Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer
A1CF	29974	broad.mit.edu	37	10	52603771	52603771	+	Nonsense_Mutation	SNP	C	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCA12	26154	broad.mit.edu	37	2	215876612	215876612	+	Intron	SNP	A	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCA4	24	broad.mit.edu	37	1	94481334	94481334	+	Missense_Mutation	SNP	T	G	G			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCA5	23461	broad.mit.edu	37	17	67250089	67250089	+	Intron	SNP	T	C	C			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCB1	5243	broad.mit.edu	37	7	87150776	87150776	+	Intron	SNP	C	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCC9	10060	broad.mit.edu	37	12	22065815	22065815	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCG5	64240	broad.mit.edu	37	2	44053465	44053465	+	Intron	SNP	T	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABL1	25	broad.mit.edu	37	9	133738439	133738439	+	Intron	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACAN	176	broad.mit.edu	37	15	89385034	89385034	+	Silent	SNP	G	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACCN4	55515	broad.mit.edu	37	2	220402063	220402063	+	Intron	SNP	C	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACCSL	390110	broad.mit.edu	37	11	44070178	44070178	+	Intron	SNP	C	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACSM1	116285	broad.mit.edu	37	16	20648732	20648732	+	Silent	SNP	C	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACSS3	79611	broad.mit.edu	37	12	81568589	81568589	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACTG2	72	broad.mit.edu	37	2	74135818	74135818	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACTL7B	10880	broad.mit.edu	37	9	111617113	111617113	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACTN2	88	broad.mit.edu	37	1	236907854	236907854	+	Intron	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACTN2	88	broad.mit.edu	37	1	236918570	236918570	+	Intron	SNP	T	C	C			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACVRL1	94	broad.mit.edu	37	12	52309765	52309765	+	Intron	SNP	C	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM19	8728	broad.mit.edu	37	5	156899148	156899148	+	Intron	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM21	8747	broad.mit.edu	37	14	70926549	70926549	+	3'UTR	SNP	T	C	C			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM6	8755	broad.mit.edu	37	14	106237309	106237309	+	Intron	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM6	8755	broad.mit.edu	37	14	106963250	106963250	+	Intron	SNP	C	G	G			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM6	8755	broad.mit.edu	37	14	107083773	107083773	+	Intron	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM6	8755	broad.mit.edu	37	14	107122116	107122116	+	Intron	SNP	C	A	A	rs140579951	by1000genomes	TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM9	8754	broad.mit.edu	37	8	38884015	38884015	+	Intron	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMDEC1	27299	broad.mit.edu	37	8	24255186	24255187	+	Intron	INS	-	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS12	81792	broad.mit.edu	37	5	33630739	33630739	+	Intron	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS12	81792	broad.mit.edu	37	5	33658599	33658599	+	Intron	SNP	C	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS14	140766	broad.mit.edu	37	10	72504963	72504963	+	Intron	SNP	G	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS19	171019	broad.mit.edu	37	5	128862186	128862186	+	Intron	SNP	A	G	G			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS19	171019	broad.mit.edu	37	5	128956608	128956608	+	Intron	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS1	9510	broad.mit.edu	37	21	28212500	28212500	+	Intron	SNP	A	G	G			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS2	9509	broad.mit.edu	37	5	178553152	178553152	+	Intron	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAT3	113179	broad.mit.edu	37	19	1913034	1913034	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADCY10	55811	broad.mit.edu	37	1	167789310	167789310	+	Intron	SNP	G	C	C			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADCYAP1R1	117	broad.mit.edu	37	7	31126496	31126496	+	Intron	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADC	113451	broad.mit.edu	37	1	33558871	33558871	+	Intron	SNP	G	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADH1A	124	broad.mit.edu	37	4	100234862	100234862	+	Intron	SNP	G	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADH7	131	broad.mit.edu	37	4	100336861	100336861	+	Intron	SNP	A	G	G			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AFF2	2334	broad.mit.edu	37	X	148037047	148037047	+	Intron	SNP	T	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AFF3	3899	broad.mit.edu	37	2	100623987	100623987	+	Intron	SNP	A	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AGL	178	broad.mit.edu	37	1	100345606	100345606	+	Intron	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AHCYL2	23382	broad.mit.edu	37	7	129064950	129064950	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AHNAK2	113146	broad.mit.edu	37	14	105416009	105416009	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AHNAK2	113146	broad.mit.edu	37	14	105416572	105416572	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AIM1L	55057	broad.mit.edu	37	1	26669332	26669332	+	5'UTR	SNP	C	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AKAP8L	26993	broad.mit.edu	37	19	15511262	15511262	+	Intron	SNP	C	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AKAP9	10142	broad.mit.edu	37	7	91570531	91570531	+	Intron	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AKR1D1	6718	broad.mit.edu	37	7	137776405	137776405	+	Intron	SNP	C	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALX4	60529	broad.mit.edu	37	11	44289203	44289203	+	Intron	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AMD1	262	broad.mit.edu	37	6	111208628	111208629	+	Intron	INS	-	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AMOTL2	51421	broad.mit.edu	37	3	134084976	134084976	+	Intron	SNP	C	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AMZ1	155185	broad.mit.edu	37	7	2740076	2740076	+	5'UTR	DEL	C	-	-			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANK2	287	broad.mit.edu	37	4	114290764	114290764	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANK3	288	broad.mit.edu	37	10	61829123	61829123	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKLE2	23141	broad.mit.edu	37	12	133306845	133306845	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKRD19	138649	broad.mit.edu	37	9	95647248	95647248	+	Intron	SNP	T	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKRD20A4	728747	broad.mit.edu	37	9	69420315	69420315	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKRD20B	729171	broad.mit.edu	37	2	95513876	95513876	+	RNA	SNP	T	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKRD20B	729171	broad.mit.edu	37	2	95522972	95522972	+	5'Flank	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKRD24	170961	broad.mit.edu	37	19	4210294	4210294	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKRD24	170961	broad.mit.edu	37	19	4218088	4218088	+	Silent	SNP	C	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKRD30B	374860	broad.mit.edu	37	18	14810047	14810047	+	Intron	SNP	C	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKRD6	22881	broad.mit.edu	37	6	90333582	90333582	+	Intron	SNP	C	G	G			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKRD7	56311	broad.mit.edu	37	7	117864726	117864726	+	5'UTR	SNP	T	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKRD7	56311	broad.mit.edu	37	7	117877093	117877093	+	Intron	SNP	A	G	G			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANO1	55107	broad.mit.edu	37	11	69998551	69998551	+	Intron	SNP	T	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANO2	57101	broad.mit.edu	37	12	5687633	5687633	+	Frame_Shift_Del	DEL	G	-	-			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANO7	50636	broad.mit.edu	37	2	242149689	242149689	+	Intron	SNP	C	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AOX1	316	broad.mit.edu	37	2	201535510	201535510	+	3'UTR	SNP	C	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AP3B2	8120	broad.mit.edu	37	15	83360376	83360376	+	Intron	SNP	A	G	G			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
APCDD1L	164284	broad.mit.edu	37	20	57042036	57042036	+	Intron	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
APOBEC3F	200316	broad.mit.edu	37	22	39441663	39441663	+	Intron	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AQP12A	375318	broad.mit.edu	37	2	241631351	241631351	+	Silent	SNP	C	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AQP2	359	broad.mit.edu	37	12	50344448	50344448	+	5'Flank	SNP	T	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AQPEP	206338	broad.mit.edu	37	5	115298845	115298845	+	Silent	SNP	C	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARAP3	64411	broad.mit.edu	37	5	141036183	141036183	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGAP11A	9824	broad.mit.edu	37	15	32908666	32908666	+	Intron	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGAP15	55843	broad.mit.edu	37	2	144460973	144460973	+	Intron	SNP	T	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGAP27	201176	broad.mit.edu	37	17	43481636	43481636	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGEF12	23365	broad.mit.edu	37	11	120312615	120312615	+	Intron	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGEF2	9181	broad.mit.edu	37	1	155935171	155935171	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGEF4	50649	broad.mit.edu	37	2	131704353	131704353	+	Intron	SNP	G	C	C			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGEF6	9459	broad.mit.edu	37	X	135795422	135795422	+	Intron	SNP	A	G	G			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARID3A	1820	broad.mit.edu	37	19	966497	966497	+	Intron	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARMC9	80210	broad.mit.edu	37	2	232072915	232072915	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARRB1	408	broad.mit.edu	37	11	74977391	74977391	+	Intron	SNP	C	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARRDC4	91947	broad.mit.edu	37	15	98509011	98509011	+	Intron	SNP	C	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASB13	79754	broad.mit.edu	37	10	5683788	5683788	+	Silent	SNP	C	T	T	rs149225019	byFrequency	TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASB15	142685	broad.mit.edu	37	7	123277110	123277110	+	3'UTR	SNP	A	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASCC3	10973	broad.mit.edu	37	6	101037448	101037448	+	Intron	SNP	T	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASTN1	460	broad.mit.edu	37	1	176934442	176934442	+	Intron	SNP	A	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATAD3C	219293	broad.mit.edu	37	1	1391282	1391282	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATCAY	85300	broad.mit.edu	37	19	3907700	3907700	+	Intron	SNP	C	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATOH8	84913	broad.mit.edu	37	2	85981923	85981923	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP10B	23120	broad.mit.edu	37	5	160025569	160025569	+	Intron	SNP	A	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP13A2	23400	broad.mit.edu	37	1	17323049	17323049	+	Intron	SNP	C	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP1A2	477	broad.mit.edu	37	1	160100181	160100181	+	Intron	SNP	G	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP2C1	27032	broad.mit.edu	37	3	130651122	130651122	+	Intron	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP2C2	9914	broad.mit.edu	37	16	84497390	84497390	+	3'UTR	SNP	G	C	C			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP4A	495	broad.mit.edu	37	19	36054243	36054243	+	Intron	SNP	C	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP8A2	51761	broad.mit.edu	37	13	26153876	26153876	+	Intron	DEL	G	-	-			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AVPR1A	552	broad.mit.edu	37	12	63544125	63544125	+	Silent	SNP	C	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AXIN2	8313	broad.mit.edu	37	17	63534540	63534540	+	Intron	SNP	C	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BAALC	79870	broad.mit.edu	37	8	104225035	104225035	+	Intron	SNP	T	G	G			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BAIAP3	8938	broad.mit.edu	37	16	1394319	1394319	+	Splice_Site	SNP	G	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BANK1	55024	broad.mit.edu	37	4	102992455	102992455	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BAT2L1	84726	broad.mit.edu	37	9	134340162	134340162	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BCL9L	283149	broad.mit.edu	37	11	118770221	118770221	+	Intron	SNP	T	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BCMO1	53630	broad.mit.edu	37	16	81303613	81303613	+	Intron	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BCMO1	53630	broad.mit.edu	37	16	81324046	81324046	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BCR	613	broad.mit.edu	37	22	23637450	23637450	+	Intron	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BEST1	7439	broad.mit.edu	37	11	61722757	61722757	+	Intron	SNP	G	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BICC1	80114	broad.mit.edu	37	10	60461881	60461881	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BIRC6	57448	broad.mit.edu	37	2	32724693	32724693	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BLK	640	broad.mit.edu	37	8	11400849	11400849	+	Missense_Mutation	SNP	C	A	A	rs142352008	byFrequency	TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BTBD11	121551	broad.mit.edu	37	12	107937716	107937716	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BTBD16	118663	broad.mit.edu	37	10	124092041	124092041	+	Intron	SNP	G	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BTBD7	55727	broad.mit.edu	37	14	93714667	93714667	+	Intron	SNP	C	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C10orf79	80217	broad.mit.edu	37	10	105928572	105928572	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C10orf99	387695	broad.mit.edu	37	10	85933576	85933576	+	5'UTR	SNP	C	G	G			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C12orf40	283461	broad.mit.edu	37	12	40076498	40076498	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C12orf51	283450	broad.mit.edu	37	12	112642205	112642205	+	Intron	SNP	C	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C12orf63	374467	broad.mit.edu	37	12	97102601	97102601	+	Intron	SNP	C	G	G			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C13orf33	84935	broad.mit.edu	37	13	31480658	31480658	+	Silent	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C14orf118	55668	broad.mit.edu	37	14	76644549	76644549	+	Intron	SNP	A	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C14orf183	196913	broad.mit.edu	37	14	50551964	50551964	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C14orf4	64207	broad.mit.edu	37	14	77492209	77492209	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C15orf51	196968	broad.mit.edu	37	15	100332044	100332044	+	RNA	SNP	T	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C16orf82	162083	broad.mit.edu	37	16	27078670	27078670	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf186	440712	broad.mit.edu	37	1	206239438	206239438	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf87	127795	broad.mit.edu	37	1	60506908	60506908	+	Intron	SNP	A	G	G			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C20orf26	26074	broad.mit.edu	37	20	20243491	20243491	+	Intron	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C20orf7	79133	broad.mit.edu	37	20	13797026	13797026	+	Intron	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C21orf29	54084	broad.mit.edu	37	21	46097035	46097035	+	Intron	SNP	C	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C2orf71	388939	broad.mit.edu	37	2	29294983	29294984	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C3orf63	23272	broad.mit.edu	37	3	56683054	56683054	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C4orf22	255119	broad.mit.edu	37	4	81283878	81283878	+	Intron	SNP	C	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C6orf165	154313	broad.mit.edu	37	6	88151895	88151895	+	Intron	SNP	A	G	G			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C8A	731	broad.mit.edu	37	1	57347420	57347420	+	Intron	SNP	T	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C8orf80	389643	broad.mit.edu	37	8	27905020	27905020	+	Intron	SNP	T	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C9orf46	55848	broad.mit.edu	37	9	5360930	5360930	+	Intron	SNP	T	C	C			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C9orf7	11094	broad.mit.edu	37	9	136328714	136328714	+	Intron	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CABP1	9478	broad.mit.edu	37	12	121097721	121097721	+	Intron	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1B	774	broad.mit.edu	37	9	141010115	141010115	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1C	775	broad.mit.edu	37	12	2716038	2716038	+	Intron	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1C	775	broad.mit.edu	37	12	2763117	2763117	+	Intron	SNP	C	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1D	776	broad.mit.edu	37	3	53804040	53804040	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1E	777	broad.mit.edu	37	1	181689367	181689367	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1E	777	broad.mit.edu	37	1	181753016	181753016	+	Intron	SNP	A	G	G			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1I	8911	broad.mit.edu	37	22	40075698	40075698	+	Intron	SNP	C	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1S	779	broad.mit.edu	37	1	201044882	201044883	+	Intron	DNP	CC	GG	GG			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA2D1	781	broad.mit.edu	37	7	81603792	81603792	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA2D2	9254	broad.mit.edu	37	3	50417050	50417050	+	Intron	SNP	C	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA2D3	55799	broad.mit.edu	37	3	54603855	54603855	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA2D3	55799	broad.mit.edu	37	3	54912971	54912971	+	Intron	SNP	G	C	C			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNG6	59285	broad.mit.edu	37	19	54502970	54502970	+	Silent	SNP	C	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CADM2	253559	broad.mit.edu	37	3	85961790	85961790	+	Intron	SNP	T	C	C			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CAGE1	285782	broad.mit.edu	37	6	7327238	7327238	+	Intron	SNP	A	G	G			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CALCOCO1	57658	broad.mit.edu	37	12	54105846	54105846	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CALCRL	10203	broad.mit.edu	37	2	188247947	188247947	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CALR3	125972	broad.mit.edu	37	19	16593367	16593367	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CAMK2D	817	broad.mit.edu	37	4	114436160	114436160	+	Intron	SNP	C	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CAMKK1	84254	broad.mit.edu	37	17	3773091	3773091	+	Intron	SNP	C	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CAST	831	broad.mit.edu	37	5	96062477	96062477	+	Intron	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CBLB	868	broad.mit.edu	37	3	105464597	105464597	+	Intron	SNP	C	G	G			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CC2D2A	57545	broad.mit.edu	37	4	15591208	15591208	+	Missense_Mutation	SNP	A	C	C			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC108	255101	broad.mit.edu	37	2	219886523	219886523	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC149	91050	broad.mit.edu	37	4	24878130	24878130	+	Intron	SNP	T	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC150	284992	broad.mit.edu	37	2	197521919	197521919	+	Intron	SNP	A	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC151	115948	broad.mit.edu	37	19	11541544	11541545	+	Missense_Mutation	DNP	GG	TC	TC			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC18	343099	broad.mit.edu	37	1	93648850	93648850	+	Intron	SNP	G	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC46	201134	broad.mit.edu	37	17	63746823	63746823	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC52	152185	broad.mit.edu	37	3	113176218	113176218	+	Intron	SNP	G	C	C			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC59	29080	broad.mit.edu	37	12	82750917	82750917	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC6	8030	broad.mit.edu	37	10	61592194	61592194	+	Intron	SNP	C	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC80	151887	broad.mit.edu	37	3	112324420	112324420	+	Silent	SNP	C	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC83	220047	broad.mit.edu	37	11	85626666	85626666	+	Intron	SNP	C	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC93	54520	broad.mit.edu	37	2	118694129	118694129	+	Intron	SNP	A	C	C			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCIN	881	broad.mit.edu	37	9	36171041	36171042	+	Frame_Shift_Del	DEL	TG	-	-			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCNO	10309	broad.mit.edu	37	5	54527339	54527339	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD163	9332	broad.mit.edu	37	12	7647515	7647515	+	Intron	SNP	C	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD177	57126	broad.mit.edu	37	19	43859867	43859867	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD1C	911	broad.mit.edu	37	1	158260984	158260984	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD200R1	131450	broad.mit.edu	37	3	112647959	112647959	+	Intron	SNP	C	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDC20B	166979	broad.mit.edu	37	5	54420672	54420672	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH10	1008	broad.mit.edu	37	5	24536052	24536052	+	Intron	SNP	A	G	G			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH11	1009	broad.mit.edu	37	16	64982488	64982488	+	Intron	SNP	T	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH17	1015	broad.mit.edu	37	8	95186447	95186447	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH18	1016	broad.mit.edu	37	5	19543963	19543963	+	Intron	SNP	C	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH22	64405	broad.mit.edu	37	20	44856177	44856177	+	Nonsense_Mutation	SNP	C	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH23	64072	broad.mit.edu	37	10	73544623	73544623	+	Intron	SNP	C	G	G			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH23	64072	broad.mit.edu	37	10	73550964	73550964	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH23	64072	broad.mit.edu	37	10	73553269	73553269	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH2	1000	broad.mit.edu	37	18	25572615	25572615	+	Intron	SNP	T	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDHR2	54825	broad.mit.edu	37	5	175995737	175995737	+	Silent	SNP	G	C	C			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDHR3	222256	broad.mit.edu	37	7	105656440	105656441	+	Missense_Mutation	DNP	CT	TA	TA			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDK15	65061	broad.mit.edu	37	2	202671602	202671602	+	Intron	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDK17	5128	broad.mit.edu	37	12	96780624	96780624	+	Intron	SNP	C	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CEACAM20	125931	broad.mit.edu	37	19	45029372	45029372	+	Intron	SNP	A	G	G			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CECR2	27443	broad.mit.edu	37	22	17956598	17956598	+	5'Flank	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CECR5	27440	broad.mit.edu	37	22	17629630	17629630	+	Intron	SNP	G	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CELA2A	63036	broad.mit.edu	37	1	15789878	15789878	+	Intron	SNP	C	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CELA3A	10136	broad.mit.edu	37	1	22328342	22328342	+	Intron	SNP	G	C	C			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CELA3B	23436	broad.mit.edu	37	1	22310714	22310714	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CEP70	80321	broad.mit.edu	37	3	138248145	138248145	+	Intron	SNP	T	C	C			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CES7	221223	broad.mit.edu	37	16	55907815	55907815	+	Frame_Shift_Del	DEL	G	-	-			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHCHD3	54927	broad.mit.edu	37	7	132470256	132470256	+	3'UTR	SNP	T	C	C			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHD5	26038	broad.mit.edu	37	1	6204242	6204242	+	Intron	SNP	C	G	G			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHD8	57680	broad.mit.edu	37	14	21876727	21876727	+	Intron	SNP	C	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHL1	10752	broad.mit.edu	37	3	419556	419556	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHML	1122	broad.mit.edu	37	1	241798259	241798259	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHML	1122	broad.mit.edu	37	1	241798846	241798846	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHN2	1124	broad.mit.edu	37	7	29519962	29519962	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHST6	4166	broad.mit.edu	37	16	75513119	75513119	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHSY3	337876	broad.mit.edu	37	5	129521158	129521158	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CIAPIN1	57019	broad.mit.edu	37	16	57468158	57468158	+	Intron	SNP	C	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CIB2	10518	broad.mit.edu	37	15	78403678	78403678	+	Intron	SNP	C	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CIB3	117286	broad.mit.edu	37	19	16279121	16279121	+	Intron	SNP	G	C	C			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CIB4	130106	broad.mit.edu	37	2	26864103	26864103	+	Intron	SNP	C	G	G			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLCA2	9635	broad.mit.edu	37	1	86891153	86891153	+	Nonsense_Mutation	SNP	T	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLCA4	22802	broad.mit.edu	37	1	87025407	87025407	+	Intron	SNP	A	G	G			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLEC4G	339390	broad.mit.edu	37	19	7794157	7794157	+	3'UTR	SNP	A	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLIP2	7461	broad.mit.edu	37	7	73768238	73768239	+	Missense_Mutation	DNP	GG	AT	AT	rs150032298		TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLOCK	9575	broad.mit.edu	37	4	56345147	56345147	+	Intron	SNP	T	C	C			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLRN1OS	116933	broad.mit.edu	37	3	150578584	150578584	+	Intron	SNP	G	C	C			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CMPK2	129607	broad.mit.edu	37	2	6990253	6990253	+	Intron	SNP	T	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTNAP3	79937	broad.mit.edu	37	9	39118245	39118245	+	Missense_Mutation	SNP	G	T	T	rs146599628		TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTNAP5	129684	broad.mit.edu	37	2	125671764	125671764	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL11A1	1301	broad.mit.edu	37	1	103449614	103449614	+	Intron	SNP	T	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL11A1	1301	broad.mit.edu	37	1	103496798	103496799	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL12A1	1303	broad.mit.edu	37	6	75851659	75851659	+	Intron	SNP	A	G	G			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL15A1	1306	broad.mit.edu	37	9	101811914	101811914	+	Intron	SNP	C	G	G			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL16A1	1307	broad.mit.edu	37	1	32156632	32156632	+	Intron	SNP	C	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL16A1	1307	broad.mit.edu	37	1	32163953	32163953	+	Intron	SNP	T	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL19A1	1310	broad.mit.edu	37	6	70850845	70850845	+	Splice_Site	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL1A2	1278	broad.mit.edu	37	7	94034569	94034569	+	Intron	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL22A1	169044	broad.mit.edu	37	8	139614397	139614397	+	Silent	SNP	G	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL3A1	1281	broad.mit.edu	37	2	189839472	189839472	+	Intron	SNP	C	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL3A1	1281	broad.mit.edu	37	2	189858939	189858939	+	Intron	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL3A1	1281	broad.mit.edu	37	2	189868286	189868286	+	Intron	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL4A2	1284	broad.mit.edu	37	13	111155653	111155653	+	Intron	SNP	C	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL4A4	1286	broad.mit.edu	37	2	227872247	227872247	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL4A4	1286	broad.mit.edu	37	2	227973939	227973939	+	Splice_Site	SNP	C	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL4A4	1286	broad.mit.edu	37	2	228009238	228009238	+	Silent	SNP	T	C	C			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL4A5	1287	broad.mit.edu	37	X	107908721	107908721	+	Intron	SNP	G	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL5A1	1289	broad.mit.edu	37	9	137624072	137624072	+	Intron	SNP	C	G	G			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL5A1	1289	broad.mit.edu	37	9	137715332	137715332	+	Intron	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL5A2	1290	broad.mit.edu	37	2	189906232	189906232	+	Intron	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL5A3	50509	broad.mit.edu	37	19	10078792	10078792	+	Intron	SNP	C	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL6A3	1293	broad.mit.edu	37	2	238263564	238263564	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL6A6	131873	broad.mit.edu	37	3	130289995	130289995	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL9A2	1298	broad.mit.edu	37	1	40768890	40768890	+	Intron	SNP	T	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COMMD1	150684	broad.mit.edu	37	2	62228015	62228015	+	Silent	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COMP	1311	broad.mit.edu	37	19	18897496	18897496	+	Intron	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COPS2	9318	broad.mit.edu	37	15	49426538	49426538	+	Silent	SNP	T	C	C			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COPZ2	51226	broad.mit.edu	37	17	46103847	46103847	+	Intron	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPAMD8	27151	broad.mit.edu	37	19	17058164	17058164	+	Intron	SNP	C	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPNE1	8904	broad.mit.edu	37	20	34219852	34219852	+	Intron	SNP	C	A	A	rs139024672	by1000genomes	TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPPED1	55313	broad.mit.edu	37	16	12798851	12798851	+	Silent	SNP	C	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPS1	1373	broad.mit.edu	37	2	211512455	211512455	+	Intron	SNP	C	G	G			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPZ	8532	broad.mit.edu	37	4	8621242	8621242	+	Silent	SNP	C	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CP	1356	broad.mit.edu	37	3	148917570	148917570	+	Missense_Mutation	SNP	G	A	A	rs35331711	byFrequency;by1000genomes	TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CRB1	23418	broad.mit.edu	37	1	197404099	197404099	+	Nonsense_Mutation	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CREB3L2	64764	broad.mit.edu	37	7	137597844	137597844	+	Intron	SNP	C	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CREBBP	1387	broad.mit.edu	37	16	3790602	3790602	+	Intron	SNP	C	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CRELD1	78987	broad.mit.edu	37	3	9979755	9979755	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CRP	1401	broad.mit.edu	37	1	159683237	159683237	+	3'UTR	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CRYBA4	1413	broad.mit.edu	37	22	27026480	27026480	+	3'UTR	SNP	C	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSGALNACT1	55790	broad.mit.edu	37	8	19524523	19524523	+	Intron	SNP	A	G	G			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSGALNACT1	55790	broad.mit.edu	37	8	19524527	19524527	+	Intron	SNP	A	G	G			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD1	64478	broad.mit.edu	37	8	3205673	3205673	+	Silent	SNP	T	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD1	64478	broad.mit.edu	37	8	3432588	3432588	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD1	64478	broad.mit.edu	37	8	4645079	4645079	+	Intron	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD2	114784	broad.mit.edu	37	1	34238314	34238314	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD3	114788	broad.mit.edu	37	8	113421257	113421257	+	Silent	SNP	C	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSPP1	79848	broad.mit.edu	37	8	67976572	67976572	+	5'Flank	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSTL1	128817	broad.mit.edu	37	20	23424813	23424813	+	Intron	SNP	C	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTAG2	30848	broad.mit.edu	37	X	153880837	153880837	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTDP1	9150	broad.mit.edu	37	18	77513803	77513803	+	3'UTR	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTNNA1	1495	broad.mit.edu	37	5	138260225	138260225	+	Nonsense_Mutation	SNP	A	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTNNA3	29119	broad.mit.edu	37	10	67680535	67680535	+	Intron	SNP	G	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTNNA3	29119	broad.mit.edu	37	10	68381578	68381578	+	Intron	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTNND2	1501	broad.mit.edu	37	5	11411800	11411800	+	Intron	SNP	A	G	G			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTR9	9646	broad.mit.edu	37	11	10789585	10789585	+	Intron	SNP	C	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CUBN	8029	broad.mit.edu	37	10	17061728	17061728	+	Intron	DEL	C	-	-			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CUBN	8029	broad.mit.edu	37	10	17083166	17083166	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYFIP2	26999	broad.mit.edu	37	5	156787323	156787323	+	Silent	SNP	C	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP27A1	1593	broad.mit.edu	37	2	219677646	219677646	+	Splice_Site	DEL	G	-	-			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP2A7	1549	broad.mit.edu	37	19	41497406	41497406	+	Intron	SNP	G	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP39A1	51302	broad.mit.edu	37	6	46555746	46555746	+	Intron	SNP	A	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP4A22	284541	broad.mit.edu	37	1	47609956	47609956	+	Intron	SNP	C	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP7B1	9420	broad.mit.edu	37	8	65528624	65528624	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DACH2	117154	broad.mit.edu	37	X	85415945	85415945	+	Intron	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DAPL1	92196	broad.mit.edu	37	2	159663519	159663519	+	Intron	SNP	T	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DBC1	1620	broad.mit.edu	37	9	122000925	122000925	+	Intron	SNP	C	G	G			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCAF6	55827	broad.mit.edu	37	1	167936005	167936005	+	Intron	SNP	C	G	G			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCD	117159	broad.mit.edu	37	12	55040935	55040935	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCHS2	54798	broad.mit.edu	37	4	155294923	155294923	+	Intron	SNP	G	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCLK1	9201	broad.mit.edu	37	13	36699755	36699755	+	Intron	SNP	C	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCP1A	55802	broad.mit.edu	37	3	53326037	53326037	+	Intron	SNP	G	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCP1B	196513	broad.mit.edu	37	12	2113409	2113409	+	Intron	SNP	C	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DDX11	1663	broad.mit.edu	37	12	31256895	31256895	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DDX1	1653	broad.mit.edu	37	2	15770224	15770224	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DDX26B	203522	broad.mit.edu	37	X	134706995	134706995	+	Intron	SNP	C	G	G			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DDX54	79039	broad.mit.edu	37	12	113603731	113603731	+	Silent	SNP	G	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DENND5A	23258	broad.mit.edu	37	11	9215202	9215202	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DGCR14	8220	broad.mit.edu	37	22	19132106	19132106	+	Silent	SNP	C	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DGKG	1608	broad.mit.edu	37	3	186024523	186024523	+	Intron	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DGKK	139189	broad.mit.edu	37	X	50122861	50122861	+	Intron	SNP	C	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DGKZ	8525	broad.mit.edu	37	11	46391377	46391377	+	Intron	SNP	C	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DHRS7C	201140	broad.mit.edu	37	17	9694337	9694337	+	Intron	SNP	C	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DICER1	23405	broad.mit.edu	37	14	95581822	95581822	+	Intron	SNP	T	C	C			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DKFZP586I1420	222161	broad.mit.edu	37	7	30412065	30412065	+	RNA	SNP	C	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DLAT	1737	broad.mit.edu	37	11	111922022	111922022	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DLG2	1740	broad.mit.edu	37	11	84257185	84257185	+	Intron	SNP	G	C	C			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DLGAP1	9229	broad.mit.edu	37	18	3597383	3597383	+	Intron	SNP	A	G	G			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DMBT1	1755	broad.mit.edu	37	10	124390487	124390487	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DMBX1	127343	broad.mit.edu	37	1	46972733	46972733	+	Silent	SNP	C	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH10	196385	broad.mit.edu	37	12	124382207	124382207	+	Intron	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH10	196385	broad.mit.edu	37	12	124382216	124382216	+	Intron	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH11	8701	broad.mit.edu	37	7	21628809	21628809	+	Intron	SNP	A	G	G			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH1	25981	broad.mit.edu	37	3	52417787	52417787	+	Intron	SNP	C	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH3	55567	broad.mit.edu	37	16	20994269	20994269	+	Intron	SNP	G	C	C			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH8	1769	broad.mit.edu	37	6	38810040	38810040	+	Intron	SNP	C	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAJC12	56521	broad.mit.edu	37	10	69557042	69557042	+	Intron	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAJC13	23317	broad.mit.edu	37	3	132217928	132217928	+	Intron	SNP	A	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAJC16	23341	broad.mit.edu	37	1	15888598	15888598	+	Intron	SNP	C	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNTTIP1	116092	broad.mit.edu	37	20	44433896	44433896	+	Intron	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DOCK3	1795	broad.mit.edu	37	3	50914979	50914979	+	Intron	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DOCK6	57572	broad.mit.edu	37	19	11353908	11353908	+	Intron	SNP	G	C	C			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DPF3	8110	broad.mit.edu	37	14	73198507	73198507	+	Intron	SNP	G	C	C			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DPYD	1806	broad.mit.edu	37	1	98157295	98157295	+	Missense_Mutation	SNP	A	C	C			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DSCAM	1826	broad.mit.edu	37	21	41458918	41458918	+	Intron	SNP	C	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DTNA	1837	broad.mit.edu	37	18	32395800	32395800	+	Intron	SNP	G	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DTNA	1837	broad.mit.edu	37	18	32459695	32459695	+	Intron	DEL	C	-	-			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DUSP15	128853	broad.mit.edu	37	20	30458315	30458315	+	Intron	SNP	G	C	C			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DUSP27	92235	broad.mit.edu	37	1	167096834	167096834	+	Silent	SNP	C	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DUSP3	1845	broad.mit.edu	37	17	41846945	41846945	+	3'UTR	SNP	C	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DYDC1	143241	broad.mit.edu	37	10	82101928	82101928	+	Intron	SNP	A	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DYNC1I1	1780	broad.mit.edu	37	7	95661840	95661840	+	Intron	SNP	C	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DYNC1I1	1780	broad.mit.edu	37	7	95662047	95662047	+	Silent	SNP	T	C	C			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DYSF	8291	broad.mit.edu	37	2	71780343	71780343	+	Intron	SNP	C	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DZIP1L	199221	broad.mit.edu	37	3	137807429	137807429	+	Intron	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DZIP3	9666	broad.mit.edu	37	3	108403123	108403123	+	Missense_Mutation	SNP	G	C	C	rs148202329		TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
E2F7	144455	broad.mit.edu	37	12	77427880	77427880	+	Intron	SNP	C	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EBF2	64641	broad.mit.edu	37	8	25766105	25766105	+	Intron	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EBF3	253738	broad.mit.edu	37	10	131671648	131671648	+	Intron	SNP	G	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ECE1	1889	broad.mit.edu	37	1	21548107	21548107	+	Intron	SNP	C	G	G			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EDN3	1908	broad.mit.edu	37	20	57897589	57897589	+	Intron	SNP	C	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EEF1A1P9	441032	broad.mit.edu	37	4	106405836	106405836	+	5'Flank	SNP	C	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EFCAB4B	84766	broad.mit.edu	37	12	3788294	3788294	+	Intron	SNP	T	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EFHB	151651	broad.mit.edu	37	3	19947324	19947324	+	Intron	SNP	C	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EFHC2	80258	broad.mit.edu	37	X	44109566	44109566	+	Silent	SNP	T	C	C			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EFS	10278	broad.mit.edu	37	14	23828857	23828857	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EFTUD2	9343	broad.mit.edu	37	17	42941240	42941240	+	Intron	SNP	T	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EGFLAM	133584	broad.mit.edu	37	5	38435412	38435412	+	Intron	SNP	T	C	C			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EGFR	1956	broad.mit.edu	37	7	55242592	55242592	+	Intron	SNP	T	G	G			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EIF2AK1	27102	broad.mit.edu	37	7	6068579	6068579	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ELMO1	9844	broad.mit.edu	37	7	37296119	37296119	+	Intron	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ELTD1	64123	broad.mit.edu	37	1	79403639	79403639	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EMID2	136227	broad.mit.edu	37	7	101196563	101196563	+	Intron	SNP	C	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EMILIN3	90187	broad.mit.edu	37	20	39992303	39992303	+	Nonsense_Mutation	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EMR1	2015	broad.mit.edu	37	19	6903695	6903695	+	Intron	SNP	A	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EMR1	2015	broad.mit.edu	37	19	6927994	6927994	+	Intron	DEL	G	-	-			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ENPP2	5168	broad.mit.edu	37	8	120592356	120592356	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ENPP2	5168	broad.mit.edu	37	8	120594912	120594912	+	Intron	SNP	A	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPB41L4B	54566	broad.mit.edu	37	9	111970426	111970426	+	Intron	SNP	C	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPB41L4B	54566	broad.mit.edu	37	9	112018805	112018805	+	Intron	SNP	C	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPHA3	2042	broad.mit.edu	37	3	89499354	89499354	+	Silent	SNP	C	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPHB1	2047	broad.mit.edu	37	3	134911681	134911681	+	Intron	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ERBB2	2064	broad.mit.edu	37	17	37879576	37879576	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ERI2	112479	broad.mit.edu	37	16	20871695	20871695	+	Intron	SNP	C	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ERLIN1	10613	broad.mit.edu	37	10	101923658	101923658	+	Intron	SNP	A	G	G			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ERN1	2081	broad.mit.edu	37	17	62135165	62135165	+	Silent	SNP	G	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EVC	2121	broad.mit.edu	37	4	5750010	5750010	+	Missense_Mutation	SNP	G	T	T	rs150923920	byFrequency	TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EYS	346007	broad.mit.edu	37	6	66204803	66204803	+	Silent	SNP	C	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EZH1	2145	broad.mit.edu	37	17	40865549	40865549	+	Intron	SNP	T	C	C			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
F11R	50848	broad.mit.edu	37	1	161004598	161004598	+	Intron	SNP	G	C	C			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
F13B	2165	broad.mit.edu	37	1	197020111	197020111	+	Intron	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAIM2	23017	broad.mit.edu	37	12	50294975	50294975	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM114A1	92689	broad.mit.edu	37	4	38937413	38937413	+	Splice_Site	SNP	T	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM120B	84498	broad.mit.edu	37	6	170626835	170626835	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM125A	93343	broad.mit.edu	37	19	17533201	17533201	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM135B	51059	broad.mit.edu	37	8	139153428	139153428	+	Intron	SNP	A	G	G			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM135B	51059	broad.mit.edu	37	8	139153645	139153645	+	Intron	SNP	C	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM135B	51059	broad.mit.edu	37	8	139160736	139160736	+	Intron	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM135B	51059	broad.mit.edu	37	8	139380008	139380008	+	Intron	SNP	C	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM181B	220382	broad.mit.edu	37	11	82443607	82443607	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM188B	84182	broad.mit.edu	37	7	30880256	30880256	+	Intron	SNP	C	G	G			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM188B	84182	broad.mit.edu	37	7	30921744	30921744	+	Intron	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM19A2	338811	broad.mit.edu	37	12	62274289	62274289	+	Intron	SNP	G	C	C			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM38B	63895	broad.mit.edu	37	18	10681856	10681856	+	Intron	SNP	A	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM49B	51571	broad.mit.edu	37	8	130874493	130874493	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM58B	339521	broad.mit.edu	37	1	200182807	200182807	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM65B	9750	broad.mit.edu	37	6	24870975	24870975	+	Intron	SNP	C	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM70A	55026	broad.mit.edu	37	X	119427944	119427945	+	Intron	DNP	CA	GG	GG			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM73B	84895	broad.mit.edu	37	9	131811791	131811791	+	Intron	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM75A2	642265	broad.mit.edu	37	9	39887061	39887061	+	Silent	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM75A6	389730	broad.mit.edu	37	9	43628477	43628477	+	Intron	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM83C	128876	broad.mit.edu	37	20	33874960	33874960	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM9B	171483	broad.mit.edu	37	X	8997491	8997491	+	Intron	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FASTKD2	22868	broad.mit.edu	37	2	207636107	207636107	+	Intron	SNP	A	C	C			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAT3	120114	broad.mit.edu	37	11	92430651	92430651	+	Intron	SNP	T	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FATE1	89885	broad.mit.edu	37	X	150890113	150890113	+	Intron	SNP	C	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBN1	2200	broad.mit.edu	37	15	48741007	48741007	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBXO47	494188	broad.mit.edu	37	17	37101330	37101330	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBXW12	285231	broad.mit.edu	37	3	48414408	48414408	+	Intron	SNP	C	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FCAR	2204	broad.mit.edu	37	19	55399520	55399520	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FCGR1A	2209	broad.mit.edu	37	1	149762713	149762713	+	Intron	SNP	C	G	G			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FETUB	26998	broad.mit.edu	37	3	186358877	186358877	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FEZ1	9638	broad.mit.edu	37	11	125330404	125330404	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FGA	2243	broad.mit.edu	37	4	155510525	155510525	+	Intron	SNP	C	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FGD1	2245	broad.mit.edu	37	X	54475766	54475766	+	Intron	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FGD4	121512	broad.mit.edu	37	12	32729474	32729474	+	Intron	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FGD5	152273	broad.mit.edu	37	3	14939087	14939087	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FGF12	2257	broad.mit.edu	37	3	192441806	192441806	+	Intron	SNP	A	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FGF13	2258	broad.mit.edu	37	X	137790836	137790836	+	Intron	SNP	T	G	G			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FGF14	2259	broad.mit.edu	37	13	102670640	102670640	+	Intron	SNP	C	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FGFR1OP	11116	broad.mit.edu	37	6	167438508	167438508	+	Intron	SNP	A	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FGFR4	2264	broad.mit.edu	37	5	176520134	176520134	+	Intron	SNP	G	C	C			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FGL2	10875	broad.mit.edu	37	7	76828895	76828895	+	Silent	SNP	G	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FHL5	9457	broad.mit.edu	37	6	97053948	97053948	+	Splice_Site	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FIBCD1	84929	broad.mit.edu	37	9	133780763	133780763	+	Silent	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FKBP15	23307	broad.mit.edu	37	9	116029879	116029879	+	Intron	SNP	G	C	C			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLI1	2313	broad.mit.edu	37	11	128680420	128680420	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLI1	2313	broad.mit.edu	37	11	128680554	128680554	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLJ25363	401082	broad.mit.edu	37	3	109128548	109128548	+	5'Flank	SNP	G	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLJ37543	285668	broad.mit.edu	37	5	60999888	60999888	+	3'UTR	SNP	C	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLJ40330	645784	broad.mit.edu	37	2	89100629	89100629	+	RNA	SNP	C	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLT3	2322	broad.mit.edu	37	13	28607930	28607931	+	Intron	INS	-	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FNDC7	163479	broad.mit.edu	37	1	109268418	109268418	+	Silent	SNP	C	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FOXP1	27086	broad.mit.edu	37	3	71064870	71064870	+	Intron	SNP	G	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FOXP2	93986	broad.mit.edu	37	7	114269751	114269751	+	Intron	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FSCN3	29999	broad.mit.edu	37	7	127236213	127236213	+	Intron	SNP	C	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FSHB	2488	broad.mit.edu	37	11	30255032	30255032	+	Intron	SNP	A	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FSHR	2492	broad.mit.edu	37	2	49190382	49190382	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FSTL5	56884	broad.mit.edu	37	4	162508658	162508659	+	Nonsense_Mutation	DNP	AG	TT	TT			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FUT3	2525	broad.mit.edu	37	19	5844847	5844847	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FXN	2395	broad.mit.edu	37	9	71686113	71686113	+	Intron	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FZD2	2535	broad.mit.edu	37	17	42635672	42635672	+	Nonsense_Mutation	SNP	A	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FZD2	2535	broad.mit.edu	37	17	42636025	42636025	+	Silent	SNP	G	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FZD5	7855	broad.mit.edu	37	2	208632887	208632887	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABBR2	9568	broad.mit.edu	37	9	101258599	101258599	+	Intron	SNP	C	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABRB3	2562	broad.mit.edu	37	15	27128412	27128412	+	Intron	SNP	T	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABRR1	2569	broad.mit.edu	37	6	89910775	89910775	+	Intron	SNP	C	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GAD2	2572	broad.mit.edu	37	10	26570076	26570076	+	Intron	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GALNS	2588	broad.mit.edu	37	16	88893064	88893064	+	Intron	SNP	C	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GALNTL6	442117	broad.mit.edu	37	4	172735723	172735723	+	5'UTR	SNP	C	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GALNTL6	442117	broad.mit.edu	37	4	173301593	173301593	+	Intron	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GAL	51083	broad.mit.edu	37	11	68458334	68458335	+	Intron	DNP	TC	CT	CT			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GATA1	2623	broad.mit.edu	37	X	48650074	48650074	+	Intron	SNP	C	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GCA	25801	broad.mit.edu	37	2	163209060	163209060	+	Intron	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GIMAP8	155038	broad.mit.edu	37	7	150174341	150174341	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLB1L3	112937	broad.mit.edu	37	11	134147091	134147091	+	Intron	SNP	G	C	C			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLDC	2731	broad.mit.edu	37	9	6604786	6604786	+	Splice_Site	SNP	T	C	C			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLI1	2735	broad.mit.edu	37	12	57858626	57858626	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLI1	2735	broad.mit.edu	37	12	57861395	57861395	+	Intron	SNP	C	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLI3	2737	broad.mit.edu	37	7	42004046	42004046	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLT25D1	79709	broad.mit.edu	37	19	17691563	17691563	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GMEB1	10691	broad.mit.edu	37	1	29040746	29040746	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GMFG	9535	broad.mit.edu	37	19	39820165	39820165	+	Intron	SNP	C	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GNAI2	2771	broad.mit.edu	37	3	50295158	50295158	+	Intron	SNP	G	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GOLGA8E	390535	broad.mit.edu	37	15	23444035	23444035	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPA33	10223	broad.mit.edu	37	1	167038196	167038196	+	Silent	SNP	C	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPAT2	150763	broad.mit.edu	37	2	96691837	96691837	+	Intron	SNP	A	G	G			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPATCH2	55105	broad.mit.edu	37	1	217804637	217804637	+	5'Flank	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPC5	2262	broad.mit.edu	37	13	92345880	92345880	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPM6A	2823	broad.mit.edu	37	4	176556066	176556066	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR148	344561	broad.mit.edu	37	2	131487498	131487498	+	Silent	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR149	344758	broad.mit.edu	37	3	154071696	154071696	+	Intron	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR158	57512	broad.mit.edu	37	10	25861792	25861792	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR158	57512	broad.mit.edu	37	10	25887861	25887861	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR98	84059	broad.mit.edu	37	5	90021007	90021007	+	Silent	SNP	T	G	G			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR98	84059	broad.mit.edu	37	5	90085636	90085636	+	Nonsense_Mutation	SNP	A	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR98	84059	broad.mit.edu	37	5	90106258	90106258	+	Frame_Shift_Del	DEL	G	-	-			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPX7	2882	broad.mit.edu	37	1	53072521	53072521	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRIN2A	2903	broad.mit.edu	37	16	9943861	9943861	+	Intron	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRIN2B	2904	broad.mit.edu	37	12	14018651	14018651	+	Intron	SNP	T	G	G			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRIP1	23426	broad.mit.edu	37	12	66771142	66771142	+	Intron	SNP	C	G	G			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRIP1	23426	broad.mit.edu	37	12	66800232	66800232	+	Intron	SNP	C	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRM6	2916	broad.mit.edu	37	5	178418345	178418345	+	Intron	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRM8	2918	broad.mit.edu	37	7	126173024	126173024	+	Silent	SNP	T	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GSG1	83445	broad.mit.edu	37	12	13241170	13241170	+	Intron	SNP	T	C	C			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GSTA2	2939	broad.mit.edu	37	6	52622593	52622593	+	Intron	SNP	C	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GSTA4	2941	broad.mit.edu	37	6	52847238	52847238	+	Intron	SNP	C	G	G			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GTPBP4	23560	broad.mit.edu	37	10	1056510	1056510	+	Intron	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GYLTL1B	120071	broad.mit.edu	37	11	45946098	45946098	+	Silent	SNP	C	G	G			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HAAO	23498	broad.mit.edu	37	2	43015605	43015605	+	Intron	SNP	C	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HAO2	51179	broad.mit.edu	37	1	119923353	119923353	+	Intron	SNP	T	C	C			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HAPLN4	404037	broad.mit.edu	37	19	19373596	19373596	+	5'UTR	DEL	G	-	-			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HCK	3055	broad.mit.edu	37	20	30689091	30689091	+	Intron	SNP	C	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HCRT	3060	broad.mit.edu	37	17	40336456	40336456	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HDAC9	9734	broad.mit.edu	37	7	18802027	18802027	+	Intron	SNP	C	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HECTD1	25831	broad.mit.edu	37	14	31642916	31642916	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HECW1	23072	broad.mit.edu	37	7	43506294	43506294	+	Intron	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HEPHL1	341208	broad.mit.edu	37	11	93815724	93815724	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HERC3	8916	broad.mit.edu	37	4	89579484	89579484	+	Intron	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HES1	3280	broad.mit.edu	37	3	193854685	193854685	+	Intron	SNP	G	C	C			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HGF	3082	broad.mit.edu	37	7	81392156	81392157	+	Frame_Shift_Ins	INS	-	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HIF3A	64344	broad.mit.edu	37	19	46834463	46834463	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HIP1	3092	broad.mit.edu	37	7	75203330	75203330	+	Intron	SNP	C	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HIST1H2AJ	8331	broad.mit.edu	37	6	27782408	27782408	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HIST1H2BI	8346	broad.mit.edu	37	6	26273485	26273485	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HIST3H2BB	128312	broad.mit.edu	37	1	228646196	228646196	+	Silent	SNP	C	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HIVEP2	3097	broad.mit.edu	37	6	143092972	143092972	+	Silent	SNP	G	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HLA-DOA	3111	broad.mit.edu	37	6	32975646	32975646	+	Intron	SNP	T	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HMGA2	8091	broad.mit.edu	37	12	66232336	66232336	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HNRNPA0	10949	broad.mit.edu	37	5	137089259	137089259	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HOXA5	3202	broad.mit.edu	37	7	27183196	27183196	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HPGDS	27306	broad.mit.edu	37	4	95223511	95223511	+	Intron	SNP	A	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HS3ST5	222537	broad.mit.edu	37	6	114383749	114383749	+	Intron	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HSD17B4	3295	broad.mit.edu	37	5	118837613	118837613	+	Intron	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HSD17B4	3295	broad.mit.edu	37	5	118877683	118877683	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HSP90AB1	3326	broad.mit.edu	37	6	44221316	44221316	+	Missense_Mutation	SNP	G	C	C	rs76772157	byFrequency;by1000genomes	TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HSPA6	3310	broad.mit.edu	37	1	161495987	161495987	+	Silent	SNP	C	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HTR2C	3358	broad.mit.edu	37	X	114010216	114010216	+	Intron	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HTR3C	170572	broad.mit.edu	37	3	183777831	183777831	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HTRA4	203100	broad.mit.edu	37	8	38832536	38832536	+	Intron	SNP	G	C	C			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HYDIN	54768	broad.mit.edu	37	16	70926379	70926379	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HYDIN	54768	broad.mit.edu	37	16	71007911	71007911	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IBTK	25998	broad.mit.edu	37	6	82882068	82882068	+	Intron	SNP	A	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IFI44L	10964	broad.mit.edu	37	1	79094223	79094223	+	Intron	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IFI44	10561	broad.mit.edu	37	1	79120918	79120918	+	Intron	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IFRD1	3475	broad.mit.edu	37	7	112096994	112096994	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IFT88	8100	broad.mit.edu	37	13	21237562	21237562	+	Intron	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IGDCC4	57722	broad.mit.edu	37	15	65684080	65684080	+	Intron	SNP	C	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IGF1R	3480	broad.mit.edu	37	15	99228799	99228799	+	Intron	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IGF2BP1	10642	broad.mit.edu	37	17	47115536	47115536	+	Silent	SNP	C	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IGSF11	152404	broad.mit.edu	37	3	118623708	118623708	+	Intron	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IGSF3	3321	broad.mit.edu	37	1	117146563	117146563	+	Missense_Mutation	SNP	G	A	A	rs61786578		TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL17RD	54756	broad.mit.edu	37	3	57148729	57148729	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL19	29949	broad.mit.edu	37	1	206972271	206972271	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL20	50604	broad.mit.edu	37	1	207041914	207041914	+	3'UTR	SNP	A	G	G			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL21	59067	broad.mit.edu	37	4	123541904	123541904	+	Intron	DEL	A	-	-	rs138637304	by1000genomes	TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL27RA	9466	broad.mit.edu	37	19	14159684	14159684	+	Intron	SNP	C	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL28B	282617	broad.mit.edu	37	19	39734909	39734909	+	Intron	SNP	C	G	G			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
INF2	64423	broad.mit.edu	37	14	105242190	105242190	+	Intron	SNP	C	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
INHBC	3626	broad.mit.edu	37	12	57828906	57828906	+	Silent	SNP	C	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
INPP4A	3631	broad.mit.edu	37	2	99203983	99203983	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
INTS6	26512	broad.mit.edu	37	13	51952610	51952610	+	Intron	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IPPK	64768	broad.mit.edu	37	9	95432170	95432170	+	Intron	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IQCF2	389123	broad.mit.edu	37	3	51896742	51896742	+	Intron	SNP	A	G	G			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IQGAP2	10788	broad.mit.edu	37	5	75979002	75979002	+	Silent	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IRAK2	3656	broad.mit.edu	37	3	10242074	10242074	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IRAK3	11213	broad.mit.edu	37	12	66583064	66583064	+	5'UTR	SNP	C	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ISL1	3670	broad.mit.edu	37	5	50683298	50683298	+	Intron	SNP	C	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGA1	3672	broad.mit.edu	37	5	52201520	52201520	+	Intron	SNP	A	G	G			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGA1	3672	broad.mit.edu	37	5	52205908	52205908	+	Intron	SNP	G	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITIH5	80760	broad.mit.edu	37	10	7604942	7604942	+	3'UTR	SNP	T	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITPR3	3710	broad.mit.edu	37	6	33652605	33652605	+	Missense_Mutation	SNP	A	C	C			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITPR3	3710	broad.mit.edu	37	6	33661487	33661487	+	Intron	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITSN1	6453	broad.mit.edu	37	21	35256009	35256009	+	Intron	SNP	G	C	C			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IVL	3713	broad.mit.edu	37	1	152883676	152883676	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
JAK1	3716	broad.mit.edu	37	1	65330594	65330594	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
JAK1	3716	broad.mit.edu	37	1	65338902	65338902	+	Intron	SNP	T	C	C			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
JAK3	3718	broad.mit.edu	37	19	17945771	17945771	+	Silent	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KALRN	8997	broad.mit.edu	37	3	124211729	124211729	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNH1	3756	broad.mit.edu	37	1	211035071	211035071	+	Intron	SNP	C	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNN3	3782	broad.mit.edu	37	1	154680544	154680544	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNN3	3782	broad.mit.edu	37	1	154821432	154821432	+	Intron	SNP	C	G	G			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNT2	343450	broad.mit.edu	37	1	196285039	196285039	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNU1	157855	broad.mit.edu	37	8	36662628	36662628	+	Intron	SNP	T	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCTD3	51133	broad.mit.edu	37	1	215793472	215793472	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KDM1B	221656	broad.mit.edu	37	6	18171810	18171810	+	Intron	SNP	C	G	G			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KDM5B	10765	broad.mit.edu	37	1	202710910	202710910	+	Intron	SNP	C	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA0355	9710	broad.mit.edu	37	19	34787463	34787463	+	Intron	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA0776	23376	broad.mit.edu	37	6	97000627	97000627	+	Intron	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA0922	23240	broad.mit.edu	37	4	154510157	154510157	+	Silent	SNP	C	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1244	57221	broad.mit.edu	37	6	138576798	138576798	+	Silent	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1409	57578	broad.mit.edu	37	14	94158302	94158302	+	Intron	SNP	C	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1543	57662	broad.mit.edu	37	19	7671671	7671671	+	Intron	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1549	57670	broad.mit.edu	37	7	138566078	138566078	+	Intron	SNP	C	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1586	57691	broad.mit.edu	37	6	56915638	56915638	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1632	57724	broad.mit.edu	37	18	43437680	43437680	+	Intron	SNP	T	C	C			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1797	54914	broad.mit.edu	37	9	20862468	20862468	+	Intron	SNP	T	C	C			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF17	57576	broad.mit.edu	37	1	20998340	20998340	+	Intron	SNP	C	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF19	124602	broad.mit.edu	37	17	72322560	72322560	+	Intron	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF1B	23095	broad.mit.edu	37	1	10338104	10338104	+	Silent	SNP	C	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF20B	9585	broad.mit.edu	37	10	91528214	91528214	+	Intron	SNP	C	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF20B	9585	broad.mit.edu	37	10	91533861	91533861	+	3'UTR	SNP	A	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF21A	55605	broad.mit.edu	37	12	39733842	39733842	+	Intron	SNP	C	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF3A	11127	broad.mit.edu	37	5	132062049	132062049	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF3C	3797	broad.mit.edu	37	2	26152676	26152676	+	Intron	SNP	G	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIR2DL4	3805	broad.mit.edu	37	19	55315502	55315502	+	Intron	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIR3DL1	3811	broad.mit.edu	37	19	55377077	55377077	+	Intron	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIR3DX1	90011	broad.mit.edu	37	19	55044186	55044186	+	Intron	SNP	C	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIRREL2	84063	broad.mit.edu	37	19	36349172	36349172	+	Intron	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLC2	64837	broad.mit.edu	37	11	66031147	66031147	+	Nonsense_Mutation	SNP	A	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLHL1	57626	broad.mit.edu	37	13	70293521	70293521	+	Silent	SNP	C	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLHL21	9903	broad.mit.edu	37	1	6653360	6653360	+	3'UTR	SNP	G	C	C			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLHL32	114792	broad.mit.edu	37	6	97575456	97575456	+	Intron	SNP	A	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLK3	354	broad.mit.edu	37	19	51358121	51358121	+	5'Flank	SNP	C	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLK3	354	broad.mit.edu	37	19	51361620	51361620	+	Intron	SNP	G	C	C			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLK3	354	broad.mit.edu	37	19	51361684	51361684	+	Intron	SNP	G	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KMO	8564	broad.mit.edu	37	1	241712234	241712234	+	Intron	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KNDC1	85442	broad.mit.edu	37	10	134981686	134981686	+	Intron	SNP	C	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KPNA2	3838	broad.mit.edu	37	17	66039579	66039579	+	Intron	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KPNA5	3841	broad.mit.edu	37	6	117043355	117043355	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KREMEN1	83999	broad.mit.edu	37	22	29538223	29538223	+	Intron	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRI1	65095	broad.mit.edu	37	19	10673395	10673395	+	Intron	SNP	T	G	G			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRT23	25984	broad.mit.edu	37	17	39080837	39080837	+	Intron	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRT72	140807	broad.mit.edu	37	12	52985176	52985176	+	Intron	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRT85	3891	broad.mit.edu	37	12	52758935	52758935	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRTAP12-2	353323	broad.mit.edu	37	21	46086733	46086733	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRTAP13-4	284827	broad.mit.edu	37	21	31802568	31802568	+	5'Flank	SNP	C	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRTAP19-7	337974	broad.mit.edu	37	21	31933578	31933578	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRTAP21-1	337977	broad.mit.edu	37	21	32127565	32127565	+	Silent	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRTAP4-3	85290	broad.mit.edu	37	17	39324424	39324424	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMA2	3908	broad.mit.edu	37	6	129635765	129635765	+	Intron	SNP	G	C	C			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMA2	3908	broad.mit.edu	37	6	129774214	129774214	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMA5	3911	broad.mit.edu	37	20	60910172	60910172	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LANCL2	55915	broad.mit.edu	37	7	55479453	55479453	+	Intron	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LCP2	3937	broad.mit.edu	37	5	169677861	169677861	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LDLR	3949	broad.mit.edu	37	19	11213428	11213428	+	Silent	SNP	G	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LEFTY1	10637	broad.mit.edu	37	1	226076566	226076566	+	Silent	SNP	G	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LGALS9C	654346	broad.mit.edu	37	17	18392259	18392259	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LGI1	9211	broad.mit.edu	37	10	95549825	95549825	+	Intron	SNP	G	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LGR5	8549	broad.mit.edu	37	12	71977206	71977206	+	Intron	SNP	C	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LGTN	1939	broad.mit.edu	37	1	206767041	206767041	+	Silent	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LHCGR	3973	broad.mit.edu	37	2	48921418	48921418	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LHFPL3	375612	broad.mit.edu	37	7	104310075	104310075	+	Intron	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LIG1	3978	broad.mit.edu	37	19	48643258	48643258	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LILRB1	10859	broad.mit.edu	37	19	55144342	55144342	+	Intron	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LILRB1	10859	broad.mit.edu	37	19	55144405	55144405	+	Intron	SNP	C	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LILRB1	10859	broad.mit.edu	37	19	55147065	55147065	+	Intron	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LIM2	3982	broad.mit.edu	37	19	51890754	51890754	+	Intron	SNP	A	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LIX1	167410	broad.mit.edu	37	5	96478365	96478365	+	5'UTR	SNP	T	A	A	rs62624472	by1000genomes	TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LMF2	91289	broad.mit.edu	37	22	50944120	50944120	+	Missense_Mutation	SNP	C	A	A	rs113089468	byFrequency	TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LMX1A	4009	broad.mit.edu	37	1	165324697	165324697	+	Intron	SNP	A	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LNPEP	4012	broad.mit.edu	37	5	96315554	96315554	+	Silent	SNP	C	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC100129055	100129055	broad.mit.edu	37	10	38464953	38464953	+	Intron	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC146481	146481	broad.mit.edu	37	16	34713873	34713873	+	Intron	SNP	T	C	C			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC168474	168474	broad.mit.edu	37	7	64313682	64313682	+	5'UTR	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC200030	200030	broad.mit.edu	37	1	148004823	148004823	+	Intron	SNP	C	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC348926	348926	broad.mit.edu	37	4	3954912	3954912	+	Intron	SNP	G	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC441089	441089	broad.mit.edu	37	5	79647702	79647702	+	RNA	SNP	C	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC55908	55908	broad.mit.edu	37	19	11350393	11350393	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC647288	647288	broad.mit.edu	37	13	75814228	75814228	+	Silent	SNP	A	G	G			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC728190	728190	broad.mit.edu	37	10	88974082	88974082	+	Intron	SNP	C	G	G			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LPAL2	80350	broad.mit.edu	37	6	160903478	160903478	+	Intron	SNP	T	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LPHN2	23266	broad.mit.edu	37	1	81968878	81968878	+	Intron	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LPHN2	23266	broad.mit.edu	37	1	82456358	82456358	+	Silent	SNP	A	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRCH3	84859	broad.mit.edu	37	3	197544201	197544220	+	Intron	DEL	ATGTGTGTGTGTGTGTCTGT	-	-	rs1273552	by1000genomes	TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRIG2	9860	broad.mit.edu	37	1	113661947	113661947	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRIT1	26103	broad.mit.edu	37	10	85992365	85992365	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP1B	53353	broad.mit.edu	37	2	141079435	141079435	+	Intron	SNP	C	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP1B	53353	broad.mit.edu	37	2	141272159	141272159	+	Intron	SNP	A	G	G			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP1B	53353	broad.mit.edu	37	2	141459222	141459222	+	Intron	SNP	A	C	C			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP2BP	55805	broad.mit.edu	37	4	186294187	186294187	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP2	4036	broad.mit.edu	37	2	170063751	170063751	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP2	4036	broad.mit.edu	37	2	170097780	170097780	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP2	4036	broad.mit.edu	37	2	170115485	170115485	+	Intron	SNP	T	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP2	4036	broad.mit.edu	37	2	170148564	170148564	+	Intron	SNP	T	C	C			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC31	79782	broad.mit.edu	37	3	169574747	169574747	+	Intron	SNP	G	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRIQ1	84125	broad.mit.edu	37	12	85446102	85446102	+	Intron	SNP	T	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRK1	79705	broad.mit.edu	37	15	101605612	101605612	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LYST	1130	broad.mit.edu	37	1	235827894	235827894	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LZTR1	8216	broad.mit.edu	37	22	21340155	21340155	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MADD	8567	broad.mit.edu	37	11	47317082	47317082	+	Silent	SNP	A	T	T	rs143711042	by1000genomes	TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAGEB10	139422	broad.mit.edu	37	X	27839660	27839660	+	Silent	SNP	C	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAGEB18	286514	broad.mit.edu	37	X	26158064	26158064	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAGEL2	54551	broad.mit.edu	37	15	23889965	23889965	+	Silent	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAGEL2	54551	broad.mit.edu	37	15	23890368	23890368	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAN1C1	57134	broad.mit.edu	37	1	26110047	26110047	+	Intron	SNP	G	C	C			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAP3K15	389840	broad.mit.edu	37	X	19418911	19418911	+	Intron	SNP	C	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAP3K3	4215	broad.mit.edu	37	17	61768535	61768535	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAP3K5	4217	broad.mit.edu	37	6	136926374	136926374	+	Silent	SNP	C	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAP3K8	1326	broad.mit.edu	37	10	30747105	30747105	+	Silent	SNP	G	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAPRE2	10982	broad.mit.edu	37	18	32677374	32677374	+	Intron	SNP	G	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MARCH5	54708	broad.mit.edu	37	10	94109320	94109320	+	Intron	SNP	A	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MARCO	8685	broad.mit.edu	37	2	119735334	119735334	+	Intron	SNP	C	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MATN2	4147	broad.mit.edu	37	8	98943445	98943446	+	Frame_Shift_Ins	INS	-	T	T	rs2290470	by1000genomes	TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MATN2	4147	broad.mit.edu	37	8	99016120	99016120	+	Intron	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MCCC1	56922	broad.mit.edu	37	3	182810432	182810432	+	Intron	SNP	T	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MCHR2	84539	broad.mit.edu	37	6	100382482	100382482	+	Intron	SNP	C	A	A	rs151013471	by1000genomes	TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MCOLN3	55283	broad.mit.edu	37	1	85485097	85485097	+	Intron	SNP	C	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MDGA2	161357	broad.mit.edu	37	14	47324158	47324158	+	Intron	SNP	T	G	G			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MDH1	4190	broad.mit.edu	37	2	63832432	63832432	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MEAF6	64769	broad.mit.edu	37	1	37959828	37959828	+	Intron	SNP	T	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MED20	9477	broad.mit.edu	37	6	41888847	41888847	+	5'UTR	SNP	C	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MEGF10	84466	broad.mit.edu	37	5	126734329	126734329	+	Intron	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MEGF10	84466	broad.mit.edu	37	5	126776464	126776464	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MEGF8	1954	broad.mit.edu	37	19	42866204	42866204	+	Intron	SNP	T	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
METTL1	4234	broad.mit.edu	37	12	58162892	58162892	+	Nonsense_Mutation	SNP	C	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MFSD6L	162387	broad.mit.edu	37	17	8702465	8702465	+	5'UTR	SNP	C	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MGAM	8972	broad.mit.edu	37	7	141754458	141754458	+	Intron	SNP	C	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MGC42105	167359	broad.mit.edu	37	5	43277447	43277447	+	Intron	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MICAL1	64780	broad.mit.edu	37	6	109769445	109769445	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MIR1208	100302281	broad.mit.edu	37	8	129162374	129162374	+	RNA	SNP	C	G	G			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MIR7-3	407045	broad.mit.edu	37	19	4770765	4770765	+	RNA	SNP	G	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MIR890	100126303	broad.mit.edu	37	X	145076418	145076418	+	5'Flank	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MKRN3	7681	broad.mit.edu	37	15	23811302	23811302	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MLL3	58508	broad.mit.edu	37	7	151970971	151970971	+	Intron	SNP	A	G	G			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MLLT10	8028	broad.mit.edu	37	10	21962822	21962822	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MLLT4	4301	broad.mit.edu	37	6	168370608	168370608	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MMP2	4313	broad.mit.edu	37	16	55517110	55517110	+	Intron	SNP	C	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MOCOS	55034	broad.mit.edu	37	18	33795389	33795389	+	Intron	SNP	A	G	G			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MOCS1	4337	broad.mit.edu	37	6	39883915	39883915	+	Silent	SNP	C	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MOG	4340	broad.mit.edu	37	6	29638178	29638178	+	Intron	SNP	C	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MOG	4340	broad.mit.edu	37	6	29638301	29638301	+	Intron	SNP	G	C	C			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MORC1	27136	broad.mit.edu	37	3	108818390	108818390	+	Intron	SNP	G	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MPPED2	744	broad.mit.edu	37	11	30517091	30517091	+	Intron	SNP	C	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MPZL1	9019	broad.mit.edu	37	1	167741611	167741611	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MRE11A	4361	broad.mit.edu	37	11	94180429	94180429	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MRPL23	6150	broad.mit.edu	37	11	1977312	1977312	+	Intron	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MRPL3	11222	broad.mit.edu	37	3	131208916	131208916	+	Silent	SNP	T	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MRPL9	65005	broad.mit.edu	37	1	151732565	151732565	+	Frame_Shift_Del	DEL	T	-	-			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MRPS36	92259	broad.mit.edu	37	5	68513742	68513742	+	Intron	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MS4A14	84689	broad.mit.edu	37	11	60165297	60165297	+	Intron	SNP	C	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MS4A14	84689	broad.mit.edu	37	11	60182863	60182863	+	Intron	SNP	C	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MSR1	4481	broad.mit.edu	37	8	16001085	16001085	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MST1	4485	broad.mit.edu	37	3	49723949	49723949	+	Intron	SNP	A	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTA2	9219	broad.mit.edu	37	11	62367578	62367578	+	Intron	SNP	G	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTR	4548	broad.mit.edu	37	1	237058851	237058851	+	Splice_Site	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTSS1L	92154	broad.mit.edu	37	16	70698083	70698083	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC13	56667	broad.mit.edu	37	3	124641195	124641195	+	Intron	SNP	G	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC16	94025	broad.mit.edu	37	19	9085589	9085589	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC17	140453	broad.mit.edu	37	7	100676862	100676862	+	Nonsense_Mutation	SNP	C	A	A	rs71530303		TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC17	140453	broad.mit.edu	37	7	100696652	100696652	+	Nonsense_Mutation	SNP	G	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC5B	727897	broad.mit.edu	37	11	1253222	1253222	+	Intron	SNP	C	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC7	4589	broad.mit.edu	37	4	71346405	71346405	+	Intron	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYCBP2	23077	broad.mit.edu	37	13	77748446	77748446	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH10	4628	broad.mit.edu	37	17	8393742	8393742	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH2	4620	broad.mit.edu	37	17	10428440	10428440	+	Intron	SNP	T	C	C			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH7	4625	broad.mit.edu	37	14	23887170	23887170	+	Intron	SNP	A	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH7	4625	broad.mit.edu	37	14	23893969	23893969	+	Intron	SNP	G	C	C			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYLK2	85366	broad.mit.edu	37	20	30408011	30408011	+	Silent	SNP	G	C	C			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO15A	51168	broad.mit.edu	37	17	18058425	18058425	+	Silent	SNP	C	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO16	23026	broad.mit.edu	37	13	109817397	109817397	+	Silent	SNP	C	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO1F	4542	broad.mit.edu	37	19	8601852	8601852	+	Silent	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYOM2	9172	broad.mit.edu	37	8	2000375	2000375	+	Missense_Mutation	SNP	G	T	T	rs138096233	byFrequency	TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYOM3	127294	broad.mit.edu	37	1	24384188	24384188	+	Intron	SNP	C	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYT1L	23040	broad.mit.edu	37	2	1926039	1926039	+	Intron	SNP	C	A	A	rs139126460	by1000genomes	TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYT1	4661	broad.mit.edu	37	20	62871297	62871297	+	Intron	SNP	C	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NAALAD2	10003	broad.mit.edu	37	11	89885637	89885637	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NALCN	259232	broad.mit.edu	37	13	101727162	101727162	+	Intron	SNP	C	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NAPB	63908	broad.mit.edu	37	20	23361779	23361779	+	Intron	SNP	C	G	G			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NAV3	89795	broad.mit.edu	37	12	78592410	78592410	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBEAL1	65065	broad.mit.edu	37	2	204009929	204009929	+	Intron	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBEA	26960	broad.mit.edu	37	13	35731448	35731448	+	Intron	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBPF7	343505	broad.mit.edu	37	1	120377670	120377670	+	Intron	SNP	C	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBPF9	400818	broad.mit.edu	37	1	145139096	145139097	+	Intron	DNP	AG	TT	TT			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBR1	4077	broad.mit.edu	37	17	41341830	41341830	+	Intron	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCAM2	4685	broad.mit.edu	37	21	22658668	22658668	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCAN	1463	broad.mit.edu	37	19	19344697	19344697	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCK1	4690	broad.mit.edu	37	3	136664548	136664548	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCKAP1L	3071	broad.mit.edu	37	12	54925989	54925989	+	Silent	SNP	C	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NDE1	54820	broad.mit.edu	37	16	15785139	15785139	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NDRG4	65009	broad.mit.edu	37	16	58545443	58545443	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NDST4	64579	broad.mit.edu	37	4	115997337	115997337	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NDUFS4	4724	broad.mit.edu	37	5	52942075	52942075	+	Missense_Mutation	SNP	T	G	G			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NEB	4703	broad.mit.edu	37	2	152554264	152554264	+	Intron	SNP	A	G	G			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NEK8	284086	broad.mit.edu	37	17	27065353	27065353	+	Intron	SNP	G	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NEO1	4756	broad.mit.edu	37	15	73415160	73415160	+	Intron	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NEO1	4756	broad.mit.edu	37	15	73468860	73468860	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NETO1	81832	broad.mit.edu	37	18	70461478	70461478	+	Silent	SNP	C	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NFASC	23114	broad.mit.edu	37	1	204985663	204985663	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NFATC4	4776	broad.mit.edu	37	14	24842998	24842998	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NHP2	55651	broad.mit.edu	37	5	177580635	177580635	+	Intron	SNP	C	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NID1	4811	broad.mit.edu	37	1	236192981	236192981	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NID2	22795	broad.mit.edu	37	14	52520714	52520714	+	Intron	SNP	C	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NKAIN2	154215	broad.mit.edu	37	6	124676276	124676276	+	Intron	SNP	C	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLRP11	204801	broad.mit.edu	37	19	56313142	56313142	+	Intron	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLRP13	126204	broad.mit.edu	37	19	56423995	56423995	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLRP13	126204	broad.mit.edu	37	19	56424114	56424114	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLRP2	55655	broad.mit.edu	37	19	55501766	55501766	+	Intron	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLRP4	147945	broad.mit.edu	37	19	56372683	56372683	+	Intron	SNP	C	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLRP5	126206	broad.mit.edu	37	19	56569690	56569690	+	Silent	SNP	C	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NME6	10201	broad.mit.edu	37	3	48337820	48337820	+	Intron	SNP	C	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NOL6	65083	broad.mit.edu	37	9	33462736	33462736	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NOVA2	4858	broad.mit.edu	37	19	46443836	46443836	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NOV	4856	broad.mit.edu	37	8	120429208	120429208	+	Silent	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NOX5	79400	broad.mit.edu	37	15	69315192	69315192	+	Intron	SNP	C	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NOX5	79400	broad.mit.edu	37	15	69329231	69329231	+	Intron	SNP	C	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NR2F1	7025	broad.mit.edu	37	5	92921132	92921132	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRG2	9542	broad.mit.edu	37	5	139232109	139232109	+	Silent	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRXN2	9379	broad.mit.edu	37	11	64436226	64436226	+	Intron	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NSMAF	8439	broad.mit.edu	37	8	59522138	59522138	+	Intron	SNP	C	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NT5DC1	221294	broad.mit.edu	37	6	116429419	116429419	+	Intron	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NTRK3	4916	broad.mit.edu	37	15	88576116	88576116	+	Silent	SNP	C	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NUCB1	4924	broad.mit.edu	37	19	49414548	49414548	+	Intron	SNP	G	C	C			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NUDT1	4521	broad.mit.edu	37	7	2290722	2290722	+	3'UTR	SNP	G	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NUP210L	91181	broad.mit.edu	37	1	154042693	154042694	+	Intron	INS	-	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NUPL1	9818	broad.mit.edu	37	13	25895016	25895016	+	Intron	SNP	A	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NWD1	284434	broad.mit.edu	37	19	16870093	16870093	+	Silent	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OASL	8638	broad.mit.edu	37	12	121469379	121469379	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OC90	729330	broad.mit.edu	37	8	133053259	133053259	+	Intron	SNP	C	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ODZ1	10178	broad.mit.edu	37	X	123785936	123785936	+	Silent	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ODZ2	57451	broad.mit.edu	37	5	167689762	167689762	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ODZ4	26011	broad.mit.edu	37	11	78381572	78381572	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OGFRL1	79627	broad.mit.edu	37	6	72011855	72011855	+	3'UTR	SNP	C	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OIT3	170392	broad.mit.edu	37	10	74677423	74677423	+	Intron	SNP	C	G	G			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ONECUT1	3175	broad.mit.edu	37	15	53080954	53080954	+	Intron	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OPLAH	26873	broad.mit.edu	37	8	145114525	145114525	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OPN1SW	611	broad.mit.edu	37	7	128414501	128414501	+	Intron	SNP	C	G	G			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR10A6	390093	broad.mit.edu	37	11	7949605	7949605	+	Frame_Shift_Del	DEL	C	-	-			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR10G8	219869	broad.mit.edu	37	11	123900162	123900162	+	5'Flank	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR14C36	127066	broad.mit.edu	37	1	248512562	248512562	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2AG2	338755	broad.mit.edu	37	11	6790218	6790218	+	5'Flank	SNP	A	C	C			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2B11	127623	broad.mit.edu	37	1	247615073	247615073	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2C3	81472	broad.mit.edu	37	1	247695285	247695285	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2J2	26707	broad.mit.edu	37	6	29141262	29141262	+	5'Flank	SNP	G	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2L13	284521	broad.mit.edu	37	1	248138168	248138168	+	Intron	SNP	A	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2L13	284521	broad.mit.edu	37	1	248166235	248166235	+	Intron	SNP	C	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2L13	284521	broad.mit.edu	37	1	248185862	248185862	+	Intron	SNP	T	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2M5	127059	broad.mit.edu	37	1	248309178	248309178	+	Silent	SNP	T	C	C			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR3A1	4994	broad.mit.edu	37	17	3195487	3195487	+	Nonsense_Mutation	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4A15	81328	broad.mit.edu	37	11	55135316	55135316	+	5'Flank	SNP	C	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4K17	390436	broad.mit.edu	37	14	20586172	20586172	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR56B1	387748	broad.mit.edu	37	11	5757908	5757908	+	Frame_Shift_Del	DEL	C	-	-			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR56B4	196335	broad.mit.edu	37	11	6129756	6129756	+	Missense_Mutation	SNP	C	T	T	rs58431577	byFrequency;by1000genomes	TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR5B2	390190	broad.mit.edu	37	11	58190697	58190697	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR5D18	219438	broad.mit.edu	37	11	55587917	55587917	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR5H6	79295	broad.mit.edu	37	3	97983469	97983469	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ORC3L	23595	broad.mit.edu	37	6	88299749	88299749	+	5'Flank	SNP	C	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OSBPL10	114884	broad.mit.edu	37	3	31789593	31789593	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OSBPL6	114880	broad.mit.edu	37	2	179201243	179201243	+	Intron	SNP	C	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OTX1	5013	broad.mit.edu	37	2	63281369	63281369	+	Intron	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OVOL1	5017	broad.mit.edu	37	11	65561659	65561659	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OXSM	54995	broad.mit.edu	37	3	25833576	25833576	+	Intron	SNP	C	G	G			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
P4HTM	54681	broad.mit.edu	37	3	49040084	49040084	+	Intron	SNP	G	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
P704P	641455	broad.mit.edu	37	14	20019987	20019987	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PABPC1	26986	broad.mit.edu	37	8	101717279	101717279	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAICS	10606	broad.mit.edu	37	4	57325799	57325799	+	3'UTR	SNP	G	C	C			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAK3	5063	broad.mit.edu	37	X	110416338	110416338	+	Intron	SNP	A	G	G			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PALLD	23022	broad.mit.edu	37	4	169633102	169633102	+	Intron	SNP	A	C	C			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PANK1	53354	broad.mit.edu	37	10	91352811	91352811	+	Intron	SNP	C	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAPD7	11044	broad.mit.edu	37	5	6748401	6748401	+	Intron	SNP	G	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAPL	390928	broad.mit.edu	37	19	39589822	39589823	+	Intron	DEL	GC	-	-			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PARD3B	117583	broad.mit.edu	37	2	206023618	206023618	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PARK2	5071	broad.mit.edu	37	6	162989785	162989785	+	Intron	DEL	G	-	-			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PARN	5073	broad.mit.edu	37	16	14693769	14693769	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH15	65217	broad.mit.edu	37	10	55570538	55570538	+	Intron	SNP	C	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH15	65217	broad.mit.edu	37	10	55700796	55700796	+	Intron	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHA1	56147	broad.mit.edu	37	5	140167592	140167592	+	Missense_Mutation	SNP	A	C	C			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHB10	56126	broad.mit.edu	37	5	140572514	140572514	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHB12	56124	broad.mit.edu	37	5	140590240	140590240	+	Silent	SNP	C	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHB1	29930	broad.mit.edu	37	5	140432991	140432991	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHGB7	56099	broad.mit.edu	37	5	140798221	140798221	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCTP	58488	broad.mit.edu	37	17	53850947	53850947	+	Intron	SNP	T	C	C			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDCD1	5133	broad.mit.edu	37	2	242794882	242794882	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE1A	5136	broad.mit.edu	37	2	183104919	183104919	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE3A	5139	broad.mit.edu	37	12	20705451	20705451	+	Intron	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE3B	5140	broad.mit.edu	37	11	14665857	14665857	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE3B	5140	broad.mit.edu	37	11	14865565	14865565	+	Frame_Shift_Del	DEL	C	-	-			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE4DIP	9659	broad.mit.edu	37	1	144852366	144852366	+	3'UTR	SNP	T	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE6A	5145	broad.mit.edu	37	5	149286877	149286877	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDZD9	255762	broad.mit.edu	37	16	21999819	21999819	+	Intron	SNP	G	C	C			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDZRN3	23024	broad.mit.edu	37	3	73433528	73433528	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDZRN4	29951	broad.mit.edu	37	12	41903762	41903762	+	Intron	SNP	T	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDZRN4	29951	broad.mit.edu	37	12	41966201	41966201	+	Silent	SNP	C	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PEG3	5178	broad.mit.edu	37	19	57328635	57328635	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PER1	5187	broad.mit.edu	37	17	8045883	8045883	+	Intron	SNP	G	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PGM5P2	595135	broad.mit.edu	37	9	69117767	69117767	+	RNA	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PHACTR4	65979	broad.mit.edu	37	1	28733891	28733891	+	Intron	SNP	A	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PID1	55022	broad.mit.edu	37	2	230020584	230020584	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIGK	10026	broad.mit.edu	37	1	77685129	77685129	+	5'UTR	SNP	C	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIGM	93183	broad.mit.edu	37	1	160000240	160000240	+	3'UTR	SNP	G	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIK3R3	8503	broad.mit.edu	37	1	46570715	46570715	+	Intron	SNP	C	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PILRA	29992	broad.mit.edu	37	7	99997700	99997700	+	3'UTR	SNP	T	C	C			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIM1	5292	broad.mit.edu	37	6	37138707	37138707	+	Intron	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PION	54103	broad.mit.edu	37	7	76984659	76984659	+	Silent	SNP	G	C	C			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PKHD1L1	93035	broad.mit.edu	37	8	110402670	110402670	+	Intron	SNP	T	G	G			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PKHD1	5314	broad.mit.edu	37	6	51613225	51613225	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PKN3	29941	broad.mit.edu	37	9	131475465	131475465	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLA2G4E	123745	broad.mit.edu	37	15	42302338	42302338	+	Frame_Shift_Del	DEL	A	-	-	rs28736629		TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLBD2	196463	broad.mit.edu	37	12	113824843	113824843	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLCH2	9651	broad.mit.edu	37	1	2428372	2428372	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLEC	5339	broad.mit.edu	37	8	144995163	144995163	+	Silent	SNP	C	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLEKHA7	144100	broad.mit.edu	37	11	16838565	16838565	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLEKHB2	55041	broad.mit.edu	37	2	131960335	131960335	+	Intron	SNP	C	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLEKHG1	57480	broad.mit.edu	37	6	151149537	151149537	+	Intron	SNP	C	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLEKHM3	389072	broad.mit.edu	37	2	208841296	208841296	+	Intron	SNP	G	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLXNB2	23654	broad.mit.edu	37	22	50721207	50721207	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PML	5371	broad.mit.edu	37	15	74337262	74337262	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PMM1	5372	broad.mit.edu	37	22	41974850	41974850	+	Silent	SNP	C	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PNLIPRP2	5408	broad.mit.edu	37	10	118386475	118386475	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PNLIPRP3	119548	broad.mit.edu	37	10	118236276	118236276	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PNLIP	5406	broad.mit.edu	37	10	118315205	118315205	+	Intron	SNP	C	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POLG	5428	broad.mit.edu	37	15	89870507	89870507	+	Nonsense_Mutation	SNP	C	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POLQ	10721	broad.mit.edu	37	3	121186188	121186188	+	Intron	SNP	T	C	C			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POM121L12	285877	broad.mit.edu	37	7	53103588	53103588	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POTED	317754	broad.mit.edu	37	21	14983113	14983113	+	Intron	SNP	G	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POTEH	23784	broad.mit.edu	37	22	16266929	16266929	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPM1D	8493	broad.mit.edu	37	17	58678173	58678173	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPP1R1B	84152	broad.mit.edu	37	17	37792213	37792213	+	3'UTR	SNP	C	G	G			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPP1R2P3	153743	broad.mit.edu	37	5	156277531	156277531	+	5'Flank	SNP	A	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPP2R2B	5521	broad.mit.edu	37	5	146236139	146236139	+	Intron	SNP	C	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPP4R1	9989	broad.mit.edu	37	18	9588969	9588969	+	Intron	SNP	G	C	C			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRDM11	56981	broad.mit.edu	37	11	45117337	45117337	+	5'UTR	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRDM15	63977	broad.mit.edu	37	21	43279791	43279791	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRDM9	56979	broad.mit.edu	37	5	23527761	23527761	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRKCE	5581	broad.mit.edu	37	2	46211818	46211818	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRKCG	5582	broad.mit.edu	37	19	54394781	54394781	+	Intron	SNP	C	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRLR	5618	broad.mit.edu	37	5	35081556	35081556	+	Intron	SNP	C	G	G			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRPF19	27339	broad.mit.edu	37	11	60671055	60671055	+	Intron	SNP	C	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRPF39	55015	broad.mit.edu	37	14	45565408	45565408	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRSS48	345062	broad.mit.edu	37	4	152212601	152212601	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRX	57716	broad.mit.edu	37	19	40902381	40902381	+	Silent	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSD3	23362	broad.mit.edu	37	8	18432723	18432723	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSG11	5680	broad.mit.edu	37	19	43519365	43519365	+	Silent	SNP	A	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSG4	5672	broad.mit.edu	37	19	43709732	43709732	+	5'UTR	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSG5	5673	broad.mit.edu	37	19	43674440	43674440	+	Intron	SNP	T	C	C			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSG6	5675	broad.mit.edu	37	19	43414573	43414573	+	Intron	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSG8	440533	broad.mit.edu	37	19	43262633	43262633	+	Intron	SNP	A	G	G			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSG9	5678	broad.mit.edu	37	19	43765853	43765853	+	Intron	SNP	G	C	C			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSMB9	5698	broad.mit.edu	37	6	32823998	32823998	+	Intron	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTCH1	5727	broad.mit.edu	37	9	98238999	98238999	+	Intron	SNP	C	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTCHD2	57540	broad.mit.edu	37	1	11590022	11590022	+	Intron	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRC	5788	broad.mit.edu	37	1	198677262	198677262	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRD	5789	broad.mit.edu	37	9	8449907	8449907	+	Intron	SNP	T	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRD	5789	broad.mit.edu	37	9	8521415	8521415	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PUM1	9698	broad.mit.edu	37	1	31468271	31468271	+	Intron	SNP	A	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PXDN	7837	broad.mit.edu	37	2	1653092	1653092	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PYGL	5836	broad.mit.edu	37	14	51378963	51378963	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
QRFPR	84109	broad.mit.edu	37	4	122250803	122250803	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
R3HDML	140902	broad.mit.edu	37	20	42973925	42973925	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAB3GAP2	25782	broad.mit.edu	37	1	220332740	220332740	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAB5C	5878	broad.mit.edu	37	17	40278776	40278776	+	Missense_Mutation	SNP	T	G	G			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAP1A	5906	broad.mit.edu	37	1	112106622	112106622	+	Intron	DEL	C	-	-			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAP2A	5911	broad.mit.edu	37	13	98116801	98116801	+	3'UTR	SNP	A	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAPGEF4	11069	broad.mit.edu	37	2	173855582	173855582	+	Silent	SNP	T	C	C			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAPGEF4	11069	broad.mit.edu	37	2	173891808	173891808	+	Splice_Site	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAPGEF6	51735	broad.mit.edu	37	5	130897670	130897670	+	Splice_Site	SNP	C	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAPH1	65059	broad.mit.edu	37	2	204302960	204302960	+	3'UTR	SNP	T	C	C			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RASGRF1	5923	broad.mit.edu	37	15	79292010	79292010	+	Intron	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RASGRP1	10125	broad.mit.edu	37	15	38800034	38800034	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RASGRP1	10125	broad.mit.edu	37	15	38800056	38800056	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RASSF4	83937	broad.mit.edu	37	10	45480135	45480135	+	Intron	SNP	C	G	G			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RB1	5925	broad.mit.edu	37	13	48916851	48916851	+	Splice_Site	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RBM12	10137	broad.mit.edu	37	20	34240756	34240756	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RBP2	5948	broad.mit.edu	37	3	139173624	139173624	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RCHY1	25898	broad.mit.edu	37	4	76416999	76416999	+	Intron	SNP	A	G	G			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RCL1	10171	broad.mit.edu	37	9	4833008	4833008	+	Intron	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
REC8	9985	broad.mit.edu	37	14	24647746	24647746	+	Intron	SNP	G	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RELN	5649	broad.mit.edu	37	7	103276694	103276694	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RELN	5649	broad.mit.edu	37	7	103294653	103294653	+	Splice_Site	SNP	C	G	G			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RFWD3	55159	broad.mit.edu	37	16	74683183	74683183	+	Intron	SNP	C	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RFX1	5989	broad.mit.edu	37	19	14080874	14080874	+	Silent	SNP	G	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RFX6	222546	broad.mit.edu	37	6	117246757	117246757	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RGPD3	653489	broad.mit.edu	37	2	107041781	107041781	+	Intron	SNP	A	G	G			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RGS18	64407	broad.mit.edu	37	1	192128254	192128254	+	Intron	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RGS22	26166	broad.mit.edu	37	8	100974593	100974593	+	Intron	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RGS6	9628	broad.mit.edu	37	14	73007325	73007325	+	Intron	SNP	C	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RGS6	9628	broad.mit.edu	37	14	73029268	73029268	+	3'UTR	SNP	G	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RHOBTB1	9886	broad.mit.edu	37	10	62631940	62631940	+	Intron	SNP	C	G	G			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RIT2	6014	broad.mit.edu	37	18	40554090	40554090	+	Silent	SNP	G	C	C			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RND3	390	broad.mit.edu	37	2	151328054	151328054	+	Intron	SNP	C	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNF149	284996	broad.mit.edu	37	2	101924963	101924963	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNF157	114804	broad.mit.edu	37	17	74162444	74162444	+	Intron	SNP	C	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNF17	56163	broad.mit.edu	37	13	25373689	25373689	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNF213	57674	broad.mit.edu	37	17	78320202	78320202	+	Silent	SNP	C	T	T	rs143580800	byFrequency	TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNF5P1	286140	broad.mit.edu	37	8	38458430	38458430	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPL38	6169	broad.mit.edu	37	17	72200013	72200013	+	Intron	SNP	G	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPN2	6185	broad.mit.edu	37	20	35835961	35835961	+	Intron	SNP	C	G	G			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPS6KA1	6195	broad.mit.edu	37	1	26881587	26881587	+	Intron	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPTOR	57521	broad.mit.edu	37	17	78811858	78811858	+	Intron	SNP	G	C	C			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RRAGD	58528	broad.mit.edu	37	6	90090184	90090184	+	Intron	SNP	G	C	C			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RSAD2	91543	broad.mit.edu	37	2	7035938	7035938	+	Silent	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RSPH6A	81492	broad.mit.edu	37	19	46318261	46318261	+	Silent	SNP	T	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RSRC2	65117	broad.mit.edu	37	12	123011232	123011232	+	Intron	SNP	C	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RTTN	25914	broad.mit.edu	37	18	67794780	67794780	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RUNX1T1	862	broad.mit.edu	37	8	93026648	93026648	+	Intron	SNP	A	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RUNX1T1	862	broad.mit.edu	37	8	93026719	93026719	+	Intron	SNP	A	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RWDD1	51389	broad.mit.edu	37	6	116912127	116912127	+	Intron	SNP	A	G	G			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RXFP1	59350	broad.mit.edu	37	4	159529243	159529243	+	Intron	SNP	G	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR1	6261	broad.mit.edu	37	19	39007937	39007937	+	Intron	SNP	C	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR1	6261	broad.mit.edu	37	19	39008786	39008786	+	Intron	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR1	6261	broad.mit.edu	37	19	39037100	39037100	+	Nonsense_Mutation	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR2	6262	broad.mit.edu	37	1	237540586	237540586	+	Intron	SNP	G	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR2	6262	broad.mit.edu	37	1	237656285	237656285	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR2	6262	broad.mit.edu	37	1	237711738	237711738	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR3	6263	broad.mit.edu	37	15	33842510	33842510	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR3	6263	broad.mit.edu	37	15	33993116	33993116	+	Intron	SNP	T	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR3	6263	broad.mit.edu	37	15	34042406	34042406	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR3	6263	broad.mit.edu	37	15	34110892	34110892	+	Intron	SNP	A	C	C			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SAMD9L	219285	broad.mit.edu	37	7	92762932	92762932	+	Frame_Shift_Del	DEL	C	-	-			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SARDH	1757	broad.mit.edu	37	9	136573445	136573446	+	Missense_Mutation	DNP	CA	AG	AG			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SART1	9092	broad.mit.edu	37	11	65745041	65745041	+	Silent	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SART3	9733	broad.mit.edu	37	12	108954775	108954775	+	Silent	SNP	C	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SBF1	6305	broad.mit.edu	37	22	50898324	50898325	+	Intron	INS	-	G	G			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SBF1	6305	broad.mit.edu	37	22	50898331	50898331	+	Intron	SNP	G	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCARA5	286133	broad.mit.edu	37	8	27823991	27823991	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCEL	8796	broad.mit.edu	37	13	78142560	78142560	+	Intron	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCEL	8796	broad.mit.edu	37	13	78146255	78146255	+	Intron	SNP	A	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCN11A	11280	broad.mit.edu	37	3	38926899	38926899	+	Intron	SNP	C	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCN1A	6323	broad.mit.edu	37	2	166872012	166872012	+	Intron	SNP	C	G	G			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCN3A	6328	broad.mit.edu	37	2	165948941	165948941	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCN4B	6330	broad.mit.edu	37	11	118007675	118007675	+	3'UTR	DEL	G	-	-			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCN4B	6330	broad.mit.edu	37	11	118012169	118012169	+	Intron	SNP	C	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCN5A	6331	broad.mit.edu	37	3	38622698	38622698	+	Silent	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCNN1G	6340	broad.mit.edu	37	16	23197657	23197657	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SDR16C5	195814	broad.mit.edu	37	8	57218037	57218037	+	Intron	SNP	T	C	C	rs142036934	by1000genomes	TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEC23B	10483	broad.mit.edu	37	20	18508067	18508067	+	Intron	SNP	C	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEC61B	10952	broad.mit.edu	37	9	101990179	101990179	+	Splice_Site	SNP	A	G	G			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SELE	6401	broad.mit.edu	37	1	169698390	169698391	+	Nonsense_Mutation	DNP	CC	AT	AT			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SELE	6401	broad.mit.edu	37	1	169698684	169698684	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SELL	6402	broad.mit.edu	37	1	169680598	169680598	+	Intron	SNP	A	G	G			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEMA5A	9037	broad.mit.edu	37	5	9108286	9108286	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEMA5B	54437	broad.mit.edu	37	3	122667529	122667529	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEPN1	57190	broad.mit.edu	37	1	26142277	26142277	+	3'UTR	SNP	C	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEPT12	124404	broad.mit.edu	37	16	4834196	4834196	+	Intron	SNP	T	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SERPINA10	51156	broad.mit.edu	37	14	94756524	94756524	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SERPINA6	866	broad.mit.edu	37	14	94776356	94776356	+	Intron	SNP	G	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SETBP1	26040	broad.mit.edu	37	18	42529998	42529998	+	Silent	SNP	C	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SETD2	29072	broad.mit.edu	37	3	47098321	47098321	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SETD2	29072	broad.mit.edu	37	3	47103476	47103476	+	Intron	SNP	T	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SETX	23064	broad.mit.edu	37	9	135172287	135172287	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEZ6L	23544	broad.mit.edu	37	22	26688759	26688759	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SF3B4	10262	broad.mit.edu	37	1	149897745	149897745	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SGCD	6444	broad.mit.edu	37	5	156186253	156186253	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SGK494	124923	broad.mit.edu	37	17	26941253	26941253	+	5'Flank	SNP	C	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SH2D3C	10044	broad.mit.edu	37	9	130509376	130509376	+	Intron	SNP	C	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SH2D4B	387694	broad.mit.edu	37	10	82403749	82403749	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SH3KBP1	30011	broad.mit.edu	37	X	19663436	19663436	+	Intron	SNP	T	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SHQ1	55164	broad.mit.edu	37	3	72891313	72891313	+	Intron	SNP	T	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SHROOM4	57477	broad.mit.edu	37	X	50351111	50351111	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SIGLEC10	89790	broad.mit.edu	37	19	51920674	51920674	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SIGLEC7	27036	broad.mit.edu	37	19	51647614	51647614	+	Intron	SNP	T	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SIGLEC9	27180	broad.mit.edu	37	19	51628959	51628959	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SIN3B	23309	broad.mit.edu	37	19	16981866	16981866	+	Intron	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SIX4	51804	broad.mit.edu	37	14	61190693	61190693	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SI	6476	broad.mit.edu	37	3	164780197	164780197	+	Nonsense_Mutation	SNP	C	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SKI	6497	broad.mit.edu	37	1	2234292	2234292	+	Intron	SNP	G	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLAIN2	57606	broad.mit.edu	37	4	48412941	48412941	+	Intron	SNP	G	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC10A2	6555	broad.mit.edu	37	13	103701839	103701839	+	Intron	SNP	T	C	C			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC12A1	6557	broad.mit.edu	37	15	48500073	48500073	+	Nonsense_Mutation	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC14A2	8170	broad.mit.edu	37	18	43262529	43262529	+	3'UTR	SNP	C	G	G			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC17A6	57084	broad.mit.edu	37	11	22380855	22380855	+	Intron	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC18A2	6571	broad.mit.edu	37	10	119015219	119015219	+	Intron	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC1A6	6511	broad.mit.edu	37	19	15074958	15074959	+	Intron	INS	-	C	C			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC22A2	6582	broad.mit.edu	37	6	160677820	160677820	+	Intron	SNP	C	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC25A23	79085	broad.mit.edu	37	19	6454458	6454458	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC25A28	81894	broad.mit.edu	37	10	101370759	101370759	+	Silent	SNP	C	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC25A41	284427	broad.mit.edu	37	19	6430113	6430113	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC26A7	115111	broad.mit.edu	37	8	92379031	92379031	+	Intron	SNP	C	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC26A8	116369	broad.mit.edu	37	6	35923158	35923158	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC27A6	28965	broad.mit.edu	37	5	128368829	128368829	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC29A4	222962	broad.mit.edu	37	7	5330276	5330276	+	Intron	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC30A6	55676	broad.mit.edu	37	2	32418022	32418022	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC34A3	142680	broad.mit.edu	37	9	140128067	140128067	+	Intron	SNP	G	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC44A5	204962	broad.mit.edu	37	1	75679363	75679363	+	Intron	SNP	T	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC45A4	57210	broad.mit.edu	37	8	142228515	142228515	+	Silent	SNP	C	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC4A3	6508	broad.mit.edu	37	2	220504305	220504305	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC6A19	340024	broad.mit.edu	37	5	1214210	1214210	+	Intron	SNP	C	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC6A20	54716	broad.mit.edu	37	3	45823727	45823727	+	Intron	SNP	C	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC6A5	9152	broad.mit.edu	37	11	20629280	20629280	+	Intron	SNP	C	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC7A11	23657	broad.mit.edu	37	4	139103436	139103436	+	Intron	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC8A2	6543	broad.mit.edu	37	19	47940789	47940789	+	Silent	SNP	C	G	G			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC9A11	284525	broad.mit.edu	37	1	173569258	173569258	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC9A5	6553	broad.mit.edu	37	16	67298893	67298893	+	Intron	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC9A8	23315	broad.mit.edu	37	20	48466249	48466249	+	Intron	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLCO2A1	6578	broad.mit.edu	37	3	133674019	133674019	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLIT1	6585	broad.mit.edu	37	10	98774051	98774051	+	Intron	SNP	G	C	C			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLIT3	6586	broad.mit.edu	37	5	168127701	168127701	+	Intron	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLIT3	6586	broad.mit.edu	37	5	168179857	168179857	+	Intron	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLIT3	6586	broad.mit.edu	37	5	168187998	168187998	+	Intron	DEL	C	-	-			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLIT3	6586	broad.mit.edu	37	5	168310446	168310446	+	Intron	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMC1A	8243	broad.mit.edu	37	X	53407465	53407465	+	Intron	SNP	C	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMC1B	27127	broad.mit.edu	37	22	45804819	45804819	+	Intron	SNP	G	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMG5	23381	broad.mit.edu	37	1	156244514	156244514	+	Intron	SNP	C	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMOC1	64093	broad.mit.edu	37	14	70420343	70420343	+	Intron	SNP	T	C	C			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMOC2	64094	broad.mit.edu	37	6	169051476	169051476	+	Intron	SNP	C	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNAPC1	6617	broad.mit.edu	37	14	62233507	62233507	+	Intron	SNP	T	C	C			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNORD114-17	767595	broad.mit.edu	37	14	101441001	101441001	+	5'Flank	SNP	A	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNORD116-4	100033416	broad.mit.edu	37	15	25318205	25318205	+	Intron	SNP	C	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNORD116-4	100033416	broad.mit.edu	37	15	25349840	25349840	+	Intron	SNP	T	C	C			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNRPG	6637	broad.mit.edu	37	2	70508813	70508813	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNRPN	6638	broad.mit.edu	37	15	25219719	25219719	+	Intron	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNX1	6642	broad.mit.edu	37	15	64423929	64423929	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNX2	6643	broad.mit.edu	37	5	122163148	122163148	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SOAT1	6646	broad.mit.edu	37	1	179320569	179320569	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SORBS1	10580	broad.mit.edu	37	10	97101199	97101199	+	Intron	SNP	G	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SORD	6652	broad.mit.edu	37	15	45360276	45360276	+	Intron	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SORD	6652	broad.mit.edu	37	15	45361251	45361251	+	Splice_Site	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SOX13	9580	broad.mit.edu	37	1	204082127	204082127	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPANXN1	494118	broad.mit.edu	37	X	144337425	144337425	+	3'UTR	SNP	C	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPDYE3	441272	broad.mit.edu	37	7	99913244	99913244	+	Intron	SNP	C	G	G			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPDYE7P	441251	broad.mit.edu	37	7	72334721	72334721	+	RNA	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPEG	10290	broad.mit.edu	37	2	220338130	220338130	+	Intron	SNP	C	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPEG	10290	broad.mit.edu	37	2	220342497	220342497	+	Nonsense_Mutation	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPPL2A	84888	broad.mit.edu	37	15	51014416	51014416	+	Intron	SNP	A	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPRR2A	6700	broad.mit.edu	37	1	153028923	153028923	+	3'UTR	SNP	A	G	G			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPRYD5	84767	broad.mit.edu	37	11	55657301	55657301	+	Intron	SNP	G	C	C			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPTBN1	6711	broad.mit.edu	37	2	54844783	54844783	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPTBN1	6711	broad.mit.edu	37	2	54864845	54864845	+	Intron	SNP	A	C	C			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPTBN4	57731	broad.mit.edu	37	19	40996038	40996038	+	Silent	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPTLC3	55304	broad.mit.edu	37	20	13106962	13106962	+	Intron	SNP	T	G	G			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SRCRB4D	136853	broad.mit.edu	37	7	76024651	76024651	+	Intron	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SS18	6760	broad.mit.edu	37	18	23637534	23637534	+	Intron	SNP	T	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ST18	9705	broad.mit.edu	37	8	53045518	53045518	+	Intron	SNP	C	G	G			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ST3GAL4	6484	broad.mit.edu	37	11	126276453	126276453	+	Splice_Site	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ST6GAL2	84620	broad.mit.edu	37	2	107423025	107423025	+	3'UTR	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ST7	7982	broad.mit.edu	37	7	116830916	116830916	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STAB2	55576	broad.mit.edu	37	12	104125238	104125238	+	Intron	SNP	C	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STAC2	342667	broad.mit.edu	37	17	37369237	37369237	+	Intron	SNP	C	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STAMBP	10617	broad.mit.edu	37	2	74072054	74072054	+	Intron	SNP	C	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STAT5A	6776	broad.mit.edu	37	17	40460390	40460390	+	Intron	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STK10	6793	broad.mit.edu	37	5	171509412	171509412	+	Missense_Mutation	SNP	C	A	A	rs143931389		TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STK39	27347	broad.mit.edu	37	2	168812166	168812166	+	Intron	SNP	C	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STMN4	81551	broad.mit.edu	37	8	27098873	27098873	+	Intron	SNP	G	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STMN4	81551	broad.mit.edu	37	8	27099860	27099860	+	Intron	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STON2	85439	broad.mit.edu	37	14	81837198	81837198	+	Intron	SNP	T	G	G			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STOX2	56977	broad.mit.edu	37	4	184938371	184938371	+	Silent	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SULF1	23213	broad.mit.edu	37	8	70515666	70515666	+	Intron	SNP	G	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SULF1	23213	broad.mit.edu	37	8	70533314	70533314	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SUN3	256979	broad.mit.edu	37	7	48046777	48046777	+	Silent	SNP	G	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SUPT5H	6829	broad.mit.edu	37	19	39962931	39962931	+	Intron	SNP	C	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SV2A	9900	broad.mit.edu	37	1	149877629	149877629	+	Intron	SNP	C	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYCP2L	221711	broad.mit.edu	37	6	10927691	10927691	+	Intron	SNP	C	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYMPK	8189	broad.mit.edu	37	19	46345509	46345509	+	Silent	SNP	C	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYNE2	23224	broad.mit.edu	37	14	64600696	64600696	+	Intron	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TACC2	10579	broad.mit.edu	37	10	123846990	123846990	+	Nonsense_Mutation	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TACC2	10579	broad.mit.edu	37	10	123969848	123969848	+	Intron	SNP	A	G	G			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAF4	6874	broad.mit.edu	37	20	60581826	60581826	+	Intron	SNP	G	C	C			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAF6	6878	broad.mit.edu	37	7	99706238	99706238	+	Intron	SNP	T	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAOK3	51347	broad.mit.edu	37	12	118599693	118599693	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAP2	6891	broad.mit.edu	37	6	32805380	32805380	+	Frame_Shift_Del	DEL	C	-	-			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAS2R19	259294	broad.mit.edu	37	12	11175115	11175115	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAS2R41	259287	broad.mit.edu	37	7	143175182	143175182	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBC1D21	161514	broad.mit.edu	37	15	74181397	74181397	+	Intron	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBL1X	6907	broad.mit.edu	37	X	9677195	9677195	+	Intron	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBX22	50945	broad.mit.edu	37	X	79282178	79282178	+	Intron	SNP	A	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBX22	50945	broad.mit.edu	37	X	79285952	79285952	+	Intron	SNP	T	G	G			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBX2	6909	broad.mit.edu	37	17	59479175	59479175	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBX3	6926	broad.mit.edu	37	12	115112301	115112301	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBX5	6910	broad.mit.edu	37	12	114804258	114804258	+	Intron	SNP	C	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TCERG1L	256536	broad.mit.edu	37	10	132891338	132891338	+	3'UTR	SNP	C	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TDRD3	81550	broad.mit.edu	37	13	61083814	61083814	+	Intron	SNP	G	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TDRD3	81550	broad.mit.edu	37	13	61083900	61083900	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TDRD3	81550	broad.mit.edu	37	13	61083927	61083927	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TDRD6	221400	broad.mit.edu	37	6	46663671	46663671	+	Nonsense_Mutation	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TDRD7	23424	broad.mit.edu	37	9	100243134	100243134	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TECTB	6975	broad.mit.edu	37	10	114045787	114045787	+	Intron	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TEKT3	64518	broad.mit.edu	37	17	15211785	15211785	+	Intron	SNP	C	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TEK	7010	broad.mit.edu	37	9	27197413	27197413	+	Silent	SNP	T	C	C			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TEX2	55852	broad.mit.edu	37	17	62265924	62265924	+	Intron	SNP	C	G	G			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TFAP2B	7021	broad.mit.edu	37	6	50810718	50810718	+	Intron	SNP	C	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TF	7018	broad.mit.edu	37	3	133486935	133486935	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TGFB2	7042	broad.mit.edu	37	1	218607550	218607550	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TG	7038	broad.mit.edu	37	8	133900711	133900711	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
THSD7A	221981	broad.mit.edu	37	7	11441642	11441642	+	Intron	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
THSD7A	221981	broad.mit.edu	37	7	11676677	11676677	+	Intron	SNP	G	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TIMM44	10469	broad.mit.edu	37	19	7998678	7998678	+	Intron	SNP	G	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TLE3	7090	broad.mit.edu	37	15	70342448	70342448	+	Silent	SNP	C	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TLL1	7092	broad.mit.edu	37	4	166986903	166986903	+	Silent	SNP	C	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TLL2	7093	broad.mit.edu	37	10	98165220	98165220	+	Intron	SNP	T	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TLN2	83660	broad.mit.edu	37	15	62948149	62948150	+	Missense_Mutation	DNP	GG	AT	AT			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TLN2	83660	broad.mit.edu	37	15	62989969	62989969	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TLR2	7097	broad.mit.edu	37	4	154626008	154626008	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TLR6	10333	broad.mit.edu	37	4	38829072	38829072	+	Nonsense_Mutation	SNP	C	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TM9SF1	10548	broad.mit.edu	37	14	24659658	24659658	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMBIM6	7009	broad.mit.edu	37	12	50135996	50135996	+	Intron	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMC2	117532	broad.mit.edu	37	20	2591006	2591006	+	Intron	SNP	G	C	C			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMCC1	23023	broad.mit.edu	37	3	129389291	129389291	+	Nonsense_Mutation	SNP	C	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM131	23505	broad.mit.edu	37	2	98378537	98378537	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM132D	121256	broad.mit.edu	37	12	129559374	129559374	+	Silent	SNP	C	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM132D	121256	broad.mit.edu	37	12	129566381	129566381	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM132D	121256	broad.mit.edu	37	12	130184440	130184440	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM173	340061	broad.mit.edu	37	5	138858259	138858259	+	Intron	SNP	C	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM175	84286	broad.mit.edu	37	4	946032	946032	+	Intron	SNP	G	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM181	57583	broad.mit.edu	37	6	159031754	159031754	+	Intron	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM2	23670	broad.mit.edu	37	9	74332845	74332845	+	Intron	SNP	C	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM30A	55754	broad.mit.edu	37	6	75968498	75968498	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMOD1	7111	broad.mit.edu	37	9	100315641	100315641	+	Missense_Mutation	SNP	C	A	A	rs148848308		TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMPRSS11A	339967	broad.mit.edu	37	4	68812310	68812310	+	Intron	SNP	C	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMPRSS11F	389208	broad.mit.edu	37	4	68956206	68956206	+	Intron	SNP	C	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNFRSF1B	7133	broad.mit.edu	37	1	12266694	12266694	+	Intron	SNP	C	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNFSF15	9966	broad.mit.edu	37	9	117567977	117567977	+	Intron	SNP	T	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNKS	8658	broad.mit.edu	37	8	9538452	9538452	+	Intron	SNP	C	G	G			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNNT1	7138	broad.mit.edu	37	19	55658246	55658246	+	Intron	SNP	C	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNNT2	7139	broad.mit.edu	37	1	201334414	201334414	+	Nonsense_Mutation	SNP	C	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNR	7143	broad.mit.edu	37	1	175355120	175355120	+	Intron	SNP	C	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNR	7143	broad.mit.edu	37	1	175360325	175360325	+	Intron	SNP	C	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNS1	7145	broad.mit.edu	37	2	218674926	218674926	+	Intron	SNP	G	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNS3	64759	broad.mit.edu	37	7	47440037	47440037	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TP53	7157	broad.mit.edu	37	17	7577531	7577532	+	Missense_Mutation	DNP	GG	AA	AA	rs67026029		TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPCN1	53373	broad.mit.edu	37	12	113716075	113716075	+	Intron	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPCN2	219931	broad.mit.edu	37	11	68846295	68846295	+	Intron	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPD52L2	7165	broad.mit.edu	37	20	62521253	62521253	+	Silent	SNP	A	T	T	rs149447981	byFrequency	TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPO	7173	broad.mit.edu	37	2	1481057	1481057	+	Missense_Mutation	SNP	T	G	G			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPP2	7174	broad.mit.edu	37	13	103271309	103271309	+	Intron	SNP	A	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPPP2	122664	broad.mit.edu	37	14	21498833	21498833	+	Silent	SNP	C	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPTE	7179	broad.mit.edu	37	21	10906886	10906886	+	3'UTR	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPTE	7179	broad.mit.edu	37	21	10934087	10934087	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPTE	7179	broad.mit.edu	37	21	10944951	10944952	+	Intron	DNP	TG	AT	AT			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRAF3	7187	broad.mit.edu	37	14	103369758	103369758	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRAPPC10	7109	broad.mit.edu	37	21	45504114	45504114	+	Nonsense_Mutation	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TREML4	285852	broad.mit.edu	37	6	41197840	41197840	+	Silent	SNP	C	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRHDE	29953	broad.mit.edu	37	12	72825668	72825668	+	Intron	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRHDE	29953	broad.mit.edu	37	12	72936116	72936116	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRHDE	29953	broad.mit.edu	37	12	72936124	72936124	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIM10	10107	broad.mit.edu	37	6	30121679	30121679	+	3'UTR	SNP	C	G	G			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIM46	80128	broad.mit.edu	37	1	155152076	155152076	+	Intron	SNP	C	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPA1	8989	broad.mit.edu	37	8	72945894	72945894	+	Silent	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPC3	7222	broad.mit.edu	37	4	122825509	122825509	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPC4	7223	broad.mit.edu	37	13	38320545	38320545	+	Silent	SNP	G	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPM3	80036	broad.mit.edu	37	9	73424736	73424736	+	Intron	SNP	C	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPV5	56302	broad.mit.edu	37	7	142622574	142622575	+	Intron	DNP	CC	AT	AT			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPV5	56302	broad.mit.edu	37	7	142625165	142625165	+	Intron	SNP	C	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPV5	56302	broad.mit.edu	37	7	142626705	142626705	+	Intron	SNP	T	G	G			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRRAP	8295	broad.mit.edu	37	7	98557026	98557026	+	Silent	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TSC22D4	81628	broad.mit.edu	37	7	100065313	100065313	+	Intron	SNP	T	C	C			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TSHR	7253	broad.mit.edu	37	14	81606238	81606238	+	Intron	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TSHZ1	10194	broad.mit.edu	37	18	72999246	72999247	+	Frame_Shift_Ins	INS	-	C	C			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TSHZ2	128553	broad.mit.edu	37	20	51872703	51872703	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TSHZ3	57616	broad.mit.edu	37	19	31768280	31768280	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TSPAN12	23554	broad.mit.edu	37	7	120446688	120446688	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TSPAN14	81619	broad.mit.edu	37	10	82275878	82275878	+	Intron	SNP	C	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTC12	54970	broad.mit.edu	37	11	113194102	113194102	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTC21A	199223	broad.mit.edu	37	3	39162658	39162658	+	Silent	SNP	G	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTC39C	125488	broad.mit.edu	37	18	21703677	21703677	+	Intron	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTF2	8458	broad.mit.edu	37	1	117619206	117619206	+	Intron	SNP	G	T	T	rs116746820	by1000genomes	TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179484542	179484542	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TUBGCP2	10844	broad.mit.edu	37	10	135098867	135098867	+	Intron	SNP	T	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TUFT1	7286	broad.mit.edu	37	1	151534745	151534745	+	Intron	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TXNL4A	10907	broad.mit.edu	37	18	77737560	77737560	+	Intron	SNP	C	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
U2AF1L4	199746	broad.mit.edu	37	19	36233706	36233706	+	Intron	SNP	T	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBE2NL	389898	broad.mit.edu	37	X	142967530	142967530	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBQLN1	29979	broad.mit.edu	37	9	86278707	86278707	+	Intron	SNP	T	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBR2	23304	broad.mit.edu	37	6	42650894	42650894	+	Intron	SNP	G	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UGCG	7357	broad.mit.edu	37	9	114694390	114694390	+	Intron	SNP	A	C	C			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UGT1A10	54575	broad.mit.edu	37	2	234545533	234545533	+	Missense_Mutation	SNP	C	T	T	rs145610800		TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UGT1A5	54579	broad.mit.edu	37	2	234676544	234676544	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UGT1A8	54576	broad.mit.edu	37	2	234590523	234590523	+	Intron	DEL	C	-	-			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UHRF1BP1L	23074	broad.mit.edu	37	12	100431674	100431674	+	Intron	SNP	C	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UMODL1	89766	broad.mit.edu	37	21	43546920	43546920	+	Intron	SNP	A	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UNC13A	23025	broad.mit.edu	37	19	17738861	17738861	+	Intron	SNP	T	C	C			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UNC45B	146862	broad.mit.edu	37	17	33495200	33495200	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UNC45B	146862	broad.mit.edu	37	17	33501226	33501226	+	Intron	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UNC5C	8633	broad.mit.edu	37	4	96222767	96222767	+	Silent	SNP	C	T	T	rs139673541	byFrequency	TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UNC93A	54346	broad.mit.edu	37	6	167728843	167728843	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USF2	7392	broad.mit.edu	37	19	35769793	35769793	+	Intron	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USH2A	7399	broad.mit.edu	37	1	216497703	216497703	+	Intron	SNP	G	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USH2A	7399	broad.mit.edu	37	1	216538182	216538182	+	Intron	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP32	84669	broad.mit.edu	37	17	58270219	58270219	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP33	23032	broad.mit.edu	37	1	78181454	78181454	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP33	23032	broad.mit.edu	37	1	78183488	78183488	+	Intron	SNP	C	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP36	57602	broad.mit.edu	37	17	76802278	76802278	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP5	8078	broad.mit.edu	37	12	6965284	6965284	+	Silent	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UTP20	27340	broad.mit.edu	37	12	101767525	101767525	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UTRN	7402	broad.mit.edu	37	6	145157245	145157245	+	Intron	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	38172506	38172506	+	IGR	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	42681216	42681216	+	IGR	DEL	T	-	-			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	45738504	45738504	+	IGR	SNP	G	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	79897452	79897452	+	IGR	SNP	T	C	C			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	86535596	86535596	+	IGR	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	93427199	93427199	+	IGR	SNP	C	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	104993916	104993916	+	IGR	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	115932324	115932324	+	IGR	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	48486280	48486280	+	IGR	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	49867206	49867206	+	IGR	SNP	G	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	51394060	51394060	+	IGR	SNP	C	G	G			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	51435988	51435989	+	IGR	INS	-	A	A	rs150033484	by1000genomes	TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	51484274	51484274	+	IGR	SNP	T	G	G			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	56098769	56098769	+	IGR	SNP	C	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	56280610	56280610	+	IGR	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	6016099	6016099	+	IGR	SNP	C	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	90848605	90848605	+	IGR	SNP	C	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	93732279	93732279	+	IGR	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	98437386	98437386	+	IGR	SNP	G	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	100834464	100834464	+	IGR	SNP	T	C	C			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	130719745	130719745	+	IGR	DEL	G	-	-			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	30378396	30378396	+	IGR	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	56775946	56775946	+	IGR	DEL	G	-	-			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	7338706	7338706	+	IGR	SNP	A	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	88214474	88214474	+	IGR	SNP	C	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	93429028	93429028	+	IGR	SNP	T	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	98079504	98079504	+	IGR	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	67841251	67841251	+	IGR	SNP	C	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	71158353	71158353	+	IGR	SNP	C	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	87871567	87871567	+	IGR	SNP	C	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	90644236	90644236	+	IGR	SNP	C	G	G			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	19475771	19475771	+	IGR	SNP	T	G	G			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	20138345	20138345	+	IGR	SNP	C	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	20265278	20265278	+	IGR	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	44065026	44065026	+	IGR	SNP	C	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	44546720	44546720	+	IGR	SNP	G	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	45330993	45330993	+	IGR	SNP	A	G	G			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	20092928	20092928	+	IGR	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	22448573	22448573	+	IGR	SNP	G	C	C			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	22472813	22472814	+	IGR	DNP	GG	TT	TT			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	22483399	22483399	+	IGR	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	22780830	22780830	+	IGR	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	31116805	31116805	+	IGR	SNP	T	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	31129032	31129032	+	IGR	SNP	G	C	C			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	45131759	45131759	+	IGR	SNP	C	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	45507882	45507883	+	IGR	INS	-	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	49017832	49017832	+	IGR	SNP	C	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	84773374	84773374	+	IGR	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	33404777	33404777	+	IGR	SNP	C	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	25351599	25351600	+	IGR	DNP	AA	TT	TT			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	25409560	25409560	+	IGR	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	39421903	39421903	+	IGR	SNP	G	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	39432208	39432208	+	IGR	SNP	G	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	44910859	44910859	+	IGR	SNP	C	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	51759357	51759357	+	IGR	SNP	C	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	51834841	51834841	+	IGR	SNP	C	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	62223963	62223963	+	IGR	SNP	T	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	68237666	68237666	+	IGR	SNP	A	G	G			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	13140374	13140374	+	IGR	SNP	G	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	14201258	14201258	+	IGR	SNP	C	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	14378625	14378626	+	IGR	DNP	CT	AA	AA			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	14631744	14631744	+	IGR	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	14868044	14868044	+	IGR	SNP	A	G	G			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	43664087	43664087	+	IGR	SNP	G	C	C			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	57678116	57678116	+	IGR	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	58089227	58089227	+	IGR	SNP	C	G	G			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	60109646	60109646	+	IGR	SNP	C	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	60149814	60149814	+	IGR	SNP	A	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	11867849	11867849	+	IGR	SNP	A	G	G			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	18142861	18142861	+	IGR	SNP	G	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	20413502	20413502	+	IGR	SNP	T	C	C			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	20679857	20679857	+	IGR	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	20874375	20874375	+	IGR	SNP	G	C	C			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	22498772	22498772	+	IGR	SNP	C	G	G			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	22793019	22793019	+	IGR	SNP	A	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	23185844	23185844	+	IGR	SNP	C	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	36988893	36988893	+	IGR	SNP	C	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	43835675	43835675	+	IGR	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	47330184	47330184	+	IGR	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	9204886	9204886	+	IGR	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	101598766	101598766	+	IGR	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	104469464	104469464	+	IGR	SNP	G	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	104615824	104615824	+	IGR	SNP	C	G	G			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	119157573	119157573	+	IGR	SNP	T	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	149090101	149090101	+	IGR	SNP	A	G	G			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	149103035	149103035	+	IGR	SNP	C	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	149105987	149105987	+	IGR	SNP	C	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	157044038	157044038	+	IGR	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	157679168	157679168	+	IGR	SNP	C	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	164326455	164326455	+	IGR	SNP	G	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	170339392	170339392	+	IGR	SNP	C	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	196826814	196826814	+	IGR	SNP	G	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	201948046	201948046	+	IGR	SNP	C	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	224762773	224762773	+	IGR	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	229825215	229825215	+	IGR	SNP	C	G	G			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	244558455	244558456	+	IGR	DNP	GT	AG	AG			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	47963561	47963562	+	IGR	INS	-	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	50871212	50871212	+	IGR	SNP	C	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	71126601	71126601	+	IGR	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	79987179	79987179	+	IGR	SNP	A	G	G			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	23017336	23017336	+	IGR	SNP	C	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	29449487	29449487	+	IGR	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	48345816	48345816	+	IGR	SNP	T	C	C			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	10862806	10862806	+	IGR	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	11181780	11181781	+	IGR	DNP	GG	TT	TT			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	11181788	11181788	+	IGR	SNP	C	G	G			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	14916580	14916580	+	IGR	SNP	C	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	22	16123407	16123407	+	IGR	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	22	16402181	16402181	+	IGR	SNP	G	C	C			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	22	17063620	17063620	+	IGR	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	22	34986066	34986066	+	IGR	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	101042346	101042346	+	IGR	SNP	C	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	126580934	126580934	+	IGR	SNP	T	C	C			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	133020546	133020546	+	IGR	SNP	C	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	13555104	13555104	+	IGR	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	140426316	140426317	+	IGR	DNP	CC	AA	AA			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	182559585	182559585	+	IGR	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	189092528	189092528	+	IGR	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	207284584	207284584	+	IGR	SNP	C	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	207284586	207284586	+	IGR	SNP	C	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	226857604	226857604	+	IGR	SNP	T	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	34065295	34065295	+	IGR	SNP	C	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	41384468	41384468	+	IGR	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	48167147	48167147	+	IGR	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	58479682	58479682	+	IGR	SNP	T	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	91790832	91790832	+	IGR	SNP	T	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	96240967	96240967	+	IGR	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	107046972	107046972	+	IGR	SNP	G	C	C			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	114998165	114998165	+	IGR	SNP	C	G	G			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	117134457	117134457	+	IGR	SNP	C	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	12830023	12830023	+	IGR	SNP	C	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	132107314	132107314	+	IGR	SNP	T	C	C			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	136739428	136739428	+	IGR	SNP	C	G	G			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	137599291	137599291	+	IGR	SNP	G	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	14615199	14615199	+	IGR	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	14616227	14616227	+	IGR	SNP	C	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	15183693	15183693	+	IGR	DEL	T	-	-			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	161048031	161048031	+	IGR	SNP	C	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	169621989	169621989	+	IGR	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	186418568	186418568	+	IGR	SNP	C	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	186640223	186640223	+	IGR	SNP	C	G	G			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	22420913	22420913	+	IGR	SNP	G	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	22946488	22946488	+	IGR	SNP	A	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	44567213	44567213	+	IGR	DEL	G	-	-			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	5121791	5121791	+	IGR	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	76852658	76852658	+	IGR	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	87100142	87100142	+	IGR	SNP	T	C	C			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	96069260	96069260	+	IGR	SNP	G	C	C			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	98189438	98189438	+	IGR	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	189659728	189659728	+	IGR	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	63682763	63682763	+	IGR	SNP	C	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	69578286	69578286	+	IGR	SNP	C	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	89449035	89449035	+	IGR	SNP	C	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	124144778	124144778	+	IGR	SNP	C	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	154491660	154491660	+	IGR	SNP	C	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	23304294	23304294	+	IGR	SNP	C	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	25909604	25909604	+	IGR	SNP	C	G	G			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	25911095	25911095	+	IGR	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	75672815	75672815	+	IGR	SNP	A	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	96705275	96705275	+	IGR	SNP	G	C	C			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	97549616	97549616	+	IGR	SNP	C	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	98016484	98016484	+	IGR	SNP	A	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	106114621	106114621	+	IGR	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	112683999	112683999	+	IGR	SNP	C	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	113544519	113544519	+	IGR	SNP	T	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	114218467	114218467	+	IGR	SNP	C	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	27491572	27491572	+	IGR	SNP	G	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	27798951	27798951	+	IGR	SNP	G	C	C			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	27978636	27978636	+	IGR	SNP	C	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	29769362	29769362	+	IGR	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	42467659	42467659	+	IGR	SNP	G	C	C			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	50825373	50825374	+	IGR	DNP	CA	AT	AT			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	57841781	57841781	+	IGR	SNP	A	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	100783676	100783676	+	IGR	SNP	C	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	10490958	10490958	+	IGR	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	143816213	143816213	+	IGR	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	156426531	156426531	+	IGR	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	18002120	18002120	+	IGR	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	27531595	27531595	+	IGR	SNP	C	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	36007798	36007798	+	IGR	SNP	A	G	G			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	53931191	53931191	+	IGR	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	55659633	55659633	+	IGR	SNP	C	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	56356081	56356081	+	IGR	SNP	A	C	C			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	56356254	56356254	+	IGR	SNP	C	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	57268588	57268588	+	IGR	SNP	G	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	61969034	61969034	+	IGR	SNP	C	G	G	rs57497683		TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	63353563	63353563	+	IGR	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	93544369	93544369	+	IGR	SNP	C	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	98083553	98083553	+	IGR	SNP	C	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	111821818	111821818	+	IGR	SNP	C	G	G			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	36845770	36845770	+	IGR	SNP	C	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	4930361	4930361	+	IGR	SNP	C	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	61818915	61818915	+	IGR	DEL	C	-	-			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	61851435	61851435	+	IGR	SNP	T	C	C			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	63056482	63056482	+	IGR	SNP	C	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	73121223	73121223	+	IGR	SNP	C	A	A	rs142489771	by1000genomes	TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	77515529	77515529	+	IGR	SNP	T	C	C			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	83204652	83204652	+	IGR	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	92922095	92922095	+	IGR	SNP	C	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	92922453	92922453	+	IGR	SNP	C	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	93156483	93156483	+	IGR	SNP	C	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	98636556	98636556	+	IGR	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	2900751	2900751	+	IGR	SNP	C	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	34917323	34917323	+	IGR	SNP	C	G	G			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	43400267	43400267	+	IGR	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	43600491	43600491	+	IGR	SNP	C	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	44067700	44067700	+	IGR	SNP	A	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	44148350	44148350	+	IGR	SNP	C	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	67334229	67334229	+	IGR	SNP	C	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	68357157	68357157	+	IGR	SNP	T	C	C			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	69499182	69499182	+	IGR	SNP	G	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	78017397	78017397	+	IGR	SNP	C	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	84672982	84672982	+	IGR	SNP	C	G	G			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	88401139	88401140	+	IGR	INS	-	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	106296910	106296910	+	IGR	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	112766191	112766191	+	IGR	SNP	A	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	144712091	144712091	+	IGR	SNP	T	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	40750007	40750007	+	IGR	SNP	T	C	C			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	44335298	44335298	+	IGR	SNP	C	G	G			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	52637694	52637694	+	IGR	DEL	G	-	-			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	68394256	68394256	+	IGR	SNP	C	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	68705404	68705404	+	IGR	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	74758308	74758308	+	IGR	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	84011024	84011024	+	IGR	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	8949191	8949191	+	IGR	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	Y	13478310	13478310	+	IGR	SNP	G	C	C			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	Y	9860053	9860053	+	IGR	SNP	C	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VANGL1	81839	broad.mit.edu	37	1	116202106	116202106	+	Intron	SNP	G	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VCAN	1462	broad.mit.edu	37	5	82834200	82834200	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VCAN	1462	broad.mit.edu	37	5	82875805	82875805	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VIPR1	7433	broad.mit.edu	37	3	42576999	42576999	+	Intron	SNP	C	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VIPR2	7434	broad.mit.edu	37	7	158851291	158851291	+	Intron	SNP	C	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VIP	7432	broad.mit.edu	37	6	153078309	153078309	+	3'UTR	SNP	A	G	G			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VPS13B	157680	broad.mit.edu	37	8	100711664	100711664	+	Intron	SNP	C	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VPS13C	54832	broad.mit.edu	37	15	62165362	62165362	+	Intron	SNP	C	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VPS13D	55187	broad.mit.edu	37	1	12304475	12304475	+	Silent	SNP	C	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VPS26A	9559	broad.mit.edu	37	10	70917684	70917684	+	Intron	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VPS37D	155382	broad.mit.edu	37	7	73085416	73085416	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VSIG4	11326	broad.mit.edu	37	X	65242095	65242095	+	3'UTR	SNP	T	G	G			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VSX1	30813	broad.mit.edu	37	20	25056781	25056781	+	3'UTR	SNP	A	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VWA3B	200403	broad.mit.edu	37	2	98846489	98846489	+	Intron	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR11	55717	broad.mit.edu	37	10	122643308	122643308	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR20	91833	broad.mit.edu	37	14	102676267	102676267	+	3'UTR	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR55	54853	broad.mit.edu	37	5	140048960	140048960	+	Silent	SNP	C	G	G			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR70	55100	broad.mit.edu	37	5	37381788	37381788	+	Splice_Site	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WIPI2	26100	broad.mit.edu	37	7	5269190	5269190	+	Intron	SNP	G	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WSB1	26118	broad.mit.edu	37	17	25630530	25630530	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XDH	7498	broad.mit.edu	37	2	31611180	31611180	+	Intron	SNP	T	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XIRP2	129446	broad.mit.edu	37	2	168067310	168067310	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XIRP2	129446	broad.mit.edu	37	2	168101776	168101776	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XRCC4	7518	broad.mit.edu	37	5	82576365	82576365	+	Intron	SNP	C	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
YARS	8565	broad.mit.edu	37	1	33263345	33263345	+	Intron	SNP	C	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZBED1	9189	broad.mit.edu	37	X	2408890	2408890	+	Intron	SNP	G	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZBED4	9889	broad.mit.edu	37	22	50278348	50278348	+	Silent	SNP	G	T	T	rs143242906		TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZBTB47	92999	broad.mit.edu	37	3	42703210	42703210	+	Intron	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZCCHC11	23318	broad.mit.edu	37	1	52926896	52926896	+	Splice_Site	SNP	C	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZCCHC2	54877	broad.mit.edu	37	18	60241246	60241246	+	Intron	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZEB1	6935	broad.mit.edu	37	10	31610340	31610340	+	Intron	SNP	T	C	C			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZEB2	9839	broad.mit.edu	37	2	145156031	145156031	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZFPM2	23414	broad.mit.edu	37	8	106646455	106646455	+	Intron	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZFYVE1	53349	broad.mit.edu	37	14	73442491	73442491	+	Intron	SNP	G	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZIC1	7545	broad.mit.edu	37	3	147128400	147128400	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZIC5	85416	broad.mit.edu	37	13	100622616	100622616	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF133	7692	broad.mit.edu	37	20	18297071	18297071	+	Nonsense_Mutation	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF141	7700	broad.mit.edu	37	4	337570	337570	+	Splice_Site	SNP	G	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF143	7702	broad.mit.edu	37	11	9517965	9517965	+	Intron	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF208	7757	broad.mit.edu	37	19	22155984	22155984	+	Missense_Mutation	SNP	A	G	G	rs34025466		TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF232	7775	broad.mit.edu	37	17	5012586	5012586	+	Intron	SNP	C	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF257	113835	broad.mit.edu	37	19	22257726	22257726	+	Intron	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF268	10795	broad.mit.edu	37	12	133764456	133764456	+	Splice_Site	SNP	A	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF354C	30832	broad.mit.edu	37	5	178505712	178505712	+	Silent	SNP	A	G	G			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF425	155054	broad.mit.edu	37	7	148801676	148801676	+	Silent	SNP	C	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF492	57615	broad.mit.edu	37	19	22838537	22838537	+	Intron	SNP	C	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF502	91392	broad.mit.edu	37	3	44751961	44751961	+	5'Flank	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF527	84503	broad.mit.edu	37	19	37879596	37879596	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF536	9745	broad.mit.edu	37	19	30935852	30935852	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF595	152687	broad.mit.edu	37	4	53463	53463	+	Intron	SNP	A	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF606	80095	broad.mit.edu	37	19	58511942	58511942	+	Intron	SNP	C	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF610	162963	broad.mit.edu	37	19	52852623	52852623	+	Intron	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF639	51193	broad.mit.edu	37	3	179046186	179046186	+	Intron	SNP	A	G	G			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF653	115950	broad.mit.edu	37	19	11608828	11608828	+	Intron	SNP	C	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF781	163115	broad.mit.edu	37	19	38184462	38184462	+	5'Flank	SNP	C	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF7	7553	broad.mit.edu	37	8	146068327	146068327	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF804A	91752	broad.mit.edu	37	2	185798332	185798332	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF804A	91752	broad.mit.edu	37	2	185802533	185802533	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNRF4	148066	broad.mit.edu	37	19	5455442	5455442	+	5'UTR	SNP	A	G	G			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZSCAN5A	79149	broad.mit.edu	37	19	56757807	56757807	+	Intron	SNP	C	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZSCAN5B	342933	broad.mit.edu	37	19	56701605	56701605	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZW10	9183	broad.mit.edu	37	11	113607342	113607343	+	Missense_Mutation	DNP	CG	GA	GA			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZZEF1	23140	broad.mit.edu	37	17	4045901	4045901	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	30982588	30982588	+	Intron	SNP	G	C	C			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	102702721	102702721	+	RNA	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	30938475	30938475	+	RNA	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	58763425	58763425	+	Intron	SNP	G	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	64660195	64660195	+	Intron	SNP	C	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	98849344	98849344	+	3'UTR	SNP	C	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	22409354	22409354	+	Intron	SNP	G	C	C			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	22670531	22670531	+	Intron	SNP	C	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	22938501	22938501	+	Intron	SNP	C	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	23020867	23020867	+	RNA	SNP	C	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	66479890	66479890	+	Silent	SNP	G	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	23605773	23605773	+	5'Flank	SNP	A	T	T	rs660225		TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	76084980	76084980	+	5'Flank	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	91574797	91574797	+	Intron	SNP	T	C	C			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	28550067	28550067	+	Intron	SNP	T	C	C			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	25033101	25033101	+	Intron	SNP	C	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	22780047	22780047	+	Intron	DEL	G	-	-			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	22782083	22782083	+	Intron	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	22782096	22782096	+	Intron	SNP	G	C	C			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	9801949	9801949	+	Intron	SNP	A	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	159336358	159336358	+	Intron	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	105011948	105011948	+	Intron	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	133066896	133066896	+	RNA	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	133076150	133076150	+	Intron	SNP	G	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	62373641	62373641	+	Intron	SNP	G	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	89156777	89156777	+	RNA	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	90091940	90091940	+	Intron	SNP	C	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	91678900	91678900	+	5'Flank	SNP	G	C	C			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	91679100	91679100	+	RNA	DEL	C	-	-			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	95558407	95558407	+	RNA	SNP	A	G	G	rs5006801		TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	144832607	144832607	+	5'Flank	SNP	C	G	G			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	164026183	164026183	+	Intron	SNP	C	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	17354438	17354438	+	RNA	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	24170596	24170596	+	Intron	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	124116609	124116609	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	142111330	142111330	+	Intron	SNP	T	C	C	rs146745800	by1000genomes	TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	142168646	142168646	+	Intron	SNP	C	T	T	rs35534131		TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	142379103	142379103	+	Intron	SNP	C	A	A			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	143174846	143174846	+	Intron	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	43817992	43817992	+	Intron	SNP	C	G	G			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	43861031	43861031	+	RNA	SNP	C	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	135999224	135999224	+	Intron	SNP	C	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	135999269	135999269	+	Intron	SNP	C	G	G			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	51150029	51150029	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
