Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer
A2BP1	54715	broad.mit.edu	37	16	7760688	7760688	+	Missense_Mutation	SNP	C	A	A			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCB11	8647	broad.mit.edu	37	2	169869807	169869807	+	Missense_Mutation	SNP	T	C	C			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCG2	9429	broad.mit.edu	37	4	89052998	89052998	+	Missense_Mutation	SNP	G	T	T			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACTG2	72	broad.mit.edu	37	2	74129498	74129499	+	Nonsense_Mutation	DNP	GG	TT	TT			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAD1	132612	broad.mit.edu	37	4	123304906	123304906	+	Intron	SNP	G	A	A			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAD1	132612	broad.mit.edu	37	4	123333934	123333934	+	Missense_Mutation	SNP	C	A	A			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM20	8748	broad.mit.edu	37	14	70991265	70991265	+	Missense_Mutation	SNP	C	A	A			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM22	53616	broad.mit.edu	37	7	87758043	87758043	+	Intron	SNP	G	T	T			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM6	8755	broad.mit.edu	37	14	107099321	107099321	+	RNA	SNP	C	A	A			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS12	81792	broad.mit.edu	37	5	33616275	33616275	+	Intron	SNP	C	A	A			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS14	140766	broad.mit.edu	37	10	72511354	72511354	+	Nonsense_Mutation	SNP	G	T	T			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS7	11173	broad.mit.edu	37	15	79080756	79080756	+	Intron	SNP	G	T	T			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADCY2	108	broad.mit.edu	37	5	7772948	7772948	+	Intron	SNP	G	T	T			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADCY4	196883	broad.mit.edu	37	14	24788542	24788542	+	Missense_Mutation	SNP	G	T	T			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADCY4	196883	broad.mit.edu	37	14	24793584	24793584	+	Missense_Mutation	SNP	C	A	A			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADCY7	113	broad.mit.edu	37	16	50346146	50346146	+	Intron	SNP	T	A	A			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AFF2	2334	broad.mit.edu	37	X	148037839	148037839	+	Missense_Mutation	SNP	C	A	A			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AFG3L2	10939	broad.mit.edu	37	18	12353157	12353157	+	Missense_Mutation	SNP	C	A	A			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AGBL1	123624	broad.mit.edu	37	15	86702071	86702071	+	Intron	SNP	G	T	T			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AGBL2	79841	broad.mit.edu	37	11	47689012	47689012	+	Intron	SNP	C	T	T			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AGGF1	55109	broad.mit.edu	37	5	76342310	76342310	+	Missense_Mutation	SNP	A	G	G			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AKAP13	11214	broad.mit.edu	37	15	86076960	86076960	+	Missense_Mutation	SNP	T	G	G			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AKAP9	10142	broad.mit.edu	37	7	91708576	91708576	+	Missense_Mutation	SNP	C	A	A			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AKR1D1	6718	broad.mit.edu	37	7	137790082	137790082	+	Missense_Mutation	SNP	G	C	C			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALS2CR4	65062	broad.mit.edu	37	2	202494592	202494592	+	Intron	SNP	T	A	A			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALS2CR8	79800	broad.mit.edu	37	2	203831589	203831589	+	Intron	DEL	A	-	-			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AMPD1	270	broad.mit.edu	37	1	115231538	115231538	+	Intron	SNP	G	T	T	rs80270587	by1000genomes	TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANGPT1	284	broad.mit.edu	37	8	108306234	108306234	+	Missense_Mutation	SNP	C	A	A			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANK1	286	broad.mit.edu	37	8	41550708	41550708	+	Missense_Mutation	SNP	G	T	T			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANK2	287	broad.mit.edu	37	4	114264221	114264221	+	Missense_Mutation	SNP	C	A	A			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKRD30A	91074	broad.mit.edu	37	10	37423048	37423048	+	Intron	SNP	G	T	T			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANO4	121601	broad.mit.edu	37	12	101510519	101510519	+	Missense_Mutation	SNP	G	A	A			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANO6	196527	broad.mit.edu	37	12	45803119	45803119	+	Intron	SNP	A	G	G			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
APPBP2	10513	broad.mit.edu	37	17	58541402	58541402	+	Missense_Mutation	SNP	C	T	T			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARAP2	116984	broad.mit.edu	37	4	36161127	36161127	+	Missense_Mutation	SNP	C	A	A			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARAP3	64411	broad.mit.edu	37	5	141049415	141049415	+	Intron	SNP	C	A	A			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGAP25	9938	broad.mit.edu	37	2	69053120	69053120	+	Missense_Mutation	SNP	C	A	A			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARPP21	10777	broad.mit.edu	37	3	35833950	35833950	+	Missense_Mutation	SNP	C	A	A			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARRB2	409	broad.mit.edu	37	17	4624420	4624420	+	3'UTR	SNP	C	T	T			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASB14	142686	broad.mit.edu	37	3	57303524	57303524	+	3'UTR	SNP	G	T	T			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASCC2	84164	broad.mit.edu	37	22	30186594	30186594	+	Intron	SNP	C	A	A			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASTN1	460	broad.mit.edu	37	1	176845741	176845741	+	Missense_Mutation	SNP	C	A	A			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATAD2	29028	broad.mit.edu	37	8	124357109	124357110	+	Intron	DNP	CC	AA	AA			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATIC	471	broad.mit.edu	37	2	216214301	216214301	+	Missense_Mutation	SNP	G	T	T			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP1A3	478	broad.mit.edu	37	19	42492394	42492394	+	Intron	SNP	C	A	A			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP1B4	23439	broad.mit.edu	37	X	119505001	119505001	+	Missense_Mutation	SNP	C	G	G			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP7A	538	broad.mit.edu	37	X	77294263	77294263	+	Intron	SNP	A	T	T			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
B3GNT2	10678	broad.mit.edu	37	2	62449068	62449068	+	Intron	SNP	G	T	T			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BAI3	577	broad.mit.edu	37	6	69349092	69349092	+	Missense_Mutation	SNP	G	T	T			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BAT2	7916	broad.mit.edu	37	6	31598896	31598896	+	Intron	SNP	C	A	A			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BCLAF1	9774	broad.mit.edu	37	6	136599712	136599712	+	Missense_Mutation	SNP	T	C	C			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BCOR	54880	broad.mit.edu	37	X	39922714	39922714	+	Intron	SNP	T	G	G			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BEND2	139105	broad.mit.edu	37	X	18195540	18195540	+	Intron	SNP	T	C	C			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BIN1	274	broad.mit.edu	37	2	127810923	127810923	+	Intron	SNP	G	T	T			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C12orf59	120939	broad.mit.edu	37	12	10332281	10332281	+	Intron	SNP	T	A	A			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C12orf5	57103	broad.mit.edu	37	12	4430432	4430432	+	5'UTR	SNP	G	T	T			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C13orf33	84935	broad.mit.edu	37	13	31498491	31498491	+	Silent	SNP	A	T	T			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C17orf70	80233	broad.mit.edu	37	17	79517597	79517597	+	Missense_Mutation	SNP	T	C	C			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf129	80133	broad.mit.edu	37	1	170961380	170961380	+	Missense_Mutation	SNP	G	C	C			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C20orf103	24141	broad.mit.edu	37	20	9497022	9497022	+	Intron	SNP	G	A	A			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C20orf151	140893	broad.mit.edu	37	20	60991178	60991178	+	Intron	SNP	G	T	T			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C20orf20	55257	broad.mit.edu	37	20	61430905	61430905	+	Missense_Mutation	SNP	C	G	G			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C3orf1	51300	broad.mit.edu	37	3	119242481	119242481	+	Missense_Mutation	SNP	C	G	G			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C4orf45	152940	broad.mit.edu	37	4	159928840	159928840	+	Intron	SNP	G	T	T			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C6orf118	168090	broad.mit.edu	37	6	165715038	165715038	+	Intron	SNP	C	A	A			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C7orf10	79783	broad.mit.edu	37	7	40789127	40789141	+	Intron	DEL	CCTTTCTTTATTAAT	-	-			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C7orf34	135927	broad.mit.edu	37	7	142637620	142637620	+	Silent	SNP	G	C	C			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C7orf42	55069	broad.mit.edu	37	7	66407016	66407016	+	Intron	SNP	A	T	T			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CALHM1	255022	broad.mit.edu	37	10	105217833	105217833	+	Intron	SNP	C	G	G			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CAPN6	827	broad.mit.edu	37	X	110490609	110490609	+	Missense_Mutation	SNP	G	A	A			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CASP1	834	broad.mit.edu	37	11	104905937	104905937	+	Intron	SNP	G	C	C			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CASP5	838	broad.mit.edu	37	11	104874001	104874001	+	Missense_Mutation	SNP	C	A	A			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CBLL1	79872	broad.mit.edu	37	7	107399240	107399240	+	Missense_Mutation	SNP	C	T	T			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC56	28958	broad.mit.edu	37	17	40948087	40948087	+	Silent	SNP	C	T	T			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC74A	90557	broad.mit.edu	37	2	132290415	132290415	+	Intron	SNP	T	C	C			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC74B	91409	broad.mit.edu	37	2	130900021	130900021	+	Intron	SNP	G	A	A			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC88B	283234	broad.mit.edu	37	11	64111737	64111737	+	Missense_Mutation	SNP	C	G	G			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC96	257236	broad.mit.edu	37	4	7043210	7043210	+	Nonsense_Mutation	SNP	C	A	A			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCM2	83605	broad.mit.edu	37	7	45115287	45115287	+	Intron	SNP	G	C	C			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCT6B	10693	broad.mit.edu	37	17	33259426	33259426	+	Missense_Mutation	SNP	C	A	A			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD163L1	283316	broad.mit.edu	37	12	7521434	7521434	+	Intron	SNP	A	C	C			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD247	919	broad.mit.edu	37	1	167401003	167401003	+	Intron	SNP	G	C	C			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD86	942	broad.mit.edu	37	3	121774257	121774257	+	5'UTR	SNP	C	T	T			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH12	1010	broad.mit.edu	37	5	21883649	21883649	+	Intron	SNP	C	T	T			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH7	1005	broad.mit.edu	37	18	63492008	63492008	+	Missense_Mutation	SNP	G	T	T			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CELF2	10659	broad.mit.edu	37	10	11356044	11356044	+	Intron	SNP	C	G	G			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CELF2	10659	broad.mit.edu	37	10	11356047	11356047	+	Intron	SNP	G	T	T	rs146786975	by1000genomes	TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CEP250	11190	broad.mit.edu	37	20	34091626	34091626	+	Missense_Mutation	SNP	G	C	C			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHD8	57680	broad.mit.edu	37	14	21873365	21873365	+	Intron	SNP	C	A	A			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHST3	9469	broad.mit.edu	37	10	73765502	73765502	+	5'UTR	SNP	T	A	A			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHUK	1147	broad.mit.edu	37	10	101977791	101977791	+	Silent	SNP	T	A	A			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLCA1	1179	broad.mit.edu	37	1	86954792	86954792	+	Silent	SNP	C	A	A			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLCN2	1181	broad.mit.edu	37	3	184069701	184069701	+	Intron	SNP	C	A	A			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLCNKB	1188	broad.mit.edu	37	1	16377113	16377113	+	Intron	SNP	G	T	T			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLDN11	5010	broad.mit.edu	37	3	170140986	170140986	+	Missense_Mutation	SNP	G	T	T			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CMKLR1	1240	broad.mit.edu	37	12	108686090	108686090	+	Missense_Mutation	SNP	T	A	A			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNDP2	55748	broad.mit.edu	37	18	72183648	72183648	+	Intron	SNP	G	T	T			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNKSR2	22866	broad.mit.edu	37	X	21627613	21627613	+	Missense_Mutation	SNP	G	C	C			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTNAP2	26047	broad.mit.edu	37	7	146741008	146741008	+	Nonsense_Mutation	SNP	G	T	T			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTNAP2	26047	broad.mit.edu	37	7	146829427	146829427	+	Missense_Mutation	SNP	C	A	A			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTNAP2	26047	broad.mit.edu	37	7	147259256	147259256	+	Missense_Mutation	SNP	T	A	A			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTNAP2	26047	broad.mit.edu	37	7	147914435	147914435	+	Silent	SNP	A	G	G			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL16A1	1307	broad.mit.edu	37	1	32163648	32163648	+	Missense_Mutation	SNP	C	T	T			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL25A1	84570	broad.mit.edu	37	4	109748433	109748433	+	Intron	SNP	C	G	G			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL29A1	256076	broad.mit.edu	37	3	130095427	130095427	+	Missense_Mutation	SNP	G	T	T			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL3A1	1281	broad.mit.edu	37	2	189839273	189839273	+	Missense_Mutation	SNP	A	G	G			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL3A1	1281	broad.mit.edu	37	2	189859095	189859095	+	Intron	SNP	T	A	A			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL4A5	1287	broad.mit.edu	37	X	107827715	107827715	+	Missense_Mutation	SNP	G	T	T	rs104886092		TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL5A2	1290	broad.mit.edu	37	2	189904155	189904155	+	Silent	SNP	C	A	A			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL7A1	1294	broad.mit.edu	37	3	48617237	48617237	+	Missense_Mutation	SNP	C	A	A			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL9A2	1298	broad.mit.edu	37	1	40779956	40779956	+	Intron	SNP	G	A	A			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COLEC11	78989	broad.mit.edu	37	2	3673774	3673774	+	Intron	SNP	G	T	T			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPEB1	64506	broad.mit.edu	37	15	83215282	83215282	+	Intron	SNP	G	T	T			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD1	64478	broad.mit.edu	37	8	3216497	3216497	+	Intron	SNP	C	T	T			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD3	114788	broad.mit.edu	37	8	114448979	114448979	+	Missense_Mutation	SNP	C	A	A			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD3	114788	broad.mit.edu	37	8	114449164	114449164	+	5'UTR	SNP	G	C	C			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTNND2	1501	broad.mit.edu	37	5	11384919	11384919	+	Silent	SNP	G	T	T			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CUBN	8029	broad.mit.edu	37	10	16975090	16975090	+	Silent	SNP	T	A	A			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CUL2	8453	broad.mit.edu	37	10	35349836	35349836	+	Missense_Mutation	SNP	T	A	A			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CUL4B	8450	broad.mit.edu	37	X	119668355	119668355	+	Silent	SNP	G	T	T			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CXorf59	286464	broad.mit.edu	37	X	36162711	36162711	+	Missense_Mutation	SNP	G	C	C			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CXorf59	286464	broad.mit.edu	37	X	36162841	36162842	+	Frame_Shift_Ins	INS	-	T	T			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYLC1	1538	broad.mit.edu	37	X	83128659	83128659	+	Missense_Mutation	SNP	A	G	G			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP39A1	51302	broad.mit.edu	37	6	46610099	46610099	+	Intron	SNP	C	A	A			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DARS	1615	broad.mit.edu	37	2	136670155	136670155	+	Intron	SNP	C	T	T			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCAF8L2	347442	broad.mit.edu	37	X	27765783	27765783	+	Missense_Mutation	SNP	G	C	C			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCHS1	8642	broad.mit.edu	37	11	6650685	6650685	+	Missense_Mutation	SNP	G	A	A			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCP1B	196513	broad.mit.edu	37	12	2062350	2062350	+	Missense_Mutation	SNP	C	G	G			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCUN1D2	55208	broad.mit.edu	37	13	114138409	114138409	+	Intron	SNP	C	A	A			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DDB1	1642	broad.mit.edu	37	11	61084039	61084039	+	Missense_Mutation	SNP	C	A	A			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DDX27	55661	broad.mit.edu	37	20	47858718	47858718	+	Silent	SNP	C	A	A			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DDX41	51428	broad.mit.edu	37	5	176941689	176941689	+	Intron	SNP	C	A	A			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DDX59	83479	broad.mit.edu	37	1	200635159	200635159	+	Missense_Mutation	SNP	C	T	T			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DENND5A	23258	broad.mit.edu	37	11	9229218	9229218	+	Intron	SNP	C	A	A			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DENND5B	160518	broad.mit.edu	37	12	31605417	31605417	+	Intron	SNP	G	A	A			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DIDO1	11083	broad.mit.edu	37	20	61542112	61542112	+	Intron	SNP	C	A	A			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH7	56171	broad.mit.edu	37	2	196718111	196718111	+	Nonsense_Mutation	SNP	C	A	A			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH8	1769	broad.mit.edu	37	6	38818065	38818065	+	Silent	SNP	A	T	T			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH8	1769	broad.mit.edu	37	6	38994242	38994242	+	Intron	SNP	G	T	T			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH9	1770	broad.mit.edu	37	17	11513658	11513658	+	Intron	SNP	C	T	T			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAJC14	85406	broad.mit.edu	37	12	56221779	56221779	+	Missense_Mutation	SNP	G	A	A			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNMT3A	1788	broad.mit.edu	37	2	25463080	25463080	+	Intron	SNP	C	A	A			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNPEP	23549	broad.mit.edu	37	2	220246787	220246787	+	Silent	SNP	G	A	A			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DOCK2	1794	broad.mit.edu	37	5	169126941	169126941	+	Intron	DEL	G	-	-			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DSG4	147409	broad.mit.edu	37	18	28980905	28980905	+	Missense_Mutation	SNP	C	G	G			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DTNB	1838	broad.mit.edu	37	2	25799721	25799721	+	Nonsense_Mutation	SNP	C	A	A			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DUSP22	56940	broad.mit.edu	37	6	292496	292496	+	5'UTR	SNP	C	T	T			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DUSP27	92235	broad.mit.edu	37	1	167095997	167095997	+	Silent	SNP	C	A	A			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EBF3	253738	broad.mit.edu	37	10	131640445	131640445	+	Missense_Mutation	SNP	C	G	G			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EBNA1BP2	10969	broad.mit.edu	37	1	43632904	43632904	+	Silent	SNP	C	A	A			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EEF1B2	1933	broad.mit.edu	37	2	207026077	207026077	+	Nonsense_Mutation	SNP	G	T	T			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EEF1B2	1933	broad.mit.edu	37	2	207026150	207026150	+	Missense_Mutation	SNP	G	C	C			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EFCAB7	84455	broad.mit.edu	37	1	63998406	63998406	+	Missense_Mutation	SNP	T	A	A			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EFS	10278	broad.mit.edu	37	14	23829551	23829551	+	Intron	SNP	C	A	A			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EGFLAM	133584	broad.mit.edu	37	5	38425138	38425138	+	Missense_Mutation	SNP	C	A	A			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EIF4ENIF1	56478	broad.mit.edu	37	22	31836124	31836124	+	Intron	SNP	G	A	A			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ELOVL4	6785	broad.mit.edu	37	6	80626254	80626254	+	3'UTR	SNP	G	T	T			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ENAH	55740	broad.mit.edu	37	1	225685404	225685404	+	3'UTR	SNP	T	A	A			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPHA3	2042	broad.mit.edu	37	3	89457078	89457078	+	Intron	SNP	A	T	T			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPHA5	2044	broad.mit.edu	37	4	66230911	66230911	+	Missense_Mutation	SNP	C	T	T			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPHB6	2051	broad.mit.edu	37	7	142564758	142564758	+	Missense_Mutation	SNP	G	T	T			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPYC	1833	broad.mit.edu	37	12	91372012	91372013	+	Missense_Mutation	DNP	CT	AA	AA			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ERBB4	2066	broad.mit.edu	37	2	212590042	212590042	+	Intron	SNP	G	C	C			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EXOC2	55770	broad.mit.edu	37	6	598815	598815	+	Intron	SNP	T	C	C			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EYS	346007	broad.mit.edu	37	6	66044829	66044829	+	Intron	SNP	C	A	A			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
F5	2153	broad.mit.edu	37	1	169511383	169511383	+	Nonsense_Mutation	SNP	C	T	T			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAF1	11124	broad.mit.edu	37	1	51121144	51121144	+	Missense_Mutation	SNP	C	A	A			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM102B	284611	broad.mit.edu	37	1	109158962	109158962	+	Intron	SNP	T	C	C			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM134B	54463	broad.mit.edu	37	5	16572034	16572034	+	Intron	SNP	C	A	A			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM135A	57579	broad.mit.edu	37	6	71233697	71233697	+	Silent	SNP	C	A	A			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM135B	51059	broad.mit.edu	37	8	139151231	139151231	+	Missense_Mutation	SNP	G	C	C			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM135B	51059	broad.mit.edu	37	8	139180333	139180333	+	Intron	SNP	A	T	T			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM13A	10144	broad.mit.edu	37	4	89653369	89653369	+	Intron	SNP	C	A	A			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM178A	55719	broad.mit.edu	37	10	102683760	102683760	+	Silent	SNP	A	G	G			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM47A	158724	broad.mit.edu	37	X	34148334	34148334	+	Missense_Mutation	SNP	C	A	A			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM9B	171483	broad.mit.edu	37	X	9000951	9000951	+	Intron	SNP	G	T	T			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FASLG	356	broad.mit.edu	37	1	172633533	172633533	+	Intron	SNP	C	A	A			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAT4	79633	broad.mit.edu	37	4	126369691	126369691	+	Missense_Mutation	SNP	G	T	T			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FCAR	2204	broad.mit.edu	37	19	55385779	55385779	+	Missense_Mutation	SNP	G	A	A			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FCRL3	115352	broad.mit.edu	37	1	157665024	157665024	+	Intron	SNP	G	T	T			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FERMT1	55612	broad.mit.edu	37	20	6093086	6093086	+	Intron	SNP	G	T	T			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FHOD1	29109	broad.mit.edu	37	16	67265143	67265143	+	Missense_Mutation	SNP	G	C	C			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FH	2271	broad.mit.edu	37	1	241661365	241661365	+	Intron	SNP	T	A	A			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FILIP1	27145	broad.mit.edu	37	6	76072432	76072432	+	Intron	SNP	A	T	T			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLG2	388698	broad.mit.edu	37	1	152328814	152328814	+	Missense_Mutation	SNP	C	A	A			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLG	2312	broad.mit.edu	37	1	152283027	152283027	+	Silent	SNP	C	T	T			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FMO2	2327	broad.mit.edu	37	1	171154954	171154954	+	Silent	SNP	T	G	G			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FNDC1	84624	broad.mit.edu	37	6	159677743	159677743	+	Intron	SNP	G	C	C			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FRAS1	80144	broad.mit.edu	37	4	79461787	79461787	+	Missense_Mutation	SNP	C	A	A			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FRMPD4	9758	broad.mit.edu	37	X	12720227	12720227	+	Intron	SNP	G	T	T			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FRS3	10817	broad.mit.edu	37	6	41740639	41740639	+	Silent	SNP	C	A	A			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FSCN1	6624	broad.mit.edu	37	7	5643057	5643057	+	Intron	SNP	C	T	T			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FSTL5	56884	broad.mit.edu	37	4	162459300	162459300	+	Intron	SNP	G	T	T			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FTHL17	53940	broad.mit.edu	37	X	31089982	31089982	+	Missense_Mutation	SNP	T	A	A			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FTMT	94033	broad.mit.edu	37	5	121187965	121187965	+	Silent	SNP	C	A	A			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FTSJ3	117246	broad.mit.edu	37	17	61897566	61897566	+	Intron	SNP	C	A	A			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FUNDC2P2	388965	broad.mit.edu	37	2	84518100	84518100	+	Missense_Mutation	SNP	G	A	A			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABRA3	2556	broad.mit.edu	37	X	151336800	151336800	+	Missense_Mutation	SNP	C	A	A			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GALNT8	26290	broad.mit.edu	37	12	4835766	4835766	+	Missense_Mutation	SNP	G	A	A			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GALNT8	26290	broad.mit.edu	37	12	4848400	4848400	+	Missense_Mutation	SNP	T	A	A			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GALNTL6	442117	broad.mit.edu	37	4	172735814	172735814	+	Nonsense_Mutation	SNP	G	A	A			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GGNBP2	79893	broad.mit.edu	37	17	34937774	34937774	+	Missense_Mutation	SNP	A	T	T			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GHR	2690	broad.mit.edu	37	5	42713675	42713675	+	Intron	SNP	T	C	C			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GIMAP7	168537	broad.mit.edu	37	7	150217081	150217081	+	Missense_Mutation	SNP	C	A	A			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLIPR2	152007	broad.mit.edu	37	9	36147684	36147684	+	Intron	SNP	G	T	T			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GOSR1	9527	broad.mit.edu	37	17	28811835	28811835	+	Intron	DEL	T	-	-	rs75515486		TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPNMB	10457	broad.mit.edu	37	7	23296802	23296802	+	Intron	SNP	T	A	A			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR112	139378	broad.mit.edu	37	X	135430312	135430312	+	Missense_Mutation	SNP	G	T	T			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR125	166647	broad.mit.edu	37	4	22425944	22425944	+	Missense_Mutation	SNP	T	C	C			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPRASP1	9737	broad.mit.edu	37	X	101910104	101910104	+	Silent	SNP	C	A	A			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPRASP1	9737	broad.mit.edu	37	X	101911166	101911166	+	Missense_Mutation	SNP	G	T	T			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPRC6A	222545	broad.mit.edu	37	6	117127972	117127972	+	Missense_Mutation	SNP	C	G	G			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GREB1	9687	broad.mit.edu	37	2	11718443	11718443	+	Missense_Mutation	SNP	C	A	A			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GREB1	9687	broad.mit.edu	37	2	11755257	11755257	+	Missense_Mutation	SNP	T	A	A			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GREB1	9687	broad.mit.edu	37	2	11767047	11767047	+	Intron	SNP	T	G	G			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRIP2	80852	broad.mit.edu	37	3	14558745	14558745	+	Intron	SNP	C	A	A	rs113464747	by1000genomes	TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
H2BFWT	158983	broad.mit.edu	37	X	103267690	103267690	+	Intron	SNP	G	T	T			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HDAC9	9734	broad.mit.edu	37	7	18631328	18631328	+	Intron	SNP	G	T	T			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HDC	3067	broad.mit.edu	37	15	50534354	50534354	+	3'UTR	SNP	G	A	A			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HDX	139324	broad.mit.edu	37	X	83730391	83730391	+	Silent	SNP	A	T	T			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HEATR1	55127	broad.mit.edu	37	1	236730018	236730018	+	Silent	SNP	G	A	A			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HECW1	23072	broad.mit.edu	37	7	43508600	43508600	+	Missense_Mutation	SNP	C	A	A			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HEPHL1	341208	broad.mit.edu	37	11	93779135	93779135	+	Intron	SNP	G	T	T			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HERC2	8924	broad.mit.edu	37	15	28375288	28375288	+	Intron	SNP	C	A	A			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HGD	3081	broad.mit.edu	37	3	120369567	120369567	+	Intron	SNP	G	C	C			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HIST2H3D	653604	broad.mit.edu	37	1	149785214	149785214	+	Missense_Mutation	SNP	G	A	A			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HLA-DQA2	3118	broad.mit.edu	37	6	32712989	32712989	+	Missense_Mutation	SNP	G	A	A			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HLA-G	3135	broad.mit.edu	37	6	29798227	29798227	+	Intron	SNP	C	G	G			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HMCN1	83872	broad.mit.edu	37	1	186122916	186122916	+	Missense_Mutation	SNP	G	A	A			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HMGCR	3156	broad.mit.edu	37	5	74655898	74655898	+	Missense_Mutation	SNP	G	T	T			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HOXA1	3198	broad.mit.edu	37	7	27134270	27134270	+	Missense_Mutation	SNP	A	T	T	rs41311763		TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HOXA9	3205	broad.mit.edu	37	7	27204508	27204508	+	Missense_Mutation	SNP	G	C	C			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HS3ST5	222537	broad.mit.edu	37	6	114405681	114405681	+	Intron	SNP	C	T	T			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HSF4	3299	broad.mit.edu	37	16	67199351	67199351	+	Intron	SNP	G	A	A			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IDH3G	3421	broad.mit.edu	37	X	153053616	153053616	+	Intron	SNP	G	C	C			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IFNAR2	3455	broad.mit.edu	37	21	34635338	34635338	+	Frame_Shift_Del	DEL	G	-	-			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IGHMBP2	3508	broad.mit.edu	37	11	68682307	68682307	+	Missense_Mutation	SNP	C	T	T			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IK	3550	broad.mit.edu	37	5	140028040	140028040	+	Intron	SNP	C	T	T			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IK	3550	broad.mit.edu	37	5	140028053	140028053	+	Intron	SNP	C	T	T			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL1RAPL2	26280	broad.mit.edu	37	X	104440287	104440287	+	Silent	SNP	G	T	T			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL27RA	9466	broad.mit.edu	37	19	14157462	14157462	+	Intron	SNP	C	A	A			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
INADL	10207	broad.mit.edu	37	1	62614075	62614075	+	Intron	SNP	G	T	T			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGA10	8515	broad.mit.edu	37	1	145536120	145536120	+	Nonsense_Mutation	SNP	C	T	T			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGAM	3684	broad.mit.edu	37	16	31283276	31283276	+	Missense_Mutation	SNP	G	T	T			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
JAK3	3718	broad.mit.edu	37	19	17942109	17942109	+	Missense_Mutation	SNP	C	A	A			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
JPH2	57158	broad.mit.edu	37	20	42806414	42806414	+	Intron	SNP	C	A	A			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNJ12	3768	broad.mit.edu	37	17	21319630	21319630	+	Missense_Mutation	SNP	C	A	A			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KDM5B	10765	broad.mit.edu	37	1	202743891	202743891	+	Intron	SNP	C	G	G			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KEL	3792	broad.mit.edu	37	7	142640343	142640343	+	Intron	SNP	C	A	A			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA0090	23065	broad.mit.edu	37	1	19571335	19571335	+	Intron	SNP	G	A	A			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA0319	9856	broad.mit.edu	37	6	24564366	24564366	+	Intron	SNP	G	A	A			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA0802	23255	broad.mit.edu	37	18	8825177	8825177	+	Silent	SNP	G	T	T	rs149764588		TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA0947	23379	broad.mit.edu	37	5	5462198	5462198	+	Silent	SNP	G	A	A			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1324L	222223	broad.mit.edu	37	7	86526823	86526823	+	Missense_Mutation	SNP	T	G	G			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA2018	205717	broad.mit.edu	37	3	113378249	113378249	+	Silent	SNP	A	T	T			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF19	124602	broad.mit.edu	37	17	72338032	72338032	+	Missense_Mutation	SNP	C	A	A			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF21B	23046	broad.mit.edu	37	1	200969614	200969614	+	Missense_Mutation	SNP	G	A	A			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF27	55582	broad.mit.edu	37	9	86474030	86474030	+	Intron	SNP	C	G	G			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF2C	11004	broad.mit.edu	37	1	45213045	45213045	+	Intron	SNP	G	T	T			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIR2DL3	3804	broad.mit.edu	37	19	55271926	55271926	+	Intron	SNP	C	A	A			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIR2DL3	3804	broad.mit.edu	37	19	55272202	55272202	+	Intron	SNP	A	T	T			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIR3DL1	3811	broad.mit.edu	37	19	55344303	55344303	+	Intron	SNP	G	T	T			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLF17	128209	broad.mit.edu	37	1	44584645	44584645	+	Silent	SNP	G	T	T			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRAS	3845	broad.mit.edu	37	12	25398285	25398285	+	Missense_Mutation	SNP	C	A	A	rs121913530		TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRBA1	84626	broad.mit.edu	37	7	149425649	149425649	+	Missense_Mutation	SNP	G	A	A			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRT40	125115	broad.mit.edu	37	17	39138576	39138576	+	Nonsense_Mutation	SNP	T	A	A			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRTAP10-11	386678	broad.mit.edu	37	21	46067175	46067175	+	Missense_Mutation	SNP	G	T	T			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
L1CAM	3897	broad.mit.edu	37	X	153135357	153135357	+	Missense_Mutation	SNP	G	T	T			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LANCL1	10314	broad.mit.edu	37	2	211306026	211306026	+	Intron	SNP	T	A	A			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LCTL	197021	broad.mit.edu	37	15	66857164	66857164	+	Silent	SNP	G	T	T			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LDLRAD3	143458	broad.mit.edu	37	11	36057670	36057670	+	Missense_Mutation	SNP	G	C	C	rs144816501		TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LILRA2	11027	broad.mit.edu	37	19	55087673	55087673	+	Intron	SNP	G	T	T			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LILRA2	11027	broad.mit.edu	37	19	55098623	55098623	+	Intron	SNP	G	T	T			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC389458	389458	broad.mit.edu	37	7	5073802	5073802	+	Intron	SNP	G	T	T			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC642587	642587	broad.mit.edu	37	1	209603910	209603910	+	Intron	SNP	C	A	A			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC728554	728554	broad.mit.edu	37	5	177305548	177305548	+	Intron	SNP	G	T	T			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC96610	96610	broad.mit.edu	37	22	23135393	23135393	+	RNA	DEL	C	-	-			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOX	4015	broad.mit.edu	37	5	121409740	121409740	+	Missense_Mutation	SNP	G	T	T			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LPHN3	23284	broad.mit.edu	37	4	62845511	62845511	+	Intron	SNP	C	T	T			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC36	55282	broad.mit.edu	37	16	67401002	67401002	+	Missense_Mutation	SNP	G	T	T			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC37A4	55073	broad.mit.edu	37	17	43580714	43580714	+	Intron	SNP	G	T	T			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC66	339977	broad.mit.edu	37	4	52862092	52862092	+	Missense_Mutation	SNP	C	A	A			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRN3	54674	broad.mit.edu	37	7	110763529	110763529	+	Missense_Mutation	SNP	G	C	C			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LUZP2	338645	broad.mit.edu	37	11	25098875	25098875	+	Missense_Mutation	SNP	G	A	A			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LYAR	55646	broad.mit.edu	37	4	4276496	4276496	+	Nonsense_Mutation	SNP	C	A	A			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAF	4094	broad.mit.edu	37	16	79633711	79633711	+	Missense_Mutation	SNP	A	T	T			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MALAT1	378938	broad.mit.edu	37	11	65272642	65272642	+	RNA	SNP	T	C	C			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAN2A1	4124	broad.mit.edu	37	5	109110522	109110522	+	Missense_Mutation	SNP	G	T	T			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAN2B2	23324	broad.mit.edu	37	4	6599959	6599959	+	Missense_Mutation	SNP	C	A	A			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAP1D	254042	broad.mit.edu	37	2	172945144	172945144	+	3'UTR	SNP	C	A	A			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAP2K3	5606	broad.mit.edu	37	17	21215389	21215389	+	Intron	SNP	G	A	A			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAP2K3	5606	broad.mit.edu	37	17	21215469	21215469	+	Missense_Mutation	SNP	C	A	A	rs71371053		TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAP3K5	4217	broad.mit.edu	37	6	137018358	137018358	+	Missense_Mutation	SNP	T	A	A			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MARCH1	55016	broad.mit.edu	37	4	165111267	165111267	+	Intron	SNP	G	T	T			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MARCH8	220972	broad.mit.edu	37	10	45953764	45953764	+	Nonsense_Mutation	SNP	C	A	A			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MBTPS2	51360	broad.mit.edu	37	X	21886563	21886563	+	Intron	SNP	G	C	C			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MCOLN3	55283	broad.mit.edu	37	1	85498261	85498261	+	Intron	SNP	A	G	G			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MDM2	4193	broad.mit.edu	37	12	69230318	69230318	+	Intron	SNP	T	C	C			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MECR	51102	broad.mit.edu	37	1	29533255	29533255	+	Intron	SNP	C	A	A			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MED13	9969	broad.mit.edu	37	17	60107282	60107283	+	Frame_Shift_Del	DEL	GT	-	-			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MEFV	4210	broad.mit.edu	37	16	3299593	3299593	+	Missense_Mutation	SNP	G	T	T			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MFI2	4241	broad.mit.edu	37	3	196749841	196749841	+	Missense_Mutation	SNP	T	A	A			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MGAM	8972	broad.mit.edu	37	7	141752752	141752752	+	Missense_Mutation	SNP	A	T	T			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MIER1	57708	broad.mit.edu	37	1	67391953	67391953	+	Intron	SNP	G	A	A			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MLL3	58508	broad.mit.edu	37	7	152008931	152008931	+	Missense_Mutation	SNP	C	G	G			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MMP19	4327	broad.mit.edu	37	12	56231471	56231471	+	Intron	SNP	G	C	C			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MMP26	56547	broad.mit.edu	37	11	5011842	5011842	+	Missense_Mutation	SNP	C	A	A			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MORC1	27136	broad.mit.edu	37	3	108698378	108698378	+	Missense_Mutation	SNP	G	T	T			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MORC1	27136	broad.mit.edu	37	3	108819311	108819311	+	Silent	SNP	C	A	A			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MPHOSPH9	10198	broad.mit.edu	37	12	123651078	123651078	+	Intron	SNP	G	A	A			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MRPL45	84311	broad.mit.edu	37	17	36455435	36455435	+	Splice_Site	SNP	G	T	T			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTM1	4534	broad.mit.edu	37	X	149807597	149807597	+	Intron	SNP	C	A	A			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC16	94025	broad.mit.edu	37	19	9066578	9066578	+	Silent	SNP	G	C	C			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC17	140453	broad.mit.edu	37	7	100680748	100680748	+	Silent	SNP	C	T	T			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MXRA5	25878	broad.mit.edu	37	X	3235811	3235811	+	Nonsense_Mutation	SNP	C	A	A			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH1	4619	broad.mit.edu	37	17	10419891	10419891	+	Missense_Mutation	SNP	C	A	A			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH8	4626	broad.mit.edu	37	17	10315587	10315587	+	Intron	SNP	C	A	A			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH9	4627	broad.mit.edu	37	22	36684363	36684364	+	Nonsense_Mutation	DNP	CC	AA	AA			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO1H	283446	broad.mit.edu	37	12	109877531	109877531	+	5'UTR	SNP	G	A	A			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO5B	4645	broad.mit.edu	37	18	47421485	47421485	+	Missense_Mutation	SNP	C	G	G			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYPN	84665	broad.mit.edu	37	10	69954182	69954182	+	Silent	SNP	A	T	T			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NAIF1	203245	broad.mit.edu	37	9	130829231	130829231	+	Silent	SNP	G	A	A			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NAPA	8775	broad.mit.edu	37	19	48004056	48004056	+	Intron	SNP	T	C	C			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NAV1	89796	broad.mit.edu	37	1	201754309	201754309	+	Intron	SNP	A	T	T			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NAV3	89795	broad.mit.edu	37	12	78225279	78225279	+	Missense_Mutation	SNP	C	A	A			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NAV3	89795	broad.mit.edu	37	12	78444684	78444684	+	Missense_Mutation	SNP	C	A	A			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBPF10	100132406	broad.mit.edu	37	1	145440555	145440555	+	Intron	SNP	G	A	A			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBPF3	84224	broad.mit.edu	37	1	21808027	21808027	+	Intron	SNP	T	C	C			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCKAP1L	3071	broad.mit.edu	37	12	54922001	54922001	+	Intron	SNP	T	A	A			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NDST4	64579	broad.mit.edu	37	4	115773826	115773826	+	Intron	SNP	T	A	A			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NEFH	4744	broad.mit.edu	37	22	29885226	29885226	+	Missense_Mutation	SNP	C	G	G			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NEK4	6787	broad.mit.edu	37	3	52777561	52777561	+	Intron	SNP	C	A	A			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NETO1	81832	broad.mit.edu	37	18	70417390	70417390	+	Nonsense_Mutation	SNP	G	T	T	rs139202022	by1000genomes	TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NETO1	81832	broad.mit.edu	37	18	70531928	70531928	+	Intron	SNP	C	A	A	rs148966704	by1000genomes	TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NFASC	23114	broad.mit.edu	37	1	204956704	204956704	+	Intron	SNP	G	T	T			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLRC5	84166	broad.mit.edu	37	16	57047554	57047554	+	Intron	SNP	T	C	C			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLRP13	126204	broad.mit.edu	37	19	56443652	56443652	+	Missense_Mutation	SNP	G	T	T			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NPHS1	4868	broad.mit.edu	37	19	36342118	36342118	+	Intron	SNP	G	T	T			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NPR3	4883	broad.mit.edu	37	5	32775108	32775108	+	Intron	SNP	G	T	T			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NPSR1	387129	broad.mit.edu	37	7	34790029	34790029	+	Intron	SNP	G	T	T			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NR1I2	8856	broad.mit.edu	37	3	119526029	119526029	+	Intron	SNP	A	T	T			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRG1	3084	broad.mit.edu	37	8	32463156	32463156	+	Missense_Mutation	SNP	G	A	A			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NSUN3	63899	broad.mit.edu	37	3	93813893	93813893	+	Missense_Mutation	SNP	C	T	T			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NT5C1A	84618	broad.mit.edu	37	1	40137520	40137520	+	Intron	SNP	C	A	A			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NUMA1	4926	broad.mit.edu	37	11	71740271	71740271	+	Missense_Mutation	SNP	G	T	T			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NUP62	23636	broad.mit.edu	37	19	50413058	50413058	+	Missense_Mutation	SNP	C	A	A			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OBFC1	79991	broad.mit.edu	37	10	105648807	105648807	+	Intron	SNP	C	A	A			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OCA2	4948	broad.mit.edu	37	15	28326847	28326847	+	Missense_Mutation	SNP	C	A	A			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OCM	654231	broad.mit.edu	37	7	5920599	5920599	+	Intron	SNP	C	G	G			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ODZ3	55714	broad.mit.edu	37	4	183652148	183652149	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR14A16	284532	broad.mit.edu	37	1	247978621	247978621	+	Missense_Mutation	SNP	G	T	T			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2AE1	81392	broad.mit.edu	37	7	99474394	99474394	+	Missense_Mutation	SNP	C	A	A			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2AG1	144125	broad.mit.edu	37	11	6806622	6806622	+	Missense_Mutation	SNP	G	T	T			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2F2	135948	broad.mit.edu	37	7	143632883	143632883	+	Missense_Mutation	SNP	G	T	T			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2F2	135948	broad.mit.edu	37	7	143633190	143633190	+	Missense_Mutation	SNP	A	C	C			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2G6	391211	broad.mit.edu	37	1	248684907	248684907	+	5'Flank	SNP	C	G	G			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2J2	26707	broad.mit.edu	37	6	29141761	29141761	+	Missense_Mutation	SNP	G	T	T			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2M4	26245	broad.mit.edu	37	1	248402509	248402509	+	Silent	SNP	T	C	C			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2T33	391195	broad.mit.edu	37	1	248437125	248437125	+	5'Flank	SNP	C	A	A			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4A5	81318	broad.mit.edu	37	11	51412225	51412225	+	Missense_Mutation	SNP	C	T	T			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4N3P	390539	broad.mit.edu	37	15	22413843	22413843	+	Silent	SNP	C	T	T			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4P4	81300	broad.mit.edu	37	11	55406405	55406406	+	Missense_Mutation	DNP	AC	CA	CA			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR51B5	282763	broad.mit.edu	37	11	5364598	5364598	+	Missense_Mutation	SNP	G	T	T			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR52E6	390078	broad.mit.edu	37	11	5862540	5862540	+	Silent	SNP	G	T	T			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR5B17	219965	broad.mit.edu	37	11	58125859	58125859	+	Silent	SNP	T	A	A			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR5K1	26339	broad.mit.edu	37	3	98188926	98188926	+	Missense_Mutation	SNP	G	T	T			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR5L2	26338	broad.mit.edu	37	11	55594859	55594859	+	Silent	SNP	C	A	A			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OSGEP	55644	broad.mit.edu	37	14	20916968	20916968	+	Missense_Mutation	SNP	C	A	A			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OSTN	344901	broad.mit.edu	37	3	190967879	190967879	+	Missense_Mutation	SNP	G	C	C			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OTOF	9381	broad.mit.edu	37	2	26684914	26684914	+	Intron	SNP	C	A	A			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OTUD7A	161725	broad.mit.edu	37	15	32060398	32060398	+	Intron	SNP	T	C	C			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
P2RX3	5024	broad.mit.edu	37	11	57114033	57114033	+	Silent	SNP	C	T	T			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAK1	5058	broad.mit.edu	37	11	77051741	77051741	+	Missense_Mutation	SNP	C	A	A			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PALM2-AKAP2	445815	broad.mit.edu	37	9	112900428	112900428	+	Missense_Mutation	SNP	G	T	T			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAPPA2	60676	broad.mit.edu	37	1	176525866	176525866	+	Silent	SNP	G	A	A			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAPPA2	60676	broad.mit.edu	37	1	176809426	176809426	+	Intron	SNP	G	T	T			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAPPA	5069	broad.mit.edu	37	9	119094809	119094809	+	Intron	SNP	C	G	G			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCBP3	54039	broad.mit.edu	37	21	47359949	47359949	+	Silent	SNP	A	T	T			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH10	57575	broad.mit.edu	37	4	134072013	134072013	+	Missense_Mutation	SNP	G	C	C			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH11X	27328	broad.mit.edu	37	X	91237719	91237719	+	Intron	SNP	G	C	C			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHA7	56141	broad.mit.edu	37	5	140215057	140215057	+	Silent	SNP	C	A	A			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHB14	56122	broad.mit.edu	37	5	140604624	140604625	+	Missense_Mutation	DNP	TC	AA	AA			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHGA1	56114	broad.mit.edu	37	5	140711999	140711999	+	Missense_Mutation	SNP	A	T	T			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHGA8	9708	broad.mit.edu	37	5	140774290	140774290	+	Missense_Mutation	SNP	C	A	A			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHGA8	9708	broad.mit.edu	37	5	140774680	140774680	+	Missense_Mutation	SNP	A	C	C			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE6C	5146	broad.mit.edu	37	10	95380394	95380394	+	Silent	SNP	C	T	T			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE7B	27115	broad.mit.edu	37	6	136268713	136268713	+	Intron	SNP	A	G	G			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDZRN3	23024	broad.mit.edu	37	3	73651529	73651529	+	Silent	SNP	C	A	A			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDZRN4	29951	broad.mit.edu	37	12	41966757	41966757	+	Nonsense_Mutation	SNP	G	T	T			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PEAR1	375033	broad.mit.edu	37	1	156878710	156878710	+	Silent	SNP	C	G	G			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PEX26	55670	broad.mit.edu	37	22	18562679	18562679	+	Silent	SNP	C	A	A			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PHACTR4	65979	broad.mit.edu	37	1	28800397	28800397	+	Silent	SNP	C	A	A			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PHF8	23133	broad.mit.edu	37	X	54019925	54019925	+	Intron	SNP	A	G	G			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIAS3	10401	broad.mit.edu	37	1	145580301	145580301	+	Silent	SNP	T	C	C			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIGM	93183	broad.mit.edu	37	1	160001510	160001510	+	Missense_Mutation	SNP	C	A	A			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIP4K2A	5305	broad.mit.edu	37	10	22880511	22880511	+	Intron	SNP	G	T	T			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIWIL1	9271	broad.mit.edu	37	12	130830955	130830955	+	Missense_Mutation	SNP	C	A	A			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PKHD1	5314	broad.mit.edu	37	6	51920529	51920529	+	Splice_Site	SNP	T	C	C			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLCB1	23236	broad.mit.edu	37	20	8717720	8717720	+	Missense_Mutation	SNP	G	T	T			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLG	5340	broad.mit.edu	37	6	161139674	161139674	+	Intron	SNP	C	T	T			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLS3	5358	broad.mit.edu	37	X	114874645	114874645	+	Intron	SNP	C	A	A			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLXNB3	5365	broad.mit.edu	37	X	153033677	153033677	+	Intron	SNP	G	C	C			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PMS1	5378	broad.mit.edu	37	2	190660540	190660540	+	Missense_Mutation	SNP	G	T	T			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POM121L12	285877	broad.mit.edu	37	7	53104090	53104090	+	Silent	SNP	C	A	A			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POU6F2	11281	broad.mit.edu	37	7	39500186	39500186	+	Silent	SNP	G	C	C			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPAPDC1B	84513	broad.mit.edu	37	8	38125374	38125374	+	Intron	SNP	G	A	A			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPIE	10450	broad.mit.edu	37	1	40206971	40206971	+	Intron	SNP	G	T	T			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPL	5493	broad.mit.edu	37	16	4934298	4934298	+	Missense_Mutation	SNP	G	T	T			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPM1L	151742	broad.mit.edu	37	3	160786690	160786690	+	Silent	SNP	C	T	T			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPP1R15B	84919	broad.mit.edu	37	1	204379882	204379882	+	Missense_Mutation	SNP	A	T	T			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRAMEF1	65121	broad.mit.edu	37	1	12853778	12853778	+	Intron	SNP	A	T	T			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRDM9	56979	broad.mit.edu	37	5	23522490	23522490	+	Missense_Mutation	SNP	G	A	A			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRKCA	5578	broad.mit.edu	37	17	64795522	64795522	+	Intron	SNP	T	C	C			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRPF4	9128	broad.mit.edu	37	9	116041389	116041389	+	Missense_Mutation	SNP	G	T	T			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRPS2	5634	broad.mit.edu	37	X	12828215	12828215	+	Silent	SNP	C	A	A			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRR11	55771	broad.mit.edu	37	17	57257221	57257221	+	Intron	SNP	G	C	C			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSD3	23362	broad.mit.edu	37	8	18393390	18393390	+	Missense_Mutation	SNP	C	A	A			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSME4	23198	broad.mit.edu	37	2	54122797	54122797	+	Silent	SNP	A	T	T			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSTK	118672	broad.mit.edu	37	10	124740146	124740146	+	Missense_Mutation	SNP	G	A	A			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTCHD2	57540	broad.mit.edu	37	1	11561297	11561297	+	Missense_Mutation	SNP	G	T	T			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTGS2	5743	broad.mit.edu	37	1	186645168	186645168	+	Missense_Mutation	SNP	C	G	G			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTP4A2	8073	broad.mit.edu	37	1	32375638	32375638	+	Splice_Site	SNP	C	A	A			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPN14	5784	broad.mit.edu	37	1	214705803	214705803	+	Intron	SNP	C	A	A			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRU	10076	broad.mit.edu	37	1	29606079	29606079	+	Missense_Mutation	SNP	C	T	T			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRZ1	5803	broad.mit.edu	37	7	121616195	121616195	+	Intron	SNP	G	T	T			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRZ1	5803	broad.mit.edu	37	7	121652388	121652388	+	Missense_Mutation	SNP	G	T	T			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRZ1	5803	broad.mit.edu	37	7	121699092	121699092	+	Intron	SNP	C	T	T			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PXDN	7837	broad.mit.edu	37	2	1642593	1642593	+	Intron	SNP	G	A	A			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RABGGTA	5875	broad.mit.edu	37	14	24735687	24735687	+	Missense_Mutation	SNP	C	A	A			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RALGAPB	57148	broad.mit.edu	37	20	37177415	37177415	+	Nonsense_Mutation	SNP	A	T	T			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RALGAPB	57148	broad.mit.edu	37	20	37177493	37177493	+	Intron	SNP	G	C	C			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RASGRF2	5924	broad.mit.edu	37	5	80409612	80409612	+	Silent	SNP	T	C	C			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RBM18	92400	broad.mit.edu	37	9	125014320	125014320	+	Intron	SNP	G	T	T			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RBM27	54439	broad.mit.edu	37	5	145665588	145665588	+	Missense_Mutation	SNP	A	G	G			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RC3H1	149041	broad.mit.edu	37	1	173930234	173930234	+	Missense_Mutation	SNP	G	A	A			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RC3H2	54542	broad.mit.edu	37	9	125620515	125620515	+	Intron	SNP	C	A	A			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
REEP4	80346	broad.mit.edu	37	8	21996976	21996976	+	Silent	SNP	G	T	T			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
REG1A	5967	broad.mit.edu	37	2	79349965	79349965	+	Splice_Site	SNP	A	G	G			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
REG3G	130120	broad.mit.edu	37	2	79254112	79254112	+	Intron	SNP	C	A	A			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RELB	5971	broad.mit.edu	37	19	45541024	45541024	+	Silent	SNP	A	G	G			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RFTN2	130132	broad.mit.edu	37	2	198436886	198436886	+	Missense_Mutation	SNP	C	G	G	rs115896530	by1000genomes	TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RFX6	222546	broad.mit.edu	37	6	117245822	117245822	+	Intron	SNP	C	T	T			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RGAG4	340526	broad.mit.edu	37	X	71349932	71349932	+	Missense_Mutation	SNP	C	A	A			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RMND5B	64777	broad.mit.edu	37	5	177574710	177574710	+	Intron	SNP	C	A	A			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNF5P1	286140	broad.mit.edu	37	8	38458672	38458672	+	Missense_Mutation	SNP	C	T	T			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RP1L1	94137	broad.mit.edu	37	8	10467307	10467307	+	Missense_Mutation	SNP	C	A	A			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPGRIP1	57096	broad.mit.edu	37	14	21762860	21762860	+	Missense_Mutation	SNP	C	T	T			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RUFY1	80230	broad.mit.edu	37	5	178989679	178989679	+	Intron	SNP	A	T	T			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RUNX1T1	862	broad.mit.edu	37	8	93003923	93003923	+	Missense_Mutation	SNP	C	A	A			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RXFP3	51289	broad.mit.edu	37	5	33936931	33936931	+	Missense_Mutation	SNP	C	T	T			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR2	6262	broad.mit.edu	37	1	237504964	237504964	+	Intron	SNP	G	T	T			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR2	6262	broad.mit.edu	37	1	237843805	237843805	+	Missense_Mutation	SNP	T	G	G			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR2	6262	broad.mit.edu	37	1	237881857	237881857	+	Intron	SNP	C	A	A			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR2	6262	broad.mit.edu	37	1	237886560	237886560	+	Missense_Mutation	SNP	C	A	A			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCN10A	6336	broad.mit.edu	37	3	38764848	38764848	+	Intron	SNP	G	A	A			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEL1L	6400	broad.mit.edu	37	14	81954033	81954033	+	Intron	SNP	T	C	C			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEMA4D	10507	broad.mit.edu	37	9	92002517	92002517	+	Missense_Mutation	SNP	C	T	T			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEMA5A	9037	broad.mit.edu	37	5	9063002	9063002	+	Missense_Mutation	SNP	G	T	T			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEMA5B	54437	broad.mit.edu	37	3	122642417	122642417	+	Intron	SNP	G	A	A			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEMA5B	54437	broad.mit.edu	37	3	122658190	122658190	+	Intron	SNP	G	T	T			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SERPINA7	6906	broad.mit.edu	37	X	105277791	105277791	+	Intron	SNP	C	A	A			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SERPINB10	5273	broad.mit.edu	37	18	61600170	61600170	+	Intron	SNP	G	T	T			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SETBP1	26040	broad.mit.edu	37	18	42532822	42532822	+	Missense_Mutation	SNP	C	G	G			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SETD2	29072	broad.mit.edu	37	3	47158152	47158152	+	Missense_Mutation	SNP	C	A	A			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SGCZ	137868	broad.mit.edu	37	8	13965763	13965763	+	Intron	SNP	T	C	C			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SGIP1	84251	broad.mit.edu	37	1	67105424	67105424	+	Intron	SNP	G	T	T			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SHC2	25759	broad.mit.edu	37	19	425039	425039	+	Intron	DEL	C	-	-			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SHC2	25759	broad.mit.edu	37	19	425152	425152	+	Missense_Mutation	SNP	C	A	A			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SHMT2	6472	broad.mit.edu	37	12	57627456	57627456	+	Intron	SNP	A	T	T			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SIK2	23235	broad.mit.edu	37	11	111573994	111573994	+	Missense_Mutation	SNP	C	G	G			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SIPA1	6494	broad.mit.edu	37	11	65417575	65417575	+	Intron	SNP	C	T	T			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SI	6476	broad.mit.edu	37	3	164725667	164725667	+	Intron	SNP	A	T	T			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SI	6476	broad.mit.edu	37	3	164777707	164777707	+	Missense_Mutation	SNP	C	G	G			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC12A9	56996	broad.mit.edu	37	7	100457848	100457848	+	Silent	SNP	G	A	A			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC13A5	284111	broad.mit.edu	37	17	6594199	6594199	+	Missense_Mutation	SNP	C	A	A			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC14A2	8170	broad.mit.edu	37	18	43262466	43262466	+	Missense_Mutation	SNP	G	T	T			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC18A2	6571	broad.mit.edu	37	10	119029956	119029956	+	Silent	SNP	T	A	A			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC22A14	9389	broad.mit.edu	37	3	38348989	38348990	+	Intron	DNP	GG	CT	CT			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC24A5	283652	broad.mit.edu	37	15	48414087	48414087	+	Nonsense_Mutation	SNP	C	A	A			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC25A41	284427	broad.mit.edu	37	19	6427222	6427222	+	Missense_Mutation	SNP	C	T	T			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC35F4	341880	broad.mit.edu	37	14	58048020	58048020	+	Missense_Mutation	SNP	G	T	T			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC38A7	55238	broad.mit.edu	37	16	58713828	58713828	+	Missense_Mutation	SNP	C	A	A			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC6A16	28968	broad.mit.edu	37	19	49813408	49813408	+	Missense_Mutation	SNP	C	A	A			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC7A6	9057	broad.mit.edu	37	16	68308953	68308953	+	Silent	SNP	G	T	T			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC8A1	6546	broad.mit.edu	37	2	40656903	40656903	+	Missense_Mutation	SNP	C	A	A			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC9A11	284525	broad.mit.edu	37	1	173517545	173517545	+	Missense_Mutation	SNP	T	C	C			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLCO1B1	10599	broad.mit.edu	37	12	21325692	21325692	+	Missense_Mutation	SNP	C	A	A			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLITRK3	22865	broad.mit.edu	37	3	164906357	164906357	+	Frame_Shift_Del	DEL	G	-	-	rs146211129		TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMYD3	64754	broad.mit.edu	37	1	246493833	246493833	+	Missense_Mutation	SNP	C	T	T			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SND1	27044	broad.mit.edu	37	7	127361382	127361382	+	Silent	SNP	G	T	T			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNRPB	6628	broad.mit.edu	37	20	2446399	2446399	+	Silent	SNP	C	A	A			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNTB2	6645	broad.mit.edu	37	16	69279517	69279517	+	Missense_Mutation	SNP	G	A	A			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SORCS1	114815	broad.mit.edu	37	10	108447984	108447984	+	Missense_Mutation	SNP	G	T	T	rs140516942	byFrequency;by1000genomes	TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SORCS2	57537	broad.mit.edu	37	4	7717039	7717039	+	Splice_Site	SNP	G	T	T			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SORCS3	22986	broad.mit.edu	37	10	106865208	106865208	+	Missense_Mutation	SNP	G	T	T			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SORT1	6272	broad.mit.edu	37	1	109888320	109888320	+	Intron	SNP	C	A	A			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPAG17	200162	broad.mit.edu	37	1	118566053	118566053	+	Missense_Mutation	SNP	G	T	T			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPAM1	6677	broad.mit.edu	37	7	123594320	123594320	+	Silent	SNP	C	T	T			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPATA18	132671	broad.mit.edu	37	4	52948665	52948665	+	Nonsense_Mutation	SNP	A	T	T			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPATA22	84690	broad.mit.edu	37	17	3352250	3352250	+	Missense_Mutation	SNP	G	A	A			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPATA7	55812	broad.mit.edu	37	14	88883275	88883275	+	Intron	SNP	G	T	T			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPEG	10290	broad.mit.edu	37	2	220354583	220354583	+	Missense_Mutation	SNP	G	C	C			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SSPO	23145	broad.mit.edu	37	7	149480665	149480665	+	Missense_Mutation	SNP	G	T	T			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SSPO	23145	broad.mit.edu	37	7	149481821	149481821	+	Intron	SNP	G	T	T			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SSX3	10214	broad.mit.edu	37	X	48209378	48209378	+	Intron	SNP	G	T	T			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SSX5	6758	broad.mit.edu	37	X	48053613	48053613	+	Missense_Mutation	SNP	C	A	A			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STAB2	55576	broad.mit.edu	37	12	104063304	104063304	+	Intron	SNP	C	T	T			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STIM1	6786	broad.mit.edu	37	11	4103359	4103359	+	Intron	SNP	G	A	A			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STK10	6793	broad.mit.edu	37	5	171583834	171583834	+	Intron	SNP	C	G	G			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STK35	140901	broad.mit.edu	37	20	2097599	2097599	+	Silent	SNP	C	A	A			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STS	412	broad.mit.edu	37	X	7175602	7175602	+	Missense_Mutation	SNP	G	T	T			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STX7	8417	broad.mit.edu	37	6	132793371	132793371	+	Intron	SNP	G	T	T			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STXBP5L	9515	broad.mit.edu	37	3	120959336	120959336	+	Missense_Mutation	SNP	C	G	G			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYT1	6857	broad.mit.edu	37	12	79747420	79747420	+	Intron	SNP	G	T	T			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYT9	143425	broad.mit.edu	37	11	7324269	7324269	+	Splice_Site	SNP	G	C	C			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYTL5	94122	broad.mit.edu	37	X	37969676	37969676	+	Missense_Mutation	SNP	C	A	A			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAAR8	83551	broad.mit.edu	37	6	132874369	132874369	+	Missense_Mutation	SNP	G	T	T			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TACC2	10579	broad.mit.edu	37	10	124008071	124008071	+	Intron	SNP	G	T	T			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TADA2A	6871	broad.mit.edu	37	17	35831204	35831204	+	Silent	SNP	C	A	A			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAZ	6901	broad.mit.edu	37	X	153648608	153648608	+	Intron	SNP	G	T	T			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBX1	6899	broad.mit.edu	37	22	19752613	19752613	+	Missense_Mutation	SNP	G	T	T			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TCF4	6925	broad.mit.edu	37	18	52928796	52928796	+	Intron	SNP	A	T	T			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TDRD5	163589	broad.mit.edu	37	1	179562702	179562702	+	Nonsense_Mutation	SNP	G	T	T			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TDRD5	163589	broad.mit.edu	37	1	179603746	179603746	+	Silent	SNP	G	T	T			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TESK1	7016	broad.mit.edu	37	9	35606261	35606261	+	Silent	SNP	A	T	T			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TGFBRAP1	9392	broad.mit.edu	37	2	105924050	105924050	+	Intron	SNP	G	A	A			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TG	7038	broad.mit.edu	37	8	133882039	133882039	+	Missense_Mutation	SNP	T	C	C			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
THOC2	57187	broad.mit.edu	37	X	122760347	122760347	+	Intron	SNP	G	T	T			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMCO1	54499	broad.mit.edu	37	1	165737881	165737881	+	Intron	SNP	G	T	T			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM149	79713	broad.mit.edu	37	19	36236379	36236379	+	5'Flank	SNP	A	T	T			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNFRSF11A	8792	broad.mit.edu	37	18	60027181	60027181	+	Intron	SNP	C	A	A			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TOP2A	7153	broad.mit.edu	37	17	38567726	38567726	+	Intron	SNP	A	G	G			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TP53BP1	7158	broad.mit.edu	37	15	43748729	43748729	+	Missense_Mutation	SNP	G	A	A			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPR	7175	broad.mit.edu	37	1	186324979	186324979	+	Intron	SNP	C	G	G			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIM6-TRIM34	445372	broad.mit.edu	37	11	5624904	5624904	+	Missense_Mutation	SNP	G	A	A			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPM1	4308	broad.mit.edu	37	15	31340193	31340193	+	Intron	SNP	C	T	T			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPM6	140803	broad.mit.edu	37	9	77377968	77377968	+	Nonsense_Mutation	SNP	G	A	A			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPV4	59341	broad.mit.edu	37	12	110226535	110226535	+	Intron	SNP	G	T	T			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TSTA3	7264	broad.mit.edu	37	8	144698279	144698279	+	Silent	SNP	G	A	A			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTC37	9652	broad.mit.edu	37	5	94830477	94830477	+	Silent	SNP	C	A	A	rs147416417	by1000genomes	TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179395805	179395805	+	Silent	SNP	G	C	C			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179428039	179428039	+	Missense_Mutation	SNP	A	C	C			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179575972	179575972	+	Missense_Mutation	SNP	A	C	C			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TUBB4Q	56604	broad.mit.edu	37	4	190905532	190905532	+	Intron	SNP	G	T	T			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TULP4	56995	broad.mit.edu	37	6	158923658	158923658	+	Missense_Mutation	SNP	G	A	A	rs143675661		TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
U2AF1	7307	broad.mit.edu	37	21	44524456	44524456	+	Missense_Mutation	SNP	G	A	A			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UCHL5	51377	broad.mit.edu	37	1	192992151	192992151	+	Missense_Mutation	SNP	C	T	T			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UGT2B10	7365	broad.mit.edu	37	4	69885531	69885531	+	Missense_Mutation	SNP	G	A	A			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USH2A	7399	broad.mit.edu	37	1	216172314	216172314	+	Missense_Mutation	SNP	C	G	G			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USH2A	7399	broad.mit.edu	37	1	216270427	216270427	+	Missense_Mutation	SNP	G	T	T			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USH2A	7399	broad.mit.edu	37	1	216595317	216595317	+	Missense_Mutation	SNP	T	C	C			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP21	27005	broad.mit.edu	37	1	161133556	161133556	+	Intron	SNP	G	T	T			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	52487165	52487165	+	IGR	SNP	G	C	C			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	94968308	94968308	+	IGR	SNP	C	A	A			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	123880521	123880521	+	IGR	SNP	C	A	A			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	57970598	57970598	+	IGR	SNP	G	T	T			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	10658669	10658669	+	IGR	SNP	A	T	T			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	15408614	15408614	+	IGR	SNP	G	T	T			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	19393386	19393386	+	IGR	SNP	C	T	T			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	45169755	45169755	+	IGR	SNP	G	T	T			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	65884915	65884915	+	IGR	SNP	G	T	T			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	20264469	20264469	+	IGR	SNP	T	C	C			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	21631960	21631960	+	IGR	SNP	G	T	T			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	20448147	20448147	+	IGR	SNP	G	A	A			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	32822386	32822386	+	IGR	SNP	A	G	G			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	26080441	26080441	+	IGR	SNP	T	A	A			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	42002308	42002308	+	IGR	SNP	C	A	A			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	14156336	14156336	+	IGR	SNP	T	G	G			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	16101114	16101114	+	IGR	SNP	A	T	T			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	22498697	22498697	+	IGR	SNP	T	A	A			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	23040826	23040826	+	IGR	SNP	T	A	A			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	23688208	23688208	+	IGR	SNP	C	A	A			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	143491717	143491717	+	IGR	SNP	A	G	G			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	149059977	149059977	+	IGR	SNP	G	T	T			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	166245541	166245542	+	IGR	DNP	CA	AT	AT			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	192216564	192216564	+	IGR	SNP	C	A	A			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	246676369	246676369	+	IGR	SNP	C	T	T			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	28679656	28679656	+	IGR	SNP	G	T	T			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	10885057	10885057	+	IGR	SNP	G	C	C			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	9590451	9590451	+	IGR	SNP	A	T	T			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	22	17063450	17063450	+	IGR	SNP	C	A	A			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	131266641	131266641	+	IGR	SNP	T	A	A			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	131266652	131266652	+	IGR	SNP	T	C	C			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	162362629	162362629	+	IGR	SNP	G	A	A			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	162362671	162362671	+	IGR	SNP	C	T	T			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	176190052	176190052	+	IGR	SNP	C	A	A			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	184472332	184472332	+	IGR	SNP	C	A	A			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	219818536	219818536	+	IGR	SNP	T	C	C			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	219818660	219818661	+	IGR	DNP	CG	TT	TT			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	91800506	91800506	+	IGR	SNP	C	T	T			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	141583952	141583952	+	IGR	SNP	T	C	C			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	147309271	147309271	+	IGR	SNP	C	A	A			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	183745331	183745331	+	IGR	SNP	T	A	A			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	189884718	189884718	+	IGR	SNP	A	G	G			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	35257822	35257822	+	IGR	SNP	C	T	T			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	110800785	110800785	+	IGR	SNP	C	A	A			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	116842383	116842383	+	IGR	SNP	G	T	T			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	122998964	122998964	+	IGR	SNP	C	A	A			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	137276905	137276905	+	IGR	SNP	G	T	T			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	162843615	162843615	+	IGR	SNP	C	T	T			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	26670458	26670458	+	IGR	SNP	C	G	G			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	31053749	31053749	+	IGR	SNP	C	A	A			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	32522873	32522873	+	IGR	SNP	G	T	T			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	57457503	57457503	+	IGR	SNP	G	T	T			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	88416433	88416433	+	IGR	SNP	A	T	T			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	143839798	143839798	+	IGR	SNP	C	A	A			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	144702763	144702763	+	IGR	SNP	G	T	T			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	61819061	61819061	+	IGR	SNP	G	T	T			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	43314474	43314474	+	IGR	SNP	C	A	A			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	43614866	43614866	+	IGR	SNP	C	T	T			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	67331257	67331257	+	IGR	SNP	C	A	A			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	76090556	76090556	+	IGR	SNP	G	C	C			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	133303350	133303350	+	IGR	SNP	T	A	A			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	134843858	134843858	+	IGR	SNP	C	A	A			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	135378977	135378977	+	IGR	SNP	G	T	T			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	140233170	140233170	+	IGR	SNP	C	A	A			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	146280438	146280438	+	IGR	SNP	T	C	C			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	35077873	35077873	+	IGR	SNP	G	T	T			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	52858239	52858239	+	IGR	SNP	G	T	T			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	68004661	68004661	+	IGR	SNP	C	A	A			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	68004817	68004817	+	IGR	SNP	C	A	A			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	74965803	74965803	+	IGR	SNP	T	C	C			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VCX3B	425054	broad.mit.edu	37	X	8433568	8433568	+	Missense_Mutation	SNP	C	A	A			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VNN3	55350	broad.mit.edu	37	6	133048154	133048154	+	Intron	SNP	G	A	A			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VPS13B	157680	broad.mit.edu	37	8	100520069	100520069	+	Missense_Mutation	SNP	G	T	T			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VPS13C	54832	broad.mit.edu	37	15	62302683	62302683	+	Silent	SNP	C	A	A			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VWCE	220001	broad.mit.edu	37	11	61026563	61026563	+	Missense_Mutation	SNP	C	T	T			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WASF3	10810	broad.mit.edu	37	13	27256622	27256622	+	Intron	SNP	G	T	T			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR44	54521	broad.mit.edu	37	X	117543510	117543510	+	Missense_Mutation	SNP	A	T	T			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR44	54521	broad.mit.edu	37	X	117566679	117566679	+	Intron	SNP	G	A	A			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR62	284403	broad.mit.edu	37	19	36580003	36580003	+	Missense_Mutation	SNP	A	T	T			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR64	128025	broad.mit.edu	37	1	241913018	241913018	+	Missense_Mutation	SNP	G	T	T			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WNK3	65267	broad.mit.edu	37	X	54259271	54259271	+	Missense_Mutation	SNP	G	T	T			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WWC1	23286	broad.mit.edu	37	5	167850491	167850491	+	Intron	SNP	C	A	A			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WWC3	55841	broad.mit.edu	37	X	10092351	10092351	+	Missense_Mutation	SNP	G	C	C			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
YIPF7	285525	broad.mit.edu	37	4	44624594	44624594	+	Intron	SNP	C	A	A			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZAN	7455	broad.mit.edu	37	7	100388611	100388611	+	Nonsense_Mutation	SNP	G	T	T			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZFHX4	79776	broad.mit.edu	37	8	77616716	77616716	+	Silent	SNP	C	A	A			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZFHX4	79776	broad.mit.edu	37	8	77766156	77766156	+	Missense_Mutation	SNP	G	T	T			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF131	7690	broad.mit.edu	37	5	43161516	43161516	+	Silent	SNP	G	T	T			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF260	339324	broad.mit.edu	37	19	37005826	37005826	+	Silent	SNP	G	A	A			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF271	10778	broad.mit.edu	37	18	32887120	32887120	+	Missense_Mutation	SNP	G	T	T	rs142309584		TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF277	11179	broad.mit.edu	37	7	111970197	111970197	+	Missense_Mutation	SNP	A	G	G			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF304	57343	broad.mit.edu	37	19	57863000	57863000	+	5'UTR	SNP	G	T	T			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF317	57693	broad.mit.edu	37	19	9270789	9270789	+	Splice_Site	SNP	G	A	A			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF33B	7582	broad.mit.edu	37	10	43088981	43088981	+	Missense_Mutation	SNP	C	G	G			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF385D	79750	broad.mit.edu	37	3	21706497	21706497	+	Missense_Mutation	SNP	G	T	T			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF445	353274	broad.mit.edu	37	3	44540778	44540778	+	Intron	SNP	A	T	T			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF521	25925	broad.mit.edu	37	18	22804600	22804600	+	Silent	SNP	G	T	T			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF528	84436	broad.mit.edu	37	19	52919344	52919344	+	Missense_Mutation	SNP	G	T	T			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF536	9745	broad.mit.edu	37	19	30936068	30936068	+	Missense_Mutation	SNP	G	T	T			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF548	147694	broad.mit.edu	37	19	57908328	57908328	+	Intron	SNP	G	C	C			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF549	256051	broad.mit.edu	37	19	58067432	58067432	+	3'UTR	SNP	G	A	A			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF713	349075	broad.mit.edu	37	7	55990882	55990882	+	Missense_Mutation	SNP	G	T	T			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF772	400720	broad.mit.edu	37	19	57985662	57985662	+	Silent	SNP	G	T	T			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF813	126017	broad.mit.edu	37	19	53986964	53986964	+	Intron	SNP	G	T	T			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF836	162962	broad.mit.edu	37	19	52658445	52658445	+	Missense_Mutation	SNP	C	A	A			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF83	55769	broad.mit.edu	37	19	53158725	53158725	+	Intron	SNP	C	A	A			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF846	162993	broad.mit.edu	37	19	9872753	9872753	+	Intron	SNP	C	A	A			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZPLD1	131368	broad.mit.edu	37	3	102187791	102187791	+	Intron	SNP	C	A	A			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZRANB3	84083	broad.mit.edu	37	2	135988469	135988469	+	Missense_Mutation	SNP	C	G	G			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZSCAN5B	342933	broad.mit.edu	37	19	56701419	56701419	+	Missense_Mutation	SNP	T	A	A			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZWINT	11130	broad.mit.edu	37	10	58118214	58118214	+	Missense_Mutation	SNP	C	A	A			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	103708260	103708260	+	RNA	SNP	G	T	T			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	22251518	22251518	+	Intron	SNP	G	T	T	rs144137393	by1000genomes	TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	22564558	22564558	+	Intron	SNP	T	A	A			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	25430955	25430955	+	Intron	SNP	G	T	T			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	28996881	28996881	+	Intron	SNP	C	A	A			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	20405363	20405363	+	Intron	SNP	G	C	C			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	20688777	20688777	+	5'Flank	SNP	T	G	G			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	186671918	186671918	+	Intron	SNP	T	A	A			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	85166433	85166433	+	Intron	SNP	C	A	A			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	12794620	12794620	+	Intron	SNP	C	A	A			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	142180781	142180781	+	Intron	SNP	G	T	T			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	142231581	142231581	+	Intron	SNP	G	T	T			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	142471739	142471739	+	Intron	SNP	C	A	A			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	63369613	63369613	+	Intron	SNP	C	A	A			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	48159066	48159066	+	Splice_Site	SNP	C	G	G			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
