Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer
A2BP1	54715	broad.mit.edu	37	16	7726670	7726670	+	Intron	SNP	A	T	T			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
A2ML1	144568	broad.mit.edu	37	12	9013836	9013836	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABAT	18	broad.mit.edu	37	16	8841973	8841973	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABAT	18	broad.mit.edu	37	16	8870281	8870281	+	Silent	SNP	G	T	T			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCA7	10347	broad.mit.edu	37	19	1058968	1058968	+	Intron	DEL	G	-	-			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCG2	9429	broad.mit.edu	37	4	89052424	89052424	+	Intron	SNP	G	A	A			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABHD11	83451	broad.mit.edu	37	7	73150996	73150996	+	Silent	SNP	G	T	T			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABI3BP	25890	broad.mit.edu	37	3	100629974	100629974	+	Intron	SNP	T	C	C			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACBD4	79777	broad.mit.edu	37	17	43213883	43213883	+	Silent	SNP	C	T	T			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACP1	52	broad.mit.edu	37	2	277250	277250	+	Silent	SNP	G	T	T	rs55709515	byFrequency;by1000genomes	TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACSF3	197322	broad.mit.edu	37	16	89187217	89187217	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACTL6A	86	broad.mit.edu	37	3	179287794	179287794	+	Intron	SNP	G	T	T			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACVR1C	130399	broad.mit.edu	37	2	158390285	158390285	+	3'UTR	SNP	C	A	A			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM12	8038	broad.mit.edu	37	10	127759974	127759974	+	Intron	DEL	C	-	-			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM22	53616	broad.mit.edu	37	7	87822558	87822558	+	Intron	SNP	T	A	A			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM23	8745	broad.mit.edu	37	2	207406944	207406944	+	Intron	SNP	T	A	A			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM23	8745	broad.mit.edu	37	2	207422344	207422344	+	Intron	SNP	C	A	A			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM30	11085	broad.mit.edu	37	1	120436901	120436901	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM6	8755	broad.mit.edu	37	14	106494413	106494413	+	RNA	SNP	C	A	A			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM6	8755	broad.mit.edu	37	14	106790960	106790960	+	RNA	SNP	G	A	A			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM7	8756	broad.mit.edu	37	8	24349468	24349469	+	Frame_Shift_Del	DEL	CT	-	-			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS18	170692	broad.mit.edu	37	16	77390016	77390016	+	Intron	SNP	C	A	A			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADARB1	104	broad.mit.edu	37	21	46602546	46602546	+	Silent	SNP	A	G	G			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAT2	134637	broad.mit.edu	37	6	143754990	143754990	+	Silent	SNP	A	G	G			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADCY2	108	broad.mit.edu	37	5	7707123	7707123	+	Intron	SNP	C	G	G			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADK	132	broad.mit.edu	37	10	76287506	76287506	+	Intron	SNP	C	T	T			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AGBL1	123624	broad.mit.edu	37	15	87531454	87531454	+	Intron	SNP	C	A	A			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AHDC1	27245	broad.mit.edu	37	1	27876724	27876725	+	Frame_Shift_Ins	INS	-	T	T			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AIM1	202	broad.mit.edu	37	6	106992379	106992379	+	Intron	SNP	G	A	A			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AIM1	202	broad.mit.edu	37	6	106992417	106992417	+	Intron	SNP	G	A	A			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AIM1	202	broad.mit.edu	37	6	106992541	106992541	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AIM1	202	broad.mit.edu	37	6	106992892	106992892	+	Intron	SNP	G	A	A			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AK5	26289	broad.mit.edu	37	1	78001585	78001585	+	Silent	SNP	C	A	A	rs139378577	byFrequency	TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AKR1D1	6718	broad.mit.edu	37	7	137801300	137801300	+	Intron	SNP	C	A	A			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALDH1A2	8854	broad.mit.edu	37	15	58287209	58287209	+	Intron	SNP	T	C	C			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALS2CR12	130540	broad.mit.edu	37	2	202174129	202174129	+	Intron	SNP	T	A	A			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AMPD1	270	broad.mit.edu	37	1	115220124	115220124	+	Silent	SNP	C	T	T	rs141829342		TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANGPTL4	51129	broad.mit.edu	37	19	8429470	8429470	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKMY1	51281	broad.mit.edu	37	2	241463553	241463553	+	Silent	SNP	C	A	A			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKRD27	84079	broad.mit.edu	37	19	33122231	33122231	+	Intron	SNP	G	A	A			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKRD30A	91074	broad.mit.edu	37	10	37442585	37442585	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKRD36B	57730	broad.mit.edu	37	2	98175299	98175299	+	Silent	SNP	T	A	A			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANO3	63982	broad.mit.edu	37	11	26664849	26664849	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANTXR1	84168	broad.mit.edu	37	2	69298861	69298861	+	Intron	SNP	A	G	G			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANXA5	308	broad.mit.edu	37	4	122617728	122617728	+	Intron	SNP	G	A	A			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AP1B1	162	broad.mit.edu	37	22	29750760	29750760	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AP3B1	8546	broad.mit.edu	37	5	77396792	77396792	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
APBA1	320	broad.mit.edu	37	9	72047354	72047354	+	Intron	SNP	G	C	C			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
APC	324	broad.mit.edu	37	5	112174894	112174894	+	Silent	SNP	A	G	G			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
APOB48R	55911	broad.mit.edu	37	16	28508141	28508141	+	Silent	SNP	G	A	A			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
APOB	338	broad.mit.edu	37	2	21242544	21242544	+	Intron	SNP	C	A	A			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AQP7P1	375719	broad.mit.edu	37	9	67281782	67281782	+	RNA	SNP	G	T	T			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARG2	384	broad.mit.edu	37	14	68112271	68112271	+	Intron	SNP	G	T	T			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGAP11A	9824	broad.mit.edu	37	15	32912452	32912452	+	Intron	SNP	G	C	C			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGAP15	55843	broad.mit.edu	37	2	143973998	143973998	+	Nonsense_Mutation	SNP	G	T	T			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGEF19	128272	broad.mit.edu	37	1	16528322	16528322	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARID5B	84159	broad.mit.edu	37	10	63852789	63852789	+	Nonstop_Mutation	SNP	G	C	C			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARMC4	55130	broad.mit.edu	37	10	28270259	28270259	+	Intron	SNP	G	T	T			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARPC1B	10095	broad.mit.edu	37	7	98985774	98985774	+	Silent	SNP	G	A	A			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASB5	140458	broad.mit.edu	37	4	177143601	177143601	+	Intron	SNP	C	G	G			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASZ1	136991	broad.mit.edu	37	7	117062196	117062196	+	Intron	SNP	A	C	C			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATF2	1386	broad.mit.edu	37	2	175983098	175983098	+	Splice_Site	SNP	C	A	A			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATF6B	1388	broad.mit.edu	37	6	32095138	32095138	+	Intron	SNP	T	C	C			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP1A1	476	broad.mit.edu	37	1	116931735	116931735	+	Intron	SNP	C	T	T			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP5G2	517	broad.mit.edu	37	12	54070073	54070073	+	5'UTR	SNP	A	T	T			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP6V0A2	23545	broad.mit.edu	37	12	124235920	124235920	+	Intron	SNP	G	T	T			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATRNL1	26033	broad.mit.edu	37	10	116931129	116931129	+	Intron	SNP	A	T	T			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATRNL1	26033	broad.mit.edu	37	10	117040923	117040923	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BAGE2	85319	broad.mit.edu	37	21	11047436	11047436	+	Intron	SNP	C	T	T			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BAI3	577	broad.mit.edu	37	6	70071037	70071037	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BBS2	583	broad.mit.edu	37	16	56534696	56534696	+	Intron	SNP	T	A	A			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BBS7	55212	broad.mit.edu	37	4	122780265	122780265	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BCHE	590	broad.mit.edu	37	3	165547813	165547813	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BCKDHA	593	broad.mit.edu	37	19	41903322	41903322	+	5'Flank	SNP	G	T	T			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BCLAF1	9774	broad.mit.edu	37	6	136589176	136589176	+	Intron	SNP	C	G	G			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BCMO1	53630	broad.mit.edu	37	16	81295630	81295630	+	Intron	SNP	C	T	T			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BDP1	55814	broad.mit.edu	37	5	70858022	70858023	+	Intron	INS	-	A	A	rs75209090		TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BEND4	389206	broad.mit.edu	37	4	42145891	42145891	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BEST2	54831	broad.mit.edu	37	19	12866162	12866162	+	Intron	SNP	A	T	T			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BMP1	649	broad.mit.edu	37	8	22034084	22034084	+	Missense_Mutation	SNP	T	G	G			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BMP2K	55589	broad.mit.edu	37	4	79791871	79791871	+	Intron	SNP	G	A	A			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BMP2K	55589	broad.mit.edu	37	4	79792085	79792085	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BRPF3	27154	broad.mit.edu	37	6	36168792	36168792	+	Silent	SNP	C	T	T	rs142038497		TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BTBD16	118663	broad.mit.edu	37	10	124049435	124049435	+	Nonsense_Mutation	SNP	A	T	T			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BTK	695	broad.mit.edu	37	X	100629331	100629331	+	Intron	SNP	A	T	T			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C10orf82	143379	broad.mit.edu	37	10	118424187	118424187	+	Intron	SNP	T	C	C			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C11orf63	79864	broad.mit.edu	37	11	122830081	122830081	+	Silent	SNP	G	T	T			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C14orf135	64430	broad.mit.edu	37	14	60622663	60622663	+	Intron	SNP	G	A	A			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C15orf42	90381	broad.mit.edu	37	15	90135399	90135399	+	Silent	SNP	G	A	A			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C16orf93	90835	broad.mit.edu	37	16	30771821	30771821	+	Intron	SNP	A	C	C			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C17orf98	388381	broad.mit.edu	37	17	36991492	36991492	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C18orf34	374864	broad.mit.edu	37	18	30804957	30804957	+	Intron	SNP	C	A	A			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1D	10438	broad.mit.edu	37	2	68270278	68270278	+	Intron	SNP	T	C	C			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf110	339512	broad.mit.edu	37	1	162829265	162829265	+	Nonsense_Mutation	SNP	G	A	A			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf173	127254	broad.mit.edu	37	1	75038553	75038553	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf173	127254	broad.mit.edu	37	1	75107014	75107014	+	Splice_Site	SNP	C	T	T			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C20orf12	55184	broad.mit.edu	37	20	18401980	18401980	+	Intron	SNP	C	T	T			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C20orf186	149954	broad.mit.edu	37	20	31670915	31670915	+	Intron	SNP	G	T	T			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C2CD3	26005	broad.mit.edu	37	11	73824703	73824703	+	Intron	SNP	C	A	A			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C2orf80	389073	broad.mit.edu	37	2	209045447	209045447	+	Intron	SNP	G	T	T			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C4BPB	725	broad.mit.edu	37	1	207273326	207273326	+	3'UTR	SNP	C	A	A			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C4orf17	84103	broad.mit.edu	37	4	100458828	100458828	+	Silent	SNP	C	A	A			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C5orf42	65250	broad.mit.edu	37	5	37167372	37167372	+	Intron	SNP	T	C	C			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C5orf42	65250	broad.mit.edu	37	5	37210553	37210553	+	Intron	SNP	T	A	A			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C6orf170	221322	broad.mit.edu	37	6	121563386	121563386	+	Silent	SNP	A	G	G			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C6orf170	221322	broad.mit.edu	37	6	121642717	121642717	+	Intron	SNP	G	A	A			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C6orf221	154288	broad.mit.edu	37	6	74073076	74073076	+	Intron	SNP	G	A	A			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C6orf97	80129	broad.mit.edu	37	6	151907107	151907107	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C7	730	broad.mit.edu	37	5	40936367	40936367	+	Intron	SNP	C	G	G			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C7	730	broad.mit.edu	37	5	40967681	40967681	+	Intron	SNP	C	T	T			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C9	735	broad.mit.edu	37	5	39285304	39285304	+	Frame_Shift_Del	DEL	T	-	-			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C9orf43	257169	broad.mit.edu	37	9	116190310	116190310	+	Intron	SNP	A	T	T			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CA3	761	broad.mit.edu	37	8	86358355	86358355	+	Intron	SNP	A	G	G			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CA4	762	broad.mit.edu	37	17	58234210	58234210	+	Intron	SNP	G	A	A			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CAB39	51719	broad.mit.edu	37	2	231683215	231683215	+	Intron	SNP	G	A	A			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1G	8913	broad.mit.edu	37	17	48646649	48646649	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNB2	783	broad.mit.edu	37	10	18690929	18690929	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNB2	783	broad.mit.edu	37	10	18690999	18690999	+	Intron	SNP	T	C	C			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CADM1	23705	broad.mit.edu	37	11	115069179	115069179	+	Intron	SNP	T	C	C			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CADPS2	93664	broad.mit.edu	37	7	122001154	122001154	+	Intron	SNP	C	A	A			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CADPS2	93664	broad.mit.edu	37	7	122303304	122303304	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CALCR	799	broad.mit.edu	37	7	93106986	93106986	+	Intron	SNP	C	T	T			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CALR3	125972	broad.mit.edu	37	19	16591450	16591450	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC108	255101	broad.mit.edu	37	2	219892811	219892811	+	Intron	SNP	G	A	A			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC136	64753	broad.mit.edu	37	7	128444758	128444758	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC151	115948	broad.mit.edu	37	19	11534596	11534596	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC38	120935	broad.mit.edu	37	12	96265869	96265869	+	Intron	SNP	C	T	T			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC8	83987	broad.mit.edu	37	19	46915351	46915351	+	Silent	SNP	C	G	G			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCNDBP1	23582	broad.mit.edu	37	15	43482491	43482491	+	Intron	SNP	A	G	G			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCT6A	908	broad.mit.edu	37	7	56129515	56129515	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD97	976	broad.mit.edu	37	19	14501929	14501929	+	Intron	SNP	G	T	T			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDC42BPB	9578	broad.mit.edu	37	14	103430968	103430968	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDC5L	988	broad.mit.edu	37	6	44387332	44387332	+	Silent	SNP	C	T	T			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH17	1015	broad.mit.edu	37	8	95164221	95164221	+	Silent	SNP	C	T	T			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH17	1015	broad.mit.edu	37	8	95164334	95164334	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH8	1006	broad.mit.edu	37	16	61747904	61747904	+	Intron	SNP	G	C	C			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDKL2	8999	broad.mit.edu	37	4	76550981	76550981	+	Intron	SNP	G	T	T			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CECR7	100130418	broad.mit.edu	37	22	17528204	17528204	+	Intron	SNP	C	G	G			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CENPF	1063	broad.mit.edu	37	1	214816606	214816606	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CEP152	22995	broad.mit.edu	37	15	49031506	49031506	+	Intron	SNP	C	T	T			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CERKL	375298	broad.mit.edu	37	2	182514852	182514852	+	Intron	SNP	G	C	C			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CFB	629	broad.mit.edu	37	6	31915173	31915174	+	Frame_Shift_Ins	INS	-	C	C			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHD2	1106	broad.mit.edu	37	15	93510728	93510728	+	Missense_Mutation	SNP	A	C	C			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHD7	55636	broad.mit.edu	37	8	61774815	61774815	+	Nonsense_Mutation	SNP	C	T	T			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHRM2	1129	broad.mit.edu	37	7	136623310	136623310	+	Intron	SNP	G	A	A			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHRNE	1145	broad.mit.edu	37	17	4804455	4804455	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CKAP2L	150468	broad.mit.edu	37	2	113498264	113498264	+	Intron	SNP	C	T	T			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLDN19	149461	broad.mit.edu	37	1	43203813	43203813	+	Intron	SNP	C	A	A			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLDND2	125875	broad.mit.edu	37	19	51871909	51871909	+	5'UTR	SNP	A	C	C			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLEC4M	10332	broad.mit.edu	37	19	7828197	7828197	+	Silent	SNP	G	A	A			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLIP1	6249	broad.mit.edu	37	12	122862099	122862099	+	Nonsense_Mutation	SNP	G	C	C			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLRN1	7401	broad.mit.edu	37	3	150661736	150661736	+	Intron	SNP	G	T	T			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNGB3	54714	broad.mit.edu	37	8	87641372	87641372	+	Intron	SNP	A	G	G			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNOT4	4850	broad.mit.edu	37	7	135107146	135107146	+	Intron	SNP	A	T	T			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTN4	152330	broad.mit.edu	37	3	3095689	3095689	+	Intron	SNP	C	T	T			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTNAP5	129684	broad.mit.edu	37	2	125232469	125232469	+	Intron	SNP	C	A	A			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL11A1	1301	broad.mit.edu	37	1	103477844	103477844	+	Intron	SNP	C	G	G			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL14A1	7373	broad.mit.edu	37	8	121220565	121220565	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL16A1	1307	broad.mit.edu	37	1	32156786	32156786	+	Intron	SNP	C	A	A			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL22A1	169044	broad.mit.edu	37	8	139616916	139616916	+	Intron	SNP	G	T	T			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL4A3	1285	broad.mit.edu	37	2	228137670	228137670	+	Silent	SNP	G	C	C			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL6A6	131873	broad.mit.edu	37	3	130300391	130300391	+	Intron	SNP	C	T	T			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPE	1363	broad.mit.edu	37	4	166325419	166325419	+	Intron	SNP	G	T	T			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPN2	1370	broad.mit.edu	37	3	194062878	194062878	+	Missense_Mutation	SNP	G	T	T	rs143748840		TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CREB3L2	64764	broad.mit.edu	37	7	137600857	137600857	+	Intron	SNP	G	A	A			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CREBBP	1387	broad.mit.edu	37	16	3778778	3778778	+	Silent	SNP	G	C	C			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CRISP1	167	broad.mit.edu	37	6	49814479	49814479	+	Intron	SNP	C	T	T			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CRNKL1	51340	broad.mit.edu	37	20	20021469	20021469	+	Intron	SNP	T	G	G			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CRYM	1428	broad.mit.edu	37	16	21281246	21281246	+	Intron	SNP	G	A	A			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD1	64478	broad.mit.edu	37	8	2819885	2819885	+	Intron	SNP	T	C	C			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD3	114788	broad.mit.edu	37	8	113241180	113241180	+	Intron	SNP	C	A	A			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD3	114788	broad.mit.edu	37	8	114186083	114186083	+	Nonsense_Mutation	SNP	T	A	A			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTNNA2	1496	broad.mit.edu	37	2	79422911	79422911	+	Intron	SNP	C	A	A			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTNNA2	1496	broad.mit.edu	37	2	80101225	80101225	+	Silent	SNP	G	T	T			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTNNA2	1496	broad.mit.edu	37	2	80874540	80874540	+	Intron	SNP	T	A	A			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CXorf22	170063	broad.mit.edu	37	X	35973920	35973920	+	Intron	SNP	C	T	T	rs111571802		TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CXorf22	170063	broad.mit.edu	37	X	35973922	35973922	+	Intron	SNP	T	A	A			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP17A1	1586	broad.mit.edu	37	10	104594587	104594587	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP1A2	1544	broad.mit.edu	37	15	75044554	75044554	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP21A2	1589	broad.mit.edu	37	6	32007878	32007878	+	Nonsense_Mutation	SNP	G	T	T			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP7A1	1581	broad.mit.edu	37	8	59404999	59404999	+	Silent	SNP	G	A	A			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYTIP	9595	broad.mit.edu	37	2	158287305	158287305	+	Intron	SNP	C	T	T			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DAAM2	23500	broad.mit.edu	37	6	39843275	39843275	+	Intron	SNP	C	T	T			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DACH2	117154	broad.mit.edu	37	X	86071078	86071078	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCAF4L2	138009	broad.mit.edu	37	8	88885129	88885129	+	Silent	SNP	G	C	C			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCHS2	54798	broad.mit.edu	37	4	155287361	155287361	+	Splice_Site	SNP	C	A	A			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DDI2	84301	broad.mit.edu	37	1	15976327	15976327	+	Intron	SNP	G	A	A			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DDX1	1653	broad.mit.edu	37	2	15739851	15739851	+	Intron	SNP	A	T	T			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DEFB118	117285	broad.mit.edu	37	20	29957857	29957857	+	Intron	SNP	G	T	T			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DES	1674	broad.mit.edu	37	2	220290416	220290416	+	Silent	SNP	C	A	A			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DHX36	170506	broad.mit.edu	37	3	154011446	154011446	+	Intron	SNP	T	A	A			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DHX36	170506	broad.mit.edu	37	3	154011603	154011603	+	Splice_Site	SNP	T	C	C			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DIP2C	22982	broad.mit.edu	37	10	329151	329151	+	Intron	SNP	C	T	T			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DIP2C	22982	broad.mit.edu	37	10	518573	518573	+	Intron	SNP	C	A	A			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DKFZp686A1627	266695	broad.mit.edu	37	13	19624264	19624264	+	Intron	SNP	C	G	G			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DMD	1756	broad.mit.edu	37	X	32583858	32583858	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH3	55567	broad.mit.edu	37	16	21030852	21030852	+	Intron	SNP	T	C	C			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH3	55567	broad.mit.edu	37	16	21045299	21045299	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH8	1769	broad.mit.edu	37	6	38905910	38905910	+	Silent	SNP	C	G	G			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAJB14	79982	broad.mit.edu	37	4	100825031	100825031	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAJC11	55735	broad.mit.edu	37	1	6740933	6740933	+	Intron	SNP	C	A	A			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNM1L	10059	broad.mit.edu	37	12	32873644	32873656	+	Frame_Shift_Del	DEL	CGTGATGAGTATG	-	-			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNM2	1785	broad.mit.edu	37	19	10897233	10897233	+	Intron	SNP	C	G	G			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DOCK2	1794	broad.mit.edu	37	5	169143320	169143320	+	Intron	SNP	G	T	T			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DOCK2	1794	broad.mit.edu	37	5	169477093	169477093	+	Intron	SNP	T	C	C			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DPP10	57628	broad.mit.edu	37	2	116593723	116593723	+	Intron	SNP	T	C	C			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DPPA2	151871	broad.mit.edu	37	3	109027791	109027791	+	Intron	SNP	A	T	T			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DPY19L2	283417	broad.mit.edu	37	12	63991544	63991544	+	Intron	DEL	C	-	-			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DQX1	165545	broad.mit.edu	37	2	74745631	74745631	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DRD3	1814	broad.mit.edu	37	3	113890711	113890711	+	Silent	SNP	G	A	A	rs143953030		TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DSCAML1	57453	broad.mit.edu	37	11	117375700	117375700	+	Silent	SNP	A	G	G			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DSG4	147409	broad.mit.edu	37	18	28991303	28991303	+	Silent	SNP	C	T	T			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DST	667	broad.mit.edu	37	6	56490116	56490116	+	Intron	SNP	C	T	T			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DST	667	broad.mit.edu	37	6	56499809	56499809	+	Intron	SNP	C	T	T			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DYDC2	84332	broad.mit.edu	37	10	82122102	82122102	+	Intron	SNP	G	T	T			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DYNC2H1	79659	broad.mit.edu	37	11	103178462	103178462	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ECEL1	9427	broad.mit.edu	37	2	233346566	233346566	+	Intron	SNP	C	T	T			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EFCAB5	374786	broad.mit.edu	37	17	28408005	28408005	+	Intron	SNP	T	C	C			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EIF4G3	8672	broad.mit.edu	37	1	21187009	21187009	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ELF3	1999	broad.mit.edu	37	1	201983203	201983203	+	Intron	SNP	G	C	C			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EMR3	84658	broad.mit.edu	37	19	14785534	14785534	+	Intron	SNP	A	T	T			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ENPP1	5167	broad.mit.edu	37	6	132149291	132149291	+	Intron	SNP	G	T	T			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EP400	57634	broad.mit.edu	37	12	132491222	132491222	+	Intron	SNP	C	T	T			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EP400	57634	broad.mit.edu	37	12	132491471	132491471	+	Intron	SNP	C	T	T			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPB41L2	2037	broad.mit.edu	37	6	131211719	131211719	+	Intron	SNP	T	C	C			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPX	8288	broad.mit.edu	37	17	56277029	56277029	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ERLIN2	11160	broad.mit.edu	37	8	37599439	37599439	+	Intron	SNP	G	C	C			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ESYT2	57488	broad.mit.edu	37	7	158536459	158536459	+	Intron	SNP	C	A	A			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ETAA1	54465	broad.mit.edu	37	2	67632270	67632270	+	Nonsense_Mutation	SNP	C	A	A			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ETS1	2113	broad.mit.edu	37	11	128332264	128332264	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EXOSC1	51013	broad.mit.edu	37	10	99202940	99202940	+	Intron	SNP	C	G	G			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EYS	346007	broad.mit.edu	37	6	66045134	66045134	+	Intron	SNP	G	T	T			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EYS	346007	broad.mit.edu	37	6	66200586	66200586	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
F13A1	2162	broad.mit.edu	37	6	6175086	6175086	+	Silent	SNP	T	G	G			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FABP12	646486	broad.mit.edu	37	8	82441718	82441719	+	Missense_Mutation	DNP	CA	AG	AG			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM126A	84668	broad.mit.edu	37	7	23017838	23017838	+	Intron	SNP	T	C	C			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM134B	54463	broad.mit.edu	37	5	16483364	16483364	+	Intron	SNP	G	A	A			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM135B	51059	broad.mit.edu	37	8	139153366	139153366	+	Intron	SNP	G	C	C			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM135B	51059	broad.mit.edu	37	8	139163568	139163568	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM135B	51059	broad.mit.edu	37	8	139164597	139164597	+	Frame_Shift_Del	DEL	C	-	-			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM18A	780776	broad.mit.edu	37	16	10862004	10862004	+	3'UTR	SNP	G	T	T			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM199X	139231	broad.mit.edu	37	X	103411551	103411551	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM19A2	338811	broad.mit.edu	37	12	62261015	62261015	+	Intron	SNP	C	G	G			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM54B	56181	broad.mit.edu	37	1	26152909	26152909	+	Intron	SNP	G	C	C			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM65C	140876	broad.mit.edu	37	20	49221413	49221413	+	Intron	SNP	C	A	A			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM66D	100132923	broad.mit.edu	37	8	11986619	11986619	+	Intron	SNP	G	T	T			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM71D	161142	broad.mit.edu	37	14	67666375	67666375	+	Intron	SNP	C	G	G			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FANCI	55215	broad.mit.edu	37	15	89807407	89807407	+	Intron	SNP	A	G	G			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FANCM	57697	broad.mit.edu	37	14	45644575	45644575	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FARSB	10056	broad.mit.edu	37	2	223511406	223511406	+	Intron	SNP	T	C	C			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAT3	120114	broad.mit.edu	37	11	92087588	92087588	+	Silent	SNP	G	T	T			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAT4	79633	broad.mit.edu	37	4	126336015	126336015	+	Intron	SNP	A	T	T			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAT4	79633	broad.mit.edu	37	4	126384717	126384717	+	Splice_Site	SNP	G	T	T			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBN1	2200	broad.mit.edu	37	15	48725323	48725323	+	Intron	SNP	C	G	G			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FCER2	2208	broad.mit.edu	37	19	7762237	7762237	+	Intron	SNP	A	G	G			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FCHO1	23149	broad.mit.edu	37	19	17881715	17881715	+	Intron	SNP	A	G	G			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FCN2	2220	broad.mit.edu	37	9	137778495	137778495	+	Intron	SNP	C	T	T			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FCRL3	115352	broad.mit.edu	37	1	157665413	157665413	+	Intron	SNP	G	A	A			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FER1L6	654463	broad.mit.edu	37	8	125131084	125131084	+	Splice_Site	SNP	G	A	A			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FIBP	9158	broad.mit.edu	37	11	65655166	65655166	+	Nonsense_Mutation	SNP	C	A	A			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FIG4	9896	broad.mit.edu	37	6	110146373	110146373	+	Nonsense_Mutation	SNP	C	T	T			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLJ25363	401082	broad.mit.edu	37	3	109190702	109190702	+	Intron	SNP	A	G	G			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLJ43860	389690	broad.mit.edu	37	8	142517281	142517281	+	5'UTR	SNP	C	A	A			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FN3KRP	79672	broad.mit.edu	37	17	80684448	80684448	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FNDC1	84624	broad.mit.edu	37	6	159653380	159653380	+	Silent	SNP	G	T	T			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FOLH1B	219595	broad.mit.edu	37	11	89429927	89429927	+	Intron	SNP	A	C	C			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FOLH1B	219595	broad.mit.edu	37	11	89431803	89431803	+	3'UTR	SNP	G	T	T			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FOLH1	2346	broad.mit.edu	37	11	49221942	49221942	+	Silent	SNP	A	T	T			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
G3BP2	9908	broad.mit.edu	37	4	76582152	76582152	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GATA3	2625	broad.mit.edu	37	10	8100829	8100830	+	Intron	DNP	CC	AA	AA			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GBP4	115361	broad.mit.edu	37	1	89651901	89651901	+	Intron	SNP	T	A	A			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GBP5	115362	broad.mit.edu	37	1	89730409	89730409	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GDPD4	220032	broad.mit.edu	37	11	76996198	76996198	+	5'UTR	SNP	T	G	G			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GEMIN6	79833	broad.mit.edu	37	2	38997168	38997168	+	Intron	SNP	A	G	G			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GFPT2	9945	broad.mit.edu	37	5	179762830	179762830	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GGT1	2678	broad.mit.edu	37	22	25019732	25019732	+	Intron	SNP	G	C	C			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GHSR	2693	broad.mit.edu	37	3	172166187	172166187	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GIGYF2	26058	broad.mit.edu	37	2	233712437	233712437	+	Intron	SNP	G	T	T			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GIMAP5	55340	broad.mit.edu	37	7	150438155	150438155	+	Intron	SNP	G	T	T			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GIMAP5	55340	broad.mit.edu	37	7	150439759	150439759	+	Silent	SNP	C	A	A			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GIMAP6	474344	broad.mit.edu	37	7	150324693	150324693	+	3'UTR	SNP	G	A	A			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GIPC2	54810	broad.mit.edu	37	1	78601527	78601527	+	3'UTR	SNP	G	A	A			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLT25D1	79709	broad.mit.edu	37	19	17690484	17690484	+	Intron	SNP	G	T	T			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GMEB2	26205	broad.mit.edu	37	20	62223356	62223356	+	Intron	SNP	G	A	A			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GNAS	2778	broad.mit.edu	37	20	57415311	57415311	+	Silent	SNP	C	T	T			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GNPTAB	79158	broad.mit.edu	37	12	102153823	102153823	+	Nonsense_Mutation	SNP	G	C	C			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GOLGA8C	729786	broad.mit.edu	37	15	20776655	20776655	+	Silent	SNP	G	T	T			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GP1BA	2811	broad.mit.edu	37	17	4836599	4836599	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GP2	2813	broad.mit.edu	37	16	20322604	20322604	+	Intron	SNP	C	A	A	rs35027086		TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR128	84873	broad.mit.edu	37	3	100388038	100388038	+	Intron	SNP	A	T	T			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR133	283383	broad.mit.edu	37	12	131488757	131488757	+	Nonsense_Mutation	SNP	A	T	T			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR155	151556	broad.mit.edu	37	2	175318530	175318530	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPX3	2878	broad.mit.edu	37	5	150407382	150407382	+	Intron	SNP	G	C	C			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRAMD1B	57476	broad.mit.edu	37	11	123469788	123469788	+	Intron	SNP	G	C	C			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRIA3	2892	broad.mit.edu	37	X	122528862	122528862	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRID2	2895	broad.mit.edu	37	4	94031777	94031777	+	Intron	SNP	T	C	C			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRIK1	2897	broad.mit.edu	37	21	31062244	31062244	+	Silent	SNP	G	C	C			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRIN2A	2903	broad.mit.edu	37	16	9858337	9858337	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRM7	2917	broad.mit.edu	37	3	7456760	7456760	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GSTM4	2948	broad.mit.edu	37	1	110201681	110201681	+	Silent	SNP	C	T	T			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GTPBP5	26164	broad.mit.edu	37	20	60774238	60774238	+	Missense_Mutation	SNP	G	C	C	rs146207812	byFrequency;by1000genomes	TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GUCY2C	2984	broad.mit.edu	37	12	14769752	14769752	+	Intron	SNP	A	T	T			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HAS1	3036	broad.mit.edu	37	19	52222521	52222521	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HCLS1	3059	broad.mit.edu	37	3	121363685	121363685	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HDAC2	3066	broad.mit.edu	37	6	114270103	114270121	+	Intron	DEL	ACCATTTTTTTCTGGAAAT	-	-			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HEATR5B	54497	broad.mit.edu	37	2	37306407	37306407	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HECW2	57520	broad.mit.edu	37	2	197184183	197184183	+	Silent	SNP	A	G	G			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HERC4	26091	broad.mit.edu	37	10	69750850	69750850	+	Intron	SNP	A	C	C			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HIP1	3092	broad.mit.edu	37	7	75186030	75186030	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HIST1H2AL	8332	broad.mit.edu	37	6	27833191	27833191	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HIST1H2BF	8343	broad.mit.edu	37	6	26200044	26200047	+	Frame_Shift_Del	DEL	GCGC	-	-			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HMGB2	3148	broad.mit.edu	37	4	174254255	174254255	+	Silent	SNP	C	G	G			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HPSE	10855	broad.mit.edu	37	4	84234281	84234281	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HRNR	388697	broad.mit.edu	37	1	152187728	152187728	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HSD17B7	51478	broad.mit.edu	37	1	162775393	162775393	+	Intron	SNP	G	C	C			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HTT	3064	broad.mit.edu	37	4	3231757	3231757	+	Silent	SNP	C	T	T	rs2229985		TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IDI2	91734	broad.mit.edu	37	10	1066617	1066617	+	Intron	SNP	G	T	T			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IGDCC4	57722	broad.mit.edu	37	15	65682627	65682627	+	Silent	SNP	C	T	T			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IGFBPL1	347252	broad.mit.edu	37	9	38414217	38414217	+	Intron	SNP	A	G	G			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL17A	3605	broad.mit.edu	37	6	52053998	52053998	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL1RAPL2	26280	broad.mit.edu	37	X	104440035	104440035	+	Intron	SNP	T	C	C			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL22	50616	broad.mit.edu	37	12	68645463	68645463	+	Intron	SNP	A	C	C			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL23R	149233	broad.mit.edu	37	1	67685533	67685533	+	Intron	SNP	G	T	T			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
INPP5D	3635	broad.mit.edu	37	2	234079123	234079123	+	Intron	SNP	G	A	A			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IRX3	79191	broad.mit.edu	37	16	54318157	54318157	+	Splice_Site	SNP	C	A	A			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGA6	3655	broad.mit.edu	37	2	173344449	173344449	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITIH2	3698	broad.mit.edu	37	10	7749130	7749130	+	Intron	SNP	A	G	G			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITIH2	3698	broad.mit.edu	37	10	7763533	7763533	+	Intron	SNP	C	G	G			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITIH2	3698	broad.mit.edu	37	10	7786107	7786107	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITM2A	9452	broad.mit.edu	37	X	78618510	78618510	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
JAK1	3716	broad.mit.edu	37	1	65351878	65351878	+	Intron	SNP	C	T	T			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
JARID2	3720	broad.mit.edu	37	6	15496731	15496748	+	In_Frame_Del	DEL	GCAGCTGCGGGAGGGCCT	-	-			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KALRN	8997	broad.mit.edu	37	3	124352712	124352712	+	Frame_Shift_Del	DEL	G	-	-			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KARS	3735	broad.mit.edu	37	16	75661934	75661934	+	Intron	SNP	C	T	T			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNH2	3757	broad.mit.edu	37	7	150646032	150646032	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNU1	157855	broad.mit.edu	37	8	36671860	36671860	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA0776	23376	broad.mit.edu	37	6	96999879	96999879	+	Intron	SNP	G	C	C			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1468	57614	broad.mit.edu	37	18	59855296	59855296	+	Intron	SNP	G	T	T			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1549	57670	broad.mit.edu	37	7	138525056	138525056	+	Intron	SNP	C	G	G			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF13A	63971	broad.mit.edu	37	6	17800239	17800239	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIR2DL3	3804	broad.mit.edu	37	19	55268359	55268359	+	Intron	SNP	C	A	A			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRTAP10-10	353333	broad.mit.edu	37	21	46057642	46057642	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRTAP21-1	337977	broad.mit.edu	37	21	32127642	32127642	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KSR1	8844	broad.mit.edu	37	17	25936223	25936223	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KTN1	3895	broad.mit.edu	37	14	56119936	56119936	+	Intron	SNP	G	A	A			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
L2HGDH	79944	broad.mit.edu	37	14	50732235	50732235	+	Intron	SNP	G	C	C			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
L2HGDH	79944	broad.mit.edu	37	14	50760887	50760887	+	Silent	SNP	C	A	A			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LDLRAD2	401944	broad.mit.edu	37	1	22139093	22139093	+	Intron	SNP	T	C	C			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LGALS9B	284194	broad.mit.edu	37	17	20361461	20361461	+	Intron	SNP	C	T	T			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LILRB2	10288	broad.mit.edu	37	19	54779714	54779714	+	Intron	SNP	G	C	C			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LILRB3	11025	broad.mit.edu	37	19	54721423	54721423	+	Intron	SNP	G	T	T			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LMBRD1	55788	broad.mit.edu	37	6	70490611	70490611	+	Intron	SNP	T	A	A			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LMO7	4008	broad.mit.edu	37	13	76416135	76416135	+	Intron	SNP	C	G	G			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC440040	440040	broad.mit.edu	37	11	49830148	49830148	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC646214	646214	broad.mit.edu	37	15	21937149	21937149	+	RNA	SNP	C	A	A			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC90586	90586	broad.mit.edu	37	17	41020531	41020531	+	3'UTR	SNP	G	T	T			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LPHN2	23266	broad.mit.edu	37	1	81969250	81969250	+	Intron	SNP	G	T	T			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRCH4	4034	broad.mit.edu	37	7	100176142	100176142	+	Intron	SNP	C	T	T			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP11	84918	broad.mit.edu	37	6	150158336	150158336	+	Intron	SNP	G	A	A			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP1B	53353	broad.mit.edu	37	2	141115623	141115623	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LTA	4049	broad.mit.edu	37	6	31540679	31540679	+	Intron	SNP	C	G	G			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LTBP1	4052	broad.mit.edu	37	2	33589406	33589406	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LTF	4057	broad.mit.edu	37	3	46483022	46483022	+	Intron	SNP	T	A	A			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LYZL2	119180	broad.mit.edu	37	10	30915723	30915723	+	Missense_Mutation	SNP	C	A	A	rs150609822		TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAGEB4	4115	broad.mit.edu	37	X	30260839	30260839	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAGEC3	139081	broad.mit.edu	37	X	140982901	140982901	+	Intron	SNP	G	T	T			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAP3K15	389840	broad.mit.edu	37	X	19389463	19389463	+	Silent	SNP	G	T	T	rs140041575	byFrequency	TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAP7D3	79649	broad.mit.edu	37	X	135314286	135314286	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MARCH8	220972	broad.mit.edu	37	10	45984984	45984984	+	Intron	SNP	A	G	G			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MARK3	4140	broad.mit.edu	37	14	103966507	103966507	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MATN2	4147	broad.mit.edu	37	8	99019788	99019788	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MCHR2	84539	broad.mit.edu	37	6	100382436	100382436	+	Intron	SNP	C	T	T			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MDN1	23195	broad.mit.edu	37	6	90368042	90368043	+	Frame_Shift_Del	DEL	CT	-	-			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MDN1	23195	broad.mit.edu	37	6	90394621	90394621	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MEI1	150365	broad.mit.edu	37	22	42172317	42172317	+	Intron	SNP	C	A	A			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MEP1A	4224	broad.mit.edu	37	6	46806699	46806699	+	Intron	SNP	C	T	T			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MFSD8	256471	broad.mit.edu	37	4	128854198	128854198	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MICAL2	9645	broad.mit.edu	37	11	12265428	12265428	+	Intron	SNP	C	T	T			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MIR516B1	574490	broad.mit.edu	37	19	54240062	54240062	+	5'Flank	SNP	T	A	A			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MIR519E	574463	broad.mit.edu	37	19	54183189	54183189	+	5'Flank	SNP	G	C	C			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MIR522	574495	broad.mit.edu	37	19	54254427	54254427	+	5'Flank	SNP	A	G	G			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MIR522	574495	broad.mit.edu	37	19	54254543	54254544	+	RNA	DNP	GC	TG	TG			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MLL3	58508	broad.mit.edu	37	7	151960229	151960229	+	Intron	SNP	T	C	C			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MMEL1	79258	broad.mit.edu	37	1	2526849	2526849	+	Intron	SNP	C	T	T			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MOV10	4343	broad.mit.edu	37	1	113241553	113241553	+	Intron	SNP	C	T	T			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MPP7	143098	broad.mit.edu	37	10	28527427	28527427	+	Intron	SNP	T	C	C	rs72382204		TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MRPL15	29088	broad.mit.edu	37	8	55055223	55055223	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MRPL39	54148	broad.mit.edu	37	21	26961267	26961267	+	Intron	SNP	T	C	C			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MS4A1	931	broad.mit.edu	37	11	60230706	60230706	+	Intron	SNP	A	T	T			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MS4A5	64232	broad.mit.edu	37	11	60201182	60201182	+	Intron	SNP	T	C	C			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MS4A6A	64231	broad.mit.edu	37	11	59939503	59939503	+	3'UTR	SNP	G	T	T			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MS4A6A	64231	broad.mit.edu	37	11	59949104	59949104	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MSH2	4436	broad.mit.edu	37	2	47637443	47637443	+	Nonsense_Mutation	SNP	C	T	T	rs63751326		TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MSH4	4438	broad.mit.edu	37	1	76349615	76349615	+	Intron	SNP	C	A	A			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MSH4	4438	broad.mit.edu	37	1	76365200	76365200	+	Intron	DEL	G	-	-			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MSI1	4440	broad.mit.edu	37	12	120800988	120800988	+	Intron	SNP	C	A	A	rs73221336	byFrequency;by1000genomes	TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTHFS	10588	broad.mit.edu	37	15	80181744	80181744	+	Intron	SNP	A	T	T			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTOR	2475	broad.mit.edu	37	1	11319410	11319410	+	Silent	SNP	C	A	A			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC16	94025	broad.mit.edu	37	19	9008103	9008103	+	Intron	SNP	G	T	T			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYEOV	26579	broad.mit.edu	37	11	69063509	69063509	+	Nonsense_Mutation	SNP	C	T	T			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH11	4629	broad.mit.edu	37	16	15835754	15835754	+	Intron	SNP	C	G	G			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH15	22989	broad.mit.edu	37	3	108117895	108117895	+	Intron	SNP	C	A	A			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH7	4625	broad.mit.edu	37	14	23888945	23888945	+	Intron	SNP	G	A	A			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH8	4626	broad.mit.edu	37	17	10316174	10316174	+	Intron	SNP	G	T	T			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYL1	4632	broad.mit.edu	37	2	211158389	211158389	+	Intron	SNP	C	A	A			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO18B	84700	broad.mit.edu	37	22	26193973	26193973	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO1D	4642	broad.mit.edu	37	17	31094726	31094726	+	Silent	SNP	G	A	A			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO9A	4649	broad.mit.edu	37	15	72171958	72171958	+	Intron	SNP	G	A	A			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYOT	9499	broad.mit.edu	37	5	137211571	137211571	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NAALAD2	10003	broad.mit.edu	37	11	89892360	89892360	+	Intron	SNP	A	G	G			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NADK	65220	broad.mit.edu	37	1	1685608	1685608	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NAP1L5	266812	broad.mit.edu	37	4	89618431	89618431	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NAV3	89795	broad.mit.edu	37	12	78571477	78571477	+	Intron	SNP	T	C	C			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBAS	51594	broad.mit.edu	37	2	15519600	15519600	+	Intron	SNP	G	A	A			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCAM2	4685	broad.mit.edu	37	21	22790887	22790887	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCAM2	4685	broad.mit.edu	37	21	22881186	22881186	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCKAP1L	3071	broad.mit.edu	37	12	54911262	54911262	+	Intron	SNP	C	A	A			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCSTN	23385	broad.mit.edu	37	1	160318991	160318991	+	Intron	SNP	A	G	G			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NELL1	4745	broad.mit.edu	37	11	20906900	20906900	+	Intron	SNP	G	T	T			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NKAIN3	286183	broad.mit.edu	37	8	63830965	63830965	+	Intron	SNP	G	A	A			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLRP14	338323	broad.mit.edu	37	11	7063910	7063910	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLRP14	338323	broad.mit.edu	37	11	7079571	7079571	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLRP2	55655	broad.mit.edu	37	19	55502086	55502086	+	Intron	SNP	G	A	A	rs149177056	by1000genomes	TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLRP7	199713	broad.mit.edu	37	19	55449547	55449547	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NMS	129521	broad.mit.edu	37	2	101089917	101089917	+	Intron	SNP	C	T	T			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NOP56	10528	broad.mit.edu	37	20	2638491	2638491	+	Intron	SNP	C	T	T			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NPAS2	4862	broad.mit.edu	37	2	101564584	101564584	+	Intron	SNP	A	T	T			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NPR2	4882	broad.mit.edu	37	9	35793020	35793020	+	Silent	SNP	A	G	G			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NPY	4852	broad.mit.edu	37	7	24329140	24329140	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRG3	10718	broad.mit.edu	37	10	84625062	84625062	+	Intron	SNP	G	T	T			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRP1	8829	broad.mit.edu	37	10	33468926	33468926	+	3'UTR	SNP	T	A	A			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRP1	8829	broad.mit.edu	37	10	33469171	33469171	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRXN3	9369	broad.mit.edu	37	14	79117460	79117460	+	Intron	SNP	C	A	A			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NSMAF	8439	broad.mit.edu	37	8	59512669	59512669	+	Intron	SNP	T	A	A			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NUDC	10726	broad.mit.edu	37	1	27272209	27272209	+	Intron	SNP	G	C	C			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NUP210	23225	broad.mit.edu	37	3	13360754	13360754	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NXNL1	115861	broad.mit.edu	37	19	17571670	17571670	+	Silent	SNP	G	A	A			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OCA2	4948	broad.mit.edu	37	15	28200128	28200128	+	Intron	SNP	G	C	C			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ODZ1	10178	broad.mit.edu	37	X	123514910	123514910	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ODZ1	10178	broad.mit.edu	37	X	123695446	123695446	+	Intron	SNP	T	A	A			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OPRK1	4986	broad.mit.edu	37	8	54142126	54142126	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR10AG1	282770	broad.mit.edu	37	11	55735507	55735507	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR10G9	219870	broad.mit.edu	37	11	123894265	123894265	+	Silent	SNP	C	A	A			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR1I1	126370	broad.mit.edu	37	19	15197931	15197931	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2T6	254879	broad.mit.edu	37	1	248551473	248551473	+	Silent	SNP	C	A	A			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4N4	283694	broad.mit.edu	37	15	22333345	22333345	+	Intron	SNP	T	A	A			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR51D1	390038	broad.mit.edu	37	11	4661248	4661248	+	Silent	SNP	G	C	C			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR52N5	390075	broad.mit.edu	37	11	5799408	5799408	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR5M9	390162	broad.mit.edu	37	11	56230199	56230199	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR6C4	341418	broad.mit.edu	37	12	55945511	55945511	+	Silent	SNP	T	C	C			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR8B4	283162	broad.mit.edu	37	11	124294723	124294723	+	Silent	SNP	C	A	A			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
P2RY10	27334	broad.mit.edu	37	X	78216046	78216046	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAAF1	80227	broad.mit.edu	37	11	73627750	73627750	+	Intron	SNP	G	T	T			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAGE3	139793	broad.mit.edu	37	X	55286938	55286938	+	Intron	SNP	A	T	T			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAH	5053	broad.mit.edu	37	12	103249226	103249226	+	Intron	SNP	A	G	G			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAK3	5063	broad.mit.edu	37	X	110435485	110435485	+	Intron	DEL	A	-	-			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAPOLG	64895	broad.mit.edu	37	2	61019475	61019475	+	Intron	SNP	G	A	A			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PARK2	5071	broad.mit.edu	37	6	162989862	162989862	+	Intron	SNP	G	A	A			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCCB	5096	broad.mit.edu	37	3	136002933	136002933	+	Intron	SNP	G	A	A			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH15	65217	broad.mit.edu	37	10	55590995	55590995	+	Intron	SNP	C	T	T	rs146515245	by1000genomes	TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH7	5099	broad.mit.edu	37	4	30726073	30726073	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHB14	56122	broad.mit.edu	37	5	140604269	140604269	+	Missense_Mutation	SNP	A	C	C			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHGA5	56110	broad.mit.edu	37	5	140744997	140744997	+	Missense_Mutation	SNP	C	T	T	rs151160787	by1000genomes	TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHGA7	56108	broad.mit.edu	37	5	140762764	140762764	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHGA7	56108	broad.mit.edu	37	5	140762857	140762857	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCM1	5108	broad.mit.edu	37	8	17804643	17804643	+	Intron	SNP	G	A	A	rs143250926	by1000genomes	TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDCD10	11235	broad.mit.edu	37	3	167412151	167412151	+	Intron	SNP	C	T	T			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDCD10	11235	broad.mit.edu	37	3	167437737	167437737	+	Intron	SNP	A	G	G			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE1A	5136	broad.mit.edu	37	2	183088789	183088789	+	Intron	SNP	T	C	C			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE1C	5137	broad.mit.edu	37	7	31867886	31867886	+	Intron	SNP	A	G	G	rs140975048	by1000genomes	TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE3A	5139	broad.mit.edu	37	12	20704681	20704681	+	Intron	SNP	C	T	T			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDILT	204474	broad.mit.edu	37	16	20384313	20384313	+	Intron	SNP	G	C	C			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDILT	204474	broad.mit.edu	37	16	20386364	20386364	+	Intron	SNP	T	A	A			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PEG3	5178	broad.mit.edu	37	19	57334976	57334976	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PEG3	5178	broad.mit.edu	37	19	57335144	57335144	+	Intron	SNP	C	T	T			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PEX5L	51555	broad.mit.edu	37	3	179615882	179615882	+	Intron	SNP	A	G	G			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PGA3	643834	broad.mit.edu	37	11	60974818	60974818	+	Intron	SNP	G	A	A			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PGAM1	5223	broad.mit.edu	37	10	99190889	99190889	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PHF14	9678	broad.mit.edu	37	7	11022706	11022706	+	Nonsense_Mutation	SNP	A	T	T			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PHKA1	5255	broad.mit.edu	37	X	71838619	71838619	+	Silent	SNP	C	T	T			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PI4KB	5298	broad.mit.edu	37	1	151288800	151288800	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PICALM	8301	broad.mit.edu	37	11	85692752	85692752	+	Intron	SNP	C	A	A			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIK3R4	30849	broad.mit.edu	37	3	130437287	130437287	+	Silent	SNP	G	C	C			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PKHD1	5314	broad.mit.edu	37	6	51890773	51890773	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLAUR	5329	broad.mit.edu	37	19	44153059	44153059	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLK4	10733	broad.mit.edu	37	4	128815036	128815036	+	Silent	SNP	T	A	A			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLXNA4	91584	broad.mit.edu	37	7	131866699	131866699	+	Intron	SNP	C	T	T			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PMS2CL	441194	broad.mit.edu	37	7	6759420	6759420	+	Intron	SNP	A	G	G			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PMS2L4	5382	broad.mit.edu	37	7	66751342	66751342	+	Intron	SNP	T	C	C			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PNCK	139728	broad.mit.edu	37	X	152938004	152938004	+	Intron	SNP	C	A	A			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PNLDC1	154197	broad.mit.edu	37	6	160227025	160227025	+	Frame_Shift_Del	DEL	A	-	-			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PNLIPRP1	5407	broad.mit.edu	37	10	118359684	118359684	+	Intron	SNP	T	C	C			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PNO1	56902	broad.mit.edu	37	2	68385445	68385445	+	Intron	SNP	G	C	C			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POLR1B	84172	broad.mit.edu	37	2	113322225	113322225	+	Intron	SNP	G	A	A			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POTEF	728378	broad.mit.edu	37	2	130832309	130832309	+	Silent	SNP	G	T	T			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POU3F4	5456	broad.mit.edu	37	X	82763625	82763625	+	Nonsense_Mutation	SNP	C	A	A			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPM1B	5495	broad.mit.edu	37	2	44428309	44428309	+	Intron	SNP	G	C	C			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPP2CA	5515	broad.mit.edu	37	5	133536238	133536238	+	Intron	SNP	C	A	A			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRAMEF12	390999	broad.mit.edu	37	1	12835253	12835253	+	Silent	SNP	G	T	T			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PREX2	80243	broad.mit.edu	37	8	69028264	69028264	+	Intron	SNP	C	A	A			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRMT10	90826	broad.mit.edu	37	4	148604819	148604819	+	Intron	SNP	A	G	G			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PROCA1	147011	broad.mit.edu	37	17	27031178	27031178	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PROS1	5627	broad.mit.edu	37	3	93617304	93617304	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PROS1	5627	broad.mit.edu	37	3	93650485	93650485	+	Intron	SNP	C	A	A			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRSS1	5644	broad.mit.edu	37	7	142459838	142459838	+	Silent	SNP	G	A	A			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSMB2	5690	broad.mit.edu	37	1	36070696	36070696	+	Intron	SNP	T	C	C			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTENP1	11191	broad.mit.edu	37	9	33676304	33676304	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPN21	11099	broad.mit.edu	37	14	88945912	88945912	+	Silent	SNP	G	A	A			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRH	5794	broad.mit.edu	37	19	55718315	55718315	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRK	5796	broad.mit.edu	37	6	128298214	128298214	+	Intron	SNP	G	A	A			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRR	5801	broad.mit.edu	37	12	71066181	71066181	+	Intron	SNP	C	G	G			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PXDNL	137902	broad.mit.edu	37	8	52348672	52348672	+	Intron	SNP	C	A	A			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PXDN	7837	broad.mit.edu	37	2	1647408	1647408	+	Intron	SNP	G	A	A			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAB11FIP1	80223	broad.mit.edu	37	8	37732063	37732063	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RABGAP1L	9910	broad.mit.edu	37	1	174219785	174219785	+	Intron	SNP	A	C	C			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RABGAP1	23637	broad.mit.edu	37	9	125832720	125832720	+	Intron	SNP	C	T	T			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RACGAP1P	83956	broad.mit.edu	37	12	45458927	45458927	+	RNA	SNP	C	A	A			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAI14	26064	broad.mit.edu	37	5	34807958	34807958	+	Silent	SNP	T	C	C			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RALGAPA1	253959	broad.mit.edu	37	14	36219967	36219967	+	Intron	SNP	T	A	A			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RANBP6	26953	broad.mit.edu	37	9	6015441	6015441	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RARG	5916	broad.mit.edu	37	12	53609510	53609510	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RASA1	5921	broad.mit.edu	37	5	86682703	86682703	+	Frame_Shift_Del	DEL	T	-	-			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RASGRP4	115727	broad.mit.edu	37	19	38903629	38903629	+	Silent	SNP	G	T	T			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RBM44	375316	broad.mit.edu	37	2	238726601	238726601	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RCOR3	55758	broad.mit.edu	37	1	211452489	211452489	+	Intron	SNP	A	G	G			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
REG1B	5968	broad.mit.edu	37	2	79312789	79312790	+	Intron	DNP	GG	TT	TT			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
REG3A	5068	broad.mit.edu	37	2	79384969	79384969	+	Intron	SNP	C	A	A			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RELN	5649	broad.mit.edu	37	7	103162699	103162699	+	Intron	SNP	A	T	T			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
REV1	51455	broad.mit.edu	37	2	100052449	100052449	+	Intron	SNP	A	C	C			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RGS22	26166	broad.mit.edu	37	8	101076251	101076251	+	Nonsense_Mutation	SNP	C	A	A			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RGS6	9628	broad.mit.edu	37	14	72936600	72936600	+	Intron	SNP	C	T	T			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RHOV	171177	broad.mit.edu	37	15	41165855	41165855	+	Intron	SNP	C	A	A			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RICTOR	253260	broad.mit.edu	37	5	38945134	38945134	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RIMS1	22999	broad.mit.edu	37	6	73110293	73110294	+	Missense_Mutation	DNP	GA	AT	AT			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNF175	285533	broad.mit.edu	37	4	154649432	154649432	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNF32	140545	broad.mit.edu	37	7	156450185	156450185	+	Intron	SNP	G	T	T			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ROBO4	54538	broad.mit.edu	37	11	124766351	124766351	+	Intron	SNP	G	A	A			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPL24	6152	broad.mit.edu	37	3	101404672	101404672	+	Missense_Mutation	SNP	T	G	G			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPS6KA2	6196	broad.mit.edu	37	6	166833431	166833431	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RSAD2	91543	broad.mit.edu	37	2	7023675	7023675	+	Intron	SNP	G	T	T			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RTL1	388015	broad.mit.edu	37	14	101348343	101348343	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RTN1	6252	broad.mit.edu	37	14	60213011	60213011	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR1	6261	broad.mit.edu	37	19	39070793	39070793	+	Intron	SNP	G	T	T			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR2	6262	broad.mit.edu	37	1	237868445	237868445	+	Intron	SNP	A	T	T			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR2	6262	broad.mit.edu	37	1	237957224	237957224	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR3	6263	broad.mit.edu	37	15	34157472	34157472	+	3'UTR	SNP	A	C	C			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SAGE1	55511	broad.mit.edu	37	X	134990674	134990674	+	Nonsense_Mutation	SNP	G	T	T			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SALL4	57167	broad.mit.edu	37	20	50408833	50408834	+	Frame_Shift_Ins	INS	-	G	G			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SBSN	374897	broad.mit.edu	37	19	36017586	36017586	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCAPER	49855	broad.mit.edu	37	15	77087752	77087752	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCN8A	6334	broad.mit.edu	37	12	52106128	52106128	+	Intron	SNP	G	T	T			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEC23A	10484	broad.mit.edu	37	14	39508297	39508297	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEL1L	6400	broad.mit.edu	37	14	81945972	81945972	+	Frame_Shift_Del	DEL	T	-	-			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEMA3D	223117	broad.mit.edu	37	7	84651816	84651816	+	Silent	SNP	T	A	A			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEMA4G	57715	broad.mit.edu	37	10	102738135	102738135	+	Silent	SNP	C	T	T			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEMA5B	54437	broad.mit.edu	37	3	122634497	122634497	+	Intron	SNP	C	T	T			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEMA6D	80031	broad.mit.edu	37	15	48063473	48063473	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEPT11	55752	broad.mit.edu	37	4	77880029	77880029	+	Intron	SNP	G	T	T			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SERPINE1	5054	broad.mit.edu	37	7	100773739	100773740	+	Nonsense_Mutation	DNP	GG	CT	CT			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SETBP1	26040	broad.mit.edu	37	18	42643638	42643638	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SGCD	6444	broad.mit.edu	37	5	156186284	156186284	+	Silent	SNP	G	C	C			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SHKBP1	92799	broad.mit.edu	37	19	41096894	41096894	+	Silent	SNP	C	A	A			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SIGLEC1	6614	broad.mit.edu	37	20	3669805	3669805	+	Silent	SNP	C	A	A	rs143796184	byFrequency	TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SIGLEC5	8778	broad.mit.edu	37	19	52130877	52130877	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SIM1	6492	broad.mit.edu	37	6	100897620	100897620	+	Intron	SNP	C	T	T			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SIM1	6492	broad.mit.edu	37	6	100901567	100901567	+	Intron	DEL	A	-	-			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SI	6476	broad.mit.edu	37	3	164735649	164735649	+	Missense_Mutation	SNP	T	G	G			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC13A3	64849	broad.mit.edu	37	20	45220931	45220931	+	Intron	SNP	G	A	A			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC17A2	10246	broad.mit.edu	37	6	25914897	25914897	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC23A2	9962	broad.mit.edu	37	20	4855301	4855301	+	Missense_Mutation	SNP	T	G	G			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC25A18	83733	broad.mit.edu	37	22	18066168	18066168	+	Intron	SNP	G	C	C	rs149112328	by1000genomes	TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC30A4	7782	broad.mit.edu	37	15	45814155	45814155	+	Intron	SNP	A	G	G			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC35F1	222553	broad.mit.edu	37	6	118588185	118588186	+	Frame_Shift_Del	DEL	GT	-	-			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC35F1	222553	broad.mit.edu	37	6	118588441	118588441	+	Intron	SNP	C	A	A			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC39A12	221074	broad.mit.edu	37	10	18331602	18331602	+	Intron	SNP	G	T	T			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC39A8	64116	broad.mit.edu	37	4	103237077	103237077	+	Intron	SNP	C	A	A			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC44A5	204962	broad.mit.edu	37	1	75677414	75677414	+	Intron	SNP	C	T	T			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC44A5	204962	broad.mit.edu	37	1	76047962	76047962	+	Intron	SNP	T	C	C			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC6A13	6540	broad.mit.edu	37	12	344181	344181	+	Intron	SNP	C	G	G			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC6A5	9152	broad.mit.edu	37	11	20639405	20639405	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC7A14	57709	broad.mit.edu	37	3	170201305	170201305	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLCO1B3	28234	broad.mit.edu	37	12	21242932	21242932	+	Silent	SNP	T	C	C			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLCO2B1	11309	broad.mit.edu	37	11	74904192	74904192	+	Intron	SNP	G	T	T			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMC6	79677	broad.mit.edu	37	2	17927206	17927206	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNORD113-9	767569	broad.mit.edu	37	14	101409927	101409927	+	5'Flank	SNP	A	G	G			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SON	6651	broad.mit.edu	37	21	34948850	34948850	+	3'UTR	SNP	G	A	A			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SORCS1	114815	broad.mit.edu	37	10	108380099	108380099	+	Intron	SNP	G	T	T			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SP100	6672	broad.mit.edu	37	2	231314715	231314715	+	Intron	SNP	G	A	A			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPAST	6683	broad.mit.edu	37	2	32312665	32312665	+	Intron	SNP	T	C	C			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPCS1	28972	broad.mit.edu	37	3	52741778	52741778	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPEF2	79925	broad.mit.edu	37	5	35700805	35700805	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPEG	10290	broad.mit.edu	37	2	220352942	220352942	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPEN	23013	broad.mit.edu	37	1	16248702	16248702	+	Intron	SNP	A	T	T			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPG7	6687	broad.mit.edu	37	16	89611153	89611153	+	Silent	SNP	C	T	T			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPOCD1	90853	broad.mit.edu	37	1	32280141	32280141	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPRYD5	84767	broad.mit.edu	37	11	55648879	55648879	+	5'Flank	SNP	A	G	G			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SRBD1	55133	broad.mit.edu	37	2	45801959	45801959	+	Intron	SNP	T	C	C			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SRCAP	10847	broad.mit.edu	37	16	30723431	30723431	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SRD5A2	6716	broad.mit.edu	37	2	31756524	31756524	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SSX7	280658	broad.mit.edu	37	X	52677126	52677126	+	Intron	SNP	T	C	C			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ST18	9705	broad.mit.edu	37	8	53030991	53030991	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ST6GALNAC3	256435	broad.mit.edu	37	1	77094628	77094628	+	3'UTR	SNP	G	T	T			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ST7	7982	broad.mit.edu	37	7	116830964	116830964	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ST8SIA1	6489	broad.mit.edu	37	12	22408191	22408191	+	Intron	SNP	G	C	C			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STAC	6769	broad.mit.edu	37	3	36524424	36524424	+	Intron	SNP	G	T	T			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STAC	6769	broad.mit.edu	37	3	36545950	36545950	+	Splice_Site	SNP	G	T	T			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STAG2	10735	broad.mit.edu	37	X	123229240	123229240	+	Nonsense_Mutation	SNP	C	T	T			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STAM	8027	broad.mit.edu	37	10	17726562	17726562	+	Intron	SNP	C	T	T			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STAT4	6775	broad.mit.edu	37	2	191919190	191919190	+	Intron	SNP	A	G	G			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STK38	11329	broad.mit.edu	37	6	36475470	36475470	+	Intron	SNP	C	A	A			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STOML1	9399	broad.mit.edu	37	15	74284679	74284679	+	5'Flank	SNP	C	A	A			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SULF1	23213	broad.mit.edu	37	8	70498853	70498853	+	Intron	SNP	A	G	G			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SUPT16H	11198	broad.mit.edu	37	14	21830303	21830303	+	Intron	SNP	G	T	T			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SVEP1	79987	broad.mit.edu	37	9	113149665	113149665	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYCP2L	221711	broad.mit.edu	37	6	10956459	10956459	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYNE1	23345	broad.mit.edu	37	6	152651646	152651646	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYNPR	132204	broad.mit.edu	37	3	63466702	63466702	+	Intron	DEL	A	-	-			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYT1	6857	broad.mit.edu	37	12	79747162	79747162	+	Intron	SNP	C	T	T			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYT3	84258	broad.mit.edu	37	19	51128456	51128456	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYTL5	94122	broad.mit.edu	37	X	37985860	37985860	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAF1L	138474	broad.mit.edu	37	9	32633772	32633772	+	Silent	SNP	G	T	T			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TDO2	6999	broad.mit.edu	37	4	156837113	156837113	+	Intron	SNP	T	C	C			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TFG	10342	broad.mit.edu	37	3	100467466	100467466	+	3'UTR	SNP	G	C	C			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TGFB1	7040	broad.mit.edu	37	19	41847856	41847856	+	Silent	SNP	C	T	T			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TGFBR3	7049	broad.mit.edu	37	1	92224104	92224104	+	Intron	SNP	G	T	T			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TG	7038	broad.mit.edu	37	8	134034543	134034543	+	Intron	SNP	C	T	T			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
THSD7B	80731	broad.mit.edu	37	2	138425295	138425295	+	Intron	SNP	T	A	A			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TLL1	7092	broad.mit.edu	37	4	166915512	166915512	+	Intron	SNP	A	G	G			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMCO5A	145942	broad.mit.edu	37	15	38243574	38243574	+	3'UTR	SNP	A	G	G			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM225	338661	broad.mit.edu	37	11	123756274	123756274	+	5'UTR	SNP	A	G	G			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM40	55287	broad.mit.edu	37	3	12791318	12791318	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMTC2	160335	broad.mit.edu	37	12	83379884	83379884	+	Intron	SNP	G	C	C			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMTC2	160335	broad.mit.edu	37	12	83379890	83379890	+	Intron	SNP	T	A	A			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNC	3371	broad.mit.edu	37	9	117848842	117848842	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TP53	7157	broad.mit.edu	37	17	7577534	7577534	+	Missense_Mutation	SNP	C	A	A	rs28934571		TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPM2	7169	broad.mit.edu	37	9	35684986	35684986	+	Intron	SNP	C	T	T			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPR	7175	broad.mit.edu	37	1	186304764	186304764	+	Intron	SNP	G	A	A			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPTE2	93492	broad.mit.edu	37	13	20077497	20077497	+	Intron	SNP	C	A	A			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPTE	7179	broad.mit.edu	37	21	10907072	10907072	+	Intron	SNP	A	G	G			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRAFD1	10906	broad.mit.edu	37	12	112572736	112572736	+	Intron	SNP	T	A	A			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRAPPC1	58485	broad.mit.edu	37	17	7833933	7833933	+	Silent	SNP	C	A	A			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRDN	10345	broad.mit.edu	37	6	123542652	123542652	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRHDE	29953	broad.mit.edu	37	12	73014989	73014989	+	Intron	SNP	C	G	G			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIM21	6737	broad.mit.edu	37	11	4406748	4406748	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIM40	135644	broad.mit.edu	37	6	30105165	30105165	+	Intron	SNP	C	A	A			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIM44	54765	broad.mit.edu	37	11	35747573	35747573	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIM48	79097	broad.mit.edu	37	11	55035270	55035270	+	Intron	SNP	C	A	A			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIO	7204	broad.mit.edu	37	5	14507932	14507932	+	Intron	SNP	C	T	T			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIO	7204	broad.mit.edu	37	5	14507985	14507985	+	Intron	SNP	C	T	T			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIP13	9319	broad.mit.edu	37	5	896995	896995	+	Intron	SNP	G	T	T			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPV3	162514	broad.mit.edu	37	17	3458001	3458001	+	Intron	SNP	C	T	T	rs144003543	by1000genomes	TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRRAP	8295	broad.mit.edu	37	7	98491575	98491575	+	Intron	SNP	G	T	T			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRRAP	8295	broad.mit.edu	37	7	98606135	98606135	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TSC2	7249	broad.mit.edu	37	16	2106267	2106267	+	Intron	SNP	G	T	T			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TSPAN11	441631	broad.mit.edu	37	12	31131475	31131475	+	Intron	SNP	G	A	A			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TSSK3	81629	broad.mit.edu	37	1	32829703	32829703	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTC14	151613	broad.mit.edu	37	3	180322180	180322180	+	Intron	SNP	G	A	A			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179605006	179605006	+	Silent	SNP	A	G	G			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179613696	179613696	+	Silent	SNP	A	T	T			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179628998	179628998	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TYRO3	7301	broad.mit.edu	37	15	41857295	41857295	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
U2AF1L4	199746	broad.mit.edu	37	19	36234710	36234710	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBE2NL	389898	broad.mit.edu	37	X	142967138	142967138	+	5'Flank	SNP	T	A	A			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBE2O	63893	broad.mit.edu	37	17	74396058	74396058	+	Intron	SNP	C	T	T			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UMODL1	89766	broad.mit.edu	37	21	43547016	43547016	+	Intron	SNP	G	A	A			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UNG	7374	broad.mit.edu	37	12	109547637	109547637	+	Missense_Mutation	SNP	C	T	T	rs143034537		TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UTP14A	10813	broad.mit.edu	37	X	129055079	129055079	+	Intron	SNP	T	C	C			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	107446298	107446298	+	IGR	SNP	G	T	T			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	108310178	108310178	+	IGR	SNP	A	T	T			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	125751992	125751992	+	IGR	SNP	A	C	C			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	28948139	28948139	+	IGR	SNP	T	A	A			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	43062213	43062213	+	IGR	SNP	T	C	C			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	123894687	123894687	+	IGR	SNP	A	G	G			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	124086105	124086105	+	IGR	SNP	T	C	C			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	14929556	14929556	+	IGR	SNP	C	A	A			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	3431779	3431779	+	IGR	SNP	G	T	T			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	4231469	4231469	+	IGR	SNP	G	T	T			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	4351045	4351045	+	IGR	SNP	C	T	T			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	48611387	48611387	+	IGR	SNP	G	T	T			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	49090330	49090330	+	IGR	SNP	A	G	G			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	49387692	49387692	+	IGR	SNP	C	A	A			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	49920623	49920623	+	IGR	SNP	C	G	G			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	5058497	5058497	+	IGR	SNP	G	T	T			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	51426167	51426167	+	IGR	SNP	A	T	T			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	51426177	51426178	+	IGR	DNP	CC	TT	TT			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	55086092	55086092	+	IGR	SNP	T	C	C			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	58155493	58155493	+	IGR	SNP	G	A	A			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	71304586	71304586	+	IGR	SNP	C	A	A			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	90849178	90849178	+	IGR	SNP	C	T	T			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	11665823	11665823	+	IGR	SNP	G	T	T			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	17144699	17144699	+	IGR	SNP	G	T	T			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	4208221	4208221	+	IGR	SNP	G	T	T			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	80651837	80651837	+	IGR	SNP	A	G	G			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	107516679	107516679	+	IGR	SNP	C	A	A			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	19043307	19043307	+	IGR	SNP	A	G	G			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	19933393	19933393	+	IGR	SNP	T	C	C			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	69559601	69559601	+	IGR	SNP	G	C	C			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	98128451	98128451	+	IGR	SNP	T	A	A			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	43744024	43744024	+	IGR	SNP	C	G	G			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	45331697	45331697	+	IGR	SNP	G	A	A			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	53969593	53969593	+	IGR	SNP	T	C	C			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	59294868	59294868	+	IGR	SNP	G	T	T			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	64307154	64307154	+	IGR	SNP	T	C	C			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	31090498	31090498	+	IGR	SNP	C	T	T			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	45220930	45220930	+	IGR	DEL	T	-	-			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	94522028	94522028	+	IGR	SNP	A	T	T			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	25465949	25465949	+	IGR	SNP	C	A	A			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	2872662	2872662	+	IGR	SNP	C	A	A			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	32399594	32399594	+	IGR	SNP	A	G	G			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	32416317	32416317	+	IGR	SNP	T	C	C			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	33852528	33852528	+	IGR	SNP	C	A	A			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	59123045	59123045	+	IGR	SNP	G	T	T			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	59788462	59788462	+	IGR	SNP	C	T	T			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	52030537	52030537	+	IGR	SNP	C	G	G			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	60308886	60308887	+	IGR	DNP	GG	TT	TT			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	15917805	15917805	+	IGR	SNP	G	T	T			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	19945784	19945784	+	IGR	SNP	T	C	C			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	20878086	20878086	+	IGR	SNP	T	A	A			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	21144066	21144066	+	IGR	SNP	C	A	A			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	22654526	22654526	+	IGR	SNP	T	A	A			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	29281515	29281515	+	IGR	SNP	T	C	C			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	104469471	104469471	+	IGR	SNP	C	A	A			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	106434318	106434318	+	IGR	DEL	T	-	-	rs72691646	by1000genomes	TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	187532580	187532580	+	IGR	SNP	G	T	T			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	10863130	10863130	+	IGR	SNP	G	T	T			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	11124275	11124275	+	IGR	SNP	T	C	C			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	20617749	20617749	+	IGR	SNP	C	G	G			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	20617789	20617789	+	IGR	SNP	C	T	T			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	22	16350290	16350290	+	IGR	SNP	G	T	T			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	127315778	127315778	+	IGR	SNP	G	C	C			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	132384204	132384204	+	IGR	SNP	A	G	G			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	139170787	139170787	+	IGR	SNP	T	A	A			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	162358239	162358239	+	IGR	SNP	C	A	A			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	234494205	234494205	+	IGR	SNP	C	T	T			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	42047713	42047713	+	IGR	SNP	C	A	A			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	81423592	81423593	+	IGR	DNP	CT	AG	AG			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	91790971	91790971	+	IGR	SNP	C	A	A			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	91944052	91944052	+	IGR	SNP	G	A	A			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	92145365	92145365	+	IGR	SNP	C	G	G			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	95880743	95880743	+	IGR	SNP	A	G	G			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	97693370	97693370	+	IGR	SNP	G	A	A			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	116746321	116746321	+	IGR	SNP	A	T	T			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	155829499	155829499	+	IGR	SNP	C	G	G			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	75397070	75397070	+	IGR	SNP	C	A	A			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	97916368	97916368	+	IGR	DEL	T	-	-			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	104494479	104494479	+	IGR	SNP	C	G	G			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	118496784	118496784	+	IGR	SNP	C	G	G			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	57459085	57459085	+	IGR	SNP	G	A	A			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	63355281	63355281	+	IGR	SNP	G	A	A			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	115106685	115106685	+	IGR	SNP	G	T	T			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	15216304	15216304	+	IGR	SNP	A	T	T			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	82273114	82273114	+	IGR	SNP	C	A	A			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	100498772	100498772	+	IGR	SNP	C	G	G			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	34157985	34157985	+	IGR	SNP	G	T	T			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	54467846	54467846	+	IGR	SNP	C	T	T			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	94495410	94495410	+	IGR	SNP	T	G	G			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	94495461	94495461	+	IGR	SNP	T	A	A			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	119210379	119210379	+	IGR	SNP	G	A	A			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	126936016	126936016	+	IGR	SNP	G	T	T			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	56356745	56356745	+	IGR	SNP	C	A	A			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	65970657	65970657	+	IGR	SNP	G	A	A			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	92099006	92099006	+	IGR	SNP	G	T	T			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	11777931	11777931	+	IGR	SNP	C	G	G			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	125912865	125912865	+	IGR	SNP	A	G	G			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	33827328	33827328	+	IGR	SNP	C	G	G			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	74190010	74190010	+	IGR	SNP	C	G	G			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	82529753	82529753	+	IGR	SNP	C	T	T			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	88801108	88801108	+	IGR	SNP	G	C	C			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	36003735	36003735	+	IGR	SNP	C	T	T			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	43400154	43400154	+	IGR	SNP	C	A	A			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	44131044	44131044	+	IGR	SNP	T	C	C			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	45362603	45362603	+	IGR	SNP	G	T	T			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	45377007	45377007	+	IGR	SNP	C	A	A			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	68357474	68357474	+	IGR	SNP	G	T	T			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	98909190	98909190	+	IGR	SNP	A	C	C			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	106769750	106769750	+	IGR	SNP	G	T	T			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	144712453	144712453	+	IGR	SNP	C	A	A			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	86466113	86466116	+	IGR	DEL	TTCT	-	-	rs7060647	by1000genomes	TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VAV1	7409	broad.mit.edu	37	19	6843227	6843227	+	Intron	SNP	G	A	A			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VPS39	23339	broad.mit.edu	37	15	42470654	42470654	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR6	11180	broad.mit.edu	37	3	49049577	49049578	+	Frame_Shift_Ins	INS	-	G	G			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WRN	7486	broad.mit.edu	37	8	30949243	30949243	+	Intron	SNP	A	G	G			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XRCC1	7515	broad.mit.edu	37	19	44047545	44047545	+	Silent	SNP	C	T	T			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZBTB40	9923	broad.mit.edu	37	1	22848811	22848811	+	Intron	SNP	G	T	T			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZBTB44	29068	broad.mit.edu	37	11	130166195	130166195	+	Intron	SNP	T	C	C			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZBTB5	9925	broad.mit.edu	37	9	37442130	37442130	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZC4H2	55906	broad.mit.edu	37	X	64141711	64141711	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZEB2	9839	broad.mit.edu	37	2	145161475	145161475	+	Intron	SNP	C	A	A			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZFAT	57623	broad.mit.edu	37	8	135621131	135621131	+	Intron	SNP	G	C	C			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZFHX4	79776	broad.mit.edu	37	8	77690784	77690784	+	Intron	SNP	C	A	A			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF16	7564	broad.mit.edu	37	8	146156799	146156799	+	Silent	SNP	T	C	C			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF292	23036	broad.mit.edu	37	6	87969715	87969715	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF329	79673	broad.mit.edu	37	19	58639392	58639392	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF33B	7582	broad.mit.edu	37	10	43078620	43078620	+	Intron	SNP	T	C	C			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF343	79175	broad.mit.edu	37	20	2464776	2464777	+	Frame_Shift_Ins	INS	-	C	C			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF354A	6940	broad.mit.edu	37	5	178139061	178139061	+	Silent	SNP	C	T	T			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF564	163050	broad.mit.edu	37	19	12639124	12639124	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF578	147660	broad.mit.edu	37	19	53015478	53015478	+	3'UTR	SNP	A	G	G			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF599	148103	broad.mit.edu	37	19	35260312	35260312	+	Intron	SNP	T	C	C			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF623	9831	broad.mit.edu	37	8	144733668	144733668	+	3'UTR	SNP	C	T	T			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF69	7620	broad.mit.edu	37	19	12022692	12022693	+	Intron	DNP	GG	TT	TT			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF710	374655	broad.mit.edu	37	15	90623002	90623002	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF772	400720	broad.mit.edu	37	19	57985130	57985130	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF831	128611	broad.mit.edu	37	20	57769519	57769519	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF91	7644	broad.mit.edu	37	19	23544835	23544835	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZP4	57829	broad.mit.edu	37	1	238053654	238053654	+	Intron	SNP	C	T	T			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	30988989	30988989	+	Intron	SNP	C	G	G			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	22476212	22476212	+	Intron	SNP	C	A	A			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	23018532	23018532	+	Intron	SNP	G	A	A			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	20496727	20496727	+	RNA	SNP	C	G	G			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	20496749	20496749	+	RNA	SNP	G	A	A			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	73191783	73191783	+	RNA	SNP	A	G	G			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	32070525	32070525	+	5'Flank	SNP	C	G	G			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	33647499	33647499	+	RNA	SNP	C	A	A			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	54185529	54185529	+	5'Flank	SNP	G	T	T			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	89117776	89117776	+	Intron	SNP	G	A	A			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	90047827	90047827	+	Intron	SNP	C	A	A			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	90211784	90211784	+	RNA	DEL	C	-	-			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	90218766	90218766	+	Intron	SNP	G	C	C			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	90260251	90260251	+	Splice_Site	SNP	C	T	T			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	96079797	96079797	+	5'Flank	SNP	G	T	T			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	159818619	159818619	+	Intron	SNP	C	A	A			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	159820173	159820173	+	Intron	SNP	G	T	T			TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
