T	T			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF616	90317	broad.mit.edu	37	19	52633832	52633832	+	5'UTR	SNP	C	A	A			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF746	155061	broad.mit.edu	37	7	149191324	149191325	+	Frame_Shift_Ins	INS	-	C	C			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF800	168850	broad.mit.edu	37	7	127011773	127011773	+	3'UTR	SNP	T	G	G			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZP4	57829	broad.mit.edu	37	1	238048432	238048432	+	Intron	SNP	C	A	A			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZSCAN1	284312	broad.mit.edu	37	19	58551817	58551817	+	Splice_Site	SNP	G	C	C			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZSCAN2	54993	broad.mit.edu	37	15	85149258	85149258	+	Intron	SNP	C	G	G			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZSCAN5B	342933	broad.mit.edu	37	19	56701625	56701625	+	Silent	SNP	C	G	G			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZSCAN5B	342933	broad.mit.edu	37	19	56703226	56703226	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	17617576	17617576	+	Intron	SNP	G	A	A			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	22636307	22636307	+	Intron	SNP	T	A	A			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	57326495	57326495	+	Intron	SNP	G	C	C			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	102292950	102292950	+	Intron	SNP	C	A	A			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	20489372	20489372	+	Intron	SNP	A	G	G			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	20605071	20605071	+	Intron	SNP	C	A	A	rs139428089	by1000genomes	TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	20619303	20619303	+	Intron	SNP	T	C	C	rs148390146	by1000genomes	TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	25430909	25430910	+	Intron	DNP	GG	TT	TT			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	63889045	63889046	+	Intron	INS	-	T	T	rs144374170	by1000genomes	TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	87206109	87206109	+	Intron	SNP	G	A	A			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	20332094	20332094	+	RNA	SNP	C	T	T			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	37199396	37199396	+	Intron	SNP	C	G	G			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	52195687	52195687	+	Intron	SNP	A	G	G			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	142804885	142804885	+	Intron	DEL	A	-	-			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	142964424	142964424	+	Intron	SNP	G	A	A			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	143146880	143146880	+	Intron	SNP	T	A	A	rs75651787		TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	57156426	57156426	+	Intron	SNP	G	T	T			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	89185228	89185228	+	Intron	SNP	C	G	G			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	89189428	89189428	+	Intron	SNP	G	T	T	rs149784361		TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	89309375	89309375	+	Intron	SNP	G	T	T			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	90078162	90078162	+	RNA	SNP	C	A	A			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	90419194	90419194	+	Intron	SNP	C	G	G			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	90439962	90439962	+	Intron	SNP	A	G	G			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	185674775	185674775	+	5'Flank	SNP	C	A	A			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	75467470	75467470	+	5'Flank	SNP	C	A	A			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	134046317	134046317	+	Intron	SNP	G	A	A			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	135249389	135249389	+	5'Flank	SNP	G	T	T			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	13743201	13743201	+	Intron	SNP	T	A	A			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	33969928	33969928	+	Intron	SNP	C	G	G			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	127170413	127170413	+	Intron	SNP	C	A	A			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	100607646	100607646	+	Intron	DEL	T	-	-	rs4989163		TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	142168697	142168697	+	Intron	SNP	T	C	C			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	142176589	142176589	+	Intron	SNP	G	C	C			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	142471337	142471337	+	Intron	SNP	C	A	A			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	12426141	12426141	+	Intron	DEL	G	-	-			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	29638844	29638845	+	Intron	DNP	GG	AA	AA			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	66456966	66456966	+	RNA	SNP	C	A	A			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
