Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer
ADAM6	8755	broad.mit.edu	37	14	106714826	106714826	+	Intron	DEL	A	-	-	rs111944422		TCGA-44-5645-01A-01D-1625-08	TCGA-44-5645-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AGRN	375790	broad.mit.edu	37	1	984830	984830	+	Missense_Mutation	SNP	G	A	A			TCGA-44-5645-01A-01D-1625-08	TCGA-44-5645-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AGRN	375790	broad.mit.edu	37	1	984830	984830	+	Missense_Mutation	SNP	G	A	A			TCGA-44-5645-01A-01D-1625-08	TCGA-44-5645-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AHNAK	79026	broad.mit.edu	37	11	62298187	62298187	+	Silent	SNP	G	C	C			TCGA-44-5645-01A-01D-1625-08	TCGA-44-5645-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AHNAK	79026	broad.mit.edu	37	11	62298187	62298187	+	Silent	SNP	G	C	C			TCGA-44-5645-01A-01D-1625-08	TCGA-44-5645-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AP4M1	9179	broad.mit.edu	37	7	99702385	99702385	+	Intron	SNP	T	G	G			TCGA-44-5645-01A-01D-1625-08	TCGA-44-5645-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP8B4	79895	broad.mit.edu	37	15	50211114	50211114	+	Nonsense_Mutation	SNP	G	A	A			TCGA-44-5645-01A-01D-1625-08	TCGA-44-5645-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP8B4	79895	broad.mit.edu	37	15	50211114	50211114	+	Nonsense_Mutation	SNP	G	A	A			TCGA-44-5645-01A-01D-1625-08	TCGA-44-5645-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BRPF1	7862	broad.mit.edu	37	3	9780966	9780966	+	Missense_Mutation	SNP	A	G	G			TCGA-44-5645-01A-01D-1625-08	TCGA-44-5645-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BRPF1	7862	broad.mit.edu	37	3	9780966	9780966	+	Missense_Mutation	SNP	A	G	G			TCGA-44-5645-01A-01D-1625-08	TCGA-44-5645-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C3orf17	25871	broad.mit.edu	37	3	112726994	112726994	+	Intron	SNP	A	C	C			TCGA-44-5645-01A-01D-1625-08	TCGA-44-5645-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C3orf17	25871	broad.mit.edu	37	3	112726994	112726994	+	Intron	SNP	A	C	C			TCGA-44-5645-01A-01D-1625-08	TCGA-44-5645-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C9orf3	84909	broad.mit.edu	37	9	97522766	97522766	+	Missense_Mutation	SNP	C	T	T			TCGA-44-5645-01A-01D-1625-08	TCGA-44-5645-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C9orf3	84909	broad.mit.edu	37	9	97522766	97522766	+	Missense_Mutation	SNP	C	T	T			TCGA-44-5645-01A-01D-1625-08	TCGA-44-5645-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CABLES1	91768	broad.mit.edu	37	18	20814573	20814573	+	Missense_Mutation	SNP	G	A	A			TCGA-44-5645-01A-01D-1625-08	TCGA-44-5645-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CABLES1	91768	broad.mit.edu	37	18	20814573	20814573	+	Missense_Mutation	SNP	G	A	A			TCGA-44-5645-01A-01D-1625-08	TCGA-44-5645-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CAMK2D	817	broad.mit.edu	37	4	114530323	114530323	+	Missense_Mutation	SNP	T	C	C			TCGA-44-5645-01A-01D-1625-08	TCGA-44-5645-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CAMK2D	817	broad.mit.edu	37	4	114530323	114530323	+	Missense_Mutation	SNP	T	C	C			TCGA-44-5645-01A-01D-1625-08	TCGA-44-5645-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDC42EP2	10435	broad.mit.edu	37	11	65088480	65088480	+	Missense_Mutation	SNP	C	A	A			TCGA-44-5645-01A-01D-1625-08	TCGA-44-5645-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDC42EP2	10435	broad.mit.edu	37	11	65088480	65088480	+	Missense_Mutation	SNP	C	A	A			TCGA-44-5645-01A-01D-1625-08	TCGA-44-5645-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDKN2A	1029	broad.mit.edu	37	9	21971077	21971077	+	Missense_Mutation	SNP	A	G	G			TCGA-44-5645-01A-01D-1625-08	TCGA-44-5645-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDKN2A	1029	broad.mit.edu	37	9	21971077	21971077	+	Missense_Mutation	SNP	A	G	G			TCGA-44-5645-01A-01D-1625-08	TCGA-44-5645-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CEP135	9662	broad.mit.edu	37	4	56830457	56830457	+	Silent	SNP	A	C	C			TCGA-44-5645-01A-01D-1625-08	TCGA-44-5645-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CEP135	9662	broad.mit.edu	37	4	56830457	56830457	+	Silent	SNP	A	C	C			TCGA-44-5645-01A-01D-1625-08	TCGA-44-5645-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CIB3	117286	broad.mit.edu	37	19	16284278	16284278	+	Missense_Mutation	SNP	G	T	T			TCGA-44-5645-01A-01D-1625-08	TCGA-44-5645-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CIB3	117286	broad.mit.edu	37	19	16284278	16284278	+	Missense_Mutation	SNP	G	T	T			TCGA-44-5645-01A-01D-1625-08	TCGA-44-5645-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL19A1	1310	broad.mit.edu	37	6	70909299	70909299	+	Intron	SNP	T	A	A			TCGA-44-5645-01A-01D-1625-08	TCGA-44-5645-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL19A1	1310	broad.mit.edu	37	6	70909299	70909299	+	Intron	SNP	T	A	A			TCGA-44-5645-01A-01D-1625-08	TCGA-44-5645-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL27A1	85301	broad.mit.edu	37	9	117071495	117071495	+	Intron	SNP	T	G	G			TCGA-44-5645-01A-01D-1625-08	TCGA-44-5645-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL2A1	1280	broad.mit.edu	37	12	48383461	48383461	+	Intron	SNP	A	G	G			TCGA-44-5645-01A-01D-1625-08	TCGA-44-5645-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL2A1	1280	broad.mit.edu	37	12	48383461	48383461	+	Intron	SNP	A	G	G			TCGA-44-5645-01A-01D-1625-08	TCGA-44-5645-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CROCC	9696	broad.mit.edu	37	1	17181839	17181839	+	Intron	SNP	G	A	A	rs138742267	by1000genomes	TCGA-44-5645-01A-01D-1625-08	TCGA-44-5645-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTSL3	392360	broad.mit.edu	37	9	90388008	90388008	+	Intron	SNP	T	C	C			TCGA-44-5645-01A-01D-1625-08	TCGA-44-5645-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CUX1	1523	broad.mit.edu	37	7	101801866	101801866	+	Missense_Mutation	SNP	C	T	T			TCGA-44-5645-01A-01D-1625-08	TCGA-44-5645-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYFIP2	26999	broad.mit.edu	37	5	156787321	156787321	+	Missense_Mutation	SNP	C	T	T			TCGA-44-5645-01A-01D-1625-08	TCGA-44-5645-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYFIP2	26999	broad.mit.edu	37	5	156787321	156787321	+	Missense_Mutation	SNP	C	T	T			TCGA-44-5645-01A-01D-1625-08	TCGA-44-5645-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP4B1	1580	broad.mit.edu	37	1	47279869	47279869	+	Intron	SNP	C	T	T			TCGA-44-5645-01A-01D-1625-08	TCGA-44-5645-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP4B1	1580	broad.mit.edu	37	1	47279869	47279869	+	Intron	SNP	C	T	T			TCGA-44-5645-01A-01D-1625-08	TCGA-44-5645-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP4F2	8529	broad.mit.edu	37	19	15996864	15996865	+	Splice_Site	INS	-	T	T			TCGA-44-5645-01A-01D-1625-08	TCGA-44-5645-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP4F2	8529	broad.mit.edu	37	19	15996864	15996865	+	Splice_Site	INS	-	T	T			TCGA-44-5645-01A-01D-1625-08	TCGA-44-5645-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DEFB121	245934	broad.mit.edu	37	20	29992817	29992817	+	Missense_Mutation	SNP	A	G	G			TCGA-44-5645-01A-01D-1625-08	TCGA-44-5645-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DEFB121	245934	broad.mit.edu	37	20	29992817	29992817	+	Missense_Mutation	SNP	A	G	G			TCGA-44-5645-01A-01D-1625-08	TCGA-44-5645-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DFFA	1676	broad.mit.edu	37	1	10532457	10532457	+	Missense_Mutation	SNP	G	T	T			TCGA-44-5645-01A-01D-1625-08	TCGA-44-5645-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EDARADD	128178	broad.mit.edu	37	1	236590675	236590676	+	Intron	INS	-	T	T			TCGA-44-5645-01A-01D-1625-08	TCGA-44-5645-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EIF2C1	26523	broad.mit.edu	37	1	36383924	36383924	+	Missense_Mutation	SNP	T	C	C			TCGA-44-5645-01A-01D-1625-08	TCGA-44-5645-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EIF2C1	26523	broad.mit.edu	37	1	36383924	36383924	+	Missense_Mutation	SNP	T	C	C			TCGA-44-5645-01A-01D-1625-08	TCGA-44-5645-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EIF4ENIF1	56478	broad.mit.edu	37	22	31838889	31838889	+	Intron	SNP	G	A	A			TCGA-44-5645-01A-01D-1625-08	TCGA-44-5645-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EIF4ENIF1	56478	broad.mit.edu	37	22	31838889	31838889	+	Intron	SNP	G	A	A			TCGA-44-5645-01A-01D-1625-08	TCGA-44-5645-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPHA3	2042	broad.mit.edu	37	3	89462377	89462377	+	Missense_Mutation	SNP	G	T	T			TCGA-44-5645-01A-01D-1625-08	TCGA-44-5645-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPHA3	2042	broad.mit.edu	37	3	89462377	89462377	+	Missense_Mutation	SNP	G	T	T			TCGA-44-5645-01A-01D-1625-08	TCGA-44-5645-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM75A3	727830	broad.mit.edu	37	9	40701595	40701595	+	Intron	SNP	G	A	A			TCGA-44-5645-01A-01D-1625-08	TCGA-44-5645-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM75A3	727830	broad.mit.edu	37	9	40701595	40701595	+	Intron	SNP	G	A	A			TCGA-44-5645-01A-01D-1625-08	TCGA-44-5645-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FERD3L	222894	broad.mit.edu	37	7	19184591	19184591	+	Missense_Mutation	SNP	G	A	A			TCGA-44-5645-01A-01D-1625-08	TCGA-44-5645-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FERD3L	222894	broad.mit.edu	37	7	19184591	19184591	+	Missense_Mutation	SNP	G	A	A			TCGA-44-5645-01A-01D-1625-08	TCGA-44-5645-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FOLH1	2346	broad.mit.edu	37	11	49178267	49178267	+	Splice_Site	SNP	A	G	G			TCGA-44-5645-01A-01D-1625-08	TCGA-44-5645-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FOLH1	2346	broad.mit.edu	37	11	49178267	49178267	+	Splice_Site	SNP	A	G	G			TCGA-44-5645-01A-01D-1625-08	TCGA-44-5645-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GAGE12J	729396	broad.mit.edu	37	X	49237565	49237566	+	Intron	DEL	TG	-	-	rs143152485		TCGA-44-5645-01A-01D-1625-08	TCGA-44-5645-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GNL3	26354	broad.mit.edu	37	3	52724467	52724467	+	Intron	SNP	G	C	C			TCGA-44-5645-01A-01D-1625-08	TCGA-44-5645-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GNL3	26354	broad.mit.edu	37	3	52724467	52724467	+	Intron	SNP	G	C	C			TCGA-44-5645-01A-01D-1625-08	TCGA-44-5645-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRIN2A	2903	broad.mit.edu	37	16	9858195	9858195	+	Missense_Mutation	SNP	G	A	A			TCGA-44-5645-01A-01D-1625-08	TCGA-44-5645-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRIN2A	2903	broad.mit.edu	37	16	9858195	9858195	+	Missense_Mutation	SNP	G	A	A			TCGA-44-5645-01A-01D-1625-08	TCGA-44-5645-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRM5	2915	broad.mit.edu	37	11	88780796	88780796	+	Missense_Mutation	SNP	T	C	C			TCGA-44-5645-01A-01D-1625-08	TCGA-44-5645-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRM5	2915	broad.mit.edu	37	11	88780796	88780796	+	Missense_Mutation	SNP	T	C	C			TCGA-44-5645-01A-01D-1625-08	TCGA-44-5645-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HAX1	10456	broad.mit.edu	37	1	154245864	154245866	+	In_Frame_Del	DEL	GAA	-	-	rs11556342		TCGA-44-5645-01A-01D-1625-08	TCGA-44-5645-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HLA-G	3135	broad.mit.edu	37	6	29896314	29896314	+	Intron	SNP	G	A	A			TCGA-44-5645-01A-01D-1625-08	TCGA-44-5645-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HLA-G	3135	broad.mit.edu	37	6	29896314	29896314	+	Intron	SNP	G	A	A			TCGA-44-5645-01A-01D-1625-08	TCGA-44-5645-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HOOK1	51361	broad.mit.edu	37	1	60326035	60326035	+	Intron	SNP	A	T	T			TCGA-44-5645-01A-01D-1625-08	TCGA-44-5645-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HYDIN	54768	broad.mit.edu	37	16	70996128	70996128	+	Intron	SNP	G	A	A			TCGA-44-5645-01A-01D-1625-08	TCGA-44-5645-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HYDIN	54768	broad.mit.edu	37	16	71065560	71065560	+	Intron	SNP	C	T	T	rs6499399		TCGA-44-5645-01A-01D-1625-08	TCGA-44-5645-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HYDIN	54768	broad.mit.edu	37	16	70996128	70996128	+	Intron	SNP	G	A	A			TCGA-44-5645-01A-01D-1625-08	TCGA-44-5645-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IGF1R	3480	broad.mit.edu	37	15	99486214	99486214	+	Missense_Mutation	SNP	C	A	A			TCGA-44-5645-01A-01D-1625-08	TCGA-44-5645-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
INADL	10207	broad.mit.edu	37	1	62455859	62455859	+	Nonsense_Mutation	SNP	T	A	A			TCGA-44-5645-01A-01D-1625-08	TCGA-44-5645-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
INADL	10207	broad.mit.edu	37	1	62455859	62455859	+	Nonsense_Mutation	SNP	T	A	A			TCGA-44-5645-01A-01D-1625-08	TCGA-44-5645-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IRF3	3661	broad.mit.edu	37	19	50167985	50167985	+	Silent	SNP	A	G	G			TCGA-44-5645-01A-01D-1625-08	TCGA-44-5645-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IRF3	3661	broad.mit.edu	37	19	50167985	50167985	+	Silent	SNP	A	G	G			TCGA-44-5645-01A-01D-1625-08	TCGA-44-5645-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGA5	3678	broad.mit.edu	37	12	54793313	54793313	+	Intron	SNP	T	A	A			TCGA-44-5645-01A-01D-1625-08	TCGA-44-5645-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGA5	3678	broad.mit.edu	37	12	54793313	54793313	+	Intron	SNP	T	A	A			TCGA-44-5645-01A-01D-1625-08	TCGA-44-5645-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITLN1	55600	broad.mit.edu	37	1	160849029	160849030	+	Intron	DEL	CT	-	-	rs3766358	by1000genomes	TCGA-44-5645-01A-01D-1625-08	TCGA-44-5645-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRTAP21-1	337977	broad.mit.edu	37	21	32127545	32127592	+	In_Frame_Del	DEL	CCATAACCACAGCCATAATGGGAGCCAAACCCACAGCCATACCCACAG	-	-	rs141546899		TCGA-44-5645-01A-01D-1625-08	TCGA-44-5645-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRTAP4-11	653240	broad.mit.edu	37	17	39274424	39274424	+	Missense_Mutation	SNP	G	C	C			TCGA-44-5645-01A-01D-1625-08	TCGA-44-5645-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMB1	3912	broad.mit.edu	37	7	107626714	107626714	+	Missense_Mutation	SNP	G	A	A			TCGA-44-5645-01A-01D-1625-08	TCGA-44-5645-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LBR	3930	broad.mit.edu	37	1	225600352	225600352	+	Intron	DEL	A	-	-			TCGA-44-5645-01A-01D-1625-08	TCGA-44-5645-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC200030	200030	broad.mit.edu	37	1	148253044	148253044	+	Intron	SNP	A	T	T			TCGA-44-5645-01A-01D-1625-08	TCGA-44-5645-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC285045	285045	broad.mit.edu	37	2	33141468	33141468	+	Intron	SNP	A	G	G	rs141897024		TCGA-44-5645-01A-01D-1625-08	TCGA-44-5645-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC442459	442459	broad.mit.edu	37	X	98974961	98974961	+	RNA	SNP	G	A	A			TCGA-44-5645-01A-01D-1625-08	TCGA-44-5645-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC442459	442459	broad.mit.edu	37	X	98974961	98974961	+	RNA	SNP	G	A	A			TCGA-44-5645-01A-01D-1625-08	TCGA-44-5645-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC642846	642846	broad.mit.edu	37	12	9465529	9465529	+	Intron	SNP	C	T	T			TCGA-44-5645-01A-01D-1625-08	TCGA-44-5645-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC653653	653653	broad.mit.edu	37	17	58179841	58179841	+	Silent	SNP	A	G	G			TCGA-44-5645-01A-01D-1625-08	TCGA-44-5645-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC653653	653653	broad.mit.edu	37	17	58179841	58179841	+	Silent	SNP	A	G	G			TCGA-44-5645-01A-01D-1625-08	TCGA-44-5645-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LPCAT1	79888	broad.mit.edu	37	5	1481214	1481214	+	Intron	SNP	A	C	C			TCGA-44-5645-01A-01D-1625-08	TCGA-44-5645-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LPCAT1	79888	broad.mit.edu	37	5	1481214	1481214	+	Intron	SNP	A	C	C			TCGA-44-5645-01A-01D-1625-08	TCGA-44-5645-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAN2A1	4124	broad.mit.edu	37	5	109091091	109091091	+	Missense_Mutation	SNP	A	G	G			TCGA-44-5645-01A-01D-1625-08	TCGA-44-5645-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAN2A1	4124	broad.mit.edu	37	5	109091091	109091091	+	Missense_Mutation	SNP	A	G	G			TCGA-44-5645-01A-01D-1625-08	TCGA-44-5645-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MANEAL	149175	broad.mit.edu	37	1	38260316	38260316	+	Silent	SNP	C	G	G			TCGA-44-5645-01A-01D-1625-08	TCGA-44-5645-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MECP2	4204	broad.mit.edu	37	X	153357589	153357589	+	Intron	SNP	C	A	A			TCGA-44-5645-01A-01D-1625-08	TCGA-44-5645-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MED13L	23389	broad.mit.edu	37	12	116444229	116444229	+	Intron	SNP	T	C	C			TCGA-44-5645-01A-01D-1625-08	TCGA-44-5645-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MED13L	23389	broad.mit.edu	37	12	116444229	116444229	+	Intron	SNP	T	C	C			TCGA-44-5645-01A-01D-1625-08	TCGA-44-5645-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
METAP1	23173	broad.mit.edu	37	4	99982307	99982307	+	Missense_Mutation	SNP	G	A	A			TCGA-44-5645-01A-01D-1625-08	TCGA-44-5645-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
METAP1	23173	broad.mit.edu	37	4	99982307	99982307	+	Missense_Mutation	SNP	G	A	A			TCGA-44-5645-01A-01D-1625-08	TCGA-44-5645-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
METTL1	4234	broad.mit.edu	37	12	58165040	58165040	+	Silent	SNP	G	A	A			TCGA-44-5645-01A-01D-1625-08	TCGA-44-5645-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MGC72080	389538	broad.mit.edu	37	7	97535585	97535585	+	Intron	SNP	G	A	A			TCGA-44-5645-01A-01D-1625-08	TCGA-44-5645-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MINA	84864	broad.mit.edu	37	3	97666318	97666318	+	Intron	SNP	C	T	T			TCGA-44-5645-01A-01D-1625-08	TCGA-44-5645-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MXD4	10608	broad.mit.edu	37	4	2252432	2252432	+	Intron	SNP	G	C	C			TCGA-44-5645-01A-01D-1625-08	TCGA-44-5645-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MXD4	10608	broad.mit.edu	37	4	2252432	2252432	+	Intron	SNP	G	C	C			TCGA-44-5645-01A-01D-1625-08	TCGA-44-5645-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH7B	57644	broad.mit.edu	37	20	33587960	33587960	+	Intron	SNP	A	T	T			TCGA-44-5645-01A-01D-1625-08	TCGA-44-5645-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBPF10	100132406	broad.mit.edu	37	1	145492440	145492440	+	Intron	SNP	G	A	A			TCGA-44-5645-01A-01D-1625-08	TCGA-44-5645-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBPF10	100132406	broad.mit.edu	37	1	145492440	145492440	+	Intron	SNP	G	A	A			TCGA-44-5645-01A-01D-1625-08	TCGA-44-5645-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NF2	4771	broad.mit.edu	37	22	30078944	30078944	+	Intron	SNP	C	T	T			TCGA-44-5645-01A-01D-1625-08	TCGA-44-5645-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NF2	4771	broad.mit.edu	37	22	30078944	30078944	+	Intron	SNP	C	T	T			TCGA-44-5645-01A-01D-1625-08	TCGA-44-5645-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NKAIN3	286183	broad.mit.edu	37	8	63502385	63502385	+	Intron	SNP	A	T	T			TCGA-44-5645-01A-01D-1625-08	TCGA-44-5645-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NOP56	10528	broad.mit.edu	37	20	2633826	2633826	+	Intron	SNP	G	A	A			TCGA-44-5645-01A-01D-1625-08	TCGA-44-5645-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NXF1	10482	broad.mit.edu	37	11	62569570	62569570	+	Intron	SNP	G	A	A			TCGA-44-5645-01A-01D-1625-08	TCGA-44-5645-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NXF1	10482	broad.mit.edu	37	11	62569570	62569570	+	Intron	SNP	G	A	A			TCGA-44-5645-01A-01D-1625-08	TCGA-44-5645-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ODZ2	57451	broad.mit.edu	37	5	167642247	167642247	+	Missense_Mutation	SNP	G	T	T			TCGA-44-5645-01A-01D-1625-08	TCGA-44-5645-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE4DIP	9659	broad.mit.edu	37	1	144918885	144918885	+	Missense_Mutation	SNP	T	C	C			TCGA-44-5645-01A-01D-1625-08	TCGA-44-5645-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE4DIP	9659	broad.mit.edu	37	1	144918885	144918885	+	Missense_Mutation	SNP	T	C	C			TCGA-44-5645-01A-01D-1625-08	TCGA-44-5645-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PI4KA	5297	broad.mit.edu	37	22	21083678	21083678	+	Silent	SNP	C	G	G			TCGA-44-5645-01A-01D-1625-08	TCGA-44-5645-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PI4KA	5297	broad.mit.edu	37	22	21083678	21083678	+	Silent	SNP	C	G	G			TCGA-44-5645-01A-01D-1625-08	TCGA-44-5645-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIK3CA	5290	broad.mit.edu	37	3	178952085	178952085	+	Missense_Mutation	SNP	A	G	G	rs121913279		TCGA-44-5645-01A-01D-1625-08	TCGA-44-5645-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIK3CA	5290	broad.mit.edu	37	3	178952085	178952085	+	Missense_Mutation	SNP	A	G	G	rs121913279		TCGA-44-5645-01A-01D-1625-08	TCGA-44-5645-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSMB11	122706	broad.mit.edu	37	14	23512132	23512132	+	Missense_Mutation	SNP	G	T	T			TCGA-44-5645-01A-01D-1625-08	TCGA-44-5645-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSMD1	5707	broad.mit.edu	37	2	231927201	231927201	+	Intron	SNP	A	G	G			TCGA-44-5645-01A-01D-1625-08	TCGA-44-5645-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSMD1	5707	broad.mit.edu	37	2	231927201	231927201	+	Intron	SNP	A	G	G			TCGA-44-5645-01A-01D-1625-08	TCGA-44-5645-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRO	5800	broad.mit.edu	37	12	15669681	15669681	+	Intron	SNP	G	A	A			TCGA-44-5645-01A-01D-1625-08	TCGA-44-5645-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRO	5800	broad.mit.edu	37	12	15669681	15669681	+	Intron	SNP	G	A	A			TCGA-44-5645-01A-01D-1625-08	TCGA-44-5645-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RBP3	5949	broad.mit.edu	37	10	48389514	48389514	+	Missense_Mutation	SNP	A	G	G			TCGA-44-5645-01A-01D-1625-08	TCGA-44-5645-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RBP3	5949	broad.mit.edu	37	10	48389514	48389514	+	Missense_Mutation	SNP	A	G	G			TCGA-44-5645-01A-01D-1625-08	TCGA-44-5645-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RGS3	5998	broad.mit.edu	37	9	116356199	116356199	+	Intron	SNP	C	T	T			TCGA-44-5645-01A-01D-1625-08	TCGA-44-5645-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RGS3	5998	broad.mit.edu	37	9	116356199	116356199	+	Intron	SNP	C	T	T			TCGA-44-5645-01A-01D-1625-08	TCGA-44-5645-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SAGE1	55511	broad.mit.edu	37	X	134987534	134987534	+	Missense_Mutation	SNP	T	C	C			TCGA-44-5645-01A-01D-1625-08	TCGA-44-5645-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCN5A	6331	broad.mit.edu	37	3	38592973	38592973	+	Silent	SNP	T	A	A			TCGA-44-5645-01A-01D-1625-08	TCGA-44-5645-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCN5A	6331	broad.mit.edu	37	3	38592973	38592973	+	Silent	SNP	T	A	A			TCGA-44-5645-01A-01D-1625-08	TCGA-44-5645-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SDHC	6391	broad.mit.edu	37	1	161326722	161326722	+	Intron	SNP	C	T	T			TCGA-44-5645-01A-01D-1625-08	TCGA-44-5645-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SKIV2L2	23517	broad.mit.edu	37	5	54701406	54701406	+	Nonsense_Mutation	SNP	G	T	T			TCGA-44-5645-01A-01D-1625-08	TCGA-44-5645-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC24A2	25769	broad.mit.edu	37	9	19786259	19786259	+	Silent	SNP	G	A	A	rs147285634	by1000genomes	TCGA-44-5645-01A-01D-1625-08	TCGA-44-5645-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC24A2	25769	broad.mit.edu	37	9	19786259	19786259	+	Silent	SNP	G	A	A	rs147285634	by1000genomes	TCGA-44-5645-01A-01D-1625-08	TCGA-44-5645-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC25A43	203427	broad.mit.edu	37	X	118543989	118543989	+	Intron	SNP	T	A	A			TCGA-44-5645-01A-01D-1625-08	TCGA-44-5645-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC25A43	203427	broad.mit.edu	37	X	118543989	118543989	+	Intron	SNP	T	A	A			TCGA-44-5645-01A-01D-1625-08	TCGA-44-5645-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC35E4	339665	broad.mit.edu	37	22	31042478	31042478	+	Intron	SNP	C	T	T	rs141888812	by1000genomes	TCGA-44-5645-01A-01D-1625-08	TCGA-44-5645-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC35E4	339665	broad.mit.edu	37	22	31042478	31042478	+	Intron	SNP	C	T	T	rs141888812	by1000genomes	TCGA-44-5645-01A-01D-1625-08	TCGA-44-5645-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC44A5	204962	broad.mit.edu	37	1	75685034	75685034	+	Intron	SNP	A	G	G			TCGA-44-5645-01A-01D-1625-08	TCGA-44-5645-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC44A5	204962	broad.mit.edu	37	1	75685034	75685034	+	Intron	SNP	A	G	G			TCGA-44-5645-01A-01D-1625-08	TCGA-44-5645-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC7A3	84889	broad.mit.edu	37	X	70147953	70147953	+	Intron	SNP	C	T	T			TCGA-44-5645-01A-01D-1625-08	TCGA-44-5645-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC7A3	84889	broad.mit.edu	37	X	70147953	70147953	+	Intron	SNP	C	T	T			TCGA-44-5645-01A-01D-1625-08	TCGA-44-5645-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC9A3	6550	broad.mit.edu	37	5	484613	484613	+	Intron	SNP	C	T	T			TCGA-44-5645-01A-01D-1625-08	TCGA-44-5645-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC9A3	6550	broad.mit.edu	37	5	484613	484613	+	Intron	SNP	C	T	T			TCGA-44-5645-01A-01D-1625-08	TCGA-44-5645-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC9A5	6553	broad.mit.edu	37	16	67298944	67298944	+	Missense_Mutation	SNP	A	C	C			TCGA-44-5645-01A-01D-1625-08	TCGA-44-5645-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STAU1	6780	broad.mit.edu	37	20	47782357	47782358	+	Intron	DEL	CT	-	-	rs72593076		TCGA-44-5645-01A-01D-1625-08	TCGA-44-5645-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SUMF1	285362	broad.mit.edu	37	3	4458778	4458778	+	Intron	SNP	G	A	A			TCGA-44-5645-01A-01D-1625-08	TCGA-44-5645-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SUMF1	285362	broad.mit.edu	37	3	4458778	4458778	+	Intron	SNP	G	A	A			TCGA-44-5645-01A-01D-1625-08	TCGA-44-5645-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TACC3	10460	broad.mit.edu	37	4	1746125	1746126	+	Intron	INS	-	T	T	rs141214473	by1000genomes	TCGA-44-5645-01A-01D-1625-08	TCGA-44-5645-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBP	6908	broad.mit.edu	37	6	170871052	170871052	+	Silent	SNP	G	A	A	rs112083427		TCGA-44-5645-01A-01D-1625-08	TCGA-44-5645-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TECPR2	9895	broad.mit.edu	37	14	102964630	102964630	+	3'UTR	SNP	G	A	A	rs138500705	by1000genomes	TCGA-44-5645-01A-01D-1625-08	TCGA-44-5645-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TGIF2LX	90316	broad.mit.edu	37	X	89177431	89177431	+	Missense_Mutation	SNP	G	A	A			TCGA-44-5645-01A-01D-1625-08	TCGA-44-5645-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TGIF2LX	90316	broad.mit.edu	37	X	89177431	89177431	+	Missense_Mutation	SNP	G	A	A			TCGA-44-5645-01A-01D-1625-08	TCGA-44-5645-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TKTL1	8277	broad.mit.edu	37	X	153553709	153553709	+	Nonsense_Mutation	SNP	C	T	T			TCGA-44-5645-01A-01D-1625-08	TCGA-44-5645-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TKTL1	8277	broad.mit.edu	37	X	153553709	153553709	+	Nonsense_Mutation	SNP	C	T	T			TCGA-44-5645-01A-01D-1625-08	TCGA-44-5645-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TLR6	10333	broad.mit.edu	37	4	38830532	38830532	+	Missense_Mutation	SNP	G	A	A			TCGA-44-5645-01A-01D-1625-08	TCGA-44-5645-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TLR6	10333	broad.mit.edu	37	4	38830532	38830532	+	Missense_Mutation	SNP	G	A	A			TCGA-44-5645-01A-01D-1625-08	TCGA-44-5645-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TP53	7157	broad.mit.edu	37	17	7573967	7573967	+	Nonsense_Mutation	SNP	G	A	A			TCGA-44-5645-01A-01D-1625-08	TCGA-44-5645-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TP53	7157	broad.mit.edu	37	17	7573967	7573967	+	Nonsense_Mutation	SNP	G	A	A			TCGA-44-5645-01A-01D-1625-08	TCGA-44-5645-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRAFD1	10906	broad.mit.edu	37	12	112579878	112579879	+	Intron	INS	-	T	T			TCGA-44-5645-01A-01D-1625-08	TCGA-44-5645-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTLL12	23170	broad.mit.edu	37	22	43564118	43564118	+	Missense_Mutation	SNP	C	T	T			TCGA-44-5645-01A-01D-1625-08	TCGA-44-5645-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTLL12	23170	broad.mit.edu	37	22	43564118	43564118	+	Missense_Mutation	SNP	C	T	T			TCGA-44-5645-01A-01D-1625-08	TCGA-44-5645-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBQLN1	29979	broad.mit.edu	37	9	86276788	86276788	+	Missense_Mutation	SNP	G	T	T			TCGA-44-5645-01A-01D-1625-08	TCGA-44-5645-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UNC13A	23025	broad.mit.edu	37	19	17752381	17752381	+	Intron	SNP	A	G	G			TCGA-44-5645-01A-01D-1625-08	TCGA-44-5645-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UNC13A	23025	broad.mit.edu	37	19	17752381	17752381	+	Intron	SNP	A	G	G			TCGA-44-5645-01A-01D-1625-08	TCGA-44-5645-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	42400455	42400455	+	IGR	DEL	T	-	-	rs71264011		TCGA-44-5645-01A-01D-1625-08	TCGA-44-5645-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	42528030	42528030	+	IGR	DEL	G	-	-			TCGA-44-5645-01A-01D-1625-08	TCGA-44-5645-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	48534088	48534088	+	IGR	SNP	C	A	A			TCGA-44-5645-01A-01D-1625-08	TCGA-44-5645-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	96102836	96102836	+	IGR	SNP	T	C	C			TCGA-44-5645-01A-01D-1625-08	TCGA-44-5645-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	26655019	26655019	+	IGR	SNP	G	C	C			TCGA-44-5645-01A-01D-1625-08	TCGA-44-5645-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	120114198	120114198	+	IGR	SNP	A	G	G			TCGA-44-5645-01A-01D-1625-08	TCGA-44-5645-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	149050380	149050380	+	IGR	SNP	C	A	A			TCGA-44-5645-01A-01D-1625-08	TCGA-44-5645-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	165933911	165933911	+	IGR	SNP	C	T	T			TCGA-44-5645-01A-01D-1625-08	TCGA-44-5645-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	99284891	99284891	+	IGR	SNP	C	T	T			TCGA-44-5645-01A-01D-1625-08	TCGA-44-5645-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	96102836	96102836	+	IGR	SNP	T	C	C			TCGA-44-5645-01A-01D-1625-08	TCGA-44-5645-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	26655019	26655019	+	IGR	SNP	G	C	C			TCGA-44-5645-01A-01D-1625-08	TCGA-44-5645-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	149050380	149050380	+	IGR	SNP	C	A	A			TCGA-44-5645-01A-01D-1625-08	TCGA-44-5645-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	91778045	91778045	+	IGR	SNP	G	T	T			TCGA-44-5645-01A-01D-1625-08	TCGA-44-5645-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	165933911	165933911	+	IGR	SNP	C	T	T			TCGA-44-5645-01A-01D-1625-08	TCGA-44-5645-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	99284891	99284891	+	IGR	SNP	C	T	T			TCGA-44-5645-01A-01D-1625-08	TCGA-44-5645-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WBP2NL	164684	broad.mit.edu	37	22	42415801	42415801	+	Missense_Mutation	SNP	C	T	T			TCGA-44-5645-01A-01D-1625-08	TCGA-44-5645-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WBP2NL	164684	broad.mit.edu	37	22	42415801	42415801	+	Missense_Mutation	SNP	C	T	T			TCGA-44-5645-01A-01D-1625-08	TCGA-44-5645-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZMIZ2	83637	broad.mit.edu	37	7	44806175	44806175	+	Silent	SNP	G	A	A			TCGA-44-5645-01A-01D-1625-08	TCGA-44-5645-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZMIZ2	83637	broad.mit.edu	37	7	44806175	44806175	+	Silent	SNP	G	A	A			TCGA-44-5645-01A-01D-1625-08	TCGA-44-5645-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF561	93134	broad.mit.edu	37	19	9724871	9724871	+	Intron	SNP	G	A	A			TCGA-44-5645-01A-01D-1625-08	TCGA-44-5645-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF561	93134	broad.mit.edu	37	19	9724871	9724871	+	Intron	SNP	G	A	A			TCGA-44-5645-01A-01D-1625-08	TCGA-44-5645-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF638	27332	broad.mit.edu	37	2	71660180	71660180	+	Intron	SNP	G	T	T			TCGA-44-5645-01A-01D-1625-08	TCGA-44-5645-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF638	27332	broad.mit.edu	37	2	71660180	71660180	+	Intron	SNP	G	T	T			TCGA-44-5645-01A-01D-1625-08	TCGA-44-5645-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	66516580	66516580	+	Intron	SNP	G	A	A			TCGA-44-5645-01A-01D-1625-08	TCGA-44-5645-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
