Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer
ABCC9	10060	broad.mit.edu	37	12	22031700	22031700	+	Intron	DEL	T	-	-	rs4148668		TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACAD10	80724	broad.mit.edu	37	12	112159472	112159472	+	Intron	SNP	C	A	A			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACSM2B	348158	broad.mit.edu	37	16	20548544	20548544	+	3'UTR	SNP	G	T	T			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACSS1	84532	broad.mit.edu	37	20	24994697	24994697	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACVR1	90	broad.mit.edu	37	2	158630717	158630717	+	Intron	SNP	G	A	A			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM6	8755	broad.mit.edu	37	14	107048563	107048563	+	Intron	SNP	G	T	T			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS5	11096	broad.mit.edu	37	21	28337427	28337427	+	Intron	SNP	C	G	G			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS9	56999	broad.mit.edu	37	3	64617271	64617271	+	Intron	SNP	A	G	G			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTSL3	57188	broad.mit.edu	37	15	84588411	84588411	+	Intron	SNP	G	T	T			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTSL4	54507	broad.mit.edu	37	1	150530998	150530998	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AFF3	3899	broad.mit.edu	37	2	100182146	100182146	+	Intron	SNP	C	G	G			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AGBL2	79841	broad.mit.edu	37	11	47681676	47681676	+	3'UTR	SNP	A	T	T			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AGL	178	broad.mit.edu	37	1	100349809	100349809	+	Intron	SNP	G	T	T			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AKAP4	8852	broad.mit.edu	37	X	49957059	49957059	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AKR1B15	441282	broad.mit.edu	37	7	134260733	134260733	+	Intron	SNP	T	C	C			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALK	238	broad.mit.edu	37	2	29940451	29940452	+	Missense_Mutation	DNP	GC	AA	AA			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALOX5	240	broad.mit.edu	37	10	45924225	45924225	+	Intron	SNP	G	A	A			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALPK2	115701	broad.mit.edu	37	18	56204135	56204135	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANK3	288	broad.mit.edu	37	10	61978457	61978457	+	Intron	SNP	C	G	G			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKFN1	162282	broad.mit.edu	37	17	54520139	54520139	+	Intron	SNP	C	A	A			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKRD30B	374860	broad.mit.edu	37	18	14851708	14851708	+	Silent	SNP	A	T	T			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKRD55	79722	broad.mit.edu	37	5	55407671	55407671	+	Intron	SNP	C	T	T			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANO5	203859	broad.mit.edu	37	11	22239977	22239977	+	Intron	SNP	T	A	A			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANP32D	23519	broad.mit.edu	37	12	48866596	48866597	+	Frame_Shift_Ins	INS	-	A	A			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANXA7	310	broad.mit.edu	37	10	75157963	75157963	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARFIP2	23647	broad.mit.edu	37	11	6502634	6502634	+	5'Flank	SNP	C	A	A			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGAP15	55843	broad.mit.edu	37	2	144194614	144194614	+	Intron	SNP	G	A	A			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGAP15	55843	broad.mit.edu	37	2	144315003	144315003	+	Intron	SNP	A	G	G			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARID3B	10620	broad.mit.edu	37	15	74882111	74882111	+	Intron	SNP	T	C	C			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASH1L	55870	broad.mit.edu	37	1	155308253	155308253	+	Intron	SNP	A	G	G			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASTN1	460	broad.mit.edu	37	1	176913186	176913186	+	Intron	SNP	G	A	A			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASTN1	460	broad.mit.edu	37	1	176983779	176983779	+	Intron	SNP	G	T	T			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASTN2	23245	broad.mit.edu	37	9	120065888	120065888	+	Intron	SNP	C	A	A			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP1A4	480	broad.mit.edu	37	1	160143392	160143392	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATR	545	broad.mit.edu	37	3	142176600	142176600	+	Intron	SNP	T	A	A			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATR	545	broad.mit.edu	37	3	142281289	142281289	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BAGE2	85319	broad.mit.edu	37	21	11026930	11026930	+	Intron	SNP	A	T	T			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BAGE2	85319	broad.mit.edu	37	21	11094409	11094409	+	Intron	DEL	C	-	-	rs61674188		TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BAHD1	22893	broad.mit.edu	37	15	40757401	40757401	+	Intron	SNP	G	A	A			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BARHL1	56751	broad.mit.edu	37	9	135464768	135464768	+	Silent	SNP	C	A	A			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BAT4	7918	broad.mit.edu	37	6	31630177	31630177	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BAZ2B	29994	broad.mit.edu	37	2	160243034	160243034	+	Nonsense_Mutation	SNP	G	A	A			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BCAT1	586	broad.mit.edu	37	12	25031629	25031629	+	Intron	SNP	G	A	A			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BEND2	139105	broad.mit.edu	37	X	18213466	18213466	+	Missense_Mutation	SNP	G	T	T	rs28496595		TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BICC1	80114	broad.mit.edu	37	10	60559947	60559947	+	Intron	SNP	A	G	G			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BMP7	655	broad.mit.edu	37	20	55803116	55803117	+	Intron	DNP	GG	TT	TT			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BMS1	9790	broad.mit.edu	37	10	43294285	43294285	+	Intron	SNP	C	T	T			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BRMS1	25855	broad.mit.edu	37	11	66108603	66108603	+	Intron	SNP	C	A	A			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C10orf128	170371	broad.mit.edu	37	10	50369035	50369035	+	Intron	SNP	A	G	G			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C10orf128	170371	broad.mit.edu	37	10	50386199	50386199	+	Intron	SNP	C	A	A			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C10orf26	54838	broad.mit.edu	37	10	104569445	104569445	+	Intron	SNP	C	A	A			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C10orf96	374355	broad.mit.edu	37	10	118138000	118138001	+	Missense_Mutation	DNP	CA	AG	AG			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C11orf80	79703	broad.mit.edu	37	11	66589945	66589945	+	Intron	SNP	G	T	T			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C13orf31	144811	broad.mit.edu	37	13	44455589	44455589	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C15orf27	123591	broad.mit.edu	37	15	76518156	76518156	+	Intron	SNP	T	C	C			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C15orf51	196968	broad.mit.edu	37	15	100332723	100332723	+	RNA	SNP	G	T	T			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C18orf32	497661	broad.mit.edu	37	18	47017314	47017314	+	Intron	SNP	A	C	C			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C18orf34	374864	broad.mit.edu	37	18	30672865	30672865	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C19orf51	352909	broad.mit.edu	37	19	55670944	55670944	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf106	55765	broad.mit.edu	37	1	200880665	200880666	+	Missense_Mutation	DNP	GC	AA	AA			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf141	400757	broad.mit.edu	37	1	67561035	67561035	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf173	127254	broad.mit.edu	37	1	75039299	75039299	+	Intron	SNP	T	A	A			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf173	127254	broad.mit.edu	37	1	75078310	75078310	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C21orf99	149992	broad.mit.edu	37	21	14485239	14485239	+	Intron	SNP	G	A	A			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C5orf25	375484	broad.mit.edu	37	5	175735327	175735327	+	Intron	SNP	G	T	T			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C6orf222	389384	broad.mit.edu	37	6	36287308	36287308	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C7orf10	79783	broad.mit.edu	37	7	40868075	40868075	+	Intron	SNP	A	T	T			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C7orf64	84060	broad.mit.edu	37	7	92158932	92158932	+	Missense_Mutation	SNP	A	C	C			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C9orf72	203228	broad.mit.edu	37	9	27565490	27565490	+	Intron	SNP	T	A	A			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1B	774	broad.mit.edu	37	9	140948493	140948493	+	Intron	SNP	G	T	T			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1E	777	broad.mit.edu	37	1	181700418	181700418	+	Intron	SNP	G	A	A	rs111620668		TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1E	777	broad.mit.edu	37	1	181721126	181721126	+	Intron	SNP	T	A	A			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CALM3	808	broad.mit.edu	37	19	47112289	47112289	+	Intron	SNP	C	G	G			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CC2D2A	57545	broad.mit.edu	37	4	15504503	15504503	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCAR1	55749	broad.mit.edu	37	10	70532887	70532887	+	Intron	SNP	G	C	C			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC142	84865	broad.mit.edu	37	2	74708398	74708398	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC33	80125	broad.mit.edu	37	15	74574148	74574148	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCR8	1237	broad.mit.edu	37	3	39373778	39373778	+	Intron	SNP	G	T	T			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD1D	912	broad.mit.edu	37	1	158146789	158146789	+	5'Flank	SNP	G	T	T			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD200	4345	broad.mit.edu	37	3	112065092	112065092	+	Intron	SNP	C	A	A			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD247	919	broad.mit.edu	37	1	167489364	167489364	+	5'Flank	SNP	A	T	T			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD36	948	broad.mit.edu	37	7	80108073	80108073	+	Intron	SNP	A	G	G			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD86	942	broad.mit.edu	37	3	121828232	121828232	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDC14C	168448	broad.mit.edu	37	7	48965407	48965407	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH10	1008	broad.mit.edu	37	5	24511668	24511668	+	Intron	SNP	G	C	C			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH18	1016	broad.mit.edu	37	5	19591214	19591214	+	Silent	SNP	T	A	A			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CECR2	27443	broad.mit.edu	37	22	18020588	18020588	+	Intron	SNP	T	G	G			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHD3	1107	broad.mit.edu	37	17	7801419	7801419	+	Nonsense_Mutation	SNP	C	T	T			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHD5	26038	broad.mit.edu	37	1	6196750	6196750	+	Intron	SNP	C	A	A			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHRD	8646	broad.mit.edu	37	3	184105183	184105183	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLCN3	1182	broad.mit.edu	37	4	170625361	170625361	+	Intron	SNP	G	T	T			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLCN5	1184	broad.mit.edu	37	X	49775325	49775325	+	Intron	SNP	G	T	T			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLEC4F	165530	broad.mit.edu	37	2	71038391	71038391	+	Intron	SNP	G	T	T			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLU	1191	broad.mit.edu	37	8	27467841	27467841	+	Intron	SNP	G	T	T			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLU	1191	broad.mit.edu	37	8	27472255	27472255	+	Missense_Mutation	SNP	T	C	C	rs2077086		TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNGA3	1261	broad.mit.edu	37	2	99008318	99008318	+	Intron	SNP	C	T	T			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNR1	1268	broad.mit.edu	37	6	88854039	88854039	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTNAP2	26047	broad.mit.edu	37	7	146592419	146592419	+	Intron	SNP	C	T	T			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COG2	22796	broad.mit.edu	37	1	230825682	230825682	+	Intron	SNP	A	G	G			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COG5	10466	broad.mit.edu	37	7	107181815	107181816	+	Intron	INS	-	C	C			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL15A1	1306	broad.mit.edu	37	9	101806867	101806867	+	Silent	SNP	G	A	A	rs138283764	by1000genomes	TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL1A2	1278	broad.mit.edu	37	7	94055427	94055427	+	Intron	SNP	T	C	C			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL22A1	169044	broad.mit.edu	37	8	139889948	139889948	+	Intron	SNP	G	T	T			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL27A1	85301	broad.mit.edu	37	9	116931659	116931659	+	Silent	SNP	C	A	A			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL2A1	1280	broad.mit.edu	37	12	48380838	48380838	+	Intron	SNP	T	A	A			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL4A1	1282	broad.mit.edu	37	13	110814736	110814736	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL5A2	1290	broad.mit.edu	37	2	189933534	189933534	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL7A1	1294	broad.mit.edu	37	3	48607596	48607596	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COPB1	1315	broad.mit.edu	37	11	14496148	14496148	+	Nonsense_Mutation	SNP	C	A	A			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPN1	1369	broad.mit.edu	37	10	101829549	101829549	+	Silent	SNP	G	T	T			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPNE4	131034	broad.mit.edu	37	3	131436557	131436557	+	Intron	SNP	C	A	A			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPS1	1373	broad.mit.edu	37	2	211447412	211447412	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CRLF1	9244	broad.mit.edu	37	19	18709495	18709496	+	Intron	DEL	AC	-	-			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CRTAC1	55118	broad.mit.edu	37	10	99771121	99771121	+	Intron	SNP	C	A	A			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD1	64478	broad.mit.edu	37	8	2820774	2820774	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD1	64478	broad.mit.edu	37	8	4646069	4646069	+	Intron	SNP	T	G	G			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD3	114788	broad.mit.edu	37	8	113276091	113276091	+	Intron	SNP	C	A	A			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTNNA2	1496	broad.mit.edu	37	2	80364061	80364062	+	Intron	DNP	GG	CT	CT			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CXorf57	55086	broad.mit.edu	37	X	105865786	105865786	+	Intron	SNP	G	A	A			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CXorf64	100130613	broad.mit.edu	37	X	125955417	125955417	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYB5R2	51700	broad.mit.edu	37	11	7693706	7693706	+	Frame_Shift_Del	DEL	C	-	-			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYLD	1540	broad.mit.edu	37	16	50815347	50815347	+	Intron	SNP	T	A	A			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP2A7	1549	broad.mit.edu	37	19	41531898	41531898	+	Intron	SNP	G	C	C			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP2A7	1549	broad.mit.edu	37	19	41533253	41533253	+	Intron	SNP	T	C	C			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYR61	3491	broad.mit.edu	37	1	86047826	86047826	+	Missense_Mutation	SNP	G	A	A	rs146738107		TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DACH2	117154	broad.mit.edu	37	X	85416100	85416100	+	Intron	SNP	G	T	T			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCBLD2	131566	broad.mit.edu	37	3	98518735	98518735	+	Intron	SNP	T	G	G			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCD	117159	broad.mit.edu	37	12	55042175	55042175	+	5'Flank	SNP	T	A	A			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCX	1641	broad.mit.edu	37	X	110546731	110546731	+	Intron	SNP	G	C	C			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DDR1	780	broad.mit.edu	37	6	30861222	30861222	+	Intron	DEL	G	-	-			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DEFB136	613210	broad.mit.edu	37	8	11832060	11832060	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DENND2C	163259	broad.mit.edu	37	1	115151428	115151428	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DENND5B	160518	broad.mit.edu	37	12	31633142	31633142	+	Missense_Mutation	SNP	T	G	G			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DFNB31	25861	broad.mit.edu	37	9	117168637	117168637	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DGKA	1606	broad.mit.edu	37	12	56336147	56336147	+	Intron	SNP	G	T	T			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DIS3L2	129563	broad.mit.edu	37	2	233028203	233028203	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DISP1	84976	broad.mit.edu	37	1	223156534	223156534	+	Intron	SNP	G	C	C			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DKC1	1736	broad.mit.edu	37	X	153996853	153996853	+	Intron	SNP	A	T	T			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DMKN	93099	broad.mit.edu	37	19	36004272	36004272	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH2	146754	broad.mit.edu	37	17	7701482	7701482	+	Silent	SNP	G	T	T			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH3	55567	broad.mit.edu	37	16	21051240	21051240	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH8	1769	broad.mit.edu	37	6	38781992	38781992	+	Intron	SNP	G	C	C			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH8	1769	broad.mit.edu	37	6	38864052	38864052	+	Intron	SNP	G	A	A			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH8	1769	broad.mit.edu	37	6	38942452	38942452	+	Intron	SNP	G	T	T			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNASE2B	58511	broad.mit.edu	37	1	84880433	84880433	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DOCK10	55619	broad.mit.edu	37	2	225709558	225709558	+	Splice_Site	SNP	T	A	A			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DOCK8	81704	broad.mit.edu	37	9	414591	414591	+	Intron	SNP	G	A	A	rs147358939	by1000genomes	TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DOCK9	23348	broad.mit.edu	37	13	99462449	99462449	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DPEP2	64174	broad.mit.edu	37	16	68025095	68025095	+	Intron	SNP	G	T	T			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DPP6	1804	broad.mit.edu	37	7	154183409	154183409	+	Intron	SNP	G	T	T			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DPPA4	55211	broad.mit.edu	37	3	109056280	109056280	+	Intron	SNP	C	A	A			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DSG1	1828	broad.mit.edu	37	18	28908227	28908227	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DSG2	1829	broad.mit.edu	37	18	29122617	29122617	+	Silent	SNP	C	T	T			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DST	667	broad.mit.edu	37	6	56327725	56327725	+	Intron	SNP	T	C	C			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DST	667	broad.mit.edu	37	6	56371575	56371575	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DYNC1H1	1778	broad.mit.edu	37	14	102508666	102508666	+	Intron	SNP	A	C	C			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DYSF	8291	broad.mit.edu	37	2	71766214	71766214	+	Intron	SNP	G	A	A			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EBF2	64641	broad.mit.edu	37	8	25718470	25718470	+	Intron	SNP	G	C	C			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EBF2	64641	broad.mit.edu	37	8	25899680	25899680	+	Silent	SNP	G	T	T			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ECT2	1894	broad.mit.edu	37	3	172538090	172538090	+	3'UTR	SNP	A	C	C			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EDAR	10913	broad.mit.edu	37	2	109513583	109513583	+	Missense_Mutation	SNP	T	G	G			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EFTUD1	79631	broad.mit.edu	37	15	82512599	82512599	+	Intron	SNP	C	A	A			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EHBP1	23301	broad.mit.edu	37	2	63165942	63165942	+	Intron	DEL	A	-	-			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EHMT1	79813	broad.mit.edu	37	9	140693353	140693353	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ELMO1	9844	broad.mit.edu	37	7	37156893	37156893	+	Intron	SNP	G	C	C			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ENTPD5	957	broad.mit.edu	37	14	74439444	74439444	+	Intron	SNP	C	G	G			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EP400	57634	broad.mit.edu	37	12	132498035	132498035	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPHA6	285220	broad.mit.edu	37	3	97439124	97439124	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPN1	29924	broad.mit.edu	37	19	56204360	56204360	+	Missense_Mutation	SNP	T	G	G			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ERI1	90459	broad.mit.edu	37	8	8875944	8875944	+	Intron	SNP	A	C	C			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EYA4	2070	broad.mit.edu	37	6	133833824	133833824	+	Intron	SNP	T	C	C			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
F8	2157	broad.mit.edu	37	X	154137324	154137324	+	Intron	SNP	C	T	T			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM135B	51059	broad.mit.edu	37	8	139152544	139152544	+	Intron	SNP	C	A	A			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM155A	728215	broad.mit.edu	37	13	108104551	108104551	+	Intron	SNP	C	T	T			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM163A	148753	broad.mit.edu	37	1	179727440	179727440	+	Intron	SNP	G	T	T			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM182B	728882	broad.mit.edu	37	20	25837975	25837975	+	Intron	SNP	G	T	T			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM19A1	407738	broad.mit.edu	37	3	68500976	68500976	+	Intron	SNP	C	A	A			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM3B	54097	broad.mit.edu	37	21	42695102	42695102	+	Intron	SNP	C	T	T			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM55D	54827	broad.mit.edu	37	11	114442052	114442052	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM75C1	441452	broad.mit.edu	37	9	90537780	90537780	+	Silent	SNP	C	T	T			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM9A	171482	broad.mit.edu	37	X	8766577	8766577	+	Intron	SNP	C	G	G			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBXO25	26260	broad.mit.edu	37	8	413123	413123	+	Silent	SNP	T	C	C			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FCRL1	115350	broad.mit.edu	37	1	157771907	157771907	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FGD3	89846	broad.mit.edu	37	9	95776272	95776272	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FGF13	2258	broad.mit.edu	37	X	137821488	137821488	+	5'UTR	SNP	C	A	A			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FIZ1	84922	broad.mit.edu	37	19	56109113	56109113	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLG	2312	broad.mit.edu	37	1	152283678	152283678	+	Silent	SNP	G	A	A			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLJ35024	401491	broad.mit.edu	37	9	2496138	2496138	+	Intron	SNP	C	A	A			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLT1	2321	broad.mit.edu	37	13	29002073	29002073	+	Intron	SNP	A	G	G			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FMN1	342184	broad.mit.edu	37	15	33359176	33359176	+	Frame_Shift_Del	DEL	C	-	-			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FOXL1	2300	broad.mit.edu	37	16	86612429	86612429	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FRAS1	80144	broad.mit.edu	37	4	79385327	79385327	+	Intron	SNP	G	T	T			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FRG1B	284802	broad.mit.edu	37	20	29649922	29649922	+	Intron	SNP	C	T	T			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FRMD1	79981	broad.mit.edu	37	6	168479609	168479609	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FRMPD1	22844	broad.mit.edu	37	9	37708556	37708556	+	Intron	SNP	G	T	T			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GAB3	139716	broad.mit.edu	37	X	153925387	153925387	+	Intron	SNP	T	C	C			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABBR2	9568	broad.mit.edu	37	9	101073563	101073563	+	Intron	SNP	C	T	T			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABRB3	2562	broad.mit.edu	37	15	26960380	26960380	+	Intron	SNP	C	A	A			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABRQ	55879	broad.mit.edu	37	X	151820167	151820167	+	Silent	SNP	C	A	A			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GALC	2581	broad.mit.edu	37	14	88421093	88421093	+	Intron	SNP	A	G	G			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GALNT12	79695	broad.mit.edu	37	9	101599398	101599398	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GALNTL1	57452	broad.mit.edu	37	14	69792676	69792676	+	Intron	SNP	C	T	T			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GALT	2592	broad.mit.edu	37	9	34648625	34648625	+	Intron	SNP	G	A	A			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GAS2	2620	broad.mit.edu	37	11	22777508	22777508	+	Intron	SNP	T	C	C			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GDF3	9573	broad.mit.edu	37	12	7843254	7843254	+	Silent	SNP	C	T	T			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GDI1	2664	broad.mit.edu	37	X	153668565	153668565	+	Intron	SNP	C	A	A			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GGCX	2677	broad.mit.edu	37	2	85777682	85777682	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GHITM	27069	broad.mit.edu	37	10	85908427	85908427	+	Intron	SNP	G	T	T			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GJD4	219770	broad.mit.edu	37	10	35896885	35896885	+	Silent	SNP	C	A	A			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GKAP1	80318	broad.mit.edu	37	9	86357514	86357514	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLI4	2738	broad.mit.edu	37	8	144351444	144351444	+	Intron	SNP	G	T	T			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GOLGB1	2804	broad.mit.edu	37	3	121388033	121388033	+	Intron	SNP	C	A	A			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPC5	2262	broad.mit.edu	37	13	92738195	92738195	+	Intron	SNP	C	A	A			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR112	139378	broad.mit.edu	37	X	135432048	135432048	+	Silent	SNP	T	C	C			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR112	139378	broad.mit.edu	37	X	135455366	135455366	+	Intron	SNP	G	T	T			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR116	221395	broad.mit.edu	37	6	46830550	46830550	+	Intron	SNP	C	T	T			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR149	344758	broad.mit.edu	37	3	154145563	154145563	+	Intron	SNP	C	A	A			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR89B	51463	broad.mit.edu	37	1	147400566	147400566	+	5'UTR	SNP	A	G	G			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRIA2	2891	broad.mit.edu	37	4	158281026	158281026	+	Intron	SNP	T	G	G			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRIK3	2899	broad.mit.edu	37	1	37319244	37319244	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRIN2B	2904	broad.mit.edu	37	12	13717204	13717204	+	Silent	SNP	G	T	T			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRXCR1	389207	broad.mit.edu	37	4	42895749	42895749	+	Intron	SNP	G	T	T			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GUCY1B3	2983	broad.mit.edu	37	4	156727536	156727536	+	Splice_Site	SNP	A	T	T			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GUSBP1	728411	broad.mit.edu	37	5	21522131	21522131	+	Intron	SNP	G	A	A	rs75012827	by1000genomes	TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HDGFL1	154150	broad.mit.edu	37	6	22569722	22569722	+	5'UTR	SNP	G	A	A	rs79706674	by1000genomes	TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HDGFL1	154150	broad.mit.edu	37	6	22569903	22569903	+	Silent	SNP	C	T	T			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HECW1	23072	broad.mit.edu	37	7	43436498	43436498	+	Intron	SNP	G	C	C			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HEXA	3073	broad.mit.edu	37	15	72641662	72641662	+	Intron	SNP	A	T	T			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HGF	3082	broad.mit.edu	37	7	81331856	81331856	+	3'UTR	SNP	G	T	T			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HOOK3	84376	broad.mit.edu	37	8	42821773	42821773	+	Intron	SNP	C	T	T			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HS6ST1	9394	broad.mit.edu	37	2	129026475	129026475	+	Intron	SNP	C	A	A			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HSD17B7	51478	broad.mit.edu	37	1	162773268	162773268	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HTR1E	3354	broad.mit.edu	37	6	87726013	87726013	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HTR5A	3361	broad.mit.edu	37	7	154876127	154876127	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HYDIN	54768	broad.mit.edu	37	16	70927000	70927000	+	Intron	SNP	G	T	T			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IARS	3376	broad.mit.edu	37	9	95015646	95015646	+	Missense_Mutation	SNP	T	G	G			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IFNA16	3449	broad.mit.edu	37	9	21217301	21217301	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IGDCC3	9543	broad.mit.edu	37	15	65667437	65667437	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IKBIP	121457	broad.mit.edu	37	12	99019977	99019977	+	Intron	SNP	C	G	G			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL9R	3581	broad.mit.edu	37	X	155233310	155233310	+	Intron	SNP	A	T	T			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
INHBA	3624	broad.mit.edu	37	7	41729684	41729684	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
INPP4B	8821	broad.mit.edu	37	4	143235749	143235749	+	Intron	SNP	C	A	A			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IRAK3	11213	broad.mit.edu	37	12	66603295	66603295	+	Frame_Shift_Del	DEL	T	-	-			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ISL1	3670	broad.mit.edu	37	5	50683572	50683572	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGAD	3681	broad.mit.edu	37	16	31435380	31435380	+	Intron	SNP	C	T	T			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGB3	3690	broad.mit.edu	37	17	45370108	45370108	+	Intron	SNP	A	T	T	rs78169196		TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGB5	3693	broad.mit.edu	37	3	124527714	124527714	+	Intron	SNP	T	A	A			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITPR1	3708	broad.mit.edu	37	3	4774739	4774739	+	Intron	SNP	A	G	G			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITPR2	3709	broad.mit.edu	37	12	26818887	26818887	+	Nonsense_Mutation	SNP	G	A	A			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IWS1	55677	broad.mit.edu	37	2	128255738	128255738	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNAB1	7881	broad.mit.edu	37	3	156241788	156241788	+	Intron	SNP	T	A	A			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNH7	90134	broad.mit.edu	37	2	163241032	163241032	+	Intron	SNP	G	A	A			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNJ3	3760	broad.mit.edu	37	2	155566162	155566162	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNMA1	3778	broad.mit.edu	37	10	79306061	79306061	+	Intron	SNP	C	A	A			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNN4	3783	broad.mit.edu	37	19	44273291	44273291	+	Intron	SNP	G	C	C			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCTD19	146212	broad.mit.edu	37	16	67354623	67354623	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KEAP1	9817	broad.mit.edu	37	19	10602799	10602799	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA0664P3	100132341	broad.mit.edu	37	16	31716766	31716766	+	RNA	SNP	A	C	C			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1530	57654	broad.mit.edu	37	4	1374651	1374651	+	Intron	SNP	G	T	T			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1539	80256	broad.mit.edu	37	9	35107982	35107982	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1614	57710	broad.mit.edu	37	1	180886045	180886045	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1632	57724	broad.mit.edu	37	18	43496612	43496612	+	Intron	SNP	T	A	A			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1804	84451	broad.mit.edu	37	1	233498129	233498129	+	Intron	SNP	G	A	A			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1984	84960	broad.mit.edu	37	9	139697638	139697638	+	Intron	SNP	G	A	A			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF5A	3798	broad.mit.edu	37	12	57962632	57962632	+	Intron	SNP	C	A	A			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIR3DX1	90011	broad.mit.edu	37	19	55053664	55053664	+	Intron	SNP	G	T	T			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLHL6	89857	broad.mit.edu	37	3	183210160	183210160	+	Intron	SNP	G	T	T			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KPNB1	3837	broad.mit.edu	37	17	45757786	45757786	+	Intron	SNP	G	C	C			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRT13	3860	broad.mit.edu	37	17	39660094	39660094	+	Intron	SNP	C	T	T			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KSR2	283455	broad.mit.edu	37	12	117904337	117904337	+	3'UTR	SNP	T	C	C			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAIR1	3903	broad.mit.edu	37	19	54876603	54876603	+	5'UTR	SNP	G	T	T			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMA2	3908	broad.mit.edu	37	6	129250509	129250509	+	Intron	SNP	A	T	T			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMA3	3909	broad.mit.edu	37	18	21523683	21523683	+	Intron	SNP	G	T	T			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMB4	22798	broad.mit.edu	37	7	107728176	107728177	+	Intron	INS	-	C	C	rs149843198	by1000genomes	TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMP3	27074	broad.mit.edu	37	3	182853786	182853786	+	Intron	SNP	C	T	T			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LASS2	29956	broad.mit.edu	37	1	150938672	150938673	+	Frame_Shift_Ins	INS	-	A	A			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LEKR1	389170	broad.mit.edu	37	3	156729134	156729134	+	Intron	SNP	A	G	G			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LHCGR	3973	broad.mit.edu	37	2	48915565	48915565	+	Silent	SNP	G	T	T			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LMAN1L	79748	broad.mit.edu	37	15	75117695	75117695	+	Intron	SNP	A	T	T			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LNP1	348801	broad.mit.edu	37	3	100174529	100174530	+	Intron	DNP	CA	TC	TC			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC100133308	100133308	broad.mit.edu	37	10	45602403	45602403	+	RNA	SNP	C	A	A			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC145837	145837	broad.mit.edu	37	15	69761210	69761210	+	Intron	SNP	C	G	G			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC285501	285501	broad.mit.edu	37	4	178911644	178911644	+	RNA	DEL	A	-	-			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC342346	342346	broad.mit.edu	37	16	4613034	4613034	+	Intron	SNP	C	T	T			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC647946	647946	broad.mit.edu	37	18	36915602	36915602	+	Intron	SNP	A	G	G			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC651250	651250	broad.mit.edu	37	17	66126294	66126294	+	RNA	SNP	A	G	G			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC654342	654342	broad.mit.edu	37	2	91821200	91821200	+	Intron	SNP	C	T	T			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LPHN2	23266	broad.mit.edu	37	1	82409459	82409459	+	Intron	SNP	C	T	T			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP1B	53353	broad.mit.edu	37	2	141202236	141202236	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC20	55222	broad.mit.edu	37	10	72061136	72061136	+	Nonsense_Mutation	SNP	C	A	A			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC7	57554	broad.mit.edu	37	1	70478656	70478656	+	Splice_Site	SNP	G	C	C			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRK2	120892	broad.mit.edu	37	12	40761466	40761466	+	Missense_Mutation	SNP	G	T	T	rs150062967		TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRTM4	80059	broad.mit.edu	37	2	77563483	77563483	+	Intron	SNP	C	G	G			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LTA4H	4048	broad.mit.edu	37	12	96431147	96431147	+	5'Flank	SNP	C	G	G			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LTBP2	4053	broad.mit.edu	37	14	75022176	75022176	+	Intron	SNP	C	T	T			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LY86	9450	broad.mit.edu	37	6	6652918	6652918	+	Intron	SNP	C	T	T			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAGEA10	4109	broad.mit.edu	37	X	151303501	151303501	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAGEA12	4111	broad.mit.edu	37	X	151896836	151896836	+	Intron	SNP	C	T	T			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAGEA3	4102	broad.mit.edu	37	X	151935513	151935513	+	Silent	SNP	C	T	T			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MASP1	5648	broad.mit.edu	37	3	186967964	186967964	+	Intron	SNP	C	A	A			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MED4	29079	broad.mit.edu	37	13	48669321	48669321	+	5'Flank	SNP	A	T	T			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MGP	4256	broad.mit.edu	37	12	15034990	15034990	+	3'UTR	SNP	T	C	C			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MIA3	375056	broad.mit.edu	37	1	222805568	222805568	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MICB	4277	broad.mit.edu	37	6	31465119	31465119	+	5'Flank	SNP	G	T	T			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MIR890	100126303	broad.mit.edu	37	X	145078046	145078046	+	5'Flank	SNP	C	A	A			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MIR891B	100126304	broad.mit.edu	37	X	145082576	145082576	+	RNA	SNP	T	C	C			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MMP9	4318	broad.mit.edu	37	20	44639914	44639914	+	Missense_Mutation	SNP	A	G	G	rs144229833		TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MPP1	4354	broad.mit.edu	37	X	154007590	154007590	+	Silent	SNP	G	T	T			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MRAS	22808	broad.mit.edu	37	3	138123436	138123436	+	3'UTR	SNP	G	T	T			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MRO	83876	broad.mit.edu	37	18	48325711	48325711	+	Missense_Mutation	SNP	A	C	C			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MRPS15	64960	broad.mit.edu	37	1	36921756	36921756	+	Intron	SNP	G	A	A			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MRRF	92399	broad.mit.edu	37	9	125033404	125033404	+	Intron	DEL	C	-	-			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MSR1	4481	broad.mit.edu	37	8	15987466	15987466	+	Intron	SNP	G	T	T			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTMR8	55613	broad.mit.edu	37	X	63444978	63444978	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTUS2	23281	broad.mit.edu	37	13	30062326	30062326	+	Intron	SNP	G	A	A			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC16	94025	broad.mit.edu	37	19	9076923	9076923	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH13	8735	broad.mit.edu	37	17	10209812	10209812	+	Silent	SNP	C	T	T			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH6	4624	broad.mit.edu	37	14	23858085	23858085	+	Silent	SNP	C	T	T			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH8	4626	broad.mit.edu	37	17	10303514	10303514	+	Intron	SNP	C	T	T			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH8	4626	broad.mit.edu	37	17	10309502	10309502	+	Intron	SNP	A	G	G			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO16	23026	broad.mit.edu	37	13	109507808	109507808	+	Silent	SNP	T	C	C			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO18A	399687	broad.mit.edu	37	17	27411201	27411201	+	Intron	SNP	T	A	A			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO18A	399687	broad.mit.edu	37	17	27438708	27438708	+	Intron	SNP	C	A	A			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO1D	4642	broad.mit.edu	37	17	30932130	30932130	+	Nonsense_Mutation	SNP	C	A	A			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO5B	4645	broad.mit.edu	37	18	47489408	47489408	+	Intron	SNP	A	G	G			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYRIP	25924	broad.mit.edu	37	3	40204175	40204175	+	Intron	SNP	C	G	G			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
N4BP2	55728	broad.mit.edu	37	4	40104921	40104921	+	Intron	SNP	G	T	T			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NAALADL2	254827	broad.mit.edu	37	3	175520526	175520527	+	Intron	INS	-	T	T	rs147807605	by1000genomes	TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NAP1L2	4674	broad.mit.edu	37	X	72433353	72433353	+	Nonsense_Mutation	SNP	C	A	A			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NAV3	89795	broad.mit.edu	37	12	78400511	78400512	+	Frame_Shift_Ins	INS	-	C	C			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NAV3	89795	broad.mit.edu	37	12	78510532	78510532	+	Intron	SNP	C	A	A			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBEA	26960	broad.mit.edu	37	13	36220080	36220080	+	Intron	SNP	G	C	C			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCAPD2	9918	broad.mit.edu	37	12	6626381	6626381	+	Intron	SNP	A	G	G			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NDUFS2	4720	broad.mit.edu	37	1	161182313	161182313	+	Intron	SNP	G	C	C			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NETO2	81831	broad.mit.edu	37	16	47156936	47156936	+	Intron	SNP	T	A	A			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NEUROD4	58158	broad.mit.edu	37	12	55420509	55420509	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NEUROD6	63974	broad.mit.edu	37	7	31378149	31378149	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NFATC2	4773	broad.mit.edu	37	20	50091948	50091948	+	Intron	SNP	G	A	A			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NHP2L1	4809	broad.mit.edu	37	22	42076369	42076369	+	Splice_Site	SNP	C	G	G			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NINL	22981	broad.mit.edu	37	20	25485523	25485523	+	Splice_Site	SNP	C	A	A			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLRP14	338323	broad.mit.edu	37	11	7067771	7067771	+	Intron	SNP	T	A	A			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLRP6	171389	broad.mit.edu	37	11	282701	282701	+	Splice_Site	SNP	G	T	T			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NNMT	4837	broad.mit.edu	37	11	114182962	114182962	+	Silent	SNP	A	T	T			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NOS1	4842	broad.mit.edu	37	12	117718551	117718552	+	Frame_Shift_Ins	INS	-	G	G			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NR5A2	2494	broad.mit.edu	37	1	200017310	200017310	+	Silent	SNP	C	T	T	rs151039307		TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRP2	8828	broad.mit.edu	37	2	206590698	206590699	+	Missense_Mutation	DNP	TG	CT	CT			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRXN1	9378	broad.mit.edu	37	2	50724388	50724388	+	Intron	SNP	T	G	G			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRXN1	9378	broad.mit.edu	37	2	50755671	50755671	+	Intron	SNP	C	A	A			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NT5C3	51251	broad.mit.edu	37	7	33057180	33057180	+	Silent	SNP	T	C	C			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NT5M	56953	broad.mit.edu	37	17	17227981	17227981	+	Intron	SNP	C	G	G			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NTF3	4908	broad.mit.edu	37	12	5585594	5585594	+	Intron	SNP	A	T	T			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NTM	50863	broad.mit.edu	37	11	132124490	132124490	+	Intron	SNP	G	T	T			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NUDCD3	23386	broad.mit.edu	37	7	44501479	44501479	+	Intron	SNP	T	A	A			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NUP35	129401	broad.mit.edu	37	2	184022190	184022190	+	Silent	SNP	T	G	G			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OBSCN	84033	broad.mit.edu	37	1	228509046	228509046	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ODZ4	26011	broad.mit.edu	37	11	78413642	78413642	+	Intron	SNP	G	C	C			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OPN1LW	5956	broad.mit.edu	37	X	153421993	153421993	+	Silent	SNP	C	A	A			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OPN3	23596	broad.mit.edu	37	1	241767797	241767797	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR10Q1	219960	broad.mit.edu	37	11	57995621	57995621	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR11L1	391189	broad.mit.edu	37	1	248004584	248004585	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2L13	284521	broad.mit.edu	37	1	248138043	248138044	+	Intron	DNP	CA	AT	AT			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4K17	390436	broad.mit.edu	37	14	20586108	20586108	+	Silent	SNP	C	A	A			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR5A2	219981	broad.mit.edu	37	11	59189969	59189969	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR5D14	219436	broad.mit.edu	37	11	55563066	55563066	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR5D14	219436	broad.mit.edu	37	11	55563948	55563948	+	Nonsense_Mutation	SNP	T	G	G			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR5D18	219438	broad.mit.edu	37	11	55587309	55587309	+	Silent	SNP	C	G	G			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR5J2	282775	broad.mit.edu	37	11	55944493	55944493	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR5L2	26338	broad.mit.edu	37	11	55595206	55595206	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR5M11	219487	broad.mit.edu	37	11	56310716	56310716	+	Silent	SNP	G	T	T			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR8D2	283160	broad.mit.edu	37	11	124189502	124189502	+	Silent	SNP	G	A	A			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ORC2L	4999	broad.mit.edu	37	2	201800352	201800352	+	Intron	SNP	T	G	G			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ORM1	5004	broad.mit.edu	37	9	117085901	117085901	+	Intron	SNP	T	A	A			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OTUD7A	161725	broad.mit.edu	37	15	32060266	32060266	+	Intron	SNP	C	G	G			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OTUD7B	56957	broad.mit.edu	37	1	149943154	149943154	+	Silent	SNP	G	A	A			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PADI3	51702	broad.mit.edu	37	1	17607145	17607145	+	Intron	SNP	C	T	T			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PANX1	24145	broad.mit.edu	37	11	93886744	93886744	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAPPA2	60676	broad.mit.edu	37	1	176708998	176708998	+	Intron	SNP	A	G	G			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAPPA2	60676	broad.mit.edu	37	1	176766050	176766050	+	Intron	SNP	T	A	A			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PARK2	5071	broad.mit.edu	37	6	162720292	162720292	+	Intron	SNP	C	A	A			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PARP12	64761	broad.mit.edu	37	7	139741316	139741316	+	Intron	SNP	C	A	A			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PASD1	139135	broad.mit.edu	37	X	150842789	150842789	+	Intron	SNP	G	T	T			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PATL1	219988	broad.mit.edu	37	11	59419010	59419010	+	Intron	SNP	C	A	A			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH15	65217	broad.mit.edu	37	10	55581630	55581630	+	Silent	SNP	A	C	C			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHB17	54661	broad.mit.edu	37	5	140537819	140537819	+	3'UTR	SNP	C	A	A			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCLO	27445	broad.mit.edu	37	7	82585848	82585848	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCNX	22990	broad.mit.edu	37	14	71429094	71429095	+	Intron	DNP	TG	AT	AT			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDCD7	10081	broad.mit.edu	37	15	65421542	65421542	+	Intron	SNP	T	C	C			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE4DIP	9659	broad.mit.edu	37	1	144857562	144857562	+	Intron	SNP	T	A	A			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE4DIP	9659	broad.mit.edu	37	1	144916439	144916439	+	Intron	SNP	C	T	T			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE4DIP	9659	broad.mit.edu	37	1	145022584	145022584	+	Intron	SNP	G	A	A	rs61811001		TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDP1	54704	broad.mit.edu	37	8	94935198	94935198	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PEX16	9409	broad.mit.edu	37	11	45937961	45937961	+	Intron	SNP	C	T	T			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PEX3	8504	broad.mit.edu	37	6	143772021	143772021	+	5'UTR	SNP	G	C	C			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PHKA2	5256	broad.mit.edu	37	X	18926946	18926946	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PID1	55022	broad.mit.edu	37	2	230020504	230020504	+	Intron	SNP	G	A	A			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIP4K2B	8396	broad.mit.edu	37	17	36934387	36934387	+	Intron	SNP	G	T	T			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PKHD1	5314	broad.mit.edu	37	6	51774038	51774038	+	Intron	SNP	G	A	A			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLCB1	23236	broad.mit.edu	37	20	8745730	8745730	+	Intron	SNP	T	C	C			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLCL2	23228	broad.mit.edu	37	3	17051510	17051510	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLEKHA5	54477	broad.mit.edu	37	12	19460990	19460990	+	Intron	SNP	G	T	T			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLEKHA6	22874	broad.mit.edu	37	1	204236792	204236792	+	Intron	SNP	C	T	T			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLEKHH2	130271	broad.mit.edu	37	2	43986227	43986227	+	Intron	SNP	A	G	G			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLXNA4	91584	broad.mit.edu	37	7	131864373	131864373	+	Intron	SNP	A	T	T			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PNCK	139728	broad.mit.edu	37	X	152936415	152936415	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PNCK	139728	broad.mit.edu	37	X	152936707	152936707	+	Intron	SNP	G	A	A			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PNPLA7	375775	broad.mit.edu	37	9	140358756	140358756	+	Intron	SNP	T	C	C			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POPDC3	64208	broad.mit.edu	37	6	105607676	105607676	+	Silent	SNP	A	G	G			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POU3F2	5454	broad.mit.edu	37	6	99283514	99283514	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPAT	5471	broad.mit.edu	37	4	57301533	57301533	+	Silent	SNP	G	C	C			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPAT	5471	broad.mit.edu	37	4	57301535	57301535	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPFIBP1	8496	broad.mit.edu	37	12	27808044	27808044	+	Intron	SNP	A	C	C			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPP1R12B	4660	broad.mit.edu	37	1	202509228	202509228	+	Intron	SNP	G	T	T			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPP2R5D	5528	broad.mit.edu	37	6	42976964	42976964	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPP3CB	5532	broad.mit.edu	37	10	75238254	75238254	+	Intron	SNP	T	G	G			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRAMEF5	343068	broad.mit.edu	37	1	13051786	13051786	+	Intron	SNP	A	C	C			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRAME	23532	broad.mit.edu	37	22	22892423	22892423	+	Silent	SNP	G	T	T			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRCP	5547	broad.mit.edu	37	11	82597477	82597477	+	Intron	SNP	C	A	A			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PREX2	80243	broad.mit.edu	37	8	69015124	69015124	+	Intron	SNP	G	C	C			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRIM2	5558	broad.mit.edu	37	6	57512398	57512398	+	Intron	SNP	A	G	G			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRKACB	5567	broad.mit.edu	37	1	84668410	84668410	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRKAR2A	5576	broad.mit.edu	37	3	48810501	48810501	+	Missense_Mutation	SNP	G	A	A	rs147886817		TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRKCE	5581	broad.mit.edu	37	2	46069896	46069896	+	Intron	SNP	T	C	C			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRKG1	5592	broad.mit.edu	37	10	53798767	53798767	+	Intron	SNP	G	C	C			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRMT6	55170	broad.mit.edu	37	1	107600087	107600087	+	Silent	SNP	G	T	T			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PROM1	8842	broad.mit.edu	37	4	16037543	16037543	+	Intron	SNP	A	C	C			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRUNE2	158471	broad.mit.edu	37	9	79326184	79326184	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSG5	5673	broad.mit.edu	37	19	43680281	43680281	+	Silent	SNP	G	A	A			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSG6	5675	broad.mit.edu	37	19	43519579	43519579	+	Intron	SNP	T	G	G			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSG8	440533	broad.mit.edu	37	19	43261591	43261591	+	Intron	SNP	G	T	T			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSMD13	5719	broad.mit.edu	37	11	251788	251788	+	Intron	SNP	C	T	T			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSME2	5721	broad.mit.edu	37	14	24615569	24615569	+	Intron	SNP	T	C	C			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTCD1	26024	broad.mit.edu	37	7	99042396	99042396	+	Intron	SNP	T	C	C			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTER	9317	broad.mit.edu	37	10	16526695	16526695	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPLAD1	51495	broad.mit.edu	37	15	65847093	65847093	+	Intron	SNP	A	G	G			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRH	5794	broad.mit.edu	37	19	55708852	55708852	+	Intron	SNP	C	A	A			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PUF60	22827	broad.mit.edu	37	8	144898802	144898802	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PYROXD1	79912	broad.mit.edu	37	12	21619598	21619598	+	Intron	SNP	T	A	A			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAB11FIP2	22841	broad.mit.edu	37	10	119805399	119805399	+	Silent	SNP	C	A	A			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RABGAP1	23637	broad.mit.edu	37	9	125791955	125791955	+	Intron	SNP	G	T	T			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAPGEF4	11069	broad.mit.edu	37	2	173662380	173662380	+	Intron	SNP	T	C	C			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RASA1	5921	broad.mit.edu	37	5	86633771	86633771	+	Intron	SNP	T	C	C			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RASGRF2	5924	broad.mit.edu	37	5	80376547	80376547	+	Missense_Mutation	SNP	A	C	C			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RBMS3	27303	broad.mit.edu	37	3	29938862	29938862	+	Intron	SNP	G	C	C			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RBP2	5948	broad.mit.edu	37	3	139180964	139180964	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RCAN2	10231	broad.mit.edu	37	6	46272997	46272997	+	Intron	SNP	G	C	C			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
REEP1	65055	broad.mit.edu	37	2	86491201	86491201	+	Intron	SNP	G	C	C			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
REG1P	5969	broad.mit.edu	37	2	79364148	79364148	+	Intron	SNP	A	G	G			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
REV3L	5980	broad.mit.edu	37	6	111701102	111701102	+	Intron	SNP	T	C	C			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RGS22	26166	broad.mit.edu	37	8	101078438	101078438	+	Silent	SNP	T	C	C			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RHPN2	85415	broad.mit.edu	37	19	33517420	33517420	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RIF1	55183	broad.mit.edu	37	2	152320281	152320281	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RIMBP2	23504	broad.mit.edu	37	12	130941203	130941203	+	Nonsense_Mutation	SNP	C	A	A			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RMND5A	64795	broad.mit.edu	37	2	87410244	87410244	+	Intron	SNP	C	A	A			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ROR1	4919	broad.mit.edu	37	1	64515390	64515390	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPN2	6185	broad.mit.edu	37	20	35827289	35827289	+	Intron	SNP	G	A	A			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RSPO4	343637	broad.mit.edu	37	20	948637	948637	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RXRG	6258	broad.mit.edu	37	1	165398014	165398014	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR1	6261	broad.mit.edu	37	19	38959828	38959828	+	Intron	SNP	T	A	A			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR1	6261	broad.mit.edu	37	19	38959830	38959830	+	Intron	SNP	T	C	C			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR2	6262	broad.mit.edu	37	1	237837542	237837542	+	Intron	SNP	T	A	A			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR2	6262	broad.mit.edu	37	1	237947057	237947057	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR3	6263	broad.mit.edu	37	15	33905645	33905645	+	Intron	SNP	G	T	T			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SAAL1	113174	broad.mit.edu	37	11	18112007	18112007	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCAND3	114821	broad.mit.edu	37	6	28543125	28543125	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCN9A	6335	broad.mit.edu	37	2	167208529	167208529	+	Intron	SNP	T	C	C			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SDHAP1	255812	broad.mit.edu	37	3	195701310	195701311	+	Frame_Shift_Ins	INS	-	AA	AA			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEC23B	10483	broad.mit.edu	37	20	18516246	18516246	+	Intron	SNP	A	G	G			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEC63	11231	broad.mit.edu	37	6	108227934	108227934	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEL1L2	80343	broad.mit.edu	37	20	13868569	13868569	+	Intron	SNP	G	C	C			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SELL	6402	broad.mit.edu	37	1	169677568	169677568	+	Silent	SNP	G	C	C			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SELL	6402	broad.mit.edu	37	1	169677935	169677935	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEMA3A	10371	broad.mit.edu	37	7	83823799	83823799	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEMA6D	80031	broad.mit.edu	37	15	47873635	47873635	+	Intron	SNP	G	T	T			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEMA6D	80031	broad.mit.edu	37	15	48051933	48051933	+	Intron	SNP	G	T	T			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEMG1	6406	broad.mit.edu	37	20	43836133	43836133	+	Silent	SNP	T	C	C			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SERPINA11	256394	broad.mit.edu	37	14	94914752	94914753	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SERPINA6	866	broad.mit.edu	37	14	94770593	94770593	+	3'UTR	SNP	G	T	T			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEZ6L	23544	broad.mit.edu	37	22	26618487	26618487	+	Intron	SNP	G	A	A			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SFRS15	57466	broad.mit.edu	37	21	33073489	33073489	+	Intron	SNP	A	G	G			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SGCZ	137868	broad.mit.edu	37	8	14303587	14303587	+	Intron	SNP	C	G	G			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SGSM1	129049	broad.mit.edu	37	22	25264768	25264768	+	Nonsense_Mutation	SNP	G	T	T			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SGTB	54557	broad.mit.edu	37	5	64976348	64976348	+	Silent	SNP	C	T	T			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SH3BP5L	80851	broad.mit.edu	37	1	249106452	249106452	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SHBG	6462	broad.mit.edu	37	17	7534281	7534281	+	Intron	SNP	C	T	T			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SHROOM3	57619	broad.mit.edu	37	4	77645880	77645880	+	Intron	SNP	A	G	G			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SIGLEC10	89790	broad.mit.edu	37	19	51914558	51914558	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SIGLEC12	89858	broad.mit.edu	37	19	52002345	52002345	+	Intron	SNP	G	T	T			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC16A4	9122	broad.mit.edu	37	1	110925346	110925346	+	Intron	SNP	A	G	G			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC17A1	6568	broad.mit.edu	37	6	25820182	25820182	+	Intron	SNP	A	T	T			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC22A15	55356	broad.mit.edu	37	1	116563540	116563540	+	Intron	SNP	G	C	C			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC26A7	115111	broad.mit.edu	37	8	92407523	92407523	+	3'UTR	SNP	C	A	A			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC40A1	30061	broad.mit.edu	37	2	190428759	190428759	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC5A5	6528	broad.mit.edu	37	19	17985241	17985241	+	Intron	SNP	C	T	T			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC5A8	160728	broad.mit.edu	37	12	101577946	101577946	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC5A9	200010	broad.mit.edu	37	1	48696360	48696360	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC6A12	6539	broad.mit.edu	37	12	311924	311924	+	Missense_Mutation	SNP	T	C	C	rs144464466		TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC6A2	6530	broad.mit.edu	37	16	55736430	55736430	+	3'UTR	SNP	T	A	A			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLIT3	6586	broad.mit.edu	37	5	168244331	168244331	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLITRK3	22865	broad.mit.edu	37	3	164907125	164907125	+	Silent	SNP	T	C	C			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNORD115-44	100033818	broad.mit.edu	37	15	25495855	25495855	+	5'Flank	SNP	T	C	C			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNX29	92017	broad.mit.edu	37	16	12347544	12347544	+	Intron	SNP	C	G	G			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SORCS1	114815	broad.mit.edu	37	10	108531574	108531574	+	Intron	SNP	C	A	A			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPAG17	200162	broad.mit.edu	37	1	118693248	118693248	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPAM1	6677	broad.mit.edu	37	7	123599760	123599760	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPEG	10290	broad.mit.edu	37	2	220354245	220354245	+	Silent	SNP	C	G	G			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPRYD5	84767	broad.mit.edu	37	11	55653094	55653094	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYNE1	23345	broad.mit.edu	37	6	152690334	152690334	+	Intron	SNP	G	A	A			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAF1A	9015	broad.mit.edu	37	1	222742739	222742739	+	Intron	SNP	T	C	C			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TANC2	26115	broad.mit.edu	37	17	61417772	61417772	+	Intron	SNP	G	C	C	rs149834031	by1000genomes	TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBC1D13	54662	broad.mit.edu	37	9	131568117	131568117	+	Intron	DEL	C	-	-			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TFCP2L1	29842	broad.mit.edu	37	2	121981887	121981887	+	3'UTR	SNP	G	T	T			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TGFBR2	7048	broad.mit.edu	37	3	30686295	30686295	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
THBS4	7060	broad.mit.edu	37	5	79368108	79368108	+	Silent	SNP	A	G	G			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
THSD7A	221981	broad.mit.edu	37	7	11422124	11422124	+	Intron	SNP	G	C	C			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TLL2	7093	broad.mit.edu	37	10	98173110	98173110	+	Intron	SNP	A	T	T			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TLN2	83660	broad.mit.edu	37	15	63040641	63040641	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEFF1	8577	broad.mit.edu	37	9	103207531	103207531	+	Intron	SNP	G	T	T			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM116	89894	broad.mit.edu	37	12	112369379	112369390	+	3'UTR	DEL	TTAGCGTAGAAT	-	-			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM175	84286	broad.mit.edu	37	4	949544	949544	+	Silent	SNP	C	A	A			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM190	147744	broad.mit.edu	37	19	55889560	55889560	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM5	10329	broad.mit.edu	37	12	64173625	64173626	+	5'Flank	DNP	CC	AA	AA			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMLHE	55217	broad.mit.edu	37	X	154741186	154741186	+	Intron	SNP	A	T	T			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNC	3371	broad.mit.edu	37	9	117848545	117848545	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNN	63923	broad.mit.edu	37	1	175104954	175104954	+	Intron	SNP	G	C	C			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TP53	7157	broad.mit.edu	37	17	7579582	7579583	+	Frame_Shift_Ins	INS	-	A	A	rs121912661		TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPTE2	93492	broad.mit.edu	37	13	20008691	20008691	+	Intron	SNP	C	T	T			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPTE2	93492	broad.mit.edu	37	13	20039271	20039271	+	Intron	SNP	C	G	G			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRAF3	7187	broad.mit.edu	37	14	103342916	103342916	+	Intron	SNP	C	G	G			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRAPPC1	58485	broad.mit.edu	37	17	7834428	7834428	+	Silent	SNP	T	C	C			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIM10	10107	broad.mit.edu	37	6	30126068	30126068	+	Intron	SNP	A	G	G			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIM42	287015	broad.mit.edu	37	3	140406869	140406869	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIM43	129868	broad.mit.edu	37	2	96261979	96261979	+	Silent	SNP	C	A	A			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIM54	57159	broad.mit.edu	37	2	27521582	27521582	+	Missense_Mutation	SNP	G	A	A	rs140219939		TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIO	7204	broad.mit.edu	37	5	14266586	14266586	+	Intron	SNP	A	T	T			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPA1	8989	broad.mit.edu	37	8	72975681	72975681	+	Intron	SNP	G	T	T			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRRAP	8295	broad.mit.edu	37	7	98602681	98602681	+	Intron	SNP	C	A	A			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TSSC1	7260	broad.mit.edu	37	2	3353478	3353478	+	Intron	SNP	G	A	A			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTC17	55761	broad.mit.edu	37	11	43469378	43469378	+	Intron	SNP	A	G	G			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTLL9	164395	broad.mit.edu	37	20	30497669	30497669	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179409131	179409131	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179414451	179414451	+	Silent	SNP	G	T	T			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179658062	179658062	+	Intron	SNP	G	T	T			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TULP3	7289	broad.mit.edu	37	12	3043522	3043522	+	Intron	SNP	G	T	T			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBE3C	9690	broad.mit.edu	37	7	156990438	156990438	+	Intron	SNP	G	C	C			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBOX5	22888	broad.mit.edu	37	20	3095974	3095974	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBR2	23304	broad.mit.edu	37	6	42625700	42625700	+	Intron	SNP	G	C	C			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBR2	23304	broad.mit.edu	37	6	42641513	42641513	+	Intron	SNP	C	T	T			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBXN7	26043	broad.mit.edu	37	3	196098957	196098957	+	Intron	SNP	T	A	A			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UNC13A	23025	broad.mit.edu	37	19	17785516	17785516	+	Silent	SNP	C	G	G			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UNC5D	137970	broad.mit.edu	37	8	35616848	35616848	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UNC80	285175	broad.mit.edu	37	2	210840978	210840978	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UPF2	26019	broad.mit.edu	37	10	12043820	12043820	+	Silent	SNP	T	A	A			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP19	10869	broad.mit.edu	37	3	49153944	49153944	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP24	23358	broad.mit.edu	37	1	55563844	55563844	+	Intron	SNP	C	G	G			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP25	29761	broad.mit.edu	37	21	17203979	17203979	+	Intron	SNP	A	C	C			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UTRN	7402	broad.mit.edu	37	6	144811183	144811183	+	Intron	SNP	C	A	A			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	120414913	120414913	+	IGR	SNP	C	A	A			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	132543610	132543610	+	IGR	SNP	G	A	A			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	42652023	42652023	+	IGR	SNP	G	T	T			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	42667959	42667959	+	IGR	SNP	G	T	T	rs150010848	by1000genomes	TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	43202043	43202043	+	IGR	SNP	A	T	T			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	5174708	5174708	+	IGR	SNP	C	A	A			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	60760977	60760977	+	IGR	SNP	T	C	C			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	7715938	7715938	+	IGR	SNP	C	T	T			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	82009603	82009603	+	IGR	SNP	G	C	C			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	85759633	85759633	+	IGR	SNP	C	A	A			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	115932345	115932345	+	IGR	SNP	G	T	T			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	34775368	34775368	+	IGR	DEL	C	-	-			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	5113949	5113949	+	IGR	SNP	T	A	A			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	55070239	55070239	+	IGR	SNP	C	A	A			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	55093551	55093551	+	IGR	SNP	G	T	T			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	55198210	55198210	+	IGR	SNP	A	G	G			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	55258905	55258905	+	IGR	SNP	G	T	T			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	87763043	87763043	+	IGR	SNP	A	G	G			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	88165784	88165784	+	IGR	SNP	T	A	A			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	89498220	89498220	+	IGR	SNP	C	A	A			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	95296662	95296662	+	IGR	SNP	C	G	G			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	121544996	121544996	+	IGR	SNP	G	T	T			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	128816581	128816581	+	IGR	SNP	G	T	T			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	128825252	128825252	+	IGR	SNP	C	A	A			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	16552977	16552977	+	IGR	SNP	C	A	A			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	23017709	23017709	+	IGR	SNP	G	T	T			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	38600760	38600761	+	IGR	DNP	GG	TT	TT			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	3992393	3992393	+	IGR	SNP	T	A	A			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	55497354	55497354	+	IGR	SNP	G	T	T			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	66431228	66431228	+	IGR	SNP	G	T	T			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	68463276	68463276	+	IGR	SNP	C	G	G			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	9659219	9659219	+	IGR	SNP	C	G	G			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	108584497	108584497	+	IGR	SNP	G	C	C			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	112713107	112713107	+	IGR	SNP	G	T	T			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	26810768	26810768	+	IGR	SNP	A	G	G			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	29566218	29566218	+	IGR	SNP	C	A	A			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	68482449	68482449	+	IGR	SNP	T	C	C			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	75717574	75717574	+	IGR	SNP	G	C	C			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	90644678	90644678	+	IGR	SNP	C	T	T			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	20228433	20228433	+	IGR	SNP	T	A	A			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	32357143	32357143	+	IGR	SNP	T	G	G			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	39684654	39684654	+	IGR	DEL	A	-	-			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	39685121	39685121	+	IGR	SNP	G	C	C			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	59207789	59207789	+	IGR	SNP	T	C	C			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	66368070	66368070	+	IGR	SNP	G	T	T			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	20482190	20482190	+	IGR	SNP	C	G	G			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	17046462	17046462	+	IGR	SNP	G	T	T			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	32392830	32392830	+	IGR	SNP	T	C	C	rs146777778	by1000genomes	TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	33391547	33391547	+	IGR	SNP	A	T	T			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	33583518	33583518	+	IGR	SNP	T	G	G			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	33647353	33647353	+	IGR	SNP	C	T	T			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	33943484	33943484	+	IGR	SNP	A	G	G	rs143135033		TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	71327622	71327622	+	IGR	SNP	G	T	T			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	88242059	88242059	+	IGR	SNP	A	G	G	rs145492222	by1000genomes	TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	21241454	21241454	+	IGR	SNP	G	A	A			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	25283901	25283901	+	IGR	SNP	C	T	T			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	35220318	35220318	+	IGR	SNP	A	T	T			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	35274023	35274023	+	IGR	SNP	A	G	G			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	52031791	52031791	+	IGR	SNP	C	T	T			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	14146205	14146205	+	IGR	SNP	A	T	T			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	35421745	35421745	+	IGR	SNP	T	C	C			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	37843932	37843932	+	IGR	SNP	G	C	C			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	57684016	57684016	+	IGR	SNP	C	T	T			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	7330569	7330569	+	IGR	SNP	C	A	A			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	82640	82640	+	IGR	SNP	G	T	T			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	21427315	21427315	+	IGR	SNP	C	A	A			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	22500697	22500697	+	IGR	SNP	C	A	A			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	31401461	31401461	+	IGR	SNP	G	A	A			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	34514037	34514037	+	IGR	SNP	G	A	A			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	36768179	36768179	+	IGR	SNP	T	C	C			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	49379350	49379350	+	IGR	SNP	C	A	A			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	9193848	9193848	+	IGR	SNP	G	T	T			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	9346245	9346245	+	IGR	SNP	C	A	A			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	108661852	108661852	+	IGR	SNP	G	A	A			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	143421346	143421346	+	IGR	SNP	T	G	G			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	148872255	148872255	+	IGR	SNP	C	T	T			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	152430829	152430829	+	IGR	SNP	A	C	C			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	152431078	152431078	+	IGR	SNP	T	C	C			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	158735316	158735316	+	IGR	SNP	G	A	A			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	161500149	161500149	+	IGR	SNP	G	C	C			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	166018358	166018358	+	IGR	SNP	C	G	G			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	187532507	187532507	+	IGR	SNP	C	G	G			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	188178748	188178748	+	IGR	SNP	C	A	A			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	189960629	189960629	+	IGR	SNP	C	G	G			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	208559298	208559298	+	IGR	SNP	T	G	G			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	211834411	211834411	+	IGR	SNP	A	T	T			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	239214049	239214049	+	IGR	SNP	A	G	G			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	242870792	242870792	+	IGR	SNP	G	C	C			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	249067293	249067294	+	IGR	DNP	CC	AA	AA			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	30644417	30644417	+	IGR	SNP	G	C	C			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	41846486	41846486	+	IGR	SNP	G	A	A			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	69777897	69777897	+	IGR	SNP	C	G	G			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	77165749	77165749	+	IGR	SNP	G	T	T			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	78239841	78239841	+	IGR	SNP	G	C	C			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	80168930	80168930	+	IGR	SNP	C	G	G			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	825103	825103	+	IGR	SNP	G	A	A			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	88658974	88658974	+	IGR	SNP	A	T	T			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	10368384	10368384	+	IGR	SNP	G	T	T			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	26070256	26070256	+	IGR	SNP	A	T	T			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	26070269	26070269	+	IGR	SNP	C	T	T			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	37243472	37243472	+	IGR	SNP	G	A	A			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	59325233	59325233	+	IGR	SNP	G	T	T			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	10705097	10705097	+	IGR	SNP	T	G	G			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	10862844	10862844	+	IGR	SNP	C	A	A			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	10880719	10880720	+	IGR	INS	-	G	G	rs148272373	by1000genomes	TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	11146102	11146102	+	IGR	SNP	C	A	A			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	9673011	9673011	+	IGR	SNP	A	G	G			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	22	16933532	16933532	+	IGR	SNP	T	C	C			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	22	49746645	49746645	+	IGR	SNP	G	T	T			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	113691025	113691025	+	IGR	SNP	G	C	C			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	13555078	13555078	+	IGR	SNP	A	G	G	rs111372856	by1000genomes	TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	168484037	168484037	+	IGR	SNP	G	T	T			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	180265471	180265471	+	IGR	SNP	C	A	A			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	210043351	210043351	+	IGR	SNP	C	A	A			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	211839723	211839723	+	IGR	SNP	C	T	T			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	21631432	21631432	+	IGR	SNP	A	T	T			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	218625435	218625435	+	IGR	SNP	C	A	A			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	21879739	21879739	+	IGR	SNP	A	G	G			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	34065245	34065245	+	IGR	SNP	A	T	T			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	3773229	3773229	+	IGR	SNP	G	T	T			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	60577278	60577278	+	IGR	SNP	A	G	G			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	7848687	7848687	+	IGR	SNP	G	T	T			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	96343564	96343564	+	IGR	SNP	G	A	A			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	126956288	126956288	+	IGR	SNP	C	A	A			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	149151280	149151280	+	IGR	SNP	A	T	T			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	154728265	154728265	+	IGR	SNP	C	T	T			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	164045640	164045640	+	IGR	SNP	C	A	A			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	180975949	180975949	+	IGR	SNP	A	G	G			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	190089578	190089578	+	IGR	SNP	C	T	T			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	191617906	191617906	+	IGR	SNP	C	T	T	rs143342235	by1000genomes	TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	19859631	19859631	+	IGR	SNP	C	G	G			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	26256309	26256309	+	IGR	SNP	T	C	C			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	57927654	57927654	+	IGR	SNP	A	G	G			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	136557420	136557420	+	IGR	SNP	C	T	T			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	14408657	14408657	+	IGR	SNP	G	A	A			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	189660617	189660617	+	IGR	SNP	C	G	G			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	27587701	27587701	+	IGR	SNP	C	T	T			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	44372	44372	+	IGR	SNP	G	T	T			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	49309378	49309378	+	IGR	SNP	A	G	G			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	123963858	123963858	+	IGR	SNP	C	A	A			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	136193283	136193283	+	IGR	SNP	T	C	C			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	170772261	170772261	+	IGR	SNP	C	A	A			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	30475587	30475587	+	IGR	SNP	G	C	C			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	4416471	4416471	+	IGR	SNP	C	G	G			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	49929619	49929619	+	IGR	SNP	T	C	C			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	5376748	5376748	+	IGR	SNP	C	A	A			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	94670910	94670910	+	IGR	SNP	T	C	C			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	10634735	10634735	+	IGR	SNP	A	G	G			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	112646460	112646460	+	IGR	SNP	C	A	A			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	115350733	115350734	+	IGR	INS	-	AG	AG	rs111555637		TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	160716314	160716314	+	IGR	SNP	A	G	G			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	23418472	23418472	+	IGR	SNP	G	T	T			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	27979313	27979313	+	IGR	SNP	A	T	T			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	32665840	32665841	+	IGR	INS	-	C	C	rs145661112	by1000genomes	TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	40714605	40714605	+	IGR	SNP	A	T	T			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	78400507	78400507	+	IGR	SNP	T	C	C			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	85708585	85708586	+	IGR	INS	-	ATGTG	ATGTG	rs112411726		TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	86796259	86796259	+	IGR	SNP	A	T	T			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	87607142	87607142	+	IGR	SNP	C	T	T			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	114785192	114785192	+	IGR	SNP	A	G	G			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	20628610	20628610	+	IGR	SNP	A	G	G			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	21259947	21259947	+	IGR	SNP	G	T	T			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	33783257	33783257	+	IGR	SNP	C	A	A			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	33783275	33783275	+	IGR	SNP	G	T	T			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	41540350	41540350	+	IGR	SNP	T	A	A			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	55780254	55780254	+	IGR	SNP	C	T	T			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	57914886	57914886	+	IGR	SNP	T	C	C			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	61823683	61823683	+	IGR	SNP	T	G	G			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	65893102	65893102	+	IGR	SNP	T	C	C			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	98857814	98857814	+	IGR	SNP	A	T	T			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	105926655	105926655	+	IGR	SNP	T	C	C			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	106022432	106022432	+	IGR	SNP	G	C	C			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	1156477	1156477	+	IGR	SNP	G	A	A	rs144907487	by1000genomes	TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	138293617	138293617	+	IGR	SNP	G	T	T			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	34517800	34517800	+	IGR	SNP	A	C	C			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	47346617	47346617	+	IGR	SNP	A	T	T			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	47347432	47347432	+	IGR	SNP	C	A	A			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	4944566	4944566	+	IGR	SNP	A	C	C			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	98865527	98865527	+	IGR	SNP	G	T	T			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	117615472	117615472	+	IGR	SNP	G	A	A			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	118328349	118328349	+	IGR	SNP	C	G	G			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	120727103	120727103	+	IGR	SNP	C	A	A			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	121325687	121325687	+	IGR	SNP	C	T	T			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	125378067	125378067	+	IGR	SNP	T	C	C			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	16063241	16063241	+	IGR	SNP	T	C	C			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	23349696	23349696	+	IGR	SNP	C	G	G			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	30800490	30800490	+	IGR	SNP	C	G	G			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	32671589	32671589	+	IGR	SNP	C	T	T			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	68380404	68380405	+	IGR	INS	-	G	G	rs144187147		TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	68425878	68425878	+	IGR	SNP	A	T	T			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	76264673	76264673	+	IGR	SNP	G	A	A			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	76276141	76276141	+	IGR	SNP	C	T	T			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	80835669	80835669	+	IGR	SNP	C	A	A			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	96705049	96705049	+	IGR	SNP	G	A	A			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	115126831	115126831	+	IGR	SNP	C	G	G			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	136743064	136743064	+	IGR	SNP	C	A	A			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	139161715	139161715	+	IGR	SNP	C	A	A			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	146271012	146271012	+	IGR	SNP	C	A	A			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	151742121	151742121	+	IGR	SNP	G	T	T			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	39234190	39234190	+	IGR	SNP	G	A	A			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	63874581	63874582	+	IGR	DNP	CC	AA	AA			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	64577086	64577086	+	IGR	SNP	G	C	C			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	68122074	68122074	+	IGR	SNP	A	G	G			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	68163424	68163424	+	IGR	SNP	A	C	C			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	84010215	84010215	+	IGR	SNP	G	C	C			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	89368270	89368270	+	IGR	SNP	A	G	G			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	99765593	99765593	+	IGR	SNP	A	C	C			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	Y	59012081	59012081	+	IGR	SNP	C	T	T			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	Y	9981809	9981809	+	IGR	DEL	C	-	-			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VASP	7408	broad.mit.edu	37	19	46020838	46020838	+	Intron	SNP	A	G	G			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VAT1L	57687	broad.mit.edu	37	16	77907658	77907658	+	Intron	SNP	A	T	T			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VAV1	7409	broad.mit.edu	37	19	6771856	6771856	+	5'Flank	SNP	G	C	C			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VDR	7421	broad.mit.edu	37	12	48240466	48240466	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VPS13D	55187	broad.mit.edu	37	1	12566973	12566973	+	Silent	SNP	G	A	A			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VPS13D	55187	broad.mit.edu	37	1	12567176	12567176	+	Intron	SNP	G	A	A			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VPS36	51028	broad.mit.edu	37	13	53000260	53000260	+	Intron	SNP	T	A	A			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR16	146845	broad.mit.edu	37	17	9538770	9538770	+	Missense_Mutation	SNP	C	A	A	rs140517505	byFrequency;by1000genomes	TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR3	10885	broad.mit.edu	37	1	118482023	118482023	+	Intron	SNP	A	T	T			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR65	149465	broad.mit.edu	37	1	43652305	43652305	+	Intron	DEL	G	-	-	rs1976284		TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR73	84942	broad.mit.edu	37	15	85197493	85197493	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XDH	7498	broad.mit.edu	37	2	31628671	31628671	+	Intron	SNP	C	A	A			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XIRP2	129446	broad.mit.edu	37	2	168103983	168103983	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XYLT1	64131	broad.mit.edu	37	16	17352994	17352994	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
YKT6	10652	broad.mit.edu	37	7	44244335	44244335	+	Intron	SNP	T	G	G			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZAN	7455	broad.mit.edu	37	7	100362997	100362997	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZBTB39	9880	broad.mit.edu	37	12	57396734	57396734	+	Silent	SNP	C	A	A	rs148071081	by1000genomes	TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZMIZ1	57178	broad.mit.edu	37	10	81053440	81053440	+	Intron	SNP	G	T	T			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF214	7761	broad.mit.edu	37	11	7021065	7021065	+	3'UTR	SNP	T	C	C			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF229	7772	broad.mit.edu	37	19	44932522	44932522	+	Missense_Mutation	SNP	G	A	A	rs61742344		TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF280C	55609	broad.mit.edu	37	X	129350196	129350196	+	Intron	SNP	C	A	A			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF385B	151126	broad.mit.edu	37	2	180679346	180679346	+	Intron	SNP	C	G	G			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF408	79797	broad.mit.edu	37	11	46722553	46722553	+	5'UTR	SNP	G	A	A			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF483	158399	broad.mit.edu	37	9	114304933	114304933	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF521	25925	broad.mit.edu	37	18	22901869	22901869	+	Intron	SNP	T	A	A			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF536	9745	broad.mit.edu	37	19	30935619	30935619	+	Nonsense_Mutation	SNP	G	T	T			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF709	163051	broad.mit.edu	37	19	12575977	12575977	+	Missense_Mutation	SNP	T	G	G			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF718	255403	broad.mit.edu	37	4	130323	130323	+	Intron	SNP	G	T	T			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF831	128611	broad.mit.edu	37	20	57769599	57769599	+	Silent	SNP	C	A	A			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF839	55778	broad.mit.edu	37	14	102792955	102792955	+	Silent	SNP	C	T	T			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNRF4	148066	broad.mit.edu	37	19	5455751	5455751	+	Silent	SNP	C	G	G			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZSWIM3	140831	broad.mit.edu	37	20	44506136	44506136	+	Silent	SNP	C	T	T			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	125150650	125150650	+	Intron	DEL	C	-	-			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	30957259	30957259	+	Intron	SNP	C	A	A			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	55065043	55065043	+	RNA	SNP	G	T	T			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	22982981	22982981	+	Intron	SNP	G	T	T			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	22997530	22997530	+	Intron	SNP	G	A	A			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	39271542	39271542	+	Intron	SNP	G	C	C			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	20491095	20491095	+	Intron	SNP	G	T	T			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	22466265	22466265	+	5'Flank	SNP	G	A	A			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	92032510	92032510	+	Intron	SNP	C	G	G			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	21544223	21544223	+	Intron	DEL	T	-	-			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	142621807	142621807	+	Intron	SNP	C	G	G			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	143168064	143168064	+	Intron	SNP	T	A	A			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	159432911	159432911	+	Intron	SNP	G	C	C	rs74875803	byFrequency;by1000genomes	TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	22	17385439	17385439	+	5'Flank	DEL	G	-	-			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	89428033	89428033	+	Intron	SNP	C	A	A			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	89976533	89976533	+	Intron	SNP	G	T	T			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	90430948	90430948	+	Intron	SNP	C	T	T			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	14770690	14770690	+	Intron	SNP	C	A	A			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	170888757	170888759	+	Intron	DEL	AAC	-	-	rs148791379		TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	180109926	180109926	+	5'Flank	SNP	G	C	C			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	3446822	3446824	+	Intron	DEL	TGA	-	-			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	107231486	107231487	+	Intron	DEL	GA	-	-	rs72482933		TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	119162574	119162574	+	Intron	SNP	G	A	A			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	134915605	134915605	+	Intron	SNP	C	T	T			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	168069964	168069964	+	RNA	SNP	C	A	A			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	132342108	132342108	+	Intron	SNP	T	C	C			TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	66459751	66459751	+	5'Flank	SNP	T	A	A	rs55835826		TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
