Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer
A1CF	29974	broad.mit.edu	37	10	52566651	52566651	+	Intron	SNP	A	G	G			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AASDH	132949	broad.mit.edu	37	4	57220831	57220831	+	Intron	SNP	T	G	G			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCA6	23460	broad.mit.edu	37	17	67082710	67082710	+	Intron	SNP	T	A	A			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCA7	10347	broad.mit.edu	37	19	1044509	1044509	+	Intron	SNP	G	A	A			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCC12	94160	broad.mit.edu	37	16	48141209	48141209	+	Intron	SNP	T	A	A			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCC2	1244	broad.mit.edu	37	10	101594494	101594494	+	Intron	SNP	C	A	A			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABHD2	11057	broad.mit.edu	37	15	89659582	89659582	+	Silent	SNP	C	A	A			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACCN5	51802	broad.mit.edu	37	4	156775470	156775470	+	Intron	SNP	T	C	C			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACIN1	22985	broad.mit.edu	37	14	23562610	23562610	+	Intron	SNP	C	G	G			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACSL1	2180	broad.mit.edu	37	4	185678833	185678833	+	Missense_Mutation	SNP	T	C	C			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACTC1	70	broad.mit.edu	37	15	35086936	35086936	+	Missense_Mutation	SNP	C	A	A			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACTN2	88	broad.mit.edu	37	1	236925911	236925911	+	Missense_Mutation	SNP	G	T	T	rs142646143		TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACTRT2	140625	broad.mit.edu	37	1	2938383	2938383	+	Nonsense_Mutation	SNP	C	T	T			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM6	8755	broad.mit.edu	37	14	106236029	106236029	+	RNA	SNP	G	C	C			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM6	8755	broad.mit.edu	37	14	106236931	106236931	+	Intron	SNP	C	T	T			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM6	8755	broad.mit.edu	37	14	106518371	106518371	+	Intron	SNP	G	A	A			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM6	8755	broad.mit.edu	37	14	106691644	106691644	+	Intron	SNP	G	A	A			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM6	8755	broad.mit.edu	37	14	106743824	106743824	+	Intron	SNP	G	A	A			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM6	8755	broad.mit.edu	37	14	106974678	106974678	+	Intron	SNP	G	T	T			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM6	8755	broad.mit.edu	37	14	107179223	107179223	+	RNA	SNP	G	T	T			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM6	8755	broad.mit.edu	37	14	107183369	107183369	+	Intron	SNP	G	A	A			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS12	81792	broad.mit.edu	37	5	33549428	33549428	+	Missense_Mutation	SNP	C	A	A			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS2	9509	broad.mit.edu	37	5	178552078	178552078	+	Missense_Mutation	SNP	G	C	C			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTSL1	92949	broad.mit.edu	37	9	18474374	18474375	+	Intron	DEL	TG	-	-			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADA	100	broad.mit.edu	37	20	43249676	43249676	+	Missense_Mutation	SNP	C	T	T			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADNP	23394	broad.mit.edu	37	20	49511090	49511090	+	Intron	SNP	G	A	A			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AFF1	4299	broad.mit.edu	37	4	88016155	88016155	+	Intron	SNP	G	A	A			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AGRN	375790	broad.mit.edu	37	1	978964	978964	+	Silent	SNP	C	G	G			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AK5	26289	broad.mit.edu	37	1	77759535	77759535	+	Missense_Mutation	SNP	A	G	G			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AKAP14	158798	broad.mit.edu	37	X	119053913	119053913	+	Missense_Mutation	SNP	G	T	T			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AKT2	208	broad.mit.edu	37	19	40740980	40740980	+	Missense_Mutation	SNP	C	A	A			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALDOA	226	broad.mit.edu	37	16	30080144	30080144	+	Missense_Mutation	SNP	G	C	C			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALDOB	229	broad.mit.edu	37	9	104190767	104190770	+	Frame_Shift_Del	DEL	TTTG	-	-			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALKBH6	84964	broad.mit.edu	37	19	36505076	36505076	+	5'Flank	DEL	C	-	-			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALK	238	broad.mit.edu	37	2	29551313	29551313	+	Silent	SNP	G	A	A			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALMS1	7840	broad.mit.edu	37	2	73677420	73677420	+	Missense_Mutation	SNP	A	T	T			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AMPD1	270	broad.mit.edu	37	1	115226990	115226990	+	Intron	SNP	C	A	A			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANK1	286	broad.mit.edu	37	8	41545812	41545812	+	Intron	SNP	C	G	G			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANO2	57101	broad.mit.edu	37	12	5939550	5939550	+	Intron	SNP	C	A	A			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANO3	63982	broad.mit.edu	37	11	26678048	26678048	+	Intron	SNP	G	T	T			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AP3B1	8546	broad.mit.edu	37	5	77512134	77512134	+	Intron	SNP	T	G	G	rs138376622	by1000genomes	TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AP3B2	8120	broad.mit.edu	37	15	83358226	83358226	+	Intron	SNP	T	C	C			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
APBB1	322	broad.mit.edu	37	11	6432691	6432691	+	Intron	SNP	T	A	A			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
APLF	200558	broad.mit.edu	37	2	68804987	68804987	+	Missense_Mutation	SNP	G	T	T			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AQP1	358	broad.mit.edu	37	7	30963182	30963182	+	Missense_Mutation	SNP	G	A	A			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AQP7	364	broad.mit.edu	37	9	33386945	33386945	+	Intron	SNP	G	A	A			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARAP3	64411	broad.mit.edu	37	5	141036033	141036033	+	Intron	SNP	C	T	T			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARFGEF1	10565	broad.mit.edu	37	8	68208794	68208794	+	Missense_Mutation	SNP	C	A	A			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGAP36	158763	broad.mit.edu	37	X	130222789	130222789	+	3'UTR	DEL	G	-	-			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGEF1	9138	broad.mit.edu	37	19	42398691	42398691	+	Intron	SNP	C	T	T			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARID1A	8289	broad.mit.edu	37	1	27089625	27089625	+	Missense_Mutation	SNP	G	C	C			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARMC3	219681	broad.mit.edu	37	10	23321787	23321787	+	Intron	SNP	C	A	A			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASGR1	432	broad.mit.edu	37	17	7080027	7080027	+	Intron	SNP	A	G	G			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASXL2	55252	broad.mit.edu	37	2	25966399	25966399	+	Missense_Mutation	SNP	T	C	C			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP13A4	84239	broad.mit.edu	37	3	193188773	193188773	+	Missense_Mutation	SNP	T	A	A			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP13A4	84239	broad.mit.edu	37	3	193210950	193210950	+	Splice_Site	SNP	C	A	A			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP1A2	477	broad.mit.edu	37	1	160093794	160093794	+	Missense_Mutation	SNP	A	T	T			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP1A2	477	broad.mit.edu	37	1	160099287	160099287	+	Intron	SNP	G	T	T			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP4A	495	broad.mit.edu	37	19	36044674	36044674	+	Missense_Mutation	SNP	G	A	A			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP5G2	517	broad.mit.edu	37	12	54059050	54059050	+	3'UTR	SNP	C	A	A			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP8B1	5205	broad.mit.edu	37	18	55315736	55315736	+	Missense_Mutation	SNP	C	A	A			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BAGE2	85319	broad.mit.edu	37	21	11097607	11097608	+	Missense_Mutation	DNP	GC	AA	AA	rs4913758		TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BCL11B	64919	broad.mit.edu	37	14	99641943	99641943	+	Silent	SNP	C	T	T			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BEND2	139105	broad.mit.edu	37	X	18238753	18238753	+	Intron	SNP	G	A	A			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BLMH	642	broad.mit.edu	37	17	28576109	28576109	+	Nonsense_Mutation	SNP	C	A	A			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BMPR2	659	broad.mit.edu	37	2	203378654	203378654	+	Intron	SNP	G	A	A			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BTF3	689	broad.mit.edu	37	5	72798404	72798404	+	Missense_Mutation	SNP	A	G	G			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BTNL8	79908	broad.mit.edu	37	5	180335652	180335652	+	Missense_Mutation	SNP	C	G	G			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BTNL8	79908	broad.mit.edu	37	5	180376167	180376167	+	Intron	SNP	G	T	T			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C10orf68	79741	broad.mit.edu	37	10	33141020	33141020	+	Intron	SNP	A	G	G			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C10orf82	143379	broad.mit.edu	37	10	118424166	118424166	+	Intron	SNP	C	T	T			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C11orf45	219833	broad.mit.edu	37	11	128774402	128774402	+	Silent	SNP	C	T	T			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C12orf35	55196	broad.mit.edu	37	12	32134697	32134697	+	Missense_Mutation	SNP	G	A	A			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C12orf63	374467	broad.mit.edu	37	12	97078910	97078910	+	Missense_Mutation	SNP	A	C	C			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C15orf2	23742	broad.mit.edu	37	15	24923531	24923531	+	Silent	SNP	C	T	T			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C16orf92	146378	broad.mit.edu	37	16	30035561	30035561	+	3'UTR	SNP	G	A	A			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C17orf68	80169	broad.mit.edu	37	17	8131487	8131487	+	3'UTR	SNP	T	C	C			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf116	79098	broad.mit.edu	37	1	207195331	207195331	+	Missense_Mutation	SNP	A	G	G			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf141	400757	broad.mit.edu	37	1	67592863	67592863	+	Missense_Mutation	SNP	C	A	A			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf173	127254	broad.mit.edu	37	1	75038834	75038834	+	Missense_Mutation	SNP	C	A	A			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf94	84970	broad.mit.edu	37	1	34663081	34663081	+	Silent	SNP	C	T	T			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C20orf117	140710	broad.mit.edu	37	20	35467637	35467643	+	Frame_Shift_Del	DEL	GACCACG	-	-	rs151235047	by1000genomes	TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C20orf185	359710	broad.mit.edu	37	20	31660061	31660061	+	Intron	SNP	G	A	A			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C2orf86	51057	broad.mit.edu	37	2	63664755	63664755	+	Intron	SNP	T	A	A			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C5orf25	375484	broad.mit.edu	37	5	175717845	175717845	+	Frame_Shift_Del	DEL	C	-	-			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C5orf58	133874	broad.mit.edu	37	5	169673169	169673169	+	3'UTR	SNP	G	C	C			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C6	729	broad.mit.edu	37	5	41149307	41149307	+	Intron	SNP	G	A	A			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C7	730	broad.mit.edu	37	5	40976868	40976868	+	Missense_Mutation	SNP	G	T	T			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C7orf58	79974	broad.mit.edu	37	7	120655845	120655845	+	Missense_Mutation	SNP	G	A	A			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CA1	759	broad.mit.edu	37	8	86250418	86250418	+	Intron	SNP	C	T	T			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1D	776	broad.mit.edu	37	3	53760942	53760942	+	Missense_Mutation	SNP	G	T	T			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1E	777	broad.mit.edu	37	1	181705475	181705475	+	Missense_Mutation	SNP	G	C	C			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNG7	59284	broad.mit.edu	37	19	54418841	54418841	+	Intron	SNP	T	A	A			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CADM3	57863	broad.mit.edu	37	1	159163593	159163593	+	Intron	SNP	G	T	T			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CAPN2	824	broad.mit.edu	37	1	223959907	223959907	+	Missense_Mutation	SNP	A	G	G			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CASP1	834	broad.mit.edu	37	11	104934727	104934727	+	Intron	SNP	C	A	A			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CATSPER3	347732	broad.mit.edu	37	5	134331898	134331898	+	Intron	SNP	A	T	T			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CC2D1A	54862	broad.mit.edu	37	19	14040911	14040911	+	Missense_Mutation	SNP	C	T	T			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC132	55610	broad.mit.edu	37	7	92963514	92963514	+	Intron	SNP	G	C	C			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC83	220047	broad.mit.edu	37	11	85626333	85626333	+	Intron	SNP	C	A	A			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCNH	902	broad.mit.edu	37	5	86703889	86703889	+	Missense_Mutation	SNP	T	C	C			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCT3	7203	broad.mit.edu	37	1	156307972	156307972	+	Missense_Mutation	SNP	T	C	C			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD209	30835	broad.mit.edu	37	19	7810548	7810548	+	Missense_Mutation	SNP	C	G	G			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDC45	8318	broad.mit.edu	37	22	19471469	19471469	+	Missense_Mutation	SNP	C	T	T			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH10	1008	broad.mit.edu	37	5	24488183	24488183	+	Missense_Mutation	SNP	G	T	T			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH12	1010	broad.mit.edu	37	5	21802463	21802463	+	Missense_Mutation	SNP	G	T	T			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH2	1000	broad.mit.edu	37	18	25583209	25583209	+	Intron	SNP	T	A	A			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH4	1002	broad.mit.edu	37	20	60511762	60511762	+	Intron	SNP	C	T	T			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH8	1006	broad.mit.edu	37	16	61689618	61689618	+	Silent	SNP	G	T	T			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH8	1006	broad.mit.edu	37	16	61761041	61761041	+	Missense_Mutation	SNP	G	C	C			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDHR1	92211	broad.mit.edu	37	10	85972792	85972792	+	Intron	SNP	A	G	G			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDKL1	8814	broad.mit.edu	37	14	50805555	50805555	+	Intron	SNP	C	A	A			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDYL2	124359	broad.mit.edu	37	16	80718806	80718806	+	Missense_Mutation	SNP	C	G	G			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CEACAM3	1084	broad.mit.edu	37	19	42301736	42301736	+	Missense_Mutation	SNP	G	A	A			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CELA2B	51032	broad.mit.edu	37	1	15808918	15808918	+	Intron	SNP	T	A	A			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CELA3B	23436	broad.mit.edu	37	1	22303654	22303654	+	Intron	SNP	C	A	A			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CELA3B	23436	broad.mit.edu	37	1	22303770	22303770	+	Intron	SNP	G	T	T			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CEP290	80184	broad.mit.edu	37	12	88515073	88515073	+	Intron	SNP	T	C	C			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHD5	26038	broad.mit.edu	37	1	6169915	6169915	+	Missense_Mutation	SNP	G	T	T			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHRM2	1129	broad.mit.edu	37	7	136699767	136699768	+	Frame_Shift_Ins	INS	-	C	C			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHST12	55501	broad.mit.edu	37	7	2472309	2472309	+	Missense_Mutation	SNP	T	G	G			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHST1	8534	broad.mit.edu	37	11	45671388	45671388	+	Silent	SNP	G	A	A			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CISD1	55847	broad.mit.edu	37	10	60036866	60036866	+	Intron	SNP	C	A	A			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLCNKA	1187	broad.mit.edu	37	1	16358738	16358738	+	Silent	SNP	G	T	T			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLEC3A	10143	broad.mit.edu	37	16	78056652	78056652	+	Intron	SNP	T	C	C			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLPX	10845	broad.mit.edu	37	15	65447222	65447222	+	Silent	SNP	C	T	T			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLSTN3	9746	broad.mit.edu	37	12	7303151	7303151	+	Missense_Mutation	SNP	A	G	G			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNBD1	168975	broad.mit.edu	37	8	87899795	87899795	+	Missense_Mutation	SNP	T	G	G			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNGB3	54714	broad.mit.edu	37	8	87666323	87666323	+	Intron	SNP	C	T	T			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNKSR2	22866	broad.mit.edu	37	X	21624935	21624935	+	Missense_Mutation	SNP	C	T	T			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL11A1	1301	broad.mit.edu	37	1	103348929	103348929	+	Intron	SNP	G	T	T			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL11A2	1302	broad.mit.edu	37	6	33156836	33156836	+	Frame_Shift_Del	DEL	C	-	-	rs148765616		TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL1A2	1278	broad.mit.edu	37	7	94024394	94024394	+	Frame_Shift_Del	DEL	A	-	-			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL22A1	169044	broad.mit.edu	37	8	139696777	139696777	+	Intron	SNP	G	T	T			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL5A1	1289	broad.mit.edu	37	9	137619311	137619311	+	Intron	SNP	A	C	C			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL6A3	1293	broad.mit.edu	37	2	238277679	238277679	+	Missense_Mutation	SNP	C	G	G			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CORO2B	10391	broad.mit.edu	37	15	69006317	69006317	+	Missense_Mutation	SNP	G	T	T			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPA1	1357	broad.mit.edu	37	7	130020359	130020359	+	5'UTR	SNP	A	G	G			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPXM1	56265	broad.mit.edu	37	20	2777788	2777788	+	Intron	SNP	T	A	A			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPXM1	56265	broad.mit.edu	37	20	2778833	2778833	+	Silent	SNP	C	A	A			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPXM2	119587	broad.mit.edu	37	10	125530699	125530699	+	Intron	SNP	C	A	A			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CRHR1	1394	broad.mit.edu	37	17	43911012	43911012	+	Intron	DEL	C	-	-			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CRIM1	51232	broad.mit.edu	37	2	36775852	36775852	+	3'UTR	SNP	C	A	A			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CRISPLD1	83690	broad.mit.edu	37	8	75926293	75926293	+	Missense_Mutation	SNP	G	T	T			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD1	64478	broad.mit.edu	37	8	2949101	2949101	+	Missense_Mutation	SNP	A	T	T			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD1	64478	broad.mit.edu	37	8	3087470	3087470	+	Intron	SNP	T	C	C			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD1	64478	broad.mit.edu	37	8	3474272	3474272	+	Missense_Mutation	SNP	C	A	A			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD3	114788	broad.mit.edu	37	8	113256788	113256788	+	Missense_Mutation	SNP	G	T	T			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD3	114788	broad.mit.edu	37	8	113323386	113323386	+	Missense_Mutation	SNP	C	T	T			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD3	114788	broad.mit.edu	37	8	113363403	113363403	+	Splice_Site	SNP	C	T	T			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTNNA3	29119	broad.mit.edu	37	10	67679945	67679945	+	3'UTR	SNP	G	T	T			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTNND2	1501	broad.mit.edu	37	5	11236919	11236919	+	Missense_Mutation	SNP	C	A	A			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CUL3	8452	broad.mit.edu	37	2	225362561	225362561	+	Missense_Mutation	SNP	T	C	C			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CXCR2	3579	broad.mit.edu	37	2	219000278	219000278	+	Missense_Mutation	SNP	G	T	T			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CXCR7	57007	broad.mit.edu	37	2	237489646	237489646	+	Missense_Mutation	SNP	A	G	G			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP11B1	1584	broad.mit.edu	37	8	143958272	143958272	+	Missense_Mutation	SNP	G	T	T			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP19A1	1588	broad.mit.edu	37	15	51535050	51535050	+	Silent	SNP	G	A	A			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP2A7	1549	broad.mit.edu	37	19	41450773	41450773	+	Intron	SNP	A	T	T			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP4F22	126410	broad.mit.edu	37	19	15661579	15661579	+	Intron	SNP	A	G	G			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DAXX	1616	broad.mit.edu	37	6	33290711	33290711	+	5'UTR	SNP	C	T	T			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCC	1630	broad.mit.edu	37	18	51025817	51025817	+	Missense_Mutation	SNP	C	A	A			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCDC1	341019	broad.mit.edu	37	11	31327171	31327171	+	Missense_Mutation	SNP	T	C	C			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCHS1	8642	broad.mit.edu	37	11	6661991	6661991	+	Missense_Mutation	SNP	C	A	A			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCLK1	9201	broad.mit.edu	37	13	36383313	36383313	+	Intron	SNP	C	A	A			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCX	1641	broad.mit.edu	37	X	110653618	110653618	+	Silent	SNP	A	G	G			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DDI2	84301	broad.mit.edu	37	1	15953187	15953187	+	Silent	SNP	C	T	T			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DDX43	55510	broad.mit.edu	37	6	74124223	74124223	+	Intron	SNP	T	A	A			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DDX53	168400	broad.mit.edu	37	X	23019678	23019678	+	Nonsense_Mutation	SNP	G	T	T			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DENND5A	23258	broad.mit.edu	37	11	9171825	9171825	+	Intron	SNP	T	A	A			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DGKB	1607	broad.mit.edu	37	7	14378177	14378177	+	Silent	SNP	G	C	C			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DHX8	1659	broad.mit.edu	37	17	41573700	41573700	+	Intron	DEL	C	-	-			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DLG2	1740	broad.mit.edu	37	11	83183723	83183723	+	Intron	SNP	C	A	A			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH7	56171	broad.mit.edu	37	2	196689130	196689130	+	Missense_Mutation	SNP	A	G	G			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAJB11	51726	broad.mit.edu	37	3	186299186	186299186	+	Silent	SNP	G	A	A			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAJC11	55735	broad.mit.edu	37	1	6697497	6697497	+	Intron	SNP	A	G	G			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNMT3B	1789	broad.mit.edu	37	20	31379350	31379350	+	Intron	SNP	G	A	A			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DOC2A	8448	broad.mit.edu	37	16	30021433	30021433	+	Silent	SNP	G	T	T			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DOCK2	1794	broad.mit.edu	37	5	169494560	169494560	+	Missense_Mutation	SNP	C	A	A			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DOCK7	85440	broad.mit.edu	37	1	63098998	63098998	+	Intron	SNP	T	C	C			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DPP6	1804	broad.mit.edu	37	7	154172210	154172210	+	Intron	SNP	G	T	T			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DPY19L2P1	554236	broad.mit.edu	37	7	35145569	35145569	+	Intron	SNP	A	G	G			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DST	667	broad.mit.edu	37	6	56485224	56485224	+	Intron	SNP	A	G	G			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DTNBP1	84062	broad.mit.edu	37	6	15524529	15524529	+	Intron	SNP	A	G	G			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DUSP26	78986	broad.mit.edu	37	8	33449609	33449609	+	Silent	SNP	T	C	C			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DYTN	391475	broad.mit.edu	37	2	207527633	207527633	+	Missense_Mutation	SNP	G	A	A			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EFHA2	286097	broad.mit.edu	37	8	16921848	16921848	+	Intron	SNP	G	T	T			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EGFLAM	133584	broad.mit.edu	37	5	38448410	38448410	+	Silent	SNP	A	T	T			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EGF	1950	broad.mit.edu	37	4	110884190	110884190	+	Intron	SNP	C	T	T			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EGF	1950	broad.mit.edu	37	4	110901026	110901026	+	Intron	SNP	A	T	T			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EHMT2	10919	broad.mit.edu	37	6	31864667	31864667	+	Intron	SNP	G	T	T			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EIF4EBP1	1978	broad.mit.edu	37	8	37917294	37917294	+	Intron	SNP	C	A	A			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EIF4G1	1981	broad.mit.edu	37	3	184052638	184052638	+	Missense_Mutation	SNP	C	T	T			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ELL	8178	broad.mit.edu	37	19	18556214	18556214	+	Intron	SNP	C	G	G			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EML5	161436	broad.mit.edu	37	14	89181381	89181381	+	Frame_Shift_Del	DEL	C	-	-			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EMP3	2014	broad.mit.edu	37	19	48829985	48829985	+	Intron	SNP	G	C	C			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPHA5	2044	broad.mit.edu	37	4	66218804	66218804	+	Missense_Mutation	SNP	C	A	A			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ERCC3	2071	broad.mit.edu	37	2	128044238	128044238	+	Intron	SNP	G	A	A			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ERLIN2	11160	broad.mit.edu	37	8	37608052	37608052	+	Intron	SNP	G	T	T			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ESPL1	9700	broad.mit.edu	37	12	53671429	53671429	+	Intron	SNP	T	C	C			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ESRRG	2104	broad.mit.edu	37	1	216741310	216741310	+	Intron	SNP	G	T	T			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ETV5	2119	broad.mit.edu	37	3	185797643	185797643	+	Missense_Mutation	SNP	T	G	G			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EXOC6B	23233	broad.mit.edu	37	2	72562101	72562101	+	Missense_Mutation	SNP	T	A	A	rs111624023		TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EXOSC10	5394	broad.mit.edu	37	1	11142707	11142707	+	Intron	SNP	T	C	C			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
F13A1	2162	broad.mit.edu	37	6	6266993	6266993	+	Silent	SNP	G	C	C			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
F2R	2149	broad.mit.edu	37	5	76029084	76029084	+	Missense_Mutation	SNP	C	A	A			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM10A4	145165	broad.mit.edu	37	13	50746159	50746159	+	5'UTR	SNP	G	A	A			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM113B	91523	broad.mit.edu	37	12	47529306	47529306	+	Intron	SNP	A	C	C			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM129A	116496	broad.mit.edu	37	1	184767196	184767196	+	Intron	SNP	C	A	A			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM194A	131831	broad.mit.edu	37	3	150384584	150384584	+	Missense_Mutation	SNP	G	T	T			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAT4	79633	broad.mit.edu	37	4	126241071	126241071	+	Missense_Mutation	SNP	C	T	T			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAT4	79633	broad.mit.edu	37	4	126412622	126412622	+	Missense_Mutation	SNP	A	G	G			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBN2	2201	broad.mit.edu	37	5	127704944	127704944	+	Missense_Mutation	SNP	C	T	T			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBN3	84467	broad.mit.edu	37	19	8138147	8138147	+	Silent	SNP	G	A	A			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FMNL3	91010	broad.mit.edu	37	12	50060007	50060007	+	Intron	SNP	C	A	A			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FOLH1	2346	broad.mit.edu	37	11	49170214	49170214	+	Silent	SNP	C	A	A			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FOXC2	2303	broad.mit.edu	37	16	86602465	86602465	+	3'UTR	SNP	C	T	T			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FOXN1	8456	broad.mit.edu	37	17	26864298	26864298	+	Silent	SNP	G	A	A			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FREM1	158326	broad.mit.edu	37	9	14851267	14851267	+	Intron	SNP	G	T	T			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FRMD3	257019	broad.mit.edu	37	9	85958123	85958123	+	Missense_Mutation	SNP	C	A	A			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FRMD5	84978	broad.mit.edu	37	15	44281691	44281691	+	Intron	SNP	C	G	G			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FSHR	2492	broad.mit.edu	37	2	49210068	49210068	+	Silent	SNP	G	T	T			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FSHR	2492	broad.mit.edu	37	2	49216143	49216143	+	Missense_Mutation	SNP	A	G	G			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FUK	197258	broad.mit.edu	37	16	70500067	70500067	+	Missense_Mutation	SNP	G	T	T			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FYN	2534	broad.mit.edu	37	6	112024101	112024101	+	Silent	SNP	T	A	A			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GAD2	2572	broad.mit.edu	37	10	26534807	26534807	+	Intron	SNP	C	A	A			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GAL3ST3	89792	broad.mit.edu	37	11	65810495	65810495	+	Missense_Mutation	SNP	T	G	G			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GATA5	140628	broad.mit.edu	37	20	61040522	61040522	+	Splice_Site	SNP	T	A	A			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GBA2	57704	broad.mit.edu	37	9	35738882	35738882	+	Missense_Mutation	SNP	C	T	T			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GBP3	2635	broad.mit.edu	37	1	89480279	89480279	+	Missense_Mutation	SNP	C	T	T			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GEFT	115557	broad.mit.edu	37	12	58006846	58006846	+	Silent	SNP	C	G	G			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GEFT	115557	broad.mit.edu	37	12	58010383	58010383	+	Intron	SNP	T	A	A			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GEM	2669	broad.mit.edu	37	8	95262661	95262661	+	Missense_Mutation	SNP	C	A	A			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GFRAL	389400	broad.mit.edu	37	6	55196452	55196453	+	Intron	INS	-	T	T			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GHRH	2691	broad.mit.edu	37	20	35884948	35884948	+	Intron	SNP	G	C	C			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GIGYF2	26058	broad.mit.edu	37	2	233594298	233594298	+	Intron	SNP	T	G	G			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLT1D1	144423	broad.mit.edu	37	12	129360514	129360514	+	Nonsense_Mutation	SNP	G	T	T			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GOSR2	9570	broad.mit.edu	37	17	45008638	45008638	+	Intron	SNP	G	T	T			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GP2	2813	broad.mit.edu	37	16	20329466	20329466	+	Intron	SNP	C	A	A			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPBP1L1	60313	broad.mit.edu	37	1	46120260	46120260	+	Missense_Mutation	SNP	C	A	A			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPC5	2262	broad.mit.edu	37	13	92345398	92345398	+	Intron	SNP	G	C	C			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR64	10149	broad.mit.edu	37	X	19031915	19031915	+	Missense_Mutation	SNP	G	C	C			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPSM1	26086	broad.mit.edu	37	9	139252515	139252515	+	Frame_Shift_Del	DEL	G	-	-			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPX4	2879	broad.mit.edu	37	19	1106305	1106305	+	Intron	SNP	G	A	A			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRAMD1C	54762	broad.mit.edu	37	3	113563456	113563456	+	Missense_Mutation	SNP	G	T	T			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRIP1	23426	broad.mit.edu	37	12	66788002	66788002	+	Silent	SNP	C	G	G			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRK6	2870	broad.mit.edu	37	5	176867850	176867850	+	Intron	SNP	C	T	T			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRM5	2915	broad.mit.edu	37	11	88583183	88583183	+	Missense_Mutation	SNP	A	T	T			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GTDC1	79712	broad.mit.edu	37	2	144764708	144764708	+	Intron	SNP	C	G	G			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GULP1	51454	broad.mit.edu	37	2	189448947	189448947	+	Intron	SNP	G	A	A			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HAPLN4	404037	broad.mit.edu	37	19	19373451	19373451	+	Intron	SNP	G	A	A			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HCFC1	3054	broad.mit.edu	37	X	153214697	153214697	+	3'UTR	SNP	T	G	G			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HCG4	54435	broad.mit.edu	37	6	29759973	29759973	+	RNA	SNP	G	A	A			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HDAC2	3066	broad.mit.edu	37	6	114264527	114264527	+	Missense_Mutation	SNP	C	T	T			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HDLBP	3069	broad.mit.edu	37	2	242194375	242194375	+	Intron	SNP	C	T	T			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HEATR7B2	133558	broad.mit.edu	37	5	41055876	41055876	+	Nonsense_Mutation	SNP	A	T	T			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HEMGN	55363	broad.mit.edu	37	9	100693073	100693073	+	Missense_Mutation	SNP	G	T	T			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HLA-C	3107	broad.mit.edu	37	6	31239513	31239513	+	Missense_Mutation	SNP	C	T	T	rs41548913		TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HMCN1	83872	broad.mit.edu	37	1	186023004	186023004	+	Frame_Shift_Del	DEL	G	-	-			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HPCAL4	51440	broad.mit.edu	37	1	40148229	40148229	+	Silent	SNP	C	T	T			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HPS4	89781	broad.mit.edu	37	22	26859974	26859974	+	Missense_Mutation	SNP	A	T	T			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HSD17B12	51144	broad.mit.edu	37	11	43702283	43702283	+	5'UTR	SNP	T	C	C			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HSD17B7P2	158160	broad.mit.edu	37	10	38647260	38647260	+	Missense_Mutation	SNP	G	C	C			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HSPA12B	116835	broad.mit.edu	37	20	3719387	3719388	+	Intron	DNP	CC	TT	TT			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HTR2C	3358	broad.mit.edu	37	X	114134858	114134858	+	Intron	SNP	G	A	A			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HTT	3064	broad.mit.edu	37	4	3225021	3225021	+	Intron	SNP	G	T	T			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ICAM5	7087	broad.mit.edu	37	19	10404521	10404521	+	Missense_Mutation	SNP	G	A	A			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IFIH1	64135	broad.mit.edu	37	2	163150261	163150261	+	Intron	SNP	G	T	T			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IFNA4	3441	broad.mit.edu	37	9	21187301	21187301	+	Missense_Mutation	SNP	A	T	T			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IFT122	55764	broad.mit.edu	37	3	129222991	129222991	+	Intron	SNP	A	G	G			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IFT122	55764	broad.mit.edu	37	3	129236548	129236548	+	Intron	SNP	G	A	A			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IGDCC3	9543	broad.mit.edu	37	15	65622213	65622213	+	Intron	SNP	G	T	T			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IGSF10	285313	broad.mit.edu	37	3	151176394	151176394	+	Missense_Mutation	SNP	C	A	A	rs138815446		TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL1R2	7850	broad.mit.edu	37	2	102626011	102626011	+	Intron	SNP	C	A	A			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IMP4	92856	broad.mit.edu	37	2	131102212	131102212	+	Silent	SNP	G	T	T			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IMPDH1	3614	broad.mit.edu	37	7	128032958	128032958	+	3'UTR	SNP	C	A	A			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IQCE	23288	broad.mit.edu	37	7	2645525	2645525	+	Missense_Mutation	SNP	C	T	T			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IREB2	3658	broad.mit.edu	37	15	78730689	78730689	+	Missense_Mutation	SNP	C	A	A			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IRX1	79192	broad.mit.edu	37	5	3601123	3601123	+	Missense_Mutation	SNP	C	G	G			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGA11	22801	broad.mit.edu	37	15	68632067	68632067	+	Intron	SNP	G	T	T			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGA8	8516	broad.mit.edu	37	10	15649708	15649708	+	Missense_Mutation	SNP	G	T	T			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGAM	3684	broad.mit.edu	37	16	31336387	31336387	+	Intron	SNP	A	G	G			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KALRN	8997	broad.mit.edu	37	3	124418854	124418854	+	Missense_Mutation	SNP	C	T	T			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNA1	3736	broad.mit.edu	37	12	5020916	5020916	+	Silent	SNP	G	A	A			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNH7	90134	broad.mit.edu	37	2	163302909	163302909	+	Silent	SNP	C	T	T			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNN2	3781	broad.mit.edu	37	5	113829247	113829247	+	Intron	SNP	C	T	T			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNQ2	3785	broad.mit.edu	37	20	62078213	62078213	+	Intron	SNP	C	A	A			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KDM1A	23028	broad.mit.edu	37	1	23409697	23409697	+	Missense_Mutation	SNP	G	A	A			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KDM3B	51780	broad.mit.edu	37	5	137727539	137727539	+	Missense_Mutation	SNP	A	T	T			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KEL	3792	broad.mit.edu	37	7	142641351	142641351	+	Intron	SNP	G	T	T			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA0754	643314	broad.mit.edu	37	1	39876924	39876924	+	Missense_Mutation	SNP	G	T	T			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA0922	23240	broad.mit.edu	37	4	154523898	154523898	+	Intron	SNP	C	A	A			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1274	27143	broad.mit.edu	37	10	72300887	72300887	+	Silent	SNP	G	T	T			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1614	57710	broad.mit.edu	37	1	180907659	180907659	+	Intron	SNP	C	G	G			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1712	80817	broad.mit.edu	37	4	175223359	175223359	+	Intron	SNP	A	G	G			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIDINS220	57498	broad.mit.edu	37	2	8873800	8873800	+	Missense_Mutation	SNP	A	G	G			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF19	124602	broad.mit.edu	37	17	72351374	72351374	+	Silent	SNP	C	A	A			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF1B	23095	broad.mit.edu	37	1	10397384	10397384	+	Intron	SNP	T	G	G			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF4B	285643	broad.mit.edu	37	5	154394083	154394083	+	Missense_Mutation	SNP	C	A	A			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF4B	285643	broad.mit.edu	37	5	154396412	154396412	+	Missense_Mutation	SNP	A	T	T			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF6	221458	broad.mit.edu	37	6	39513450	39513450	+	Missense_Mutation	SNP	A	T	T			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIRREL	55243	broad.mit.edu	37	1	158063633	158063633	+	Intron	SNP	G	T	T			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLHL38	340359	broad.mit.edu	37	8	124658213	124658213	+	Nonsense_Mutation	SNP	A	T	T			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRT6B	3854	broad.mit.edu	37	12	52841399	52841399	+	Intron	SNP	G	T	T			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRT72	140807	broad.mit.edu	37	12	52986255	52986255	+	Missense_Mutation	SNP	C	A	A			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRT74	121391	broad.mit.edu	37	12	52962032	52962032	+	Nonsense_Mutation	SNP	G	A	A			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRTAP10-4	386672	broad.mit.edu	37	21	45994771	45994771	+	Missense_Mutation	SNP	C	A	A			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMB1	3912	broad.mit.edu	37	7	107591767	107591767	+	Missense_Mutation	SNP	A	G	G			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMB4	22798	broad.mit.edu	37	7	107703285	107703285	+	Silent	SNP	G	T	T			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LCN1	3933	broad.mit.edu	37	9	138415157	138415157	+	Intron	SNP	C	G	G			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LCT	3938	broad.mit.edu	37	2	136564899	136564899	+	Missense_Mutation	SNP	C	A	A			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LELP1	149018	broad.mit.edu	37	1	153177438	153177438	+	Silent	SNP	C	G	G			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LEMD1	93273	broad.mit.edu	37	1	205389623	205389623	+	Silent	SNP	G	A	A			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LILRA1	11024	broad.mit.edu	37	19	55107955	55107955	+	Silent	SNP	A	G	G			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LILRB1	10859	broad.mit.edu	37	19	55143593	55143593	+	Missense_Mutation	SNP	C	T	T			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LIMS1	3987	broad.mit.edu	37	2	109276117	109276117	+	Missense_Mutation	SNP	C	T	T			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LMBR1L	55716	broad.mit.edu	37	12	49497572	49497572	+	Missense_Mutation	SNP	T	C	C			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LNX1	84708	broad.mit.edu	37	4	54327665	54327665	+	Missense_Mutation	SNP	T	C	C			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC157627	157627	broad.mit.edu	37	8	9760839	9760839	+	5'Flank	SNP	G	T	T			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC284232	284232	broad.mit.edu	37	13	19414102	19414102	+	RNA	SNP	C	T	T			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC374443	374443	broad.mit.edu	37	12	9795534	9795534	+	Intron	SNP	G	T	T			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC442421	442421	broad.mit.edu	37	9	66500743	66500743	+	RNA	SNP	G	A	A			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC645166	645166	broad.mit.edu	37	1	148932821	148932821	+	RNA	SNP	C	T	T			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC649330	649330	broad.mit.edu	37	1	12907393	12907393	+	Missense_Mutation	SNP	C	A	A	rs143857379	byFrequency	TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC654342	654342	broad.mit.edu	37	2	91843493	91843493	+	RNA	SNP	G	A	A			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC96610	96610	broad.mit.edu	37	22	22380839	22380839	+	RNA	SNP	C	A	A			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LONRF3	79836	broad.mit.edu	37	X	118112341	118112341	+	Missense_Mutation	SNP	C	G	G			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LPHN2	23266	broad.mit.edu	37	1	82408796	82408796	+	Missense_Mutation	SNP	G	A	A			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LPHN2	23266	broad.mit.edu	37	1	82437665	82437665	+	Intron	SNP	G	T	T			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP2	4036	broad.mit.edu	37	2	170053360	170053360	+	Intron	SNP	G	A	A			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC6	23639	broad.mit.edu	37	8	133637538	133637538	+	Silent	SNP	C	T	T			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC8D	55144	broad.mit.edu	37	1	90400997	90400997	+	Silent	SNP	C	G	G			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRTM3	347731	broad.mit.edu	37	10	68688212	68688212	+	Splice_Site	SNP	T	C	C			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MACROD2	140733	broad.mit.edu	37	20	14108521	14108521	+	Intron	SNP	C	T	T			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAD2L1BP	9587	broad.mit.edu	37	6	43607850	43607850	+	Silent	SNP	C	T	T			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAEL	84944	broad.mit.edu	37	1	166959003	166959003	+	Nonsense_Mutation	SNP	C	A	A			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAGEB4	4115	broad.mit.edu	37	X	30260394	30260394	+	Missense_Mutation	SNP	G	A	A			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAP3K1	4214	broad.mit.edu	37	5	56171242	56171242	+	Intron	SNP	G	T	T			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAST1	22983	broad.mit.edu	37	19	12979910	12979910	+	Missense_Mutation	SNP	G	C	C			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MATK	4145	broad.mit.edu	37	19	3779202	3779202	+	Intron	SNP	G	T	T			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MDC1	9656	broad.mit.edu	37	6	30676135	30676135	+	Splice_Site	SNP	C	A	A			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MED16	10025	broad.mit.edu	37	19	872078	872078	+	Missense_Mutation	SNP	C	T	T			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MED28	80306	broad.mit.edu	37	4	17616296	17616296	+	Missense_Mutation	SNP	G	T	T	rs10028056	byFrequency	TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MERTK	10461	broad.mit.edu	37	2	112767591	112767591	+	Missense_Mutation	SNP	A	G	G			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MFSD1	64747	broad.mit.edu	37	3	158527041	158527041	+	Silent	SNP	C	T	T			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MGAT5	4249	broad.mit.edu	37	2	135027974	135027974	+	Missense_Mutation	SNP	G	C	C			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MGLL	11343	broad.mit.edu	37	3	127411244	127411244	+	Intron	SNP	C	A	A			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MIA2	117153	broad.mit.edu	37	14	39703403	39703403	+	Missense_Mutation	SNP	C	T	T			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MIR1269	100302177	broad.mit.edu	37	4	67142337	67142337	+	5'Flank	SNP	A	T	T			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MIR526A1	574475	broad.mit.edu	37	19	54209372	54209372	+	5'Flank	SNP	C	A	A			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MLL4	9757	broad.mit.edu	37	19	36210585	36210585	+	Intron	SNP	G	A	A			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MLLT10	8028	broad.mit.edu	37	10	21884350	21884350	+	Missense_Mutation	SNP	C	T	T			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MMD2	221938	broad.mit.edu	37	7	4949536	4949536	+	Missense_Mutation	SNP	G	C	C			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MMP13	4322	broad.mit.edu	37	11	102825237	102825237	+	Missense_Mutation	SNP	G	T	T			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MOG	4340	broad.mit.edu	37	6	29638016	29638016	+	Intron	SNP	G	C	C			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MON2	23041	broad.mit.edu	37	12	62928628	62928628	+	Missense_Mutation	SNP	G	T	T			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MPO	4353	broad.mit.edu	37	17	56356880	56356880	+	Intron	SNP	G	T	T			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MPPED1	758	broad.mit.edu	37	22	43870629	43870629	+	Nonsense_Mutation	SNP	C	G	G	rs139800936	by1000genomes	TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MRGPRX2	117194	broad.mit.edu	37	11	19077996	19077996	+	Intron	SNP	G	C	C			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC16	94025	broad.mit.edu	37	19	9087924	9087924	+	Missense_Mutation	SNP	C	A	A			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC17	140453	broad.mit.edu	37	7	100680675	100680675	+	Missense_Mutation	SNP	G	C	C			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC17	140453	broad.mit.edu	37	7	100685025	100685025	+	Missense_Mutation	SNP	C	T	T			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH6	4624	broad.mit.edu	37	14	23866736	23866736	+	Intron	SNP	C	A	A			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYL1	4632	broad.mit.edu	37	2	211155712	211155712	+	Intron	SNP	A	G	G			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO19	80179	broad.mit.edu	37	17	34863665	34863665	+	Missense_Mutation	SNP	C	A	A			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO1D	4642	broad.mit.edu	37	17	31048075	31048075	+	Missense_Mutation	SNP	C	A	A			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYOF	26509	broad.mit.edu	37	10	95082799	95082799	+	Intron	SNP	C	T	T			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYT1L	23040	broad.mit.edu	37	2	1915812	1915812	+	Silent	SNP	G	A	A			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NAALADL2	254827	broad.mit.edu	37	3	175184977	175184977	+	Intron	SNP	A	T	T			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NARG2	79664	broad.mit.edu	37	15	60740324	60740324	+	Missense_Mutation	SNP	C	A	A			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBAS	51594	broad.mit.edu	37	2	15696984	15696984	+	Intron	SNP	T	A	A			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBAS	51594	broad.mit.edu	37	2	15701345	15701345	+	Silent	SNP	G	C	C			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBPF10	100132406	broad.mit.edu	37	1	145290406	145290406	+	5'Flank	SNP	T	A	A			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBPF10	100132406	broad.mit.edu	37	1	145304128	145304128	+	Intron	SNP	G	T	T			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBPF10	100132406	broad.mit.edu	37	1	145326097	145326097	+	Missense_Mutation	SNP	C	T	T			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBPF10	100132406	broad.mit.edu	37	1	145563121	145563121	+	Intron	SNP	G	T	T			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBPF1	55672	broad.mit.edu	37	1	16908279	16908279	+	Intron	SNP	C	A	A			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCKAP5	344148	broad.mit.edu	37	2	133542094	133542094	+	Missense_Mutation	SNP	C	A	A			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCL	4691	broad.mit.edu	37	2	232327375	232327375	+	Intron	SNP	T	G	G			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NEB	4703	broad.mit.edu	37	2	152521927	152521927	+	Missense_Mutation	SNP	G	T	T			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NETO1	81832	broad.mit.edu	37	18	70526210	70526210	+	Missense_Mutation	SNP	G	A	A			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NFASC	23114	broad.mit.edu	37	1	204943311	204943311	+	Silent	SNP	G	T	T			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NKD1	85407	broad.mit.edu	37	16	50583222	50583222	+	Intron	SNP	G	A	A			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLRP14	338323	broad.mit.edu	37	11	7065219	7065219	+	Intron	SNP	A	T	T			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NOS1	4842	broad.mit.edu	37	12	117715889	117715889	+	Missense_Mutation	SNP	C	G	G			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NOS2	4843	broad.mit.edu	37	17	26114991	26114991	+	Intron	SNP	C	A	A			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NPHP1	4867	broad.mit.edu	37	2	110901067	110901067	+	Intron	SNP	C	T	T			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NPHS1	4868	broad.mit.edu	37	19	36326759	36326759	+	Intron	SNP	G	C	C			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NPHS1	4868	broad.mit.edu	37	19	36336695	36336695	+	Missense_Mutation	SNP	G	C	C			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NPR1	4881	broad.mit.edu	37	1	153660055	153660055	+	Intron	SNP	T	A	A			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRXN1	9378	broad.mit.edu	37	2	50733626	50733626	+	Intron	SNP	T	A	A			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRXN2	9379	broad.mit.edu	37	11	64416107	64416107	+	Intron	SNP	C	A	A	rs34675608		TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRXN3	9369	broad.mit.edu	37	14	78709987	78709987	+	RNA	SNP	C	A	A			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NSUN5P1	155400	broad.mit.edu	37	7	75045373	75045373	+	Missense_Mutation	SNP	C	T	T			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NT5C1B	93034	broad.mit.edu	37	2	18768216	18768216	+	Intron	SNP	G	T	T			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NTAN1	123803	broad.mit.edu	37	16	15141370	15141370	+	Silent	SNP	G	A	A			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OBSCN	84033	broad.mit.edu	37	1	228504513	228504513	+	Missense_Mutation	SNP	G	T	T			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OC90	729330	broad.mit.edu	37	8	133051267	133051267	+	Silent	SNP	G	T	T			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ODC1	4953	broad.mit.edu	37	2	10583844	10583844	+	Missense_Mutation	SNP	C	T	T	rs116522452	by1000genomes	TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ODZ2	57451	broad.mit.edu	37	5	167630602	167630602	+	Intron	SNP	A	T	T			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OLIG3	167826	broad.mit.edu	37	6	137814807	137814807	+	Silent	SNP	C	T	T			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR10K1	391109	broad.mit.edu	37	1	158436195	158436195	+	Missense_Mutation	SNP	A	T	T			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2G6	391211	broad.mit.edu	37	1	248685829	248685829	+	Missense_Mutation	SNP	C	A	A	rs139958354	by1000genomes	TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2L13	284521	broad.mit.edu	37	1	248247427	248247427	+	Intron	SNP	C	A	A			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4C16	219428	broad.mit.edu	37	11	55339924	55339924	+	Missense_Mutation	SNP	C	G	G	rs79740520	byFrequency;by1000genomes	TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4K13	390433	broad.mit.edu	37	14	20502920	20502920	+	5'Flank	SNP	C	G	G			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4K1	79544	broad.mit.edu	37	14	20404276	20404276	+	Missense_Mutation	SNP	G	T	T			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4N2	390429	broad.mit.edu	37	14	20295546	20295546	+	5'Flank	SNP	C	G	G			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4N3P	390539	broad.mit.edu	37	15	22413709	22413709	+	Missense_Mutation	SNP	T	A	A			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4S1	256148	broad.mit.edu	37	11	48328205	48328205	+	Missense_Mutation	SNP	G	A	A			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR51I2	390064	broad.mit.edu	37	11	5475230	5475230	+	Missense_Mutation	SNP	C	A	A			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR5AU1	390445	broad.mit.edu	37	14	21623231	21623231	+	Silent	SNP	G	A	A			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR5P2	120065	broad.mit.edu	37	11	7818148	7818148	+	Missense_Mutation	SNP	C	A	A			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR5T2	219464	broad.mit.edu	37	11	55999849	55999849	+	Missense_Mutation	SNP	T	G	G			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR6N2	81442	broad.mit.edu	37	1	158746817	158746817	+	Missense_Mutation	SNP	A	T	T			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR7C1	26664	broad.mit.edu	37	19	14910285	14910285	+	Missense_Mutation	SNP	C	G	G			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR8B2	26595	broad.mit.edu	37	11	124253209	124253209	+	Missense_Mutation	SNP	C	G	G			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR8J1	219477	broad.mit.edu	37	11	56128574	56128574	+	Silent	SNP	T	A	A			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ORC1L	4998	broad.mit.edu	37	1	52861686	52861686	+	Intron	SNP	T	C	C			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OSR1	130497	broad.mit.edu	37	2	19553013	19553013	+	Missense_Mutation	SNP	G	C	C			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OXSR1	9943	broad.mit.edu	37	3	38287589	38287589	+	Silent	SNP	G	T	T			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
P4HA1	5033	broad.mit.edu	37	10	74803520	74803520	+	Intron	SNP	T	C	C			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PADI4	23569	broad.mit.edu	37	1	17657705	17657705	+	Intron	SNP	C	T	T			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAFAH1B2	5049	broad.mit.edu	37	11	117038152	117038152	+	Missense_Mutation	SNP	G	T	T			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PALM2-AKAP2	445815	broad.mit.edu	37	9	112899608	112899608	+	Nonsense_Mutation	SNP	C	G	G			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PALM2-AKAP2	445815	broad.mit.edu	37	9	112900057	112900057	+	Nonsense_Mutation	SNP	C	T	T			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PARL	55486	broad.mit.edu	37	3	183605618	183605618	+	5'Flank	SNP	T	A	A			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PARP4	143	broad.mit.edu	37	13	25017845	25017845	+	Silent	SNP	T	A	A			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHA10	56139	broad.mit.edu	37	5	140237382	140237382	+	Silent	SNP	G	A	A			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHA1	56147	broad.mit.edu	37	5	140166206	140166206	+	Missense_Mutation	SNP	G	A	A	rs148838866		TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHB18	54660	broad.mit.edu	37	5	140616204	140616204	+	Missense_Mutation	SNP	C	A	A			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHB4	56131	broad.mit.edu	37	5	140503277	140503277	+	Missense_Mutation	SNP	A	G	G			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHB5	26167	broad.mit.edu	37	5	140515983	140515983	+	Missense_Mutation	SNP	G	T	T			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHB8	56128	broad.mit.edu	37	5	140559014	140559014	+	Missense_Mutation	SNP	C	G	G			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCSK4	54760	broad.mit.edu	37	19	1487128	1487128	+	Intron	SNP	G	A	A			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDCD5	9141	broad.mit.edu	37	19	33073086	33073086	+	Intron	SNP	G	T	T	rs138654596	by1000genomes	TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE1C	5137	broad.mit.edu	37	7	31829844	31829844	+	Intron	SNP	G	T	T			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE6B	5158	broad.mit.edu	37	4	663805	663805	+	Intron	DEL	C	-	-			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDK2	5164	broad.mit.edu	37	17	48186727	48186727	+	Missense_Mutation	SNP	T	C	C			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PEX2	5828	broad.mit.edu	37	8	77895569	77895569	+	Missense_Mutation	SNP	C	A	A			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PHF15	23338	broad.mit.edu	37	5	133895718	133895718	+	Intron	SNP	G	T	T			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PHLPP2	23035	broad.mit.edu	37	16	71710350	71710350	+	Missense_Mutation	SNP	T	A	A			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIGK	10026	broad.mit.edu	37	1	77661195	77661195	+	Intron	SNP	C	A	A			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIGS	94005	broad.mit.edu	37	17	26890572	26890572	+	Intron	SNP	C	A	A			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIK3R6	146850	broad.mit.edu	37	17	8770791	8770791	+	Intron	SNP	A	G	G			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PKHD1L1	93035	broad.mit.edu	37	8	110460608	110460608	+	Missense_Mutation	SNP	A	T	T			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PKP1	5317	broad.mit.edu	37	1	201294883	201294883	+	Missense_Mutation	SNP	G	A	A			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLA2G7	7941	broad.mit.edu	37	6	46684773	46684773	+	Missense_Mutation	SNP	G	A	A			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLEC	5339	broad.mit.edu	37	8	145001521	145001545	+	Intron	DEL	CAGAGCCGTGGCCGCAGGGCACGCC	-	-			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLEKHA6	22874	broad.mit.edu	37	1	204197888	204197888	+	Silent	SNP	C	T	T			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLEKHB2	55041	broad.mit.edu	37	2	131951800	131951800	+	Intron	SNP	C	A	A			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLXNA4	91584	broad.mit.edu	37	7	131859587	131859587	+	Missense_Mutation	SNP	G	A	A			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POFUT2	23275	broad.mit.edu	37	21	46703273	46703273	+	Intron	SNP	C	A	A			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POLD1	5424	broad.mit.edu	37	19	50902595	50902595	+	Intron	SNP	C	A	A			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPARGC1A	10891	broad.mit.edu	37	4	23826016	23826016	+	Intron	SNP	G	T	T			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPP1R13B	23368	broad.mit.edu	37	14	104220700	104220700	+	Intron	SNP	G	A	A			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPP1R1C	151242	broad.mit.edu	37	2	182850701	182850701	+	5'UTR	SNP	G	T	T			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRAMEF11	440560	broad.mit.edu	37	1	12888465	12888465	+	Missense_Mutation	SNP	G	T	T			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRKAG3	53632	broad.mit.edu	37	2	219692034	219692034	+	Missense_Mutation	SNP	G	T	T			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRR23C	389152	broad.mit.edu	37	3	138763205	138763205	+	Silent	SNP	C	G	G			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRUNE2	158471	broad.mit.edu	37	9	79325382	79325382	+	Frame_Shift_Del	DEL	T	-	-			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSKH2	85481	broad.mit.edu	37	8	87060894	87060894	+	Missense_Mutation	SNP	A	C	C			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTGER2	5732	broad.mit.edu	37	14	52781431	52781431	+	Silent	SNP	G	T	T			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPN6	5777	broad.mit.edu	37	12	7064521	7064521	+	Intron	SNP	C	A	A			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRC	5788	broad.mit.edu	37	1	198703373	198703373	+	Intron	SNP	G	C	C			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRD	5789	broad.mit.edu	37	9	8748054	8748054	+	Intron	SNP	T	A	A	rs115637820	by1000genomes	TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRN2	5799	broad.mit.edu	37	7	158334236	158334236	+	Intron	SNP	C	A	A			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRR	5801	broad.mit.edu	37	12	71066471	71066471	+	Intron	SNP	C	G	G			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRT	11122	broad.mit.edu	37	20	41400257	41400257	+	Intron	SNP	G	C	C			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRZ1	5803	broad.mit.edu	37	7	121694245	121694245	+	Intron	SNP	G	A	A			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PXDN	7837	broad.mit.edu	37	2	1643180	1643180	+	Missense_Mutation	SNP	C	T	T			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAB2A	5862	broad.mit.edu	37	8	61471410	61471410	+	Splice_Site	SNP	G	C	C			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAB3GAP1	22930	broad.mit.edu	37	2	135907882	135907882	+	Intron	SNP	G	T	T			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAD50	10111	broad.mit.edu	37	5	131976663	131976663	+	Intron	SNP	T	C	C			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAD51AP2	729475	broad.mit.edu	37	2	17698928	17698928	+	Missense_Mutation	SNP	C	G	G			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RALGAPA1	253959	broad.mit.edu	37	14	36278087	36278087	+	5'UTR	SNP	C	A	A			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RALGAPA2	57186	broad.mit.edu	37	20	20563985	20563985	+	Intron	SNP	T	C	C			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RANBP3	8498	broad.mit.edu	37	19	5917862	5917862	+	Missense_Mutation	SNP	C	T	T			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RANBP3	8498	broad.mit.edu	37	19	5927933	5927933	+	Intron	SNP	G	A	A			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAP1B	5908	broad.mit.edu	37	12	69036763	69036763	+	Intron	SNP	C	T	T			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RARS2	57038	broad.mit.edu	37	6	88229941	88229941	+	Missense_Mutation	SNP	C	G	G			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RASGRF2	5924	broad.mit.edu	37	5	80363827	80363827	+	Intron	SNP	C	T	T			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RBM27	54439	broad.mit.edu	37	5	145634378	145634378	+	Intron	SNP	G	C	C			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RELN	5649	broad.mit.edu	37	7	103202244	103202244	+	Intron	SNP	A	C	C			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RELN	5649	broad.mit.edu	37	7	103215998	103215998	+	Missense_Mutation	SNP	T	C	C			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RFC5	5985	broad.mit.edu	37	12	118469111	118469111	+	3'UTR	SNP	A	G	G			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RFTN1	23180	broad.mit.edu	37	3	16475314	16475314	+	Intron	SNP	T	G	G			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RFX2	5990	broad.mit.edu	37	19	5997179	5997179	+	Silent	SNP	G	A	A	rs147306532		TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RGL2	5863	broad.mit.edu	37	6	33264242	33264242	+	Splice_Site	SNP	C	A	A			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RGS10	6001	broad.mit.edu	37	10	121286719	121286719	+	Intron	SNP	C	A	A			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RIMS1	22999	broad.mit.edu	37	6	73108845	73108845	+	Intron	SNP	C	A	A			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RIMS1	22999	broad.mit.edu	37	6	73108849	73108849	+	Intron	SNP	C	A	A			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNF152	220441	broad.mit.edu	37	18	59483393	59483393	+	Silent	SNP	G	A	A			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNF20	56254	broad.mit.edu	37	9	104302699	104302699	+	Intron	SNP	T	C	C			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNF215	200312	broad.mit.edu	37	22	30776237	30776237	+	Intron	SNP	G	A	A			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNF220	55182	broad.mit.edu	37	1	45091964	45091964	+	Intron	SNP	T	A	A			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNF5	6048	broad.mit.edu	37	6	32147865	32147865	+	Missense_Mutation	SNP	C	T	T			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ROBO4	54538	broad.mit.edu	37	11	124763789	124763789	+	Missense_Mutation	SNP	G	A	A			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ROCK2	9475	broad.mit.edu	37	2	11332366	11332366	+	Silent	SNP	A	G	G			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ROS1	6098	broad.mit.edu	37	6	117629963	117629963	+	Missense_Mutation	SNP	T	C	C			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPAP1	26015	broad.mit.edu	37	15	41820294	41820294	+	Intron	SNP	G	A	A			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPGRIP1L	23322	broad.mit.edu	37	16	53706851	53706852	+	Frame_Shift_Ins	INS	-	T	T	rs148808566		TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPGRIP1	57096	broad.mit.edu	37	14	21762760	21762760	+	Intron	SNP	G	C	C			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPS7	6201	broad.mit.edu	37	2	3624026	3624026	+	Intron	SNP	C	T	T			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RSRC1	51319	broad.mit.edu	37	3	157994018	157994018	+	Intron	SNP	G	T	T			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RTN4IP1	84816	broad.mit.edu	37	6	107035708	107035708	+	Missense_Mutation	SNP	C	A	A			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR3	6263	broad.mit.edu	37	15	34140553	34140553	+	Missense_Mutation	SNP	T	C	C			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SAP30L	79685	broad.mit.edu	37	5	153835450	153835450	+	Intron	SNP	C	T	T			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCIN	85477	broad.mit.edu	37	7	12683870	12683870	+	Silent	SNP	G	A	A			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCN7A	6332	broad.mit.edu	37	2	167319150	167319150	+	Intron	SNP	C	A	A			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SDC3	9672	broad.mit.edu	37	1	31351564	31351564	+	Missense_Mutation	SNP	G	C	C			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEMA4A	64218	broad.mit.edu	37	1	156126240	156126240	+	Missense_Mutation	SNP	A	G	G			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEMA5B	54437	broad.mit.edu	37	3	122645424	122645424	+	Silent	SNP	G	T	T			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SENP7	57337	broad.mit.edu	37	3	101133438	101133438	+	Intron	SNP	C	A	A			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEPT10	151011	broad.mit.edu	37	2	110332300	110332300	+	Missense_Mutation	SNP	T	C	C			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SETX	23064	broad.mit.edu	37	9	135171427	135171427	+	Intron	SNP	C	A	A			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SFRS8	6433	broad.mit.edu	37	12	132237594	132237594	+	Intron	SNP	T	C	C			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SGCA	6442	broad.mit.edu	37	17	48244787	48244787	+	Silent	SNP	G	A	A			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SGK223	157285	broad.mit.edu	37	8	8235375	8235376	+	Frame_Shift_Del	DEL	AG	-	-			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SGK3	23678	broad.mit.edu	37	8	67763160	67763160	+	Intron	SNP	G	T	T	rs55633875		TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SHC2	25759	broad.mit.edu	37	19	436423	436423	+	Silent	SNP	C	T	T			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SIGLEC12	89858	broad.mit.edu	37	19	52000177	52000177	+	Missense_Mutation	SNP	G	T	T			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SIK3	23387	broad.mit.edu	37	11	116728430	116728430	+	Intron	SNP	T	A	A			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SI	6476	broad.mit.edu	37	3	164760926	164760926	+	Missense_Mutation	SNP	G	C	C			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SKIL	6498	broad.mit.edu	37	3	170108188	170108188	+	Missense_Mutation	SNP	G	T	T			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLAIN2	57606	broad.mit.edu	37	4	48384770	48384770	+	Missense_Mutation	SNP	C	T	T			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC20A1	6574	broad.mit.edu	37	2	113420521	113420521	+	Silent	SNP	C	T	T			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC28A1	9154	broad.mit.edu	37	15	85488259	85488259	+	Intron	SNP	C	T	T			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC30A5	64924	broad.mit.edu	37	5	68404320	68404320	+	Intron	SNP	T	C	C			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC39A14	23516	broad.mit.edu	37	8	22273581	22273581	+	Intron	SNP	C	T	T			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC39A3	29985	broad.mit.edu	37	19	2732928	2732928	+	Missense_Mutation	SNP	C	A	A			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC39A4	55630	broad.mit.edu	37	8	145642092	145642092	+	Missense_Mutation	SNP	G	T	T			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC6A18	348932	broad.mit.edu	37	5	1232411	1232411	+	Missense_Mutation	SNP	C	A	A			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC6A4	6532	broad.mit.edu	37	17	28544443	28544443	+	Intron	SNP	G	T	T			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLCO1B1	10599	broad.mit.edu	37	12	21353597	21353597	+	Missense_Mutation	SNP	A	T	T			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLCO5A1	81796	broad.mit.edu	37	8	70706557	70706557	+	Intron	SNP	G	T	T			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLIT2	9353	broad.mit.edu	37	4	20530758	20530758	+	Intron	SNP	G	T	T			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMARCA2	6595	broad.mit.edu	37	9	2161967	2161967	+	Intron	SNP	G	T	T			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMC1A	8243	broad.mit.edu	37	X	53409448	53409448	+	Silent	SNP	C	A	A			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNORD115-20	100033460	broad.mit.edu	37	15	25465810	25465810	+	Intron	SNP	G	A	A			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNTG1	54212	broad.mit.edu	37	8	51465646	51465646	+	Silent	SNP	C	A	A			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNX16	64089	broad.mit.edu	37	8	82713903	82713903	+	Intron	SNP	C	T	T			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SOX17	64321	broad.mit.edu	37	8	55371036	55371036	+	Intron	SNP	G	T	T			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SOX5	6660	broad.mit.edu	37	12	24048570	24048570	+	Intron	SNP	G	A	A			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SOX7	83595	broad.mit.edu	37	8	10583302	10583302	+	Missense_Mutation	SNP	G	C	C			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SP140	11262	broad.mit.edu	37	2	231150584	231150584	+	Intron	SNP	A	T	T			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPAG6	9576	broad.mit.edu	37	10	22657341	22657341	+	Intron	SNP	T	C	C			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPEM1	374768	broad.mit.edu	37	17	7324850	7324850	+	Missense_Mutation	SNP	C	A	A			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPIN3	169981	broad.mit.edu	37	X	57020669	57020669	+	Missense_Mutation	SNP	C	G	G			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SRCAP	10847	broad.mit.edu	37	16	30748760	30748760	+	Missense_Mutation	SNP	C	T	T			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ST6GAL2	84620	broad.mit.edu	37	2	107446536	107446536	+	Missense_Mutation	SNP	G	C	C			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STAB2	55576	broad.mit.edu	37	12	104149163	104149163	+	Silent	SNP	C	G	G			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STARD8	9754	broad.mit.edu	37	X	67942347	67942347	+	Silent	SNP	G	T	T			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STAT6	6778	broad.mit.edu	37	12	57501993	57501993	+	Silent	SNP	G	A	A			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STK31	56164	broad.mit.edu	37	7	23760880	23760880	+	Intron	SNP	C	G	G			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STK32B	55351	broad.mit.edu	37	4	5461853	5461853	+	Silent	SNP	C	T	T			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SUMF1	285362	broad.mit.edu	37	3	4458925	4458925	+	Missense_Mutation	SNP	G	C	C			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SVIL	6840	broad.mit.edu	37	10	29811266	29811266	+	Intron	SNP	G	A	A			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYDE2	84144	broad.mit.edu	37	1	85634849	85634849	+	Missense_Mutation	SNP	C	G	G			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYDE2	84144	broad.mit.edu	37	1	85647781	85647781	+	Missense_Mutation	SNP	C	G	G			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYNE1	23345	broad.mit.edu	37	6	152489176	152489176	+	Intron	SNP	C	G	G			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYT10	341359	broad.mit.edu	37	12	33560221	33560221	+	Nonsense_Mutation	SNP	C	A	A			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYT3	84258	broad.mit.edu	37	19	51128750	51128750	+	Missense_Mutation	SNP	T	A	A			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYT3	84258	broad.mit.edu	37	19	51135967	51135967	+	Silent	SNP	G	T	T			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAS2R20	259295	broad.mit.edu	37	12	11150167	11150167	+	Missense_Mutation	SNP	C	A	A			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBX20	57057	broad.mit.edu	37	7	35271049	35271049	+	Intron	SNP	G	T	T			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TCEB1	6921	broad.mit.edu	37	8	74868111	74868111	+	Intron	SNP	T	C	C			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TCF4	6925	broad.mit.edu	37	18	52928653	52928653	+	Intron	SNP	C	G	G			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TEKT4	150483	broad.mit.edu	37	2	95539718	95539718	+	Missense_Mutation	SNP	G	C	C			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TET1	80312	broad.mit.edu	37	10	70451167	70451167	+	Missense_Mutation	SNP	G	T	T			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TFEC	22797	broad.mit.edu	37	7	115624558	115624558	+	5'UTR	SNP	G	A	A			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TFR2	7036	broad.mit.edu	37	7	100230838	100230838	+	Intron	SNP	C	A	A			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TG	7038	broad.mit.edu	37	8	133948035	133948035	+	Missense_Mutation	SNP	G	A	A			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TIE1	7075	broad.mit.edu	37	1	43777704	43777705	+	Frame_Shift_Ins	INS	-	A	A			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TKT	7086	broad.mit.edu	37	3	53262099	53262099	+	Missense_Mutation	SNP	A	T	T			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TLR6	10333	broad.mit.edu	37	4	38829311	38829311	+	Missense_Mutation	SNP	A	C	C			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM106C	79022	broad.mit.edu	37	12	48359580	48359580	+	Intron	SNP	A	G	G			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM132B	114795	broad.mit.edu	37	12	126068361	126068361	+	Intron	SNP	C	T	T			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM35	59353	broad.mit.edu	37	X	100349972	100349972	+	3'UTR	SNP	T	C	C			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMPRSS11A	339967	broad.mit.edu	37	4	68812313	68812313	+	Intron	SNP	G	T	T			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNFAIP6	7130	broad.mit.edu	37	2	152230150	152230150	+	Intron	SNP	G	C	C			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNFSF4	7292	broad.mit.edu	37	1	173176418	173176418	+	Translation_Start_Site	SNP	C	A	A			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNKS1BP1	85456	broad.mit.edu	37	11	57076490	57076490	+	Missense_Mutation	SNP	T	A	A			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNNT3	7140	broad.mit.edu	37	11	1950514	1950514	+	Intron	SNP	G	T	T			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNRC6C	57690	broad.mit.edu	37	17	76087626	76087626	+	Missense_Mutation	SNP	C	G	G			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TOLLIP	54472	broad.mit.edu	37	11	1316878	1316878	+	Silent	SNP	T	C	C			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TP53	7157	broad.mit.edu	37	17	7574026	7574026	+	Missense_Mutation	SNP	C	A	A			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPR	7175	broad.mit.edu	37	1	186315293	186315293	+	Missense_Mutation	SNP	T	C	C			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPTE2	93492	broad.mit.edu	37	13	20000696	20000696	+	Intron	SNP	G	C	C			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPTE	7179	broad.mit.edu	37	21	10935063	10935063	+	Intron	SNP	A	T	T			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRAK2	66008	broad.mit.edu	37	2	202260067	202260067	+	Missense_Mutation	SNP	C	A	A			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TREML4	285852	broad.mit.edu	37	6	41196869	41196869	+	Intron	SNP	A	T	T	rs144109577	by1000genomes	TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TREML4	285852	broad.mit.edu	37	6	41197729	41197729	+	Intron	SNP	C	G	G			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRHDE	29953	broad.mit.edu	37	12	72867050	72867051	+	Intron	INS	-	A	A			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIM48	79097	broad.mit.edu	37	11	55032470	55032470	+	Missense_Mutation	SNP	G	T	T			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIM48	79097	broad.mit.edu	37	11	55032845	55032845	+	Intron	SNP	G	T	T			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIM50	135892	broad.mit.edu	37	7	72732638	72732638	+	Intron	SNP	G	T	T			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIM58	25893	broad.mit.edu	37	1	248039170	248039170	+	Intron	SNP	C	A	A			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPC4	7223	broad.mit.edu	37	13	38225620	38225620	+	Intron	SNP	G	T	T			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRRAP	8295	broad.mit.edu	37	7	98490257	98490257	+	Intron	SNP	A	G	G			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTC17	55761	broad.mit.edu	37	11	43511885	43511885	+	Missense_Mutation	SNP	C	T	T			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179443697	179443697	+	Missense_Mutation	SNP	A	T	T			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179568920	179568920	+	Silent	SNP	G	T	T			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179593685	179593686	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179603970	179603970	+	Missense_Mutation	SNP	C	G	G			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TUBB8	347688	broad.mit.edu	37	10	94528	94528	+	Intron	SNP	G	A	A			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TXNDC6	347736	broad.mit.edu	37	3	138043808	138043808	+	Intron	SNP	G	T	T			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBE2J1	51465	broad.mit.edu	37	6	90045059	90045059	+	Missense_Mutation	SNP	G	T	T			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
URB2	9816	broad.mit.edu	37	1	229783177	229783177	+	Intron	SNP	A	T	T			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP13	8975	broad.mit.edu	37	3	179437811	179437811	+	Missense_Mutation	SNP	C	A	A			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP54	159195	broad.mit.edu	37	10	75264938	75264938	+	Intron	SNP	C	A	A			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP9X	8239	broad.mit.edu	37	X	41088852	41088852	+	Missense_Mutation	SNP	G	T	T			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP9Y	8287	broad.mit.edu	37	Y	14888554	14888554	+	Intron	SNP	G	C	C			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	21537053	21537053	+	IGR	SNP	G	A	A			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	22515015	22515015	+	IGR	SNP	A	G	G			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	46216437	46216437	+	IGR	SNP	C	T	T			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	47729315	47729315	+	IGR	SNP	C	A	A			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	81344170	81344170	+	IGR	SNP	C	A	A			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	122920477	122920477	+	IGR	SNP	C	A	A			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	124134898	124134898	+	IGR	SNP	A	T	T			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	39183324	39183324	+	IGR	SNP	C	T	T			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	4744173	4744173	+	IGR	SNP	T	G	G			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	5114000	5114000	+	IGR	SNP	C	G	G			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	51436289	51436290	+	IGR	DNP	CC	AA	AA			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	55259380	55259380	+	IGR	SNP	C	A	A			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	56143076	56143076	+	IGR	SNP	C	A	A			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	94534357	94534357	+	IGR	SNP	C	T	T			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	20148702	20148703	+	IGR	DNP	CC	GA	GA			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	32403424	32403424	+	IGR	SNP	C	A	A			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	32447299	32447299	+	IGR	SNP	C	T	T			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	33853751	33853751	+	IGR	SNP	C	A	A			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	34571154	34571154	+	IGR	SNP	C	A	A			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	63384784	63384784	+	IGR	SNP	C	A	A			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	21544629	21544629	+	IGR	SNP	G	A	A			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	28999182	28999182	+	IGR	DEL	G	-	-			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	15255080	15255080	+	IGR	SNP	G	T	T			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	59285704	59285704	+	IGR	SNP	C	A	A			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	61602601	61602601	+	IGR	SNP	T	C	C			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	82693	82693	+	IGR	SNP	C	A	A			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	22497917	22497917	+	IGR	SNP	T	C	C			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	27732215	27732216	+	IGR	INS	-	C	C	rs74197760		TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	36988980	36988980	+	IGR	SNP	C	A	A			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	106434775	106434775	+	IGR	SNP	T	G	G			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	109051625	109051625	+	IGR	SNP	C	T	T			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	120151462	120151462	+	IGR	SNP	G	T	T			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	149102975	149102975	+	IGR	SNP	C	A	A			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	158494888	158494888	+	IGR	SNP	C	T	T			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	201947949	201947949	+	IGR	SNP	A	G	G			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	26846118	26846118	+	IGR	SNP	A	T	T			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	77166394	77166394	+	IGR	SNP	G	C	C			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	10367700	10367700	+	IGR	SNP	G	T	T			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	21468883	21468883	+	IGR	SNP	C	A	A			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	15164933	15164933	+	IGR	SNP	G	C	C			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	22	34985173	34985173	+	IGR	SNP	G	C	C			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	105295023	105295023	+	IGR	SNP	T	C	C			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	127315593	127315593	+	IGR	SNP	A	T	T			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	131258114	131258114	+	IGR	SNP	A	G	G			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	137087437	137087437	+	IGR	SNP	T	A	A			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	146584725	146584725	+	IGR	SNP	A	T	T			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	154227559	154227559	+	IGR	SNP	C	A	A			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	159710297	159710297	+	IGR	SNP	G	T	T			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	175175475	175175475	+	IGR	SNP	T	A	A			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	182559481	182559481	+	IGR	SNP	G	T	T			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	50105943	50105943	+	IGR	SNP	C	A	A			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	52798407	52798407	+	IGR	SNP	G	T	T			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	81422280	81422280	+	IGR	SNP	C	A	A			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	92076491	92076491	+	IGR	SNP	G	A	A			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	92145551	92145551	+	IGR	SNP	G	T	T			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	29129972	29129972	+	IGR	SNP	C	T	T			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	68685887	68685887	+	IGR	SNP	A	G	G			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	33012657	33012657	+	IGR	SNP	C	G	G			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	4896294	4896294	+	IGR	SNP	C	T	T			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	105752825	105752826	+	IGR	INS	-	T	T			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	136193840	136193840	+	IGR	SNP	G	T	T			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	165456286	165456286	+	IGR	SNP	G	C	C			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	23303703	23303703	+	IGR	SNP	C	A	A			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	70988365	70988365	+	IGR	SNP	A	G	G			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	98015208	98015208	+	IGR	SNP	C	A	A			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	111244811	111244811	+	IGR	SNP	G	C	C			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	27483000	27483000	+	IGR	SNP	C	A	A			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	54490267	54490267	+	IGR	SNP	C	G	G			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	53255863	53255863	+	IGR	SNP	G	T	T			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	57832890	57832890	+	IGR	SNP	C	T	T			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	9766117	9766117	+	IGR	SNP	G	A	A			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	13599967	13599967	+	IGR	SNP	G	A	A			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	104264069	104264069	+	IGR	SNP	A	G	G			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	125513069	125513069	+	IGR	SNP	C	T	T			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	120337006	120337006	+	IGR	SNP	C	A	A			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	144711830	144711830	+	IGR	SNP	C	A	A			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	92644018	92644018	+	IGR	SNP	C	A	A			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	Y	28687273	28687273	+	IGR	SNP	C	A	A			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	Y	5661707	5661707	+	IGR	SNP	G	T	T			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	Y	7555826	7555826	+	IGR	SNP	T	C	C			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	Y	9150385	9150385	+	IGR	SNP	C	A	A			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VPS28	51160	broad.mit.edu	37	8	145651592	145651592	+	Splice_Site	SNP	C	A	A			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR13	64743	broad.mit.edu	37	X	48460278	48460278	+	Missense_Mutation	SNP	A	G	G			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR19	57728	broad.mit.edu	37	4	39280317	39280317	+	Intron	SNP	G	A	A			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR64	128025	broad.mit.edu	37	1	241946635	241946635	+	Missense_Mutation	SNP	T	A	A			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WHSC1L1	54904	broad.mit.edu	37	8	38189081	38189081	+	Silent	SNP	C	T	T			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
YTHDC2	64848	broad.mit.edu	37	5	112899487	112899487	+	Intron	SNP	G	A	A			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZAN	7455	broad.mit.edu	37	7	100395402	100395402	+	3'UTR	SNP	A	G	G			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZC3H13	23091	broad.mit.edu	37	13	46543169	46543169	+	Silent	SNP	C	A	A			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZCCHC11	23318	broad.mit.edu	37	1	52991905	52991905	+	Silent	SNP	C	T	T			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZCCHC2	54877	broad.mit.edu	37	18	60241328	60241328	+	Missense_Mutation	SNP	A	G	G			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZCCHC4	29063	broad.mit.edu	37	4	25317109	25317109	+	Intron	SNP	A	G	G			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZDHHC19	131540	broad.mit.edu	37	3	195937568	195937568	+	Missense_Mutation	SNP	C	A	A			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZFP161	7541	broad.mit.edu	37	18	5291531	5291531	+	Missense_Mutation	SNP	G	T	T			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZFP82	284406	broad.mit.edu	37	19	36883979	36883979	+	Silent	SNP	G	T	T	rs61741561	byFrequency;by1000genomes	TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZFP91	80829	broad.mit.edu	37	11	58380279	58380279	+	Missense_Mutation	SNP	G	T	T			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZKSCAN4	387032	broad.mit.edu	37	6	28213789	28213789	+	Intron	SNP	C	T	T			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZMAT4	79698	broad.mit.edu	37	8	40554959	40554959	+	Intron	SNP	C	A	A			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF117	51351	broad.mit.edu	37	7	64442298	64442298	+	Intron	SNP	A	G	G			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF229	7772	broad.mit.edu	37	19	44946727	44946727	+	Intron	SNP	G	T	T			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF253	56242	broad.mit.edu	37	19	19989390	19989390	+	Missense_Mutation	SNP	A	C	C			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF266	10781	broad.mit.edu	37	19	9523936	9523936	+	3'UTR	SNP	G	A	A			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF28	7576	broad.mit.edu	37	19	53304727	53304727	+	Missense_Mutation	SNP	C	T	T			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF304	57343	broad.mit.edu	37	19	57868288	57868288	+	Missense_Mutation	SNP	G	T	T			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF318	24149	broad.mit.edu	37	6	43323188	43323188	+	Silent	SNP	G	A	A			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF350	59348	broad.mit.edu	37	19	52468138	52468138	+	Missense_Mutation	SNP	T	C	C			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF391	346157	broad.mit.edu	37	6	27368575	27368575	+	Silent	SNP	T	C	C			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF395	55893	broad.mit.edu	37	8	28206337	28206337	+	Missense_Mutation	SNP	C	A	A			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF431	170959	broad.mit.edu	37	19	21366254	21366255	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF534	147658	broad.mit.edu	37	19	52934612	52934612	+	5'Flank	SNP	A	G	G			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF608	57507	broad.mit.edu	37	5	123980150	123980150	+	Missense_Mutation	SNP	G	C	C			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF613	79898	broad.mit.edu	37	19	52448120	52448120	+	Missense_Mutation	SNP	G	T	T			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF638	27332	broad.mit.edu	37	2	71631177	71631177	+	Intron	SNP	G	C	C			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF678	339500	broad.mit.edu	37	1	227842427	227842427	+	Missense_Mutation	SNP	G	T	T	rs145397350		TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF780B	163131	broad.mit.edu	37	19	40556272	40556272	+	5'UTR	SNP	T	A	A			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF883	169834	broad.mit.edu	37	9	115759405	115759405	+	Missense_Mutation	SNP	C	G	G			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZP2	7783	broad.mit.edu	37	16	21214498	21214498	+	Silent	SNP	T	C	C			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZRANB3	84083	broad.mit.edu	37	2	135988167	135988167	+	Missense_Mutation	SNP	C	G	G			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	22948425	22948425	+	Intron	SNP	G	T	T			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	23019543	23019543	+	Missense_Mutation	SNP	G	T	T			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	28734290	28734290	+	3'UTR	SNP	G	T	T			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	31093581	31093581	+	5'Flank	SNP	C	A	A			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	79042345	79042345	+	5'Flank	SNP	G	C	C			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	16723895	16723895	+	Intron	SNP	A	G	G			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	25749241	25749242	+	RNA	DNP	GG	AT	AT			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	45158198	45158198	+	Intron	SNP	G	A	A	rs113414693		TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	89428222	89428222	+	Intron	SNP	C	A	A			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	142111868	142111868	+	Intron	DEL	G	-	-			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	148978639	148978639	+	Intron	SNP	G	T	T			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	38289292	38289292	+	Intron	SNP	C	A	A			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
