Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer
AADACL3	126767	broad.mit.edu	37	1	12785996	12785996	+	3'UTR	SNP	G	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCA11P	79963	broad.mit.edu	37	4	420484	420484	+	Missense_Mutation	SNP	T	C	C			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCB1	5243	broad.mit.edu	37	7	87135292	87135292	+	Missense_Mutation	SNP	A	G	G			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCB1	5243	broad.mit.edu	37	7	87173393	87173393	+	Intron	SNP	A	G	G			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCC11	85320	broad.mit.edu	37	16	48248819	48248819	+	Silent	SNP	G	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCD2	225	broad.mit.edu	37	12	39967542	39967542	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCG1	9619	broad.mit.edu	37	21	43707973	43707973	+	Intron	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCG4	64137	broad.mit.edu	37	11	119029525	119029525	+	Intron	SNP	G	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABI3BP	25890	broad.mit.edu	37	3	100617486	100617486	+	Intron	SNP	C	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABL2	27	broad.mit.edu	37	1	179102287	179102287	+	Intron	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABP1	26	broad.mit.edu	37	7	150553761	150553761	+	Missense_Mutation	SNP	C	G	G			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACAP1	9744	broad.mit.edu	37	17	7245801	7245801	+	Intron	SNP	G	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACAP1	9744	broad.mit.edu	37	17	7246801	7246801	+	Missense_Mutation	SNP	C	G	G			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACBD7	414149	broad.mit.edu	37	10	15063970	15063970	+	Intron	SNP	A	G	G			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACLY	47	broad.mit.edu	37	17	40054107	40054107	+	Intron	SNP	G	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACSM2A	123876	broad.mit.edu	37	16	20487119	20487119	+	Intron	SNP	G	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACSM2B	348158	broad.mit.edu	37	16	20563612	20563612	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACTN3	89	broad.mit.edu	37	11	66329720	66329720	+	Intron	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM19	8728	broad.mit.edu	37	5	156918640	156918640	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM6	8755	broad.mit.edu	37	14	106805449	106805449	+	RNA	SNP	G	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM6	8755	broad.mit.edu	37	14	106926588	106926588	+	Intron	SNP	C	G	G			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM6	8755	broad.mit.edu	37	14	107048564	107048564	+	Intron	SNP	G	T	T	rs145028049	by1000genomes	TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMDEC1	27299	broad.mit.edu	37	8	24254778	24254778	+	Intron	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS10	81794	broad.mit.edu	37	19	8656874	8656875	+	Frame_Shift_Ins	INS	-	G	G			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS18	170692	broad.mit.edu	37	16	77317892	77317892	+	Nonsense_Mutation	SNP	G	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS2	9509	broad.mit.edu	37	5	178555076	178555076	+	Missense_Mutation	SNP	T	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS5	11096	broad.mit.edu	37	21	28306969	28306969	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS9	56999	broad.mit.edu	37	3	64672544	64672544	+	Silent	SNP	C	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADIPOR2	79602	broad.mit.edu	37	12	1895226	1895226	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADNP	23394	broad.mit.edu	37	20	49510039	49510039	+	Silent	SNP	C	T	T	rs139951165		TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AFF2	2334	broad.mit.edu	37	X	148039860	148039860	+	Intron	SNP	G	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AFF2	2334	broad.mit.edu	37	X	148072807	148072807	+	Missense_Mutation	SNP	T	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AFP	174	broad.mit.edu	37	4	74313357	74313357	+	Missense_Mutation	SNP	A	G	G			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AIM1	202	broad.mit.edu	37	6	106987153	106987153	+	Intron	SNP	C	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AKAP11	11215	broad.mit.edu	37	13	42869861	42869861	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AKAP6	9472	broad.mit.edu	37	14	33147707	33147708	+	Intron	INS	-	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALAS2	212	broad.mit.edu	37	X	55035570	55035570	+	3'UTR	SNP	A	C	C			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALDH1B1	219	broad.mit.edu	37	9	38396132	38396132	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALDH1L1	10840	broad.mit.edu	37	3	125877523	125877523	+	Intron	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALDH9A1	223	broad.mit.edu	37	1	165636479	165636479	+	Intron	SNP	T	C	C			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALMS1	7840	broad.mit.edu	37	2	73675761	73675761	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALPK2	115701	broad.mit.edu	37	18	56184325	56184325	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AMAC1	146861	broad.mit.edu	37	17	33520262	33520262	+	3'UTR	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AMPD1	270	broad.mit.edu	37	1	115222181	115222181	+	Intron	SNP	G	C	C			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AMPD2	271	broad.mit.edu	37	1	110169256	110169256	+	Intron	SNP	G	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANAPC2	29882	broad.mit.edu	37	9	140075172	140075172	+	Intron	SNP	C	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANK1	286	broad.mit.edu	37	8	41548121	41548121	+	Intron	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKMY1	51281	broad.mit.edu	37	2	241463637	241463637	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKRD1	27063	broad.mit.edu	37	10	92678499	92678499	+	Intron	SNP	G	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKRD30A	91074	broad.mit.edu	37	10	37506819	37506819	+	Intron	SNP	C	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKRD36	375248	broad.mit.edu	37	2	97853016	97853016	+	Intron	SNP	T	C	C			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANP32C	23520	broad.mit.edu	37	4	165118707	165118707	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANTXR1	84168	broad.mit.edu	37	2	69379400	69379400	+	Intron	SNP	A	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANXA10	11199	broad.mit.edu	37	4	169105768	169105768	+	Missense_Mutation	SNP	A	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AP3B2	8120	broad.mit.edu	37	15	83333005	83333005	+	Intron	SNP	C	G	G			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
APCS	325	broad.mit.edu	37	1	159558097	159558097	+	Missense_Mutation	SNP	A	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
APOA4	337	broad.mit.edu	37	11	116692768	116692768	+	Intron	SNP	G	C	C			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
APOB	338	broad.mit.edu	37	2	21233989	21233989	+	Silent	SNP	G	C	C			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARFGEF1	10565	broad.mit.edu	37	8	68131718	68131718	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGAP17	55114	broad.mit.edu	37	16	24979910	24979910	+	Intron	SNP	T	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGAP20	57569	broad.mit.edu	37	11	110461533	110461533	+	Missense_Mutation	SNP	C	G	G			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGAP36	158763	broad.mit.edu	37	X	130215907	130215907	+	Intron	SNP	G	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARMCX2	9823	broad.mit.edu	37	X	100911043	100911043	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARSF	416	broad.mit.edu	37	X	3007790	3007790	+	Intron	SNP	G	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARSJ	79642	broad.mit.edu	37	4	114823441	114823441	+	Missense_Mutation	SNP	T	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASPH	444	broad.mit.edu	37	8	62491157	62491158	+	Intron	DNP	CA	AG	AG			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASPH	444	broad.mit.edu	37	8	62550537	62550537	+	Silent	SNP	A	G	G			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASTN1	460	broad.mit.edu	37	1	176903321	176903321	+	Nonsense_Mutation	SNP	G	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASXL3	80816	broad.mit.edu	37	18	31323007	31323007	+	Silent	SNP	G	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATF6B	1388	broad.mit.edu	37	6	32087558	32087558	+	Intron	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATG4A	115201	broad.mit.edu	37	X	107380532	107380532	+	Intron	SNP	G	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATL1	51062	broad.mit.edu	37	14	51087337	51087337	+	Nonsense_Mutation	SNP	A	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATM	472	broad.mit.edu	37	11	108122517	108122517	+	Intron	SNP	C	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATM	472	broad.mit.edu	37	11	108183154	108183154	+	Nonsense_Mutation	SNP	G	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATM	472	broad.mit.edu	37	11	108205768	108205768	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP10B	23120	broad.mit.edu	37	5	160047239	160047239	+	Intron	SNP	G	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP10B	23120	broad.mit.edu	37	5	160047932	160047932	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP11C	286410	broad.mit.edu	37	X	138908907	138908907	+	Missense_Mutation	SNP	A	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP13A2	23400	broad.mit.edu	37	1	17330859	17330859	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP13A5	344905	broad.mit.edu	37	3	193036894	193036894	+	Missense_Mutation	SNP	G	T	T	rs74371245	byFrequency;by1000genomes	TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP1B4	23439	broad.mit.edu	37	X	119510427	119510427	+	Intron	SNP	G	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP2B3	492	broad.mit.edu	37	X	152825205	152825205	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP2C1	27032	broad.mit.edu	37	3	130713029	130713029	+	Intron	SNP	A	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP4A	495	broad.mit.edu	37	19	36046249	36046249	+	Intron	SNP	G	C	C			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP5G3	518	broad.mit.edu	37	2	176049379	176049379	+	5'Flank	SNP	G	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP6V1G3	127124	broad.mit.edu	37	1	198509685	198509685	+	Intron	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP7A	538	broad.mit.edu	37	X	77218100	77218100	+	Intron	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP7A	538	broad.mit.edu	37	X	77284981	77284981	+	Intron	SNP	T	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP8B4	79895	broad.mit.edu	37	15	50193542	50193542	+	Intron	SNP	G	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATRNL1	26033	broad.mit.edu	37	10	117001387	117001387	+	Silent	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATRNL1	26033	broad.mit.edu	37	10	117704361	117704361	+	3'UTR	SNP	T	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATRX	546	broad.mit.edu	37	X	76845435	76845435	+	Intron	SNP	G	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATXN7L3	56970	broad.mit.edu	37	17	42274678	42274678	+	Missense_Mutation	SNP	T	C	C			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AVL9	23080	broad.mit.edu	37	7	32591090	32591090	+	Intron	SNP	A	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AVPR2	554	broad.mit.edu	37	X	153171777	153171777	+	Missense_Mutation	SNP	A	G	G			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
B3GALTL	145173	broad.mit.edu	37	13	31834963	31834963	+	Intron	SNP	G	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
B4GALT5	9334	broad.mit.edu	37	20	48263586	48263586	+	Missense_Mutation	SNP	T	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BAAT	570	broad.mit.edu	37	9	104125073	104125073	+	Silent	SNP	A	C	C			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BAGE2	85319	broad.mit.edu	37	21	11039181	11039181	+	3'UTR	SNP	G	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BAHCC1	57597	broad.mit.edu	37	17	79419698	79419698	+	Intron	SNP	G	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BAI1	575	broad.mit.edu	37	8	143614706	143614706	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BAZ2B	29994	broad.mit.edu	37	2	160287467	160287467	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BCAN	63827	broad.mit.edu	37	1	156622549	156622549	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BCL9	607	broad.mit.edu	37	1	147092304	147092304	+	Silent	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BECN1	8678	broad.mit.edu	37	17	40962758	40962758	+	3'UTR	DEL	C	-	-			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BEND4	389206	broad.mit.edu	37	4	42145907	42145907	+	Missense_Mutation	SNP	T	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BICC1	80114	broad.mit.edu	37	10	60566396	60566396	+	Intron	SNP	C	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BIRC6	57448	broad.mit.edu	37	2	32724814	32724814	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BLCAP	10904	broad.mit.edu	37	20	36158975	36158975	+	5'Flank	SNP	G	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BMP1	649	broad.mit.edu	37	8	22053224	22053224	+	Intron	SNP	A	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BRCA1	672	broad.mit.edu	37	17	41203207	41203207	+	Intron	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BRIP1	83990	broad.mit.edu	37	17	59760697	59760697	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BRS3	680	broad.mit.edu	37	X	135574143	135574143	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BRSK2	9024	broad.mit.edu	37	11	1471120	1471120	+	Intron	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BST2	684	broad.mit.edu	37	19	17515091	17515091	+	Intron	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BTAF1	9044	broad.mit.edu	37	10	93776187	93776187	+	Nonsense_Mutation	SNP	A	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BTBD11	121551	broad.mit.edu	37	12	108010922	108010922	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BTK	695	broad.mit.edu	37	X	100626677	100626677	+	Nonsense_Mutation	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BTN2A1	11120	broad.mit.edu	37	6	26468137	26468137	+	Intron	SNP	C	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C10orf140	387640	broad.mit.edu	37	10	21805106	21805106	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C10orf27	219793	broad.mit.edu	37	10	72539382	72539382	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C12orf41	54934	broad.mit.edu	37	12	49073534	49073534	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C12orf42	374470	broad.mit.edu	37	12	103696403	103696403	+	Intron	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C12orf51	283450	broad.mit.edu	37	12	112681285	112681285	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C13orf23	80209	broad.mit.edu	37	13	39596315	39596315	+	Intron	SNP	C	G	G			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C14orf179	112752	broad.mit.edu	37	14	76548500	76548500	+	Intron	SNP	G	C	C			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C17orf53	78995	broad.mit.edu	37	17	42232034	42232034	+	Splice_Site	SNP	T	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C17orf74	201243	broad.mit.edu	37	17	7330846	7330846	+	3'UTR	SNP	G	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C18orf1	753	broad.mit.edu	37	18	13612659	13612659	+	Intron	SNP	G	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C18orf1	753	broad.mit.edu	37	18	13645402	13645402	+	Missense_Mutation	SNP	A	C	C			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C18orf21	83608	broad.mit.edu	37	18	33552791	33552791	+	Intron	DEL	G	-	-			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf173	127254	broad.mit.edu	37	1	75037360	75037360	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf212	113444	broad.mit.edu	37	1	35320621	35320621	+	3'UTR	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf69	200205	broad.mit.edu	37	1	228362629	228362629	+	Missense_Mutation	SNP	G	C	C			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf85	112770	broad.mit.edu	37	1	156264478	156264478	+	Intron	SNP	A	C	C			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C20orf117	140710	broad.mit.edu	37	20	35444016	35444016	+	Missense_Mutation	SNP	T	G	G			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C20orf152	140894	broad.mit.edu	37	20	34564066	34564066	+	Intron	SNP	C	G	G			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C2orf39	92749	broad.mit.edu	37	2	26637394	26637394	+	Intron	SNP	A	G	G			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C2orf78	388960	broad.mit.edu	37	2	74041468	74041468	+	Intron	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C3orf15	89876	broad.mit.edu	37	3	119462963	119462963	+	Missense_Mutation	SNP	C	T	T	rs139653997		TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C3orf24	115795	broad.mit.edu	37	3	10145908	10145908	+	3'UTR	SNP	G	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C4orf21	55345	broad.mit.edu	37	4	113468320	113468320	+	Intron	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C4orf33	132321	broad.mit.edu	37	4	130024030	130024030	+	Intron	DEL	G	-	-			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C4orf43	55319	broad.mit.edu	37	4	164435356	164435356	+	Intron	SNP	G	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C4orf45	152940	broad.mit.edu	37	4	159928756	159928756	+	Intron	SNP	C	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C4orf7	260436	broad.mit.edu	37	4	71099959	71099959	+	Intron	SNP	T	C	C			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C6orf118	168090	broad.mit.edu	37	6	165715541	165715541	+	Silent	SNP	G	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C6orf70	55780	broad.mit.edu	37	6	170155236	170155236	+	Intron	SNP	G	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C7orf10	79783	broad.mit.edu	37	7	40193523	40193523	+	Intron	SNP	C	G	G			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C7orf34	135927	broad.mit.edu	37	7	142637544	142637544	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C7orf63	79846	broad.mit.edu	37	7	89900854	89900854	+	Missense_Mutation	SNP	A	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C9orf125	84302	broad.mit.edu	37	9	104238293	104238293	+	Frame_Shift_Del	DEL	C	-	-			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C9orf150	286343	broad.mit.edu	37	9	12821241	12821242	+	Intron	INS	-	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C9orf93	203238	broad.mit.edu	37	9	15971692	15971692	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1C	775	broad.mit.edu	37	12	2613739	2613739	+	Intron	SNP	G	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1E	777	broad.mit.edu	37	1	181727186	181727186	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1S	779	broad.mit.edu	37	1	201042863	201042863	+	Intron	SNP	G	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1S	779	broad.mit.edu	37	1	201061212	201061212	+	Missense_Mutation	SNP	G	C	C			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA2D1	781	broad.mit.edu	37	7	81964610	81964610	+	Intron	SNP	T	C	C			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA2D1	781	broad.mit.edu	37	7	81978766	81978766	+	Intron	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA2D3	55799	broad.mit.edu	37	3	54786654	54786654	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA2D4	93589	broad.mit.edu	37	12	1994281	1994281	+	Intron	SNP	G	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA2D4	93589	broad.mit.edu	37	12	2016649	2016649	+	Nonsense_Mutation	SNP	C	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNG6	59285	broad.mit.edu	37	19	54515480	54515480	+	3'UTR	SNP	C	G	G			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CADPS	8618	broad.mit.edu	37	3	62502333	62502333	+	Intron	SNP	A	G	G			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CAD	790	broad.mit.edu	37	2	27456644	27456644	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CAPN10	11132	broad.mit.edu	37	2	241530258	241530258	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CASQ2	845	broad.mit.edu	37	1	116287460	116287460	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CASR	846	broad.mit.edu	37	3	121973135	121973135	+	Silent	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCBE1	147372	broad.mit.edu	37	18	57103004	57103004	+	3'UTR	SNP	A	C	C			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC14	64770	broad.mit.edu	37	3	123634422	123634422	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC160	347475	broad.mit.edu	37	X	133378823	133378823	+	Translation_Start_Site	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC19	25790	broad.mit.edu	37	1	159860505	159860505	+	Intron	SNP	T	C	C			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC73	493860	broad.mit.edu	37	11	32724364	32724364	+	Intron	SNP	G	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC80	151887	broad.mit.edu	37	3	112358661	112358661	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC93	54520	broad.mit.edu	37	2	118698795	118698795	+	Missense_Mutation	SNP	G	C	C			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC99	54908	broad.mit.edu	37	5	169015591	169015591	+	Intron	SNP	G	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCNB3	85417	broad.mit.edu	37	X	50053545	50053545	+	Silent	SNP	G	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD177	57126	broad.mit.edu	37	19	43865557	43865557	+	Intron	SNP	G	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD19	930	broad.mit.edu	37	16	28948466	28948466	+	Intron	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD1B	910	broad.mit.edu	37	1	158299405	158299405	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD22	933	broad.mit.edu	37	19	35832490	35832499	+	Frame_Shift_Del	DEL	CTGGACACTT	-	-	rs141451390		TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD28	940	broad.mit.edu	37	2	204599581	204599581	+	Silent	SNP	C	G	G			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD48	962	broad.mit.edu	37	1	160654604	160654604	+	Intron	SNP	T	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD72	971	broad.mit.edu	37	9	35618283	35618283	+	Silent	SNP	G	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD86	942	broad.mit.edu	37	3	121828008	121828008	+	Intron	SNP	G	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDC14B	8555	broad.mit.edu	37	9	99296851	99296851	+	Intron	SNP	G	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH20	28316	broad.mit.edu	37	18	59170467	59170467	+	Intron	SNP	A	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH20	28316	broad.mit.edu	37	18	59195340	59195340	+	Silent	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH8	1006	broad.mit.edu	37	16	61890960	61890960	+	Intron	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH9	1007	broad.mit.edu	37	5	26881466	26881466	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDHR2	54825	broad.mit.edu	37	5	176017225	176017225	+	Intron	SNP	C	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDHR3	222256	broad.mit.edu	37	7	105672970	105672970	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDK20	23552	broad.mit.edu	37	9	90588866	90588866	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDKAL1	54901	broad.mit.edu	37	6	20722602	20722602	+	Intron	SNP	G	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CELA3A	10136	broad.mit.edu	37	1	22332066	22332066	+	Intron	SNP	G	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CENPE	1062	broad.mit.edu	37	4	104066135	104066135	+	Intron	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CENPE	1062	broad.mit.edu	37	4	104104108	104104108	+	Intron	SNP	T	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CENPI	2491	broad.mit.edu	37	X	100365074	100365074	+	Intron	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CEP192	55125	broad.mit.edu	37	18	13030600	13030600	+	Missense_Mutation	SNP	A	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CES3	23491	broad.mit.edu	37	16	66998348	66998348	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CETN2	1069	broad.mit.edu	37	X	151996243	151996243	+	3'UTR	SNP	A	G	G			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHAT	1103	broad.mit.edu	37	10	50856530	50856530	+	Intron	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHCHD6	84303	broad.mit.edu	37	3	126485925	126485925	+	Intron	SNP	G	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHD4	1108	broad.mit.edu	37	12	6702648	6702648	+	Missense_Mutation	SNP	G	C	C			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHD5	26038	broad.mit.edu	37	1	6185286	6185287	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHD5	26038	broad.mit.edu	37	1	6214773	6214773	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHP2	63928	broad.mit.edu	37	16	23766948	23766948	+	Intron	SNP	G	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHRNA9	55584	broad.mit.edu	37	4	40355911	40355911	+	Intron	SNP	A	C	C			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHRNB2	1141	broad.mit.edu	37	1	154542142	154542142	+	Intron	SNP	T	G	G			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHST2	9435	broad.mit.edu	37	3	142840944	142840944	+	Missense_Mutation	SNP	T	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLCN1	1180	broad.mit.edu	37	7	143017055	143017055	+	Intron	SNP	G	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLCN3	1182	broad.mit.edu	37	4	170557250	170557250	+	Intron	SNP	C	G	G			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLDN2	9075	broad.mit.edu	37	X	106171518	106171518	+	Silent	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLIP2	7461	broad.mit.edu	37	7	73800978	73800978	+	Intron	SNP	G	C	C			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLSTN2	64084	broad.mit.edu	37	3	140251280	140251280	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLSTN2	64084	broad.mit.edu	37	3	140277558	140277558	+	Silent	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLU	1191	broad.mit.edu	37	8	27466505	27466505	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLVS1	157807	broad.mit.edu	37	8	62289043	62289043	+	Intron	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNBD1	168975	broad.mit.edu	37	8	88218342	88218342	+	Missense_Mutation	SNP	G	C	C	rs114439288	by1000genomes	TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNGB3	54714	broad.mit.edu	37	8	87755645	87755645	+	Intron	SNP	T	C	C			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTN1	1272	broad.mit.edu	37	12	41337488	41337488	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTN1	1272	broad.mit.edu	37	12	41410654	41410654	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTNAP2	26047	broad.mit.edu	37	7	147336050	147336050	+	Intron	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTNAP4	85445	broad.mit.edu	37	16	76513239	76513239	+	Intron	SNP	C	T	T	rs150568908	by1000genomes	TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL11A1	1301	broad.mit.edu	37	1	103449751	103449751	+	Intron	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL11A1	1301	broad.mit.edu	37	1	103479953	103479953	+	Intron	SNP	A	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL14A1	7373	broad.mit.edu	37	8	121209921	121209921	+	Intron	SNP	T	C	C			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL14A1	7373	broad.mit.edu	37	8	121216170	121216170	+	Intron	SNP	G	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL15A1	1306	broad.mit.edu	37	9	101796806	101796806	+	Intron	SNP	A	G	G			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL15A1	1306	broad.mit.edu	37	9	101797398	101797398	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL19A1	1310	broad.mit.edu	37	6	70647991	70647991	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL1A2	1278	broad.mit.edu	37	7	94054961	94054961	+	Nonsense_Mutation	SNP	C	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL1A2	1278	broad.mit.edu	37	7	94057222	94057222	+	Intron	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL22A1	169044	broad.mit.edu	37	8	139648980	139648980	+	Intron	SNP	T	G	G			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL24A1	255631	broad.mit.edu	37	1	86210400	86210400	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL4A5	1287	broad.mit.edu	37	X	107807133	107807133	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL4A5	1287	broad.mit.edu	37	X	107935990	107935990	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL4A6	1288	broad.mit.edu	37	X	107402768	107402768	+	Missense_Mutation	SNP	A	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL7A1	1294	broad.mit.edu	37	3	48605909	48605909	+	Intron	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL7A1	1294	broad.mit.edu	37	3	48628841	48628841	+	Intron	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CORO6	84940	broad.mit.edu	37	17	27948283	27948283	+	Missense_Mutation	SNP	C	G	G			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPE	1363	broad.mit.edu	37	4	166326330	166326330	+	Intron	SNP	A	G	G			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPSF7	79869	broad.mit.edu	37	11	61183865	61183865	+	Missense_Mutation	SNP	T	C	C			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CR1L	1379	broad.mit.edu	37	1	207871334	207871334	+	Intron	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CRISP1	167	broad.mit.edu	37	6	49806062	49806063	+	Intron	DNP	GC	TT	TT			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CRNN	49860	broad.mit.edu	37	1	152384671	152384671	+	Missense_Mutation	SNP	C	G	G			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CRTC2	200186	broad.mit.edu	37	1	153923727	153923727	+	Intron	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CRYBB2	1415	broad.mit.edu	37	22	25627657	25627657	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD2	114784	broad.mit.edu	37	1	34112407	34112407	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD2	114784	broad.mit.edu	37	1	34112410	34112410	+	Missense_Mutation	SNP	A	C	C			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD3	114788	broad.mit.edu	37	8	113293448	113293448	+	Missense_Mutation	SNP	A	C	C			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD3	114788	broad.mit.edu	37	8	113293554	113293554	+	Silent	SNP	G	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD3	114788	broad.mit.edu	37	8	113694845	113694845	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSN1S1	1446	broad.mit.edu	37	4	70800003	70800003	+	Intron	SNP	G	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSTF2T	23283	broad.mit.edu	37	10	53458690	53458690	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSTF2	1478	broad.mit.edu	37	X	100075538	100075538	+	Intron	SNP	G	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTCFL	140690	broad.mit.edu	37	20	56078430	56078430	+	Intron	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTCFL	140690	broad.mit.edu	37	20	56098871	56098871	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTDP1	9150	broad.mit.edu	37	18	77455387	77455388	+	Intron	DNP	GG	TT	TT			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTDP1	9150	broad.mit.edu	37	18	77513613	77513613	+	Intron	SNP	T	C	C			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTNNA2	1496	broad.mit.edu	37	2	79878763	79878763	+	Silent	SNP	G	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTNNA2	1496	broad.mit.edu	37	2	80816498	80816498	+	Missense_Mutation	SNP	G	C	C			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTPS	1503	broad.mit.edu	37	1	41461722	41461722	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CUL4B	8450	broad.mit.edu	37	X	119694176	119694176	+	Silent	SNP	G	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CUX1	1523	broad.mit.edu	37	7	101916724	101916724	+	Missense_Mutation	SNP	A	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CUX2	23316	broad.mit.edu	37	12	111729244	111729244	+	Silent	SNP	G	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYLC2	1539	broad.mit.edu	37	9	105768052	105768052	+	3'UTR	SNP	A	C	C			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP2C9	1559	broad.mit.edu	37	10	96698261	96698261	+	5'Flank	SNP	A	G	G			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DACT1	51339	broad.mit.edu	37	14	59112601	59112601	+	Silent	SNP	G	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DAGLA	747	broad.mit.edu	37	11	61498689	61498689	+	Intron	SNP	G	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DAOA	267012	broad.mit.edu	37	13	106119586	106119586	+	Intron	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DBF4	10926	broad.mit.edu	37	7	87536810	87536811	+	Missense_Mutation	DNP	CT	GA	GA			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DBX2	440097	broad.mit.edu	37	12	45429822	45429822	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCAF12L1	139170	broad.mit.edu	37	X	125686305	125686305	+	Missense_Mutation	SNP	G	C	C			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCAF8L2	347442	broad.mit.edu	37	X	27766660	27766660	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCC	1630	broad.mit.edu	37	18	50589497	50589497	+	Intron	SNP	G	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCLK1	9201	broad.mit.edu	37	13	36686012	36686012	+	Frame_Shift_Del	DEL	C	-	-			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DDC	1644	broad.mit.edu	37	7	50607692	50607692	+	Missense_Mutation	SNP	T	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DDX17	10521	broad.mit.edu	37	22	38884180	38884180	+	Intron	SNP	G	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DDX50	79009	broad.mit.edu	37	10	70670281	70670281	+	Intron	SNP	G	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DDX60L	91351	broad.mit.edu	37	4	169353735	169353735	+	Intron	SNP	T	G	G			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DEFB115	245929	broad.mit.edu	37	20	29845536	29845536	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DENND4C	55667	broad.mit.edu	37	9	19296314	19296314	+	Intron	SNP	A	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DENND5B	160518	broad.mit.edu	37	12	31540729	31540729	+	Intron	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DENND5B	160518	broad.mit.edu	37	12	31576610	31576610	+	Splice_Site	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DEPDC5	9681	broad.mit.edu	37	22	32188128	32188128	+	Intron	SNP	A	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DEPDC5	9681	broad.mit.edu	37	22	32233048	32233048	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DGKD	8527	broad.mit.edu	37	2	234370997	234370997	+	Silent	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DGKI	9162	broad.mit.edu	37	7	137341270	137341270	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DHCR7	1717	broad.mit.edu	37	11	71146589	71146589	+	Silent	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DHDPSL	112817	broad.mit.edu	37	10	99359590	99359590	+	Intron	SNP	G	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DHRS9	10170	broad.mit.edu	37	2	169938082	169938082	+	5'UTR	SNP	A	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DHX34	9704	broad.mit.edu	37	19	47879067	47879067	+	Intron	SNP	C	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DHX57	90957	broad.mit.edu	37	2	39083645	39083645	+	Intron	DEL	C	-	-			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DKC1	1736	broad.mit.edu	37	X	154001249	154001249	+	Intron	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DKC1	1736	broad.mit.edu	37	X	154004598	154004598	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DKK2	27123	broad.mit.edu	37	4	108124770	108124770	+	Intron	SNP	A	G	G			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DLG4	1742	broad.mit.edu	37	17	7094195	7094195	+	Intron	SNP	G	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DMBT1	1755	broad.mit.edu	37	10	124377525	124377525	+	Intron	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DMD	1756	broad.mit.edu	37	X	31462617	31462617	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DMD	1756	broad.mit.edu	37	X	32502979	32502980	+	Intron	DNP	CC	AA	AA			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH11	8701	broad.mit.edu	37	7	21788210	21788210	+	Silent	SNP	C	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH2	146754	broad.mit.edu	37	17	7638002	7638002	+	Silent	SNP	T	C	C			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH2	146754	broad.mit.edu	37	17	7701348	7701348	+	Intron	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH3	55567	broad.mit.edu	37	16	21078598	21078598	+	Intron	DEL	G	-	-			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH6	1768	broad.mit.edu	37	2	84804345	84804345	+	Intron	SNP	G	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH7	56171	broad.mit.edu	37	2	196913024	196913024	+	Silent	SNP	G	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH9	1770	broad.mit.edu	37	17	11837221	11837221	+	Silent	SNP	C	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNM1L	10059	broad.mit.edu	37	12	32871528	32871528	+	Intron	SNP	G	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DOCK2	1794	broad.mit.edu	37	5	169267762	169267762	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DOCK2	1794	broad.mit.edu	37	5	169469016	169469016	+	Splice_Site	SNP	G	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DOCK2	1794	broad.mit.edu	37	5	169474591	169474591	+	Nonsense_Mutation	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DOCK9	23348	broad.mit.edu	37	13	99554495	99554495	+	Intron	SNP	T	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DOK6	220164	broad.mit.edu	37	18	67406372	67406372	+	Intron	SNP	G	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DPP6	1804	broad.mit.edu	37	7	154172174	154172174	+	Intron	SNP	C	G	G			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DPYSL4	10570	broad.mit.edu	37	10	134006275	134006275	+	Missense_Mutation	SNP	T	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DPYS	1807	broad.mit.edu	37	8	105393434	105393434	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DRD1	1812	broad.mit.edu	37	5	174869090	174869090	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DRD3	1814	broad.mit.edu	37	3	113890579	113890579	+	Silent	SNP	T	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DSG2	1829	broad.mit.edu	37	18	29099836	29099836	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DUSP9	1852	broad.mit.edu	37	X	152914962	152914962	+	Silent	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DYSF	8291	broad.mit.edu	37	2	71892480	71892480	+	Intron	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DYTN	391475	broad.mit.edu	37	2	207527692	207527692	+	Missense_Mutation	SNP	T	C	C			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EARS2	124454	broad.mit.edu	37	16	23540900	23540900	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EBP	10682	broad.mit.edu	37	X	48386709	48386709	+	Nonsense_Mutation	SNP	G	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ECM1	1893	broad.mit.edu	37	1	150483881	150483882	+	Intron	DNP	GG	TT	TT			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EDAR	10913	broad.mit.edu	37	2	109545663	109545663	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EFTUD1	79631	broad.mit.edu	37	15	82520722	82520722	+	Intron	SNP	G	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EGFR	1956	broad.mit.edu	37	7	55240877	55240877	+	Intron	SNP	G	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EIF3H	8667	broad.mit.edu	37	8	117658943	117658943	+	Intron	SNP	A	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EIF4E3	317649	broad.mit.edu	37	3	71748851	71748851	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ENOX2	10495	broad.mit.edu	37	X	129813734	129813734	+	Intron	DEL	G	-	-			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ENPP1	5167	broad.mit.edu	37	6	132148858	132148858	+	Intron	SNP	C	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ENPP2	5168	broad.mit.edu	37	8	120602768	120602768	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPHA3	2042	broad.mit.edu	37	3	89478173	89478173	+	Intron	SNP	G	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPHA5	2044	broad.mit.edu	37	4	66535311	66535311	+	Silent	SNP	G	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPHA6	285220	broad.mit.edu	37	3	97202955	97202955	+	Intron	SNP	A	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPHA6	285220	broad.mit.edu	37	3	97329564	97329564	+	Intron	SNP	T	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPHB3	2049	broad.mit.edu	37	3	184290644	184290644	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ERAS	3266	broad.mit.edu	37	X	48687822	48687822	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ERBB2IP	55914	broad.mit.edu	37	5	65346652	65346652	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ERBB3	2065	broad.mit.edu	37	12	56495883	56495883	+	3'UTR	SNP	G	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ERC2	26059	broad.mit.edu	37	3	56044363	56044363	+	Intron	SNP	C	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ESX1	80712	broad.mit.edu	37	X	103495020	103495020	+	Silent	SNP	C	G	G			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EVC	2121	broad.mit.edu	37	4	5746827	5746827	+	Intron	SNP	A	G	G			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EXOC3L2	90332	broad.mit.edu	37	19	45731047	45731047	+	Intron	SNP	G	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
F10	2159	broad.mit.edu	37	13	113803179	113803179	+	Intron	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
F11R	50848	broad.mit.edu	37	1	160970596	160970596	+	Intron	SNP	C	G	G			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
F8	2157	broad.mit.edu	37	X	154065972	154065972	+	Missense_Mutation	SNP	G	C	C	rs137852472		TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
F8	2157	broad.mit.edu	37	X	154090221	154090221	+	Intron	SNP	T	C	C			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
F8	2157	broad.mit.edu	37	X	154225253	154225253	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM129C	199786	broad.mit.edu	37	19	17644372	17644372	+	Intron	SNP	T	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM169A	26049	broad.mit.edu	37	5	74130289	74130289	+	Missense_Mutation	SNP	T	G	G			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM172A	83989	broad.mit.edu	37	5	93018747	93018747	+	Intron	SNP	G	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM189B	10712	broad.mit.edu	37	1	155220391	155220391	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM40B	57464	broad.mit.edu	37	7	129104018	129104018	+	Intron	SNP	G	C	C			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM46D	169966	broad.mit.edu	37	X	79698012	79698012	+	Intron	SNP	G	C	C			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM48B1	100130302	broad.mit.edu	37	X	24380716	24380716	+	5'Flank	SNP	G	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM5B	57795	broad.mit.edu	37	1	177198961	177198962	+	5'UTR	DNP	GG	TT	TT			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM5C	339479	broad.mit.edu	37	1	190067374	190067374	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM65C	140876	broad.mit.edu	37	20	49225333	49225333	+	Intron	SNP	G	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM71B	153745	broad.mit.edu	37	5	156589909	156589909	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM71C	196472	broad.mit.edu	37	12	100042084	100042084	+	Silent	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM71D	161142	broad.mit.edu	37	14	67666417	67666417	+	Intron	SNP	G	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM75A6	389730	broad.mit.edu	37	9	43626635	43626635	+	Missense_Mutation	SNP	G	C	C			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM82B	51115	broad.mit.edu	37	8	87516524	87516524	+	Intron	SNP	G	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM9B	171483	broad.mit.edu	37	X	9001045	9001045	+	5'UTR	SNP	G	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FANCM	57697	broad.mit.edu	37	14	45657134	45657134	+	Intron	SNP	G	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FARP1	10160	broad.mit.edu	37	13	99092992	99092992	+	Missense_Mutation	SNP	C	G	G			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAT3	120114	broad.mit.edu	37	11	92086050	92086050	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAT4	79633	broad.mit.edu	37	4	126240058	126240058	+	Missense_Mutation	SNP	C	G	G			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAT4	79633	broad.mit.edu	37	4	126242180	126242181	+	Frame_Shift_Ins	INS	-	CCATCAG	CCATCAG			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBN2	2201	broad.mit.edu	37	5	127666358	127666358	+	Nonsense_Mutation	SNP	G	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBN2	2201	broad.mit.edu	37	5	127681204	127681204	+	Missense_Mutation	SNP	C	A	A	rs139620380	byFrequency	TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBN3	84467	broad.mit.edu	37	19	8167876	8167876	+	Intron	SNP	C	G	G			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBXL7	23194	broad.mit.edu	37	5	15928457	15928457	+	Missense_Mutation	SNP	T	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBXO39	162517	broad.mit.edu	37	17	6690699	6690699	+	Silent	SNP	G	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FCGR2A	2212	broad.mit.edu	37	1	161479908	161479908	+	Intron	SNP	T	C	C			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FCN1	2219	broad.mit.edu	37	9	137805417	137805417	+	Intron	SNP	G	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FCRL1	115350	broad.mit.edu	37	1	157772484	157772484	+	Intron	SNP	C	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FGD5	152273	broad.mit.edu	37	3	14861826	14861826	+	Silent	SNP	G	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FGF13	2258	broad.mit.edu	37	X	137785277	137785277	+	Intron	SNP	G	C	C			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FGF13	2258	broad.mit.edu	37	X	137939714	137939714	+	Silent	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FGF13	2258	broad.mit.edu	37	X	137939775	137939775	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FGF23	8074	broad.mit.edu	37	12	4479725	4479725	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FIGLA	344018	broad.mit.edu	37	2	71012401	71012401	+	Intron	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FKTN	2218	broad.mit.edu	37	9	108337293	108337293	+	5'UTR	SNP	C	G	G			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLNA	2316	broad.mit.edu	37	X	153581773	153581773	+	Missense_Mutation	SNP	G	C	C			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLNA	2316	broad.mit.edu	37	X	153590330	153590332	+	Intron	DEL	GTG	-	-			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLNA	2316	broad.mit.edu	37	X	153593925	153593925	+	Intron	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLT1	2321	broad.mit.edu	37	13	28964084	28964084	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FMNL1	752	broad.mit.edu	37	17	43321390	43321390	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FREM1	158326	broad.mit.edu	37	9	14813122	14813122	+	Intron	SNP	A	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FRG1	2483	broad.mit.edu	37	4	190878613	190878613	+	Missense_Mutation	SNP	A	G	G			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FRG2B	441581	broad.mit.edu	37	10	135438789	135438789	+	Silent	SNP	C	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FRMPD4	9758	broad.mit.edu	37	X	12734134	12734134	+	Intron	SNP	C	G	G			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FRY	10129	broad.mit.edu	37	13	32745165	32745165	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FSTL5	56884	broad.mit.edu	37	4	162380415	162380415	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FTO	79068	broad.mit.edu	37	16	53967990	53967990	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GAB1	2549	broad.mit.edu	37	4	144359508	144359508	+	Missense_Mutation	SNP	A	G	G			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GAB3	139716	broad.mit.edu	37	X	153927787	153927787	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABBR1	2550	broad.mit.edu	37	6	29574341	29574342	+	Intron	INS	-	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABBR2	9568	broad.mit.edu	37	9	101147903	101147903	+	Intron	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABRA3	2556	broad.mit.edu	37	X	151514097	151514097	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABRB1	2560	broad.mit.edu	37	4	47428053	47428053	+	3'UTR	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABRP	2568	broad.mit.edu	37	5	170216248	170216248	+	Missense_Mutation	SNP	G	T	T	rs146765294	byFrequency	TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABRQ	55879	broad.mit.edu	37	X	151821209	151821209	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GALNT9	50614	broad.mit.edu	37	12	132685783	132685783	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GBA2	57704	broad.mit.edu	37	9	35741095	35741095	+	Intron	SNP	G	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GDA	9615	broad.mit.edu	37	9	74828893	74828893	+	Missense_Mutation	SNP	C	G	G			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GDF10	2662	broad.mit.edu	37	10	48428949	48428949	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GFPT2	9945	broad.mit.edu	37	5	179752007	179752007	+	Intron	SNP	G	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GGA2	23062	broad.mit.edu	37	16	23502983	23502983	+	Intron	SNP	T	C	C			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GGT8P	645367	broad.mit.edu	37	2	91968586	91968586	+	RNA	SNP	T	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GIMAP6	474344	broad.mit.edu	37	7	150324760	150324761	+	3'UTR	DNP	GG	TT	TT	rs114252711	by1000genomes	TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GIPR	2696	broad.mit.edu	37	19	46173868	46173868	+	Intron	SNP	G	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLIS1	148979	broad.mit.edu	37	1	53986457	53986457	+	Intron	SNP	G	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLRA1	2741	broad.mit.edu	37	5	151231087	151231087	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLRA2	2742	broad.mit.edu	37	X	14627195	14627195	+	Silent	SNP	G	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLRX3	10539	broad.mit.edu	37	10	131943655	131943655	+	Intron	SNP	G	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GMPS	8833	broad.mit.edu	37	3	155632279	155632279	+	Silent	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GNPAT	8443	broad.mit.edu	37	1	231401300	231401300	+	Intron	SNP	A	G	G			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GOLGA2B	55592	broad.mit.edu	37	12	100551393	100551393	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GON4L	54856	broad.mit.edu	37	1	155737191	155737191	+	Intron	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GOPC	57120	broad.mit.edu	37	6	117753608	117753608	+	Intron	SNP	T	C	C			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GOT1L1	137362	broad.mit.edu	37	8	37794932	37794932	+	Intron	SNP	G	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GP2	2813	broad.mit.edu	37	16	20329502	20329502	+	Intron	SNP	G	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPAM	57678	broad.mit.edu	37	10	113917214	113917214	+	Intron	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPC6	10082	broad.mit.edu	37	13	94482692	94482704	+	Frame_Shift_Del	DEL	ACGTGCCCCGGAA	-	-	rs143089233		TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPC6	10082	broad.mit.edu	37	13	94958471	94958471	+	Intron	SNP	A	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR101	83550	broad.mit.edu	37	X	136112902	136112902	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR112	139378	broad.mit.edu	37	X	135428831	135428831	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR119	139760	broad.mit.edu	37	X	129518863	129518863	+	Missense_Mutation	SNP	C	A	A	rs142057970		TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR126	57211	broad.mit.edu	37	6	142725021	142725021	+	Missense_Mutation	SNP	G	C	C			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR12	2835	broad.mit.edu	37	13	27333098	27333098	+	Silent	SNP	G	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR149	344758	broad.mit.edu	37	3	154055976	154055976	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR61	83873	broad.mit.edu	37	1	110087022	110087022	+	3'UTR	SNP	G	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR84	53831	broad.mit.edu	37	12	54757386	54757386	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPRC5B	51704	broad.mit.edu	37	16	19873217	19873217	+	Missense_Mutation	SNP	G	C	C			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRIK1	2897	broad.mit.edu	37	21	31023388	31023388	+	Intron	SNP	C	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRIK2	2898	broad.mit.edu	37	6	102074407	102074407	+	Missense_Mutation	SNP	T	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRIN2B	2904	broad.mit.edu	37	12	13724849	13724849	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRIN3A	116443	broad.mit.edu	37	9	104385694	104385694	+	Missense_Mutation	SNP	G	T	T	rs143827340		TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRIN3A	116443	broad.mit.edu	37	9	104433358	104433358	+	Missense_Mutation	SNP	T	C	C			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRIN3A	116443	broad.mit.edu	37	9	104449552	104449552	+	Intron	SNP	G	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRIPAP1	56850	broad.mit.edu	37	X	48847300	48847300	+	Intron	SNP	G	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRPR	2925	broad.mit.edu	37	X	16142118	16142118	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRWD1	83743	broad.mit.edu	37	19	48956135	48956135	+	Silent	SNP	C	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GTF2F1	2962	broad.mit.edu	37	19	6380419	6380419	+	Missense_Mutation	SNP	T	G	G			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GTF3C1	2975	broad.mit.edu	37	16	27523148	27523148	+	Missense_Mutation	SNP	C	G	G			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GTPBP5	26164	broad.mit.edu	37	20	60776117	60776117	+	Missense_Mutation	SNP	A	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GTSF1L	149699	broad.mit.edu	37	20	42355414	42355414	+	5'UTR	SNP	G	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GUCY1A2	2977	broad.mit.edu	37	11	106694736	106694736	+	Intron	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GUCY1A2	2977	broad.mit.edu	37	11	106849510	106849510	+	Intron	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GUCY2C	2984	broad.mit.edu	37	12	14827805	14827805	+	Intron	SNP	A	G	G			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GYPA	2993	broad.mit.edu	37	4	145032616	145032616	+	Intron	SNP	T	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
H3F3C	440093	broad.mit.edu	37	12	31944715	31944715	+	Missense_Mutation	SNP	C	A	A	rs147097287		TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HABP2	3026	broad.mit.edu	37	10	115338350	115338350	+	Intron	SNP	C	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HAO1	54363	broad.mit.edu	37	20	7915017	7915017	+	Intron	SNP	T	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HBS1L	10767	broad.mit.edu	37	6	135318512	135318512	+	Intron	SNP	T	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HCFC1	3054	broad.mit.edu	37	X	153217335	153217335	+	Silent	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HCFC1	3054	broad.mit.edu	37	X	153222985	153222985	+	Splice_Site	SNP	C	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HCFC2	29915	broad.mit.edu	37	12	104480726	104480726	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HDAC4	9759	broad.mit.edu	37	2	240097963	240097963	+	Intron	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HDX	139324	broad.mit.edu	37	X	83599332	83599332	+	Missense_Mutation	SNP	G	C	C			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HEATR7B2	133558	broad.mit.edu	37	5	41019043	41019043	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HEMGN	55363	broad.mit.edu	37	9	100692396	100692396	+	Missense_Mutation	SNP	G	C	C			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HERC4	26091	broad.mit.edu	37	10	69700696	69700696	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HEXDC	284004	broad.mit.edu	37	17	80399861	80399861	+	Intron	SNP	G	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HFM1	164045	broad.mit.edu	37	1	91818925	91818925	+	Intron	SNP	T	C	C			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HIGD2B	123346	broad.mit.edu	37	15	72974696	72974696	+	Intron	SNP	C	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HIGD2B	123346	broad.mit.edu	37	15	72974716	72974716	+	Intron	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HIRA	7290	broad.mit.edu	37	22	19318997	19318997	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HIST3H2A	92815	broad.mit.edu	37	1	228645527	228645527	+	5'UTR	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HIVEP3	59269	broad.mit.edu	37	1	42047134	42047134	+	Missense_Mutation	SNP	C	G	G			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HMCN1	83872	broad.mit.edu	37	1	185986324	185986324	+	Intron	SNP	C	G	G			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HMGB3	3149	broad.mit.edu	37	X	150156302	150156302	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HMGCS2	3158	broad.mit.edu	37	1	120293372	120293372	+	Intron	SNP	G	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HMGCS2	3158	broad.mit.edu	37	1	120301895	120301895	+	Silent	SNP	T	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HMX2	3167	broad.mit.edu	37	10	124909093	124909093	+	Silent	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HNF1A	6927	broad.mit.edu	37	12	121434314	121434314	+	Intron	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HNRNPUL1	11100	broad.mit.edu	37	19	41812558	41812558	+	3'UTR	SNP	C	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HNRNPU	3192	broad.mit.edu	37	1	245018956	245018956	+	Intron	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HOOK3	84376	broad.mit.edu	37	8	42823402	42823402	+	Intron	SNP	C	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HOXB13	10481	broad.mit.edu	37	17	46804458	46804458	+	Intron	SNP	G	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HOXB2	3212	broad.mit.edu	37	17	46622233	46622233	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HOXD10	3236	broad.mit.edu	37	2	176982209	176982209	+	Silent	SNP	G	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HS3ST1	9957	broad.mit.edu	37	4	11401268	11401268	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HS6ST3	266722	broad.mit.edu	37	13	97226626	97226626	+	Intron	SNP	T	C	C			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HSD3B2	3284	broad.mit.edu	37	1	119977629	119977629	+	Intron	SNP	G	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HSD3B2	3284	broad.mit.edu	37	1	119985605	119985605	+	Missense_Mutation	SNP	T	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HSD3B2	3284	broad.mit.edu	37	1	119985679	119985679	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HSPA12A	259217	broad.mit.edu	37	10	118460383	118460383	+	Intron	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HTR1F	3355	broad.mit.edu	37	3	88040284	88040284	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HTR3D	200909	broad.mit.edu	37	3	183754160	183754160	+	Intron	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HYAL4	23553	broad.mit.edu	37	7	123508325	123508325	+	5'UTR	SNP	A	C	C			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ICA1L	130026	broad.mit.edu	37	2	203644316	203644316	+	Silent	SNP	C	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IDH3B	3420	broad.mit.edu	37	20	2641599	2641599	+	Silent	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IDS	3423	broad.mit.edu	37	X	148579886	148579886	+	Intron	SNP	G	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IFI27L1	122509	broad.mit.edu	37	14	94568239	94568239	+	Silent	SNP	A	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IFT27	11020	broad.mit.edu	37	22	37159884	37159884	+	Intron	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IGDCC3	9543	broad.mit.edu	37	15	65625516	65625517	+	Intron	DNP	CC	AA	AA			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IGJ	3512	broad.mit.edu	37	4	71532144	71532144	+	Missense_Mutation	SNP	C	G	G			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IGSF11	152404	broad.mit.edu	37	3	118648842	118648842	+	Intron	SNP	G	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IGSF22	283284	broad.mit.edu	37	11	18740135	18740135	+	Intron	SNP	G	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IKBKG	8517	broad.mit.edu	37	X	153780355	153780355	+	Silent	SNP	C	A	A	rs149511938	byFrequency	TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL12RB2	3595	broad.mit.edu	37	1	67804386	67804386	+	Silent	SNP	G	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL15	3600	broad.mit.edu	37	4	142640615	142640615	+	5'UTR	SNP	G	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL22RA2	116379	broad.mit.edu	37	6	137479601	137479602	+	Frame_Shift_Ins	INS	-	C	C			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL3RA	3563	broad.mit.edu	37	X	1460546	1460546	+	Intron	SNP	G	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IMPG2	50939	broad.mit.edu	37	3	100963380	100963380	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
INADL	10207	broad.mit.edu	37	1	62593775	62593775	+	Intron	SNP	G	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
INA	9118	broad.mit.edu	37	10	105048089	105048089	+	Intron	SNP	T	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
INSC	387755	broad.mit.edu	37	11	15197461	15197461	+	Silent	SNP	G	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
INSC	387755	broad.mit.edu	37	11	15261953	15261953	+	Intron	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IPO5	3843	broad.mit.edu	37	13	98658478	98658478	+	Missense_Mutation	SNP	A	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IPO8	10526	broad.mit.edu	37	12	30816432	30816432	+	Missense_Mutation	SNP	G	C	C			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IQCB1	9657	broad.mit.edu	37	3	121491396	121491396	+	Intron	SNP	G	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IQCF1	132141	broad.mit.edu	37	3	51895639	51895639	+	Intron	SNP	G	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IQCF2	389123	broad.mit.edu	37	3	51897343	51897343	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IRS4	8471	broad.mit.edu	37	X	107979482	107979482	+	Silent	SNP	G	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ISOC1	51015	broad.mit.edu	37	5	128440707	128440707	+	Missense_Mutation	SNP	A	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGA11	22801	broad.mit.edu	37	15	68657091	68657091	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGAX	3687	broad.mit.edu	37	16	31373541	31373541	+	Intron	SNP	G	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGB2	3689	broad.mit.edu	37	21	46330570	46330570	+	Intron	SNP	G	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGB8	3696	broad.mit.edu	37	7	20441685	20441685	+	Silent	SNP	G	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITM2A	9452	broad.mit.edu	37	X	78616925	78616925	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITPR1	3708	broad.mit.edu	37	3	4695532	4695532	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IWS1	55677	broad.mit.edu	37	2	128252492	128252492	+	Silent	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IYD	389434	broad.mit.edu	37	6	150690185	150690185	+	Silent	SNP	C	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
JMJD7-PLA2G4B	8681	broad.mit.edu	37	15	42137530	42137530	+	Intron	SNP	A	G	G			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
JPH1	56704	broad.mit.edu	37	8	75227183	75227183	+	Missense_Mutation	SNP	T	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
JPH1	56704	broad.mit.edu	37	8	75227185	75227185	+	Silent	SNP	T	G	G			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
JPH1	56704	broad.mit.edu	37	8	75227187	75227187	+	Missense_Mutation	SNP	T	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KAL1	3730	broad.mit.edu	37	X	8503631	8503631	+	Splice_Site	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNB1	3745	broad.mit.edu	37	20	47989700	47989700	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNH1	3756	broad.mit.edu	37	1	211035281	211035281	+	Intron	SNP	G	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNH1	3756	broad.mit.edu	37	1	211192199	211192199	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNJ8	3764	broad.mit.edu	37	12	21919111	21919111	+	Missense_Mutation	SNP	C	T	T	rs149127157		TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNMA1	3778	broad.mit.edu	37	10	78646790	78646790	+	3'UTR	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNT2	343450	broad.mit.edu	37	1	196288762	196288762	+	Intron	SNP	G	C	C			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNT2	343450	broad.mit.edu	37	1	196296075	196296075	+	Intron	SNP	G	C	C			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNT2	343450	broad.mit.edu	37	1	196392181	196392181	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KDELC2	143888	broad.mit.edu	37	11	108351866	108351866	+	Intron	SNP	T	C	C			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KDM2B	84678	broad.mit.edu	37	12	122018776	122018777	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KDM4B	23030	broad.mit.edu	37	19	5070977	5070977	+	Intron	SNP	G	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KDM5C	8242	broad.mit.edu	37	X	53245063	53245063	+	Frame_Shift_Del	DEL	C	-	-			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KEAP1	9817	broad.mit.edu	37	19	10602235	10602235	+	Intron	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA0922	23240	broad.mit.edu	37	4	154548817	154548817	+	Silent	SNP	C	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1033	23325	broad.mit.edu	37	12	105514228	105514228	+	Intron	SNP	T	G	G			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1109	84162	broad.mit.edu	37	4	123140465	123140465	+	Intron	SNP	C	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1407	57577	broad.mit.edu	37	3	113724429	113724429	+	Silent	SNP	T	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1529	57653	broad.mit.edu	37	9	100057180	100057180	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1841	84542	broad.mit.edu	37	2	61331223	61331223	+	Intron	SNP	T	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA2026	158358	broad.mit.edu	37	9	5968614	5968614	+	Silent	SNP	C	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF14	9928	broad.mit.edu	37	1	200587437	200587437	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF19	124602	broad.mit.edu	37	17	72337971	72337971	+	Intron	SNP	G	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF1A	547	broad.mit.edu	37	2	241725747	241725747	+	Intron	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF21B	23046	broad.mit.edu	37	1	200945835	200945835	+	Intron	SNP	G	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF4B	285643	broad.mit.edu	37	5	154395645	154395645	+	Silent	SNP	A	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIR3DL1	3811	broad.mit.edu	37	19	55340893	55340893	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIR3DL1	3811	broad.mit.edu	37	19	55346505	55346505	+	Intron	SNP	G	C	C			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIRREL2	84063	broad.mit.edu	37	19	36357499	36357499	+	3'UTR	SNP	A	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLHL1	57626	broad.mit.edu	37	13	70456619	70456619	+	Silent	SNP	T	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLK1	3816	broad.mit.edu	37	19	51323520	51323520	+	Missense_Mutation	SNP	G	C	C			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLK2	3817	broad.mit.edu	37	19	51377941	51377941	+	Intron	SNP	G	C	C			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLK2	3817	broad.mit.edu	37	19	51380061	51380061	+	Intron	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLRF1	51348	broad.mit.edu	37	12	9997030	9997030	+	Nonsense_Mutation	SNP	G	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KL	9365	broad.mit.edu	37	13	33635064	33635064	+	Silent	SNP	G	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KNDC1	85442	broad.mit.edu	37	10	134999589	134999589	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRAS	3845	broad.mit.edu	37	12	25398284	25398284	+	Missense_Mutation	SNP	C	A	A	rs121913529		TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRT28	162605	broad.mit.edu	37	17	38955966	38955966	+	Silent	SNP	G	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRT2	3849	broad.mit.edu	37	12	53045306	53045306	+	Intron	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRT5	3852	broad.mit.edu	37	12	52908997	52908997	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRT5	3852	broad.mit.edu	37	12	52910836	52910836	+	Intron	SNP	G	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRT84	3890	broad.mit.edu	37	12	52778922	52778922	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRT86	3892	broad.mit.edu	37	12	52646152	52646152	+	Intron	SNP	C	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRTAP5-11	440051	broad.mit.edu	37	11	71293805	71293805	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KSR2	283455	broad.mit.edu	37	12	118105261	118105261	+	Intron	SNP	C	G	G			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAIR1	3903	broad.mit.edu	37	19	54868260	54868260	+	Intron	SNP	G	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAIR2	3904	broad.mit.edu	37	19	55014160	55014160	+	Missense_Mutation	SNP	T	C	C			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMA1	284217	broad.mit.edu	37	18	6986440	6986440	+	Intron	SNP	C	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMA1	284217	broad.mit.edu	37	18	7008579	7008579	+	Nonsense_Mutation	SNP	T	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMA1	284217	broad.mit.edu	37	18	7023336	7023336	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMA2	3908	broad.mit.edu	37	6	129649594	129649594	+	Intron	SNP	G	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMA2	3908	broad.mit.edu	37	6	129835715	129835715	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMA3	3909	broad.mit.edu	37	18	21508618	21508618	+	Silent	SNP	A	C	C			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMB4	22798	broad.mit.edu	37	7	107674697	107674697	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LANCL1	10314	broad.mit.edu	37	2	211336397	211336397	+	Intron	SNP	G	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAPTM4B	55353	broad.mit.edu	37	8	98837176	98837176	+	Intron	SNP	A	G	G			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LARP1B	55132	broad.mit.edu	37	4	129012285	129012285	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LDB2	9079	broad.mit.edu	37	4	16597466	16597466	+	Missense_Mutation	SNP	T	C	C			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LGALS9C	654346	broad.mit.edu	37	17	18395712	18395712	+	Intron	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LHCGR	3973	broad.mit.edu	37	2	48950749	48950749	+	Intron	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LILRB2	10288	broad.mit.edu	37	19	54778967	54778967	+	Intron	SNP	C	G	G			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LILRB2	10288	broad.mit.edu	37	19	54783311	54783311	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LIMS1	3987	broad.mit.edu	37	2	109297056	109297056	+	Intron	SNP	A	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LINGO2	158038	broad.mit.edu	37	9	27949528	27949528	+	Missense_Mutation	SNP	A	C	C			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LIPG	9388	broad.mit.edu	37	18	47108730	47108730	+	Splice_Site	SNP	A	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LMO7	4008	broad.mit.edu	37	13	76397701	76397701	+	Missense_Mutation	SNP	A	G	G	rs151245949		TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LMX1A	4009	broad.mit.edu	37	1	165179843	165179843	+	Intron	SNP	G	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC100101266	100101266	broad.mit.edu	37	19	24346087	24346087	+	RNA	SNP	G	T	T	rs116099103	by1000genomes	TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC113230	113230	broad.mit.edu	37	19	14181926	14181927	+	5'Flank	DNP	CC	AA	AA			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC255025	255025	broad.mit.edu	37	3	94655821	94655821	+	5'Flank	SNP	C	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC643486	643486	broad.mit.edu	37	X	95592453	95592453	+	RNA	SNP	T	G	G			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC646813	646813	broad.mit.edu	37	11	50378147	50378147	+	RNA	SNP	T	C	C			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC649330	649330	broad.mit.edu	37	1	12908066	12908066	+	Missense_Mutation	SNP	A	G	G			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC96610	96610	broad.mit.edu	37	22	23117237	23117237	+	Intron	SNP	C	G	G			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC96610	96610	broad.mit.edu	37	22	23264983	23264983	+	RNA	SNP	C	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRBA	987	broad.mit.edu	37	4	151411967	151411967	+	Intron	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRGUK	136332	broad.mit.edu	37	7	133812369	133812370	+	Frame_Shift_Ins	INS	-	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC15	131578	broad.mit.edu	37	3	194080235	194080236	+	Missense_Mutation	DNP	TC	AT	AT			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC49	54839	broad.mit.edu	37	15	71193205	71193205	+	Intron	SNP	G	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC4C	57689	broad.mit.edu	37	11	40136851	40136851	+	Missense_Mutation	SNP	T	C	C			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRFIP2	9209	broad.mit.edu	37	3	37114278	37114278	+	Intron	SNP	T	G	G			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRN3	54674	broad.mit.edu	37	7	110763692	110763692	+	Silent	SNP	G	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LSP1	4046	broad.mit.edu	37	11	1905043	1905043	+	Intron	SNP	T	C	C			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LTBP1	4052	broad.mit.edu	37	2	33585790	33585790	+	Nonsense_Mutation	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LUC7L	55692	broad.mit.edu	37	16	242747	242747	+	Intron	SNP	C	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LUM	4060	broad.mit.edu	37	12	91502248	91502248	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LUZP2	338645	broad.mit.edu	37	11	24927594	24927594	+	Nonsense_Mutation	SNP	G	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAEA	10296	broad.mit.edu	37	4	1316333	1316333	+	Intron	SNP	G	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAGEB10	139422	broad.mit.edu	37	X	27839829	27839829	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAGEB2	4113	broad.mit.edu	37	X	30237448	30237448	+	Frame_Shift_Del	DEL	G	-	-			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAGEB3	4114	broad.mit.edu	37	X	30254366	30254366	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAGED1	9500	broad.mit.edu	37	X	51641289	51641289	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAGED1	9500	broad.mit.edu	37	X	51641678	51641678	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAGT1	84061	broad.mit.edu	37	X	77086275	77086275	+	Intron	SNP	T	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAP2	4133	broad.mit.edu	37	2	210558179	210558179	+	Missense_Mutation	SNP	A	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAP3K10	4294	broad.mit.edu	37	19	40710446	40710446	+	Silent	SNP	C	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAP4	4134	broad.mit.edu	37	3	47908590	47908590	+	Intron	SNP	G	C	C			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAP6D1	79929	broad.mit.edu	37	3	183535700	183535700	+	Intron	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAPK4	5596	broad.mit.edu	37	18	48256146	48256147	+	Missense_Mutation	DNP	CG	TC	TC			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAPKAP1	79109	broad.mit.edu	37	9	128434679	128434679	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAST1	22983	broad.mit.edu	37	19	12963015	12963015	+	Silent	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAST4	375449	broad.mit.edu	37	5	66255082	66255082	+	Intron	SNP	G	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MCF2L2	23101	broad.mit.edu	37	3	182947468	182947468	+	Nonsense_Mutation	SNP	G	T	T	rs149684646	by1000genomes	TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MCPH1	79648	broad.mit.edu	37	8	6296380	6296380	+	Intron	SNP	A	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MDGA2	161357	broad.mit.edu	37	14	47504082	47504082	+	Intron	SNP	C	G	G			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MDN1	23195	broad.mit.edu	37	6	90468063	90468063	+	Silent	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ME3	10873	broad.mit.edu	37	11	86160921	86160921	+	Intron	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MED12	9968	broad.mit.edu	37	X	70345279	70345279	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MED15	51586	broad.mit.edu	37	22	20937232	20937232	+	Silent	SNP	A	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MED16	10025	broad.mit.edu	37	19	881589	881589	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MICAL3	57553	broad.mit.edu	37	22	18301459	18301459	+	Missense_Mutation	SNP	A	C	C			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MID1	4281	broad.mit.edu	37	X	10437651	10437651	+	Intron	SNP	T	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MIER2	54531	broad.mit.edu	37	19	336131	336131	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MIR500	574502	broad.mit.edu	37	X	49773096	49773096	+	RNA	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MIR509-2	100126301	broad.mit.edu	37	X	146341417	146341417	+	5'Flank	SNP	C	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MLLT3	4300	broad.mit.edu	37	9	20414343	20414343	+	Silent	SNP	A	G	G			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MMP2	4313	broad.mit.edu	37	16	55519237	55519237	+	Missense_Mutation	SNP	G	C	C			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MNAT1	4331	broad.mit.edu	37	14	61246835	61246835	+	Intron	SNP	A	C	C			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MORC1	27136	broad.mit.edu	37	3	108698419	108698419	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MORF4L2	9643	broad.mit.edu	37	X	102931676	102931676	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MOSC1	64757	broad.mit.edu	37	1	220978313	220978313	+	Intron	SNP	G	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MPHOSPH10	10199	broad.mit.edu	37	2	71376643	71376643	+	Intron	SNP	G	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MRPL44	65080	broad.mit.edu	37	2	224828609	224828609	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MS4A1	931	broad.mit.edu	37	11	60230298	60230298	+	Intron	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MS4A4A	51338	broad.mit.edu	37	11	60059882	60059882	+	Intron	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MS4A6A	64231	broad.mit.edu	37	11	59947445	59947445	+	Intron	SNP	G	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MS4A8B	83661	broad.mit.edu	37	11	60482612	60482612	+	Intron	SNP	G	C	C			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTAP	4507	broad.mit.edu	37	9	21811756	21811756	+	Intron	SNP	G	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTCH2	23788	broad.mit.edu	37	11	47653150	47653150	+	Intron	SNP	G	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTMR1	8776	broad.mit.edu	37	X	149905222	149905222	+	Silent	SNP	G	C	C			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTMR8	55613	broad.mit.edu	37	X	63490885	63490885	+	Missense_Mutation	SNP	A	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTMR9	66036	broad.mit.edu	37	8	11174138	11174138	+	Intron	SNP	G	C	C			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTPAP	55149	broad.mit.edu	37	10	30630353	30630353	+	Intron	SNP	T	C	C			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC17	140453	broad.mit.edu	37	7	100685329	100685329	+	Silent	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC2	4583	broad.mit.edu	37	11	1104231	1104231	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC5B	727897	broad.mit.edu	37	11	1269245	1269245	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC7	4589	broad.mit.edu	37	4	71347137	71347137	+	Frame_Shift_Del	DEL	C	-	-	rs144213977		TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MXRA5	25878	broad.mit.edu	37	X	3228241	3228241	+	Missense_Mutation	SNP	C	G	G			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MXRA5	25878	broad.mit.edu	37	X	3261777	3261777	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYF6	4618	broad.mit.edu	37	12	81102680	81102680	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH11	4629	broad.mit.edu	37	16	15813418	15813418	+	Intron	SNP	T	G	G			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH11	4629	broad.mit.edu	37	16	15818582	15818582	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH13	8735	broad.mit.edu	37	17	10206386	10206386	+	Intron	SNP	T	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH14	79784	broad.mit.edu	37	19	50721154	50721154	+	Intron	SNP	G	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH1	4619	broad.mit.edu	37	17	10397671	10397671	+	Silent	SNP	C	T	T	rs145273788	byFrequency	TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH1	4619	broad.mit.edu	37	17	10402323	10402323	+	Frame_Shift_Del	DEL	C	-	-			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH2	4620	broad.mit.edu	37	17	10424853	10424853	+	Intron	SNP	A	G	G			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH2	4620	broad.mit.edu	37	17	10426621	10426621	+	Intron	SNP	G	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH7	4625	broad.mit.edu	37	14	23888295	23888295	+	Intron	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH9	4627	broad.mit.edu	37	22	36708078	36708078	+	Intron	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYL7	58498	broad.mit.edu	37	7	44179470	44179470	+	Intron	SNP	G	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO16	23026	broad.mit.edu	37	13	109518439	109518439	+	Intron	SNP	A	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO16	23026	broad.mit.edu	37	13	109699389	109699389	+	Intron	SNP	C	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO18A	399687	broad.mit.edu	37	17	27438410	27438410	+	Intron	SNP	C	G	G			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO1A	4640	broad.mit.edu	37	12	57435356	57435356	+	Intron	SNP	G	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO5A	4644	broad.mit.edu	37	15	52613419	52613419	+	Intron	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO5B	4645	broad.mit.edu	37	18	47455928	47455928	+	Missense_Mutation	SNP	C	G	G			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO7B	4648	broad.mit.edu	37	2	128322932	128322933	+	Missense_Mutation	DNP	TG	CT	CT			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO9A	4649	broad.mit.edu	37	15	72190736	72190736	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYOCD	93649	broad.mit.edu	37	17	12656400	12656400	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYOF	26509	broad.mit.edu	37	10	95126072	95126072	+	Intron	SNP	G	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYOF	26509	broad.mit.edu	37	10	95169426	95169426	+	Frame_Shift_Del	DEL	C	-	-			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYOM2	9172	broad.mit.edu	37	8	2027544	2027544	+	Intron	SNP	A	G	G			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NAA25	80018	broad.mit.edu	37	12	112516017	112516017	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NAP1L3	4675	broad.mit.edu	37	X	92927894	92927894	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NAV3	89795	broad.mit.edu	37	12	78579461	78579461	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NAV3	89795	broad.mit.edu	37	12	78592349	78592349	+	Intron	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBPF10	100132406	broad.mit.edu	37	1	145311315	145311315	+	Intron	SNP	A	C	C			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBPF10	100132406	broad.mit.edu	37	1	145747270	145747270	+	Intron	SNP	G	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBR1	4077	broad.mit.edu	37	17	41346273	41346273	+	Intron	SNP	G	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCAM2	4685	broad.mit.edu	37	21	22838976	22838976	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NDST3	9348	broad.mit.edu	37	4	119115454	119115454	+	Intron	SNP	T	C	C			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NDUFC1	4717	broad.mit.edu	37	4	140213593	140213593	+	Intron	SNP	C	G	G			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NEBL	10529	broad.mit.edu	37	10	21158739	21158739	+	Missense_Mutation	SNP	T	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NEIL3	55247	broad.mit.edu	37	4	178274885	178274885	+	Intron	SNP	A	C	C			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NELL1	4745	broad.mit.edu	37	11	20950015	20950015	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NELL1	4745	broad.mit.edu	37	11	21555993	21555993	+	Frame_Shift_Del	DEL	C	-	-			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NETO1	81832	broad.mit.edu	37	18	70417782	70417782	+	Missense_Mutation	SNP	G	C	C			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NFATC2	4773	broad.mit.edu	37	20	50139662	50139662	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NFKB2	4791	broad.mit.edu	37	10	104157797	104157797	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NHEDC1	150159	broad.mit.edu	37	4	103911057	103911057	+	Missense_Mutation	SNP	T	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NID2	22795	broad.mit.edu	37	14	52509170	52509170	+	Intron	SNP	T	C	C			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NINL	22981	broad.mit.edu	37	20	25485607	25485607	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NKAIN3	286183	broad.mit.edu	37	8	63768798	63768798	+	Intron	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLGN1	22871	broad.mit.edu	37	3	173322536	173322536	+	Missense_Mutation	SNP	G	T	T	rs79808130		TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLGN3	54413	broad.mit.edu	37	X	70389915	70389915	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLGN4X	57502	broad.mit.edu	37	X	5811257	5811257	+	Silent	SNP	C	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLRC5	84166	broad.mit.edu	37	16	57111715	57111715	+	Splice_Site	SNP	G	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLRP13	126204	broad.mit.edu	37	19	56410252	56410252	+	Silent	SNP	G	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLRP13	126204	broad.mit.edu	37	19	56424608	56424608	+	Nonsense_Mutation	SNP	C	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLRP13	126204	broad.mit.edu	37	19	56424611	56424611	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLRP5	126206	broad.mit.edu	37	19	56539728	56539728	+	Missense_Mutation	SNP	T	G	G			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLRP5	126206	broad.mit.edu	37	19	56544988	56544988	+	Missense_Mutation	SNP	A	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLRP7	199713	broad.mit.edu	37	19	55452723	55452723	+	Intron	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLRP8	126205	broad.mit.edu	37	19	56459432	56459432	+	Missense_Mutation	SNP	G	A	A	rs145268550		TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NMUR2	56923	broad.mit.edu	37	5	151783845	151783845	+	Intron	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NOLC1	9221	broad.mit.edu	37	10	103919024	103919024	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NOS1	4842	broad.mit.edu	37	12	117681107	117681107	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NOX1	27035	broad.mit.edu	37	X	100110949	100110950	+	Intron	INS	-	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NPAS3	64067	broad.mit.edu	37	14	34204396	34204396	+	Intron	SNP	T	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NPIP	9284	broad.mit.edu	37	16	15029321	15029322	+	5'Flank	DNP	GG	TT	TT			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NPLOC4	55666	broad.mit.edu	37	17	79564458	79564458	+	Intron	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRP2	8828	broad.mit.edu	37	2	206617504	206617504	+	Intron	SNP	G	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRXN2	9379	broad.mit.edu	37	11	64390268	64390268	+	Missense_Mutation	SNP	G	T	T	rs144512935		TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRXN3	9369	broad.mit.edu	37	14	79180975	79180975	+	Intron	SNP	A	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRXN3	9369	broad.mit.edu	37	14	79181120	79181120	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NSMAF	8439	broad.mit.edu	37	8	59502547	59502547	+	Intron	SNP	A	G	G			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NSUN2	54888	broad.mit.edu	37	5	6609900	6609900	+	Intron	SNP	G	C	C			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NTRK2	4915	broad.mit.edu	37	9	87342645	87342645	+	Frame_Shift_Del	DEL	C	-	-			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NUDT12	83594	broad.mit.edu	37	5	102895744	102895744	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NXF4	55999	broad.mit.edu	37	X	101802507	101802507	+	5'Flank	SNP	G	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NXF4	55999	broad.mit.edu	37	X	101822135	101822135	+	RNA	SNP	C	G	G			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NXNL2	158046	broad.mit.edu	37	9	91150599	91150599	+	Missense_Mutation	SNP	C	A	A	rs146062765		TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OCRL	4952	broad.mit.edu	37	X	128699806	128699806	+	Silent	SNP	G	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ODF2	4957	broad.mit.edu	37	9	131262412	131262412	+	Missense_Mutation	SNP	A	C	C			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OGDHL	55753	broad.mit.edu	37	10	50958893	50958893	+	Missense_Mutation	SNP	C	G	G			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OLAH	55301	broad.mit.edu	37	10	15103797	15103797	+	Missense_Mutation	SNP	G	C	C			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OLFML2B	25903	broad.mit.edu	37	1	161953809	161953809	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OPN4	94233	broad.mit.edu	37	10	88417664	88417664	+	Intron	SNP	C	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2AK2	391191	broad.mit.edu	37	1	248128993	248128993	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2AK2	391191	broad.mit.edu	37	1	248129570	248129570	+	Missense_Mutation	SNP	A	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2B11	127623	broad.mit.edu	37	1	247614730	247614730	+	Silent	SNP	C	A	A	rs140643495		TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2B3	442184	broad.mit.edu	37	6	29054921	29054921	+	Silent	SNP	G	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2L13	284521	broad.mit.edu	37	1	248247843	248247843	+	Intron	SNP	G	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2L2	26246	broad.mit.edu	37	1	248202292	248202292	+	Missense_Mutation	SNP	C	G	G			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2M1P	388762	broad.mit.edu	37	1	248286052	248286053	+	Frame_Shift_Del	DEL	GG	-	-			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2W1	26692	broad.mit.edu	37	6	29012657	29012657	+	Missense_Mutation	SNP	A	G	G			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2W3	343171	broad.mit.edu	37	1	248059435	248059435	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4C46	119749	broad.mit.edu	37	11	51515237	51515237	+	5'Flank	SNP	T	G	G			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4C46	119749	broad.mit.edu	37	11	51515433	51515433	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4N4	283694	broad.mit.edu	37	15	22332708	22332708	+	5'UTR	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4N5	390437	broad.mit.edu	37	14	20612049	20612049	+	Missense_Mutation	SNP	A	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR51F2	119694	broad.mit.edu	37	11	4843368	4843368	+	Silent	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR51Q1	390061	broad.mit.edu	37	11	5444219	5444219	+	Silent	SNP	T	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR52A4	390053	broad.mit.edu	37	11	5142424	5142424	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR52A5	390054	broad.mit.edu	37	11	5153746	5153746	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR52K2	119774	broad.mit.edu	37	11	4471398	4471398	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR56A1	120796	broad.mit.edu	37	11	6048764	6048764	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR5B12	390191	broad.mit.edu	37	11	58206722	58206722	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR5P2	120065	broad.mit.edu	37	11	7818288	7818288	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR5T2	219464	broad.mit.edu	37	11	55999938	55999938	+	Frame_Shift_Del	DEL	C	-	-			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR6N1	128372	broad.mit.edu	37	1	158736290	158736290	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OSBPL3	26031	broad.mit.edu	37	7	24903001	24903001	+	Intron	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OSBPL7	114881	broad.mit.edu	37	17	45890824	45890824	+	Intron	SNP	A	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OSM	5008	broad.mit.edu	37	22	30660280	30660281	+	Frame_Shift_Ins	INS	-	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OTC	5009	broad.mit.edu	37	X	38271170	38271170	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OTOF	9381	broad.mit.edu	37	2	26702462	26702462	+	Missense_Mutation	SNP	C	G	G			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OTOL1	131149	broad.mit.edu	37	3	161215026	161215026	+	Intron	SNP	G	T	T	rs140387418	by1000genomes	TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
P704P	641455	broad.mit.edu	37	14	20020002	20020002	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PABPC3	5042	broad.mit.edu	37	13	25671243	25671243	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PADI2	11240	broad.mit.edu	37	1	17398019	17398019	+	Intron	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAK3	5063	broad.mit.edu	37	X	110459869	110459869	+	Intron	SNP	G	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAK7	57144	broad.mit.edu	37	20	9525048	9525048	+	Nonsense_Mutation	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAK7	57144	broad.mit.edu	37	20	9560737	9560737	+	Intron	SNP	A	G	G			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PALB2	79728	broad.mit.edu	37	16	23637683	23637683	+	Frame_Shift_Del	DEL	G	-	-			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PALLD	23022	broad.mit.edu	37	4	169632955	169632955	+	Silent	SNP	C	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAPPA2	60676	broad.mit.edu	37	1	176525976	176525976	+	Frame_Shift_Del	DEL	C	-	-			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PARK2	5071	broad.mit.edu	37	6	161771171	161771171	+	Missense_Mutation	SNP	C	A	A	rs137853056		TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PARP14	54625	broad.mit.edu	37	3	122446791	122446791	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PASD1	139135	broad.mit.edu	37	X	150817161	150817161	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PASK	23178	broad.mit.edu	37	2	242066563	242066563	+	Silent	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAX5	5079	broad.mit.edu	37	9	37014885	37014885	+	Intron	SNP	G	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAX6	5080	broad.mit.edu	37	11	31822198	31822198	+	Intron	SNP	G	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCCA	5095	broad.mit.edu	37	13	101121723	101121723	+	Intron	SNP	T	C	C			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH11X	27328	broad.mit.edu	37	X	91369310	91369310	+	Intron	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH17	27253	broad.mit.edu	37	13	58207805	58207805	+	Silent	SNP	G	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH19	57526	broad.mit.edu	37	X	99657617	99657617	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH9	5101	broad.mit.edu	37	13	67800609	67800609	+	Missense_Mutation	SNP	C	G	G			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHB7	56129	broad.mit.edu	37	5	140552337	140552337	+	5'UTR	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHGA7	56108	broad.mit.edu	37	5	140762984	140762984	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHGB3	56102	broad.mit.edu	37	5	140752309	140752309	+	Missense_Mutation	SNP	A	C	C			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHGB7	56099	broad.mit.edu	37	5	140798154	140798154	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHGC5	56097	broad.mit.edu	37	5	140874355	140874355	+	Intron	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDP1	200373	broad.mit.edu	37	2	120388542	120388542	+	Intron	SNP	A	G	G			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCLO	27445	broad.mit.edu	37	7	82579765	82579765	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCLO	27445	broad.mit.edu	37	7	82582433	82582433	+	Silent	SNP	A	G	G			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCNX	22990	broad.mit.edu	37	14	71518828	71518828	+	Intron	SNP	G	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCYT1B	9468	broad.mit.edu	37	X	24593481	24593481	+	Intron	SNP	G	C	C			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE4D	5144	broad.mit.edu	37	5	59726227	59726227	+	Intron	SNP	T	G	G			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDGFRB	5159	broad.mit.edu	37	5	149515331	149515331	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDXDC1	23042	broad.mit.edu	37	16	15125479	15125479	+	Intron	SNP	C	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDZD8	118987	broad.mit.edu	37	10	119044378	119044378	+	Silent	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PEG3	5178	broad.mit.edu	37	19	57330040	57330040	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PEX5	5830	broad.mit.edu	37	12	7354787	7354787	+	Intron	SNP	A	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PFDN4	5203	broad.mit.edu	37	20	52831753	52831753	+	Intron	SNP	A	G	G	rs111475492		TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PGK1	5230	broad.mit.edu	37	X	77380234	77380234	+	Intron	SNP	G	C	C			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PGLYRP1	8993	broad.mit.edu	37	19	46526132	46526132	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PGPEP1L	145814	broad.mit.edu	37	15	99514313	99514313	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PHF14	9678	broad.mit.edu	37	7	11022896	11022896	+	Intron	SNP	G	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PHKA1	5255	broad.mit.edu	37	X	71915536	71915536	+	Intron	SNP	G	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PICALM	8301	broad.mit.edu	37	11	85737453	85737453	+	Intron	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIGS	94005	broad.mit.edu	37	17	26883184	26883184	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIGV	55650	broad.mit.edu	37	1	27117369	27117369	+	Silent	SNP	G	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIK3CB	5291	broad.mit.edu	37	3	138461382	138461382	+	Intron	SNP	A	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIK3CG	5294	broad.mit.edu	37	7	106508039	106508039	+	Silent	SNP	G	C	C			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PILRB	29990	broad.mit.edu	37	7	99956677	99956677	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PJA1	64219	broad.mit.edu	37	X	68381543	68381543	+	Silent	SNP	G	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PJA1	64219	broad.mit.edu	37	X	68381584	68381584	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PKNOX2	63876	broad.mit.edu	37	11	125255501	125255501	+	Silent	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PL-5283	647087	broad.mit.edu	37	7	135345119	135345119	+	5'Flank	SNP	G	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLAUR	5329	broad.mit.edu	37	19	44171830	44171830	+	Silent	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLB1	151056	broad.mit.edu	37	2	28718959	28718959	+	5'Flank	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLCB3	5331	broad.mit.edu	37	11	64023163	64023163	+	Intron	SNP	G	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLCB4	5332	broad.mit.edu	37	20	9459601	9459601	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLCE1	51196	broad.mit.edu	37	10	96018635	96018635	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLEKHG7	440107	broad.mit.edu	37	12	93131352	93131352	+	Intron	SNP	G	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLEKHH2	130271	broad.mit.edu	37	2	43970957	43970957	+	Intron	SNP	T	C	C			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLEK	5341	broad.mit.edu	37	2	68615506	68615506	+	Intron	SNP	G	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLS3	5358	broad.mit.edu	37	X	114856611	114856611	+	Missense_Mutation	SNP	G	C	C			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLXNB3	5365	broad.mit.edu	37	X	153039215	153039215	+	Intron	SNP	A	G	G			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLXNC1	10154	broad.mit.edu	37	12	94641610	94641610	+	Intron	SNP	T	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLXND1	23129	broad.mit.edu	37	3	129293305	129293305	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PMS2L1	5379	broad.mit.edu	37	7	99927808	99927808	+	RNA	SNP	A	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PMS2	5395	broad.mit.edu	37	7	6048746	6048746	+	5'Flank	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PNLIPRP3	119548	broad.mit.edu	37	10	118199090	118199090	+	Intron	SNP	G	C	C			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PNP	4860	broad.mit.edu	37	14	20943064	20943064	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POLA1	5422	broad.mit.edu	37	X	24806706	24806706	+	Intron	SNP	G	C	C			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POLDIP2	26073	broad.mit.edu	37	17	26684390	26684391	+	Splice_Site	INS	-	C	C	rs148075904	by1000genomes	TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PON3	5446	broad.mit.edu	37	7	94991730	94991730	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POTEC	388468	broad.mit.edu	37	18	14523296	14523296	+	Intron	SNP	G	C	C			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POTEE	445582	broad.mit.edu	37	2	131984447	131984447	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POTEH	23784	broad.mit.edu	37	22	16287715	16287715	+	Silent	SNP	G	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POU6F2	11281	broad.mit.edu	37	7	39247226	39247226	+	Intron	SNP	C	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPM1L	151742	broad.mit.edu	37	3	160783208	160783208	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPME1	51400	broad.mit.edu	37	11	73933310	73933310	+	Intron	SNP	A	G	G			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPP1R15A	23645	broad.mit.edu	37	19	49376608	49376608	+	Nonsense_Mutation	SNP	G	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPP1R3F	89801	broad.mit.edu	37	X	49142649	49142649	+	Silent	SNP	A	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRAMEF18	391003	broad.mit.edu	37	1	13695833	13695833	+	Missense_Mutation	SNP	T	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRAME	23532	broad.mit.edu	37	22	22891032	22891032	+	Silent	SNP	T	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRB4	5545	broad.mit.edu	37	12	11188920	11188920	+	Intron	SNP	C	G	G			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PREX2	80243	broad.mit.edu	37	8	69015185	69015185	+	Intron	SNP	G	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRG3	10394	broad.mit.edu	37	11	57144461	57144461	+	Intron	SNP	C	G	G			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRKAG2	51422	broad.mit.edu	37	7	151261007	151261007	+	Intron	SNP	T	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRKCH	5583	broad.mit.edu	37	14	61915900	61915900	+	Missense_Mutation	SNP	A	G	G			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRMT10	90826	broad.mit.edu	37	4	148589703	148589703	+	Missense_Mutation	SNP	T	C	C			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRMT2	3275	broad.mit.edu	37	21	48080566	48080566	+	Intron	SNP	G	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PROKR2	128674	broad.mit.edu	37	20	5283097	5283097	+	Silent	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRR21	643905	broad.mit.edu	37	2	240982289	240982289	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRSS37	136242	broad.mit.edu	37	7	141537550	141537550	+	Intron	SNP	G	C	C			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRSS55	203074	broad.mit.edu	37	8	10389062	10389062	+	Intron	SNP	G	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSG1	5669	broad.mit.edu	37	19	43348611	43348611	+	3'UTR	SNP	G	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSG6	5675	broad.mit.edu	37	19	43430241	43430241	+	Intron	SNP	T	C	C			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSG9	5678	broad.mit.edu	37	19	43763045	43763045	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSME4	23198	broad.mit.edu	37	2	54127178	54127178	+	Intron	SNP	A	G	G			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTCHD2	57540	broad.mit.edu	37	1	11574331	11574331	+	Intron	SNP	G	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTGFR	5737	broad.mit.edu	37	1	79002220	79002220	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTGS2	5743	broad.mit.edu	37	1	186643683	186643683	+	Missense_Mutation	SNP	T	G	G			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPN4	5775	broad.mit.edu	37	2	120712719	120712719	+	Intron	DEL	T	-	-			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRB	5787	broad.mit.edu	37	12	70974892	70974892	+	Silent	SNP	G	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRB	5787	broad.mit.edu	37	12	70983910	70983910	+	Silent	SNP	G	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRD	5789	broad.mit.edu	37	9	8527333	8527333	+	Intron	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRE	5791	broad.mit.edu	37	10	129839291	129839291	+	Intron	SNP	C	G	G			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRG	5793	broad.mit.edu	37	3	62257223	62257223	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRN2	5799	broad.mit.edu	37	7	158109546	158109546	+	Missense_Mutation	SNP	C	A	A	rs145815332		TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRT	11122	broad.mit.edu	37	20	40789929	40789929	+	Intron	SNP	G	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRZ1	5803	broad.mit.edu	37	7	121693795	121693795	+	Intron	SNP	A	C	C			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PUM1	9698	broad.mit.edu	37	1	31439146	31439146	+	Intron	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAB30	27314	broad.mit.edu	37	11	82698724	82698724	+	Missense_Mutation	SNP	T	C	C			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAB33A	9363	broad.mit.edu	37	X	129318489	129318489	+	Silent	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAB38	23682	broad.mit.edu	37	11	87847406	87847406	+	Intron	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RABGAP1	23637	broad.mit.edu	37	9	125796810	125796811	+	Intron	DNP	GG	TT	TT			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAD54L2	23132	broad.mit.edu	37	3	51679122	51679122	+	Nonsense_Mutation	SNP	C	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAG1	5896	broad.mit.edu	37	11	36597180	36597180	+	Silent	SNP	C	A	A	rs121918572		TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RALGPS2	55103	broad.mit.edu	37	1	178858873	178858873	+	Intron	SNP	G	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RANBP10	57610	broad.mit.edu	37	16	67763766	67763766	+	Intron	SNP	T	C	C			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAPGEF6	51735	broad.mit.edu	37	5	130799906	130799906	+	Frame_Shift_Del	DEL	C	-	-			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RARS	5917	broad.mit.edu	37	5	167933892	167933892	+	Intron	SNP	T	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RASEF	158158	broad.mit.edu	37	9	85619415	85619415	+	Silent	SNP	G	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RASGRP3	25780	broad.mit.edu	37	2	33745418	33745418	+	Intron	SNP	G	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RBMX2	51634	broad.mit.edu	37	X	129536369	129536369	+	Intron	SNP	A	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RBMXL2	27288	broad.mit.edu	37	11	7111241	7111242	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RBMX	27316	broad.mit.edu	37	X	135961336	135961336	+	Intron	SNP	C	G	G			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RCC1	1104	broad.mit.edu	37	1	28864429	28864429	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
REG3G	130120	broad.mit.edu	37	2	79253910	79253910	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RELN	5649	broad.mit.edu	37	7	103151432	103151433	+	Missense_Mutation	DNP	GG	CT	CT			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RENBP	5973	broad.mit.edu	37	X	153209095	153209095	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
REPS2	9185	broad.mit.edu	37	X	17151833	17151833	+	Intron	SNP	C	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
REXO2	25996	broad.mit.edu	37	11	114320703	114320703	+	3'UTR	SNP	G	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RFT1	91869	broad.mit.edu	37	3	53156537	53156537	+	Silent	SNP	G	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RGPD3	653489	broad.mit.edu	37	2	107049613	107049613	+	Missense_Mutation	SNP	A	C	C			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RHAG	6005	broad.mit.edu	37	6	49578635	49578635	+	Intron	SNP	A	G	G			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RHBG	57127	broad.mit.edu	37	1	156346992	156346992	+	Intron	SNP	T	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RHOBTB1	9886	broad.mit.edu	37	10	62631915	62631915	+	Intron	SNP	G	C	C			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RILPL1	353116	broad.mit.edu	37	12	123983919	123983919	+	Intron	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RIMS2	9699	broad.mit.edu	37	8	104948734	104948734	+	Intron	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RIPK1	8737	broad.mit.edu	37	6	3105766	3105766	+	Missense_Mutation	SNP	C	G	G			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RIPPLY2	134701	broad.mit.edu	37	6	84563492	84563492	+	Silent	SNP	G	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RIPPLY2	134701	broad.mit.edu	37	6	84563752	84563752	+	Intron	SNP	G	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RLIM	51132	broad.mit.edu	37	X	73811157	73811157	+	3'UTR	SNP	G	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNASE2	6036	broad.mit.edu	37	14	21388012	21388013	+	Intron	INS	-	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNF113A	7737	broad.mit.edu	37	X	119004598	119004598	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNF160	26046	broad.mit.edu	37	21	30313517	30313517	+	Intron	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNF160	26046	broad.mit.edu	37	21	30343757	30343757	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNF17	56163	broad.mit.edu	37	13	25416251	25416251	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNF212	285498	broad.mit.edu	37	4	1066813	1066813	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNF220	55182	broad.mit.edu	37	1	45098068	45098068	+	Intron	SNP	C	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNF5P1	286140	broad.mit.edu	37	8	38458370	38458370	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNMT	8731	broad.mit.edu	37	18	13731472	13731484	+	Splice_Site	DEL	TAGTGTTGGTTCA	-	-			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ROBO4	54538	broad.mit.edu	37	11	124756669	124756669	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ROR2	4920	broad.mit.edu	37	9	94484942	94484942	+	3'UTR	SNP	G	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ROS1	6098	broad.mit.edu	37	6	117622401	117622402	+	Intron	DNP	CC	AG	AG	rs118136866	by1000genomes	TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RP2	6102	broad.mit.edu	37	X	46713296	46713296	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPS6KA1	6195	broad.mit.edu	37	1	26887125	26887125	+	Intron	SNP	G	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPS6KA1	6195	broad.mit.edu	37	1	26898594	26898594	+	Intron	SNP	A	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RRM2	6241	broad.mit.edu	37	2	10269234	10269234	+	Missense_Mutation	SNP	A	G	G			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RRP1B	23076	broad.mit.edu	37	21	45106693	45106693	+	Missense_Mutation	SNP	A	G	G			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RSPH10B2	728194	broad.mit.edu	37	7	5984566	5984566	+	Intron	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RUNX1T1	862	broad.mit.edu	37	8	93026724	93026724	+	Intron	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RXFP1	59350	broad.mit.edu	37	4	159493819	159493819	+	Intron	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RXFP1	59350	broad.mit.edu	37	4	159566140	159566140	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RXRB	6257	broad.mit.edu	37	6	33163824	33163824	+	Intron	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR1	6261	broad.mit.edu	37	19	38995661	38995661	+	Silent	SNP	G	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR3	6263	broad.mit.edu	37	15	34064146	34064146	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
S100A11	6282	broad.mit.edu	37	1	152005093	152005093	+	3'UTR	SNP	C	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SAMD4A	23034	broad.mit.edu	37	14	55243227	55243227	+	Silent	SNP	C	G	G			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SAMD7	344658	broad.mit.edu	37	3	169637321	169637322	+	Missense_Mutation	DNP	AG	TT	TT			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SAPS1	22870	broad.mit.edu	37	19	55753604	55753604	+	Nonsense_Mutation	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCML4	256380	broad.mit.edu	37	6	108070755	108070755	+	Intron	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCN10A	6336	broad.mit.edu	37	3	38798142	38798142	+	Intron	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCN3B	55800	broad.mit.edu	37	11	123504806	123504806	+	Intron	SNP	C	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCN5A	6331	broad.mit.edu	37	3	38662466	38662466	+	Intron	SNP	G	C	C			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCN7A	6332	broad.mit.edu	37	2	167334168	167334168	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SDCCAG1	9147	broad.mit.edu	37	14	50053136	50053136	+	Intron	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SDHC	6391	broad.mit.edu	37	1	161310484	161310484	+	Intron	SNP	T	C	C			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SDHC	6391	broad.mit.edu	37	1	161332332	161332332	+	3'UTR	SNP	T	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SDK1	221935	broad.mit.edu	37	7	4002486	4002486	+	Intron	SNP	G	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEC24D	9871	broad.mit.edu	37	4	119686060	119686060	+	Missense_Mutation	SNP	T	C	C			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEMA3D	223117	broad.mit.edu	37	7	84702465	84702465	+	Intron	SNP	A	G	G			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEMA3D	223117	broad.mit.edu	37	7	84751060	84751060	+	Nonsense_Mutation	SNP	T	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEMA3F	6405	broad.mit.edu	37	3	50225348	50225348	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEMA6B	10501	broad.mit.edu	37	19	4551004	4551004	+	Intron	SNP	C	G	G			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEMA6D	80031	broad.mit.edu	37	15	48022593	48022593	+	Intron	SNP	G	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SENP2	59343	broad.mit.edu	37	3	185339769	185339769	+	Intron	SNP	G	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SERPINA11	256394	broad.mit.edu	37	14	94912611	94912611	+	Intron	SNP	A	C	C			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SERPINA5	5104	broad.mit.edu	37	14	95057199	95057199	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SERPINB2	5055	broad.mit.edu	37	18	61568874	61568874	+	Intron	SNP	G	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SERPINB4	6318	broad.mit.edu	37	18	61328204	61328204	+	Intron	DEL	C	-	-			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SERPINB7	8710	broad.mit.edu	37	18	61460397	61460397	+	Silent	SNP	A	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SETD3	84193	broad.mit.edu	37	14	99865538	99865538	+	Intron	SNP	G	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SETD3	84193	broad.mit.edu	37	14	99925494	99925494	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SETD4	54093	broad.mit.edu	37	21	37425823	37425823	+	Intron	SNP	G	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SETX	23064	broad.mit.edu	37	9	135152556	135152556	+	Intron	DEL	G	-	-			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SF3A1	10291	broad.mit.edu	37	22	30738254	30738254	+	Missense_Mutation	SNP	T	C	C			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SGCZ	137868	broad.mit.edu	37	8	13965682	13965682	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SGK3	23678	broad.mit.edu	37	8	67710699	67710699	+	Intron	SNP	A	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SH2D1A	4068	broad.mit.edu	37	X	123503938	123503938	+	Intron	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SHFM1	7979	broad.mit.edu	37	7	96318269	96318269	+	Silent	SNP	T	C	C			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SHOX	6473	broad.mit.edu	37	X	601506	601506	+	Intron	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SHPRH	257218	broad.mit.edu	37	6	146262953	146262953	+	Missense_Mutation	SNP	C	G	G			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SHROOM4	57477	broad.mit.edu	37	X	50377002	50377002	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SIGLEC16	400709	broad.mit.edu	37	19	50473649	50473649	+	RNA	SNP	G	C	C			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SIGLEC6	946	broad.mit.edu	37	19	52023450	52023450	+	Silent	SNP	G	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SIGLEC6	946	broad.mit.edu	37	19	52031048	52031048	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SIM2	6493	broad.mit.edu	37	21	38114105	38114105	+	Missense_Mutation	SNP	T	C	C			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SIX2	10736	broad.mit.edu	37	2	45236176	45236176	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SI	6476	broad.mit.edu	37	3	164700716	164700716	+	Intron	SNP	G	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SI	6476	broad.mit.edu	37	3	164700883	164700883	+	Intron	SNP	G	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SI	6476	broad.mit.edu	37	3	164738908	164738908	+	Intron	SNP	T	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SI	6476	broad.mit.edu	37	3	164758880	164758880	+	Frame_Shift_Del	DEL	A	-	-			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SI	6476	broad.mit.edu	37	3	164792458	164792458	+	Intron	DEL	G	-	-			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLAMF7	57823	broad.mit.edu	37	1	160709145	160709145	+	Silent	SNP	A	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLAMF7	57823	broad.mit.edu	37	1	160722829	160722829	+	Intron	SNP	G	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC10A2	6555	broad.mit.edu	37	13	103718088	103718088	+	Intron	SNP	A	G	G			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC10A3	8273	broad.mit.edu	37	X	153716929	153716929	+	Silent	SNP	G	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC12A5	57468	broad.mit.edu	37	20	44684841	44684841	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC12A6	9990	broad.mit.edu	37	15	34530465	34530465	+	Missense_Mutation	SNP	T	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC14A2	8170	broad.mit.edu	37	18	43247835	43247835	+	Silent	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC17A1	6568	broad.mit.edu	37	6	25813478	25813478	+	Intron	SNP	G	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC18A2	6571	broad.mit.edu	37	10	119012799	119012799	+	Intron	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC18A2	6571	broad.mit.edu	37	10	119017345	119017345	+	Silent	SNP	G	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC22A12	116085	broad.mit.edu	37	11	64366303	64366303	+	Silent	SNP	G	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC22A16	85413	broad.mit.edu	37	6	110764010	110764011	+	Intron	DNP	AG	TT	TT			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC24A5	283652	broad.mit.edu	37	15	48427124	48427124	+	Missense_Mutation	SNP	C	G	G			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC26A7	115111	broad.mit.edu	37	8	92401799	92401799	+	Intron	SNP	T	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC30A8	169026	broad.mit.edu	37	8	118174144	118174144	+	Intron	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC35B1	10237	broad.mit.edu	37	17	47785174	47785174	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC35D3	340146	broad.mit.edu	37	6	137245704	137245704	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC39A13	91252	broad.mit.edu	37	11	47380577	47380577	+	Intron	SNP	G	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC39A4	55630	broad.mit.edu	37	8	145638799	145638799	+	Intron	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC3A1	6519	broad.mit.edu	37	2	44508764	44508764	+	Intron	SNP	G	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC45A2	51151	broad.mit.edu	37	5	33947361	33947361	+	Silent	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC47A1	55244	broad.mit.edu	37	17	19480964	19480964	+	3'UTR	SNP	G	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC5A11	115584	broad.mit.edu	37	16	24888526	24888526	+	Intron	SNP	A	C	C			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC6A10P	386757	broad.mit.edu	37	16	32893905	32893905	+	5'Flank	SNP	G	C	C			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC6A5	9152	broad.mit.edu	37	11	20668432	20668432	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC9A5	6553	broad.mit.edu	37	16	67289214	67289214	+	Intron	SNP	C	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLCO1B3	28234	broad.mit.edu	37	12	21032388	21032388	+	Missense_Mutation	SNP	C	G	G	rs138702607		TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLCO1B3	28234	broad.mit.edu	37	12	21036660	21036660	+	Intron	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLCO1B3	28234	broad.mit.edu	37	12	21196529	21196529	+	Intron	SNP	T	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLCO1B3	28234	broad.mit.edu	37	12	21229503	21229503	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLCO6A1	133482	broad.mit.edu	37	5	101834447	101834447	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLFN5	162394	broad.mit.edu	37	17	33585721	33585721	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLITRK1	114798	broad.mit.edu	37	13	84455264	84455264	+	Silent	SNP	G	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLITRK3	22865	broad.mit.edu	37	3	164906717	164906717	+	Silent	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMAD2	4087	broad.mit.edu	37	18	45395559	45395559	+	Intron	SNP	A	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMARCA2	6595	broad.mit.edu	37	9	2097338	2097338	+	Intron	SNP	G	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMC1A	8243	broad.mit.edu	37	X	53423085	53423085	+	Intron	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMC1A	8243	broad.mit.edu	37	X	53440455	53440455	+	Intron	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMPD4	55627	broad.mit.edu	37	2	130912841	130912841	+	Intron	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMR3B	10879	broad.mit.edu	37	4	71255577	71255577	+	3'UTR	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNORD116-4	100033416	broad.mit.edu	37	15	25330675	25330675	+	Intron	SNP	G	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNRNP200	23020	broad.mit.edu	37	2	96945230	96945230	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNTG1	54212	broad.mit.edu	37	8	51664619	51664619	+	Missense_Mutation	SNP	G	C	C			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SOAT2	8435	broad.mit.edu	37	12	53514665	53514665	+	Silent	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SORCS1	114815	broad.mit.edu	37	10	108923816	108923816	+	Missense_Mutation	SNP	C	G	G			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SORCS3	22986	broad.mit.edu	37	10	106907476	106907476	+	Silent	SNP	G	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPAG17	200162	broad.mit.edu	37	1	118550797	118550797	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPANXN2	494119	broad.mit.edu	37	X	142795404	142795404	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPO11	23626	broad.mit.edu	37	20	55913980	55913980	+	Intron	SNP	T	C	C			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPOCK2	9806	broad.mit.edu	37	10	73824036	73824036	+	Intron	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPRR2F	6705	broad.mit.edu	37	1	153085168	153085168	+	Silent	SNP	T	C	C			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPTA1	6708	broad.mit.edu	37	1	158607998	158607998	+	Missense_Mutation	SNP	C	G	G			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPTA1	6708	broad.mit.edu	37	1	158622905	158622905	+	Intron	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPTA1	6708	broad.mit.edu	37	1	158644338	158644339	+	Nonsense_Mutation	DNP	GC	AA	AA			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPTBN2	6712	broad.mit.edu	37	11	66472300	66472300	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPTBN5	51332	broad.mit.edu	37	15	42168805	42168805	+	Missense_Mutation	SNP	T	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SRP72	6731	broad.mit.edu	37	4	57333788	57333788	+	5'UTR	SNP	T	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SSH1	54434	broad.mit.edu	37	12	109205139	109205139	+	Intron	SNP	G	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SSPO	23145	broad.mit.edu	37	7	149484826	149484826	+	Missense_Mutation	SNP	C	G	G			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SSX1	6756	broad.mit.edu	37	X	48126274	48126274	+	Intron	SNP	C	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SSX6	280657	broad.mit.edu	37	X	47969414	47969414	+	Silent	SNP	A	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SSX8	280659	broad.mit.edu	37	X	52659323	52659323	+	RNA	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ST6GAL2	84620	broad.mit.edu	37	2	107459835	107459835	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ST6GALNAC3	256435	broad.mit.edu	37	1	77094408	77094408	+	Missense_Mutation	SNP	T	G	G			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STAG2	10735	broad.mit.edu	37	X	123183918	123183918	+	Intron	SNP	G	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STAM	8027	broad.mit.edu	37	10	17737165	17737166	+	Missense_Mutation	DNP	TA	AT	AT			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STAT2	6773	broad.mit.edu	37	12	56743829	56743829	+	Intron	SNP	T	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STK32A	202374	broad.mit.edu	37	5	146752642	146752642	+	Intron	SNP	A	G	G			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STK39	27347	broad.mit.edu	37	2	168996894	168996894	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STXBP3	6814	broad.mit.edu	37	1	109315285	109315285	+	Splice_Site	SNP	A	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SULT1B1	27284	broad.mit.edu	37	4	70620409	70620409	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SULT4A1	25830	broad.mit.edu	37	22	44237642	44237642	+	Intron	SNP	C	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SUSD3	203328	broad.mit.edu	37	9	95840308	95840308	+	Intron	SNP	G	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SVIL	6840	broad.mit.edu	37	10	29813491	29813491	+	Silent	SNP	C	A	A	rs113842540	byFrequency	TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYCP3	50511	broad.mit.edu	37	12	102131607	102131607	+	Missense_Mutation	SNP	C	G	G			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYNE2	23224	broad.mit.edu	37	14	64586402	64586403	+	Intron	DNP	GG	TT	TT			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYNE2	23224	broad.mit.edu	37	14	64676862	64676862	+	Intron	SNP	G	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYT16	83851	broad.mit.edu	37	14	62567160	62567160	+	Frame_Shift_Del	DEL	C	-	-			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYT9	143425	broad.mit.edu	37	11	7335047	7335047	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAB3	257397	broad.mit.edu	37	X	30864563	30864563	+	Intron	SNP	G	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAC1	6863	broad.mit.edu	37	7	97363482	97363482	+	Intron	SNP	G	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAC3	6866	broad.mit.edu	37	12	57406247	57406247	+	Intron	SNP	G	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TACC2	10579	broad.mit.edu	37	10	123975001	123975001	+	Intron	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TACC3	10460	broad.mit.edu	37	4	1733067	1733067	+	Intron	SNP	G	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAF3	83860	broad.mit.edu	37	10	7866336	7866336	+	Silent	SNP	G	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAF9B	51616	broad.mit.edu	37	X	77387317	77387317	+	Intron	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAF9B	51616	broad.mit.edu	37	X	77395237	77395237	+	5'Flank	SNP	G	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAL1	6886	broad.mit.edu	37	1	47685389	47685389	+	3'UTR	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TANC1	85461	broad.mit.edu	37	2	160020007	160020007	+	Missense_Mutation	SNP	A	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TANC1	85461	broad.mit.edu	37	2	160028721	160028721	+	Frame_Shift_Del	DEL	G	-	-			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAP2	6891	broad.mit.edu	37	6	32797760	32797760	+	Missense_Mutation	SNP	T	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAZ	6901	broad.mit.edu	37	X	153641776	153641776	+	Intron	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBC1D3P2	440452	broad.mit.edu	37	17	60348783	60348783	+	Missense_Mutation	SNP	C	G	G			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBL1X	6907	broad.mit.edu	37	X	9660312	9660312	+	Intron	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBX18	9096	broad.mit.edu	37	6	85446500	85446500	+	Missense_Mutation	SNP	T	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TCEA2	6919	broad.mit.edu	37	20	62703650	62703650	+	3'UTR	SNP	A	G	G			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TCF4	6925	broad.mit.edu	37	18	52943004	52943004	+	Intron	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TCF4	6925	broad.mit.edu	37	18	53018002	53018002	+	Intron	SNP	T	C	C			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TCL1A	8115	broad.mit.edu	37	14	96178706	96178706	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TCP11L1	55346	broad.mit.edu	37	11	33094290	33094290	+	3'UTR	SNP	T	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TDRD9	122402	broad.mit.edu	37	14	104492517	104492517	+	Intron	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TEP1	7011	broad.mit.edu	37	14	20857351	20857351	+	Intron	SNP	C	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TEP1	7011	broad.mit.edu	37	14	20869772	20869772	+	Intron	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TEX15	56154	broad.mit.edu	37	8	30695124	30695124	+	Silent	SNP	C	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TFDP3	51270	broad.mit.edu	37	X	132350996	132350996	+	3'UTR	SNP	T	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TFRC	7037	broad.mit.edu	37	3	195794416	195794416	+	Missense_Mutation	SNP	G	C	C			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TGM3	7053	broad.mit.edu	37	20	2321104	2321104	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
THOC2	57187	broad.mit.edu	37	X	122840794	122840794	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
THSD7A	221981	broad.mit.edu	37	7	11676130	11676130	+	Silent	SNP	G	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TIAM1	7074	broad.mit.edu	37	21	32537342	32537342	+	Silent	SNP	G	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TIMELESS	8914	broad.mit.edu	37	12	56814763	56814763	+	Missense_Mutation	SNP	T	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TIPIN	54962	broad.mit.edu	37	15	66639603	66639603	+	Intron	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TLR4	7099	broad.mit.edu	37	9	120476380	120476380	+	Silent	SNP	G	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TLR7	51284	broad.mit.edu	37	X	12905272	12905272	+	Missense_Mutation	SNP	T	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEFF1	8577	broad.mit.edu	37	9	103279053	103279053	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEFF1	8577	broad.mit.edu	37	9	103310025	103310025	+	Splice_Site	SNP	G	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM144	55314	broad.mit.edu	37	4	159174649	159174649	+	Silent	SNP	A	G	G			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM176B	28959	broad.mit.edu	37	7	150488658	150488658	+	Silent	SNP	C	A	A	rs146845592	byFrequency	TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM178	130733	broad.mit.edu	37	2	39931220	39931220	+	Splice_Site	SNP	G	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM195	392636	broad.mit.edu	37	7	15424945	15424945	+	Intron	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM200A	114801	broad.mit.edu	37	6	130761637	130761637	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM8C	389827	broad.mit.edu	37	9	136384205	136384205	+	Intron	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM90B	79953	broad.mit.edu	37	20	24523590	24523590	+	Intron	SNP	G	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMPRSS11F	389208	broad.mit.edu	37	4	68935753	68935753	+	Intron	SNP	G	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMPRSS11F	389208	broad.mit.edu	37	4	68938049	68938049	+	Missense_Mutation	SNP	C	G	G	rs150716612	byFrequency	TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMPRSS6	164656	broad.mit.edu	37	22	37462912	37462912	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMTC1	83857	broad.mit.edu	37	12	29669326	29669326	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMTC1	83857	broad.mit.edu	37	12	29904683	29904683	+	Nonsense_Mutation	SNP	C	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNFAIP8L3	388121	broad.mit.edu	37	15	51397328	51397328	+	Missense_Mutation	SNP	A	G	G			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNIP3	79931	broad.mit.edu	37	4	122075623	122075623	+	Intron	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNR	7143	broad.mit.edu	37	1	175375584	175375584	+	Silent	SNP	C	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNXB	7148	broad.mit.edu	37	6	32011608	32011608	+	Silent	SNP	G	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNXB	7148	broad.mit.edu	37	6	32024666	32024666	+	Missense_Mutation	SNP	T	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TOP2B	7155	broad.mit.edu	37	3	25665829	25665829	+	Silent	SNP	G	C	C			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TP53BP1	7158	broad.mit.edu	37	15	43771675	43771676	+	Missense_Mutation	DNP	CT	TA	TA			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPTE	7179	broad.mit.edu	37	21	10916334	10916334	+	Intron	SNP	C	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPTE	7179	broad.mit.edu	37	21	10971592	10971592	+	Intron	SNP	C	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRAF3IP3	80342	broad.mit.edu	37	1	209935992	209935992	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRAT1	50852	broad.mit.edu	37	3	108549715	108549715	+	Intron	SNP	T	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TREM1	54210	broad.mit.edu	37	6	41250567	41250567	+	Intron	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIM29	23650	broad.mit.edu	37	11	119996462	119996462	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIM42	287015	broad.mit.edu	37	3	140419870	140419870	+	3'UTR	SNP	C	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIM48	79097	broad.mit.edu	37	11	55032363	55032363	+	Intron	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIM48	79097	broad.mit.edu	37	11	55038260	55038260	+	3'UTR	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIM68	55128	broad.mit.edu	37	11	4626875	4626875	+	Intron	SNP	G	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIM69	140691	broad.mit.edu	37	15	45047534	45047534	+	Missense_Mutation	SNP	A	G	G			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIM72	493829	broad.mit.edu	37	16	31230652	31230652	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRO	7216	broad.mit.edu	37	X	54950180	54950180	+	Silent	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPA1	8989	broad.mit.edu	37	8	72967563	72967563	+	Intron	SNP	C	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPC3	7222	broad.mit.edu	37	4	122853835	122853835	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPC5	7224	broad.mit.edu	37	X	111025234	111025234	+	Missense_Mutation	SNP	A	G	G			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPM2	7226	broad.mit.edu	37	21	45815319	45815320	+	Nonsense_Mutation	DNP	CC	AA	AA	rs144976050	byFrequency	TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPM2	7226	broad.mit.edu	37	21	45819256	45819256	+	Nonsense_Mutation	SNP	A	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPM3	80036	broad.mit.edu	37	9	73253968	73253968	+	Intron	SNP	G	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TSC2	7249	broad.mit.edu	37	16	2134791	2134791	+	Intron	SNP	G	A	A	rs147608899	by1000genomes	TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TSPAN17	26262	broad.mit.edu	37	5	176084785	176084785	+	3'UTR	SNP	G	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TSPAN33	340348	broad.mit.edu	37	7	128801519	128801519	+	Splice_Site	SNP	G	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TSPYL2	64061	broad.mit.edu	37	X	53114989	53114989	+	Missense_Mutation	SNP	T	G	G			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTC12	54970	broad.mit.edu	37	11	113235676	113235676	+	Missense_Mutation	SNP	G	C	C			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTC3	7267	broad.mit.edu	37	21	38459658	38459658	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTF2	8458	broad.mit.edu	37	1	117605061	117605061	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179396978	179396978	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179459155	179459155	+	Nonsense_Mutation	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179460446	179460446	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179536845	179536845	+	Translation_Start_Site	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179546142	179546142	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTYH2	94015	broad.mit.edu	37	17	72218552	72218552	+	Intron	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TYW1B	441250	broad.mit.edu	37	7	72281203	72281203	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
T	6862	broad.mit.edu	37	6	166574359	166574359	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBA6	55236	broad.mit.edu	37	4	68562390	68562390	+	Missense_Mutation	SNP	G	C	C			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBASH3A	53347	broad.mit.edu	37	21	43833217	43833217	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UCK2	7371	broad.mit.edu	37	1	165876981	165876982	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UGGT2	55757	broad.mit.edu	37	13	96622634	96622634	+	Intron	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UGT2B15	7366	broad.mit.edu	37	4	69513061	69513061	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UGT3A2	167127	broad.mit.edu	37	5	36038112	36038112	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UGT8	7368	broad.mit.edu	37	4	115597059	115597059	+	Intron	SNP	G	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UHRF1BP1L	23074	broad.mit.edu	37	12	100451549	100451549	+	Intron	SNP	T	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UHRF1BP1L	23074	broad.mit.edu	37	12	100453575	100453575	+	Intron	SNP	A	C	C			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UNC13C	440279	broad.mit.edu	37	15	54817797	54817797	+	Silent	SNP	T	C	C			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UNC5C	8633	broad.mit.edu	37	4	96140382	96140382	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UNC5D	137970	broad.mit.edu	37	8	35608282	35608282	+	Nonsense_Mutation	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UNC80	285175	broad.mit.edu	37	2	210642131	210642131	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UPF3B	65109	broad.mit.edu	37	X	118979170	118979170	+	Missense_Mutation	SNP	T	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UQCC	55245	broad.mit.edu	37	20	33999771	33999771	+	Translation_Start_Site	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UQCRB	7381	broad.mit.edu	37	8	97247898	97247898	+	5'Flank	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UQCRC2	7385	broad.mit.edu	37	16	21991823	21991823	+	Intron	SNP	A	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USH2A	7399	broad.mit.edu	37	1	216262470	216262470	+	Silent	SNP	C	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USH2A	7399	broad.mit.edu	37	1	216465702	216465702	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USH2A	7399	broad.mit.edu	37	1	216538348	216538348	+	Frame_Shift_Del	DEL	C	-	-			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP35	57558	broad.mit.edu	37	11	77916913	77916913	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP36	57602	broad.mit.edu	37	17	76831480	76831480	+	Silent	SNP	G	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP4	7375	broad.mit.edu	37	3	49343230	49343230	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP9X	8239	broad.mit.edu	37	X	41048422	41048422	+	Intron	SNP	A	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UTP20	27340	broad.mit.edu	37	12	101689353	101689353	+	Silent	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UTRN	7402	broad.mit.edu	37	6	144744614	144744614	+	Intron	SNP	C	G	G			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	36812790	36812790	+	IGR	SNP	G	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	37233045	37233045	+	IGR	SNP	G	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	37284255	37284255	+	IGR	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	45742082	45742082	+	IGR	SNP	C	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	49013278	49013278	+	IGR	SNP	G	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	55086471	55086471	+	IGR	SNP	G	C	C			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	55198294	55198294	+	IGR	SNP	A	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	55258910	55258910	+	IGR	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	56280078	56280078	+	IGR	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	62012286	62012286	+	IGR	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	89466184	89466184	+	IGR	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	106410112	106410112	+	IGR	SNP	C	G	G			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	127829090	127829090	+	IGR	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	127873453	127873453	+	IGR	SNP	G	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	129499377	129499377	+	IGR	SNP	G	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	38597446	38597446	+	IGR	SNP	G	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	84842372	84842372	+	IGR	SNP	G	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	19240382	19240382	+	IGR	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	19241012	19241012	+	IGR	SNP	G	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	19957028	19957028	+	IGR	SNP	G	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	19968952	19968952	+	IGR	SNP	A	G	G			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	21834520	21834520	+	IGR	SNP	G	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	23701486	23701486	+	IGR	SNP	T	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	25940091	25940091	+	IGR	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	19188751	19188751	+	IGR	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	19443801	19443801	+	IGR	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	20084459	20084459	+	IGR	SNP	G	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	20137869	20137869	+	IGR	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	20148274	20148274	+	IGR	SNP	C	A	A	rs147721390	by1000genomes	TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	29142709	29142709	+	IGR	SNP	G	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	30297985	30297985	+	IGR	SNP	G	C	C			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	31745469	31745469	+	IGR	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	49264671	49264671	+	IGR	SNP	T	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	31963314	31963314	+	IGR	SNP	C	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	32619559	32619559	+	IGR	SNP	G	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	33379825	33379825	+	IGR	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	33401458	33401458	+	IGR	SNP	G	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	33412929	33412929	+	IGR	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	33500520	33500520	+	IGR	SNP	G	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	48883963	48883963	+	IGR	SNP	A	G	G			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	5257194	5257194	+	IGR	SNP	A	G	G			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	52689484	52689484	+	IGR	SNP	G	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	56720840	56720840	+	IGR	SNP	G	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	60391297	60391297	+	IGR	SNP	G	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	75743500	75743500	+	IGR	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	19400538	19400538	+	IGR	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	20657361	20657361	+	IGR	SNP	T	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	21544472	21544472	+	IGR	SNP	G	C	C			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	25409799	25409799	+	IGR	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	62223911	62223911	+	IGR	SNP	G	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	14146618	14146618	+	IGR	SNP	G	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	14999257	14999258	+	IGR	INS	-	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	26233214	26233214	+	IGR	SNP	G	C	C			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	29306309	29306309	+	IGR	SNP	G	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	33422342	33422342	+	IGR	SNP	A	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	37724246	37724246	+	IGR	SNP	A	C	C			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	22868918	22868918	+	IGR	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	46640043	46640043	+	IGR	SNP	G	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	46640681	46640681	+	IGR	SNP	G	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	51906763	51906763	+	IGR	SNP	G	C	C			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	54276451	54276451	+	IGR	SNP	T	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	106433651	106433651	+	IGR	SNP	G	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	120016035	120016035	+	IGR	SNP	A	G	G			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	149037676	149037676	+	IGR	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	150876430	150876430	+	IGR	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	164312346	164312346	+	IGR	SNP	G	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	192216383	192216383	+	IGR	SNP	G	C	C			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	240137531	240137531	+	IGR	SNP	G	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	248309432	248309432	+	IGR	SNP	A	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	91646204	91646204	+	IGR	SNP	G	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	62958944	62958944	+	IGR	SNP	G	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	10862876	10862876	+	IGR	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	11114698	11114698	+	IGR	SNP	C	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	14900079	14900079	+	IGR	SNP	G	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	22	16123282	16123282	+	IGR	SNP	A	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	22	16346033	16346033	+	IGR	SNP	A	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	22	16352158	16352158	+	IGR	SNP	C	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	22	16352198	16352198	+	IGR	SNP	C	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	22	16414309	16414309	+	IGR	SNP	T	C	C			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	22	16914202	16914202	+	IGR	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	22	27282970	27282970	+	IGR	SNP	G	C	C			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	104111443	104111443	+	IGR	SNP	G	C	C			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	130969963	130969963	+	IGR	SNP	G	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	130987139	130987139	+	IGR	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	132368793	132368793	+	IGR	SNP	A	G	G			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	17566800	17566800	+	IGR	SNP	G	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	207284163	207284163	+	IGR	SNP	T	C	C			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	26385084	26385084	+	IGR	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	58688946	58688946	+	IGR	SNP	T	G	G			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	81426516	81426516	+	IGR	SNP	G	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	91800182	91800182	+	IGR	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	91800512	91800512	+	IGR	SNP	T	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	129754274	129754274	+	IGR	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	142895279	142895279	+	IGR	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	179367527	179367528	+	IGR	INS	-	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	31223290	31223290	+	IGR	SNP	T	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	31494889	31494889	+	IGR	SNP	G	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	35258259	35258259	+	IGR	SNP	A	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	35258266	35258266	+	IGR	SNP	G	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	75263628	75263628	+	IGR	SNP	T	G	G			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	94226368	94226368	+	IGR	SNP	G	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	97926380	97926380	+	IGR	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	118496389	118496389	+	IGR	SNP	T	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	137276864	137276864	+	IGR	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	138369483	138369483	+	IGR	SNP	G	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	165577426	165577426	+	IGR	SNP	G	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	190395536	190395536	+	IGR	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	28824818	28824818	+	IGR	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	33012805	33012805	+	IGR	SNP	C	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	63684435	63684435	+	IGR	SNP	G	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	69170185	69170185	+	IGR	SNP	A	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	9388866	9388866	+	IGR	DEL	G	-	-			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	9557603	9557603	+	IGR	SNP	G	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	105751234	105751234	+	IGR	SNP	G	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	107061476	107061476	+	IGR	SNP	A	G	G			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	120911948	120911948	+	IGR	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	127121029	127121029	+	IGR	SNP	A	G	G			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	130325794	130325794	+	IGR	SNP	C	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	25910057	25910057	+	IGR	DEL	G	-	-			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	31053902	31053902	+	IGR	SNP	G	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	50571471	50571471	+	IGR	SNP	C	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	113903098	113903098	+	IGR	SNP	A	C	C			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	168689079	168689079	+	IGR	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	80774377	80774377	+	IGR	SNP	A	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	138125701	138125701	+	IGR	SNP	G	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	16624858	16624858	+	IGR	SNP	T	G	G			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	51667998	51667998	+	IGR	SNP	G	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	56373201	56373201	+	IGR	SNP	T	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	56707566	56707566	+	IGR	SNP	C	G	G			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	57128300	57128300	+	IGR	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	57128470	57128470	+	IGR	SNP	C	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	62708695	62708695	+	IGR	SNP	G	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	63160871	63160871	+	IGR	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	65976647	65976647	+	IGR	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	11778149	11778149	+	IGR	SNP	G	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	128099557	128099557	+	IGR	SNP	G	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	29886403	29886403	+	IGR	SNP	C	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	47491751	47491752	+	IGR	DNP	CT	TA	TA			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	47885473	47885473	+	IGR	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	50652893	50652893	+	IGR	DEL	C	-	-			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	135133812	135133812	+	IGR	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	13986297	13986297	+	IGR	SNP	C	G	G			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	30559381	30559381	+	IGR	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	43600585	43600585	+	IGR	SNP	G	C	C			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	68429198	68429198	+	IGR	SNP	C	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	70711563	70711563	+	IGR	SNP	G	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	79164655	79164655	+	IGR	SNP	G	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	100056870	100056870	+	IGR	SNP	G	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	100057300	100057300	+	IGR	SNP	G	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	101035147	101035147	+	IGR	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	106297057	106297057	+	IGR	SNP	G	C	C			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	121672259	121672259	+	IGR	SNP	G	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	124461894	124461894	+	IGR	SNP	G	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	146036640	146036640	+	IGR	SNP	C	G	G			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	149399509	149399509	+	IGR	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	151073257	151073257	+	IGR	SNP	G	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	151648981	151648981	+	IGR	SNP	C	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	38338978	38338978	+	IGR	SNP	G	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	48183974	48183974	+	IGR	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	48305346	48305346	+	IGR	SNP	G	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	58012334	58012334	+	IGR	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	65041152	65041152	+	IGR	SNP	G	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	72745932	72745932	+	IGR	SNP	G	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	74964038	74964038	+	IGR	SNP	G	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	7619158	7619158	+	IGR	SNP	C	G	G			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	80845661	80845661	+	IGR	SNP	G	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	88622475	88622475	+	IGR	SNP	G	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	89295649	89295649	+	IGR	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	92543347	92543347	+	IGR	SNP	A	G	G			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	95876584	95876584	+	IGR	SNP	G	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VANGL2	57216	broad.mit.edu	37	1	160390211	160390211	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VAT1L	57687	broad.mit.edu	37	16	78005613	78005614	+	Intron	INS	-	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VAV1	7409	broad.mit.edu	37	19	6773061	6773061	+	Intron	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VAV3	10451	broad.mit.edu	37	1	108152626	108152626	+	Intron	SNP	A	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VAX1	11023	broad.mit.edu	37	10	118896174	118896174	+	Intron	SNP	G	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VCAM1	7412	broad.mit.edu	37	1	101185341	101185341	+	5'UTR	SNP	C	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VILL	50853	broad.mit.edu	37	3	38044020	38044022	+	In_Frame_Del	DEL	TCT	-	-			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VN1R2	317701	broad.mit.edu	37	19	53762292	53762292	+	Missense_Mutation	SNP	C	G	G			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VOPP1	81552	broad.mit.edu	37	7	55565340	55565340	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VPS13C	54832	broad.mit.edu	37	15	62160902	62160902	+	Missense_Mutation	SNP	G	A	A	rs149574145		TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VPS36	51028	broad.mit.edu	37	13	53008884	53008884	+	Intron	SNP	T	C	C			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WASF3	10810	broad.mit.edu	37	13	27255238	27255238	+	Missense_Mutation	SNP	A	G	G			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WAS	7454	broad.mit.edu	37	X	48547115	48547115	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WBP11	51729	broad.mit.edu	37	12	14943703	14943703	+	Intron	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDFY3	23001	broad.mit.edu	37	4	85724621	85724621	+	Splice_Site	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR35	57539	broad.mit.edu	37	2	20180465	20180465	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR36	134430	broad.mit.edu	37	5	110439831	110439831	+	Intron	SNP	G	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR44	54521	broad.mit.edu	37	X	117480358	117480358	+	5'UTR	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR52	55779	broad.mit.edu	37	3	113084979	113084979	+	Silent	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR52	55779	broad.mit.edu	37	3	113084981	113084981	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR63	126820	broad.mit.edu	37	1	85547062	85547062	+	Silent	SNP	A	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR90	197335	broad.mit.edu	37	16	705382	705382	+	Silent	SNP	C	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WNK3	65267	broad.mit.edu	37	X	54337611	54337611	+	Silent	SNP	T	C	C			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WNT16	51384	broad.mit.edu	37	7	120969762	120969762	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WNT2	7472	broad.mit.edu	37	7	116962943	116962943	+	Intron	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WT1	7490	broad.mit.edu	37	11	32414198	32414198	+	Intron	SNP	G	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WWC2	80014	broad.mit.edu	37	4	184114711	184114711	+	Intron	SNP	A	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WWP1	11059	broad.mit.edu	37	8	87439718	87439718	+	Intron	SNP	A	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WWP1	11059	broad.mit.edu	37	8	87479135	87479135	+	3'UTR	SNP	A	G	G			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XIRP2	129446	broad.mit.edu	37	2	168101499	168101499	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XRCC5	7520	broad.mit.edu	37	2	217070015	217070015	+	3'UTR	SNP	G	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
YIPF3	25844	broad.mit.edu	37	6	43484785	43484786	+	5'Flank	DNP	CG	TT	TT			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
YSK4	80122	broad.mit.edu	37	2	135745412	135745412	+	Missense_Mutation	SNP	C	A	A	rs145468662		TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZBTB41	360023	broad.mit.edu	37	1	197169211	197169211	+	Silent	SNP	T	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZC3H13	23091	broad.mit.edu	37	13	46549613	46549616	+	Frame_Shift_Del	DEL	CTCT	-	-			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZC3H13	23091	broad.mit.edu	37	13	46559672	46559672	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZC3H18	124245	broad.mit.edu	37	16	88666115	88666115	+	Intron	SNP	G	C	C			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZCCHC3	85364	broad.mit.edu	37	20	278867	278867	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZCCHC5	203430	broad.mit.edu	37	X	77912725	77912725	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZDHHC9	51114	broad.mit.edu	37	X	128946887	128946887	+	Intron	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZFHX3	463	broad.mit.edu	37	16	72993847	72993847	+	Silent	SNP	C	A	A	rs143119253	byFrequency	TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZFP30	22835	broad.mit.edu	37	19	38126960	38126960	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZFPM2	23414	broad.mit.edu	37	8	106801085	106801085	+	Silent	SNP	G	C	C			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZFPM2	23414	broad.mit.edu	37	8	106814109	106814109	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZIC3	7547	broad.mit.edu	37	X	136652125	136652125	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZIM3	114026	broad.mit.edu	37	19	57649750	57649750	+	Intron	SNP	T	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZMYM3	9203	broad.mit.edu	37	X	70471214	70471214	+	Intron	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZMYND12	84217	broad.mit.edu	37	1	42898742	42898742	+	Intron	SNP	C	G	G			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF100	163227	broad.mit.edu	37	19	21909726	21909726	+	Frame_Shift_Del	DEL	C	-	-			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF107	51427	broad.mit.edu	37	7	64166746	64166746	+	Missense_Mutation	SNP	A	G	G			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF157	7712	broad.mit.edu	37	X	47272883	47272883	+	Nonsense_Mutation	SNP	G	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF18	7566	broad.mit.edu	37	17	11894233	11894233	+	Intron	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF18	7566	broad.mit.edu	37	17	11894237	11894237	+	Intron	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF214	7761	broad.mit.edu	37	11	7022736	7022736	+	Nonsense_Mutation	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF223	7766	broad.mit.edu	37	19	44570525	44570525	+	Nonsense_Mutation	SNP	G	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF227	7770	broad.mit.edu	37	19	44739572	44739572	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF234	10780	broad.mit.edu	37	19	44662182	44662182	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF277	11179	broad.mit.edu	37	7	111976278	111976278	+	Intron	SNP	A	G	G			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF335	63925	broad.mit.edu	37	20	44589559	44589559	+	Intron	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF423	23090	broad.mit.edu	37	16	49670060	49670060	+	Missense_Mutation	SNP	C	G	G			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF438	220929	broad.mit.edu	37	10	31138643	31138643	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF445	353274	broad.mit.edu	37	3	44541551	44541551	+	Intron	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF449	203523	broad.mit.edu	37	X	134481012	134481012	+	5'UTR	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF454	285676	broad.mit.edu	37	5	178391974	178391974	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF521	25925	broad.mit.edu	37	18	22805191	22805191	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF595	152687	broad.mit.edu	37	4	53452	53452	+	Intron	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF607	84775	broad.mit.edu	37	19	38200828	38200828	+	Intron	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF609	23060	broad.mit.edu	37	15	64821726	64821726	+	Intron	SNP	C	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF614	80110	broad.mit.edu	37	19	52521542	52521542	+	Intron	SNP	A	G	G			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF618	114991	broad.mit.edu	37	9	116811732	116811732	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF626	199777	broad.mit.edu	37	19	20808333	20808333	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF638	27332	broad.mit.edu	37	2	71591170	71591170	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF680	340252	broad.mit.edu	37	7	63982531	63982531	+	Missense_Mutation	SNP	T	C	C			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF775	285971	broad.mit.edu	37	7	150094431	150094431	+	Missense_Mutation	SNP	A	C	C			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF79	7633	broad.mit.edu	37	9	130206726	130206726	+	Nonsense_Mutation	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF826	664701	broad.mit.edu	37	19	20501514	20501515	+	Intron	DEL	GT	-	-			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF828	283489	broad.mit.edu	37	13	115090570	115090570	+	Missense_Mutation	SNP	A	C	C			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF831	128611	broad.mit.edu	37	20	57829372	57829372	+	Missense_Mutation	SNP	G	C	C			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF862	643641	broad.mit.edu	37	7	149561358	149561358	+	Silent	SNP	C	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF90	7643	broad.mit.edu	37	19	20235986	20235986	+	RNA	SNP	G	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZP4	57829	broad.mit.edu	37	1	238053432	238053432	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZPLD1	131368	broad.mit.edu	37	3	102157407	102157407	+	Missense_Mutation	SNP	T	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZSCAN22	342945	broad.mit.edu	37	19	58849788	58849788	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZWILCH	55055	broad.mit.edu	37	15	66797595	66797595	+	5'UTR	SNP	G	C	C			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZWILCH	55055	broad.mit.edu	37	15	66811350	66811350	+	Nonsense_Mutation	SNP	G	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZXDB	158586	broad.mit.edu	37	X	57618742	57618742	+	Silent	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	134648767	134648767	+	Intron	SNP	G	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	102677973	102677973	+	Intron	SNP	G	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	55062185	55062185	+	Intron	SNP	G	C	C			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	55065653	55065653	+	RNA	DEL	C	-	-			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	58763557	58763557	+	Intron	SNP	G	C	C			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	98126390	98126390	+	Intron	SNP	G	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	22409647	22409647	+	Intron	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	22985135	22985135	+	Intron	SNP	G	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	102305084	102305084	+	5'Flank	SNP	T	C	C			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	21544350	21544350	+	Intron	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	21559377	21559377	+	Intron	SNP	A	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	3144759	3144759	+	3'UTR	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	22785328	22785328	+	Intron	SNP	C	G	G			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	13634808	13634808	+	RNA	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	173331955	173331955	+	Intron	SNP	G	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	22	16150995	16150995	+	Intron	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	89459461	89459461	+	RNA	SNP	G	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	89999589	89999589	+	Intron	SNP	T	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	91679021	91679021	+	5'Flank	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	142008589	142008589	+	Intron	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	142013518	142013518	+	Intron	SNP	G	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	142013522	142013522	+	Intron	SNP	A	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	142020953	142020954	+	Intron	DNP	GC	AA	AA			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	142099597	142099597	+	Intron	DEL	G	-	-			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	142124099	142124099	+	Intron	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	142124489	142124489	+	Intron	SNP	C	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	142448616	142448616	+	Intron	SNP	C	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	148978982	148978982	+	Intron	SNP	G	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	73157043	73157043	+	Intron	SNP	C	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	21278323	21278323	+	RNA	SNP	G	T	T			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
