Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer
AADACL4	343066	broad.mit.edu	37	1	12726347	12726347	+	Silent	SNP	A	G	G			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCA13	154664	broad.mit.edu	37	7	48337962	48337962	+	Splice_Site	SNP	G	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCA5	23461	broad.mit.edu	37	17	67256427	67256427	+	Intron	SNP	C	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCA5	23461	broad.mit.edu	37	17	67290774	67290774	+	Intron	SNP	G	C	C			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCA9	10350	broad.mit.edu	37	17	66992188	66992188	+	Intron	SNP	G	C	C			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCA9	10350	broad.mit.edu	37	17	67024558	67024558	+	Intron	SNP	G	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCB11	8647	broad.mit.edu	37	2	169792048	169792048	+	Intron	SNP	G	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCB11	8647	broad.mit.edu	37	2	169869891	169869891	+	Missense_Mutation	SNP	C	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCB11	8647	broad.mit.edu	37	2	169869897	169869897	+	Missense_Mutation	SNP	C	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCC11	85320	broad.mit.edu	37	16	48249115	48249115	+	Silent	SNP	G	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCC12	94160	broad.mit.edu	37	16	48138975	48138975	+	Intron	SNP	C	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABHD12	26090	broad.mit.edu	37	20	25349327	25349327	+	Intron	SNP	T	G	G			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABLIM3	22885	broad.mit.edu	37	5	148620448	148620448	+	Intron	SNP	G	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACACB	32	broad.mit.edu	37	12	109634706	109634706	+	Intron	SNP	G	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACCN1	40	broad.mit.edu	37	17	32364844	32364844	+	Intron	SNP	C	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACE2	59272	broad.mit.edu	37	X	15612929	15612929	+	Intron	SNP	C	G	G			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACSF2	80221	broad.mit.edu	37	17	48538812	48538812	+	Intron	SNP	A	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACTL6B	51412	broad.mit.edu	37	7	100253029	100253029	+	Intron	SNP	G	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACTN3	89	broad.mit.edu	37	11	66330219	66330219	+	Intron	SNP	C	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACTN4	81	broad.mit.edu	37	19	39199959	39199959	+	Intron	SNP	G	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACVR1	90	broad.mit.edu	37	2	158656025	158656036	+	Intron	DEL	AAGAAGAGATGT	-	-			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACVRL1	94	broad.mit.edu	37	12	52312932	52312932	+	Intron	SNP	G	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAD1	132612	broad.mit.edu	37	4	123317394	123317394	+	Intron	SNP	G	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM22	53616	broad.mit.edu	37	7	87758029	87758030	+	Intron	DNP	AG	TA	TA			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM33	80332	broad.mit.edu	37	20	3652068	3652068	+	Missense_Mutation	SNP	C	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM6	8755	broad.mit.edu	37	14	106091726	106091726	+	Intron	SNP	G	C	C			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM6	8755	broad.mit.edu	37	14	106091785	106091785	+	Intron	SNP	G	C	C			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM6	8755	broad.mit.edu	37	14	106091995	106091995	+	Intron	SNP	G	C	C			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM6	8755	broad.mit.edu	37	14	106321388	106321388	+	Intron	SNP	C	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM6	8755	broad.mit.edu	37	14	106714384	106714384	+	RNA	SNP	G	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM6	8755	broad.mit.edu	37	14	106966933	106966933	+	Intron	DEL	C	-	-			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM6	8755	broad.mit.edu	37	14	107099440	107099440	+	RNA	SNP	C	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS12	81792	broad.mit.edu	37	5	33588844	33588844	+	Silent	SNP	G	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS12	81792	broad.mit.edu	37	5	33658415	33658415	+	Missense_Mutation	SNP	T	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS16	170690	broad.mit.edu	37	5	5182041	5182041	+	Intron	SNP	G	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS17	170691	broad.mit.edu	37	15	100636612	100636612	+	Missense_Mutation	SNP	C	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS17	170691	broad.mit.edu	37	15	100649100	100649100	+	Intron	SNP	C	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAP1	11033	broad.mit.edu	37	7	1009256	1009256	+	Intron	SNP	A	G	G			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADCY8	114	broad.mit.edu	37	8	131848553	131848553	+	Missense_Mutation	SNP	A	G	G			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADCYAP1R1	117	broad.mit.edu	37	7	31124338	31124338	+	Intron	SNP	G	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADD1	118	broad.mit.edu	37	4	2901114	2901114	+	Silent	SNP	G	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADD2	119	broad.mit.edu	37	2	70901905	70901905	+	Missense_Mutation	SNP	G	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADH1A	124	broad.mit.edu	37	4	100205962	100205962	+	Splice_Site	SNP	T	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADH1A	124	broad.mit.edu	37	4	100205964	100205964	+	Intron	SNP	G	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADH1C	126	broad.mit.edu	37	4	100264040	100264040	+	Missense_Mutation	SNP	T	C	C			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADH5	128	broad.mit.edu	37	4	99996201	99996201	+	Splice_Site	SNP	C	G	G			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADSL	158	broad.mit.edu	37	22	40762371	40762371	+	Intron	SNP	A	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AFM	173	broad.mit.edu	37	4	74363525	74363525	+	Intron	SNP	C	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AHI1	54806	broad.mit.edu	37	6	135611406	135611406	+	Intron	SNP	A	G	G			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AHNAK	79026	broad.mit.edu	37	11	62293042	62293042	+	Silent	SNP	G	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AIRE	326	broad.mit.edu	37	21	45710008	45710008	+	Intron	SNP	T	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AKAP13	11214	broad.mit.edu	37	15	86262211	86262211	+	Intron	SNP	G	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AKAP6	9472	broad.mit.edu	37	14	33015819	33015819	+	Silent	SNP	C	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALG10	84920	broad.mit.edu	37	12	34179132	34179132	+	Missense_Mutation	SNP	A	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALKBH8	91801	broad.mit.edu	37	11	107423852	107423852	+	Missense_Mutation	SNP	C	G	G			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANAPC4	29945	broad.mit.edu	37	4	25408419	25408423	+	Intron	DEL	TTGAT	-	-			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANK2	287	broad.mit.edu	37	4	114195867	114195867	+	Intron	SNP	C	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKRD20B	729171	broad.mit.edu	37	2	95481402	95481402	+	Missense_Mutation	SNP	C	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKRD22	118932	broad.mit.edu	37	10	90582810	90582810	+	Intron	SNP	G	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKRD27	84079	broad.mit.edu	37	19	33090556	33090556	+	Intron	SNP	T	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKRD29	147463	broad.mit.edu	37	18	21229076	21229076	+	Missense_Mutation	SNP	C	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKRD33	341405	broad.mit.edu	37	12	52282534	52282534	+	5'UTR	SNP	C	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKRD44	91526	broad.mit.edu	37	2	198011905	198011905	+	Intron	SNP	T	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKRD53	79998	broad.mit.edu	37	2	71209077	71209077	+	Missense_Mutation	SNP	A	G	G			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANO2	57101	broad.mit.edu	37	12	5672696	5672696	+	Missense_Mutation	SNP	C	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AOX1	316	broad.mit.edu	37	2	201523957	201523957	+	Missense_Mutation	SNP	C	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AP1G1	164	broad.mit.edu	37	16	71808351	71808351	+	Intron	SNP	G	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AP3D1	8943	broad.mit.edu	37	19	2114305	2114305	+	Intron	SNP	G	C	C			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AP4M1	9179	broad.mit.edu	37	7	99703464	99703482	+	Intron	DEL	TTTCCCTCTTGGGAGTACA	-	-			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
APCDD1L	164284	broad.mit.edu	37	20	57042210	57042210	+	Missense_Mutation	SNP	C	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
APC	324	broad.mit.edu	37	5	112173704	112173704	+	Frame_Shift_Del	DEL	C	-	-			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
APOB	338	broad.mit.edu	37	2	21246300	21246300	+	Intron	SNP	C	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AQP12B	653437	broad.mit.edu	37	2	241621957	241621957	+	Missense_Mutation	SNP	C	G	G			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARAP2	116984	broad.mit.edu	37	4	36150074	36150074	+	Missense_Mutation	SNP	C	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGAP11B	89839	broad.mit.edu	37	15	30930917	30930917	+	Intron	SNP	G	C	C			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGAP36	158763	broad.mit.edu	37	X	130218276	130218276	+	Missense_Mutation	SNP	A	G	G			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGAP5	394	broad.mit.edu	37	14	32563472	32563472	+	Silent	SNP	A	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGEF11	9826	broad.mit.edu	37	1	156914132	156914132	+	Intron	SNP	C	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGEF12	23365	broad.mit.edu	37	11	120300646	120300646	+	Intron	SNP	C	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGEF12	23365	broad.mit.edu	37	11	120338034	120338034	+	Intron	SNP	G	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGEF17	9828	broad.mit.edu	37	11	73067668	73067668	+	Intron	SNP	G	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGEF38	54848	broad.mit.edu	37	4	106510664	106510664	+	Intron	SNP	G	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGEF6	9459	broad.mit.edu	37	X	135761524	135761524	+	Intron	SNP	A	G	G			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARID1A	8289	broad.mit.edu	37	1	27092956	27092957	+	Frame_Shift_Ins	INS	-	C	C			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARID4A	5926	broad.mit.edu	37	14	58795064	58795064	+	Intron	SNP	G	C	C			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARL6IP1	23204	broad.mit.edu	37	16	18806799	18806799	+	Missense_Mutation	SNP	T	C	C			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASPM	259266	broad.mit.edu	37	1	197070516	197070516	+	Missense_Mutation	SNP	T	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASPM	259266	broad.mit.edu	37	1	197111524	197111524	+	Missense_Mutation	SNP	C	G	G			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASRGL1	80150	broad.mit.edu	37	11	62159033	62159033	+	Missense_Mutation	SNP	C	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASTN1	460	broad.mit.edu	37	1	176934192	176934192	+	Intron	SNP	C	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASTN2	23245	broad.mit.edu	37	9	119770302	119770302	+	Intron	SNP	G	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP1A3	478	broad.mit.edu	37	19	42479737	42479737	+	Intron	SNP	C	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP1B2	482	broad.mit.edu	37	17	7557847	7557847	+	Intron	SNP	C	A	A	rs138128532	by1000genomes	TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP2C1	27032	broad.mit.edu	37	3	130711883	130711883	+	Intron	SNP	A	G	G			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP6V0A1	535	broad.mit.edu	37	17	40666370	40666370	+	Missense_Mutation	SNP	G	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP8B2	57198	broad.mit.edu	37	1	154313263	154313263	+	Intron	SNP	A	C	C			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATRNL1	26033	broad.mit.edu	37	10	117704234	117704234	+	Missense_Mutation	SNP	A	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BBS9	27241	broad.mit.edu	37	7	33407239	33407239	+	Intron	SNP	G	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BBS9	27241	broad.mit.edu	37	7	33427748	33427748	+	Missense_Mutation	SNP	T	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BEX5	340542	broad.mit.edu	37	X	101409280	101409280	+	Intron	SNP	A	G	G			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BMP7	655	broad.mit.edu	37	20	55748407	55748407	+	Intron	SNP	C	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BRD1	23774	broad.mit.edu	37	22	50211243	50211243	+	Intron	SNP	C	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BRDT	676	broad.mit.edu	37	1	92442839	92442839	+	Missense_Mutation	SNP	G	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BRS3	680	broad.mit.edu	37	X	135570277	135570277	+	Missense_Mutation	SNP	G	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BRWD3	254065	broad.mit.edu	37	X	79939720	79939720	+	Intron	SNP	C	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BSCL2	26580	broad.mit.edu	37	11	62459865	62459865	+	Silent	SNP	C	G	G			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BTNL8	79908	broad.mit.edu	37	5	180375507	180375507	+	Intron	SNP	T	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BUB1B	701	broad.mit.edu	37	15	40512823	40512823	+	Missense_Mutation	SNP	G	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BZRAP1	9256	broad.mit.edu	37	17	56397414	56397414	+	Intron	SNP	G	C	C			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BZRAP1	9256	broad.mit.edu	37	17	56404911	56404911	+	Intron	SNP	C	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C10orf47	254427	broad.mit.edu	37	10	11894129	11894129	+	Frame_Shift_Del	DEL	C	-	-			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C11orf41	25758	broad.mit.edu	37	11	33564735	33564735	+	Silent	SNP	C	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C14orf135	64430	broad.mit.edu	37	14	60591648	60591648	+	Missense_Mutation	SNP	G	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C14orf145	145508	broad.mit.edu	37	14	80997134	80997134	+	Intron	SNP	C	G	G			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C14orf159	80017	broad.mit.edu	37	14	91626633	91626633	+	5'UTR	SNP	G	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C14orf49	161176	broad.mit.edu	37	14	95932316	95932316	+	Silent	SNP	G	C	C			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C14orf50	145376	broad.mit.edu	37	14	65054946	65054946	+	Missense_Mutation	SNP	G	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C14orf79	122616	broad.mit.edu	37	14	105453293	105453293	+	Intron	SNP	G	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C17orf107	100130311	broad.mit.edu	37	17	4804508	4804508	+	3'UTR	SNP	G	C	C			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C17orf56	146705	broad.mit.edu	37	17	79205613	79205613	+	Intron	SNP	G	C	C			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C18orf1	753	broad.mit.edu	37	18	13387586	13387586	+	5'UTR	SNP	G	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C18orf34	374864	broad.mit.edu	37	18	30803087	30803087	+	Missense_Mutation	SNP	C	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C18orf34	374864	broad.mit.edu	37	18	30873090	30873090	+	Intron	SNP	C	G	G			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C19orf18	147685	broad.mit.edu	37	19	58473089	58473089	+	Intron	SNP	C	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf59	113802	broad.mit.edu	37	1	109200156	109200156	+	Missense_Mutation	SNP	T	C	C			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C20orf107	388799	broad.mit.edu	37	20	55108465	55108465	+	Intron	SNP	C	G	G			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C20orf114	92747	broad.mit.edu	37	20	31893985	31893985	+	Intron	SNP	G	C	C			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C20orf160	140706	broad.mit.edu	37	20	30602724	30602724	+	Silent	SNP	C	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C21orf99	149992	broad.mit.edu	37	21	14414970	14414970	+	Intron	SNP	G	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C22orf31	25770	broad.mit.edu	37	22	29454768	29454768	+	Missense_Mutation	SNP	C	G	G			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C2CD3	26005	broad.mit.edu	37	11	73748715	73748715	+	Nonsense_Mutation	SNP	G	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C2orf62	375307	broad.mit.edu	37	2	219225397	219225397	+	Intron	SNP	C	G	G			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C2orf67	151050	broad.mit.edu	37	2	210887816	210887816	+	Missense_Mutation	SNP	C	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C3	718	broad.mit.edu	37	19	6682076	6682076	+	Intron	SNP	T	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C3orf15	89876	broad.mit.edu	37	3	119428747	119428747	+	3'UTR	SNP	G	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C3orf62	375341	broad.mit.edu	37	3	49313794	49313794	+	Intron	SNP	C	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C4orf40	401137	broad.mit.edu	37	4	71024352	71024352	+	Missense_Mutation	SNP	C	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C4orf41	60684	broad.mit.edu	37	4	184626183	184626183	+	Silent	SNP	G	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C5orf33	133686	broad.mit.edu	37	5	36201245	36201245	+	Missense_Mutation	SNP	C	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C6orf103	79747	broad.mit.edu	37	6	147124270	147124270	+	Intron	SNP	C	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C6orf154	221424	broad.mit.edu	37	6	43477341	43477341	+	Silent	SNP	G	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C6orf170	221322	broad.mit.edu	37	6	121544316	121544317	+	Intron	DNP	CC	AA	AA			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C6orf186	728464	broad.mit.edu	37	6	110620078	110620078	+	Intron	SNP	G	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C6orf48	50854	broad.mit.edu	37	6	31804940	31804940	+	Intron	SNP	G	C	C			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C6orf58	352999	broad.mit.edu	37	6	127898647	127898647	+	Intron	SNP	G	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C7orf63	79846	broad.mit.edu	37	7	89906720	89906720	+	Intron	SNP	G	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C8orf22	492307	broad.mit.edu	37	8	49986681	49986681	+	Missense_Mutation	SNP	A	G	G			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C8orf46	254778	broad.mit.edu	37	8	67405782	67405782	+	5'UTR	SNP	G	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C9orf131	138724	broad.mit.edu	37	9	35045018	35045018	+	Missense_Mutation	SNP	C	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C9orf93	203238	broad.mit.edu	37	9	15721814	15721814	+	Nonsense_Mutation	SNP	G	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CA10	56934	broad.mit.edu	37	17	49713356	49713356	+	Missense_Mutation	SNP	G	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CA10	56934	broad.mit.edu	37	17	50008332	50008332	+	Intron	SNP	A	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CA12	771	broad.mit.edu	37	15	63632874	63632874	+	Intron	SNP	C	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CA3	761	broad.mit.edu	37	8	86354306	86354306	+	Silent	SNP	G	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CABIN1	23523	broad.mit.edu	37	22	24515486	24515486	+	Missense_Mutation	SNP	G	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1A	773	broad.mit.edu	37	19	13365936	13365936	+	Silent	SNP	G	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1C	775	broad.mit.edu	37	12	2797486	2797487	+	Intron	DNP	TG	AT	AT			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1I	8911	broad.mit.edu	37	22	40066630	40066630	+	Intron	SNP	C	G	G			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1S	779	broad.mit.edu	37	1	201031711	201031711	+	Intron	SNP	C	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA2D1	781	broad.mit.edu	37	7	81599141	81599141	+	Intron	SNP	G	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA2D1	781	broad.mit.edu	37	7	81641520	81641520	+	Missense_Mutation	SNP	C	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CADPS	8618	broad.mit.edu	37	3	62484955	62484955	+	Intron	SNP	G	C	C			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CAD	790	broad.mit.edu	37	2	27462633	27462633	+	Silent	SNP	A	C	C			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CALB2	794	broad.mit.edu	37	16	71417337	71417337	+	Missense_Mutation	SNP	C	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CALCOCO2	10241	broad.mit.edu	37	17	46930408	46930408	+	Intron	SNP	A	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CALD1	800	broad.mit.edu	37	7	134645466	134645466	+	Intron	SNP	G	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CAMK2B	816	broad.mit.edu	37	7	44294023	44294023	+	Intron	SNP	G	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CAMSAP1	157922	broad.mit.edu	37	9	138712840	138712840	+	Missense_Mutation	SNP	C	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CAPN6	827	broad.mit.edu	37	X	110490676	110490676	+	Missense_Mutation	SNP	G	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CAPRIN2	65981	broad.mit.edu	37	12	30878879	30878879	+	Intron	SNP	G	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CARD11	84433	broad.mit.edu	37	7	2963803	2963803	+	Intron	SNP	G	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CARD11	84433	broad.mit.edu	37	7	2972221	2972221	+	Splice_Site	SNP	C	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CARD6	84674	broad.mit.edu	37	5	40853546	40853546	+	Missense_Mutation	SNP	G	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CASZ1	54897	broad.mit.edu	37	1	10714191	10714191	+	Silent	SNP	G	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CATSPER1	117144	broad.mit.edu	37	11	65788445	65788445	+	Intron	SNP	C	G	G			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CBFA2T3	863	broad.mit.edu	37	16	88968122	88968122	+	Intron	SNP	C	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CBWD1	55871	broad.mit.edu	37	9	123110	123110	+	Intron	SNP	C	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC102A	92922	broad.mit.edu	37	16	57562734	57562734	+	Missense_Mutation	SNP	C	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC132	55610	broad.mit.edu	37	7	92970666	92970666	+	Intron	SNP	A	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC19	25790	broad.mit.edu	37	1	159854433	159854433	+	Intron	SNP	C	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC19	25790	broad.mit.edu	37	1	159854441	159854441	+	Intron	SNP	T	C	C			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC73	493860	broad.mit.edu	37	11	32657332	32657332	+	Missense_Mutation	SNP	T	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC73	493860	broad.mit.edu	37	11	32675501	32675501	+	Intron	SNP	C	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC91	55297	broad.mit.edu	37	12	28412225	28412226	+	Intron	DNP	GG	TT	TT			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC91	55297	broad.mit.edu	37	12	28603339	28603339	+	Silent	SNP	A	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCKBR	887	broad.mit.edu	37	11	6292013	6292013	+	Missense_Mutation	SNP	G	C	C			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCNB3	85417	broad.mit.edu	37	X	50053312	50053312	+	Missense_Mutation	SNP	G	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCT4	10575	broad.mit.edu	37	2	62112193	62112193	+	Missense_Mutation	SNP	T	C	C			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD180	4064	broad.mit.edu	37	5	66479106	66479106	+	Missense_Mutation	SNP	A	C	C			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD38	952	broad.mit.edu	37	4	15780139	15780139	+	Silent	SNP	C	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD38	952	broad.mit.edu	37	4	15835864	15835864	+	Missense_Mutation	SNP	A	G	G			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDC42BPA	8476	broad.mit.edu	37	1	227300367	227300367	+	Intron	SNP	C	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDCA8	55143	broad.mit.edu	37	1	38168930	38168930	+	Silent	SNP	C	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH11	1009	broad.mit.edu	37	16	65026828	65026828	+	Silent	SNP	T	C	C			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH20	28316	broad.mit.edu	37	18	59203554	59203554	+	Intron	SNP	G	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH2	1000	broad.mit.edu	37	18	25593913	25593913	+	Intron	DEL	C	-	-			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH6	1004	broad.mit.edu	37	5	31294250	31294250	+	Missense_Mutation	SNP	G	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH6	1004	broad.mit.edu	37	5	31299713	31299713	+	Silent	SNP	C	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH6	1004	broad.mit.edu	37	5	31323173	31323173	+	Missense_Mutation	SNP	G	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH7	1005	broad.mit.edu	37	18	63548088	63548088	+	Silent	SNP	C	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDK18	5129	broad.mit.edu	37	1	205495285	205495285	+	Silent	SNP	G	A	A	rs138968428		TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDK5RAP2	55755	broad.mit.edu	37	9	123184882	123184882	+	Intron	SNP	G	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDX4	1046	broad.mit.edu	37	X	72673394	72673394	+	Missense_Mutation	SNP	G	C	C			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CELA3B	23436	broad.mit.edu	37	1	22303732	22303732	+	Intron	SNP	T	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CEL	1056	broad.mit.edu	37	9	135942366	135942366	+	Intron	SNP	G	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CER1	9350	broad.mit.edu	37	9	14720083	14720083	+	3'UTR	SNP	G	C	C			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CFHR1	3078	broad.mit.edu	37	1	196794686	196794686	+	Silent	SNP	T	C	C			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CFHR5	81494	broad.mit.edu	37	1	196953241	196953241	+	Missense_Mutation	SNP	C	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CFH	3075	broad.mit.edu	37	1	196711226	196711226	+	Intron	SNP	C	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHD6	84181	broad.mit.edu	37	20	40081486	40081486	+	Missense_Mutation	SNP	T	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHD7	55636	broad.mit.edu	37	8	61654428	61654428	+	Missense_Mutation	SNP	G	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHD7	55636	broad.mit.edu	37	8	61765329	61765329	+	Intron	SNP	T	G	G			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHD9	80205	broad.mit.edu	37	16	53330980	53330980	+	Missense_Mutation	SNP	C	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHFR	55743	broad.mit.edu	37	12	133434066	133434066	+	Missense_Mutation	SNP	G	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHL1	10752	broad.mit.edu	37	3	419533	419533	+	Missense_Mutation	SNP	C	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHL1	10752	broad.mit.edu	37	3	432621	432621	+	Intron	SNP	T	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHRNA7	1139	broad.mit.edu	37	15	32460267	32460267	+	Missense_Mutation	SNP	G	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CIITA	4261	broad.mit.edu	37	16	11012196	11012196	+	Intron	SNP	C	T	T	rs45563036	by1000genomes	TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CIZ1	25792	broad.mit.edu	37	9	130943118	130943118	+	Intron	SNP	G	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLDN12	9069	broad.mit.edu	37	7	90042182	90042182	+	Silent	SNP	C	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLINT1	9685	broad.mit.edu	37	5	157218842	157218842	+	Missense_Mutation	SNP	C	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLNK	116449	broad.mit.edu	37	4	10599628	10599628	+	Missense_Mutation	SNP	G	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLPB	81570	broad.mit.edu	37	11	72070121	72070121	+	Intron	SNP	C	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNGA4	1262	broad.mit.edu	37	11	6265580	6265580	+	Nonsense_Mutation	SNP	G	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNGB3	54714	broad.mit.edu	37	8	87670433	87670433	+	Intron	SNP	C	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNST	163882	broad.mit.edu	37	1	246811078	246811078	+	Missense_Mutation	SNP	G	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTN3	5067	broad.mit.edu	37	3	74413726	74413726	+	Missense_Mutation	SNP	C	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTN6	27255	broad.mit.edu	37	3	1369106	1369106	+	Intron	SNP	G	T	T	rs145695946	by1000genomes	TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTNAP3	79937	broad.mit.edu	37	9	39171152	39171152	+	Intron	SNP	T	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTNAP4	85445	broad.mit.edu	37	16	76573767	76573767	+	Intron	SNP	G	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTROB	116840	broad.mit.edu	37	17	7851702	7851702	+	Intron	SNP	C	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COBRA1	25920	broad.mit.edu	37	9	140157505	140157505	+	Missense_Mutation	SNP	C	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL11A1	1301	broad.mit.edu	37	1	103355923	103355923	+	Intron	SNP	T	C	C			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL22A1	169044	broad.mit.edu	37	8	139749823	139749823	+	Intron	SNP	G	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL24A1	255631	broad.mit.edu	37	1	86524848	86524848	+	Missense_Mutation	SNP	C	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL3A1	1281	broad.mit.edu	37	2	189854878	189854878	+	Intron	SNP	G	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL4A3	1285	broad.mit.edu	37	2	228124819	228124819	+	Intron	SNP	A	G	G			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL4A4	1286	broad.mit.edu	37	2	227919208	227919208	+	Intron	SNP	C	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL4A5	1287	broad.mit.edu	37	X	107823933	107823933	+	Missense_Mutation	SNP	G	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL4A5	1287	broad.mit.edu	37	X	107865899	107865899	+	Intron	SNP	A	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL5A1	1289	broad.mit.edu	37	9	137582640	137582640	+	Intron	SNP	A	G	G			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL5A1	1289	broad.mit.edu	37	9	137713815	137713815	+	Intron	SNP	G	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL7A1	1294	broad.mit.edu	37	3	48611169	48611169	+	Intron	SNP	G	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL7A1	1294	broad.mit.edu	37	3	48613254	48613254	+	Intron	SNP	C	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL9A3	1299	broad.mit.edu	37	20	61453102	61453102	+	Intron	SNP	C	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COPA	1314	broad.mit.edu	37	1	160295244	160295244	+	Intron	SNP	T	C	C			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPA1	1357	broad.mit.edu	37	7	130023266	130023266	+	Missense_Mutation	SNP	G	C	C			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPA4	51200	broad.mit.edu	37	7	129962387	129962387	+	Silent	SNP	C	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPNE5	57699	broad.mit.edu	37	6	36710126	36710126	+	Silent	SNP	G	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPSF2	53981	broad.mit.edu	37	14	92600598	92600598	+	Missense_Mutation	SNP	G	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CRAMP1L	57585	broad.mit.edu	37	16	1709952	1709952	+	Silent	SNP	G	C	C			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CREBBP	1387	broad.mit.edu	37	16	3824524	3824524	+	Intron	SNP	T	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CRHR2	1395	broad.mit.edu	37	7	30701759	30701759	+	Intron	SNP	C	G	G			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CRYBA2	1412	broad.mit.edu	37	2	219856956	219856956	+	Silent	SNP	G	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD2	114784	broad.mit.edu	37	1	33992711	33992711	+	Intron	SNP	A	C	C			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD3	114788	broad.mit.edu	37	8	113237069	113237069	+	Missense_Mutation	SNP	G	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD3	114788	broad.mit.edu	37	8	113420573	113420573	+	Missense_Mutation	SNP	G	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD3	114788	broad.mit.edu	37	8	113504807	113504807	+	Missense_Mutation	SNP	C	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD3	114788	broad.mit.edu	37	8	113988360	113988360	+	Missense_Mutation	SNP	G	C	C			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD3	114788	broad.mit.edu	37	8	114290908	114290908	+	Missense_Mutation	SNP	G	C	C			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CST11	140880	broad.mit.edu	37	20	23433431	23433432	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CST2	1470	broad.mit.edu	37	20	23807252	23807252	+	Missense_Mutation	SNP	C	A	A	rs148108132	byFrequency	TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CT45A5	441521	broad.mit.edu	37	X	134947845	134947845	+	Intron	SNP	C	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CT47B1	643311	broad.mit.edu	37	X	120009188	120009188	+	Missense_Mutation	SNP	G	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTNNA2	1496	broad.mit.edu	37	2	80816720	80816720	+	Intron	SNP	G	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTNNBL1	56259	broad.mit.edu	37	20	36374711	36374712	+	Intron	DNP	GG	AA	AA			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CUX2	23316	broad.mit.edu	37	12	111745146	111745146	+	Intron	SNP	C	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CUX2	23316	broad.mit.edu	37	12	111748204	111748204	+	Frame_Shift_Del	DEL	G	-	-			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CXADR	1525	broad.mit.edu	37	21	18919473	18919473	+	Silent	SNP	C	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CXorf22	170063	broad.mit.edu	37	X	35988934	35988934	+	Missense_Mutation	SNP	G	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP11B1	1584	broad.mit.edu	37	8	143957012	143957012	+	Intron	SNP	G	C	C			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP3A5	1577	broad.mit.edu	37	7	99261603	99261603	+	Silent	SNP	G	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DAB2	1601	broad.mit.edu	37	5	39394497	39394497	+	5'UTR	SNP	C	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DACH2	117154	broad.mit.edu	37	X	85415295	85415295	+	Intron	SNP	C	G	G			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DARC	2532	broad.mit.edu	37	1	159176146	159176146	+	Missense_Mutation	SNP	T	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCHS2	54798	broad.mit.edu	37	4	155157307	155157307	+	Missense_Mutation	SNP	C	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCLRE1B	64858	broad.mit.edu	37	1	114454829	114454829	+	3'UTR	SNP	G	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DDX23	9416	broad.mit.edu	37	12	49231325	49231325	+	Silent	SNP	C	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DDX41	51428	broad.mit.edu	37	5	176940558	176940558	+	Intron	SNP	G	C	C			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DENND1B	163486	broad.mit.edu	37	1	197716133	197716133	+	Intron	SNP	C	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DENND2A	27147	broad.mit.edu	37	7	140246656	140246656	+	Silent	SNP	G	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DGKI	9162	broad.mit.edu	37	7	137150727	137150727	+	Missense_Mutation	SNP	G	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DGKI	9162	broad.mit.edu	37	7	137255965	137255965	+	Missense_Mutation	SNP	C	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DHX15	1665	broad.mit.edu	37	4	24531295	24531295	+	Nonsense_Mutation	SNP	C	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DHX29	54505	broad.mit.edu	37	5	54552476	54552476	+	Intron	SNP	G	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DHX35	60625	broad.mit.edu	37	20	37623552	37623552	+	Intron	SNP	C	G	G			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DIP2A	23181	broad.mit.edu	37	21	47957423	47957423	+	Missense_Mutation	SNP	C	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DIP2A	23181	broad.mit.edu	37	21	47974083	47974083	+	Missense_Mutation	SNP	G	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DIP2C	22982	broad.mit.edu	37	10	410293	410293	+	Intron	SNP	G	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DIS3	22894	broad.mit.edu	37	13	73348154	73348154	+	Missense_Mutation	SNP	C	G	G			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DMXL1	1657	broad.mit.edu	37	5	118463826	118463826	+	Intron	SNP	A	G	G			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH1	25981	broad.mit.edu	37	3	52356437	52356437	+	5'UTR	SNP	G	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH1	25981	broad.mit.edu	37	3	52416447	52416447	+	Silent	SNP	C	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH1	25981	broad.mit.edu	37	3	52416461	52416461	+	Missense_Mutation	SNP	C	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH5	1767	broad.mit.edu	37	5	13766118	13766118	+	Silent	SNP	C	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH5	1767	broad.mit.edu	37	5	13866451	13866451	+	Intron	SNP	C	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH7	56171	broad.mit.edu	37	2	196749414	196749414	+	Silent	SNP	T	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAI1	27019	broad.mit.edu	37	9	34493421	34493421	+	Intron	SNP	C	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNER	92737	broad.mit.edu	37	2	230456401	230456401	+	Silent	SNP	C	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNM2	1785	broad.mit.edu	37	19	10893611	10893612	+	Intron	INS	-	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DOCK2	1794	broad.mit.edu	37	5	169507115	169507115	+	Intron	SNP	G	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DPEP2	64174	broad.mit.edu	37	16	68026050	68026050	+	Missense_Mutation	SNP	A	G	G			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DPEP3	64180	broad.mit.edu	37	16	68014020	68014020	+	Missense_Mutation	SNP	C	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DPEP3	64180	broad.mit.edu	37	16	68014111	68014111	+	Missense_Mutation	SNP	G	T	T	rs138005567	byFrequency	TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DPP4	1803	broad.mit.edu	37	2	162875299	162875299	+	Missense_Mutation	SNP	A	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DSC1	1823	broad.mit.edu	37	18	28711632	28711632	+	Silent	SNP	C	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DSE	29940	broad.mit.edu	37	6	116720740	116720740	+	Missense_Mutation	SNP	G	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DSG1	1828	broad.mit.edu	37	18	28934526	28934526	+	Silent	SNP	A	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DTWD2	285605	broad.mit.edu	37	5	118183794	118183794	+	Silent	SNP	G	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DUSP14	11072	broad.mit.edu	37	17	35872430	35872430	+	Missense_Mutation	SNP	T	C	C			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DYNC2LI1	51626	broad.mit.edu	37	2	44021745	44021745	+	Missense_Mutation	SNP	G	C	C			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DYNLL2	140735	broad.mit.edu	37	17	56164475	56164475	+	Silent	SNP	C	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DYSF	8291	broad.mit.edu	37	2	71747373	71747373	+	Intron	SNP	T	C	C			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DYSF	8291	broad.mit.edu	37	2	71827870	71827870	+	Silent	SNP	G	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
E2F7	144455	broad.mit.edu	37	12	77423929	77423929	+	Silent	SNP	C	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EBF2	64641	broad.mit.edu	37	8	25747273	25747273	+	Missense_Mutation	SNP	G	C	C			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EFCAB6	64800	broad.mit.edu	37	22	44178304	44178304	+	Intron	SNP	G	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EFHC2	80258	broad.mit.edu	37	X	44168459	44168459	+	Intron	SNP	A	G	G			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EFR3A	23167	broad.mit.edu	37	8	133022971	133022971	+	Intron	SNP	G	C	C			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ELANE	1991	broad.mit.edu	37	19	855664	855664	+	Missense_Mutation	SNP	G	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ELMO1	9844	broad.mit.edu	37	7	36909919	36909919	+	Intron	SNP	A	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ELMO1	9844	broad.mit.edu	37	7	37262330	37262330	+	Intron	SNP	G	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ELOVL2	54898	broad.mit.edu	37	6	11005668	11005668	+	Silent	SNP	G	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ENOX1	55068	broad.mit.edu	37	13	43839584	43839584	+	Missense_Mutation	SNP	C	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ENPP3	5169	broad.mit.edu	37	6	132061443	132061444	+	Frame_Shift_Del	DEL	CC	-	-	rs149553053		TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPB49	2039	broad.mit.edu	37	8	21927301	21927301	+	Intron	SNP	C	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPHA6	285220	broad.mit.edu	37	3	96533434	96533434	+	5'UTR	SNP	G	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPHB1	2047	broad.mit.edu	37	3	134670814	134670814	+	Missense_Mutation	SNP	G	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ERBB3	2065	broad.mit.edu	37	12	56487890	56487890	+	Nonsense_Mutation	SNP	C	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ERMN	57471	broad.mit.edu	37	2	158178194	158178194	+	Silent	SNP	C	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ESYT2	57488	broad.mit.edu	37	7	158529909	158529909	+	Intron	SNP	G	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ETV3	2117	broad.mit.edu	37	1	157104092	157104092	+	Intron	SNP	G	C	C			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EVX2	344191	broad.mit.edu	37	2	176948269	176948269	+	Missense_Mutation	SNP	A	G	G			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EXO1	9156	broad.mit.edu	37	1	242030245	242030245	+	Silent	SNP	A	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EXTL2	2135	broad.mit.edu	37	1	101340074	101340074	+	Intron	SNP	G	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EYA1	2138	broad.mit.edu	37	8	72127688	72127688	+	Nonsense_Mutation	SNP	T	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM120AOS	158293	broad.mit.edu	37	9	96214681	96214681	+	Missense_Mutation	SNP	G	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM135B	51059	broad.mit.edu	37	8	139263227	139263227	+	Silent	SNP	G	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM135B	51059	broad.mit.edu	37	8	139263230	139263230	+	Missense_Mutation	SNP	C	G	G			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM181A	90050	broad.mit.edu	37	14	94394429	94394429	+	Intron	DEL	T	-	-			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM71F1	84691	broad.mit.edu	37	7	128357051	128357051	+	Missense_Mutation	SNP	G	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAP	2191	broad.mit.edu	37	2	163051221	163051221	+	Silent	SNP	G	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAT3	120114	broad.mit.edu	37	11	92100301	92100301	+	Intron	SNP	T	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAT4	79633	broad.mit.edu	37	4	126328197	126328197	+	Missense_Mutation	SNP	G	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBLIM1	54751	broad.mit.edu	37	1	16091649	16091649	+	Silent	SNP	G	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBLN2	2199	broad.mit.edu	37	3	13659811	13659811	+	Intron	SNP	G	C	C			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBXL19	54620	broad.mit.edu	37	16	30941291	30941291	+	Intron	SNP	G	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBXL7	23194	broad.mit.edu	37	5	15928376	15928376	+	Missense_Mutation	SNP	G	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBXL7	23194	broad.mit.edu	37	5	15937076	15937076	+	Silent	SNP	C	G	G			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBXO25	26260	broad.mit.edu	37	8	401310	401310	+	Missense_Mutation	SNP	C	G	G			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FCGR3A	2214	broad.mit.edu	37	1	161514811	161514811	+	Intron	SNP	G	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FCRL3	115352	broad.mit.edu	37	1	157666159	157666159	+	Intron	SNP	G	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FGD4	121512	broad.mit.edu	37	12	32764273	32764273	+	Intron	SNP	G	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FGD5	152273	broad.mit.edu	37	3	14862106	14862106	+	Missense_Mutation	SNP	C	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FGF1	2246	broad.mit.edu	37	5	141993563	141993563	+	Missense_Mutation	SNP	C	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FHOD3	80206	broad.mit.edu	37	18	34323860	34323860	+	Intron	SNP	C	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FKBP14	55033	broad.mit.edu	37	7	30065927	30065927	+	Intron	SNP	C	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLG2	388698	broad.mit.edu	37	1	152331282	152331282	+	Missense_Mutation	SNP	T	G	G			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLG	2312	broad.mit.edu	37	1	152276642	152276642	+	Missense_Mutation	SNP	C	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLG	2312	broad.mit.edu	37	1	152284648	152284648	+	Missense_Mutation	SNP	C	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLG	2312	broad.mit.edu	37	1	152284712	152284712	+	Missense_Mutation	SNP	G	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLNB	2317	broad.mit.edu	37	3	58135872	58135872	+	Silent	SNP	C	G	G			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLT1	2321	broad.mit.edu	37	13	28883126	28883126	+	Intron	SNP	G	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FMN2	56776	broad.mit.edu	37	1	240256850	240256850	+	Missense_Mutation	SNP	C	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FN1	2335	broad.mit.edu	37	2	216295517	216295518	+	Frame_Shift_Ins	INS	-	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FOLH1	2346	broad.mit.edu	37	11	49175393	49175393	+	Intron	SNP	C	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FOLH1	2346	broad.mit.edu	37	11	49227738	49227738	+	Intron	SNP	C	G	G			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FRMD4B	23150	broad.mit.edu	37	3	69236877	69236877	+	Intron	SNP	C	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FRMPD4	9758	broad.mit.edu	37	X	12712628	12712628	+	Intron	SNP	G	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FSTL5	56884	broad.mit.edu	37	4	162841740	162841740	+	Silent	SNP	G	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
G3BP1	10146	broad.mit.edu	37	5	151180170	151180171	+	Intron	DEL	TG	-	-			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABRA5	2558	broad.mit.edu	37	15	27193064	27193064	+	Intron	SNP	C	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABRQ	55879	broad.mit.edu	37	X	151818123	151818123	+	Intron	SNP	G	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABRR1	2569	broad.mit.edu	37	6	89895196	89895196	+	Intron	SNP	C	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GALC	2581	broad.mit.edu	37	14	88406293	88406293	+	Nonsense_Mutation	SNP	C	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GALNT13	114805	broad.mit.edu	37	2	155157891	155157891	+	Intron	SNP	C	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GALNTL4	374378	broad.mit.edu	37	11	11314662	11314662	+	Missense_Mutation	SNP	G	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GALNTL6	442117	broad.mit.edu	37	4	173942916	173942916	+	Intron	DEL	G	-	-			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GCM1	8521	broad.mit.edu	37	6	52998849	52998849	+	Intron	SNP	G	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GDAP1L1	78997	broad.mit.edu	37	20	42907638	42907638	+	Missense_Mutation	SNP	C	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GFOD2	81577	broad.mit.edu	37	16	67709851	67709851	+	Missense_Mutation	SNP	T	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GHDC	84514	broad.mit.edu	37	17	40345091	40345091	+	Intron	SNP	C	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GHRHR	2692	broad.mit.edu	37	7	31013715	31013715	+	Nonsense_Mutation	SNP	C	G	G			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GJA5	2702	broad.mit.edu	37	1	147231223	147231223	+	Missense_Mutation	SNP	C	G	G			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLDC	2731	broad.mit.edu	37	9	6602161	6602161	+	Missense_Mutation	SNP	C	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLI3	2737	broad.mit.edu	37	7	42006172	42006172	+	Silent	SNP	G	C	C			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLRA4	441509	broad.mit.edu	37	X	102974190	102974190	+	Missense_Mutation	SNP	G	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLT25D2	23127	broad.mit.edu	37	1	183920145	183920145	+	Nonsense_Mutation	SNP	C	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPC2	221914	broad.mit.edu	37	7	99768065	99768065	+	Missense_Mutation	SNP	C	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPC5	2262	broad.mit.edu	37	13	92101267	92101267	+	Intron	SNP	T	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPC6	10082	broad.mit.edu	37	13	94482724	94482724	+	Missense_Mutation	SNP	C	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPHN	10243	broad.mit.edu	37	14	67646459	67646459	+	Intron	SNP	C	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPM6A	2823	broad.mit.edu	37	4	176923438	176923438	+	Intron	SNP	A	G	G			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR112	139378	broad.mit.edu	37	X	135438316	135438316	+	Silent	SNP	C	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRB10	2887	broad.mit.edu	37	7	50674011	50674011	+	Intron	SNP	C	G	G			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GREB1	9687	broad.mit.edu	37	2	11780633	11780633	+	3'UTR	SNP	G	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRIK1	2897	broad.mit.edu	37	21	30910011	30910011	+	Intron	SNP	C	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRIN3B	116444	broad.mit.edu	37	19	1004961	1004961	+	Silent	SNP	G	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRM1	2911	broad.mit.edu	37	6	146720526	146720526	+	Missense_Mutation	SNP	C	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GSX1	219409	broad.mit.edu	37	13	28368064	28368064	+	Silent	SNP	G	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GUCY1A2	2977	broad.mit.edu	37	11	106697918	106697918	+	Intron	SNP	A	G	G			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GZMH	2999	broad.mit.edu	37	14	25077018	25077018	+	Intron	SNP	G	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
H2BFWT	158983	broad.mit.edu	37	X	103267410	103267410	+	Intron	SNP	G	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HAO1	54363	broad.mit.edu	37	20	7886991	7886991	+	Intron	SNP	G	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HCFC1	3054	broad.mit.edu	37	X	153225216	153225216	+	Intron	DEL	C	-	-			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HCK	3055	broad.mit.edu	37	20	30686834	30686834	+	Missense_Mutation	SNP	C	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HCN1	348980	broad.mit.edu	37	5	45262467	45262467	+	Silent	SNP	C	T	T	rs143994644	by1000genomes	TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HCN1	348980	broad.mit.edu	37	5	45262537	45262537	+	Missense_Mutation	SNP	G	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HDAC4	9759	broad.mit.edu	37	2	240016658	240016658	+	Intron	SNP	G	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HDAC9	9734	broad.mit.edu	37	7	18868729	18868729	+	Intron	SNP	C	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HDAC9	9734	broad.mit.edu	37	7	18875335	18875336	+	Intron	DNP	CA	AT	AT			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HDAC9	9734	broad.mit.edu	37	7	18975281	18975281	+	Intron	SNP	C	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HDLBP	3069	broad.mit.edu	37	2	242195580	242195580	+	Intron	SNP	C	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HEATR1	55127	broad.mit.edu	37	1	236760239	236760239	+	Missense_Mutation	SNP	C	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HECW1	23072	broad.mit.edu	37	7	43351607	43351607	+	Silent	SNP	G	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HFM1	164045	broad.mit.edu	37	1	91817069	91817069	+	Intron	SNP	A	G	G			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HIF1A	3091	broad.mit.edu	37	14	62207964	62207964	+	Intron	SNP	G	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HIST1H1E	3008	broad.mit.edu	37	6	26156692	26156692	+	Missense_Mutation	SNP	G	C	C			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HIVEP3	59269	broad.mit.edu	37	1	42046279	42046279	+	Missense_Mutation	SNP	C	G	G			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HNF4G	3174	broad.mit.edu	37	8	76472782	76472782	+	Intron	SNP	G	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HOOK3	84376	broad.mit.edu	37	8	42863026	42863026	+	Missense_Mutation	SNP	G	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HOXA5	3202	broad.mit.edu	37	7	27182769	27182769	+	Missense_Mutation	SNP	G	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HSP90AB4P	664618	broad.mit.edu	37	15	58984371	58984371	+	Splice_Site	SNP	C	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HSPH1	10808	broad.mit.edu	37	13	31725161	31725161	+	Missense_Mutation	SNP	C	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HTR2B	3357	broad.mit.edu	37	2	231973592	231973592	+	Missense_Mutation	SNP	A	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HTR3C	170572	broad.mit.edu	37	3	183770810	183770810	+	5'Flank	SNP	T	C	C			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HUWE1	10075	broad.mit.edu	37	X	53563173	53563173	+	Missense_Mutation	SNP	C	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IFNGR1	3459	broad.mit.edu	37	6	137519417	137519417	+	Silent	SNP	G	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IGF2BP3	10643	broad.mit.edu	37	7	23507942	23507942	+	Intron	SNP	A	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IGF2R	3482	broad.mit.edu	37	6	160514939	160514939	+	Intron	SNP	G	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IGF2R	3482	broad.mit.edu	37	6	160517307	160517307	+	Intron	SNP	G	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IGFL1	374918	broad.mit.edu	37	19	46733709	46733709	+	Missense_Mutation	SNP	C	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IGFN1	91156	broad.mit.edu	37	1	201185815	201185815	+	Missense_Mutation	SNP	C	T	T	rs35669472		TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL17RE	132014	broad.mit.edu	37	3	9956381	9956381	+	Missense_Mutation	SNP	G	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ILF3	3609	broad.mit.edu	37	19	10800252	10800252	+	3'UTR	SNP	C	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
INSC	387755	broad.mit.edu	37	11	15199882	15199882	+	Silent	SNP	T	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
INSRR	3645	broad.mit.edu	37	1	156811945	156811945	+	Missense_Mutation	SNP	C	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
INTS1	26173	broad.mit.edu	37	7	1539273	1539273	+	Intron	SNP	G	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IPW	3653	broad.mit.edu	37	15	25415847	25415847	+	Intron	SNP	C	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IRS2	8660	broad.mit.edu	37	13	110438032	110438032	+	Silent	SNP	G	C	C			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ISLR2	57611	broad.mit.edu	37	15	74426316	74426316	+	Missense_Mutation	SNP	C	G	G			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGA2	3673	broad.mit.edu	37	5	52361674	52361674	+	Missense_Mutation	SNP	A	C	C			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGA6	3655	broad.mit.edu	37	2	173334179	173334179	+	Intron	SNP	G	C	C			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITIH5	80760	broad.mit.edu	37	10	7605410	7605410	+	Intron	SNP	A	G	G			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITPR2	3709	broad.mit.edu	37	12	26636704	26636704	+	Missense_Mutation	SNP	T	C	C			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITPR2	3709	broad.mit.edu	37	12	26809337	26809337	+	Nonsense_Mutation	SNP	A	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITPRIPL1	150771	broad.mit.edu	37	2	96991493	96991493	+	5'UTR	SNP	G	C	C			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IVD	3712	broad.mit.edu	37	15	40707610	40707610	+	Missense_Mutation	SNP	G	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNC4	3749	broad.mit.edu	37	1	110765692	110765692	+	Missense_Mutation	SNP	G	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNH1	3756	broad.mit.edu	37	1	211032709	211032709	+	Intron	SNP	C	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNH2	3757	broad.mit.edu	37	7	150647133	150647133	+	Intron	SNP	G	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNH7	90134	broad.mit.edu	37	2	163693092	163693092	+	Missense_Mutation	SNP	C	G	G			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNJ12	3768	broad.mit.edu	37	17	21319542	21319542	+	Silent	SNP	G	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNQ1	3784	broad.mit.edu	37	11	2591854	2591855	+	Intron	DNP	GC	AG	AG			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KDM4B	23030	broad.mit.edu	37	19	5032934	5032934	+	Silent	SNP	C	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KDM5A	5927	broad.mit.edu	37	12	427541	427541	+	Missense_Mutation	SNP	C	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KDM6A	7403	broad.mit.edu	37	X	44928907	44928907	+	Silent	SNP	C	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KEAP1	9817	broad.mit.edu	37	19	10600330	10600330	+	Missense_Mutation	SNP	C	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KEL	3792	broad.mit.edu	37	7	142651190	142651190	+	Intron	SNP	C	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA0317	9870	broad.mit.edu	37	14	75143478	75143478	+	Intron	SNP	T	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA0562	9731	broad.mit.edu	37	1	3747510	3747510	+	Intron	SNP	C	G	G			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA0564	23078	broad.mit.edu	37	13	42263653	42263653	+	Intron	SNP	T	C	C			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1109	84162	broad.mit.edu	37	4	123095682	123095682	+	Intron	SNP	C	G	G			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1109	84162	broad.mit.edu	37	4	123255688	123255688	+	Missense_Mutation	SNP	C	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1211	57482	broad.mit.edu	37	4	57173832	57173832	+	Missense_Mutation	SNP	G	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1409	57578	broad.mit.edu	37	14	93962804	93962804	+	Missense_Mutation	SNP	G	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1751	85452	broad.mit.edu	37	1	1890437	1890437	+	Intron	SNP	G	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA2026	158358	broad.mit.edu	37	9	5968771	5968771	+	Missense_Mutation	SNP	C	G	G			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF13A	63971	broad.mit.edu	37	6	17954134	17954134	+	Intron	SNP	C	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF15	56992	broad.mit.edu	37	3	44835823	44835823	+	Missense_Mutation	SNP	G	C	C			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF26B	55083	broad.mit.edu	37	1	245848894	245848895	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF2B	84643	broad.mit.edu	37	17	51900706	51900706	+	Silent	SNP	G	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIFAP3	22920	broad.mit.edu	37	1	169951077	169951077	+	Intron	SNP	T	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIR2DL3	3804	broad.mit.edu	37	19	55263328	55263328	+	Intron	SNP	G	C	C	rs145361319	by1000genomes	TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KITLG	4254	broad.mit.edu	37	12	88900187	88900187	+	Intron	SNP	A	G	G			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLK10	5655	broad.mit.edu	37	19	51522352	51522352	+	Missense_Mutation	SNP	G	C	C			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLK13	26085	broad.mit.edu	37	19	51561823	51561823	+	Missense_Mutation	SNP	G	C	C			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRT25	147183	broad.mit.edu	37	17	38906520	38906520	+	Intron	SNP	A	G	G			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRTAP10-4	386672	broad.mit.edu	37	21	45994266	45994266	+	Missense_Mutation	SNP	C	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRTAP13-2	337959	broad.mit.edu	37	21	31744692	31744692	+	5'Flank	SNP	C	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRTAP5-1	387264	broad.mit.edu	37	11	1605902	1605902	+	Missense_Mutation	SNP	G	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KTN1	3895	broad.mit.edu	37	14	56116524	56116526	+	In_Frame_Del	DEL	AAG	-	-			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KTN1	3895	broad.mit.edu	37	14	56126531	56126531	+	Intron	SNP	A	G	G			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KYNU	8942	broad.mit.edu	37	2	143743548	143743548	+	Missense_Mutation	SNP	G	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
L3MBTL3	84456	broad.mit.edu	37	6	130381144	130381144	+	Intron	SNP	G	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMA1	284217	broad.mit.edu	37	18	6973142	6973142	+	Missense_Mutation	SNP	T	C	C			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMA2	3908	broad.mit.edu	37	6	129465092	129465092	+	Missense_Mutation	SNP	C	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMA2	3908	broad.mit.edu	37	6	129649345	129649345	+	Intron	SNP	G	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMA4	3910	broad.mit.edu	37	6	112499347	112499347	+	Missense_Mutation	SNP	G	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LEFTY1	10637	broad.mit.edu	37	1	226075725	226075725	+	Silent	SNP	G	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LGALS13	29124	broad.mit.edu	37	19	40093182	40093182	+	5'UTR	SNP	C	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LGI2	55203	broad.mit.edu	37	4	25014044	25014044	+	Missense_Mutation	SNP	C	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LHCGR	3973	broad.mit.edu	37	2	48935956	48935956	+	Intron	SNP	C	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LILRB1	10859	broad.mit.edu	37	19	55144826	55144826	+	Intron	SNP	C	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LILRB4	11006	broad.mit.edu	37	19	55176017	55176017	+	Intron	SNP	G	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LIMCH1	22998	broad.mit.edu	37	4	41684566	41684566	+	Intron	SNP	A	G	G			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LIMS2	55679	broad.mit.edu	37	2	128415049	128415049	+	Silent	SNP	C	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LIPC	3990	broad.mit.edu	37	15	58724324	58724324	+	Intron	SNP	G	C	C			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LMBRD1	55788	broad.mit.edu	37	6	70386117	70386117	+	Nonsense_Mutation	SNP	G	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LMLN	89782	broad.mit.edu	37	3	197717396	197717396	+	Intron	SNP	C	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LMNB2	84823	broad.mit.edu	37	19	2434013	2434013	+	Silent	SNP	C	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LMOD1	25802	broad.mit.edu	37	1	201869186	201869186	+	Missense_Mutation	SNP	C	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC440173	440173	broad.mit.edu	37	9	89627429	89627429	+	Intron	SNP	C	G	G			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC646214	646214	broad.mit.edu	37	15	21936908	21936909	+	RNA	DNP	CC	GG	GG			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC646214	646214	broad.mit.edu	37	15	21937495	21937495	+	RNA	SNP	C	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC96610	96610	broad.mit.edu	37	22	22730931	22730931	+	Intron	SNP	T	C	C			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC96610	96610	broad.mit.edu	37	22	23003902	23003902	+	Intron	SNP	G	T	T	rs80241812	by1000genomes	TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LPCAT2	54947	broad.mit.edu	37	16	55584841	55584841	+	Intron	SNP	A	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRAT	9227	broad.mit.edu	37	4	155666158	155666160	+	Intron	DEL	CTT	-	-	rs66898606		TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRBA	987	broad.mit.edu	37	4	151835258	151835258	+	Intron	SNP	G	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP1B	53353	broad.mit.edu	37	2	141093288	141093288	+	Silent	SNP	C	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP1B	53353	broad.mit.edu	37	2	141128881	141128881	+	Intron	SNP	G	C	C			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP1	4035	broad.mit.edu	37	12	57569264	57569264	+	Missense_Mutation	SNP	G	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC10	376132	broad.mit.edu	37	12	70004114	70004114	+	Missense_Mutation	SNP	G	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC32	2615	broad.mit.edu	37	11	76372429	76372429	+	Missense_Mutation	SNP	C	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC37B	114659	broad.mit.edu	37	17	30376930	30376931	+	Intron	DNP	GG	TT	TT			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC43	254050	broad.mit.edu	37	12	122677642	122677642	+	Intron	SNP	G	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRK1	79705	broad.mit.edu	37	15	101597147	101597147	+	Silent	SNP	C	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRSAM1	90678	broad.mit.edu	37	9	130247911	130247911	+	Intron	SNP	C	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LYNX1	66004	broad.mit.edu	37	8	143846267	143846267	+	Intron	SNP	A	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LYZL1	84569	broad.mit.edu	37	10	29599112	29599112	+	Missense_Mutation	SNP	C	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAGEC3	139081	broad.mit.edu	37	X	140969218	140969218	+	Missense_Mutation	SNP	A	G	G			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAGOH	4116	broad.mit.edu	37	1	53694647	53694647	+	Intron	SNP	C	G	G			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MANEA	79694	broad.mit.edu	37	6	96034180	96034180	+	Intron	SNP	C	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAP2K3	5606	broad.mit.edu	37	17	21215323	21215323	+	Intron	SNP	G	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAP3K7	6885	broad.mit.edu	37	6	91228301	91228301	+	Intron	SNP	T	C	C			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAP4K1	11184	broad.mit.edu	37	19	39090638	39090638	+	Intron	SNP	G	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAP7D3	79649	broad.mit.edu	37	X	135309404	135309404	+	Intron	SNP	C	G	G			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MARCH1	55016	broad.mit.edu	37	4	165110177	165110177	+	Intron	SNP	G	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MARCH3	115123	broad.mit.edu	37	5	126250695	126250695	+	Missense_Mutation	SNP	G	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MARCO	8685	broad.mit.edu	37	2	119739028	119739028	+	Missense_Mutation	SNP	G	C	C			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MARK2	2011	broad.mit.edu	37	11	63666005	63666005	+	Intron	SNP	G	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MASP1	5648	broad.mit.edu	37	3	186947725	186947725	+	Intron	SNP	G	C	C			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MASP1	5648	broad.mit.edu	37	3	186974520	186974520	+	Missense_Mutation	SNP	G	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAT1A	4143	broad.mit.edu	37	10	82039923	82039923	+	Intron	SNP	G	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MBD1	4152	broad.mit.edu	37	18	47802296	47802296	+	Missense_Mutation	SNP	C	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MCHR2	84539	broad.mit.edu	37	6	100390744	100390744	+	Intron	SNP	A	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MCM7	4176	broad.mit.edu	37	7	99694902	99694902	+	Intron	SNP	C	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MDGA2	161357	broad.mit.edu	37	14	47342909	47342909	+	Intron	SNP	G	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MED13	9969	broad.mit.edu	37	17	60112780	60112780	+	Intron	SNP	C	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MEGF6	1953	broad.mit.edu	37	1	3519121	3519121	+	Missense_Mutation	SNP	G	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MEIS2	4212	broad.mit.edu	37	15	37386705	37386705	+	Intron	SNP	G	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MELK	9833	broad.mit.edu	37	9	36657154	36657154	+	Intron	SNP	T	C	C			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MEOX2	4223	broad.mit.edu	37	7	15652076	15652076	+	Missense_Mutation	SNP	C	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MIA2	117153	broad.mit.edu	37	14	39717036	39717036	+	Missense_Mutation	SNP	G	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MIA3	375056	broad.mit.edu	37	1	222801057	222801057	+	Missense_Mutation	SNP	G	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MIA3	375056	broad.mit.edu	37	1	222833533	222833533	+	Missense_Mutation	SNP	A	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MICAL2	9645	broad.mit.edu	37	11	12247751	12247751	+	Silent	SNP	G	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MICAL3	57553	broad.mit.edu	37	22	18363985	18363985	+	Intron	SNP	G	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MIER2	54531	broad.mit.edu	37	19	326348	326348	+	Intron	SNP	G	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MINA	84864	broad.mit.edu	37	3	97686195	97686195	+	Silent	SNP	G	A	A	rs143209673	byFrequency	TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MIR1185-1	100302157	broad.mit.edu	37	14	101509384	101509384	+	RNA	SNP	T	C	C			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MIR485	574436	broad.mit.edu	37	14	101521810	101521810	+	RNA	SNP	G	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MIR510	574515	broad.mit.edu	37	X	146353884	146353884	+	RNA	SNP	A	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MIR622	693207	broad.mit.edu	37	13	90882783	90882783	+	5'Flank	SNP	G	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MKNK1	8569	broad.mit.edu	37	1	47024441	47024441	+	Missense_Mutation	SNP	C	G	G			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MLL3	58508	broad.mit.edu	37	7	151846285	151846285	+	Intron	SNP	C	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MLLT3	4300	broad.mit.edu	37	9	20414343	20414343	+	Silent	SNP	A	G	G			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MMEL1	79258	broad.mit.edu	37	1	2530196	2530196	+	Missense_Mutation	SNP	G	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MMEL1	79258	broad.mit.edu	37	1	2538455	2538455	+	Missense_Mutation	SNP	C	T	T	rs148947796		TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MORF4	10934	broad.mit.edu	37	4	174537540	174537540	+	Missense_Mutation	SNP	G	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MPP6	51678	broad.mit.edu	37	7	24705690	24705690	+	Missense_Mutation	SNP	C	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MRC2	9902	broad.mit.edu	37	17	60753982	60753982	+	Intron	SNP	A	G	G			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MS4A4A	51338	broad.mit.edu	37	11	60059639	60059639	+	Intron	SNP	T	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MSH5	4439	broad.mit.edu	37	6	31727102	31727102	+	Intron	SNP	G	C	C			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTL5	9633	broad.mit.edu	37	11	68509921	68509921	+	Intron	SNP	C	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTMR4	9110	broad.mit.edu	37	17	56581269	56581269	+	Intron	SNP	C	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTMR7	9108	broad.mit.edu	37	8	17169218	17169219	+	Intron	INS	-	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC16	94025	broad.mit.edu	37	19	8962041	8962041	+	Intron	SNP	C	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC5B	727897	broad.mit.edu	37	11	1217678	1217678	+	Intron	SNP	C	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC7	4589	broad.mit.edu	37	4	71347026	71347026	+	Missense_Mutation	SNP	A	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH1	4619	broad.mit.edu	37	17	10398275	10398275	+	Silent	SNP	C	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH1	4619	broad.mit.edu	37	17	10409210	10409210	+	Missense_Mutation	SNP	C	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH7B	57644	broad.mit.edu	37	20	33582124	33582124	+	Missense_Mutation	SNP	G	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH7	4625	broad.mit.edu	37	14	23885271	23885271	+	Missense_Mutation	SNP	G	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYLIP	29116	broad.mit.edu	37	6	16130937	16130937	+	Missense_Mutation	SNP	G	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO18A	399687	broad.mit.edu	37	17	27493223	27493223	+	Missense_Mutation	SNP	C	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO3B	140469	broad.mit.edu	37	2	171508025	171508025	+	Intron	SNP	C	G	G			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO5B	4645	broad.mit.edu	37	18	47511002	47511002	+	Intron	SNP	G	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYOF	26509	broad.mit.edu	37	10	95116584	95116584	+	Nonsense_Mutation	SNP	G	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYOF	26509	broad.mit.edu	37	10	95147444	95147444	+	Intron	SNP	G	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYRIP	25924	broad.mit.edu	37	3	40251629	40251629	+	Intron	SNP	T	C	C			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYT1L	23040	broad.mit.edu	37	2	1920772	1920772	+	Intron	SNP	G	C	C			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
N4BP3	23138	broad.mit.edu	37	5	177546877	177546877	+	Missense_Mutation	SNP	G	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NAALADL1	10004	broad.mit.edu	37	11	64815849	64815849	+	Missense_Mutation	SNP	G	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NALCN	259232	broad.mit.edu	37	13	101728270	101728270	+	Missense_Mutation	SNP	C	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NAV2	89797	broad.mit.edu	37	11	20073025	20073025	+	Intron	SNP	C	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NAV3	89795	broad.mit.edu	37	12	78574754	78574754	+	Missense_Mutation	SNP	C	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCALD	83988	broad.mit.edu	37	8	102884714	102884714	+	Intron	SNP	T	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCAM1	4684	broad.mit.edu	37	11	113103638	113103638	+	Intron	SNP	G	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCAPD3	23310	broad.mit.edu	37	11	134080413	134080413	+	Intron	SNP	C	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCRNA00164	554226	broad.mit.edu	37	2	133014513	133014513	+	Intron	SNP	G	A	A	rs77333908	by1000genomes	TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NDOR1	27158	broad.mit.edu	37	9	140108925	140108925	+	Intron	SNP	G	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NDST4	64579	broad.mit.edu	37	4	115997820	115997821	+	Missense_Mutation	DNP	TG	CT	CT			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NEK10	152110	broad.mit.edu	37	3	27173292	27173292	+	Intron	SNP	G	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NEK1	4750	broad.mit.edu	37	4	170347354	170347354	+	Missense_Mutation	SNP	C	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NEK4	6787	broad.mit.edu	37	3	52778362	52778362	+	Intron	SNP	C	G	G			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NF1P1	440225	broad.mit.edu	37	15	21134147	21134147	+	Intron	SNP	G	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NFIB	4781	broad.mit.edu	37	9	14146719	14146719	+	Silent	SNP	A	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NFKB1	4790	broad.mit.edu	37	4	103504055	103504055	+	Nonsense_Mutation	SNP	G	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NFRKB	4798	broad.mit.edu	37	11	129751624	129751624	+	Missense_Mutation	SNP	C	G	G			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NIPBL	25836	broad.mit.edu	37	5	37057471	37057471	+	Intron	SNP	C	G	G			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NKAIN2	154215	broad.mit.edu	37	6	124979278	124979278	+	Intron	SNP	A	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NKAIN3	286183	broad.mit.edu	37	8	63768742	63768742	+	Intron	SNP	A	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NKD1	85407	broad.mit.edu	37	16	50666382	50666382	+	Intron	SNP	G	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLRP14	338323	broad.mit.edu	37	11	7059877	7059877	+	Silent	SNP	G	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLRP14	338323	broad.mit.edu	37	11	7083652	7083652	+	Missense_Mutation	SNP	G	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLRP3	114548	broad.mit.edu	37	1	247587935	247587935	+	Missense_Mutation	SNP	G	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NOP56	10528	broad.mit.edu	37	20	2636664	2636664	+	Missense_Mutation	SNP	G	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NOXO1	124056	broad.mit.edu	37	16	2030675	2030675	+	Missense_Mutation	SNP	C	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NPFFR2	10886	broad.mit.edu	37	4	72897945	72897945	+	Intron	SNP	G	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NPHP3	27031	broad.mit.edu	37	3	132423161	132423161	+	Missense_Mutation	SNP	C	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NPSR1	387129	broad.mit.edu	37	7	34818232	34818232	+	Intron	SNP	A	G	G			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NPTX2	4885	broad.mit.edu	37	7	98254090	98254090	+	Intron	SNP	C	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NR1I2	8856	broad.mit.edu	37	3	119534135	119534135	+	Intron	SNP	G	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NR2C2	7182	broad.mit.edu	37	3	15065576	15065576	+	Intron	SNP	C	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRXN1	9378	broad.mit.edu	37	2	50280681	50280681	+	Missense_Mutation	SNP	C	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRXN1	9378	broad.mit.edu	37	2	50463964	50463964	+	Missense_Mutation	SNP	C	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRXN2	9379	broad.mit.edu	37	11	64415750	64415750	+	Nonsense_Mutation	SNP	C	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NSMAF	8439	broad.mit.edu	37	8	59512715	59512715	+	Intron	SNP	C	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NT5C3	51251	broad.mit.edu	37	7	33055308	33055308	+	Silent	SNP	G	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NTNG1	22854	broad.mit.edu	37	1	107691419	107691420	+	Missense_Mutation	DNP	GG	TT	TT	rs147345058	byFrequency	TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NTNG2	84628	broad.mit.edu	37	9	135114645	135114645	+	Missense_Mutation	SNP	G	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NUAK1	9891	broad.mit.edu	37	12	106466391	106466391	+	Intron	SNP	C	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NUP210L	91181	broad.mit.edu	37	1	154027277	154027277	+	Missense_Mutation	SNP	T	C	C			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NUP93	9688	broad.mit.edu	37	16	56855440	56855440	+	Missense_Mutation	SNP	G	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NXF2B	728343	broad.mit.edu	37	X	101623603	101623603	+	Intron	SNP	G	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NXF2B	728343	broad.mit.edu	37	X	101623606	101623606	+	Intron	SNP	G	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NXF3	56000	broad.mit.edu	37	X	102343880	102343880	+	Intron	SNP	C	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NXPH3	11248	broad.mit.edu	37	17	47656735	47656735	+	3'UTR	SNP	C	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ODF2	4957	broad.mit.edu	37	9	131258434	131258434	+	Intron	SNP	G	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ODZ1	10178	broad.mit.edu	37	X	123526090	123526090	+	Missense_Mutation	SNP	C	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ODZ4	26011	broad.mit.edu	37	11	78431322	78431322	+	Intron	SNP	C	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OGDHL	55753	broad.mit.edu	37	10	50960566	50960566	+	Intron	SNP	G	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OLAH	55301	broad.mit.edu	37	10	15103815	15103815	+	Missense_Mutation	SNP	C	G	G			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OPLAH	26873	broad.mit.edu	37	8	145108315	145108315	+	Intron	SNP	C	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR10H4	126541	broad.mit.edu	37	19	16059805	16059805	+	5'Flank	SNP	A	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR10H5	284433	broad.mit.edu	37	19	15905665	15905665	+	Silent	SNP	G	T	T	rs138375774		TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR10J1	26476	broad.mit.edu	37	1	159409741	159409741	+	Missense_Mutation	SNP	C	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR10Q1	219960	broad.mit.edu	37	11	57996273	57996273	+	Silent	SNP	A	G	G			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR12D3	81797	broad.mit.edu	37	6	29342926	29342926	+	Missense_Mutation	SNP	C	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR13C9	286362	broad.mit.edu	37	9	107379868	107379868	+	Silent	SNP	G	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR1C1	26188	broad.mit.edu	37	1	247921054	247921054	+	Nonsense_Mutation	SNP	C	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR1N1	138883	broad.mit.edu	37	9	125288811	125288811	+	Silent	SNP	G	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2D3	120775	broad.mit.edu	37	11	6943214	6943214	+	Missense_Mutation	SNP	C	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2F1	26211	broad.mit.edu	37	7	143657299	143657299	+	Missense_Mutation	SNP	C	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2F2	135948	broad.mit.edu	37	7	143632996	143632997	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2L13	284521	broad.mit.edu	37	1	248138210	248138211	+	Intron	DNP	CG	TT	TT			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2M7	391196	broad.mit.edu	37	1	248487892	248487892	+	5'Flank	SNP	G	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2T3	343173	broad.mit.edu	37	1	248636689	248636689	+	Missense_Mutation	SNP	C	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4A15	81328	broad.mit.edu	37	11	55135422	55135422	+	Missense_Mutation	SNP	C	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4K17	390436	broad.mit.edu	37	14	20585717	20585717	+	Missense_Mutation	SNP	C	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4M1	441670	broad.mit.edu	37	14	20248812	20248812	+	Missense_Mutation	SNP	G	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4X1	390113	broad.mit.edu	37	11	48286048	48286048	+	Silent	SNP	G	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR51A4	401666	broad.mit.edu	37	11	4967877	4967877	+	Missense_Mutation	SNP	A	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR51G2	81282	broad.mit.edu	37	11	4936466	4936466	+	Missense_Mutation	SNP	T	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR52B6	340980	broad.mit.edu	37	11	5602527	5602527	+	Missense_Mutation	SNP	C	A	A	rs114791744	by1000genomes	TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR52E4	390081	broad.mit.edu	37	11	5906247	5906247	+	Missense_Mutation	SNP	G	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR5D16	390144	broad.mit.edu	37	11	55607017	55607017	+	Missense_Mutation	SNP	C	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR5T3	390154	broad.mit.edu	37	11	56019896	56019896	+	Missense_Mutation	SNP	G	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR7E5P	219445	broad.mit.edu	37	11	55747526	55747526	+	5'UTR	SNP	T	G	G			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR8J1	219477	broad.mit.edu	37	11	56128532	56128532	+	Silent	SNP	T	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR8K5	219453	broad.mit.edu	37	11	55927735	55927735	+	Missense_Mutation	SNP	C	G	G			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR9A2	135924	broad.mit.edu	37	7	142723355	142723355	+	Missense_Mutation	SNP	G	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR9K2	441639	broad.mit.edu	37	12	55523903	55523903	+	Silent	SNP	C	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OSBPL7	114881	broad.mit.edu	37	17	45886173	45886173	+	Intron	SNP	T	C	C			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OTUD7A	161725	broad.mit.edu	37	15	31796019	31796019	+	Missense_Mutation	SNP	A	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OVCH1	341350	broad.mit.edu	37	12	29614942	29614942	+	Splice_Site	SNP	C	G	G			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PABPC5	140886	broad.mit.edu	37	X	90691644	90691644	+	Missense_Mutation	SNP	A	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PACS2	23241	broad.mit.edu	37	14	105847241	105847241	+	Intron	SNP	G	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PADI1	29943	broad.mit.edu	37	1	17567297	17567297	+	Intron	SNP	G	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAK7	57144	broad.mit.edu	37	20	9524839	9524839	+	Intron	SNP	T	G	G			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAPPA2	60676	broad.mit.edu	37	1	176585881	176585881	+	Intron	SNP	C	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PARL	55486	broad.mit.edu	37	3	183547410	183547410	+	Silent	SNP	G	A	A	rs17849792		TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PARVG	64098	broad.mit.edu	37	22	44587910	44587910	+	Intron	SNP	C	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PASK	23178	broad.mit.edu	37	2	242065726	242065726	+	Silent	SNP	G	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAX3	5077	broad.mit.edu	37	2	223084911	223084911	+	Frame_Shift_Del	DEL	G	-	-	rs45607236		TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAX4	5078	broad.mit.edu	37	7	127255536	127255536	+	Silent	SNP	G	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAXIP1	22976	broad.mit.edu	37	7	154745873	154745873	+	Intron	SNP	A	G	G			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH10	57575	broad.mit.edu	37	4	134072045	134072045	+	Silent	SNP	C	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH11X	27328	broad.mit.edu	37	X	91368899	91368899	+	Intron	SNP	A	G	G			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH15	65217	broad.mit.edu	37	10	55570270	55570271	+	Intron	INS	-	C	C			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH15	65217	broad.mit.edu	37	10	56077208	56077208	+	Intron	SNP	G	C	C			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH8	5100	broad.mit.edu	37	13	53418996	53418996	+	Missense_Mutation	SNP	C	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH8	5100	broad.mit.edu	37	13	53420356	53420356	+	Missense_Mutation	SNP	A	C	C			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH8	5100	broad.mit.edu	37	13	53422643	53422643	+	5'UTR	SNP	A	G	G			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH9	5101	broad.mit.edu	37	13	67802318	67802318	+	Silent	SNP	A	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHB10	56126	broad.mit.edu	37	5	140573673	140573673	+	Silent	SNP	C	G	G			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHB1	29930	broad.mit.edu	37	5	140430991	140430991	+	5'UTR	SNP	C	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHGA5	56110	broad.mit.edu	37	5	140746246	140746246	+	Missense_Mutation	SNP	G	C	C			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHGB2	56103	broad.mit.edu	37	5	140740006	140740006	+	Missense_Mutation	SNP	T	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCSK5	5125	broad.mit.edu	37	9	78506309	78506309	+	Intron	SNP	C	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDCD1LG2	80380	broad.mit.edu	37	9	5522387	5522387	+	Intron	SNP	T	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE4A	5141	broad.mit.edu	37	19	10577403	10577403	+	Intron	SNP	C	G	G			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE4DIP	9659	broad.mit.edu	37	1	144865993	144865993	+	Intron	SNP	C	G	G			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDGFRA	5156	broad.mit.edu	37	4	54362072	54362072	+	Intron	SNP	G	C	C			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDZD7	79955	broad.mit.edu	37	10	102783878	102783878	+	Intron	SNP	G	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PEX1	5189	broad.mit.edu	37	7	92148183	92148183	+	Intron	SNP	C	A	A	rs144544832	by1000genomes	TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PEX2	5828	broad.mit.edu	37	8	77896354	77896354	+	Missense_Mutation	SNP	C	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PFKFB4	5210	broad.mit.edu	37	3	48563078	48563078	+	Missense_Mutation	SNP	C	T	T	rs149503701	by1000genomes	TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PGM3	5238	broad.mit.edu	37	6	83881763	83881763	+	Missense_Mutation	SNP	T	C	C			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PHACTR3	116154	broad.mit.edu	37	20	58318079	58318079	+	Intron	SNP	G	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PHF12	57649	broad.mit.edu	37	17	27277024	27277024	+	Intron	SNP	T	G	G			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PICALM	8301	broad.mit.edu	37	11	85722153	85722153	+	Nonsense_Mutation	SNP	G	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PICALM	8301	broad.mit.edu	37	11	85722156	85722156	+	Missense_Mutation	SNP	T	C	C			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIP4K2A	5305	broad.mit.edu	37	10	22828882	22828882	+	Intron	SNP	C	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIP4K2B	8396	broad.mit.edu	37	17	36936677	36936677	+	Intron	SNP	T	C	C			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PKHD1L1	93035	broad.mit.edu	37	8	110445490	110445490	+	Intron	SNP	G	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PKHD1	5314	broad.mit.edu	37	6	51890939	51890939	+	Missense_Mutation	SNP	C	G	G			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PKM2	5315	broad.mit.edu	37	15	72502878	72502878	+	Intron	SNP	C	G	G			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PKN3	29941	broad.mit.edu	37	9	131477031	131477031	+	Intron	SNP	G	C	C			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLB1	151056	broad.mit.edu	37	2	28855876	28855876	+	Silent	SNP	C	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLCB1	23236	broad.mit.edu	37	20	8665849	8665849	+	Intron	SNP	T	C	C			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLCB4	5332	broad.mit.edu	37	20	9346313	9346313	+	Intron	SNP	C	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLCL2	23228	broad.mit.edu	37	3	17052138	17052138	+	Missense_Mutation	SNP	C	G	G			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLCZ1	89869	broad.mit.edu	37	12	18837256	18837256	+	Intron	SNP	T	C	C			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLGLA	285189	broad.mit.edu	37	2	107003830	107003830	+	Intron	SNP	A	G	G			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLXDC1	57125	broad.mit.edu	37	17	37226180	37226180	+	Missense_Mutation	SNP	C	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POFUT1	23509	broad.mit.edu	37	20	30804817	30804817	+	Intron	SNP	G	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POLD1	5424	broad.mit.edu	37	19	50906596	50906596	+	Intron	SNP	G	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POLR3A	11128	broad.mit.edu	37	10	79777351	79777351	+	Missense_Mutation	SNP	C	G	G			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POTEA	340441	broad.mit.edu	37	8	43148006	43148006	+	Intron	SNP	G	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPFIBP2	8495	broad.mit.edu	37	11	7539111	7539111	+	Intron	SNP	G	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPP1R16B	26051	broad.mit.edu	37	20	37536601	37536601	+	Intron	SNP	A	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPP2R4	5524	broad.mit.edu	37	9	131909771	131909771	+	3'UTR	SNP	G	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPP2R5E	5529	broad.mit.edu	37	14	63861875	63861875	+	Intron	SNP	G	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRDM16	63976	broad.mit.edu	37	1	3103017	3103017	+	Missense_Mutation	SNP	G	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRDM4	11108	broad.mit.edu	37	12	108145425	108145425	+	Missense_Mutation	SNP	G	C	C			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRDM5	11107	broad.mit.edu	37	4	121737722	121737722	+	Nonsense_Mutation	SNP	G	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PREX2	80243	broad.mit.edu	37	8	68999912	68999912	+	Intron	SNP	G	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRKCB	5579	broad.mit.edu	37	16	24202429	24202429	+	Missense_Mutation	SNP	G	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRKCZ	5590	broad.mit.edu	37	1	2077475	2077475	+	Missense_Mutation	SNP	A	G	G			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRKD1	5587	broad.mit.edu	37	14	30396583	30396583	+	Frame_Shift_Del	DEL	C	-	-			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRKG2	5593	broad.mit.edu	37	4	82010963	82010963	+	Intron	SNP	A	G	G			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRMT5	10419	broad.mit.edu	37	14	23397745	23397745	+	Missense_Mutation	SNP	C	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PROCA1	147011	broad.mit.edu	37	17	27030878	27030878	+	Missense_Mutation	SNP	T	C	C			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PROM1	8842	broad.mit.edu	37	4	16014962	16014962	+	Splice_Site	SNP	C	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PROM2	150696	broad.mit.edu	37	2	95952518	95952518	+	Intron	SNP	A	G	G			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRSS1	5644	broad.mit.edu	37	7	142459794	142459794	+	Missense_Mutation	SNP	T	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRSS1	5644	broad.mit.edu	37	7	142460449	142460449	+	Intron	SNP	C	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRSS8	5652	broad.mit.edu	37	16	31146444	31146444	+	Intron	SNP	T	C	C			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRUNE2	158471	broad.mit.edu	37	9	79325909	79325909	+	Missense_Mutation	SNP	G	C	C			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSG8	440533	broad.mit.edu	37	19	43269863	43269863	+	5'Flank	SNP	C	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTBP2	58155	broad.mit.edu	37	1	97236293	97236293	+	Silent	SNP	A	G	G			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTCD1	26024	broad.mit.edu	37	7	99022675	99022675	+	Missense_Mutation	SNP	C	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTCHD2	57540	broad.mit.edu	37	1	11562989	11562989	+	Intron	SNP	C	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTGDR	5729	broad.mit.edu	37	14	52735003	52735003	+	Missense_Mutation	SNP	C	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTK6	5753	broad.mit.edu	37	20	62164887	62164887	+	Intron	SNP	G	C	C			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRB	5787	broad.mit.edu	37	12	70933485	70933485	+	Missense_Mutation	SNP	G	C	C			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRF	5792	broad.mit.edu	37	1	44064616	44064616	+	Intron	SNP	G	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRO	5800	broad.mit.edu	37	12	15713185	15713185	+	Frame_Shift_Del	DEL	C	-	-			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRU	10076	broad.mit.edu	37	1	29618377	29618378	+	Intron	DNP	CC	TT	TT			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRZ1	5803	broad.mit.edu	37	7	121674370	121674370	+	Missense_Mutation	SNP	C	G	G			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PUM1	9698	broad.mit.edu	37	1	31468199	31468202	+	Intron	DEL	TAAT	-	-			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PYGL	5836	broad.mit.edu	37	14	51378535	51378535	+	Missense_Mutation	SNP	C	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
QKI	9444	broad.mit.edu	37	6	163985668	163985668	+	Intron	SNP	A	G	G			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
QSER1	79832	broad.mit.edu	37	11	32956717	32956717	+	Missense_Mutation	SNP	A	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
QSOX2	169714	broad.mit.edu	37	9	139108615	139108615	+	Intron	SNP	C	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
QTRTD1	79691	broad.mit.edu	37	3	113799036	113799036	+	Intron	SNP	C	G	G			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAB10	10890	broad.mit.edu	37	2	26332622	26332622	+	Intron	SNP	G	C	C			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAB18	22931	broad.mit.edu	37	10	27815671	27815671	+	Intron	SNP	G	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAB37	326624	broad.mit.edu	37	17	72741181	72741181	+	Missense_Mutation	SNP	A	G	G			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAD54L2	23132	broad.mit.edu	37	3	51679135	51679135	+	Missense_Mutation	SNP	G	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RALGPS2	55103	broad.mit.edu	37	1	178745997	178745997	+	Intron	SNP	G	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RANBP10	57610	broad.mit.edu	37	16	67761665	67761665	+	Missense_Mutation	SNP	C	G	G			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAPGEF6	51735	broad.mit.edu	37	5	130828525	130828525	+	Intron	SNP	T	C	C			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RASGRF1	5923	broad.mit.edu	37	15	79307566	79307566	+	Intron	SNP	C	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RASGRP4	115727	broad.mit.edu	37	19	38901750	38901750	+	Intron	SNP	C	G	G			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RASSF2	9770	broad.mit.edu	37	20	4771142	4771142	+	Missense_Mutation	SNP	G	C	C			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RBM16	22828	broad.mit.edu	37	6	155148467	155148467	+	Intron	SNP	T	C	C			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RBM6	10180	broad.mit.edu	37	3	50102318	50102318	+	Intron	SNP	G	C	C			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
REG1B	5968	broad.mit.edu	37	2	79312277	79312277	+	3'UTR	SNP	T	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
REG3G	130120	broad.mit.edu	37	2	79253230	79253230	+	Missense_Mutation	SNP	C	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
REG3G	130120	broad.mit.edu	37	2	79255046	79255046	+	Silent	SNP	G	C	C			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RELN	5649	broad.mit.edu	37	7	103629559	103629559	+	Intron	SNP	G	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RET	5979	broad.mit.edu	37	10	43601846	43601846	+	Missense_Mutation	SNP	G	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RGPD4	285190	broad.mit.edu	37	2	108479106	108479106	+	Intron	SNP	G	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RGS13	6003	broad.mit.edu	37	1	192613467	192613467	+	Missense_Mutation	SNP	G	C	C			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RGS22	26166	broad.mit.edu	37	8	100974798	100974798	+	Intron	SNP	G	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RGS3	5998	broad.mit.edu	37	9	116224430	116224430	+	Missense_Mutation	SNP	C	G	G			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RGS7	6000	broad.mit.edu	37	1	241094038	241094038	+	Nonsense_Mutation	SNP	C	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RIMS2	9699	broad.mit.edu	37	8	104924506	104924506	+	Intron	SNP	C	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RIMS2	9699	broad.mit.edu	37	8	105105868	105105868	+	Missense_Mutation	SNP	T	C	C			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RIMS4	140730	broad.mit.edu	37	20	43399960	43399960	+	Silent	SNP	G	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNF185	91445	broad.mit.edu	37	22	31582944	31582944	+	Intron	SNP	C	G	G			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNF19B	127544	broad.mit.edu	37	1	33402945	33402945	+	Intron	SNP	G	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNF207	388591	broad.mit.edu	37	1	6266722	6266722	+	Missense_Mutation	SNP	G	C	C			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ROBO2	6092	broad.mit.edu	37	3	77693809	77693810	+	Intron	DNP	CC	AA	AA			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RP1L1	94137	broad.mit.edu	37	8	10465293	10465293	+	Missense_Mutation	SNP	C	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPL23P8	222901	broad.mit.edu	37	7	20867087	20867087	+	RNA	SNP	G	C	C			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPP30	10556	broad.mit.edu	37	10	92654489	92654489	+	Intron	SNP	A	G	G			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPS6KA6	27330	broad.mit.edu	37	X	83390111	83390111	+	Splice_Site	SNP	C	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RRAS2	22800	broad.mit.edu	37	11	14303291	14303291	+	Intron	SNP	T	C	C			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RREB1	6239	broad.mit.edu	37	6	7230139	7230139	+	Nonsense_Mutation	SNP	G	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RUNDC1	146923	broad.mit.edu	37	17	41142924	41142924	+	Missense_Mutation	SNP	G	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RUNDC3A	10900	broad.mit.edu	37	17	42393898	42393898	+	Intron	SNP	C	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RUNX1T1	862	broad.mit.edu	37	8	93003909	93003909	+	Missense_Mutation	SNP	G	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RUNX1T1	862	broad.mit.edu	37	8	93023209	93023209	+	Intron	SNP	G	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR1	6261	broad.mit.edu	37	19	38995479	38995479	+	Nonsense_Mutation	SNP	C	G	G			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR2	6262	broad.mit.edu	37	1	237759007	237759007	+	Intron	SNP	C	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR2	6262	broad.mit.edu	37	1	237788944	237788944	+	Intron	SNP	C	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR2	6262	broad.mit.edu	37	1	237789139	237789139	+	Intron	SNP	C	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR2	6262	broad.mit.edu	37	1	237948014	237948014	+	Missense_Mutation	SNP	G	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SAMD12	401474	broad.mit.edu	37	8	119593184	119593184	+	Intron	SNP	G	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SAMD14	201191	broad.mit.edu	37	17	48202960	48202960	+	Intron	SNP	C	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SAV1	60485	broad.mit.edu	37	14	51111641	51111641	+	Missense_Mutation	SNP	C	G	G			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SBF1	6305	broad.mit.edu	37	22	50897848	50897848	+	Intron	SNP	G	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCN1A	6323	broad.mit.edu	37	2	166848855	166848855	+	Missense_Mutation	SNP	C	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCN2A	6326	broad.mit.edu	37	2	166245307	166245307	+	Missense_Mutation	SNP	G	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCN3A	6328	broad.mit.edu	37	2	165953895	165953895	+	Missense_Mutation	SNP	G	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCN3A	6328	broad.mit.edu	37	2	165984542	165984542	+	Missense_Mutation	SNP	C	G	G			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCN5A	6331	broad.mit.edu	37	3	38592217	38592217	+	Silent	SNP	G	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SDK1	221935	broad.mit.edu	37	7	4169711	4169711	+	Missense_Mutation	SNP	G	C	C			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SDPR	8436	broad.mit.edu	37	2	192700754	192700754	+	Silent	SNP	C	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEC14L5	9717	broad.mit.edu	37	16	5053350	5053350	+	Intron	SNP	G	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEC22B	9554	broad.mit.edu	37	1	145116003	145116003	+	3'UTR	SNP	A	G	G			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEC31B	25956	broad.mit.edu	37	10	102256930	102256931	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SELV	348303	broad.mit.edu	37	19	40009471	40009471	+	Intron	SNP	C	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEMA4G	57715	broad.mit.edu	37	10	102739888	102739888	+	Missense_Mutation	SNP	G	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEMA5A	9037	broad.mit.edu	37	5	9197192	9197192	+	Intron	SNP	G	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SERPINA3	12	broad.mit.edu	37	14	95081191	95081191	+	Missense_Mutation	SNP	G	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SFMBT2	57713	broad.mit.edu	37	10	7212873	7212873	+	Intron	SNP	C	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SGIP1	84251	broad.mit.edu	37	1	67147825	67147825	+	Missense_Mutation	SNP	C	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SGIP1	84251	broad.mit.edu	37	1	67185020	67185020	+	Missense_Mutation	SNP	C	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SGK2	10110	broad.mit.edu	37	20	42196680	42196680	+	Intron	SNP	C	G	G			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SGK2	10110	broad.mit.edu	37	20	42213633	42213633	+	Missense_Mutation	SNP	G	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SGOL1	151648	broad.mit.edu	37	3	20216036	20216036	+	Silent	SNP	G	C	C			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SH2D6	284948	broad.mit.edu	37	2	85662892	85662892	+	Missense_Mutation	SNP	G	T	T	rs140818438		TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SH3D19	152503	broad.mit.edu	37	4	152069310	152069310	+	Nonsense_Mutation	SNP	G	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SH3GL1	6455	broad.mit.edu	37	19	4400305	4400305	+	Intron	SNP	C	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SIPA1L2	57568	broad.mit.edu	37	1	232600588	232600588	+	Missense_Mutation	SNP	C	G	G			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SIPA1L2	57568	broad.mit.edu	37	1	232600610	232600610	+	Silent	SNP	G	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SIX4	51804	broad.mit.edu	37	14	61180536	61180536	+	Silent	SNP	T	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SIX6	4990	broad.mit.edu	37	14	60976401	60976401	+	Missense_Mutation	SNP	C	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC10A7	84068	broad.mit.edu	37	4	147179844	147179844	+	Missense_Mutation	SNP	C	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC12A3	6559	broad.mit.edu	37	16	56913449	56913449	+	Intron	SNP	C	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC12A4	6560	broad.mit.edu	37	16	68002416	68002416	+	Missense_Mutation	SNP	C	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC12A7	10723	broad.mit.edu	37	5	1064428	1064428	+	Intron	SNP	C	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC14A2	8170	broad.mit.edu	37	18	43204880	43204880	+	Intron	SNP	C	G	G			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC14A2	8170	broad.mit.edu	37	18	43221223	43221223	+	Missense_Mutation	SNP	C	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC17A9	63910	broad.mit.edu	37	20	61594722	61594722	+	Splice_Site	SNP	G	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC22A14	9389	broad.mit.edu	37	3	38359683	38359683	+	Intron	SNP	T	C	C			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC22A6	9356	broad.mit.edu	37	11	62747367	62747367	+	Missense_Mutation	SNP	C	G	G			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC24A5	283652	broad.mit.edu	37	15	48414089	48414089	+	Missense_Mutation	SNP	G	C	C			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC25A10	1468	broad.mit.edu	37	17	79682776	79682776	+	Intron	SNP	G	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC25A15	10166	broad.mit.edu	37	13	41373228	41373228	+	Missense_Mutation	SNP	G	C	C			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC26A4	5172	broad.mit.edu	37	7	107338566	107338566	+	Intron	SNP	T	G	G			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC26A5	375611	broad.mit.edu	37	7	103038452	103038452	+	Nonsense_Mutation	SNP	C	A	A	rs144199565		TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC26A9	115019	broad.mit.edu	37	1	205892841	205892841	+	Intron	SNP	G	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC27A6	28965	broad.mit.edu	37	5	128359320	128359320	+	Missense_Mutation	SNP	C	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC2A10	81031	broad.mit.edu	37	20	45353979	45353979	+	Missense_Mutation	SNP	G	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC35F1	222553	broad.mit.edu	37	6	118635234	118635234	+	Missense_Mutation	SNP	G	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC36A2	153201	broad.mit.edu	37	5	150723186	150723186	+	Intron	SNP	G	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC45A2	51151	broad.mit.edu	37	5	33982488	33982488	+	Missense_Mutation	SNP	C	G	G			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC4A9	83697	broad.mit.edu	37	5	139742515	139742515	+	Missense_Mutation	SNP	C	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC6A20	54716	broad.mit.edu	37	3	45814192	45814192	+	Intron	SNP	G	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC9A6	10479	broad.mit.edu	37	X	135112153	135112153	+	Intron	SNP	C	G	G			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLCO2B1	11309	broad.mit.edu	37	11	74911421	74911421	+	Missense_Mutation	SNP	G	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLIT1	6585	broad.mit.edu	37	10	98762557	98762557	+	Missense_Mutation	SNP	T	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLITRK3	22865	broad.mit.edu	37	3	164906390	164906390	+	Silent	SNP	G	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLITRK6	84189	broad.mit.edu	37	13	86369467	86369467	+	Missense_Mutation	SNP	G	C	C			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMAD4	4089	broad.mit.edu	37	18	48573354	48573354	+	5'UTR	SNP	A	C	C			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMARCD2	6603	broad.mit.edu	37	17	61910810	61910810	+	Intron	SNP	C	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMC2	10592	broad.mit.edu	37	9	106864511	106864511	+	Intron	SNP	G	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMC6	79677	broad.mit.edu	37	2	17907545	17907545	+	Intron	SNP	C	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMG7	9887	broad.mit.edu	37	1	183511692	183511692	+	Intron	SNP	G	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMR3B	10879	broad.mit.edu	37	4	71255713	71255713	+	3'UTR	SNP	G	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMYD1	150572	broad.mit.edu	37	2	88396404	88396404	+	Intron	SNP	C	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNAP25	6616	broad.mit.edu	37	20	10286767	10286767	+	Intron	SNP	C	G	G			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNTB2	6645	broad.mit.edu	37	16	69279458	69279458	+	Intron	SNP	T	C	C			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNX6	58533	broad.mit.edu	37	14	35055519	35055519	+	Intron	SNP	G	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SORCS3	22986	broad.mit.edu	37	10	106917109	106917109	+	Intron	SNP	G	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SOX3	6658	broad.mit.edu	37	X	139586803	139586803	+	Silent	SNP	C	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SP140L	93349	broad.mit.edu	37	2	231235658	231235658	+	Missense_Mutation	SNP	A	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPAG16	79582	broad.mit.edu	37	2	215145530	215145530	+	Intron	SNP	T	C	C			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPAG17	200162	broad.mit.edu	37	1	118509152	118509152	+	Intron	SNP	G	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPANXN3	139067	broad.mit.edu	37	X	142605183	142605183	+	Missense_Mutation	SNP	T	C	C			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPARCL1	8404	broad.mit.edu	37	4	88416260	88416260	+	Missense_Mutation	SNP	G	C	C			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPATA9	83890	broad.mit.edu	37	5	95011109	95011109	+	Intron	SNP	C	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPDEF	25803	broad.mit.edu	37	6	34508806	34508806	+	Silent	SNP	G	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPEG	10290	broad.mit.edu	37	2	220337565	220337565	+	Intron	SNP	G	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPTA1	6708	broad.mit.edu	37	1	158650594	158650594	+	Intron	SNP	G	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SRCAP	10847	broad.mit.edu	37	16	30715722	30715722	+	Intron	SNP	C	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SSH3	54961	broad.mit.edu	37	11	67077349	67077349	+	Missense_Mutation	SNP	T	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SSX6	280657	broad.mit.edu	37	X	47969837	47969837	+	Intron	SNP	C	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SSX6	280657	broad.mit.edu	37	X	47972706	47972706	+	Intron	SNP	C	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STAM2	10254	broad.mit.edu	37	2	152977303	152977303	+	Missense_Mutation	SNP	T	C	C			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STAMBP	10617	broad.mit.edu	37	2	74086287	74086287	+	Intron	SNP	T	C	C	rs76305876	byFrequency;by1000genomes	TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STAT1	6772	broad.mit.edu	37	2	191864282	191864282	+	Intron	SNP	C	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STK39	27347	broad.mit.edu	37	2	169020026	169020026	+	Intron	SNP	C	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STX1B	112755	broad.mit.edu	37	16	31012357	31012357	+	Intron	SNP	G	C	C			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STXBP3	6814	broad.mit.edu	37	1	109340940	109340940	+	Intron	SNP	G	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SUCLG1	8802	broad.mit.edu	37	2	84650981	84650981	+	Intron	SNP	G	C	C			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SUCLG2	8801	broad.mit.edu	37	3	67548790	67548790	+	Intron	SNP	T	C	C			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SUPT3H	8464	broad.mit.edu	37	6	45066617	45066617	+	Intron	SNP	G	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SV2B	9899	broad.mit.edu	37	15	91795753	91795753	+	Intron	SNP	G	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYNE2	23224	broad.mit.edu	37	14	64488150	64488150	+	Missense_Mutation	SNP	G	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYT12	91683	broad.mit.edu	37	11	66811414	66811414	+	Intron	SNP	C	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYTL5	94122	broad.mit.edu	37	X	37961594	37961594	+	Splice_Site	SNP	G	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAAR2	9287	broad.mit.edu	37	6	132938383	132938383	+	Missense_Mutation	SNP	C	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAAR2	9287	broad.mit.edu	37	6	132939368	132939368	+	Intron	SNP	A	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAF9	6880	broad.mit.edu	37	5	68665364	68665364	+	5'Flank	SNP	C	G	G			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TANC1	85461	broad.mit.edu	37	2	160080800	160080800	+	Missense_Mutation	SNP	C	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAS2R1	50834	broad.mit.edu	37	5	9629772	9629772	+	Missense_Mutation	SNP	G	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAS2R41	259287	broad.mit.edu	37	7	143175820	143175820	+	Silent	SNP	C	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBC1D3P2	440452	broad.mit.edu	37	17	60345227	60345227	+	Intron	DEL	C	-	-			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBC1D3P2	440452	broad.mit.edu	37	17	60349330	60349330	+	Missense_Mutation	SNP	C	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBC1D5	9779	broad.mit.edu	37	3	17550136	17550136	+	Intron	DEL	T	-	-			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBPL2	387332	broad.mit.edu	37	14	55895506	55895506	+	Intron	SNP	A	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBX19	9095	broad.mit.edu	37	1	168208421	168208421	+	Intron	SNP	A	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBX4	9496	broad.mit.edu	37	17	59543430	59543430	+	Intron	SNP	G	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBX5	6910	broad.mit.edu	37	12	114836423	114836423	+	Missense_Mutation	SNP	G	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBXAS1	6916	broad.mit.edu	37	7	139715629	139715629	+	Missense_Mutation	SNP	T	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TCP11	6954	broad.mit.edu	37	6	35090142	35090142	+	Intron	SNP	T	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TDP1	55775	broad.mit.edu	37	14	90455297	90455297	+	Missense_Mutation	SNP	G	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TDRD5	163589	broad.mit.edu	37	1	179631496	179631496	+	Intron	SNP	G	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TEAD3	7005	broad.mit.edu	37	6	35445212	35445212	+	Intron	DEL	C	-	-	rs3215481		TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TEKT5	146279	broad.mit.edu	37	16	10721632	10721632	+	Silent	SNP	G	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TESK2	10420	broad.mit.edu	37	1	45923457	45923457	+	Missense_Mutation	SNP	T	C	C			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TFCP2	7024	broad.mit.edu	37	12	51497885	51497885	+	Intron	SNP	C	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TFDP1	7027	broad.mit.edu	37	13	114287391	114287391	+	Intron	SNP	C	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TGFBRAP1	9392	broad.mit.edu	37	2	105900904	105900904	+	Intron	SNP	C	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TGIF2LX	90316	broad.mit.edu	37	X	89177843	89177843	+	3'UTR	SNP	C	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TGM1	7051	broad.mit.edu	37	14	24731213	24731213	+	Intron	SNP	C	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
THBS2	7058	broad.mit.edu	37	6	169637775	169637775	+	Silent	SNP	G	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
THNSL1	79896	broad.mit.edu	37	10	25312405	25312405	+	Missense_Mutation	SNP	G	C	C			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
THSD7A	221981	broad.mit.edu	37	7	11468417	11468417	+	Intron	SNP	T	G	G			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
THSD7B	80731	broad.mit.edu	37	2	138169178	138169178	+	Splice_Site	SNP	G	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TIAM1	7074	broad.mit.edu	37	21	32508145	32508145	+	Intron	SNP	C	G	G			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TINAG	27283	broad.mit.edu	37	6	54208013	54208013	+	Intron	SNP	T	C	C			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TJP1	7082	broad.mit.edu	37	15	30008950	30008950	+	Missense_Mutation	SNP	C	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TLL1	7092	broad.mit.edu	37	4	166976321	166976321	+	Missense_Mutation	SNP	G	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TLN2	83660	broad.mit.edu	37	15	63073381	63073381	+	Missense_Mutation	SNP	G	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TM4SF5	9032	broad.mit.edu	37	17	4684169	4684169	+	Intron	SNP	G	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM117	84216	broad.mit.edu	37	12	44402650	44402650	+	Intron	SNP	G	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM131	23505	broad.mit.edu	37	2	98408868	98408868	+	Silent	SNP	C	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM175	84286	broad.mit.edu	37	4	946338	946338	+	Intron	SNP	C	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM195	392636	broad.mit.edu	37	7	15599958	15599958	+	Intron	SNP	C	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM200A	114801	broad.mit.edu	37	6	130761972	130761972	+	Silent	SNP	T	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM213	155006	broad.mit.edu	37	7	138487821	138487821	+	3'UTR	SNP	G	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM67	91147	broad.mit.edu	37	8	94807498	94807498	+	Intron	SNP	G	C	C			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM67	91147	broad.mit.edu	37	8	94822191	94822191	+	Intron	SNP	C	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM95	339168	broad.mit.edu	37	17	7259314	7259314	+	Intron	SNP	C	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMIGD1	388364	broad.mit.edu	37	17	28651849	28651849	+	Missense_Mutation	SNP	G	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMPPE	643853	broad.mit.edu	37	3	33135131	33135131	+	Missense_Mutation	SNP	T	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMPRSS11A	339967	broad.mit.edu	37	4	68780441	68780441	+	Silent	SNP	G	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNKS2	80351	broad.mit.edu	37	10	93609410	93609410	+	Intron	SNP	G	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNNT3	7140	broad.mit.edu	37	11	1955021	1955021	+	Missense_Mutation	SNP	C	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNS1	7145	broad.mit.edu	37	2	218713187	218713187	+	Missense_Mutation	SNP	G	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TP53	7157	broad.mit.edu	37	17	7578474	7578474	+	Frame_Shift_Del	DEL	C	-	-			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPK1	27010	broad.mit.edu	37	7	144380139	144380139	+	Intron	SNP	C	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPTE	7179	broad.mit.edu	37	21	10998064	10998064	+	Intron	SNP	G	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRHDE	29953	broad.mit.edu	37	12	73046138	73046138	+	Silent	SNP	A	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIM49	57093	broad.mit.edu	37	11	89537734	89537734	+	Intron	SNP	C	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIM55	84675	broad.mit.edu	37	8	67086987	67086987	+	3'UTR	SNP	A	G	G			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIO	7204	broad.mit.edu	37	5	14358319	14358319	+	Missense_Mutation	SNP	G	C	C			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRO	7216	broad.mit.edu	37	X	54956525	54956525	+	Missense_Mutation	SNP	C	G	G			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPA1	8989	broad.mit.edu	37	8	72946498	72946498	+	Silent	SNP	G	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPC4	7223	broad.mit.edu	37	13	38237539	38237539	+	Intron	SNP	T	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPV6	55503	broad.mit.edu	37	7	142569542	142569542	+	Missense_Mutation	SNP	C	G	G			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPV6	55503	broad.mit.edu	37	7	142573311	142573311	+	Silent	SNP	G	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRYX3	136541	broad.mit.edu	37	7	141952034	141952034	+	3'UTR	SNP	C	G	G			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TSHZ2	128553	broad.mit.edu	37	20	51872436	51872436	+	Silent	SNP	C	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TSHZ3	57616	broad.mit.edu	37	19	31768533	31768533	+	Missense_Mutation	SNP	C	G	G			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TSPAN10	83882	broad.mit.edu	37	17	79612618	79612619	+	Missense_Mutation	DNP	TG	CT	CT			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTC21B	79809	broad.mit.edu	37	2	166785655	166785655	+	Missense_Mutation	SNP	C	G	G			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTC7B	145567	broad.mit.edu	37	14	91233277	91233277	+	Intron	SNP	C	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTLL8	164714	broad.mit.edu	37	22	50487647	50487647	+	Intron	SNP	C	G	G			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179596608	179596608	+	Missense_Mutation	SNP	G	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TUBB4Q	56604	broad.mit.edu	37	4	190904438	190904438	+	Missense_Mutation	SNP	G	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TUBB8	347688	broad.mit.edu	37	10	94648	94648	+	Missense_Mutation	SNP	G	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TUBG2	27175	broad.mit.edu	37	17	40818413	40818413	+	Nonsense_Mutation	SNP	C	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TWISTNB	221830	broad.mit.edu	37	7	19739928	19739928	+	Intron	SNP	C	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TYR	7299	broad.mit.edu	37	11	88961178	88961178	+	Intron	SNP	T	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UGT2B10	7365	broad.mit.edu	37	4	69879796	69879796	+	Missense_Mutation	SNP	A	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UGT2B15	7366	broad.mit.edu	37	4	69535513	69535513	+	Intron	SNP	C	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UGT2B7	7364	broad.mit.edu	37	4	69962880	69962880	+	Missense_Mutation	SNP	G	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UGT2B7	7364	broad.mit.edu	37	4	69974127	69974127	+	Intron	SNP	G	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UGT3A1	133688	broad.mit.edu	37	5	35954243	35954243	+	3'UTR	SNP	G	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UNC5C	8633	broad.mit.edu	37	4	96469795	96469795	+	Intron	SNP	G	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UNC5D	137970	broad.mit.edu	37	8	35606136	35606136	+	Missense_Mutation	SNP	A	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USH2A	7399	broad.mit.edu	37	1	216138678	216138679	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USH2A	7399	broad.mit.edu	37	1	216497086	216497086	+	Intron	SNP	G	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP13	8975	broad.mit.edu	37	3	179437871	179437871	+	Intron	SNP	G	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP28	57646	broad.mit.edu	37	11	113675814	113675814	+	Intron	SNP	T	C	C			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP40	55230	broad.mit.edu	37	2	234436080	234436080	+	Silent	SNP	T	C	C			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP42	84132	broad.mit.edu	37	7	6155200	6155200	+	Intron	SNP	A	G	G			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UST	10090	broad.mit.edu	37	6	149262284	149262284	+	Intron	SNP	T	C	C			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UTRN	7402	broad.mit.edu	37	6	144769762	144769762	+	Silent	SNP	G	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UTRN	7402	broad.mit.edu	37	6	145124231	145124231	+	Missense_Mutation	SNP	G	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	15041954	15041954	+	IGR	SNP	G	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	37812798	37812798	+	IGR	SNP	A	G	G			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	52444774	52444774	+	IGR	SNP	G	C	C			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	92813363	92813363	+	IGR	SNP	G	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	98510413	98510413	+	IGR	SNP	C	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	20177526	20177526	+	IGR	SNP	G	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	23426106	23426106	+	IGR	SNP	C	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	49854648	49854649	+	IGR	DNP	GG	TT	TT			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	49974925	49974925	+	IGR	SNP	G	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	5114829	5114829	+	IGR	SNP	C	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	51527341	51527341	+	IGR	SNP	C	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	55212438	55212438	+	IGR	SNP	G	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	55212608	55212608	+	IGR	SNP	C	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	56143335	56143335	+	IGR	SNP	C	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	6067844	6067844	+	IGR	SNP	G	C	C			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	62815599	62815599	+	IGR	SNP	C	G	G			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	67557675	67557675	+	IGR	SNP	C	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	89500135	89500135	+	IGR	DEL	G	-	-			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	32046705	32046705	+	IGR	SNP	G	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	38600863	38600863	+	IGR	SNP	C	A	A	rs141213709	by1000genomes	TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	68406119	68406119	+	IGR	SNP	A	G	G			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	91924642	91924642	+	IGR	SNP	C	G	G			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	103615781	103615781	+	IGR	SNP	A	G	G			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	19475796	19475796	+	IGR	SNP	G	C	C			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	19500216	19500216	+	IGR	SNP	C	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	19758724	19758724	+	IGR	SNP	G	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	20137347	20137347	+	IGR	SNP	G	C	C			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	20147570	20147570	+	IGR	SNP	G	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	20148023	20148023	+	IGR	SNP	A	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	20148066	20148066	+	IGR	SNP	C	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	52755598	52755598	+	IGR	SNP	C	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	75340498	75340498	+	IGR	SNP	T	C	C			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	82383327	82383327	+	IGR	SNP	G	C	C			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	96103353	96103353	+	IGR	SNP	A	G	G			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	84722744	84722744	+	IGR	SNP	G	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	32077784	32077784	+	IGR	DEL	G	-	-			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	32619156	32619156	+	IGR	SNP	A	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	33380143	33380144	+	IGR	DNP	CC	AA	AA			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	33380253	33380253	+	IGR	SNP	G	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	33396137	33396137	+	IGR	SNP	A	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	33424922	33424922	+	IGR	SNP	T	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	33527868	33527868	+	IGR	SNP	G	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	33605107	33605107	+	IGR	SNP	G	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	34582344	34582344	+	IGR	SNP	C	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	34582573	34582573	+	IGR	SNP	G	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	34956637	34956637	+	IGR	SNP	A	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	58810906	58810906	+	IGR	SNP	C	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	60058629	60058629	+	IGR	SNP	G	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	78083563	78083563	+	IGR	SNP	G	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	85849950	85849950	+	IGR	SNP	C	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	33786819	33786819	+	IGR	SNP	A	G	G			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	53628790	53628790	+	IGR	SNP	G	C	C			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	14614098	14614098	+	IGR	SNP	C	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	14632030	14632030	+	IGR	SNP	G	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	14890013	14890013	+	IGR	SNP	T	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	22497267	22497267	+	IGR	SNP	C	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	22647423	22647423	+	IGR	SNP	G	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	23158509	23158509	+	IGR	DEL	C	-	-			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	53833964	53833964	+	IGR	SNP	C	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	617174	617174	+	IGR	SNP	G	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	106240668	106240668	+	IGR	SNP	C	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	147314566	147314566	+	IGR	SNP	G	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	149262766	149262766	+	IGR	SNP	C	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	155560911	155560911	+	IGR	SNP	C	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	158145534	158145534	+	IGR	SNP	A	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	170339155	170339155	+	IGR	SNP	C	G	G			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	192216687	192216687	+	IGR	SNP	G	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	240176178	240176178	+	IGR	SNP	G	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	249066186	249066187	+	IGR	INS	-	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	97145178	97145178	+	IGR	SNP	G	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	17993513	17993513	+	IGR	SNP	T	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	57840681	57840681	+	IGR	SNP	C	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	14899855	14899855	+	IGR	SNP	C	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	24474200	24474200	+	IGR	SNP	G	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	24763255	24763255	+	IGR	SNP	A	G	G			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	22	16123320	16123320	+	IGR	SNP	G	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	22	16871099	16871099	+	IGR	SNP	C	G	G			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	22	16909706	16909706	+	IGR	SNP	G	C	C			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	22	20957200	20957200	+	IGR	SNP	A	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	130254073	130254073	+	IGR	SNP	C	G	G			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	130254325	130254325	+	IGR	SNP	C	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	130987244	130987244	+	IGR	SNP	G	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	131266458	131266458	+	IGR	SNP	C	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	132181403	132181403	+	IGR	SNP	G	C	C			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	136957273	136957273	+	IGR	SNP	C	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	168571909	168571909	+	IGR	SNP	C	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	188690992	188690992	+	IGR	SNP	G	C	C			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	225036138	225036138	+	IGR	SNP	G	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	34065133	34065133	+	IGR	SNP	G	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	91795765	91795765	+	IGR	SNP	C	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	91800197	91800197	+	IGR	SNP	C	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	12913920	12913920	+	IGR	SNP	C	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	145542269	145542269	+	IGR	SNP	G	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	20054026	20054026	+	IGR	SNP	G	C	C			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	75444470	75444470	+	IGR	SNP	C	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	96069300	96069300	+	IGR	SNP	G	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	96472914	96472914	+	IGR	SNP	G	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	113378183	113378183	+	IGR	SNP	G	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	135873410	135873410	+	IGR	SNP	G	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	165865215	165865215	+	IGR	SNP	T	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	3938947	3938948	+	IGR	INS	-	G	G			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	49505117	49505117	+	IGR	SNP	C	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	57390125	57390125	+	IGR	SNP	C	G	G			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	69574430	69574430	+	IGR	SNP	C	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	69863237	69863237	+	IGR	SNP	C	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	70172415	70172415	+	IGR	SNP	G	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	9388774	9388774	+	IGR	SNP	G	C	C			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	130330560	130330560	+	IGR	SNP	G	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	20305661	20305661	+	IGR	SNP	G	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	25910453	25910453	+	IGR	SNP	G	C	C			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	29002122	29002122	+	IGR	SNP	G	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	31053918	31053918	+	IGR	SNP	G	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	39720343	39720343	+	IGR	SNP	G	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	39721225	39721225	+	IGR	SNP	C	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	41967913	41967913	+	IGR	SNP	C	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	127980772	127980772	+	IGR	SNP	C	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	128960548	128960548	+	IGR	SNP	C	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	160133182	160133183	+	IGR	INS	-	C	C			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	48116879	48116879	+	IGR	SNP	C	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	48182147	48182147	+	IGR	DEL	C	-	-			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	52734943	52734943	+	IGR	SNP	C	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	55805284	55805284	+	IGR	SNP	C	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	126936054	126936054	+	IGR	SNP	G	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	144132367	144132367	+	IGR	SNP	G	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	21259781	21259781	+	IGR	SNP	G	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	27531458	27531458	+	IGR	SNP	C	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	53930801	53930801	+	IGR	SNP	T	C	C			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	55005466	55005466	+	IGR	SNP	C	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	57216576	57216576	+	IGR	SNP	C	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	63032785	63032785	+	IGR	SNP	G	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	63126583	63126583	+	IGR	SNP	G	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	65976628	65976628	+	IGR	SNP	T	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	82286576	82286576	+	IGR	SNP	C	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	48076508	48076508	+	IGR	SNP	G	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	56535359	56535359	+	IGR	SNP	G	C	C			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	58156719	58156719	+	IGR	SNP	C	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	67897779	67897779	+	IGR	SNP	T	C	C			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	13987494	13987494	+	IGR	SNP	C	G	G			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	19200887	19200887	+	IGR	SNP	C	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	67333962	67333962	+	IGR	SNP	C	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	76089614	76089614	+	IGR	SNP	G	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	134771581	134771582	+	IGR	DNP	CT	AG	AG			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	151648369	151648369	+	IGR	SNP	G	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	46421287	46421287	+	IGR	SNP	C	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	55307895	55307895	+	IGR	SNP	G	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	86958925	86958925	+	IGR	SNP	G	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	92477803	92477803	+	IGR	SNP	C	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VAMP4	8674	broad.mit.edu	37	1	171678733	171678733	+	Intron	SNP	C	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VAV1	7409	broad.mit.edu	37	19	6854203	6854203	+	Intron	SNP	G	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VCAN	1462	broad.mit.edu	37	5	82837721	82837721	+	Nonsense_Mutation	SNP	G	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VEGFC	7424	broad.mit.edu	37	4	177632878	177632878	+	Intron	SNP	C	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VIL1	7429	broad.mit.edu	37	2	219292707	219292707	+	Missense_Mutation	SNP	G	C	C			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VPS13A	23230	broad.mit.edu	37	9	79933380	79933380	+	Missense_Mutation	SNP	T	G	G			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VPS13B	157680	broad.mit.edu	37	8	100865784	100865784	+	Silent	SNP	C	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VPS35	55737	broad.mit.edu	37	16	46696803	46696803	+	Intron	SNP	G	C	C			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VPS36	51028	broad.mit.edu	37	13	53024757	53024757	+	5'UTR	SNP	C	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VPS41	27072	broad.mit.edu	37	7	38816413	38816413	+	Intron	DEL	G	-	-			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VSIG4	11326	broad.mit.edu	37	X	65253193	65253193	+	Intron	SNP	C	G	G			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VSTM2A	222008	broad.mit.edu	37	7	54610642	54610642	+	Intron	SNP	G	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VTA1	51534	broad.mit.edu	37	6	142491482	142491483	+	Splice_Site	DNP	GA	TT	TT			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VWA2	340706	broad.mit.edu	37	10	116008550	116008550	+	Intron	SNP	G	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VWA3B	200403	broad.mit.edu	37	2	98907069	98907069	+	Missense_Mutation	SNP	T	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VWA5A	4013	broad.mit.edu	37	11	123994268	123994268	+	Intron	SNP	G	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VWA5A	4013	broad.mit.edu	37	11	124016120	124016120	+	Intron	SNP	G	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR11	55717	broad.mit.edu	37	10	122630692	122630692	+	Silent	SNP	A	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR17	116966	broad.mit.edu	37	4	177081355	177081355	+	Intron	SNP	C	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR17	116966	broad.mit.edu	37	4	177100845	177100845	+	3'UTR	DEL	G	-	-			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR25	79446	broad.mit.edu	37	14	100847475	100847475	+	Missense_Mutation	SNP	G	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR25	79446	broad.mit.edu	37	14	100996231	100996231	+	Silent	SNP	G	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR27	253769	broad.mit.edu	37	6	170059146	170059147	+	Intron	DEL	AC	-	-			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR33	55339	broad.mit.edu	37	2	128471125	128471125	+	Intron	SNP	G	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR59	79726	broad.mit.edu	37	16	74982429	74982429	+	Silent	SNP	G	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WIPI1	55062	broad.mit.edu	37	17	66425071	66425071	+	Missense_Mutation	SNP	C	G	G			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WRNIP1	56897	broad.mit.edu	37	6	2770552	2770552	+	Missense_Mutation	SNP	C	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XDH	7498	broad.mit.edu	37	2	31594987	31594987	+	Intron	SNP	C	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XIRP2	129446	broad.mit.edu	37	2	168103300	168103300	+	Missense_Mutation	SNP	G	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XKR3	150165	broad.mit.edu	37	22	17280954	17280954	+	Intron	SNP	G	C	C			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XKR4	114786	broad.mit.edu	37	8	56366920	56366920	+	Intron	SNP	G	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XKR4	114786	broad.mit.edu	37	8	56367338	56367338	+	Intron	SNP	G	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XRCC6	2547	broad.mit.edu	37	22	42024312	42024312	+	Intron	SNP	C	G	G			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XRN2	22803	broad.mit.edu	37	20	21329033	21329033	+	Missense_Mutation	SNP	C	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
YY1AP1	55249	broad.mit.edu	37	1	155642500	155642500	+	Missense_Mutation	SNP	T	C	C			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZC3H12B	340554	broad.mit.edu	37	X	64718908	64718908	+	Missense_Mutation	SNP	G	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZEB2	9839	broad.mit.edu	37	2	145182344	145182344	+	Intron	SNP	C	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZFHX4	79776	broad.mit.edu	37	8	77618691	77618691	+	Nonsense_Mutation	SNP	A	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZFP57	346171	broad.mit.edu	37	6	29641443	29641443	+	Missense_Mutation	SNP	C	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZMYND8	23613	broad.mit.edu	37	20	45905074	45905074	+	Silent	SNP	G	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF207	7756	broad.mit.edu	37	17	30696361	30696361	+	Silent	SNP	G	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF334	55713	broad.mit.edu	37	20	45131272	45131272	+	Missense_Mutation	SNP	G	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF354C	30832	broad.mit.edu	37	5	178488946	178488946	+	Intron	SNP	G	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF410	57862	broad.mit.edu	37	14	74376137	74376137	+	Intron	SNP	T	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF521	25925	broad.mit.edu	37	18	22806774	22806774	+	Missense_Mutation	SNP	T	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF595	152687	broad.mit.edu	37	4	87124	87124	+	Missense_Mutation	SNP	C	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF676	163223	broad.mit.edu	37	19	22362793	22362793	+	Missense_Mutation	SNP	C	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF679	168417	broad.mit.edu	37	7	63709559	63709559	+	Intron	DEL	A	-	-			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF772	400720	broad.mit.edu	37	19	57987892	57987892	+	Intron	SNP	G	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF821	55565	broad.mit.edu	37	16	71894647	71894647	+	Intron	SNP	C	G	G			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF876P	642280	broad.mit.edu	37	4	248482	248482	+	RNA	SNP	G	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZP4	57829	broad.mit.edu	37	1	238048073	238048073	+	Silent	SNP	G	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZPBP	11055	broad.mit.edu	37	7	49977048	49977048	+	3'UTR	SNP	A	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	45672302	45672303	+	Intron	DNP	GG	TT	TT			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	22294115	22294115	+	Intron	SNP	C	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	22601087	22601087	+	Intron	SNP	G	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	102315373	102315373	+	5'Flank	SNP	C	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	29060713	29060713	+	RNA	SNP	A	C	C			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	36510228	36510228	+	Silent	SNP	G	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	142799615	142799615	+	Intron	SNP	G	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	142803425	142803425	+	Intron	SNP	C	G	G			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	146791137	146791137	+	Intron	SNP	C	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	43095434	43095434	+	5'Flank	SNP	G	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	186673345	186673345	+	Intron	SNP	G	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	65893611	65893611	+	Intron	SNP	C	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	91678936	91678936	+	5'Flank	SNP	G	T	T	rs3976053		TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	28927342	28927342	+	RNA	SNP	A	G	G			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	142242735	142242735	+	Intron	SNP	G	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	30583739	30583739	+	Intron	DEL	C	-	-			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	48163207	48163207	+	Intron	SNP	C	T	T			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
