Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer
AACSL	729522	broad.mit.edu	37	5	178208079	178208079	+	Intron	SNP	C	A	A			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCA12	26154	broad.mit.edu	37	2	215866254	215866254	+	Intron	SNP	G	T	T			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCA12	26154	broad.mit.edu	37	2	215976248	215976248	+	Intron	SNP	C	A	A	rs144574003	by1000genomes	TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCA8	10351	broad.mit.edu	37	17	66903951	66903951	+	Frame_Shift_Del	DEL	G	-	-			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCC11	85320	broad.mit.edu	37	16	48249206	48249206	+	Missense_Mutation	SNP	A	T	T			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCF2	10061	broad.mit.edu	37	7	150918751	150918751	+	Missense_Mutation	SNP	C	A	A			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCG4	64137	broad.mit.edu	37	11	119030878	119030878	+	Intron	SNP	G	T	T			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCG8	64241	broad.mit.edu	37	2	44102557	44102557	+	Intron	SNP	G	T	T			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABL2	27	broad.mit.edu	37	1	179190911	179190911	+	Intron	SNP	C	A	A			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABP1	26	broad.mit.edu	37	7	150554475	150554475	+	Missense_Mutation	SNP	A	G	G			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACBD7	414149	broad.mit.edu	37	10	15059114	15059114	+	Intron	SNP	C	A	A			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACE	1636	broad.mit.edu	37	17	61574261	61574261	+	Missense_Mutation	SNP	G	T	T			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM18	8749	broad.mit.edu	37	8	39564357	39564357	+	Missense_Mutation	SNP	C	A	A			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM30	11085	broad.mit.edu	37	1	120436737	120436737	+	Missense_Mutation	SNP	C	A	A			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMDEC1	27299	broad.mit.edu	37	8	24249805	24249805	+	Missense_Mutation	SNP	C	A	A	rs61731546	byFrequency;by1000genomes	TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS18	170692	broad.mit.edu	37	16	77465555	77465555	+	Intron	SNP	C	A	A			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS7	11173	broad.mit.edu	37	15	79059040	79059040	+	Silent	SNP	A	G	G	rs144043775	by1000genomes	TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS7	11173	broad.mit.edu	37	15	79059427	79059428	+	Intron	DNP	GG	TT	TT	rs111323916		TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTSL3	57188	broad.mit.edu	37	15	84559960	84559960	+	Intron	SNP	T	A	A			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAP1	11033	broad.mit.edu	37	7	943704	943704	+	Intron	SNP	C	A	A			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADCK1	57143	broad.mit.edu	37	14	78399861	78399861	+	3'UTR	SNP	C	T	T			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADCY1	107	broad.mit.edu	37	7	45743342	45743342	+	Silent	SNP	C	T	T	rs147203781		TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADCY2	108	broad.mit.edu	37	5	7521012	7521012	+	Missense_Mutation	SNP	G	C	C			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADCY8	114	broad.mit.edu	37	8	131833668	131833669	+	Splice_Site	DNP	TG	CT	CT			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AFF2	2334	broad.mit.edu	37	X	147924847	147924847	+	Intron	SNP	A	T	T			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AFG3L2	10939	broad.mit.edu	37	18	12356495	12356495	+	Intron	SNP	C	A	A			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AGPS	8540	broad.mit.edu	37	2	178305772	178305772	+	Intron	SNP	T	C	C			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AGXT	189	broad.mit.edu	37	2	241817407	241817407	+	Intron	SNP	C	T	T			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AKR1C2	1646	broad.mit.edu	37	10	5045924	5045924	+	Intron	SNP	A	C	C			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AKT3	10000	broad.mit.edu	37	1	243663046	243663046	+	Nonstop_Mutation	SNP	T	G	G			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AKT3	10000	broad.mit.edu	37	1	243809238	243809238	+	Missense_Mutation	SNP	C	T	T			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALDOB	229	broad.mit.edu	37	9	104192004	104192004	+	Intron	SNP	A	T	T			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALLC	55821	broad.mit.edu	37	2	3743913	3743913	+	Missense_Mutation	SNP	G	T	T			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALOX15	246	broad.mit.edu	37	17	4536594	4536594	+	Missense_Mutation	SNP	C	A	A	rs61099320		TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AMMECR1	9949	broad.mit.edu	37	X	109459671	109459671	+	Intron	SNP	T	C	C			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANAPC1	64682	broad.mit.edu	37	2	112608394	112608394	+	Missense_Mutation	SNP	T	C	C			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKRD1	27063	broad.mit.edu	37	10	92680671	92680671	+	Intron	SNP	C	A	A			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKRD30A	91074	broad.mit.edu	37	10	37422839	37422839	+	Intron	SNP	T	A	A			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKRD30A	91074	broad.mit.edu	37	10	37454083	37454083	+	Missense_Mutation	SNP	G	T	T			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKRD30A	91074	broad.mit.edu	37	10	37490274	37490274	+	Intron	SNP	A	T	T			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKRD30B	374860	broad.mit.edu	37	18	14784557	14784557	+	Intron	SNP	G	T	T			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AP3B1	8546	broad.mit.edu	37	5	77409635	77409635	+	Silent	SNP	C	T	T			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
APBA3	9546	broad.mit.edu	37	19	3753014	3753014	+	Intron	SNP	G	A	A			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AQP7	364	broad.mit.edu	37	9	33386950	33386950	+	Intron	SNP	G	T	T			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGAP25	9938	broad.mit.edu	37	2	69002465	69002465	+	Silent	SNP	C	A	A			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARL13B	200894	broad.mit.edu	37	3	93772009	93772009	+	Intron	SNP	T	A	A			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARMC2	84071	broad.mit.edu	37	6	109249475	109249475	+	Intron	SNP	C	T	T			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARMC3	219681	broad.mit.edu	37	10	23287106	23287106	+	Missense_Mutation	SNP	C	T	T			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ART5	116969	broad.mit.edu	37	11	3661436	3661436	+	Missense_Mutation	SNP	A	G	G			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP1B2	482	broad.mit.edu	37	17	7558817	7558817	+	Intron	SNP	C	T	T			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP8B4	79895	broad.mit.edu	37	15	50154324	50154324	+	Intron	SNP	A	T	T	rs76110051		TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP8B4	79895	broad.mit.edu	37	15	50168506	50168506	+	Missense_Mutation	SNP	G	T	T			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATRNL1	26033	broad.mit.edu	37	10	117024849	117024849	+	Intron	DEL	C	-	-			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BTD	686	broad.mit.edu	37	3	15687019	15687019	+	3'UTR	SNP	G	T	T			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BTNL9	153579	broad.mit.edu	37	5	180477326	180477326	+	Missense_Mutation	SNP	T	A	A			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C11orf35	256329	broad.mit.edu	37	11	558709	558709	+	Missense_Mutation	SNP	T	G	G			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C14orf145	145508	broad.mit.edu	37	14	80971348	80971348	+	Silent	SNP	G	A	A			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C14orf145	145508	broad.mit.edu	37	14	81304608	81304608	+	Missense_Mutation	SNP	C	A	A			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C16orf62	57020	broad.mit.edu	37	16	19680369	19680369	+	Intron	SNP	C	T	T			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C18orf34	374864	broad.mit.edu	37	18	30926060	30926060	+	Intron	SNP	G	A	A			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C20orf185	359710	broad.mit.edu	37	20	31649504	31649504	+	Intron	SNP	G	T	T	rs145528176	by1000genomes	TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C5orf42	65250	broad.mit.edu	37	5	37153742	37153742	+	Intron	SNP	A	G	G			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C6	729	broad.mit.edu	37	5	41196041	41196041	+	Intron	SNP	C	A	A			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C7	730	broad.mit.edu	37	5	40965101	40965101	+	Intron	SNP	C	A	A			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C9orf173	441476	broad.mit.edu	37	9	140146898	140146898	+	Missense_Mutation	SNP	G	A	A			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C9orf30	91283	broad.mit.edu	37	9	103213106	103213106	+	Missense_Mutation	SNP	A	G	G			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1B	774	broad.mit.edu	37	9	140941316	140941316	+	Intron	SNP	G	T	T			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA2D1	781	broad.mit.edu	37	7	81579632	81579632	+	3'UTR	SNP	G	A	A	rs148861982	by1000genomes	TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CADM3	57863	broad.mit.edu	37	1	159169442	159169442	+	Intron	SNP	C	A	A			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CAMK1D	57118	broad.mit.edu	37	10	12802848	12802848	+	Intron	SNP	C	A	A			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CAMKK1	84254	broad.mit.edu	37	17	3773207	3773207	+	Intron	SNP	G	A	A			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CAPRIN2	65981	broad.mit.edu	37	12	30869284	30869284	+	Intron	SNP	G	A	A			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CARS	833	broad.mit.edu	37	11	3023561	3023561	+	Intron	SNP	G	T	T			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CASP1	834	broad.mit.edu	37	11	104966937	104966937	+	Intron	SNP	C	A	A			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CASR	846	broad.mit.edu	37	3	121994653	121994653	+	Intron	SNP	C	A	A			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CBLB	868	broad.mit.edu	37	3	105453050	105453050	+	Intron	SNP	A	T	T			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CBLB	868	broad.mit.edu	37	3	105572073	105572073	+	Intron	SNP	C	G	G			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CC2D1A	54862	broad.mit.edu	37	19	14031829	14031829	+	Intron	SNP	G	T	T			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC109B	55013	broad.mit.edu	37	4	110595237	110595237	+	Intron	SNP	G	A	A			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC148	130940	broad.mit.edu	37	2	159035632	159035632	+	Intron	SNP	T	A	A			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC77	84318	broad.mit.edu	37	12	541000	541000	+	Intron	SNP	A	G	G			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCNDBP1	23582	broad.mit.edu	37	15	43478086	43478086	+	Intron	SNP	G	T	T			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD200R1L	344807	broad.mit.edu	37	3	112538752	112538752	+	Intron	SNP	C	A	A			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD99L2	83692	broad.mit.edu	37	X	149964083	149964083	+	Intron	SNP	C	A	A			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDC25C	995	broad.mit.edu	37	5	137622831	137622831	+	Intron	SNP	C	A	A			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH20	28316	broad.mit.edu	37	18	59217106	59217106	+	Intron	SNP	T	A	A			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH24	64403	broad.mit.edu	37	14	23523778	23523778	+	Missense_Mutation	SNP	C	T	T			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDK5R2	8941	broad.mit.edu	37	2	219824752	219824752	+	Silent	SNP	G	T	T			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CENPJ	55835	broad.mit.edu	37	13	25466682	25466682	+	Intron	SNP	C	A	A			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CEP135	9662	broad.mit.edu	37	4	56886973	56886973	+	Intron	SNP	C	T	T			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CEP250	11190	broad.mit.edu	37	20	34061602	34061602	+	Intron	SNP	G	C	C			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CFC1B	653275	broad.mit.edu	37	2	131356232	131356232	+	Missense_Mutation	SNP	G	T	T			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CFHR1	3078	broad.mit.edu	37	1	196794714	196794714	+	Nonsense_Mutation	SNP	G	T	T			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHRNB3	1142	broad.mit.edu	37	8	42552877	42552877	+	Intron	SNP	G	T	T			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHRND	1144	broad.mit.edu	37	2	233391499	233391499	+	Intron	SNP	G	T	T			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTN6	27255	broad.mit.edu	37	3	1413906	1413922	+	Intron	DEL	AGTATTCAGAAATATGT	-	-	rs9869771	by1000genomes	TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTNAP2	26047	broad.mit.edu	37	7	146818081	146818081	+	Missense_Mutation	SNP	G	C	C			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTNAP4	85445	broad.mit.edu	37	16	76501258	76501258	+	Missense_Mutation	SNP	A	T	T			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTNAP4	85445	broad.mit.edu	37	16	76555337	76555337	+	Intron	SNP	C	A	A			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTNAP4	85445	broad.mit.edu	37	16	76555339	76555339	+	Intron	SNP	A	T	T			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COG6	57511	broad.mit.edu	37	13	40273554	40273554	+	Intron	SNP	G	T	T			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL11A1	1301	broad.mit.edu	37	1	103480084	103480084	+	Missense_Mutation	SNP	T	C	C			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL11A1	1301	broad.mit.edu	37	1	103496663	103496663	+	Intron	SNP	G	T	T			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL3A1	1281	broad.mit.edu	37	2	189859867	189859867	+	Intron	SNP	C	A	A			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL4A2	1284	broad.mit.edu	37	13	111156436	111156436	+	Intron	SNP	C	A	A	rs373463		TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL5A3	50509	broad.mit.edu	37	19	10084575	10084575	+	Intron	DEL	G	-	-			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL6A3	1293	broad.mit.edu	37	2	238244913	238244913	+	Missense_Mutation	SNP	G	A	A			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COX16	51241	broad.mit.edu	37	14	70793067	70793067	+	Nonsense_Mutation	SNP	T	A	A			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPA1	1357	broad.mit.edu	37	7	130025024	130025024	+	Nonsense_Mutation	SNP	C	G	G			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPT1A	1374	broad.mit.edu	37	11	68582656	68582656	+	Intron	SNP	C	T	T			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CRIP3	401262	broad.mit.edu	37	6	43275371	43275371	+	Missense_Mutation	SNP	C	A	A			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSHL1	1444	broad.mit.edu	37	17	61988473	61988473	+	Intron	SNP	C	T	T			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD1	64478	broad.mit.edu	37	8	3038645	3038645	+	Missense_Mutation	SNP	G	T	T			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD3	114788	broad.mit.edu	37	8	113421166	113421166	+	Missense_Mutation	SNP	G	A	A			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD3	114788	broad.mit.edu	37	8	113484912	113484912	+	Missense_Mutation	SNP	C	A	A			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSRP2BP	57325	broad.mit.edu	37	20	18131617	18131617	+	Intron	SNP	A	T	T			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CT45A1	541466	broad.mit.edu	37	X	134856857	134856857	+	3'UTR	SNP	G	T	T			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTNNA3	29119	broad.mit.edu	37	10	67726513	67726513	+	Intron	SNP	G	T	T			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CXorf22	170063	broad.mit.edu	37	X	36007662	36007662	+	3'UTR	SNP	G	T	T			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP27C1	339761	broad.mit.edu	37	2	127952938	127952938	+	Missense_Mutation	SNP	A	G	G			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYSLTR2	57105	broad.mit.edu	37	13	49281044	49281044	+	Missense_Mutation	SNP	T	A	A			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DACH1	1602	broad.mit.edu	37	13	72049685	72049685	+	Intron	SNP	C	T	T			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DAPK1	1612	broad.mit.edu	37	9	90322342	90322342	+	3'UTR	SNP	A	T	T			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCAF12L1	139170	broad.mit.edu	37	X	125685455	125685455	+	Silent	SNP	G	T	T	rs149056465	byFrequency	TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCLRE1B	64858	broad.mit.edu	37	1	114449826	114449826	+	Intron	SNP	G	T	T	rs76069885		TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DDX42	11325	broad.mit.edu	37	17	61886045	61886045	+	Intron	SNP	A	G	G			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DDX4	54514	broad.mit.edu	37	5	55059013	55059013	+	Missense_Mutation	SNP	G	T	T			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DHX8	1659	broad.mit.edu	37	17	41601039	41601039	+	Missense_Mutation	SNP	C	T	T			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DMBT1	1755	broad.mit.edu	37	10	124380532	124380532	+	Intron	SNP	C	G	G			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH3	55567	broad.mit.edu	37	16	20963677	20963677	+	Intron	SNP	T	C	C			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH9	1770	broad.mit.edu	37	17	11865334	11865334	+	Missense_Mutation	SNP	G	C	C			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAI1	27019	broad.mit.edu	37	9	34500817	34500817	+	Silent	SNP	G	T	T			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAJB11	51726	broad.mit.edu	37	3	186299261	186299261	+	Silent	SNP	A	G	G			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAJB8	165721	broad.mit.edu	37	3	128181682	128181682	+	Missense_Mutation	SNP	G	T	T			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAJC18	202052	broad.mit.edu	37	5	138773172	138773172	+	Missense_Mutation	SNP	C	A	A			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DOCK9	23348	broad.mit.edu	37	13	99505815	99505819	+	Intron	DEL	GGGAG	-	-			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DPEP2	64174	broad.mit.edu	37	16	68036931	68036931	+	5'Flank	SNP	C	T	T			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DPY19L3	147991	broad.mit.edu	37	19	32949605	32949605	+	Intron	SNP	A	C	C			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DRD5	1816	broad.mit.edu	37	4	9784739	9784739	+	Missense_Mutation	SNP	C	G	G			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DSG1	1828	broad.mit.edu	37	18	28906930	28906930	+	Missense_Mutation	SNP	G	A	A			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DUXA	503835	broad.mit.edu	37	19	57672279	57672279	+	Intron	SNP	G	A	A			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DVL3	1857	broad.mit.edu	37	3	183885564	183885565	+	Intron	INS	-	T	T			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DVL3	1857	broad.mit.edu	37	3	183885808	183885808	+	Missense_Mutation	SNP	A	T	T			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
E2F1	1869	broad.mit.edu	37	20	32267639	32267639	+	Missense_Mutation	SNP	C	T	T			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EFCAB4B	84766	broad.mit.edu	37	12	3805981	3805981	+	Missense_Mutation	SNP	C	G	G			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EFHB	151651	broad.mit.edu	37	3	19974919	19974919	+	Missense_Mutation	SNP	G	C	C			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EFNB2	1948	broad.mit.edu	37	13	107148346	107148346	+	Intron	SNP	A	T	T			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ENPP1	5167	broad.mit.edu	37	6	132148042	132148042	+	Intron	SNP	G	T	T			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EP300	2033	broad.mit.edu	37	22	41513148	41513148	+	Intron	SNP	G	T	T			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPHA3	2042	broad.mit.edu	37	3	89157043	89157043	+	Intron	SNP	A	T	T			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPHA4	2043	broad.mit.edu	37	2	222307544	222307544	+	Intron	SNP	C	T	T			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPHA5	2044	broad.mit.edu	37	4	66467674	66467674	+	Missense_Mutation	SNP	C	A	A			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPHA6	285220	broad.mit.edu	37	3	96533570	96533570	+	Missense_Mutation	SNP	T	A	A			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPHB1	2047	broad.mit.edu	37	3	134967276	134967276	+	Missense_Mutation	SNP	C	G	G			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ERBB3	2065	broad.mit.edu	37	12	56479039	56479039	+	Intron	SNP	A	T	T			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ERN1	2081	broad.mit.edu	37	17	62175545	62175545	+	Silent	SNP	C	T	T			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ESR2	2100	broad.mit.edu	37	14	64727071	64727071	+	Intron	SNP	C	A	A			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EXOC7	23265	broad.mit.edu	37	17	74079892	74079892	+	Intron	SNP	G	A	A			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM129A	116496	broad.mit.edu	37	1	184792550	184792550	+	Intron	SNP	G	T	T	rs144981050	by1000genomes	TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM5C	339479	broad.mit.edu	37	1	190423729	190423729	+	Intron	SNP	G	T	T			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM71C	196472	broad.mit.edu	37	12	100042185	100042185	+	Missense_Mutation	SNP	C	A	A			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FANCA	2175	broad.mit.edu	37	16	89874755	89874755	+	Silent	SNP	C	A	A	rs143314367	byFrequency	TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FANCD2	2177	broad.mit.edu	37	3	10106488	10106488	+	Silent	SNP	C	T	T			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FARS2	10667	broad.mit.edu	37	6	5404731	5404731	+	Intron	SNP	G	T	T			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAT3	120114	broad.mit.edu	37	11	92531675	92531675	+	Silent	SNP	A	T	T			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBN1	2200	broad.mit.edu	37	15	48713016	48713016	+	Intron	SNP	C	A	A			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBN2	2201	broad.mit.edu	37	5	127627262	127627262	+	Missense_Mutation	SNP	G	T	T			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBXL7	23194	broad.mit.edu	37	5	15928571	15928571	+	Missense_Mutation	SNP	G	C	C			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FCN2	2220	broad.mit.edu	37	9	137776490	137776490	+	Intron	SNP	G	T	T			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FGD1	2245	broad.mit.edu	37	X	54497132	54497132	+	Silent	SNP	G	T	T	rs113204374		TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FGD3	89846	broad.mit.edu	37	9	95797636	95797636	+	Missense_Mutation	SNP	G	T	T			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FKBP6	8468	broad.mit.edu	37	7	72755414	72755415	+	Intron	DNP	TG	AT	AT			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FKBP6	8468	broad.mit.edu	37	7	72756838	72756838	+	Nonsense_Mutation	SNP	G	T	T			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLCN	201163	broad.mit.edu	37	17	17129689	17129689	+	Intron	SNP	C	T	T			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLJ26850	400710	broad.mit.edu	37	19	50562736	50562736	+	Intron	SNP	A	C	C			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLJ26850	400710	broad.mit.edu	37	19	50562738	50562738	+	Intron	SNP	G	C	C			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLJ40504	284085	broad.mit.edu	37	17	26604229	26604229	+	Silent	SNP	C	A	A			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLT1	2321	broad.mit.edu	37	13	28897159	28897159	+	Intron	SNP	A	G	G			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FMO4	2329	broad.mit.edu	37	1	171308806	171308806	+	Intron	SNP	G	T	T			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FNDC7	163479	broad.mit.edu	37	1	109271373	109271373	+	Missense_Mutation	SNP	C	G	G			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FOLH1B	219595	broad.mit.edu	37	11	89392961	89392961	+	Intron	SNP	T	A	A			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FOLH1	2346	broad.mit.edu	37	11	49214305	49214305	+	Intron	SNP	C	A	A			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FOXP2	93986	broad.mit.edu	37	7	114271723	114271723	+	Silent	SNP	T	A	A			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FRG1B	284802	broad.mit.edu	37	20	29632625	29632625	+	Intron	SNP	G	A	A			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FRG1	2483	broad.mit.edu	37	4	190882991	190882991	+	Missense_Mutation	SNP	G	A	A			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FRMPD1	22844	broad.mit.edu	37	9	37729897	37729897	+	Intron	SNP	G	T	T			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FRMPD1	22844	broad.mit.edu	37	9	37732276	37732276	+	Intron	SNP	A	T	T			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FUK	197258	broad.mit.edu	37	16	70503108	70503108	+	Silent	SNP	G	A	A			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABRB3	2562	broad.mit.edu	37	15	26793116	26793116	+	Missense_Mutation	SNP	G	T	T			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABRB3	2562	broad.mit.edu	37	15	27128271	27128271	+	Intron	SNP	G	A	A			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABRG1	2565	broad.mit.edu	37	4	46043115	46043115	+	Nonsense_Mutation	SNP	C	A	A			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GARNL3	84253	broad.mit.edu	37	9	130147292	130147292	+	Intron	SNP	C	A	A			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GBA3	57733	broad.mit.edu	37	4	22748924	22748924	+	Missense_Mutation	SNP	G	T	T			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GCFC1	94104	broad.mit.edu	37	21	34117919	34117919	+	Silent	SNP	G	A	A			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GCK	2645	broad.mit.edu	37	7	44189441	44189441	+	Silent	SNP	C	T	T			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GDA	9615	broad.mit.edu	37	9	74863360	74863360	+	3'UTR	SNP	G	T	T			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GDF5	8200	broad.mit.edu	37	20	33981820	33981820	+	Intron	SNP	C	A	A			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GGA1	26088	broad.mit.edu	37	22	38016148	38016148	+	Intron	SNP	G	T	T			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLI2	2736	broad.mit.edu	37	2	121741979	121741979	+	Intron	SNP	G	A	A			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLYATL2	219970	broad.mit.edu	37	11	58601981	58601981	+	Missense_Mutation	SNP	T	C	C			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GNAZ	2781	broad.mit.edu	37	22	23438217	23438217	+	Missense_Mutation	SNP	G	T	T			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GOLGA8A	23015	broad.mit.edu	37	15	34678733	34678733	+	Intron	SNP	C	G	G			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPC3	2719	broad.mit.edu	37	X	133086984	133086984	+	Intron	SNP	G	T	T			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPLD1	2822	broad.mit.edu	37	6	24466972	24466972	+	Missense_Mutation	SNP	C	T	T			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPLD1	2822	broad.mit.edu	37	6	24467100	24467100	+	Intron	SNP	C	T	T			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPLD1	2822	broad.mit.edu	37	6	24467377	24467377	+	Intron	SNP	C	T	T			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPLD1	2822	broad.mit.edu	37	6	24467399	24467399	+	Missense_Mutation	SNP	C	T	T			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPM6A	2823	broad.mit.edu	37	4	176883577	176883577	+	Intron	SNP	A	T	T			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR112	139378	broad.mit.edu	37	X	135431775	135431775	+	Silent	SNP	C	T	T			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR148	344561	broad.mit.edu	37	2	131486901	131486901	+	Silent	SNP	G	T	T			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR156	165829	broad.mit.edu	37	3	119911990	119911990	+	Intron	SNP	C	A	A			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPRIN3	285513	broad.mit.edu	37	4	90170270	90170270	+	Missense_Mutation	SNP	C	G	G			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPX5	2880	broad.mit.edu	37	6	28501750	28501750	+	Missense_Mutation	SNP	C	A	A			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRAP2	9402	broad.mit.edu	37	22	40365549	40365549	+	Intron	SNP	G	C	C			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GREB1	9687	broad.mit.edu	37	2	11733003	11733004	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRIA2	2891	broad.mit.edu	37	4	158257521	158257521	+	Intron	SNP	C	G	G			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRK6	2870	broad.mit.edu	37	5	176860330	176860330	+	Intron	SNP	C	T	T			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GSTM5	2949	broad.mit.edu	37	1	110258523	110258523	+	Intron	SNP	C	A	A			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GTPBP10	85865	broad.mit.edu	37	7	90003668	90003668	+	Missense_Mutation	SNP	G	T	T			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GXYLT2	727936	broad.mit.edu	37	3	72978358	72978358	+	Intron	SNP	T	C	C			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HAUS6	54801	broad.mit.edu	37	9	19082957	19082957	+	Missense_Mutation	SNP	C	A	A			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HCN1	348980	broad.mit.edu	37	5	45396799	45396799	+	Missense_Mutation	SNP	C	A	A			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HCN4	10021	broad.mit.edu	37	15	73624438	73624438	+	Intron	SNP	G	A	A			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HDAC9	9734	broad.mit.edu	37	7	18767185	18767185	+	Intron	SNP	C	A	A			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HEATR4	399671	broad.mit.edu	37	14	73988938	73988938	+	Intron	SNP	G	A	A			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HEATR7B2	133558	broad.mit.edu	37	5	41049501	41049501	+	Missense_Mutation	SNP	G	T	T			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HELLS	3070	broad.mit.edu	37	10	96342622	96342622	+	Intron	SNP	G	A	A			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HERC2	8924	broad.mit.edu	37	15	28465959	28465959	+	Intron	SNP	A	G	G			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HERPUD2	64224	broad.mit.edu	37	7	35733804	35733804	+	Missense_Mutation	SNP	G	A	A			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HIAT1	64645	broad.mit.edu	37	1	100544124	100544124	+	Intron	SNP	C	A	A			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HIST2H2AC	8338	broad.mit.edu	37	1	149858739	149858739	+	Missense_Mutation	SNP	G	T	T			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HK3	3101	broad.mit.edu	37	5	176314590	176314590	+	Missense_Mutation	SNP	C	A	A			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HLA-G	3135	broad.mit.edu	37	6	29795820	29795820	+	Intron	SNP	C	T	T	rs115525403	by1000genomes	TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HLA-G	3135	broad.mit.edu	37	6	29797816	29797816	+	Intron	SNP	C	A	A			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HNRNPF	3185	broad.mit.edu	37	10	43882166	43882166	+	Silent	SNP	G	A	A			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HOXB3	3213	broad.mit.edu	37	17	46627830	46627830	+	Missense_Mutation	SNP	C	T	T			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HS3ST4	9951	broad.mit.edu	37	16	26043726	26043726	+	Intron	SNP	T	A	A			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HSD17B4	3295	broad.mit.edu	37	5	118824886	118824886	+	Splice_Site	SNP	G	T	T			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IARS2	55699	broad.mit.edu	37	1	220307795	220307795	+	Missense_Mutation	SNP	G	T	T			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ICOS	29851	broad.mit.edu	37	2	204822744	204822744	+	Intron	SNP	G	T	T			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IGDCC4	57722	broad.mit.edu	37	15	65702515	65702515	+	Splice_Site	SNP	C	A	A			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IGFBP7	3490	broad.mit.edu	37	4	57938864	57938864	+	Intron	SNP	C	A	A			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL16	3603	broad.mit.edu	37	15	81517840	81517840	+	Missense_Mutation	SNP	G	C	C			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL1F10	84639	broad.mit.edu	37	2	113831983	113831983	+	Missense_Mutation	SNP	G	A	A			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL20RA	53832	broad.mit.edu	37	6	137323091	137323091	+	Silent	SNP	C	T	T			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
INHBA	3624	broad.mit.edu	37	7	41729879	41729879	+	Missense_Mutation	SNP	G	C	C			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
INPP5F	22876	broad.mit.edu	37	10	121551579	121551579	+	Intron	SNP	G	T	T			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
INPPL1	3636	broad.mit.edu	37	11	71949145	71949145	+	Missense_Mutation	SNP	G	T	T			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGA2	3673	broad.mit.edu	37	5	52347218	52347218	+	Intron	SNP	A	T	T			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGA6	3655	broad.mit.edu	37	2	173337487	173337487	+	Intron	SNP	C	T	T	rs151216623	by1000genomes	TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGAX	3687	broad.mit.edu	37	16	31383838	31383838	+	Intron	SNP	C	A	A			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGBL1	9358	broad.mit.edu	37	13	102366764	102366764	+	Intron	SNP	G	A	A			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
JAKMIP1	152789	broad.mit.edu	37	4	6058531	6058531	+	Intron	SNP	G	T	T			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
JMJD7-PLA2G4B	8681	broad.mit.edu	37	15	42128462	42128462	+	5'Flank	SNP	G	T	T			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KAT2A	2648	broad.mit.edu	37	17	40272593	40272593	+	Intron	DEL	C	-	-	rs113316904		TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNB2	9312	broad.mit.edu	37	8	73480430	73480430	+	Missense_Mutation	SNP	G	A	A			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNH7	90134	broad.mit.edu	37	2	163374208	163374208	+	Intron	SNP	T	C	C			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNJ5	3762	broad.mit.edu	37	11	128786413	128786413	+	Missense_Mutation	SNP	C	A	A			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNK10	54207	broad.mit.edu	37	14	88693990	88693990	+	Intron	SNP	G	T	T			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KDM3B	51780	broad.mit.edu	37	5	137721771	137721771	+	Missense_Mutation	SNP	G	T	T			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KDM4C	23081	broad.mit.edu	37	9	6834953	6834953	+	Intron	SNP	G	T	T			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KDR	3791	broad.mit.edu	37	4	55948682	55948682	+	Intron	SNP	A	G	G			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KDR	3791	broad.mit.edu	37	4	55980229	55980229	+	Intron	SNP	G	T	T			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KEAP1	9817	broad.mit.edu	37	19	10602719	10602719	+	Nonsense_Mutation	SNP	T	A	A			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA0494	9813	broad.mit.edu	37	1	47150235	47150235	+	Missense_Mutation	SNP	C	T	T			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA0664	23277	broad.mit.edu	37	17	2597328	2597328	+	Silent	SNP	G	A	A			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA0922	23240	broad.mit.edu	37	4	154547494	154547494	+	Intron	SNP	G	C	C			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1033	23325	broad.mit.edu	37	12	105538144	105538144	+	Missense_Mutation	SNP	G	A	A			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1210	57481	broad.mit.edu	37	X	118222823	118222823	+	Silent	SNP	C	A	A			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1598	57698	broad.mit.edu	37	10	118671181	118671181	+	Intron	SNP	G	A	A			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF15	56992	broad.mit.edu	37	3	44856678	44856678	+	Intron	SNP	G	A	A			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF25	3834	broad.mit.edu	37	6	168434609	168434609	+	Missense_Mutation	SNP	G	C	C			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF2B	84643	broad.mit.edu	37	17	51900917	51900917	+	Missense_Mutation	SNP	G	T	T	rs149901637		TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIR2DL1	3802	broad.mit.edu	37	19	55294945	55294945	+	Silent	SNP	G	A	A	rs143586661	byFrequency	TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLF5	688	broad.mit.edu	37	13	73649769	73649769	+	Intron	SNP	G	T	T			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLHL14	57565	broad.mit.edu	37	18	30350335	30350335	+	Missense_Mutation	SNP	C	A	A			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRAS	3845	broad.mit.edu	37	12	25398284	25398284	+	Missense_Mutation	SNP	C	G	G	rs121913529		TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRT35	3886	broad.mit.edu	37	17	39633213	39633213	+	Intron	SNP	C	A	A			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRT36	8689	broad.mit.edu	37	17	39642597	39642597	+	3'UTR	SNP	A	T	T			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMB1	3912	broad.mit.edu	37	7	107605017	107605017	+	Missense_Mutation	SNP	C	G	G			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMB4	22798	broad.mit.edu	37	7	107708514	107708514	+	Missense_Mutation	SNP	C	T	T			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LANCL2	55915	broad.mit.edu	37	7	55467749	55467749	+	Silent	SNP	G	C	C			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LARP1	23367	broad.mit.edu	37	5	154183157	154183157	+	Missense_Mutation	SNP	C	A	A			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LARS	51520	broad.mit.edu	37	5	145562167	145562167	+	5'UTR	SNP	A	G	G			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LBR	3930	broad.mit.edu	37	1	225600352	225600352	+	Intron	DEL	A	-	-			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LCAT	3931	broad.mit.edu	37	16	67976568	67976568	+	Intron	SNP	A	T	T			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LCP2	3937	broad.mit.edu	37	5	169701312	169701312	+	Nonsense_Mutation	SNP	G	T	T			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LDLR	3949	broad.mit.edu	37	19	11230871	11230871	+	Missense_Mutation	SNP	A	T	T			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LGR6	59352	broad.mit.edu	37	1	202287787	202287787	+	Missense_Mutation	SNP	T	C	C			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LILRA1	11024	broad.mit.edu	37	19	55107243	55107244	+	Missense_Mutation	DNP	GC	AA	AA			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LILRA5	353514	broad.mit.edu	37	19	54818597	54818598	+	3'UTR	DNP	CC	AA	AA			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LMOD2	442721	broad.mit.edu	37	7	123302395	123302395	+	Missense_Mutation	SNP	C	A	A			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC100130331	100130331	broad.mit.edu	37	1	238090871	238090871	+	RNA	SNP	A	T	T			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC220594	220594	broad.mit.edu	37	17	18422758	18422758	+	Intron	SNP	T	C	C			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC341056	341056	broad.mit.edu	37	11	122888523	122888523	+	RNA	SNP	G	T	T			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC401010	401010	broad.mit.edu	37	2	132201339	132201339	+	Silent	SNP	G	T	T			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC651250	651250	broad.mit.edu	37	17	66122603	66122603	+	RNA	SNP	C	A	A			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LONP2	83752	broad.mit.edu	37	16	48304118	48304118	+	Missense_Mutation	SNP	C	G	G			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LPAL2	80350	broad.mit.edu	37	6	160912245	160912245	+	Intron	SNP	T	C	C			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRFN5	145581	broad.mit.edu	37	14	42356688	42356688	+	Missense_Mutation	SNP	C	A	A			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC14	9684	broad.mit.edu	37	8	145749479	145749479	+	3'UTR	SNP	C	T	T			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRK2	120892	broad.mit.edu	37	12	40709161	40709161	+	Intron	SNP	G	A	A			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRTM4	80059	broad.mit.edu	37	2	77745490	77745490	+	Missense_Mutation	SNP	C	A	A			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LYST	1130	broad.mit.edu	37	1	235902104	235902104	+	Intron	SNP	C	A	A			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LYZL2	119180	broad.mit.edu	37	10	30915049	30915049	+	Missense_Mutation	SNP	G	T	T			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MACF1	23499	broad.mit.edu	37	1	39889968	39889968	+	Intron	SNP	A	G	G			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MADD	8567	broad.mit.edu	37	11	47311393	47311393	+	Intron	SNP	C	A	A			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAGEA3	4102	broad.mit.edu	37	X	151935925	151935925	+	Missense_Mutation	SNP	C	A	A			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAGEB16	139604	broad.mit.edu	37	X	35820648	35820648	+	Missense_Mutation	SNP	C	T	T			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MARCH10	162333	broad.mit.edu	37	17	60802397	60802397	+	Missense_Mutation	SNP	G	T	T			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MARCH7	64844	broad.mit.edu	37	2	160585754	160585754	+	Intron	SNP	G	A	A			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MARK2	2011	broad.mit.edu	37	11	63665608	63665608	+	Intron	SNP	G	T	T			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MC3R	4159	broad.mit.edu	37	20	54823836	54823836	+	5'UTR	SNP	G	A	A			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MECOM	2122	broad.mit.edu	37	3	168840365	168840365	+	Intron	SNP	T	C	C			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MED10	84246	broad.mit.edu	37	5	6378709	6378709	+	5'Flank	SNP	G	A	A			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MEG3	55384	broad.mit.edu	37	14	101318660	101318660	+	Intron	SNP	G	T	T			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MELK	9833	broad.mit.edu	37	9	36665487	36665488	+	Frame_Shift_Del	DEL	TA	-	-			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MGAT4A	11320	broad.mit.edu	37	2	99260596	99260596	+	Intron	SNP	C	A	A			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MIR1274A	100302199	broad.mit.edu	37	5	41475780	41475780	+	RNA	SNP	C	A	A			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MKI67	4288	broad.mit.edu	37	10	129905763	129905763	+	Silent	SNP	A	G	G			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MLLT10	8028	broad.mit.edu	37	10	21914613	21914613	+	Intron	SNP	C	T	T			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MMP16	4325	broad.mit.edu	37	8	89086945	89086945	+	Missense_Mutation	SNP	G	T	T			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MRFAP1	93621	broad.mit.edu	37	4	6642869	6642869	+	Missense_Mutation	SNP	G	A	A			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MRPL35	51318	broad.mit.edu	37	2	86437740	86437740	+	Silent	SNP	C	T	T	rs1052060		TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTR	4548	broad.mit.edu	37	1	237057790	237057790	+	Missense_Mutation	SNP	C	A	A			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC5B	727897	broad.mit.edu	37	11	1156351	1156351	+	Intron	SNP	T	A	A			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC5B	727897	broad.mit.edu	37	11	1159475	1159475	+	Intron	SNP	C	A	A			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC6	4588	broad.mit.edu	37	11	1019490	1019490	+	Missense_Mutation	SNP	G	T	T			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUSK	4593	broad.mit.edu	37	9	113547037	113547037	+	Intron	SNP	C	A	A			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH13	8735	broad.mit.edu	37	17	10249061	10249061	+	Intron	SNP	C	A	A			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH13	8735	broad.mit.edu	37	17	10263213	10263213	+	Intron	SNP	G	T	T			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH2	4620	broad.mit.edu	37	17	10435205	10435205	+	Missense_Mutation	SNP	C	A	A			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH2	4620	broad.mit.edu	37	17	10440622	10440622	+	Missense_Mutation	SNP	C	A	A			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH3	4621	broad.mit.edu	37	17	10552068	10552068	+	Intron	SNP	C	A	A			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH4	4622	broad.mit.edu	37	17	10355109	10355109	+	Intron	SNP	G	T	T			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO3B	140469	broad.mit.edu	37	2	171458104	171458104	+	Intron	SNP	C	G	G			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO7B	4648	broad.mit.edu	37	2	128324318	128324318	+	Missense_Mutation	SNP	A	G	G			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYOT	9499	broad.mit.edu	37	5	137217708	137217708	+	Missense_Mutation	SNP	C	A	A			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NAALADL2	254827	broad.mit.edu	37	3	175520848	175520848	+	Missense_Mutation	SNP	G	T	T			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NALCN	259232	broad.mit.edu	37	13	101777019	101777019	+	Missense_Mutation	SNP	A	T	T			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NAP1L1	4673	broad.mit.edu	37	12	76462573	76462573	+	Intron	SNP	C	A	A			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBPF10	100132406	broad.mit.edu	37	1	145601447	145601447	+	Intron	SNP	C	A	A			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBPF22P	285622	broad.mit.edu	37	5	85582808	85582808	+	Intron	SNP	T	A	A			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBPF9	400818	broad.mit.edu	37	1	144828879	144828879	+	Intron	SNP	A	G	G			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCAPD2	9918	broad.mit.edu	37	12	6637493	6637493	+	Missense_Mutation	SNP	C	A	A			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCAPG2	54892	broad.mit.edu	37	7	158468325	158468325	+	Silent	SNP	C	T	T			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCKAP5	344148	broad.mit.edu	37	2	133541745	133541745	+	Missense_Mutation	SNP	C	A	A			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCOR1	9611	broad.mit.edu	37	17	16068459	16068459	+	Missense_Mutation	SNP	C	T	T			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NELL2	4753	broad.mit.edu	37	12	45209816	45209816	+	Silent	SNP	G	T	T			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NEUROD4	58158	broad.mit.edu	37	12	55421178	55421178	+	Missense_Mutation	SNP	C	G	G			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NFATC1	4772	broad.mit.edu	37	18	77211917	77211917	+	Intron	SNP	G	T	T			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NID2	22795	broad.mit.edu	37	14	52505531	52505531	+	Missense_Mutation	SNP	C	A	A			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NIPSNAP1	8508	broad.mit.edu	37	22	29957721	29957721	+	Intron	SNP	A	G	G			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLGN4X	57502	broad.mit.edu	37	X	6069150	6069150	+	Missense_Mutation	SNP	G	T	T			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLRP4	147945	broad.mit.edu	37	19	56370626	56370626	+	Intron	SNP	C	T	T			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLRP4	147945	broad.mit.edu	37	19	56392776	56392776	+	Intron	SNP	C	A	A			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NOTCH4	4855	broad.mit.edu	37	6	32178542	32178542	+	Missense_Mutation	SNP	C	A	A			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NPC1L1	29881	broad.mit.edu	37	7	44579150	44579150	+	Silent	SNP	C	T	T			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRCAM	4897	broad.mit.edu	37	7	107800925	107800925	+	Missense_Mutation	SNP	C	A	A			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRCAM	4897	broad.mit.edu	37	7	107820585	107820585	+	Intron	SNP	G	T	T			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRF1	4899	broad.mit.edu	37	7	129348982	129348982	+	Missense_Mutation	SNP	G	T	T			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NTRK1	4914	broad.mit.edu	37	1	156834152	156834152	+	Silent	SNP	C	A	A			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NUP35	129401	broad.mit.edu	37	2	184022342	184022342	+	Intron	SNP	A	T	T			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NUP93	9688	broad.mit.edu	37	16	56875616	56875616	+	Splice_Site	SNP	G	T	T			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OBSCN	84033	broad.mit.edu	37	1	228482069	228482069	+	Missense_Mutation	SNP	C	T	T			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OC90	729330	broad.mit.edu	37	8	133045310	133045310	+	Missense_Mutation	SNP	C	G	G			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OLFML1	283298	broad.mit.edu	37	11	7531000	7531000	+	Missense_Mutation	SNP	C	A	A			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OLIG3	167826	broad.mit.edu	37	6	137814889	137814889	+	Missense_Mutation	SNP	G	C	C			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR10J3	441911	broad.mit.edu	37	1	159284326	159284326	+	Missense_Mutation	SNP	C	T	T			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR10J5	127385	broad.mit.edu	37	1	159504984	159504984	+	Missense_Mutation	SNP	C	A	A			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR11L1	391189	broad.mit.edu	37	1	248004939	248004939	+	Missense_Mutation	SNP	G	T	T			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR12D2	26529	broad.mit.edu	37	6	29364696	29364696	+	Missense_Mutation	SNP	G	C	C			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR13D1	286365	broad.mit.edu	37	9	107457008	107457008	+	Missense_Mutation	SNP	C	A	A			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR13G1	441933	broad.mit.edu	37	1	247836300	247836300	+	Missense_Mutation	SNP	G	T	T			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2L1P	26247	broad.mit.edu	37	1	248153832	248153833	+	Frame_Shift_Ins	INS	-	G	G			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2M4	26245	broad.mit.edu	37	1	248402357	248402357	+	Missense_Mutation	SNP	A	T	T			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2M4	26245	broad.mit.edu	37	1	248402564	248402564	+	Missense_Mutation	SNP	T	A	A			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR51B2	79345	broad.mit.edu	37	11	5345219	5345219	+	Missense_Mutation	SNP	G	C	C			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR51G1	79324	broad.mit.edu	37	11	4944840	4944840	+	Missense_Mutation	SNP	C	A	A			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR51Q1	390061	broad.mit.edu	37	11	5443901	5443901	+	Silent	SNP	G	A	A			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR52A5	390054	broad.mit.edu	37	11	5153632	5153632	+	Missense_Mutation	SNP	G	A	A			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR5B3	441608	broad.mit.edu	37	11	58170161	58170161	+	Missense_Mutation	SNP	G	T	T			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR6C68	403284	broad.mit.edu	37	12	55886519	55886519	+	Missense_Mutation	SNP	C	A	A			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR6F1	343169	broad.mit.edu	37	1	247876030	247876030	+	Frame_Shift_Del	DEL	G	-	-			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR7A17	26333	broad.mit.edu	37	19	14991993	14991993	+	Missense_Mutation	SNP	T	A	A			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR8B8	26493	broad.mit.edu	37	11	124310257	124310257	+	Missense_Mutation	SNP	C	A	A			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR8H2	390151	broad.mit.edu	37	11	55872386	55872386	+	5'Flank	SNP	G	T	T			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR8J3	81168	broad.mit.edu	37	11	55904317	55904317	+	Missense_Mutation	SNP	C	A	A			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
P2RX5	5026	broad.mit.edu	37	17	3591921	3591921	+	Nonsense_Mutation	SNP	T	A	A			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PACRG	135138	broad.mit.edu	37	6	163378549	163378549	+	Intron	SNP	C	A	A			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAK6	56924	broad.mit.edu	37	15	40568120	40568120	+	Intron	SNP	C	T	T			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAPPA2	60676	broad.mit.edu	37	1	176668278	176668278	+	Missense_Mutation	SNP	C	A	A			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAR4	347745	broad.mit.edu	37	15	25451272	25451272	+	RNA	SNP	G	T	T			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PARD3B	117583	broad.mit.edu	37	2	205986568	205986568	+	Nonsense_Mutation	SNP	C	T	T			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAX2	5076	broad.mit.edu	37	10	102569129	102569129	+	Intron	SNP	G	A	A			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH12	51294	broad.mit.edu	37	5	141324868	141324868	+	3'UTR	SNP	A	G	G			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH17	27253	broad.mit.edu	37	13	58298880	58298880	+	Missense_Mutation	SNP	G	T	T			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH7	5099	broad.mit.edu	37	4	30726120	30726120	+	Missense_Mutation	SNP	C	A	A			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHA3	56145	broad.mit.edu	37	5	140182490	140182490	+	Missense_Mutation	SNP	G	A	A			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHA5	56143	broad.mit.edu	37	5	140201397	140201397	+	Missense_Mutation	SNP	C	A	A			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHA7	56141	broad.mit.edu	37	5	140216113	140216113	+	Silent	SNP	G	T	T			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHB10	56126	broad.mit.edu	37	5	140574291	140574291	+	Silent	SNP	C	T	T			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCNT	5116	broad.mit.edu	37	21	47836155	47836156	+	Missense_Mutation	DNP	GC	TT	TT			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCNX	22990	broad.mit.edu	37	14	71443750	71443750	+	Missense_Mutation	SNP	G	T	T			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCNX	22990	broad.mit.edu	37	14	71502801	71502801	+	Missense_Mutation	SNP	A	G	G			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCOLCE2	26577	broad.mit.edu	37	3	142546352	142546352	+	Intron	SNP	G	A	A			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCSK1	5122	broad.mit.edu	37	5	95761717	95761717	+	Intron	SNP	C	T	T			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE6A	5145	broad.mit.edu	37	5	149245634	149245634	+	Intron	SNP	C	A	A			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDGFRA	5156	broad.mit.edu	37	4	54343299	54343299	+	Intron	SNP	G	A	A			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDGFRA	5156	broad.mit.edu	37	4	55131305	55131305	+	Intron	SNP	A	T	T			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDILT	204474	broad.mit.edu	37	16	20387364	20387364	+	Intron	SNP	C	T	T			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDILT	204474	broad.mit.edu	37	16	20395882	20395882	+	Intron	SNP	G	T	T			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDXDC1	23042	broad.mit.edu	37	16	15135095	15135095	+	Intron	SNP	A	C	C			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PGAP2	27315	broad.mit.edu	37	11	3845733	3845733	+	Intron	SNP	G	C	C			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PGM5	5239	broad.mit.edu	37	9	71114208	71114208	+	Silent	SNP	G	A	A			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PHF15	23338	broad.mit.edu	37	5	133914427	133914427	+	Missense_Mutation	SNP	C	T	T			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PHF17	79960	broad.mit.edu	37	4	129793096	129793096	+	Missense_Mutation	SNP	A	C	C			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PHF20L1	51105	broad.mit.edu	37	8	133858080	133858080	+	Missense_Mutation	SNP	C	T	T			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PHF5A	84844	broad.mit.edu	37	22	41864685	41864685	+	5'UTR	SNP	G	A	A			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIGO	84720	broad.mit.edu	37	9	35092983	35092983	+	Intron	DEL	C	-	-			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIK3C2A	5286	broad.mit.edu	37	11	17172170	17172170	+	Missense_Mutation	SNP	C	T	T			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIKFYVE	200576	broad.mit.edu	37	2	209197945	209197945	+	Intron	SNP	G	T	T			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIWIL3	440822	broad.mit.edu	37	22	25156026	25156026	+	Intron	SNP	C	A	A			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PKDCC	91461	broad.mit.edu	37	2	42284546	42284546	+	Intron	SNP	G	C	C			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLA2G4A	5321	broad.mit.edu	37	1	186919871	186919871	+	Intron	SNP	C	A	A	rs28395827		TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLA2G4A	5321	broad.mit.edu	37	1	186919898	186919898	+	Intron	SNP	A	G	G			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLCB4	5332	broad.mit.edu	37	20	9424733	9424733	+	Intron	SNP	C	A	A			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLS3	5358	broad.mit.edu	37	X	114874716	114874716	+	Intron	SNP	G	T	T			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLTP	5360	broad.mit.edu	37	20	44538801	44538801	+	Intron	SNP	C	A	A			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLXNA4	91584	broad.mit.edu	37	7	131831381	131831381	+	Missense_Mutation	SNP	C	A	A			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POLR3E	55718	broad.mit.edu	37	16	22335604	22335604	+	Intron	SNP	G	T	T			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POMT2	29954	broad.mit.edu	37	14	77746667	77746667	+	Intron	SNP	C	A	A			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPT2	9374	broad.mit.edu	37	6	32130715	32130715	+	Silent	SNP	T	G	G			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRELP	5549	broad.mit.edu	37	1	203453308	203453308	+	Intron	SNP	G	T	T			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PREX1	57580	broad.mit.edu	37	20	47295777	47295777	+	Intron	SNP	C	A	A			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRKCI	5584	broad.mit.edu	37	3	170011269	170011269	+	Missense_Mutation	SNP	C	A	A			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRKDC	5591	broad.mit.edu	37	8	48701799	48701799	+	Missense_Mutation	SNP	C	A	A			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRLHR	2834	broad.mit.edu	37	10	120353661	120353661	+	Missense_Mutation	SNP	C	T	T			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PROKR1	10887	broad.mit.edu	37	2	68882018	68882018	+	Silent	SNP	G	T	T			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PROM2	150696	broad.mit.edu	37	2	95953076	95953076	+	Intron	SNP	G	T	T			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PROS1	5627	broad.mit.edu	37	3	93617190	93617190	+	Intron	SNP	G	A	A			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSAT1	29968	broad.mit.edu	37	9	80943239	80943239	+	Intron	SNP	T	G	G			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSG6	5675	broad.mit.edu	37	19	43528992	43528992	+	Missense_Mutation	SNP	G	T	T			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSG9	5678	broad.mit.edu	37	19	43770475	43770475	+	Intron	SNP	G	T	T			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSMC2	5701	broad.mit.edu	37	7	102989095	102989095	+	Intron	SNP	G	T	T			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSMD12	5718	broad.mit.edu	37	17	65340942	65340942	+	Intron	SNP	G	A	A			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSPH	5723	broad.mit.edu	37	7	56169596	56169596	+	Intron	SNP	T	A	A			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPN21	11099	broad.mit.edu	37	14	88971582	88971582	+	Intron	SNP	G	C	C			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRD	5789	broad.mit.edu	37	9	8339047	8339047	+	Nonsense_Mutation	SNP	C	A	A			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRK	5796	broad.mit.edu	37	6	128388674	128388674	+	Missense_Mutation	SNP	C	A	A			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRT	11122	broad.mit.edu	37	20	40877313	40877313	+	Intron	SNP	C	A	A			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PXDN	7837	broad.mit.edu	37	2	1668737	1668737	+	Silent	SNP	G	T	T			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PYHIN1	149628	broad.mit.edu	37	1	158911926	158911926	+	Missense_Mutation	SNP	A	G	G			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
QRFPR	84109	broad.mit.edu	37	4	122261765	122261765	+	Missense_Mutation	SNP	C	A	A			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAB11FIP1	80223	broad.mit.edu	37	8	37735015	37735015	+	Silent	SNP	A	T	T			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAB11FIP3	9727	broad.mit.edu	37	16	511244	511244	+	Intron	SNP	C	T	T			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RABGAP1L	9910	broad.mit.edu	37	1	174245089	174245089	+	Intron	SNP	A	T	T			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAD54B	25788	broad.mit.edu	37	8	95390503	95390503	+	Missense_Mutation	SNP	T	C	C			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAP2C	57826	broad.mit.edu	37	X	131348488	131348488	+	Intron	SNP	C	A	A			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RASGEF1A	221002	broad.mit.edu	37	10	43694488	43694488	+	Intron	SNP	G	T	T			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RBP3	5949	broad.mit.edu	37	10	48386070	48386070	+	Intron	SNP	G	T	T			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RC3H1	149041	broad.mit.edu	37	1	173953758	173953758	+	Splice_Site	SNP	C	A	A			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RGL3	57139	broad.mit.edu	37	19	11508067	11508067	+	Intron	SNP	C	A	A			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RGS22	26166	broad.mit.edu	37	8	101008819	101008819	+	Intron	SNP	C	T	T			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RHOH	399	broad.mit.edu	37	4	40245040	40245040	+	Missense_Mutation	SNP	G	T	T			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RND3	390	broad.mit.edu	37	2	151328209	151328209	+	Missense_Mutation	SNP	G	T	T			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNF152	220441	broad.mit.edu	37	18	59483586	59483586	+	Silent	SNP	C	T	T			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ROS1	6098	broad.mit.edu	37	6	117609614	117609615	+	3'UTR	DEL	GA	-	-			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RP1	6101	broad.mit.edu	37	8	55539921	55539921	+	Missense_Mutation	SNP	C	A	A			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPL23P8	222901	broad.mit.edu	37	7	20867073	20867073	+	RNA	SNP	G	T	T			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RRP12	23223	broad.mit.edu	37	10	99140713	99140713	+	Intron	SNP	C	A	A			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RSPRY1	89970	broad.mit.edu	37	16	57247896	57247896	+	Intron	SNP	T	C	C			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RSRC2	65117	broad.mit.edu	37	12	122990039	122990039	+	3'UTR	SNP	T	A	A			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RUNDC2A	84127	broad.mit.edu	37	16	12145634	12145634	+	Intron	SNP	A	T	T			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR2	6262	broad.mit.edu	37	1	237843841	237843841	+	Missense_Mutation	SNP	G	T	T			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
S1PR1	1901	broad.mit.edu	37	1	101705235	101705236	+	Frame_Shift_Ins	INS	-	CC	CC			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SC5DL	6309	broad.mit.edu	37	11	121174140	121174140	+	Missense_Mutation	SNP	C	T	T			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCARB1	949	broad.mit.edu	37	12	125299664	125299664	+	Intron	SNP	T	A	A			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCN3A	6328	broad.mit.edu	37	2	165984179	165984179	+	Missense_Mutation	SNP	C	T	T			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEC61G	23480	broad.mit.edu	37	7	54827006	54827006	+	5'Flank	SNP	G	T	T			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEL1L3	23231	broad.mit.edu	37	4	25823805	25823805	+	Intron	SNP	A	G	G			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEMA6A	57556	broad.mit.edu	37	5	115783392	115783392	+	Silent	SNP	G	A	A			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEPT1	1731	broad.mit.edu	37	16	30389862	30389862	+	Intron	SNP	G	T	T			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SERPINB4	6318	broad.mit.edu	37	18	61310714	61310714	+	Missense_Mutation	SNP	C	T	T			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SERPINE2	5270	broad.mit.edu	37	2	224862775	224862775	+	Intron	SNP	C	A	A			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SETBP1	26040	broad.mit.edu	37	18	42618602	42618602	+	Missense_Mutation	SNP	G	T	T			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SETD4	54093	broad.mit.edu	37	21	37423716	37423716	+	Intron	SNP	C	A	A			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SF3B2	10992	broad.mit.edu	37	11	65827268	65827268	+	Missense_Mutation	SNP	G	T	T			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SFXN2	118980	broad.mit.edu	37	10	104489099	104489099	+	Missense_Mutation	SNP	C	G	G			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SGCZ	137868	broad.mit.edu	37	8	14167018	14167018	+	Intron	SNP	G	T	T			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SH3TC1	54436	broad.mit.edu	37	4	8230363	8230363	+	Missense_Mutation	SNP	A	T	T			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SH3TC2	79628	broad.mit.edu	37	5	148406827	148406827	+	Missense_Mutation	SNP	A	T	T			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SH3TC2	79628	broad.mit.edu	37	5	148410979	148410979	+	Intron	SNP	C	T	T			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SIGLEC8	27181	broad.mit.edu	37	19	51960405	51960405	+	Intron	SNP	T	A	A			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SIPA1L1	26037	broad.mit.edu	37	14	72138121	72138121	+	Silent	SNP	A	G	G			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC10A5	347051	broad.mit.edu	37	8	82606934	82606934	+	Missense_Mutation	SNP	T	C	C			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC1A6	6511	broad.mit.edu	37	19	15079179	15079179	+	Missense_Mutation	SNP	C	A	A			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC30A10	55532	broad.mit.edu	37	1	220088847	220088847	+	Missense_Mutation	SNP	G	T	T			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC30A8	169026	broad.mit.edu	37	8	118184655	118184656	+	Intron	DEL	GA	-	-			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC35F1	222553	broad.mit.edu	37	6	118606341	118606341	+	Intron	SNP	C	A	A			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC4A9	83697	broad.mit.edu	37	5	139742048	139742048	+	Silent	SNP	G	T	T			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC6A17	388662	broad.mit.edu	37	1	110734729	110734729	+	Missense_Mutation	SNP	G	T	T			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC9A11	284525	broad.mit.edu	37	1	173478718	173478718	+	Missense_Mutation	SNP	G	T	T			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMG6	23293	broad.mit.edu	37	17	2186176	2186178	+	Intron	DEL	AGC	-	-			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMR3B	10879	broad.mit.edu	37	4	71250059	71250059	+	Intron	SNP	A	C	C			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNORD116-4	100033416	broad.mit.edu	37	15	25342932	25342932	+	Intron	SNP	G	T	T			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNX29	92017	broad.mit.edu	37	16	12571716	12571716	+	Missense_Mutation	SNP	G	T	T			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNX9	51429	broad.mit.edu	37	6	158363843	158363843	+	Missense_Mutation	SNP	G	T	T			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SORCS3	22986	broad.mit.edu	37	10	107012615	107012615	+	Missense_Mutation	SNP	C	A	A			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPAG6	9576	broad.mit.edu	37	10	22675638	22675638	+	Intron	SNP	G	T	T			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPATA5	166378	broad.mit.edu	37	4	123844151	123844151	+	5'Flank	SNP	C	G	G			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPATA5	166378	broad.mit.edu	37	4	123978213	123978213	+	Intron	SNP	C	G	G			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPHKAP	80309	broad.mit.edu	37	2	228882330	228882330	+	Silent	SNP	G	T	T			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPHKAP	80309	broad.mit.edu	37	2	228884754	228884754	+	Nonsense_Mutation	SNP	G	T	T			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPO11	23626	broad.mit.edu	37	20	55912900	55912900	+	Intron	SNP	A	G	G			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPP2	6694	broad.mit.edu	37	2	234975197	234975197	+	Missense_Mutation	SNP	G	T	T			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPRR2G	6706	broad.mit.edu	37	1	153122400	153122400	+	Missense_Mutation	SNP	G	T	T			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPTLC1	10558	broad.mit.edu	37	9	94877733	94877733	+	5'Flank	SNP	C	T	T			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SSX7	280658	broad.mit.edu	37	X	52679341	52679341	+	Intron	SNP	C	A	A			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ST18	9705	broad.mit.edu	37	8	53079524	53079524	+	Silent	SNP	C	T	T			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ST8SIA2	8128	broad.mit.edu	37	15	92988003	92988003	+	Missense_Mutation	SNP	G	T	T			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STAB1	23166	broad.mit.edu	37	3	52546617	52546617	+	Silent	SNP	G	T	T			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STK10	6793	broad.mit.edu	37	5	171482523	171482523	+	Intron	SNP	C	G	G			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STK11	6794	broad.mit.edu	37	19	1207021	1207028	+	Frame_Shift_Del	DEL	CAGCCGCG	-	-	rs121913324		TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STRN	6801	broad.mit.edu	37	2	37121062	37121062	+	Missense_Mutation	SNP	C	A	A			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SUCLG1	8802	broad.mit.edu	37	2	84652801	84652801	+	Intron	SNP	G	T	T			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SUSD5	26032	broad.mit.edu	37	3	33194357	33194357	+	Silent	SNP	C	A	A			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SVEP1	79987	broad.mit.edu	37	9	113169069	113169069	+	Missense_Mutation	SNP	C	A	A			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYNGAP1	8831	broad.mit.edu	37	6	33406232	33406232	+	Missense_Mutation	SNP	C	T	T			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYNPO	11346	broad.mit.edu	37	5	150028579	150028579	+	Missense_Mutation	SNP	C	T	T			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYT15	83849	broad.mit.edu	37	10	46961994	46961994	+	Silent	SNP	C	A	A			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYT15	83849	broad.mit.edu	37	10	46962097	46962097	+	Missense_Mutation	SNP	C	A	A			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYTL2	54843	broad.mit.edu	37	11	85431871	85431871	+	Intron	SNP	C	A	A			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAS2R16	50833	broad.mit.edu	37	7	122635727	122635727	+	5'UTR	SNP	A	T	T			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAS2R39	259285	broad.mit.edu	37	7	142881280	142881280	+	Missense_Mutation	SNP	C	T	T			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBX4	9496	broad.mit.edu	37	17	59560244	59560244	+	Intron	SNP	A	G	G			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBXA2R	6915	broad.mit.edu	37	19	3595963	3595964	+	Intron	DNP	CC	AG	AG			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TCEB3B	51224	broad.mit.edu	37	18	44560052	44560052	+	Silent	SNP	C	A	A			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TCEB3B	51224	broad.mit.edu	37	18	44560065	44560065	+	Missense_Mutation	SNP	A	C	C			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TDO2	6999	broad.mit.edu	37	4	156838451	156838451	+	Intron	SNP	T	A	A			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TDP1	55775	broad.mit.edu	37	14	90446981	90446981	+	Intron	SNP	G	T	T			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TECRL	253017	broad.mit.edu	37	4	65155503	65155503	+	Intron	SNP	C	A	A			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TECRL	253017	broad.mit.edu	37	4	65194246	65194246	+	Silent	SNP	A	G	G			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TECRL	253017	broad.mit.edu	37	4	65275151	65275151	+	5'UTR	SNP	G	T	T			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TFAP2B	7021	broad.mit.edu	37	6	50791330	50791330	+	Silent	SNP	C	T	T			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TGM5	9333	broad.mit.edu	37	15	43545699	43545699	+	Intron	SNP	C	A	A			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
THSD4	79875	broad.mit.edu	37	15	71634020	71634020	+	Intron	SNP	G	T	T			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
THSD4	79875	broad.mit.edu	37	15	72063533	72063533	+	Missense_Mutation	SNP	G	T	T			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TLR4	7099	broad.mit.edu	37	9	120475067	120475067	+	Missense_Mutation	SNP	G	A	A			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM195	392636	broad.mit.edu	37	7	15601460	15601460	+	Missense_Mutation	SNP	G	T	T			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM5	10329	broad.mit.edu	37	12	64202608	64202608	+	Silent	SNP	G	A	A			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNFRSF10B	8795	broad.mit.edu	37	8	22880394	22880394	+	Silent	SNP	A	G	G			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNFRSF9	3604	broad.mit.edu	37	1	7999932	7999932	+	Intron	SNP	G	T	T			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNFSF4	7292	broad.mit.edu	37	1	173174474	173174474	+	Intron	SNP	C	G	G			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNR	7143	broad.mit.edu	37	1	175334162	175334162	+	Silent	SNP	C	A	A			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TOM1L2	146691	broad.mit.edu	37	17	17788143	17788143	+	Intron	DEL	C	-	-			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPH1	7166	broad.mit.edu	37	11	18044194	18044194	+	Intron	SNP	C	A	A			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRDMT1	1787	broad.mit.edu	37	10	17201132	17201133	+	Intron	DNP	CC	AA	AA			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIM45	80263	broad.mit.edu	37	1	117660813	117660813	+	Silent	SNP	C	T	T			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIM60	166655	broad.mit.edu	37	4	165961514	165961514	+	Missense_Mutation	SNP	G	T	T			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIML2	205860	broad.mit.edu	37	4	189026283	189026283	+	Intron	SNP	C	A	A			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRO	7216	broad.mit.edu	37	X	54949684	54949684	+	Missense_Mutation	SNP	A	G	G			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPM3	80036	broad.mit.edu	37	9	73457898	73457898	+	Intron	SNP	G	T	T			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPV5	56302	broad.mit.edu	37	7	142612698	142612698	+	Missense_Mutation	SNP	C	T	T			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TSC2	7249	broad.mit.edu	37	16	2114537	2114537	+	Intron	SNP	C	T	T			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TSNAXIP1	55815	broad.mit.edu	37	16	67855193	67855193	+	Intron	SNP	C	A	A			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTF1	7270	broad.mit.edu	37	9	135278199	135278199	+	Nonsense_Mutation	SNP	C	A	A			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTK	7272	broad.mit.edu	37	6	80718252	80718252	+	Intron	SNP	C	T	T			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179404270	179404270	+	Missense_Mutation	SNP	G	T	T			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TUBA3C	7278	broad.mit.edu	37	13	19755834	19755834	+	Intron	SNP	C	A	A			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBE2MP1	606551	broad.mit.edu	37	16	34404110	34404110	+	RNA	SNP	C	T	T			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBR4	23352	broad.mit.edu	37	1	19505757	19505757	+	Intron	SNP	G	C	C			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UGT2B11	10720	broad.mit.edu	37	4	70080244	70080244	+	Missense_Mutation	SNP	G	C	C			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UNC13A	23025	broad.mit.edu	37	19	17740002	17740002	+	Intron	SNP	T	A	A			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UNC5C	8633	broad.mit.edu	37	4	96123907	96123907	+	Missense_Mutation	SNP	A	G	G			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UPK1B	7348	broad.mit.edu	37	3	118905430	118905430	+	Intron	SNP	A	T	T			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UPK1B	7348	broad.mit.edu	37	3	118922641	118922641	+	Intron	SNP	A	G	G			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USH2A	7399	broad.mit.edu	37	1	215955621	215955621	+	Intron	SNP	G	A	A			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USH2A	7399	broad.mit.edu	37	1	216595449	216595449	+	Missense_Mutation	SNP	T	A	A			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP13	8975	broad.mit.edu	37	3	179399708	179399708	+	Missense_Mutation	SNP	G	T	T			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP8	9101	broad.mit.edu	37	15	50757151	50757151	+	Intron	SNP	C	G	G			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP9Y	8287	broad.mit.edu	37	Y	14928329	14928329	+	Intron	SNP	G	T	T			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	47595028	47595028	+	IGR	SNP	A	T	T			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	52445167	52445167	+	IGR	SNP	G	C	C			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	52445423	52445423	+	IGR	SNP	G	T	T			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	60897085	60897085	+	IGR	SNP	C	A	A			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	55554557	55554557	+	IGR	SNP	C	A	A			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	58155821	58155821	+	IGR	SNP	C	A	A			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	6891940	6891940	+	IGR	SNP	C	A	A			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	88142364	88142364	+	IGR	SNP	C	T	T			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	89499905	89499905	+	IGR	SNP	G	T	T			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	90848284	90848284	+	IGR	SNP	G	T	T			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	97158048	97158048	+	IGR	SNP	C	A	A			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	19255627	19255627	+	IGR	SNP	G	T	T			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	19466750	19466750	+	IGR	SNP	A	C	C			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	23377281	23377281	+	IGR	SNP	T	C	C			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	26810366	26810366	+	IGR	SNP	T	A	A			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	65533489	65533489	+	IGR	SNP	G	A	A			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	20084474	20084474	+	IGR	SNP	G	T	T			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	21579252	21579252	+	IGR	SNP	G	T	T			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	45331825	45331825	+	IGR	SNP	C	A	A			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	51903746	51903746	+	IGR	SNP	G	A	A			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	31746338	31746338	+	IGR	SNP	C	T	T			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	32182787	32182787	+	IGR	SNP	C	A	A			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	32374857	32374857	+	IGR	SNP	G	T	T			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	32823596	32823596	+	IGR	SNP	G	T	T			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	32859177	32859177	+	IGR	SNP	C	A	A	rs138040316	by1000genomes	TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	33404530	33404530	+	IGR	SNP	C	A	A	rs112078794		TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	33573651	33573651	+	IGR	SNP	C	G	G			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	33941786	33941786	+	IGR	SNP	G	T	T			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	34481734	34481734	+	IGR	SNP	C	A	A			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	33704526	33704526	+	IGR	SNP	C	T	T			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	22499420	22499420	+	IGR	SNP	G	T	T			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	22654150	22654150	+	IGR	SNP	G	T	T			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	148903682	148903682	+	IGR	SNP	C	G	G			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	149039897	149039897	+	IGR	SNP	C	G	G			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	149049619	149049619	+	IGR	DEL	G	-	-			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	149089695	149089695	+	IGR	SNP	C	A	A			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	17013196	17013196	+	IGR	SNP	A	T	T			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	208870695	208870695	+	IGR	SNP	C	A	A			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	248605024	248605024	+	IGR	SNP	C	A	A			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	97050094	97050094	+	IGR	SNP	C	T	T			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	30275367	30275367	+	IGR	SNP	C	A	A			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	22	17052984	17052984	+	IGR	SNP	A	G	G			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	133019617	133019617	+	IGR	SNP	C	A	A			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	161797546	161797546	+	IGR	SNP	G	T	T			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	172348037	172348037	+	IGR	SNP	G	A	A			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	20026148	20026148	+	IGR	SNP	C	T	T			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	64574940	64574940	+	IGR	SNP	G	T	T			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	85718524	85718524	+	IGR	SNP	C	A	A			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	91795473	91795473	+	IGR	SNP	T	C	C			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	91924859	91924859	+	IGR	SNP	T	A	A			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	91936113	91936113	+	IGR	SNP	G	T	T			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	138800704	138800704	+	IGR	SNP	C	T	T			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	146994985	146994985	+	IGR	SNP	C	G	G			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	36810105	36810105	+	IGR	SNP	T	G	G			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	96285793	96285793	+	IGR	SNP	C	A	A			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	97926913	97926913	+	IGR	SNP	G	T	T			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	111321186	111321186	+	IGR	SNP	C	T	T			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	117519791	117519791	+	IGR	SNP	C	A	A			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	119321698	119321698	+	IGR	SNP	G	T	T			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	119431186	119431186	+	IGR	SNP	G	T	T			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	69403317	69403317	+	IGR	SNP	C	G	G			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	9705237	9705237	+	IGR	SNP	A	C	C			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	107061830	107061830	+	IGR	SNP	C	A	A			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	110284058	110284058	+	IGR	SNP	C	A	A			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	126507291	126507291	+	IGR	SNP	G	T	T			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	16192582	16192582	+	IGR	SNP	C	A	A			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	41586740	41586740	+	IGR	SNP	C	A	A			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	112687240	112687240	+	IGR	SNP	A	T	T			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	27236911	27236911	+	IGR	SNP	G	T	T			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	50880809	50880809	+	IGR	SNP	T	C	C			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	54467910	54467910	+	IGR	SNP	G	T	T			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	80775047	80775047	+	IGR	SNP	G	A	A			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	53070596	53070596	+	IGR	SNP	C	G	G			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	53071119	53071119	+	IGR	SNP	C	T	T			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	62694685	62694685	+	IGR	SNP	G	T	T			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	84613574	84613574	+	IGR	SNP	G	T	T			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	130486401	130486401	+	IGR	SNP	G	A	A			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	144147425	144147425	+	IGR	SNP	C	A	A			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	47502984	47502984	+	IGR	SNP	C	A	A			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	47503033	47503033	+	IGR	SNP	C	A	A			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	89497986	89497986	+	IGR	SNP	C	A	A			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	90426808	90426808	+	IGR	SNP	C	A	A			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	103494260	103494260	+	IGR	SNP	C	T	T			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	40293127	40293127	+	IGR	SNP	G	T	T			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	68357394	68357394	+	IGR	SNP	G	A	A			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	68357428	68357428	+	IGR	SNP	C	A	A			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	76264717	76264717	+	IGR	SNP	G	T	T			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	26178771	26178771	+	IGR	SNP	C	A	A			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	73619227	73619227	+	IGR	SNP	G	A	A			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	Y	13478425	13478425	+	IGR	SNP	G	T	T			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	Y	22903153	22903153	+	IGR	SNP	G	A	A			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	Y	28494542	28494542	+	IGR	SNP	G	A	A			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VAMP7	6845	broad.mit.edu	37	X	155128066	155128066	+	Intron	SNP	G	T	T			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VCAN	1462	broad.mit.edu	37	5	82836721	82836722	+	Nonsense_Mutation	DNP	GG	CT	CT			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VENTX	27287	broad.mit.edu	37	10	135051638	135051638	+	Missense_Mutation	SNP	G	A	A			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VNN2	8875	broad.mit.edu	37	6	133073695	133073695	+	Missense_Mutation	SNP	A	G	G			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VPS13C	54832	broad.mit.edu	37	15	62232961	62232961	+	Missense_Mutation	SNP	T	A	A			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VSX1	30813	broad.mit.edu	37	20	25059410	25059410	+	Intron	SNP	G	A	A			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDFY3	23001	broad.mit.edu	37	4	85593954	85593954	+	3'UTR	SNP	C	A	A			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR7	23335	broad.mit.edu	37	18	54358406	54358406	+	Intron	SNP	A	T	T			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR88	126248	broad.mit.edu	37	19	33639782	33639782	+	Silent	SNP	C	T	T			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WTAP	9589	broad.mit.edu	37	6	160176455	160176455	+	Missense_Mutation	SNP	G	T	T			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WWC2	80014	broad.mit.edu	37	4	184210880	184210880	+	Intron	DEL	G	-	-			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WWC3	55841	broad.mit.edu	37	X	10066716	10066716	+	Intron	SNP	G	T	T			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WWP1	11059	broad.mit.edu	37	8	87414505	87414505	+	Intron	SNP	A	G	G			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
YES1	7525	broad.mit.edu	37	18	751658	751659	+	Intron	DNP	CC	AA	AA			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
YIF1B	90522	broad.mit.edu	37	19	38799568	38799568	+	Intron	SNP	C	A	A			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZBTB46	140685	broad.mit.edu	37	20	62421979	62421979	+	Silent	SNP	C	T	T			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZC3HAV1	56829	broad.mit.edu	37	7	138739811	138739811	+	Intron	SNP	C	A	A			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZFHX4	79776	broad.mit.edu	37	8	77618080	77618080	+	Missense_Mutation	SNP	C	G	G			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZFHX4	79776	broad.mit.edu	37	8	77776737	77776737	+	Missense_Mutation	SNP	C	T	T			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZFP161	7541	broad.mit.edu	37	18	5291456	5291456	+	Missense_Mutation	SNP	C	G	G			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF174	7727	broad.mit.edu	37	16	3452493	3452493	+	Intron	SNP	C	G	G			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF184	7738	broad.mit.edu	37	6	27419486	27419486	+	Nonsense_Mutation	SNP	C	A	A			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF311	282890	broad.mit.edu	37	6	28971177	28971177	+	Intron	SNP	T	G	G			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF404	342908	broad.mit.edu	37	19	44377779	44377779	+	Missense_Mutation	SNP	A	T	T			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF521	25925	broad.mit.edu	37	18	22804736	22804736	+	Missense_Mutation	SNP	C	T	T			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF521	25925	broad.mit.edu	37	18	22805482	22805482	+	Silent	SNP	G	A	A			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF528	84436	broad.mit.edu	37	19	52909907	52909908	+	Intron	DNP	GG	TT	TT			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF536	9745	broad.mit.edu	37	19	30934399	30934399	+	Intron	SNP	G	T	T			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF595	152687	broad.mit.edu	37	4	59488	59488	+	Intron	SNP	C	A	A			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF624	57547	broad.mit.edu	37	17	16526384	16526384	+	Missense_Mutation	SNP	G	A	A			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF676	163223	broad.mit.edu	37	19	22379629	22379629	+	5'UTR	SNP	G	A	A			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF750	79755	broad.mit.edu	37	17	80789581	80789581	+	Silent	SNP	G	A	A			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF75D	7626	broad.mit.edu	37	X	134427884	134427884	+	Silent	SNP	G	T	T			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF862	643641	broad.mit.edu	37	7	149545230	149545230	+	Silent	SNP	G	T	T			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZP4	57829	broad.mit.edu	37	1	238048890	238048890	+	Intron	SNP	G	T	T			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZRANB3	84083	broad.mit.edu	37	2	136033319	136033319	+	Missense_Mutation	SNP	C	T	T			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	42924605	42924605	+	Intron	SNP	G	T	T			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	31125412	31125412	+	Intron	SNP	T	G	G			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	71512821	71512821	+	Intron	SNP	G	T	T			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	31289554	31289554	+	Splice_Site	SNP	C	A	A			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	101496129	101496129	+	5'Flank	SNP	C	G	G			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	42003773	42003773	+	5'Flank	SNP	T	G	G			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	9804320	9804321	+	Intron	DNP	GG	TT	TT			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	16890343	16890343	+	5'Flank	SNP	T	C	C			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	243251439	243251439	+	RNA	SNP	T	A	A			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	89533653	89533653	+	Intron	SNP	G	T	T			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	89533913	89533913	+	RNA	SNP	G	T	T			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	89552055	89552055	+	Intron	SNP	C	A	A			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	90108969	90108969	+	Intron	SNP	C	T	T			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	96079907	96079907	+	5'Flank	SNP	G	C	C			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	159819835	159819835	+	Intron	SNP	G	A	A			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	142469352	142469352	+	Intron	SNP	C	A	A			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	65154480	65154480	+	Intron	SNP	A	G	G			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
