Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer
A1CF	29974	broad.mit.edu	37	10	52580476	52580476	+	Intron	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
A1CF	29974	broad.mit.edu	37	10	52603893	52603893	+	Intron	SNP	A	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
A2BP1	54715	broad.mit.edu	37	16	7568444	7568444	+	Intron	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
A2BP1	54715	broad.mit.edu	37	16	7714987	7714987	+	Intron	SNP	G	T	T	rs77347896	by1000genomes	TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
A2BP1	54715	broad.mit.edu	37	16	7760514	7760514	+	Intron	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
A2M	2	broad.mit.edu	37	12	9225139	9225139	+	Intron	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AAK1	22848	broad.mit.edu	37	2	69783969	69783969	+	Intron	SNP	C	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AARS	16	broad.mit.edu	37	16	70299344	70299344	+	Intron	SNP	A	C	C			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCA10	10349	broad.mit.edu	37	17	67161197	67161198	+	Missense_Mutation	DNP	CC	AT	AT			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCA13	154664	broad.mit.edu	37	7	48258959	48258959	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCA13	154664	broad.mit.edu	37	7	48450284	48450284	+	Intron	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCA5	23461	broad.mit.edu	37	17	67249889	67249889	+	Intron	SNP	A	C	C			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCA7	10347	broad.mit.edu	37	19	1056364	1056364	+	Silent	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCB10	23456	broad.mit.edu	37	1	229657378	229657378	+	Frame_Shift_Del	DEL	C	-	-			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCB11	8647	broad.mit.edu	37	2	169791994	169791994	+	Intron	SNP	T	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCB5	340273	broad.mit.edu	37	7	20738036	20738036	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCB5	340273	broad.mit.edu	37	7	20793064	20793064	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCB8	11194	broad.mit.edu	37	7	150731593	150731593	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCB9	23457	broad.mit.edu	37	12	123428991	123428991	+	Missense_Mutation	SNP	C	A	A	rs147318444		TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCC5	10057	broad.mit.edu	37	3	183646660	183646660	+	Intron	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCC9	10060	broad.mit.edu	37	12	22086820	22086820	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCF3	55324	broad.mit.edu	37	3	183904545	183904545	+	Intron	SNP	C	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCG1	9619	broad.mit.edu	37	21	43645891	43645891	+	Silent	SNP	A	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCG4	64137	broad.mit.edu	37	11	119029459	119029459	+	Intron	SNP	G	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCG8	64241	broad.mit.edu	37	2	44099139	44099139	+	Missense_Mutation	SNP	G	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABHD5	51099	broad.mit.edu	37	3	43744035	43744035	+	Silent	SNP	A	G	G			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABL2	27	broad.mit.edu	37	1	179077507	179077507	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACAN	176	broad.mit.edu	37	15	89400832	89400832	+	Silent	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACCN4	55515	broad.mit.edu	37	2	220397568	220397568	+	Intron	SNP	G	C	C			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACCN5	51802	broad.mit.edu	37	4	156760101	156760101	+	Intron	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACER1	125981	broad.mit.edu	37	19	6309595	6309595	+	Intron	SNP	T	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACER1	125981	broad.mit.edu	37	19	6312305	6312305	+	Intron	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACSL3	2181	broad.mit.edu	37	2	223806189	223806190	+	Intron	INS	-	T	T	rs142404540	by1000genomes	TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACSS1	84532	broad.mit.edu	37	20	24988421	24988421	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACTL9	284382	broad.mit.edu	37	19	8807769	8807769	+	3'UTR	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACTN2	88	broad.mit.edu	37	1	236924413	236924413	+	Silent	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACTN2	88	broad.mit.edu	37	1	236924444	236924444	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACVR1B	91	broad.mit.edu	37	12	52380697	52380697	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM19	8728	broad.mit.edu	37	5	156915444	156915444	+	Silent	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM19	8728	broad.mit.edu	37	5	156997941	156997941	+	Missense_Mutation	SNP	G	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM21P1	145241	broad.mit.edu	37	14	70714035	70714035	+	5'UTR	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM6	8755	broad.mit.edu	37	14	106320525	106320525	+	RNA	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM6	8755	broad.mit.edu	37	14	106733485	106733485	+	Intron	SNP	T	G	G			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM6	8755	broad.mit.edu	37	14	106743795	106743795	+	Intron	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM6	8755	broad.mit.edu	37	14	106758048	106758048	+	RNA	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM9	8754	broad.mit.edu	37	8	38913229	38913229	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS12	81792	broad.mit.edu	37	5	33527362	33527362	+	Silent	SNP	G	C	C			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS13	11093	broad.mit.edu	37	9	136302803	136302803	+	Intron	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS13	11093	broad.mit.edu	37	9	136303560	136303560	+	Intron	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS15	170689	broad.mit.edu	37	11	130340918	130340918	+	Silent	SNP	C	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS15	170689	broad.mit.edu	37	11	130342836	130342836	+	Intron	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS16	170690	broad.mit.edu	37	5	5319161	5319161	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS18	170692	broad.mit.edu	37	16	77396106	77396106	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS4	9507	broad.mit.edu	37	1	161165915	161165915	+	Intron	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS5	11096	broad.mit.edu	37	21	28306945	28306945	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS9	56999	broad.mit.edu	37	3	64547231	64547231	+	Intron	SNP	T	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTSL3	57188	broad.mit.edu	37	15	84611675	84611675	+	Silent	SNP	G	C	C			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADARB2	105	broad.mit.edu	37	10	1279755	1279755	+	Missense_Mutation	SNP	A	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADCK1	57143	broad.mit.edu	37	14	78399723	78399723	+	Missense_Mutation	SNP	G	C	C			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADCY2	108	broad.mit.edu	37	5	7698566	7698566	+	Intron	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADCY4	196883	broad.mit.edu	37	14	24800522	24800522	+	Missense_Mutation	SNP	C	A	A	rs148797686		TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADCY7	113	broad.mit.edu	37	16	50326809	50326809	+	Intron	SNP	C	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADCY8	114	broad.mit.edu	37	8	131848481	131848481	+	Intron	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADHFE1	137872	broad.mit.edu	37	8	67361160	67361160	+	Missense_Mutation	SNP	A	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADNP2	22850	broad.mit.edu	37	18	77896229	77896229	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADORA1	134	broad.mit.edu	37	1	203134389	203134389	+	Silent	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADPGK	83440	broad.mit.edu	37	15	73067446	73067446	+	Intron	SNP	G	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AGAP3	116988	broad.mit.edu	37	7	150839456	150839456	+	Intron	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AGBL2	79841	broad.mit.edu	37	11	47689131	47689131	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AGXT2	64902	broad.mit.edu	37	5	35014095	35014095	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AGXT	189	broad.mit.edu	37	2	241812330	241812330	+	Intron	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AHCY	191	broad.mit.edu	37	20	32873372	32873372	+	Silent	SNP	C	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AHI1	54806	broad.mit.edu	37	6	135679257	135679257	+	Intron	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AHNAK2	113146	broad.mit.edu	37	14	105413236	105413236	+	Missense_Mutation	SNP	G	C	C			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AHNAK2	113146	broad.mit.edu	37	14	105416310	105416310	+	Silent	SNP	G	C	C			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AHNAK2	113146	broad.mit.edu	37	14	105418992	105418992	+	Silent	SNP	C	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AHRR	57491	broad.mit.edu	37	5	434078	434078	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AKAP9	10142	broad.mit.edu	37	7	91687422	91687422	+	Intron	SNP	T	C	C			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AKAP9	10142	broad.mit.edu	37	7	91687664	91687664	+	Intron	SNP	A	G	G			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AKR1C2	1646	broad.mit.edu	37	10	5041540	5041540	+	Intron	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AKR1E2	83592	broad.mit.edu	37	10	4872893	4872893	+	Silent	SNP	A	G	G			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALDH16A1	126133	broad.mit.edu	37	19	49967043	49967043	+	Intron	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALDH1A2	8854	broad.mit.edu	37	15	58285171	58285171	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALG3	10195	broad.mit.edu	37	3	183960548	183960548	+	Intron	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALKBH7	84266	broad.mit.edu	37	19	6374138	6374138	+	Intron	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALK	238	broad.mit.edu	37	2	29474156	29474156	+	Intron	SNP	G	C	C			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALPK1	80216	broad.mit.edu	37	4	113351864	113351864	+	Silent	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AMELX	265	broad.mit.edu	37	X	11316810	11316810	+	Missense_Mutation	SNP	C	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AMPH	273	broad.mit.edu	37	7	38530667	38530667	+	Missense_Mutation	SNP	G	C	C			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANK2	287	broad.mit.edu	37	4	114276332	114276332	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANK3	288	broad.mit.edu	37	10	61958062	61958062	+	Intron	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKRD13C	81573	broad.mit.edu	37	1	70758026	70758026	+	Intron	SNP	C	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKRD30A	91074	broad.mit.edu	37	10	37418836	37418836	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKRD30A	91074	broad.mit.edu	37	10	37451742	37451742	+	Silent	SNP	C	G	G			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKRD35	148741	broad.mit.edu	37	1	145562033	145562033	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKRD5	63926	broad.mit.edu	37	20	10035065	10035065	+	Intron	SNP	A	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKS4B	257629	broad.mit.edu	37	16	21245167	21245167	+	Missense_Mutation	SNP	C	G	G			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANLN	54443	broad.mit.edu	37	7	36463494	36463494	+	Missense_Mutation	SNP	G	C	C			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANO3	63982	broad.mit.edu	37	11	26664740	26664740	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AOX1	316	broad.mit.edu	37	2	201468757	201468757	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AP1G1	164	broad.mit.edu	37	16	71779543	71779543	+	Intron	SNP	T	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AP2A1	160	broad.mit.edu	37	19	50302620	50302620	+	Silent	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
APBA2	321	broad.mit.edu	37	15	29346661	29346661	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
APBB2	323	broad.mit.edu	37	4	40895341	40895341	+	Missense_Mutation	SNP	T	C	C			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
APC	324	broad.mit.edu	37	5	112111325	112111325	+	Splice_Site	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
APLP1	333	broad.mit.edu	37	19	36363246	36363246	+	Intron	SNP	C	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
APLP1	333	broad.mit.edu	37	19	36369812	36369812	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
APOA2	336	broad.mit.edu	37	1	161192528	161192528	+	Intron	SNP	T	C	C			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
APOBEC3H	164668	broad.mit.edu	37	22	39498047	39498047	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
APOC4	346	broad.mit.edu	37	19	45448326	45448326	+	Intron	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
APTX	54840	broad.mit.edu	37	9	32989594	32989594	+	Intron	SNP	C	G	G			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AQPEP	206338	broad.mit.edu	37	5	115338596	115338596	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARFGEF1	10565	broad.mit.edu	37	8	68184192	68184192	+	Intron	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGAP21	57584	broad.mit.edu	37	10	24880745	24880745	+	Intron	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGAP25	9938	broad.mit.edu	37	2	69049695	69049695	+	Nonsense_Mutation	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGAP31	57514	broad.mit.edu	37	3	119134119	119134119	+	Missense_Mutation	SNP	A	T	T	rs12107254		TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGAP36	158763	broad.mit.edu	37	X	130219600	130219600	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGEF17	9828	broad.mit.edu	37	11	73071467	73071467	+	Nonsense_Mutation	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGEF2	9181	broad.mit.edu	37	1	155919986	155919986	+	Intron	SNP	T	C	C			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARID5A	10865	broad.mit.edu	37	2	97217799	97217799	+	Missense_Mutation	SNP	A	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARIH1	25820	broad.mit.edu	37	15	72873191	72873191	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARL6IP1	23204	broad.mit.edu	37	16	18810034	18810034	+	Silent	SNP	A	G	G			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARMC1	55156	broad.mit.edu	37	8	66517566	66517566	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ART5	116969	broad.mit.edu	37	11	3661177	3661177	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASAH2	56624	broad.mit.edu	37	10	52003183	52003183	+	Intron	DEL	A	-	-			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASAM	79827	broad.mit.edu	37	11	122954456	122954456	+	Missense_Mutation	SNP	A	G	G			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASB16	92591	broad.mit.edu	37	17	42248402	42248402	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASB18	401036	broad.mit.edu	37	2	237172946	237172946	+	Missense_Mutation	SNP	C	G	G			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASGR2	433	broad.mit.edu	37	17	7004962	7004962	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASGR2	433	broad.mit.edu	37	17	7005368	7005368	+	Intron	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASMT	438	broad.mit.edu	37	X	1748721	1748721	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASPM	259266	broad.mit.edu	37	1	197073483	197073483	+	Missense_Mutation	SNP	C	G	G			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASTN1	460	broad.mit.edu	37	1	177030247	177030247	+	Silent	SNP	T	C	C			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASXL1	171023	broad.mit.edu	37	20	31016111	31016111	+	Intron	DEL	A	-	-	rs140029019	by1000genomes	TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASZ1	136991	broad.mit.edu	37	7	117067454	117067454	+	Missense_Mutation	SNP	C	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATG9B	285973	broad.mit.edu	37	7	150718261	150718261	+	Intron	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATM	472	broad.mit.edu	37	11	108218052	108218052	+	Silent	SNP	G	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP10D	57205	broad.mit.edu	37	4	47592945	47592945	+	Intron	SNP	G	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP12A	479	broad.mit.edu	37	13	25276047	25276047	+	Intron	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP1A4	480	broad.mit.edu	37	1	160143830	160143830	+	Intron	SNP	A	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP2A3	489	broad.mit.edu	37	17	3839652	3839652	+	Silent	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP5L	10632	broad.mit.edu	37	11	118279714	118279714	+	Splice_Site	SNP	G	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP6V1A	523	broad.mit.edu	37	3	113513802	113513802	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP6V1C1	528	broad.mit.edu	37	8	104066159	104066159	+	Missense_Mutation	SNP	A	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP7B	540	broad.mit.edu	37	13	52520617	52520617	+	Intron	SNP	G	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP8A1	10396	broad.mit.edu	37	4	42596337	42596337	+	Intron	SNP	T	C	C			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP8A2	51761	broad.mit.edu	37	13	26128042	26128042	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AURKC	6795	broad.mit.edu	37	19	57743931	57743931	+	Silent	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
B3GALNT1	8706	broad.mit.edu	37	3	160803765	160803765	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
B3GALNT1	8706	broad.mit.edu	37	3	160804474	160804474	+	Silent	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BAI3	577	broad.mit.edu	37	6	70064119	70064119	+	Intron	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BARD1	580	broad.mit.edu	37	2	215645838	215645838	+	Missense_Mutation	SNP	T	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BARHL1	56751	broad.mit.edu	37	9	135464640	135464640	+	Missense_Mutation	SNP	G	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BASP1	10409	broad.mit.edu	37	5	17275906	17275906	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BCORL1	63035	broad.mit.edu	37	X	129147031	129147031	+	Missense_Mutation	SNP	C	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BLM	641	broad.mit.edu	37	15	91303889	91303889	+	Missense_Mutation	SNP	G	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BMP10	27302	broad.mit.edu	37	2	69098246	69098246	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BNC1	646	broad.mit.edu	37	15	83931874	83931874	+	Missense_Mutation	SNP	G	C	C			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BRCA2	675	broad.mit.edu	37	13	32893164	32893164	+	Intron	SNP	A	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BRD1	23774	broad.mit.edu	37	22	50170839	50170839	+	Intron	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BRDT	676	broad.mit.edu	37	1	92446675	92446675	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BRS3	680	broad.mit.edu	37	X	135574072	135574073	+	Intron	INS	-	TTTTT	TTTTT	rs12843053		TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BRSK1	84446	broad.mit.edu	37	19	55817713	55817713	+	Missense_Mutation	SNP	C	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BRWD1	54014	broad.mit.edu	37	21	40568393	40568393	+	Intron	SNP	G	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BTN1A1	696	broad.mit.edu	37	6	26502093	26502093	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BZRAP1	9256	broad.mit.edu	37	17	56386312	56386312	+	Nonsense_Mutation	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BZRAP1	9256	broad.mit.edu	37	17	56386537	56386537	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C10orf140	387640	broad.mit.edu	37	10	21804386	21804386	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C10orf53	282966	broad.mit.edu	37	10	50901862	50901862	+	Missense_Mutation	SNP	T	A	A	rs147880636	byFrequency	TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C10orf90	118611	broad.mit.edu	37	10	128150158	128150158	+	Intron	SNP	G	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C11orf41	25758	broad.mit.edu	37	11	33564707	33564708	+	Frame_Shift_Ins	INS	-	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C11orf9	745	broad.mit.edu	37	11	61539345	61539345	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C14orf102	55051	broad.mit.edu	37	14	90755074	90755074	+	Missense_Mutation	SNP	A	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C14orf106	55320	broad.mit.edu	37	14	45705137	45705137	+	Missense_Mutation	SNP	T	C	C			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C14orf143	90141	broad.mit.edu	37	14	90397866	90397866	+	Intron	SNP	A	G	G			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C16orf45	89927	broad.mit.edu	37	16	15661764	15661764	+	Intron	SNP	T	C	C			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C19orf41	126123	broad.mit.edu	37	19	50657931	50657931	+	Silent	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1QTNF1	114897	broad.mit.edu	37	17	77043860	77043860	+	Missense_Mutation	SNP	A	G	G	rs149440649	byFrequency	TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1QTNF4	114900	broad.mit.edu	37	11	47611633	47611633	+	Missense_Mutation	SNP	A	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf106	55765	broad.mit.edu	37	1	200867606	200867606	+	Intron	SNP	C	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf125	126859	broad.mit.edu	37	1	179437807	179437807	+	Intron	SNP	G	C	C			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf125	126859	broad.mit.edu	37	1	179504155	179504155	+	Intron	SNP	C	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf162	128346	broad.mit.edu	37	1	112020456	112020456	+	Intron	SNP	C	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf168	199920	broad.mit.edu	37	1	57252874	57252874	+	Silent	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf173	127254	broad.mit.edu	37	1	75037557	75037557	+	Silent	SNP	G	T	T	rs17095605	byFrequency;by1000genomes	TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf173	127254	broad.mit.edu	37	1	75065731	75065731	+	Intron	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf175	374977	broad.mit.edu	37	1	55134563	55134563	+	Silent	SNP	C	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf175	374977	broad.mit.edu	37	1	55166854	55166854	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf201	90529	broad.mit.edu	37	1	24727705	24727705	+	Intron	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf94	84970	broad.mit.edu	37	1	34663443	34663443	+	Missense_Mutation	SNP	A	C	C			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf95	375057	broad.mit.edu	37	1	226784685	226784685	+	Intron	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C20orf132	140699	broad.mit.edu	37	20	35748921	35748921	+	Missense_Mutation	SNP	C	G	G			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C20orf186	149954	broad.mit.edu	37	20	31672780	31672780	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C21orf59	56683	broad.mit.edu	37	21	33974319	33974319	+	Intron	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C22orf28	51493	broad.mit.edu	37	22	32808252	32808252	+	5'UTR	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C22orf31	25770	broad.mit.edu	37	22	29456675	29456675	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C2orf39	92749	broad.mit.edu	37	2	26647036	26647036	+	Intron	SNP	G	C	C			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C2orf48	348738	broad.mit.edu	37	2	10350553	10350553	+	Missense_Mutation	SNP	G	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C2orf48	348738	broad.mit.edu	37	2	10350596	10350596	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C3	718	broad.mit.edu	37	19	6693170	6693170	+	Intron	SNP	G	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C3orf36	80111	broad.mit.edu	37	3	133647067	133647067	+	3'UTR	SNP	G	C	C			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C5AR1	728	broad.mit.edu	37	19	47823415	47823415	+	Silent	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C5orf25	375484	broad.mit.edu	37	5	175763870	175763870	+	Silent	SNP	C	G	G			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C5orf42	65250	broad.mit.edu	37	5	37209440	37209440	+	Intron	SNP	C	G	G			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C6orf142	90523	broad.mit.edu	37	6	54095697	54095697	+	Missense_Mutation	SNP	T	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C6orf154	221424	broad.mit.edu	37	6	43475161	43475161	+	Intron	SNP	G	C	C			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C6orf35	729515	broad.mit.edu	37	6	157744439	157744439	+	Intron	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C7orf31	136895	broad.mit.edu	37	7	25194712	25194712	+	Silent	SNP	C	G	G			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C7orf51	222950	broad.mit.edu	37	7	100086049	100086049	+	Silent	SNP	T	C	C			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C7orf58	79974	broad.mit.edu	37	7	120629986	120629986	+	Intron	SNP	C	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C8orf37	157657	broad.mit.edu	37	8	96281405	96281405	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C9orf171	389799	broad.mit.edu	37	9	135357749	135357749	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C9orf86	55684	broad.mit.edu	37	9	139722846	139722846	+	Intron	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CA13	377677	broad.mit.edu	37	8	86158015	86158015	+	5'UTR	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CA3	761	broad.mit.edu	37	8	86354332	86354332	+	Missense_Mutation	SNP	A	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CABC1	56997	broad.mit.edu	37	1	227152708	227152708	+	Missense_Mutation	SNP	A	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CABP2	51475	broad.mit.edu	37	11	67288472	67288472	+	Intron	SNP	T	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1B	774	broad.mit.edu	37	9	140972745	140972745	+	Intron	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1C	775	broad.mit.edu	37	12	2795394	2795394	+	Missense_Mutation	SNP	T	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1E	777	broad.mit.edu	37	1	181620652	181620652	+	Intron	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1I	8911	broad.mit.edu	37	22	40054082	40054082	+	Intron	SNP	G	T	T	rs12169701	by1000genomes	TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA2D1	781	broad.mit.edu	37	7	81588610	81588610	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA2D1	781	broad.mit.edu	37	7	81589101	81589101	+	Missense_Mutation	SNP	A	G	G			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA2D1	781	broad.mit.edu	37	7	81978995	81978995	+	Intron	SNP	T	C	C			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA2D4	93589	broad.mit.edu	37	12	2022194	2022194	+	Missense_Mutation	SNP	C	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNG3	10368	broad.mit.edu	37	16	24358024	24358024	+	Intron	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CADM1	23705	broad.mit.edu	37	11	115085438	115085438	+	Missense_Mutation	SNP	C	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CAD	790	broad.mit.edu	37	2	27457199	27457199	+	Intron	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CAGE1	285782	broad.mit.edu	37	6	7342261	7342261	+	Intron	SNP	T	C	C			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CALCR	799	broad.mit.edu	37	7	93107034	93107034	+	Intron	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CALD1	800	broad.mit.edu	37	7	134632491	134632491	+	Missense_Mutation	SNP	G	C	C			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CAMK2B	816	broad.mit.edu	37	7	44283142	44283142	+	Intron	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CAPN6	827	broad.mit.edu	37	X	110494471	110494471	+	Missense_Mutation	SNP	G	C	C			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CAPS2	84698	broad.mit.edu	37	12	75699617	75699617	+	Intron	SNP	C	G	G			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CAPZB	832	broad.mit.edu	37	1	19683367	19683367	+	Intron	SNP	T	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CASP1	834	broad.mit.edu	37	11	104972101	104972101	+	Intron	SNP	C	A	A	rs77208579	byFrequency;by1000genomes	TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CASP1	834	broad.mit.edu	37	11	104972245	104972245	+	5'Flank	SNP	G	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CASZ1	54897	broad.mit.edu	37	1	10702959	10702959	+	Silent	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CBLN4	140689	broad.mit.edu	37	20	54573763	54573763	+	Silent	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC104	112942	broad.mit.edu	37	2	55756198	55756198	+	Intron	SNP	G	C	C			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC132	55610	broad.mit.edu	37	7	92905437	92905437	+	Intron	SNP	A	G	G			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC141	285025	broad.mit.edu	37	2	179742780	179742780	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC147	159686	broad.mit.edu	37	10	106160471	106160471	+	Frame_Shift_Del	DEL	C	-	-			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC27	148870	broad.mit.edu	37	1	3669132	3669132	+	Silent	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC41	51134	broad.mit.edu	37	12	94818600	94818600	+	Intron	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC54	84692	broad.mit.edu	37	3	107096575	107096575	+	Silent	SNP	T	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC73	493860	broad.mit.edu	37	11	32636435	32636435	+	Nonsense_Mutation	SNP	G	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC74B	91409	broad.mit.edu	37	2	130897702	130897702	+	Intron	SNP	T	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC88A	55704	broad.mit.edu	37	2	55555429	55555429	+	Splice_Site	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC8	83987	broad.mit.edu	37	19	46916052	46916052	+	Nonsense_Mutation	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC9	26093	broad.mit.edu	37	19	47763903	47763903	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCKBR	887	broad.mit.edu	37	11	6292047	6292047	+	Intron	SNP	A	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCL8	6355	broad.mit.edu	37	17	32647250	32647250	+	Intron	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCNA1	8900	broad.mit.edu	37	13	37015285	37015285	+	Missense_Mutation	SNP	G	C	C			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCNB3	85417	broad.mit.edu	37	X	50094330	50094330	+	Missense_Mutation	SNP	T	C	C			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCND3	896	broad.mit.edu	37	6	42016394	42016394	+	5'UTR	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCT8L2	150160	broad.mit.edu	37	22	17072912	17072913	+	Missense_Mutation	DNP	TG	AT	AT			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD109	135228	broad.mit.edu	37	6	74497100	74497100	+	Silent	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD163	9332	broad.mit.edu	37	12	7639141	7639141	+	Frame_Shift_Del	DEL	C	-	-			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD1A	909	broad.mit.edu	37	1	158227187	158227187	+	Intron	SNP	C	G	G			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD1B	910	broad.mit.edu	37	1	158299213	158299213	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD1B	910	broad.mit.edu	37	1	158299803	158299803	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD2AP	23607	broad.mit.edu	37	6	47544814	47544814	+	Missense_Mutation	SNP	G	C	C			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD300LG	146894	broad.mit.edu	37	17	41925910	41925910	+	Intron	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD33	945	broad.mit.edu	37	19	51729397	51729397	+	Intron	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD33	945	broad.mit.edu	37	19	51729641	51729641	+	Intron	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD33	945	broad.mit.edu	37	19	51738451	51738451	+	Missense_Mutation	SNP	T	C	C			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD36	948	broad.mit.edu	37	7	80108053	80108053	+	Intron	SNP	C	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD36	948	broad.mit.edu	37	7	80108333	80108333	+	Intron	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD36	948	broad.mit.edu	37	7	80300263	80300263	+	Intron	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD58	965	broad.mit.edu	37	1	117078535	117078537	+	Intron	DEL	CAC	-	-			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDC37	11140	broad.mit.edu	37	19	10502118	10502118	+	3'UTR	SNP	G	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDCP1	64866	broad.mit.edu	37	3	45153697	45153697	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH10	1008	broad.mit.edu	37	5	24487989	24487989	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH10	1008	broad.mit.edu	37	5	24537496	24537497	+	Frame_Shift_Del	DEL	AG	-	-			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH11	1009	broad.mit.edu	37	16	64981755	64981755	+	Missense_Mutation	SNP	G	C	C			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH12	1010	broad.mit.edu	37	5	21752217	21752217	+	Missense_Mutation	SNP	C	G	G			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH17	1015	broad.mit.edu	37	8	95189829	95189829	+	Missense_Mutation	SNP	T	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH20	28316	broad.mit.edu	37	18	59170142	59170142	+	Intron	SNP	C	A	A	rs79927496	by1000genomes	TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH20	28316	broad.mit.edu	37	18	59170497	59170497	+	Intron	SNP	C	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH24	64403	broad.mit.edu	37	14	23517554	23517554	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDHR3	222256	broad.mit.edu	37	7	105624631	105624631	+	Intron	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDHR5	53841	broad.mit.edu	37	11	619418	619419	+	Intron	DNP	TA	CT	CT			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDK11B	984	broad.mit.edu	37	1	1573207	1573207	+	Nonsense_Mutation	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDK18	5129	broad.mit.edu	37	1	205492412	205492412	+	Missense_Mutation	SNP	C	G	G			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDK5RAP2	55755	broad.mit.edu	37	9	123253727	123253727	+	Missense_Mutation	SNP	C	G	G			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDK5	1020	broad.mit.edu	37	7	150752434	150752434	+	Silent	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDX4	1046	broad.mit.edu	37	X	72667056	72667056	+	5'Flank	SNP	G	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CEACAM1	634	broad.mit.edu	37	19	43025290	43025290	+	Intron	SNP	G	C	C			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CEACAM20	125931	broad.mit.edu	37	19	45015707	45015707	+	Silent	SNP	C	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CELA1	1990	broad.mit.edu	37	12	51736338	51736339	+	Intron	DNP	CC	AG	AG			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CELSR1	9620	broad.mit.edu	37	22	46760393	46760393	+	Intron	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CENPF	1063	broad.mit.edu	37	1	214815375	214815375	+	Nonsense_Mutation	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CENPP	401541	broad.mit.edu	37	9	95099903	95099903	+	Nonsense_Mutation	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CEP110	11064	broad.mit.edu	37	9	123935822	123935822	+	Intron	SNP	G	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CEP135	9662	broad.mit.edu	37	4	56823318	56823318	+	Intron	SNP	A	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CEP135	9662	broad.mit.edu	37	4	56837457	56837457	+	Missense_Mutation	SNP	G	C	C			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CEP164	22897	broad.mit.edu	37	11	117265563	117265563	+	Intron	SNP	C	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CEP164	22897	broad.mit.edu	37	11	117280506	117280506	+	Missense_Mutation	SNP	G	C	C			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CETP	1071	broad.mit.edu	37	16	57015098	57015098	+	Missense_Mutation	SNP	A	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CGB2	114336	broad.mit.edu	37	19	49535474	49535474	+	Intron	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CGB	1082	broad.mit.edu	37	19	49547628	49547628	+	Intron	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHAT	1103	broad.mit.edu	37	10	50863104	50863104	+	Intron	SNP	A	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHAT	1103	broad.mit.edu	37	10	50870609	50870609	+	Intron	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHI3L2	1117	broad.mit.edu	37	1	111772460	111772460	+	Intron	SNP	C	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHL1	10752	broad.mit.edu	37	3	424236	424236	+	Silent	SNP	C	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHRM3	1131	broad.mit.edu	37	1	240071400	240071400	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHRNA6	8973	broad.mit.edu	37	8	42611334	42611334	+	Silent	SNP	T	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHRNB1	1140	broad.mit.edu	37	17	7350393	7350393	+	Missense_Mutation	SNP	A	G	G			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHRND	1144	broad.mit.edu	37	2	233398755	233398755	+	Nonsense_Mutation	SNP	G	T	T	rs145920855		TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHRNG	1146	broad.mit.edu	37	2	233404411	233404411	+	5'Flank	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHST2	9435	broad.mit.edu	37	3	142841089	142841089	+	Silent	SNP	G	T	T	rs147682013	byFrequency	TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CITED2	10370	broad.mit.edu	37	6	139695015	139695015	+	Missense_Mutation	SNP	G	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CITED2	10370	broad.mit.edu	37	6	139695043	139695043	+	Silent	SNP	G	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CKAP2L	150468	broad.mit.edu	37	2	113522304	113522304	+	5'Flank	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLCA4	22802	broad.mit.edu	37	1	87041270	87041270	+	Missense_Mutation	SNP	G	C	C			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLCN1	1180	broad.mit.edu	37	7	143016969	143016969	+	Splice_Site	SNP	G	C	C			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLCNKA	1187	broad.mit.edu	37	1	16356607	16356607	+	Intron	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLEC4M	10332	broad.mit.edu	37	19	7832409	7832409	+	Missense_Mutation	SNP	T	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLPTM1	1209	broad.mit.edu	37	19	45495829	45495829	+	Intron	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLSTN2	64084	broad.mit.edu	37	3	140280938	140280938	+	Intron	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLTC	1213	broad.mit.edu	37	17	57725719	57725719	+	Nonsense_Mutation	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CMA1	1215	broad.mit.edu	37	14	24975648	24975648	+	Intron	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNBD1	168975	broad.mit.edu	37	8	88249365	88249365	+	Intron	DEL	C	-	-			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNGA3	1261	broad.mit.edu	37	2	99008471	99008471	+	Intron	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNGB3	54714	broad.mit.edu	37	8	87588160	87588161	+	Missense_Mutation	DNP	GG	AT	AT			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTN3	5067	broad.mit.edu	37	3	74411047	74411047	+	Missense_Mutation	SNP	T	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COG7	91949	broad.mit.edu	37	16	23436189	23436189	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL11A1	1301	broad.mit.edu	37	1	103352510	103352510	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL11A1	1301	broad.mit.edu	37	1	103484467	103484467	+	Intron	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL14A1	7373	broad.mit.edu	37	8	121170563	121170563	+	Intron	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL14A1	7373	broad.mit.edu	37	8	121222052	121222052	+	Missense_Mutation	SNP	G	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL19A1	1310	broad.mit.edu	37	6	70852728	70852728	+	Intron	SNP	T	C	C			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL20A1	57642	broad.mit.edu	37	20	61959359	61959359	+	Intron	SNP	T	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL22A1	169044	broad.mit.edu	37	8	139668139	139668139	+	Splice_Site	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL24A1	255631	broad.mit.edu	37	1	86591502	86591502	+	Nonsense_Mutation	SNP	G	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL3A1	1281	broad.mit.edu	37	2	189870985	189870985	+	Silent	SNP	G	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL3A1	1281	broad.mit.edu	37	2	189875573	189875573	+	Missense_Mutation	SNP	G	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL5A2	1290	broad.mit.edu	37	2	189931133	189931133	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL6A3	1293	broad.mit.edu	37	2	238253293	238253293	+	Silent	SNP	C	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL7A1	1294	broad.mit.edu	37	3	48619147	48619147	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPA1	1357	broad.mit.edu	37	7	130023602	130023602	+	Silent	SNP	C	G	G			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPA1	1357	broad.mit.edu	37	7	130025214	130025214	+	Intron	SNP	C	G	G			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPA3	1359	broad.mit.edu	37	3	148614503	148614503	+	3'UTR	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPPED1	55313	broad.mit.edu	37	16	12758931	12758931	+	Missense_Mutation	SNP	C	G	G			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPS1	1373	broad.mit.edu	37	2	211438024	211438024	+	Silent	SNP	A	C	C			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPS1	1373	broad.mit.edu	37	2	211525277	211525277	+	Silent	SNP	C	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPS1	1373	broad.mit.edu	37	2	211525286	211525286	+	Silent	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPT1A	1374	broad.mit.edu	37	11	68540772	68540772	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPT1C	126129	broad.mit.edu	37	19	50209380	50209380	+	Intron	SNP	G	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPT1C	126129	broad.mit.edu	37	19	50216267	50216267	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPVL	54504	broad.mit.edu	37	7	29070193	29070193	+	Missense_Mutation	SNP	C	G	G			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPXM2	119587	broad.mit.edu	37	10	125506513	125506513	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CRAMP1L	57585	broad.mit.edu	37	16	1710023	1710023	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CRHR1	1394	broad.mit.edu	37	17	43898625	43898626	+	Intron	DNP	CC	AT	AT			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CRISPLD2	83716	broad.mit.edu	37	16	84907567	84907567	+	Missense_Mutation	SNP	A	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CRMP1	1400	broad.mit.edu	37	4	5844865	5844865	+	Missense_Mutation	SNP	C	T	T	rs146352571	byFrequency	TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CRTC2	200186	broad.mit.edu	37	1	153924914	153924915	+	Frame_Shift_Del	DEL	TG	-	-			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSF1R	1436	broad.mit.edu	37	5	149439189	149439189	+	Intron	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSF1	1435	broad.mit.edu	37	1	110466876	110466876	+	Intron	SNP	G	C	C			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSHL1	1444	broad.mit.edu	37	17	61987904	61987904	+	Intron	SNP	G	C	C			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD2	114784	broad.mit.edu	37	1	34011845	34011845	+	Intron	SNP	C	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD3	114788	broad.mit.edu	37	8	113363374	113363374	+	Intron	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD3	114788	broad.mit.edu	37	8	113599265	113599265	+	Intron	SNP	C	G	G			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD3	114788	broad.mit.edu	37	8	113694658	113694658	+	Intron	SNP	C	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD3	114788	broad.mit.edu	37	8	113694713	113694713	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD3	114788	broad.mit.edu	37	8	114448881	114448881	+	Intron	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSPG4	1464	broad.mit.edu	37	15	75981912	75981912	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTCFL	140690	broad.mit.edu	37	20	56098207	56098207	+	Missense_Mutation	SNP	A	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTTN	2017	broad.mit.edu	37	11	70261870	70261870	+	Intron	SNP	G	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CUBN	8029	broad.mit.edu	37	10	16942581	16942581	+	Intron	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CUBN	8029	broad.mit.edu	37	10	17130324	17130324	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP11B1	1584	broad.mit.edu	37	8	143958347	143958347	+	Intron	SNP	C	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP20A1	57404	broad.mit.edu	37	2	204111546	204111546	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP24A1	1591	broad.mit.edu	37	20	52782353	52782353	+	Nonsense_Mutation	SNP	A	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP2A7	1549	broad.mit.edu	37	19	41382365	41382365	+	Intron	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP2A7	1549	broad.mit.edu	37	19	41382587	41382587	+	Intron	SNP	G	C	C			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP4F12	66002	broad.mit.edu	37	19	15807280	15807280	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP4F2	8529	broad.mit.edu	37	19	16006296	16006296	+	Intron	SNP	C	G	G	rs34226869		TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DAAM1	23002	broad.mit.edu	37	14	59830539	59830539	+	Intron	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DAB1	1600	broad.mit.edu	37	1	57476811	57476811	+	Intron	SNP	C	G	G			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DAB1	1600	broad.mit.edu	37	1	57476878	57476878	+	Silent	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DAB1	1600	broad.mit.edu	37	1	57491769	57491769	+	Intron	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DBR1	51163	broad.mit.edu	37	3	137888933	137888933	+	Intron	SNP	T	C	C			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCBLD1	285761	broad.mit.edu	37	6	117825053	117825053	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCC	1630	broad.mit.edu	37	18	50976858	50976858	+	Intron	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCTN1	1639	broad.mit.edu	37	2	74592169	74592169	+	Intron	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCUN1D3	123879	broad.mit.edu	37	16	20873563	20873563	+	Missense_Mutation	SNP	C	G	G			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DDA1	79016	broad.mit.edu	37	19	17426798	17426799	+	Frame_Shift_Ins	INS	-	A	A	rs148196076	by1000genomes	TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DDO	8528	broad.mit.edu	37	6	110714247	110714247	+	Nonsense_Mutation	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DDR2	4921	broad.mit.edu	37	1	162745481	162745481	+	Silent	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DDX10	1662	broad.mit.edu	37	11	108564339	108564339	+	Intron	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DDX24	57062	broad.mit.edu	37	14	94527508	94527508	+	Intron	SNP	T	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DDX31	64794	broad.mit.edu	37	9	135537745	135537745	+	Intron	SNP	C	T	T	rs145631556	by1000genomes	TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DDX41	51428	broad.mit.edu	37	5	176940389	176940389	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DEFB119	245932	broad.mit.edu	37	20	29978119	29978119	+	Intron	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DEFB129	140881	broad.mit.edu	37	20	207925	207925	+	5'UTR	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DENND1C	79958	broad.mit.edu	37	19	6479631	6479631	+	Intron	SNP	C	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DENND2A	27147	broad.mit.edu	37	7	140287403	140287403	+	Intron	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DGCR8	54487	broad.mit.edu	37	22	20074603	20074603	+	Intron	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DGKA	1606	broad.mit.edu	37	12	56330338	56330338	+	Silent	SNP	A	G	G			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DGKA	1606	broad.mit.edu	37	12	56331168	56331168	+	Intron	SNP	G	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DGKA	1606	broad.mit.edu	37	12	56332805	56332805	+	Intron	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DGKB	1607	broad.mit.edu	37	7	14613905	14613905	+	Missense_Mutation	SNP	T	C	C			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DGKH	160851	broad.mit.edu	37	13	42644816	42644816	+	Intron	SNP	C	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DHX9	1660	broad.mit.edu	37	1	182841640	182841640	+	Intron	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DIDO1	11083	broad.mit.edu	37	20	61525743	61525743	+	Intron	SNP	C	G	G			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DLEC1	9940	broad.mit.edu	37	3	38126765	38126766	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DLGAP1	9229	broad.mit.edu	37	18	3534574	3534574	+	Silent	SNP	T	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DLGAP4	22839	broad.mit.edu	37	20	35061089	35061089	+	Missense_Mutation	SNP	C	G	G			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DLK1	8788	broad.mit.edu	37	14	101195327	101195327	+	Silent	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DMD	1756	broad.mit.edu	37	X	32862918	32862918	+	Silent	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DMRT1	1761	broad.mit.edu	37	9	847037	847037	+	Missense_Mutation	SNP	G	C	C			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DMRT3	58524	broad.mit.edu	37	9	990523	990523	+	Missense_Mutation	SNP	A	G	G			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH11	8701	broad.mit.edu	37	7	21775528	21775528	+	Intron	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH2	146754	broad.mit.edu	37	17	7720823	7720823	+	Intron	SNP	C	G	G			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH5	1767	broad.mit.edu	37	5	13824389	13824389	+	Silent	SNP	T	C	C			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH5	1767	broad.mit.edu	37	5	13894882	13894882	+	Missense_Mutation	SNP	T	C	C			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH7	56171	broad.mit.edu	37	2	196729567	196729567	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH9	1770	broad.mit.edu	37	17	11593206	11593206	+	Missense_Mutation	SNP	T	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH9	1770	broad.mit.edu	37	17	11593507	11593507	+	Silent	SNP	G	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH9	1770	broad.mit.edu	37	17	11684316	11684316	+	Intron	SNP	C	G	G			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAJC10	54431	broad.mit.edu	37	2	183619847	183619847	+	Intron	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAJC11	55735	broad.mit.edu	37	1	6705159	6705159	+	Missense_Mutation	SNP	T	C	C			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNM1	1759	broad.mit.edu	37	9	131010350	131010350	+	Intron	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DOCK2	1794	broad.mit.edu	37	5	169116287	169116287	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DOCK2	1794	broad.mit.edu	37	5	169477111	169477111	+	Intron	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DOK1	1796	broad.mit.edu	37	2	74782721	74782721	+	Missense_Mutation	SNP	C	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DOLPP1	57171	broad.mit.edu	37	9	131847036	131847036	+	Nonsense_Mutation	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DPT	1805	broad.mit.edu	37	1	168670289	168670289	+	Silent	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DPY19L2P1	554236	broad.mit.edu	37	7	35144292	35144292	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DPY19L2P2	349152	broad.mit.edu	37	7	102825936	102825936	+	Silent	SNP	G	C	C			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DPY19L3	147991	broad.mit.edu	37	19	32945951	32945951	+	Intron	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DPYD	1806	broad.mit.edu	37	1	97981407	97981407	+	Missense_Mutation	SNP	C	G	G	rs142619737	byFrequency	TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DPYD	1806	broad.mit.edu	37	1	98206097	98206097	+	Intron	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DRD2	1813	broad.mit.edu	37	11	113285099	113285099	+	Missense_Mutation	SNP	C	G	G			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DSC3	1825	broad.mit.edu	37	18	28586988	28586988	+	Nonsense_Mutation	SNP	A	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DSCAM	1826	broad.mit.edu	37	21	41647902	41647902	+	Intron	SNP	A	G	G			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DSG2	1829	broad.mit.edu	37	18	29125892	29125892	+	Missense_Mutation	SNP	A	G	G			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DSG4	147409	broad.mit.edu	37	18	28983423	28983423	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DST	667	broad.mit.edu	37	6	56399962	56399962	+	Silent	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DTNA	1837	broad.mit.edu	37	18	32431892	32431892	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DTX3L	151636	broad.mit.edu	37	3	122287986	122287986	+	Silent	SNP	T	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DUS3L	56931	broad.mit.edu	37	19	5787750	5787750	+	Intron	SNP	G	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DUSP22	56940	broad.mit.edu	37	6	348191	348191	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DUSP2	1844	broad.mit.edu	37	2	96809566	96809566	+	Missense_Mutation	SNP	T	C	C			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DYDC2	84332	broad.mit.edu	37	10	82126745	82126745	+	3'UTR	SNP	A	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DYNC1I1	1780	broad.mit.edu	37	7	95668813	95668813	+	Intron	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DYNC2H1	79659	broad.mit.edu	37	11	103029634	103029634	+	Intron	SNP	A	G	G			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DYSF	8291	broad.mit.edu	37	2	71730294	71730294	+	Intron	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DYTN	391475	broad.mit.edu	37	2	207530852	207530852	+	Intron	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DZIP1L	199221	broad.mit.edu	37	3	137783404	137783404	+	Intron	DEL	C	-	-			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DZIP1L	199221	broad.mit.edu	37	3	137822353	137822353	+	Missense_Mutation	SNP	T	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DZIP1	22873	broad.mit.edu	37	13	96272154	96272154	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EDC4	23644	broad.mit.edu	37	16	67917734	67917734	+	Intron	SNP	C	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EFR3A	23167	broad.mit.edu	37	8	132991151	132991151	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EGFL6	25975	broad.mit.edu	37	X	13641992	13641992	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EGFL7	51162	broad.mit.edu	37	9	139564532	139564532	+	Intron	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EGF	1950	broad.mit.edu	37	4	110909824	110909824	+	Missense_Mutation	SNP	G	C	C			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EHD3	30845	broad.mit.edu	37	2	31489370	31489370	+	Nonsense_Mutation	SNP	G	T	T	rs35925176		TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EIF1AX	1964	broad.mit.edu	37	X	20156717	20156717	+	Missense_Mutation	SNP	T	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EIF2AK1	27102	broad.mit.edu	37	7	6089666	6089666	+	Missense_Mutation	SNP	C	G	G			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EIF3F	8665	broad.mit.edu	37	11	8008860	8008860	+	5'Flank	SNP	T	C	C			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ELMO1	9844	broad.mit.edu	37	7	37172865	37172865	+	Intron	SNP	A	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ELOVL2	54898	broad.mit.edu	37	6	10989959	10989959	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ELOVL6	79071	broad.mit.edu	37	4	110972668	110972668	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ELSPBP1	64100	broad.mit.edu	37	19	48523149	48523149	+	Intron	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EML1	2009	broad.mit.edu	37	14	100363487	100363487	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ENPP2	5168	broad.mit.edu	37	8	120575281	120575281	+	Intron	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ENPP3	5169	broad.mit.edu	37	6	131979423	131979423	+	Intron	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ENPP3	5169	broad.mit.edu	37	6	131992505	131992505	+	Intron	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ENTPD5	957	broad.mit.edu	37	14	74439636	74439636	+	Silent	SNP	G	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ENTPD6	955	broad.mit.edu	37	20	25203621	25203621	+	Intron	SNP	G	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPHA6	285220	broad.mit.edu	37	3	97167406	97167406	+	Intron	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPHA7	2045	broad.mit.edu	37	6	94120573	94120574	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPHA8	2046	broad.mit.edu	37	1	22924752	22924752	+	Intron	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPHB1	2047	broad.mit.edu	37	3	134968293	134968293	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPRS	2058	broad.mit.edu	37	1	220195814	220195829	+	Frame_Shift_Del	DEL	GCTCCCTTTTTTCATT	-	-			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPRS	2058	broad.mit.edu	37	1	220195837	220195837	+	Missense_Mutation	SNP	A	G	G			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ERBB4	2066	broad.mit.edu	37	2	212251683	212251683	+	Nonsense_Mutation	SNP	G	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ERCC5	2073	broad.mit.edu	37	13	103459781	103459781	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ESAM	90952	broad.mit.edu	37	11	124624446	124624446	+	Intron	SNP	A	C	C			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ETS1	2113	broad.mit.edu	37	11	128356001	128356001	+	Silent	SNP	G	C	C			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ETS1	2113	broad.mit.edu	37	11	128426158	128426158	+	Intron	SNP	C	G	G			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EXPH5	23086	broad.mit.edu	37	11	108384381	108384381	+	Missense_Mutation	SNP	C	G	G			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EZH2	2146	broad.mit.edu	37	7	148525827	148525827	+	Intron	SNP	C	A	A	rs143615322	by1000genomes	TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
F13A1	2162	broad.mit.edu	37	6	6251015	6251015	+	Intron	SNP	T	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
F13B	2165	broad.mit.edu	37	1	197026404	197026404	+	Intron	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM123A	219287	broad.mit.edu	37	13	25745110	25745110	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM126A	84668	broad.mit.edu	37	7	22985289	22985289	+	Silent	SNP	T	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM129C	199786	broad.mit.edu	37	19	17653139	17653139	+	Intron	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM129C	199786	broad.mit.edu	37	19	17664400	17664400	+	3'UTR	SNP	C	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM135A	57579	broad.mit.edu	37	6	71232106	71232106	+	Intron	SNP	C	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM135B	51059	broad.mit.edu	37	8	139163423	139163423	+	Intron	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM154A	158297	broad.mit.edu	37	9	18928669	18928669	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM159A	348378	broad.mit.edu	37	1	53122865	53122865	+	Intron	SNP	T	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM161A	84140	broad.mit.edu	37	2	62054330	62054330	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM161A	84140	broad.mit.edu	37	2	62080943	62080943	+	Intron	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM175B	23172	broad.mit.edu	37	10	126490341	126490341	+	5'Flank	SNP	C	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM21C	253725	broad.mit.edu	37	10	46254832	46254832	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM47C	442444	broad.mit.edu	37	X	37027104	37027104	+	Silent	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM5B	57795	broad.mit.edu	37	1	177249846	177249846	+	Missense_Mutation	SNP	C	G	G			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM5C	339479	broad.mit.edu	37	1	190234075	190234075	+	Missense_Mutation	SNP	G	C	C			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM75A6	389730	broad.mit.edu	37	9	43627193	43627193	+	Missense_Mutation	SNP	A	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM78B	149297	broad.mit.edu	37	1	166039455	166039455	+	3'UTR	SNP	C	G	G			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM78B	149297	broad.mit.edu	37	1	166135184	166135184	+	Intron	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM7A2	100288380	broad.mit.edu	37	15	30878133	30878133	+	Intron	SNP	T	C	C			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM81B	153643	broad.mit.edu	37	5	94764225	94764225	+	Intron	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM83B	222584	broad.mit.edu	37	6	54805949	54805949	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FANCG	2189	broad.mit.edu	37	9	35074929	35074929	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FANCM	57697	broad.mit.edu	37	14	45636393	45636393	+	Intron	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FANCM	57697	broad.mit.edu	37	14	45665628	45665628	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAP	2191	broad.mit.edu	37	2	163030285	163030285	+	Missense_Mutation	SNP	G	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAT1	2195	broad.mit.edu	37	4	187629033	187629033	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAT2	2196	broad.mit.edu	37	5	150925237	150925237	+	Frame_Shift_Del	DEL	G	-	-			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAT3	120114	broad.mit.edu	37	11	92616229	92616229	+	Nonsense_Mutation	SNP	A	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAT4	79633	broad.mit.edu	37	4	126242248	126242248	+	Missense_Mutation	SNP	G	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAT4	79633	broad.mit.edu	37	4	126355443	126355443	+	Silent	SNP	A	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBLN1	2192	broad.mit.edu	37	22	45929024	45929024	+	Missense_Mutation	SNP	C	G	G			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBLN5	10516	broad.mit.edu	37	14	92353602	92353602	+	Missense_Mutation	SNP	T	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBLN7	129804	broad.mit.edu	37	2	112942952	112942952	+	Intron	SNP	G	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBN1	2200	broad.mit.edu	37	15	48729176	48729176	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBN2	2201	broad.mit.edu	37	5	127653968	127653968	+	Intron	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBXL20	84961	broad.mit.edu	37	17	37437684	37437684	+	Silent	SNP	T	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBXL7	23194	broad.mit.edu	37	5	15500671	15500672	+	5'UTR	DNP	GG	TT	TT			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBXL7	23194	broad.mit.edu	37	5	15928727	15928727	+	Intron	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBXO21	23014	broad.mit.edu	37	12	117604703	117604703	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBXO30	84085	broad.mit.edu	37	6	146126130	146126130	+	Missense_Mutation	SNP	C	G	G			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBXO38	81545	broad.mit.edu	37	5	147806775	147806775	+	Splice_Site	SNP	G	C	C			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBXO40	51725	broad.mit.edu	37	3	121341476	121341476	+	Silent	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBXW10	10517	broad.mit.edu	37	17	18682089	18682090	+	Frame_Shift_Del	DEL	GA	-	-			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FCER1A	2205	broad.mit.edu	37	1	159272653	159272653	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FCER1G	2207	broad.mit.edu	37	1	161188691	161188691	+	Silent	SNP	G	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FCGR2A	2212	broad.mit.edu	37	1	161487915	161487915	+	Missense_Mutation	SNP	G	C	C			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FCN3	8547	broad.mit.edu	37	1	27696992	27696992	+	Intron	SNP	G	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FCRL1	115350	broad.mit.edu	37	1	157772257	157772257	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FCRL2	79368	broad.mit.edu	37	1	157716558	157716558	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FCRL2	79368	broad.mit.edu	37	1	157737016	157737016	+	Intron	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FCRL5	83416	broad.mit.edu	37	1	157490895	157490895	+	Silent	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FER1L6	654463	broad.mit.edu	37	8	125022845	125022846	+	Frame_Shift_Ins	INS	-	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FEZ1	9638	broad.mit.edu	37	11	125318510	125318510	+	Intron	SNP	G	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FFAR2	2867	broad.mit.edu	37	19	35941483	35941483	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FKBP1B	2281	broad.mit.edu	37	2	24276809	24276809	+	Silent	SNP	G	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLG	2312	broad.mit.edu	37	1	152278945	152278945	+	Missense_Mutation	SNP	A	G	G			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLG	2312	broad.mit.edu	37	1	152280577	152280577	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLJ43950	347127	broad.mit.edu	37	9	84532474	84532474	+	3'UTR	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLJ46321	389763	broad.mit.edu	37	9	84609145	84609145	+	Missense_Mutation	SNP	G	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLNC	2318	broad.mit.edu	37	7	128483990	128483990	+	Intron	SNP	T	G	G			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLNC	2318	broad.mit.edu	37	7	128492994	128492994	+	Silent	SNP	G	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLNC	2318	broad.mit.edu	37	7	128498531	128498531	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLT1	2321	broad.mit.edu	37	13	28880861	28880861	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLT1	2321	broad.mit.edu	37	13	29001841	29001841	+	Intron	SNP	A	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLT1	2321	broad.mit.edu	37	13	29008344	29008344	+	Missense_Mutation	SNP	G	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLT3	2322	broad.mit.edu	37	13	28599148	28599148	+	Intron	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FMN2	56776	broad.mit.edu	37	1	240306506	240306506	+	Intron	SNP	C	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FMO2	2327	broad.mit.edu	37	1	171178097	171178097	+	3'UTR	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FNDC3B	64778	broad.mit.edu	37	3	172028669	172028669	+	Missense_Mutation	SNP	G	C	C			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FNDC5	252995	broad.mit.edu	37	1	33333801	33333801	+	Silent	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FOXG1	2290	broad.mit.edu	37	14	29237013	29237013	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FOXG1	2290	broad.mit.edu	37	14	29237154	29237154	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FRAS1	80144	broad.mit.edu	37	4	79396827	79396827	+	Intron	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FRAS1	80144	broad.mit.edu	37	4	79460460	79460460	+	Missense_Mutation	SNP	C	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FRMD3	257019	broad.mit.edu	37	9	86152983	86152983	+	Intron	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FRMD4B	23150	broad.mit.edu	37	3	69299394	69299394	+	Intron	SNP	G	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FSCB	84075	broad.mit.edu	37	14	44975221	44975221	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FSD1	79187	broad.mit.edu	37	19	4310332	4310332	+	Intron	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FSD2	123722	broad.mit.edu	37	15	83455968	83455968	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FSHR	2492	broad.mit.edu	37	2	49247236	49247236	+	Missense_Mutation	SNP	T	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FSTL5	56884	broad.mit.edu	37	4	162306894	162306894	+	3'UTR	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FTSJ2	29960	broad.mit.edu	37	7	2279214	2279214	+	Missense_Mutation	SNP	G	A	A	rs150856697		TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FXYD4	53828	broad.mit.edu	37	10	43870198	43870198	+	Intron	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FYB	2533	broad.mit.edu	37	5	39203004	39203004	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FYN	2534	broad.mit.edu	37	6	111983199	111983199	+	Intron	SNP	T	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FZD4	8322	broad.mit.edu	37	11	86663317	86663317	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FZD7	8324	broad.mit.edu	37	2	202899448	202899448	+	Silent	SNP	G	C	C	rs35732430	byFrequency	TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABRA1	2554	broad.mit.edu	37	5	161324315	161324315	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABRA5	2558	broad.mit.edu	37	15	27159994	27159994	+	Missense_Mutation	SNP	C	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABRB1	2560	broad.mit.edu	37	4	47427945	47427945	+	Missense_Mutation	SNP	T	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABRG1	2565	broad.mit.edu	37	4	46099313	46099313	+	Nonsense_Mutation	SNP	C	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABRG3	2567	broad.mit.edu	37	15	27572050	27572050	+	Missense_Mutation	SNP	T	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABRR2	2570	broad.mit.edu	37	6	89974338	89974338	+	Intron	SNP	C	G	G			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GAD2	2572	broad.mit.edu	37	10	26506831	26506831	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GAK	2580	broad.mit.edu	37	4	861353	861353	+	Intron	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GAL3ST1	9514	broad.mit.edu	37	22	30951023	30951023	+	Nonsense_Mutation	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GALNT13	114805	broad.mit.edu	37	2	155307078	155307078	+	3'UTR	SNP	A	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GALNT14	79623	broad.mit.edu	37	2	31165143	31165143	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GALNT14	79623	broad.mit.edu	37	2	31167694	31167694	+	Intron	SNP	C	G	G			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GALNT14	79623	broad.mit.edu	37	2	31215704	31215704	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GALR2	8811	broad.mit.edu	37	17	74071323	74071323	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GAP43	2596	broad.mit.edu	37	3	115395290	115395290	+	Missense_Mutation	SNP	C	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GARNL3	84253	broad.mit.edu	37	9	130127662	130127662	+	Intron	SNP	C	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GAST	2520	broad.mit.edu	37	17	39871799	39871799	+	Silent	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GATAD2A	54815	broad.mit.edu	37	19	19606889	19606889	+	Missense_Mutation	SNP	G	C	C			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GBP4	115361	broad.mit.edu	37	1	89662871	89662871	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GBP5	115362	broad.mit.edu	37	1	89734990	89734990	+	Intron	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GGH	8836	broad.mit.edu	37	8	63929993	63929993	+	Intron	SNP	T	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GH1	2688	broad.mit.edu	37	17	61995747	61995747	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GIF	2694	broad.mit.edu	37	11	59608578	59608578	+	Intron	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GIMAP5	55340	broad.mit.edu	37	7	150440086	150440087	+	Frame_Shift_Ins	INS	-	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GIMAP8	155038	broad.mit.edu	37	7	150167962	150167962	+	Missense_Mutation	SNP	G	C	C			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GIT2	9815	broad.mit.edu	37	12	110418688	110418688	+	Intron	SNP	G	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GJA8	2703	broad.mit.edu	37	1	147380357	147380357	+	Missense_Mutation	SNP	A	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLDC	2731	broad.mit.edu	37	9	6554666	6554666	+	Intron	SNP	T	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLI3	2737	broad.mit.edu	37	7	42005086	42005086	+	Silent	SNP	G	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLRA2	2742	broad.mit.edu	37	X	14625379	14625379	+	Missense_Mutation	SNP	A	G	G			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLRB	2743	broad.mit.edu	37	4	158073821	158073821	+	Intron	SNP	A	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLYATL2	219970	broad.mit.edu	37	11	58604651	58604651	+	Splice_Site	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GMDS	2762	broad.mit.edu	37	6	1742766	1742766	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GMPR	2766	broad.mit.edu	37	6	16290587	16290587	+	Intron	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GOLGA6B	55889	broad.mit.edu	37	15	72953619	72953619	+	Silent	SNP	A	G	G			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GOLGA6B	55889	broad.mit.edu	37	15	72953626	72953626	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GOLGB1	2804	broad.mit.edu	37	3	121433902	121433902	+	Intron	SNP	T	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GON4L	54856	broad.mit.edu	37	1	155726714	155726714	+	Intron	SNP	T	C	C			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GOT2	2806	broad.mit.edu	37	16	58756164	58756164	+	Missense_Mutation	SNP	C	A	A	rs137905758	byFrequency	TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPATCH2	55105	broad.mit.edu	37	1	217793069	217793069	+	Intron	SNP	T	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPATCH8	23131	broad.mit.edu	37	17	42477491	42477491	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPD2	2820	broad.mit.edu	37	2	157436299	157436299	+	Missense_Mutation	SNP	A	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR112	139378	broad.mit.edu	37	X	135405537	135405537	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR112	139378	broad.mit.edu	37	X	135431491	135431491	+	Nonsense_Mutation	SNP	C	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR128	84873	broad.mit.edu	37	3	100362478	100362478	+	Splice_Site	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR142	350383	broad.mit.edu	37	17	72368146	72368146	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR149	344758	broad.mit.edu	37	3	154147322	154147322	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR158	57512	broad.mit.edu	37	10	25887285	25887285	+	Silent	SNP	G	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR15	2838	broad.mit.edu	37	3	98250825	98250825	+	5'Flank	SNP	C	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR15	2838	broad.mit.edu	37	3	98251619	98251619	+	Missense_Mutation	SNP	G	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR1	2825	broad.mit.edu	37	2	207041555	207041555	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR32	2854	broad.mit.edu	37	19	51274753	51274753	+	Missense_Mutation	SNP	A	C	C			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR4	2828	broad.mit.edu	37	19	46095190	46095190	+	5'UTR	SNP	G	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR78	27201	broad.mit.edu	37	4	8589020	8589020	+	Missense_Mutation	SNP	C	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR87	53836	broad.mit.edu	37	3	151012145	151012145	+	Missense_Mutation	SNP	C	G	G			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPRIN1	114787	broad.mit.edu	37	5	176026677	176026677	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPX6	257202	broad.mit.edu	37	6	28473411	28473411	+	Intron	SNP	A	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRAP2	9402	broad.mit.edu	37	22	40367050	40367050	+	Missense_Mutation	SNP	C	T	T	rs12759		TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRB7	2886	broad.mit.edu	37	17	37900435	37900435	+	Missense_Mutation	SNP	A	G	G			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GREB1	9687	broad.mit.edu	37	2	11742500	11742501	+	Intron	INS	-	TT	TT			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRIA2	2891	broad.mit.edu	37	4	158224837	158224837	+	Silent	SNP	A	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRID2	2895	broad.mit.edu	37	4	94411820	94411820	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRIK4	2900	broad.mit.edu	37	11	120531062	120531062	+	Missense_Mutation	SNP	C	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRIN2A	2903	broad.mit.edu	37	16	9984826	9984826	+	Intron	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRINL1A	81488	broad.mit.edu	37	15	58001046	58001046	+	Missense_Mutation	SNP	A	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRIP1	23426	broad.mit.edu	37	12	66859187	66859187	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRM1	2911	broad.mit.edu	37	6	146720217	146720217	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GTF3C1	2975	broad.mit.edu	37	16	27492362	27492362	+	Intron	SNP	T	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GTPBP10	85865	broad.mit.edu	37	7	89984595	89984595	+	Intron	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GUCY2F	2986	broad.mit.edu	37	X	108631743	108631743	+	Silent	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GUSBP1	728411	broad.mit.edu	37	5	21459558	21459558	+	5'Flank	SNP	G	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HAPLN4	404037	broad.mit.edu	37	19	19380641	19380641	+	Intron	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HAUS3	79441	broad.mit.edu	37	4	2238063	2238063	+	Silent	SNP	T	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HAUS4	54930	broad.mit.edu	37	14	23419681	23419681	+	Intron	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HAUS6	54801	broad.mit.edu	37	9	19056230	19056230	+	3'UTR	SNP	C	G	G			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HAVCR1	26762	broad.mit.edu	37	5	156479626	156479626	+	Missense_Mutation	SNP	G	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HCN3	57657	broad.mit.edu	37	1	155254832	155254833	+	Intron	DNP	GG	AT	AT			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HDAC6	10013	broad.mit.edu	37	X	48678440	48678440	+	Intron	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HDAC9	9734	broad.mit.edu	37	7	18869149	18869149	+	Frame_Shift_Del	DEL	G	-	-			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HEPACAM2	253012	broad.mit.edu	37	7	92838067	92838067	+	Missense_Mutation	SNP	A	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HEPH	9843	broad.mit.edu	37	X	65486250	65486250	+	Intron	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HERC1	8925	broad.mit.edu	37	15	63955193	63955193	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HERC2	8924	broad.mit.edu	37	15	28380867	28380867	+	Intron	SNP	C	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HERPUD2	64224	broad.mit.edu	37	7	35673874	35673874	+	Intron	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HEXB	3074	broad.mit.edu	37	5	74016442	74016442	+	Intron	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HGF	3082	broad.mit.edu	37	7	81334734	81334734	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HGF	3082	broad.mit.edu	37	7	81334976	81334976	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HINT1	3094	broad.mit.edu	37	5	130500840	130500840	+	Missense_Mutation	SNP	C	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HIST2H2BF	440689	broad.mit.edu	37	1	149399187	149399187	+	RNA	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HIVEP1	3096	broad.mit.edu	37	6	12123583	12123583	+	Silent	SNP	C	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HIVEP3	59269	broad.mit.edu	37	1	42046123	42046123	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HK3	3101	broad.mit.edu	37	5	176314464	176314464	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HLTF	6596	broad.mit.edu	37	3	148757980	148757980	+	Intron	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HLX	3142	broad.mit.edu	37	1	221057723	221057723	+	Nonsense_Mutation	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HMCN1	83872	broad.mit.edu	37	1	186023012	186023012	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HMGXB3	22993	broad.mit.edu	37	5	149401296	149401296	+	Intron	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HOOK1	51361	broad.mit.edu	37	1	60312847	60312847	+	Missense_Mutation	SNP	G	C	C			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HPS3	84343	broad.mit.edu	37	3	148857790	148857790	+	Splice_Site	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HPS5	11234	broad.mit.edu	37	11	18313051	18313051	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HPSE2	60495	broad.mit.edu	37	10	100453571	100453571	+	Intron	SNP	T	C	C			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HPX	3263	broad.mit.edu	37	11	6461961	6461961	+	Splice_Site	SNP	C	G	G	rs113971031		TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HRSP12	10247	broad.mit.edu	37	8	99129331	99129331	+	5'UTR	SNP	G	C	C			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HS3ST2	9956	broad.mit.edu	37	16	22826315	22826315	+	Silent	SNP	G	C	C			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HSD17B7P2	158160	broad.mit.edu	37	10	38654562	38654562	+	Intron	SNP	G	C	C			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HSD3B2	3284	broad.mit.edu	37	1	119987869	119987869	+	3'UTR	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HSP90AA1	3320	broad.mit.edu	37	14	102548655	102548655	+	Missense_Mutation	SNP	T	C	C			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HSPA13	6782	broad.mit.edu	37	21	15750613	15750613	+	Missense_Mutation	SNP	G	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HSPBAP1	79663	broad.mit.edu	37	3	122459941	122459941	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HSPG2	3339	broad.mit.edu	37	1	22176466	22176466	+	Intron	SNP	C	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HTR1B	3351	broad.mit.edu	37	6	78172306	78172306	+	Nonsense_Mutation	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HTR2C	3358	broad.mit.edu	37	X	114141823	114141823	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HUWE1	10075	broad.mit.edu	37	X	53652829	53652852	+	Intron	DEL	GCCGGGGCCGGGGCCGGGGCCGGT	-	-	rs78801842	by1000genomes	TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HYAL3	8372	broad.mit.edu	37	3	50332756	50332756	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HYAL4	23553	broad.mit.edu	37	7	123508270	123508270	+	Intron	SNP	T	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HYDIN	54768	broad.mit.edu	37	16	71149585	71149585	+	Intron	SNP	G	C	C			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IFI16	3428	broad.mit.edu	37	1	159019453	159019453	+	Intron	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IFITM2	10581	broad.mit.edu	37	11	308077	308077	+	5'Flank	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IFNA6	3443	broad.mit.edu	37	9	21350457	21350457	+	Missense_Mutation	SNP	T	C	C			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IFT172	26160	broad.mit.edu	37	2	27700260	27700260	+	Intron	SNP	G	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IGDCC3	9543	broad.mit.edu	37	15	65622728	65622728	+	Silent	SNP	A	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IGDCC4	57722	broad.mit.edu	37	15	65677373	65677373	+	Silent	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IGDCC4	57722	broad.mit.edu	37	15	65702597	65702597	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IGF2BP2	10644	broad.mit.edu	37	3	185407475	185407475	+	Intron	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IGF2R	3482	broad.mit.edu	37	6	160480035	160480035	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IGFBP3	3486	broad.mit.edu	37	7	45956766	45956766	+	Intron	SNP	T	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IGSF1	3547	broad.mit.edu	37	X	130423167	130423167	+	Intron	SNP	C	G	G			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IGSF3	3321	broad.mit.edu	37	1	117127668	117127668	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IGSF3	3321	broad.mit.edu	37	1	117146107	117146107	+	Intron	SNP	G	C	C			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL15RA	3601	broad.mit.edu	37	10	6001727	6001727	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL2RB	3560	broad.mit.edu	37	22	37524495	37524495	+	Missense_Mutation	SNP	T	G	G			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL4R	3566	broad.mit.edu	37	16	27372040	27372040	+	Intron	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL9R	3581	broad.mit.edu	37	X	155231224	155231224	+	Intron	SNP	T	C	C			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ILVBL	10994	broad.mit.edu	37	19	15233752	15233752	+	Silent	SNP	A	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
INO80D	54891	broad.mit.edu	37	2	206893116	206893116	+	Intron	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
INSRR	3645	broad.mit.edu	37	1	156813135	156813135	+	Intron	SNP	G	C	C			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
INTS6	26512	broad.mit.edu	37	13	51942033	51942033	+	Silent	SNP	T	C	C			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IQCD	115811	broad.mit.edu	37	12	113645112	113645112	+	Intron	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IQSEC3	440073	broad.mit.edu	37	12	274680	274680	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IQUB	154865	broad.mit.edu	37	7	123142940	123142940	+	Intron	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IRGC	56269	broad.mit.edu	37	19	44223254	44223254	+	Missense_Mutation	SNP	C	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IRS1	3667	broad.mit.edu	37	2	227661390	227661390	+	Missense_Mutation	SNP	C	A	A	rs141094678	byFrequency	TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGA10	8515	broad.mit.edu	37	1	145532959	145532959	+	Intron	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGA2B	3674	broad.mit.edu	37	17	42457994	42457994	+	Nonsense_Mutation	SNP	G	T	T	rs78218617		TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGA2B	3674	broad.mit.edu	37	17	42461732	42461732	+	Intron	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGA2	3673	broad.mit.edu	37	5	52357001	52357001	+	Intron	SNP	G	C	C			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGA8	8516	broad.mit.edu	37	10	15702827	15702827	+	Intron	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGAD	3681	broad.mit.edu	37	16	31409184	31409185	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGAE	3682	broad.mit.edu	37	17	3656700	3656700	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGAL	3683	broad.mit.edu	37	16	30495320	30495320	+	Intron	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGAL	3683	broad.mit.edu	37	16	30532894	30532894	+	Missense_Mutation	SNP	G	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGAM	3684	broad.mit.edu	37	16	31308933	31308933	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGAX	3687	broad.mit.edu	37	16	31383914	31383914	+	Intron	SNP	G	C	C			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITIH5L	347365	broad.mit.edu	37	X	54817240	54817240	+	Intron	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITIH5	80760	broad.mit.edu	37	10	7658913	7658913	+	Intron	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITIH5	80760	broad.mit.edu	37	10	7684117	7684117	+	Intron	SNP	C	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITK	3702	broad.mit.edu	37	5	156608057	156608057	+	Silent	SNP	C	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITPRIPL1	150771	broad.mit.edu	37	2	96992329	96992329	+	Intron	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITPRIPL2	162073	broad.mit.edu	37	16	19127126	19127126	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITSN2	50618	broad.mit.edu	37	2	24444073	24444073	+	Intron	SNP	C	G	G			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
JAK2	3717	broad.mit.edu	37	9	5089871	5089871	+	Intron	SNP	G	C	C			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
JAK3	3718	broad.mit.edu	37	19	17949121	17949121	+	Missense_Mutation	SNP	T	C	C	rs140690573		TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
JMJD1C	221037	broad.mit.edu	37	10	64975022	64975022	+	Splice_Site	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
JMJD1C	221037	broad.mit.edu	37	10	64976995	64976995	+	Missense_Mutation	SNP	G	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KALRN	8997	broad.mit.edu	37	3	124281868	124281868	+	Missense_Mutation	SNP	G	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KANK4	163782	broad.mit.edu	37	1	62734219	62734219	+	Intron	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNA2	3737	broad.mit.edu	37	1	111145926	111145926	+	Silent	SNP	G	C	C			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNA6	3742	broad.mit.edu	37	12	4920840	4920840	+	3'UTR	SNP	A	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCND2	3751	broad.mit.edu	37	7	120387728	120387728	+	Intron	SNP	C	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNH1	3756	broad.mit.edu	37	1	211032486	211032486	+	Intron	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNH1	3756	broad.mit.edu	37	1	211034922	211034922	+	Intron	SNP	C	G	G			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNH5	27133	broad.mit.edu	37	14	63316265	63316265	+	Intron	SNP	T	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNJ16	3773	broad.mit.edu	37	17	68128795	68128795	+	Silent	SNP	T	G	G			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNK10	54207	broad.mit.edu	37	14	88737034	88737034	+	Intron	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNK15	60598	broad.mit.edu	37	20	43379220	43379220	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNK18	338567	broad.mit.edu	37	10	118957067	118957067	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNK18	338567	broad.mit.edu	37	10	118969481	118969481	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNMB2	10242	broad.mit.edu	37	3	178546087	178546087	+	Missense_Mutation	SNP	T	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNN1	3780	broad.mit.edu	37	19	18085084	18085084	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNQ2	3785	broad.mit.edu	37	20	62077990	62077990	+	Intron	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNT2	343450	broad.mit.edu	37	1	196395110	196395110	+	Nonsense_Mutation	SNP	A	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNV1	27012	broad.mit.edu	37	8	110984377	110984377	+	Intron	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KDM1B	221656	broad.mit.edu	37	6	18208362	18208362	+	Splice_Site	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KDM4C	23081	broad.mit.edu	37	9	6984176	6984176	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KDM4DL	390245	broad.mit.edu	37	11	94759419	94759419	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KDR	3791	broad.mit.edu	37	4	55981471	55981471	+	Missense_Mutation	SNP	T	C	C			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KEL	3792	broad.mit.edu	37	7	142654981	142654981	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KHDRBS3	10656	broad.mit.edu	37	8	136594392	136594392	+	Intron	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA0174	9798	broad.mit.edu	37	16	71954700	71954700	+	Missense_Mutation	SNP	A	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA0564	23078	broad.mit.edu	37	13	42263515	42263515	+	Missense_Mutation	SNP	A	C	C			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA0564	23078	broad.mit.edu	37	13	42263517	42263517	+	Silent	SNP	T	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1211	57482	broad.mit.edu	37	4	57181776	57181776	+	Missense_Mutation	SNP	G	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1217	56243	broad.mit.edu	37	10	24810606	24810606	+	Intron	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1429	25962	broad.mit.edu	37	8	95524282	95524282	+	Silent	SNP	G	C	C			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1429	25962	broad.mit.edu	37	8	95539140	95539140	+	Silent	SNP	C	A	A	rs150793271		TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1462	57608	broad.mit.edu	37	10	30336559	30336559	+	Silent	SNP	C	G	G			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1683	80726	broad.mit.edu	37	19	18368671	18368671	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1731	85459	broad.mit.edu	37	11	93454778	93454778	+	Intron	SNP	A	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1797	54914	broad.mit.edu	37	9	20820325	20820325	+	Silent	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA2018	205717	broad.mit.edu	37	3	113376009	113376009	+	Missense_Mutation	SNP	T	C	C			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA2022	340533	broad.mit.edu	37	X	73961230	73961230	+	Missense_Mutation	SNP	A	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF18A	81930	broad.mit.edu	37	11	28098612	28098612	+	Missense_Mutation	SNP	T	C	C			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF19	124602	broad.mit.edu	37	17	72322435	72322435	+	5'UTR	SNP	T	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF24	347240	broad.mit.edu	37	9	34319136	34319136	+	Intron	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF27	55582	broad.mit.edu	37	9	86473945	86473945	+	Intron	SNP	A	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF2C	11004	broad.mit.edu	37	1	45205739	45205739	+	Intron	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF4A	24137	broad.mit.edu	37	X	69623846	69623846	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF5A	3798	broad.mit.edu	37	12	57962874	57962874	+	Intron	SNP	A	C	C			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF5A	3798	broad.mit.edu	37	12	57975705	57975705	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF5B	3799	broad.mit.edu	37	10	32306960	32306960	+	Intron	SNP	G	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIR3DL1	3811	broad.mit.edu	37	19	55330026	55330026	+	Silent	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIR3DL1	3811	broad.mit.edu	37	19	55346706	55346706	+	Intron	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIRREL2	84063	broad.mit.edu	37	19	36349667	36349667	+	Silent	SNP	T	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIRREL3	84623	broad.mit.edu	37	11	126319004	126319004	+	Nonsense_Mutation	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLHDC8A	55220	broad.mit.edu	37	1	205308824	205308824	+	Silent	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KMO	8564	broad.mit.edu	37	1	241725627	241725627	+	Nonsense_Mutation	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRT18	3875	broad.mit.edu	37	12	53344262	53344262	+	Intron	SNP	G	C	C			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRT28	162605	broad.mit.edu	37	17	38953536	38953536	+	Intron	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRT33B	3884	broad.mit.edu	37	17	39521339	39521339	+	Intron	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRT38	8687	broad.mit.edu	37	17	39594757	39594757	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRT6B	3854	broad.mit.edu	37	12	52843198	52843198	+	Intron	SNP	T	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRT73	319101	broad.mit.edu	37	12	53012247	53012247	+	Missense_Mutation	SNP	G	C	C			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRT76	51350	broad.mit.edu	37	12	53162448	53162448	+	3'UTR	SNP	T	C	C			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRTAP11-1	337880	broad.mit.edu	37	21	32253916	32253916	+	5'Flank	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRTAP13-3	337960	broad.mit.edu	37	21	31797994	31797994	+	Silent	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRTAP13-4	284827	broad.mit.edu	37	21	31802608	31802608	+	Nonsense_Mutation	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRTAP23-1	337963	broad.mit.edu	37	21	31720933	31720933	+	5'Flank	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRTAP4-12	83755	broad.mit.edu	37	17	39280335	39280335	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRTAP5-4	387267	broad.mit.edu	37	11	1643105	1643105	+	Silent	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
L3MBTL3	84456	broad.mit.edu	37	6	130372452	130372452	+	Silent	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMA2	3908	broad.mit.edu	37	6	129775235	129775235	+	Intron	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMA5	3911	broad.mit.edu	37	20	60884947	60884948	+	Intron	INS	-	C	C			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMB1	3912	broad.mit.edu	37	7	107580556	107580556	+	Silent	SNP	G	T	T	rs141885441		TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LASS2	29956	broad.mit.edu	37	1	150940140	150940140	+	Missense_Mutation	SNP	C	G	G			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LASS4	79603	broad.mit.edu	37	19	8321907	8321907	+	Silent	SNP	G	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LATS2	26524	broad.mit.edu	37	13	21620173	21620173	+	5'UTR	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LCE2C	353140	broad.mit.edu	37	1	152648701	152648701	+	Silent	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LCK	3932	broad.mit.edu	37	1	32745436	32745436	+	Intron	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LCMT1	51451	broad.mit.edu	37	16	25189362	25189362	+	3'UTR	SNP	C	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LCMT2	9836	broad.mit.edu	37	15	43621883	43621883	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LEF1	51176	broad.mit.edu	37	4	109086191	109086191	+	Intron	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LEPR	3953	broad.mit.edu	37	1	66102767	66102767	+	3'UTR	SNP	G	C	C			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LGMN	5641	broad.mit.edu	37	14	93180256	93180256	+	Intron	SNP	C	G	G			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LHX8	431707	broad.mit.edu	37	1	75626632	75626632	+	3'UTR	SNP	T	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LILRB1	10859	broad.mit.edu	37	19	55142773	55142773	+	Intron	SNP	G	C	C			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LILRB1	10859	broad.mit.edu	37	19	55144093	55144093	+	Silent	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LILRB3	11025	broad.mit.edu	37	19	54721091	54721091	+	Silent	SNP	G	C	C			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LILRB4	11006	broad.mit.edu	37	19	55175015	55175015	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LINGO2	158038	broad.mit.edu	37	9	28150752	28150752	+	Intron	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LLGL2	3993	broad.mit.edu	37	17	73552068	73552068	+	Intron	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LMTK3	114783	broad.mit.edu	37	19	49004502	49004502	+	Intron	DEL	C	-	-			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC100101938	100101938	broad.mit.edu	37	13	19878848	19878848	+	Intron	SNP	G	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC100288778	100288778	broad.mit.edu	37	12	90858	90858	+	Missense_Mutation	SNP	G	C	C			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC284441	284441	broad.mit.edu	37	19	20370053	20370053	+	Silent	SNP	T	C	C			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC349196	349196	broad.mit.edu	37	8	7215635	7215635	+	5'Flank	SNP	A	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC389634	389634	broad.mit.edu	37	12	8519402	8519402	+	Intron	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC550112	550112	broad.mit.edu	37	4	68904846	68904846	+	Intron	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOXL3	84695	broad.mit.edu	37	2	74763528	74763528	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LPAL2	80350	broad.mit.edu	37	6	160887957	160887957	+	RNA	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LPAL2	80350	broad.mit.edu	37	6	160899605	160899605	+	RNA	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LPL	4023	broad.mit.edu	37	8	19805777	19805777	+	Missense_Mutation	SNP	G	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LPPR4	9890	broad.mit.edu	37	1	99772549	99772549	+	Silent	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LPPR5	163404	broad.mit.edu	37	1	99418657	99418657	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP12	29967	broad.mit.edu	37	8	105503207	105503207	+	Silent	SNP	T	C	C			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP1B	53353	broad.mit.edu	37	2	141055644	141055644	+	Intron	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP1B	53353	broad.mit.edu	37	2	141122263	141122263	+	Nonsense_Mutation	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP1B	53353	broad.mit.edu	37	2	141245256	141245256	+	Missense_Mutation	SNP	T	C	C			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP1B	53353	broad.mit.edu	37	2	141607683	141607683	+	Missense_Mutation	SNP	C	G	G			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP1B	53353	broad.mit.edu	37	2	141625694	141625694	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP1	4035	broad.mit.edu	37	12	57548038	57548038	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP1	4035	broad.mit.edu	37	12	57573723	57573723	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP4	4038	broad.mit.edu	37	11	46894697	46894697	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP4	4038	broad.mit.edu	37	11	46896301	46896301	+	Intron	SNP	G	C	C			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP4	4038	broad.mit.edu	37	11	46898324	46898325	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP4	4038	broad.mit.edu	37	11	46920180	46920180	+	Missense_Mutation	SNP	A	G	G			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP5	4041	broad.mit.edu	37	11	68204296	68204296	+	Intron	SNP	C	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP6	4040	broad.mit.edu	37	12	12334236	12334236	+	Missense_Mutation	SNP	C	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP8	7804	broad.mit.edu	37	1	53755277	53755277	+	Missense_Mutation	SNP	T	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC20	55222	broad.mit.edu	37	10	72083577	72083577	+	Intron	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC37A3	374819	broad.mit.edu	37	17	62850636	62850636	+	3'UTR	SNP	G	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC42	115353	broad.mit.edu	37	1	54426012	54426012	+	Intron	SNP	G	C	C			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC7	57554	broad.mit.edu	37	1	70446033	70446033	+	Intron	SNP	T	C	C			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC7	57554	broad.mit.edu	37	1	70482022	70482022	+	Intron	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRIQ1	84125	broad.mit.edu	37	12	85449967	85449967	+	Nonsense_Mutation	SNP	A	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRK2	120892	broad.mit.edu	37	12	40714814	40714814	+	Intron	SNP	C	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRTM1	347730	broad.mit.edu	37	2	80529463	80529463	+	Silent	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRTM4	80059	broad.mit.edu	37	2	77748805	77748805	+	5'UTR	SNP	C	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LY86	9450	broad.mit.edu	37	6	6588981	6588981	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LYST	1130	broad.mit.edu	37	1	235840334	235840335	+	Intron	DNP	CC	AT	AT	rs112755993		TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LYST	1130	broad.mit.edu	37	1	235969785	235969785	+	Missense_Mutation	SNP	T	C	C			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MACF1	23499	broad.mit.edu	37	1	39800883	39800883	+	Missense_Mutation	SNP	G	C	C			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MACF1	23499	broad.mit.edu	37	1	39802771	39802771	+	Intron	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MACF1	23499	broad.mit.edu	37	1	39845830	39845830	+	Intron	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MACF1	23499	broad.mit.edu	37	1	39853090	39853090	+	Missense_Mutation	SNP	C	G	G	rs151008241		TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAF1	84232	broad.mit.edu	37	8	145161148	145161148	+	Intron	SNP	A	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAGEC3	139081	broad.mit.edu	37	X	140983191	140983192	+	Missense_Mutation	DNP	AA	TT	TT			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAGI1	9223	broad.mit.edu	37	3	65367734	65367734	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MALT1	10892	broad.mit.edu	37	18	56401714	56401714	+	Intron	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAMLD1	10046	broad.mit.edu	37	X	149638713	149638713	+	Missense_Mutation	SNP	C	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAP2K3	5606	broad.mit.edu	37	17	21208481	21208481	+	Intron	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAP3K13	9175	broad.mit.edu	37	3	185136013	185136013	+	Intron	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAPKBP1	23005	broad.mit.edu	37	15	42110921	42110921	+	Intron	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MARCH4	57574	broad.mit.edu	37	2	217142255	217142255	+	Intron	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MARCH5	54708	broad.mit.edu	37	10	94111070	94111070	+	3'UTR	SNP	C	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAST4	375449	broad.mit.edu	37	5	66460666	66460666	+	Missense_Mutation	SNP	C	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAVS	57506	broad.mit.edu	37	20	3844800	3844800	+	Intron	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MBL2	4153	broad.mit.edu	37	10	54527923	54527923	+	Silent	SNP	G	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MC3R	4159	broad.mit.edu	37	20	54824621	54824621	+	Missense_Mutation	SNP	C	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MCF2L	23263	broad.mit.edu	37	13	113740614	113740614	+	Intron	SNP	A	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MCF2	4168	broad.mit.edu	37	X	138701681	138701681	+	Intron	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MCM8	84515	broad.mit.edu	37	20	5966774	5966774	+	Silent	SNP	A	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MED12L	116931	broad.mit.edu	37	3	151082916	151082916	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MED12L	116931	broad.mit.edu	37	3	151101662	151101662	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MED24	9862	broad.mit.edu	37	17	38183255	38183255	+	Missense_Mutation	SNP	C	G	G			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MEGF10	84466	broad.mit.edu	37	5	126667014	126667014	+	Missense_Mutation	SNP	T	G	G			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MEI1	150365	broad.mit.edu	37	22	42154566	42154566	+	Intron	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MEP1B	4225	broad.mit.edu	37	18	29790580	29790580	+	Missense_Mutation	SNP	T	C	C			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MEPE	56955	broad.mit.edu	37	4	88766351	88766351	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
METT10D	79066	broad.mit.edu	37	17	2367656	2367656	+	Intron	SNP	C	G	G			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
METTL6	131965	broad.mit.edu	37	3	15457374	15457374	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MFAP1	4236	broad.mit.edu	37	15	44102041	44102041	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MFSD9	84804	broad.mit.edu	37	2	103335231	103335231	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MGAM	8972	broad.mit.edu	37	7	141797479	141797479	+	Intron	SNP	G	C	C			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MIR1322	100302166	broad.mit.edu	37	8	10682928	10682928	+	RNA	SNP	T	C	C			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MIR422A	494334	broad.mit.edu	37	15	64163198	64163198	+	RNA	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MIR518C	574477	broad.mit.edu	37	19	54210889	54210889	+	5'Flank	SNP	G	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MIR519A1	574496	broad.mit.edu	37	19	54255706	54255706	+	RNA	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MIR519C	574466	broad.mit.edu	37	19	54189682	54189682	+	5'Flank	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MKX	283078	broad.mit.edu	37	10	28030410	28030410	+	Missense_Mutation	SNP	A	C	C			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MLL3	58508	broad.mit.edu	37	7	151904477	151904477	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MLL4	9757	broad.mit.edu	37	19	36212499	36212499	+	Silent	SNP	C	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MLL4	9757	broad.mit.edu	37	19	36227603	36227603	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MLLT3	4300	broad.mit.edu	37	9	20414102	20414102	+	Missense_Mutation	SNP	C	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MLN	4295	broad.mit.edu	37	6	33768771	33768771	+	Intron	SNP	A	G	G			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MMP10	4319	broad.mit.edu	37	11	102649462	102649462	+	Missense_Mutation	SNP	G	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MMP16	4325	broad.mit.edu	37	8	89053647	89053647	+	3'UTR	SNP	C	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MMP16	4325	broad.mit.edu	37	8	89068467	89068467	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MMP16	4325	broad.mit.edu	37	8	89128926	89128926	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MMP16	4325	broad.mit.edu	37	8	89128995	89128995	+	Intron	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MMP19	4327	broad.mit.edu	37	12	56234451	56234451	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MMP19	4327	broad.mit.edu	37	12	56234583	56234583	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MMP20	9313	broad.mit.edu	37	11	102487840	102487840	+	Intron	SNP	C	G	G			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MMP7	4316	broad.mit.edu	37	11	102394117	102394117	+	Missense_Mutation	SNP	T	C	C			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MMRN1	22915	broad.mit.edu	37	4	90857932	90857932	+	Missense_Mutation	SNP	A	G	G			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MPP4	58538	broad.mit.edu	37	2	202550695	202550695	+	Nonsense_Mutation	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MRPS21	54460	broad.mit.edu	37	1	150280583	150280583	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MS4A7	58475	broad.mit.edu	37	11	60157028	60157028	+	Missense_Mutation	SNP	T	C	C			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MSC	9242	broad.mit.edu	37	8	72754953	72754953	+	Silent	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MSH5	4439	broad.mit.edu	37	6	31712966	31712966	+	Intron	SNP	C	G	G			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTDH	92140	broad.mit.edu	37	8	98656964	98656964	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTHFD1L	25902	broad.mit.edu	37	6	151247379	151247379	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTR	4548	broad.mit.edu	37	1	236987547	236987548	+	Intron	DNP	GG	AT	AT			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTTP	4547	broad.mit.edu	37	4	100503247	100503247	+	Missense_Mutation	SNP	A	G	G			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC17	140453	broad.mit.edu	37	7	100677732	100677732	+	Missense_Mutation	SNP	C	A	A	rs150736052		TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC17	140453	broad.mit.edu	37	7	100684017	100684017	+	Nonsense_Mutation	SNP	T	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC4	4585	broad.mit.edu	37	3	195497124	195497124	+	Missense_Mutation	SNP	A	G	G			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MXRA5	25878	broad.mit.edu	37	X	3239784	3239784	+	Silent	SNP	T	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYBPC2	4606	broad.mit.edu	37	19	50958471	50958471	+	Silent	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYBPH	4608	broad.mit.edu	37	1	203144312	203144312	+	Intron	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYBPH	4608	broad.mit.edu	37	1	203144711	203144711	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYCBP2	23077	broad.mit.edu	37	13	77663000	77663000	+	Silent	SNP	T	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYCBP2	23077	broad.mit.edu	37	13	77669677	77669677	+	Missense_Mutation	SNP	C	G	G			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH2	4620	broad.mit.edu	37	17	10433048	10433048	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH6	4624	broad.mit.edu	37	14	23872547	23872547	+	Intron	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH7	4625	broad.mit.edu	37	14	23883196	23883196	+	Intron	SNP	T	C	C			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH7	4625	broad.mit.edu	37	14	23887531	23887531	+	Missense_Mutation	SNP	C	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYL12B	103910	broad.mit.edu	37	18	3277950	3277950	+	3'UTR	SNP	A	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYL4	4635	broad.mit.edu	37	17	45299181	45299181	+	Silent	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYLK2	85366	broad.mit.edu	37	20	30418704	30418704	+	Intron	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYLK	4638	broad.mit.edu	37	3	123419658	123419658	+	Missense_Mutation	SNP	G	C	C	rs140989388		TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYLK	4638	broad.mit.edu	37	3	123458924	123458924	+	Intron	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO10	4651	broad.mit.edu	37	5	16902613	16902613	+	Intron	SNP	C	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO18B	84700	broad.mit.edu	37	22	26343831	26343831	+	Intron	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO1B	4430	broad.mit.edu	37	2	192288585	192288585	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO1F	4542	broad.mit.edu	37	19	8619559	8619559	+	Missense_Mutation	SNP	C	G	G			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO1G	64005	broad.mit.edu	37	7	45004145	45004145	+	Intron	SNP	G	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO3A	53904	broad.mit.edu	37	10	26286106	26286106	+	Missense_Mutation	SNP	A	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO3B	140469	broad.mit.edu	37	2	171034898	171034898	+	Intron	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO7B	4648	broad.mit.edu	37	2	128351172	128351172	+	Missense_Mutation	SNP	C	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYOCD	93649	broad.mit.edu	37	17	12655670	12655670	+	Intron	SNP	G	C	C			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYOM1	8736	broad.mit.edu	37	18	3187492	3187492	+	Missense_Mutation	SNP	T	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYST3	7994	broad.mit.edu	37	8	41836297	41836297	+	Splice_Site	SNP	T	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
N4BP1	9683	broad.mit.edu	37	16	48585318	48585318	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NAT10	55226	broad.mit.edu	37	11	34163375	34163375	+	Intron	SNP	G	C	C			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NAV1	89796	broad.mit.edu	37	1	201687958	201687958	+	Intron	SNP	A	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NAV2	89797	broad.mit.edu	37	11	19854168	19854168	+	Intron	SNP	G	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NAV3	89795	broad.mit.edu	37	12	78400781	78400781	+	Missense_Mutation	SNP	A	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBAS	51594	broad.mit.edu	37	2	15358968	15358968	+	Missense_Mutation	SNP	C	G	G			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCAM1	4684	broad.mit.edu	37	11	113102911	113102911	+	Silent	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCAM2	4685	broad.mit.edu	37	21	22656612	22656612	+	Missense_Mutation	SNP	C	G	G			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCAM2	4685	broad.mit.edu	37	21	22841100	22841100	+	Missense_Mutation	SNP	G	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCAPD3	23310	broad.mit.edu	37	11	134022725	134022725	+	3'UTR	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCOA3	8202	broad.mit.edu	37	20	46279623	46279623	+	Intron	SNP	G	C	C			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NDUFS1	4719	broad.mit.edu	37	2	206991267	206991267	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NECAB1	64168	broad.mit.edu	37	8	91963393	91963393	+	Silent	SNP	T	C	C			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NEDD1	121441	broad.mit.edu	37	12	97328946	97328946	+	Missense_Mutation	SNP	G	C	C			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NEK1	4750	broad.mit.edu	37	4	170400445	170400445	+	Intron	SNP	C	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NEO1	4756	broad.mit.edu	37	15	73594951	73594951	+	Intron	SNP	T	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NETO2	81831	broad.mit.edu	37	16	47162481	47162481	+	Missense_Mutation	SNP	G	C	C			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NEUROG3	50674	broad.mit.edu	37	10	71332358	71332358	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NFAM1	150372	broad.mit.edu	37	22	42783046	42783046	+	Missense_Mutation	SNP	G	C	C			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NFATC2	4773	broad.mit.edu	37	20	50139611	50139611	+	Intron	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NHLH1	4807	broad.mit.edu	37	1	160340859	160340859	+	Missense_Mutation	SNP	A	G	G			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NID1	4811	broad.mit.edu	37	1	236180456	236180456	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NIN	51199	broad.mit.edu	37	14	51211095	51211095	+	Intron	SNP	A	G	G			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLGN4X	57502	broad.mit.edu	37	X	5947504	5947504	+	Intron	SNP	A	G	G			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLRP12	91662	broad.mit.edu	37	19	54314539	54314539	+	Missense_Mutation	SNP	G	C	C			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLRP13	126204	broad.mit.edu	37	19	56436007	56436008	+	Nonsense_Mutation	DNP	CC	AA	AA			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLRP3	114548	broad.mit.edu	37	1	247588721	247588721	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLRP3	114548	broad.mit.edu	37	1	247608039	247608039	+	Missense_Mutation	SNP	T	G	G			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLRP7	199713	broad.mit.edu	37	19	55450172	55450172	+	Intron	SNP	A	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NOS1	4842	broad.mit.edu	37	12	117658102	117658102	+	Intron	SNP	G	C	C			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NOTCH3	4854	broad.mit.edu	37	19	15273348	15273348	+	Silent	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NOTCH3	4854	broad.mit.edu	37	19	15298035	15298035	+	Missense_Mutation	SNP	T	C	C			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NOTCH4	4855	broad.mit.edu	37	6	32181560	32181560	+	Missense_Mutation	SNP	C	G	G			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NOTCH4	4855	broad.mit.edu	37	6	32188027	32188027	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NOVA2	4858	broad.mit.edu	37	19	46443365	46443365	+	Missense_Mutation	SNP	G	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NOX3	50508	broad.mit.edu	37	6	155728350	155728350	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NPHP1	4867	broad.mit.edu	37	2	110881425	110881425	+	Missense_Mutation	SNP	A	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NPHS1	4868	broad.mit.edu	37	19	36340177	36340177	+	Silent	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRG1	3084	broad.mit.edu	37	8	32621438	32621438	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRG2	9542	broad.mit.edu	37	5	139231259	139231259	+	Silent	SNP	G	T	T	rs141346193		TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRP1	8829	broad.mit.edu	37	10	33496628	33496628	+	Missense_Mutation	SNP	T	C	C			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRP1	8829	broad.mit.edu	37	10	33502706	33502706	+	Intron	SNP	A	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRP2	8828	broad.mit.edu	37	2	206640996	206640996	+	Intron	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRXN3	9369	broad.mit.edu	37	14	79176039	79176039	+	Intron	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NT5C3L	115024	broad.mit.edu	37	17	39985171	39985171	+	Silent	SNP	G	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NT5DC3	51559	broad.mit.edu	37	12	104200708	104200708	+	Splice_Site	SNP	C	G	G			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NTN4	59277	broad.mit.edu	37	12	96180796	96180796	+	Missense_Mutation	SNP	C	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NTSR1	4923	broad.mit.edu	37	20	61386226	61386226	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NTSR2	23620	broad.mit.edu	37	2	11802408	11802408	+	Intron	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NUFIP2	57532	broad.mit.edu	37	17	27613955	27613955	+	Missense_Mutation	SNP	C	G	G			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NUP188	23511	broad.mit.edu	37	9	131730714	131730714	+	Intron	SNP	A	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NUP188	23511	broad.mit.edu	37	9	131752577	131752577	+	Intron	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NUP205	23165	broad.mit.edu	37	7	135290944	135290944	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NXF3	56000	broad.mit.edu	37	X	102335170	102335170	+	Intron	SNP	A	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NYNRIN	57523	broad.mit.edu	37	14	24883947	24883947	+	Missense_Mutation	SNP	G	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NYX	60506	broad.mit.edu	37	X	41333679	41333679	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OBFC1	79991	broad.mit.edu	37	10	105659991	105659991	+	Intron	SNP	T	C	C			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OC90	729330	broad.mit.edu	37	8	133053387	133053387	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OGDHL	55753	broad.mit.edu	37	10	50953905	50953905	+	Missense_Mutation	SNP	T	C	C			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OLA1	29789	broad.mit.edu	37	2	175006616	175006616	+	Silent	SNP	G	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OLFM3	118427	broad.mit.edu	37	1	102290605	102290605	+	Missense_Mutation	SNP	A	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR10G2	26534	broad.mit.edu	37	14	22102200	22102200	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR10J3	441911	broad.mit.edu	37	1	159284477	159284477	+	5'Flank	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR10Z1	128368	broad.mit.edu	37	1	158577045	158577045	+	Missense_Mutation	SNP	C	G	G			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR11A1	26531	broad.mit.edu	37	6	29395248	29395248	+	Silent	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR1N2	138882	broad.mit.edu	37	9	125315694	125315694	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2AG2	338755	broad.mit.edu	37	11	6789843	6789844	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2AK2	391191	broad.mit.edu	37	1	248129102	248129102	+	Missense_Mutation	SNP	T	C	C			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2C3	81472	broad.mit.edu	37	1	247694964	247694964	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2D3	120775	broad.mit.edu	37	11	6942649	6942649	+	Silent	SNP	T	C	C	rs146817618		TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2F2	135948	broad.mit.edu	37	7	143632642	143632642	+	Frame_Shift_Del	DEL	C	-	-			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2G3	81469	broad.mit.edu	37	1	247768905	247768905	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2L2	26246	broad.mit.edu	37	1	248202598	248202598	+	3'UTR	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2M2	391194	broad.mit.edu	37	1	248344004	248344004	+	Silent	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2M5	127059	broad.mit.edu	37	1	248308455	248308455	+	Silent	SNP	A	G	G			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2T10	127069	broad.mit.edu	37	1	248757048	248757048	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2T12	127064	broad.mit.edu	37	1	248458220	248458220	+	Missense_Mutation	SNP	C	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2T3	343173	broad.mit.edu	37	1	248637465	248637465	+	Missense_Mutation	SNP	A	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2T8	343172	broad.mit.edu	37	1	248085108	248085109	+	Frame_Shift_Ins	INS	-	A	A	rs4625315	by1000genomes	TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2W3	343171	broad.mit.edu	37	1	248059679	248059679	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4C16	219428	broad.mit.edu	37	11	55340095	55340095	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4D11	219986	broad.mit.edu	37	11	59271283	59271283	+	Missense_Mutation	SNP	C	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4D2	124538	broad.mit.edu	37	17	56247135	56247135	+	Missense_Mutation	SNP	T	C	C			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4D6	219983	broad.mit.edu	37	11	59225169	59225169	+	Missense_Mutation	SNP	G	C	C			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4K5	79317	broad.mit.edu	37	14	20388855	20388855	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4K5	79317	broad.mit.edu	37	14	20389362	20389362	+	Silent	SNP	T	C	C			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4N5	390437	broad.mit.edu	37	14	20612100	20612100	+	Missense_Mutation	SNP	T	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR51T1	401665	broad.mit.edu	37	11	4904034	4904034	+	Missense_Mutation	SNP	G	T	T	rs151076376	byFrequency	TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR51V1	283111	broad.mit.edu	37	11	5221658	5221658	+	Silent	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR52A1	23538	broad.mit.edu	37	11	5173072	5173072	+	Silent	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR52K2	119774	broad.mit.edu	37	11	4470650	4470650	+	Silent	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR52N5	390075	broad.mit.edu	37	11	5799256	5799256	+	Silent	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR52R1	119695	broad.mit.edu	37	11	4824945	4824945	+	Silent	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR56B1	387748	broad.mit.edu	37	11	5758676	5758676	+	Silent	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR5A2	219981	broad.mit.edu	37	11	59189613	59189613	+	Frame_Shift_Del	DEL	C	-	-			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR5B12	390191	broad.mit.edu	37	11	58207590	58207590	+	Missense_Mutation	SNP	A	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR5D14	219436	broad.mit.edu	37	11	55563451	55563451	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR5D18	219438	broad.mit.edu	37	11	55587887	55587887	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR5F1	338674	broad.mit.edu	37	11	55761380	55761380	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR5K3	403277	broad.mit.edu	37	3	98110287	98110287	+	Missense_Mutation	SNP	C	A	A	rs114784912	byFrequency;by1000genomes	TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR5L2	26338	broad.mit.edu	37	11	55595294	55595294	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR5M8	219484	broad.mit.edu	37	11	56258857	56258857	+	5'Flank	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR5P3	120066	broad.mit.edu	37	11	7847205	7847205	+	Silent	SNP	C	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR5T1	390155	broad.mit.edu	37	11	56043109	56043109	+	5'Flank	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR5T3	390154	broad.mit.edu	37	11	56020511	56020511	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR5V1	81696	broad.mit.edu	37	6	29323886	29323886	+	Silent	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR6Q1	219952	broad.mit.edu	37	11	57799343	57799343	+	Nonsense_Mutation	SNP	C	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR6X1	390260	broad.mit.edu	37	11	123624810	123624810	+	Nonsense_Mutation	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR6Y1	391112	broad.mit.edu	37	1	158517516	158517516	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR7G1	125962	broad.mit.edu	37	19	9225719	9225719	+	Missense_Mutation	SNP	A	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR8J3	81168	broad.mit.edu	37	11	55904510	55904510	+	Missense_Mutation	SNP	G	C	C			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR8K5	219453	broad.mit.edu	37	11	55927529	55927529	+	Silent	SNP	G	T	T	rs147577134		TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR9K2	441639	broad.mit.edu	37	12	55524048	55524048	+	Missense_Mutation	SNP	T	C	C			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ORAI3	93129	broad.mit.edu	37	16	30964748	30964748	+	Frame_Shift_Del	DEL	G	-	-			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OSBPL8	114882	broad.mit.edu	37	12	76784400	76784400	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OSCP1	127700	broad.mit.edu	37	1	36884607	36884607	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OSCP1	127700	broad.mit.edu	37	1	36909673	36909673	+	Intron	SNP	A	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OSTalpha	200931	broad.mit.edu	37	3	195955804	195955804	+	Intron	SNP	T	C	C			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OTOA	146183	broad.mit.edu	37	16	21728154	21728154	+	Intron	SNP	T	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OXR1	55074	broad.mit.edu	37	8	107691480	107691480	+	Missense_Mutation	SNP	G	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
P4HB	5034	broad.mit.edu	37	17	79803679	79803679	+	Intron	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PABPC1P2	728773	broad.mit.edu	37	2	147346327	147346327	+	Nonsense_Mutation	SNP	A	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PABPN1	8106	broad.mit.edu	37	14	23793489	23793489	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PACS2	23241	broad.mit.edu	37	14	105814720	105814720	+	Intron	SNP	C	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PADI6	353238	broad.mit.edu	37	1	17708498	17708498	+	Missense_Mutation	SNP	A	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAK7	57144	broad.mit.edu	37	20	9547088	9547088	+	Intron	SNP	C	T	T	rs148946132	by1000genomes	TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAK7	57144	broad.mit.edu	37	20	9561157	9561158	+	Frame_Shift_Ins	INS	-	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PALB2	79728	broad.mit.edu	37	16	23640575	23640575	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PALB2	79728	broad.mit.edu	37	16	23646849	23646849	+	Missense_Mutation	SNP	T	G	G			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PALLD	23022	broad.mit.edu	37	4	169611826	169611826	+	Silent	SNP	C	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PARD3B	117583	broad.mit.edu	37	2	206480373	206480373	+	Nonsense_Mutation	SNP	A	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PATZ1	23598	broad.mit.edu	37	22	31722987	31722987	+	Missense_Mutation	SNP	T	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAX3	5077	broad.mit.edu	37	2	223158477	223158477	+	Intron	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAX5	5079	broad.mit.edu	37	9	36966657	36966657	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH10	57575	broad.mit.edu	37	4	134073228	134073228	+	Missense_Mutation	SNP	C	G	G			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH11X	27328	broad.mit.edu	37	X	91134011	91134011	+	Silent	SNP	A	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH15	65217	broad.mit.edu	37	10	55698648	55698648	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH15	65217	broad.mit.edu	37	10	56138580	56138580	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH17	27253	broad.mit.edu	37	13	58240955	58240955	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH18	54510	broad.mit.edu	37	4	138451556	138451556	+	Missense_Mutation	SNP	C	G	G			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHA13	56136	broad.mit.edu	37	5	140263618	140263618	+	Missense_Mutation	SNP	C	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHA6	56142	broad.mit.edu	37	5	140209049	140209049	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHA9	9752	broad.mit.edu	37	5	140229634	140229634	+	Nonsense_Mutation	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHB11	56125	broad.mit.edu	37	5	140580808	140580808	+	Missense_Mutation	SNP	C	G	G			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHB11	56125	broad.mit.edu	37	5	140581670	140581670	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHB3	56132	broad.mit.edu	37	5	140482259	140482259	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHB4	56131	broad.mit.edu	37	5	140502098	140502098	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHB8	56128	broad.mit.edu	37	5	140559505	140559505	+	Silent	SNP	G	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHGA1	56114	broad.mit.edu	37	5	140711649	140711649	+	Silent	SNP	C	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHGA4	56111	broad.mit.edu	37	5	140736259	140736260	+	Missense_Mutation	DNP	GG	CT	CT			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHGA5	56110	broad.mit.edu	37	5	140744467	140744467	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHGA8	9708	broad.mit.edu	37	5	140774114	140774114	+	Silent	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCF11	51585	broad.mit.edu	37	11	82882867	82882867	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCK1	5105	broad.mit.edu	37	20	56138123	56138123	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCLO	27445	broad.mit.edu	37	7	82387850	82387850	+	3'UTR	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCLO	27445	broad.mit.edu	37	7	82544780	82544780	+	Frame_Shift_Del	DEL	T	-	-			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCNX	22990	broad.mit.edu	37	14	71444226	71444226	+	Missense_Mutation	SNP	G	C	C			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE10A	10846	broad.mit.edu	37	6	165801923	165801923	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE1C	5137	broad.mit.edu	37	7	31913022	31913022	+	Splice_Site	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE1C	5137	broad.mit.edu	37	7	32209517	32209517	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE3A	5139	broad.mit.edu	37	12	20766475	20766475	+	Silent	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE4B	5142	broad.mit.edu	37	1	66723362	66723362	+	Missense_Mutation	SNP	C	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE4B	5142	broad.mit.edu	37	1	66821341	66821341	+	Intron	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE4DIP	9659	broad.mit.edu	37	1	144866006	144866006	+	Intron	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDGFRA	5156	broad.mit.edu	37	4	54347829	54347829	+	Intron	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDGFRA	5156	broad.mit.edu	37	4	55152085	55152085	+	Silent	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDZD4	57595	broad.mit.edu	37	X	153070179	153070179	+	Silent	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDZD8	118987	broad.mit.edu	37	10	119043175	119043175	+	Silent	SNP	C	A	A	rs147188948		TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PEG3	5178	broad.mit.edu	37	19	57325840	57325840	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PEG3	5178	broad.mit.edu	37	19	57327572	57327572	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PER1	5187	broad.mit.edu	37	17	8051528	8051528	+	Silent	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PER2	8864	broad.mit.edu	37	2	239161493	239161493	+	Intron	SNP	G	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PER2	8864	broad.mit.edu	37	2	239161618	239161618	+	Missense_Mutation	SNP	C	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PEX12	5193	broad.mit.edu	37	17	33904001	33904001	+	Intron	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PEX2	5828	broad.mit.edu	37	8	77895426	77895426	+	3'UTR	SNP	T	C	C			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PEX2	5828	broad.mit.edu	37	8	77896445	77896445	+	Intron	SNP	C	G	G			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PGBD5	79605	broad.mit.edu	37	1	230492710	230492710	+	Missense_Mutation	SNP	T	C	C			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PGLYRP4	57115	broad.mit.edu	37	1	153309769	153309769	+	Silent	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PHACTR3	116154	broad.mit.edu	37	20	58330469	58330469	+	Intron	SNP	C	G	G			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PHACTR3	116154	broad.mit.edu	37	20	58348388	58348388	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PHF20L1	51105	broad.mit.edu	37	8	133807005	133807005	+	Silent	SNP	G	C	C			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PHF20L1	51105	broad.mit.edu	37	8	133829707	133829707	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PHF21B	112885	broad.mit.edu	37	22	45312390	45312390	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PHGDH	26227	broad.mit.edu	37	1	120277742	120277742	+	Intron	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIAS3	10401	broad.mit.edu	37	1	145578347	145578347	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIGT	51604	broad.mit.edu	37	20	44048032	44048032	+	Silent	SNP	C	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIK3AP1	118788	broad.mit.edu	37	10	98408476	98408476	+	Silent	SNP	G	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIK3CG	5294	broad.mit.edu	37	7	106508290	106508290	+	Missense_Mutation	SNP	A	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIK3R2	5296	broad.mit.edu	37	19	18273927	18273927	+	Silent	SNP	G	C	C			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIP5K1A	8394	broad.mit.edu	37	1	151206944	151206944	+	Missense_Mutation	SNP	T	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIP5K1B	8395	broad.mit.edu	37	9	71403943	71403943	+	Intron	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PKD1L1	168507	broad.mit.edu	37	7	47930110	47930110	+	Intron	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PKD1L2	114780	broad.mit.edu	37	16	81181756	81181756	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PKHD1L1	93035	broad.mit.edu	37	8	110420267	110420267	+	Intron	SNP	C	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PKHD1L1	93035	broad.mit.edu	37	8	110456827	110456827	+	Intron	SNP	A	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PKHD1L1	93035	broad.mit.edu	37	8	110477060	110477060	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLB1	151056	broad.mit.edu	37	2	28755041	28755041	+	Silent	SNP	C	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLCB1	23236	broad.mit.edu	37	20	8782749	8782749	+	Intron	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLCB3	5331	broad.mit.edu	37	11	64023045	64023045	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLCG1	5335	broad.mit.edu	37	20	39800785	39800785	+	Intron	SNP	T	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLCG2	5336	broad.mit.edu	37	16	81929597	81929597	+	Intron	SNP	A	G	G			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLCZ1	89869	broad.mit.edu	37	12	18865880	18865880	+	Missense_Mutation	SNP	A	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLD4	122618	broad.mit.edu	37	14	105398445	105398445	+	Silent	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLD5	200150	broad.mit.edu	37	1	242253272	242253272	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLEC	5339	broad.mit.edu	37	8	145016545	145016545	+	Intron	SNP	C	G	G			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLEKHB2	55041	broad.mit.edu	37	2	132109567	132109567	+	Intron	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLEKHB2	55041	broad.mit.edu	37	2	132110251	132110251	+	Intron	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLEKHG4B	153478	broad.mit.edu	37	5	163417	163417	+	Missense_Mutation	SNP	A	G	G			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLEKHG4B	153478	broad.mit.edu	37	5	182099	182099	+	Intron	SNP	T	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLG	5340	broad.mit.edu	37	6	161152045	161152045	+	Intron	DEL	C	-	-			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLOD3	8985	broad.mit.edu	37	7	100850973	100850973	+	Silent	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLP1	5354	broad.mit.edu	37	X	103041621	103041621	+	Missense_Mutation	SNP	A	G	G			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLUNC	51297	broad.mit.edu	37	20	31828099	31828099	+	Missense_Mutation	SNP	C	G	G			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLXDC2	84898	broad.mit.edu	37	10	20290820	20290820	+	Missense_Mutation	SNP	A	G	G			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLXNA4	91584	broad.mit.edu	37	7	131912382	131912382	+	Intron	SNP	G	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLXNB1	5364	broad.mit.edu	37	3	48465380	48465380	+	Missense_Mutation	SNP	T	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLXNB3	5365	broad.mit.edu	37	X	153041515	153041515	+	Silent	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PMF1	11243	broad.mit.edu	37	1	156209462	156209462	+	3'UTR	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PML	5371	broad.mit.edu	37	15	74337270	74337270	+	Missense_Mutation	SNP	C	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PNPLA8	50640	broad.mit.edu	37	7	108151152	108151152	+	Intron	SNP	G	C	C			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POF1B	79983	broad.mit.edu	37	X	84570664	84570664	+	Intron	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POGZ	23126	broad.mit.edu	37	1	151377695	151377695	+	Silent	SNP	G	C	C			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POLR2G	5436	broad.mit.edu	37	11	62532641	62532641	+	Intron	SNP	A	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POM121L12	285877	broad.mit.edu	37	7	53103455	53103455	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POTEG	404785	broad.mit.edu	37	14	19571451	19571451	+	Intron	SNP	T	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POU2AF1	5450	broad.mit.edu	37	11	111249803	111249803	+	Intron	SNP	A	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POU4F2	5458	broad.mit.edu	37	4	147561855	147561855	+	Missense_Mutation	SNP	C	G	G			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPAPDC3	84814	broad.mit.edu	37	9	134165627	134165627	+	Silent	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPARGC1B	133522	broad.mit.edu	37	5	149210212	149210212	+	Intron	SNP	C	G	G			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPFIA1	8500	broad.mit.edu	37	11	70171046	70171046	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPFIA4	8497	broad.mit.edu	37	1	203024848	203024848	+	Intron	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPP1CA	5499	broad.mit.edu	37	11	67168700	67168700	+	Intron	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPP1R13L	10848	broad.mit.edu	37	19	45901276	45901276	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPP1R14D	54866	broad.mit.edu	37	15	41120575	41120575	+	Intron	SNP	T	C	C			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPP1R16B	26051	broad.mit.edu	37	20	37529274	37529274	+	Missense_Mutation	SNP	T	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPP1R16B	26051	broad.mit.edu	37	20	37531465	37531465	+	Intron	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPP1R16B	26051	broad.mit.edu	37	20	37536304	37536304	+	Intron	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPP1R1C	151242	broad.mit.edu	37	2	182827155	182827155	+	Intron	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPP2R2B	5521	broad.mit.edu	37	5	146236146	146236146	+	Intron	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRAMEF2	65122	broad.mit.edu	37	1	12919417	12919417	+	Intron	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRAMEF4	400735	broad.mit.edu	37	1	12942103	12942103	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRDM9	56979	broad.mit.edu	37	5	23509603	23509603	+	Missense_Mutation	SNP	T	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRELP	5549	broad.mit.edu	37	1	203452913	203452913	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PREX1	57580	broad.mit.edu	37	20	47265980	47265980	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PREX1	57580	broad.mit.edu	37	20	47265982	47265982	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PREX1	57580	broad.mit.edu	37	20	47317280	47317280	+	Intron	SNP	T	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRICKLE1	144165	broad.mit.edu	37	12	42866307	42866307	+	Silent	SNP	C	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRKCI	5584	broad.mit.edu	37	3	169999075	169999075	+	Intron	SNP	G	C	C			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRKD3	23683	broad.mit.edu	37	2	37543459	37543459	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRKG1	5592	broad.mit.edu	37	10	53564495	53564495	+	Intron	SNP	T	C	C			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRMT5	10419	broad.mit.edu	37	14	23391639	23391639	+	Intron	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PROKR2	128674	broad.mit.edu	37	20	5283320	5283320	+	Missense_Mutation	SNP	A	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PROS1	5627	broad.mit.edu	37	3	93611874	93611874	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PROS1	5627	broad.mit.edu	37	3	93624698	93624698	+	Silent	SNP	A	G	G			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PROSC	11212	broad.mit.edu	37	8	37633506	37633508	+	Missense_Mutation	TNP	TGG	ATT	ATT			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRPSAP2	5636	broad.mit.edu	37	17	18781224	18781224	+	Intron	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRRG1	5638	broad.mit.edu	37	X	37312649	37312649	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSG11	5680	broad.mit.edu	37	19	43514114	43514114	+	3'UTR	SNP	C	G	G			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSG11	5680	broad.mit.edu	37	19	43523068	43523068	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSG2	5670	broad.mit.edu	37	19	43575948	43575948	+	Nonsense_Mutation	SNP	G	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSG2	5670	broad.mit.edu	37	19	43579540	43579540	+	Silent	SNP	G	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSG3	5671	broad.mit.edu	37	19	43233648	43233648	+	Intron	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSG5	5673	broad.mit.edu	37	19	43679260	43679260	+	Intron	SNP	G	C	C			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSG5	5673	broad.mit.edu	37	19	43680000	43680000	+	Intron	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSG6	5675	broad.mit.edu	37	19	43448242	43448242	+	Intron	SNP	G	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSG6	5675	broad.mit.edu	37	19	43527491	43527491	+	Intron	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSG6	5675	broad.mit.edu	37	19	43528960	43528960	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSG6	5675	broad.mit.edu	37	19	43571216	43571216	+	Intron	SNP	T	C	C			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSG6	5675	broad.mit.edu	37	19	43576774	43576774	+	Intron	SNP	C	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSMB9	5698	broad.mit.edu	37	6	32827219	32827219	+	Silent	SNP	G	C	C	rs145965388		TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSMD13	5719	broad.mit.edu	37	11	239091	239091	+	Intron	SNP	A	G	G			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSME2	5721	broad.mit.edu	37	14	24612835	24612835	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTBP2	58155	broad.mit.edu	37	1	97217100	97217100	+	Intron	SNP	G	C	C			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTCD1	26024	broad.mit.edu	37	7	99063829	99063829	+	5'Flank	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTN	5764	broad.mit.edu	37	7	136939584	136939584	+	Intron	SNP	C	G	G			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPN11	5781	broad.mit.edu	37	12	112939999	112939999	+	Missense_Mutation	SNP	G	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRC	5788	broad.mit.edu	37	1	198682150	198682150	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRD	5789	broad.mit.edu	37	9	8528611	8528611	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRH	5794	broad.mit.edu	37	19	55710186	55710186	+	Silent	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRN	5798	broad.mit.edu	37	2	220161136	220161136	+	Intron	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRT	11122	broad.mit.edu	37	20	40744000	40744001	+	Intron	DNP	GG	TA	TA			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRT	11122	broad.mit.edu	37	20	40944658	40944658	+	Intron	SNP	C	G	G	rs41279244	byFrequency;by1000genomes	TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRT	11122	broad.mit.edu	37	20	41514386	41514386	+	Intron	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRZ1	5803	broad.mit.edu	37	7	121612652	121612652	+	Missense_Mutation	SNP	T	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRZ1	5803	broad.mit.edu	37	7	121650794	121650794	+	Missense_Mutation	SNP	T	C	C			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTX4	390667	broad.mit.edu	37	16	1537990	1537990	+	Intron	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PXDNL	137902	broad.mit.edu	37	8	52320839	52320839	+	Silent	SNP	G	C	C			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PXDNL	137902	broad.mit.edu	37	8	52384864	52384864	+	Missense_Mutation	SNP	T	C	C			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PYY	5697	broad.mit.edu	37	17	42030614	42030614	+	Intron	SNP	G	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
QRICH2	84074	broad.mit.edu	37	17	74288492	74288492	+	Silent	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAB11FIP5	26056	broad.mit.edu	37	2	73315919	73315919	+	Intron	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAB19	401409	broad.mit.edu	37	7	140107369	140107369	+	Intron	SNP	T	C	C			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAB27B	5874	broad.mit.edu	37	18	52555129	52555129	+	Intron	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAB3GAP2	25782	broad.mit.edu	37	1	220363696	220363696	+	Intron	SNP	C	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAD1	5810	broad.mit.edu	37	5	34909397	34909397	+	Missense_Mutation	SNP	C	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAD21	5885	broad.mit.edu	37	8	117868937	117868937	+	Missense_Mutation	SNP	C	G	G			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RALGAPB	57148	broad.mit.edu	37	20	37163553	37163553	+	Intron	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RALGPS1	9649	broad.mit.edu	37	9	129961451	129961451	+	Intron	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RALGPS2	55103	broad.mit.edu	37	1	178858785	178858785	+	Frame_Shift_Del	DEL	G	-	-			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAPGEF3	10411	broad.mit.edu	37	12	48143136	48143136	+	Intron	SNP	G	C	C			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RARB	5915	broad.mit.edu	37	3	25622195	25622195	+	Silent	SNP	C	A	A	rs115482149	by1000genomes	TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RASAL1	8437	broad.mit.edu	37	12	113553489	113553489	+	Silent	SNP	C	T	T	rs137930457	byFrequency	TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RASGRP4	115727	broad.mit.edu	37	19	38910858	38910858	+	Missense_Mutation	SNP	T	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RASSF2	9770	broad.mit.edu	37	20	4778672	4778672	+	Missense_Mutation	SNP	T	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RB1	5925	broad.mit.edu	37	13	48953816	48953816	+	Intron	SNP	A	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RBM19	9904	broad.mit.edu	37	12	114377880	114377880	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RBM27	54439	broad.mit.edu	37	5	145617081	145617081	+	Intron	SNP	A	C	C			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RBM28	55131	broad.mit.edu	37	7	127970895	127970895	+	Missense_Mutation	SNP	T	C	C			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RBM44	375316	broad.mit.edu	37	2	238726448	238726448	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RBM6	10180	broad.mit.edu	37	3	50103766	50103767	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RBP2	5948	broad.mit.edu	37	3	139172010	139172010	+	Intron	SNP	T	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RBP4	5950	broad.mit.edu	37	10	95360226	95360226	+	Silent	SNP	G	C	C			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RBPMS2	348093	broad.mit.edu	37	15	65054748	65054748	+	Intron	SNP	A	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RC3H1	149041	broad.mit.edu	37	1	173947753	173947753	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RC3H2	54542	broad.mit.edu	37	9	125639640	125639640	+	Intron	SNP	C	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
REG1A	5967	broad.mit.edu	37	2	79348008	79348008	+	Nonsense_Mutation	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
REG1A	5967	broad.mit.edu	37	2	79348676	79348676	+	Intron	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
REG1B	5968	broad.mit.edu	37	2	79314050	79314050	+	Missense_Mutation	SNP	T	G	G			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
REG3A	5068	broad.mit.edu	37	2	79384330	79384330	+	3'UTR	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
REG3G	130120	broad.mit.edu	37	2	79253237	79253237	+	Silent	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RELB	5971	broad.mit.edu	37	19	45525533	45525533	+	Intron	SNP	A	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RELN	5649	broad.mit.edu	37	7	103131032	103131032	+	Intron	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RELN	5649	broad.mit.edu	37	7	103180963	103180963	+	Intron	SNP	A	G	G			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RELN	5649	broad.mit.edu	37	7	103244895	103244895	+	Missense_Mutation	SNP	T	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
REN	5972	broad.mit.edu	37	1	204135284	204135284	+	Intron	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RETN	56729	broad.mit.edu	37	19	7734387	7734387	+	Intron	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RET	5979	broad.mit.edu	37	10	43608348	43608348	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RFX3	5991	broad.mit.edu	37	9	3247999	3247999	+	Intron	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RFX3	5991	broad.mit.edu	37	9	3257050	3257050	+	Missense_Mutation	SNP	T	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RFX6	222546	broad.mit.edu	37	6	117237066	117237066	+	Intron	SNP	C	G	G			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RGP1	9827	broad.mit.edu	37	9	35751584	35751584	+	Intron	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RGPD3	653489	broad.mit.edu	37	2	107041516	107041516	+	Silent	SNP	A	G	G			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RGS18	64407	broad.mit.edu	37	1	192153423	192153423	+	Intron	SNP	C	G	G			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RGS4	5999	broad.mit.edu	37	1	163044417	163044417	+	3'UTR	SNP	T	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RGS7	6000	broad.mit.edu	37	1	240975308	240975309	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RHBG	57127	broad.mit.edu	37	1	156348337	156348337	+	Intron	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RHOU	58480	broad.mit.edu	37	1	228871772	228871772	+	Intron	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RIC3	79608	broad.mit.edu	37	11	8158923	8158923	+	Splice_Site	SNP	A	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RICTOR	253260	broad.mit.edu	37	5	38954987	38954987	+	Intron	SNP	A	G	G			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RIMS2	9699	broad.mit.edu	37	8	104987593	104987593	+	Missense_Mutation	SNP	G	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RIMS2	9699	broad.mit.edu	37	8	105263260	105263260	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RIMS2	9699	broad.mit.edu	37	8	105263899	105263899	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RIT2	6014	broad.mit.edu	37	18	40695528	40695528	+	5'UTR	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RLN1	6013	broad.mit.edu	37	9	5339747	5339747	+	5'UTR	SNP	C	T	T	rs149545634		TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RMND5A	64795	broad.mit.edu	37	2	87100602	87100602	+	Intron	SNP	C	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNF157	114804	broad.mit.edu	37	17	74157643	74157643	+	Silent	SNP	G	T	T	rs139660847		TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNF165	494470	broad.mit.edu	37	18	44027421	44027421	+	Intron	SNP	A	C	C			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNF17	56163	broad.mit.edu	37	13	25362201	25362201	+	Silent	SNP	C	T	T	rs79685389		TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNF180	285671	broad.mit.edu	37	5	63496779	63496780	+	Intron	DNP	GG	TT	TT			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNF180	285671	broad.mit.edu	37	5	63496832	63496832	+	Intron	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNF215	200312	broad.mit.edu	37	22	30782716	30782716	+	Silent	SNP	T	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNF39	80352	broad.mit.edu	37	6	30041008	30041008	+	Missense_Mutation	SNP	G	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ROBO3	64221	broad.mit.edu	37	11	124749648	124749648	+	Intron	SNP	G	C	C			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RORB	6096	broad.mit.edu	37	9	77257239	77257239	+	Intron	SNP	A	C	C			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RORB	6096	broad.mit.edu	37	9	77275592	77275592	+	Nonsense_Mutation	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RP1L1	94137	broad.mit.edu	37	8	10468702	10468702	+	Missense_Mutation	SNP	A	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RP1	6101	broad.mit.edu	37	8	55542651	55542651	+	Missense_Mutation	SNP	A	G	G			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPGRIP1	57096	broad.mit.edu	37	14	21794251	21794251	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPGR	6103	broad.mit.edu	37	X	38136076	38136076	+	Intron	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPL18A	6142	broad.mit.edu	37	19	17973044	17973044	+	Intron	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPN2	6185	broad.mit.edu	37	20	35832307	35832307	+	Missense_Mutation	SNP	A	G	G			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPS6KA1	6195	broad.mit.edu	37	1	26899666	26899666	+	Intron	SNP	C	G	G			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPS6KA5	9252	broad.mit.edu	37	14	91338348	91338348	+	3'UTR	SNP	T	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPTOR	57521	broad.mit.edu	37	17	78796123	78796124	+	Intron	DNP	GG	TT	TT			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RRBP1	6238	broad.mit.edu	37	20	17616121	17616121	+	Intron	SNP	C	G	G	rs147035013	by1000genomes	TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RSF1	51773	broad.mit.edu	37	11	77402170	77402170	+	Intron	SNP	C	G	G			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RSPO2	340419	broad.mit.edu	37	8	109094816	109094816	+	Missense_Mutation	SNP	A	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RTN1	6252	broad.mit.edu	37	14	60097107	60097107	+	Intron	SNP	C	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RTN1	6252	broad.mit.edu	37	14	60097113	60097113	+	Intron	SNP	C	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RTP2	344892	broad.mit.edu	37	3	187416408	187416408	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RUNX2	860	broad.mit.edu	37	6	45405800	45405800	+	Intron	SNP	C	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR1	6261	broad.mit.edu	37	19	38997149	38997149	+	Silent	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR1	6261	broad.mit.edu	37	19	39009862	39009862	+	Missense_Mutation	SNP	C	G	G			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR2	6262	broad.mit.edu	37	1	237659966	237659966	+	Missense_Mutation	SNP	A	G	G			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR2	6262	broad.mit.edu	37	1	237663962	237663962	+	Intron	SNP	T	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR2	6262	broad.mit.edu	37	1	237711850	237711850	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR2	6262	broad.mit.edu	37	1	237730037	237730038	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR2	6262	broad.mit.edu	37	1	237777524	237777524	+	Missense_Mutation	SNP	G	C	C			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR2	6262	broad.mit.edu	37	1	237806598	237806598	+	Intron	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR2	6262	broad.mit.edu	37	1	237811774	237811774	+	Missense_Mutation	SNP	C	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR2	6262	broad.mit.edu	37	1	237947550	237947550	+	Frame_Shift_Del	DEL	G	-	-			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR3	6263	broad.mit.edu	37	15	33893789	33893789	+	Intron	SNP	A	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR3	6263	broad.mit.edu	37	15	33990137	33990137	+	Silent	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR3	6263	broad.mit.edu	37	15	34015046	34015046	+	Silent	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
S100A7A	338324	broad.mit.edu	37	1	153390625	153390625	+	Missense_Mutation	SNP	C	T	T	rs146005479		TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
S1PR5	53637	broad.mit.edu	37	19	10624666	10624666	+	Missense_Mutation	SNP	G	C	C			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SAMD3	154075	broad.mit.edu	37	6	130465706	130465706	+	Nonsense_Mutation	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SASS6	163786	broad.mit.edu	37	1	100572836	100572836	+	Intron	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SATB2	23314	broad.mit.edu	37	2	200137222	200137222	+	Silent	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SBSN	374897	broad.mit.edu	37	19	36018706	36018706	+	Intron	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCAI	286205	broad.mit.edu	37	9	127730875	127730875	+	Intron	SNP	C	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCN4A	6329	broad.mit.edu	37	17	62020273	62020273	+	Missense_Mutation	SNP	C	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCN4A	6329	broad.mit.edu	37	17	62022924	62022924	+	Silent	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCN4A	6329	broad.mit.edu	37	17	62023011	62023011	+	Intron	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCN4A	6329	broad.mit.edu	37	17	62043670	62043670	+	Intron	SNP	C	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCP2	6342	broad.mit.edu	37	1	53480639	53480639	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SDHA	6389	broad.mit.edu	37	5	240507	240507	+	Silent	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEC61A2	55176	broad.mit.edu	37	10	12198007	12198007	+	Intron	SNP	A	G	G			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SECISBP2	79048	broad.mit.edu	37	9	91940984	91940984	+	Intron	SNP	G	C	C			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SECISBP2	79048	broad.mit.edu	37	9	91943769	91943769	+	Missense_Mutation	SNP	G	C	C			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SELP	6403	broad.mit.edu	37	1	169565348	169565348	+	Missense_Mutation	SNP	C	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SELP	6403	broad.mit.edu	37	1	169581475	169581475	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SELP	6403	broad.mit.edu	37	1	169586396	169586396	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEMA6B	10501	broad.mit.edu	37	19	4550174	4550174	+	Nonsense_Mutation	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEMA6D	80031	broad.mit.edu	37	15	48051992	48051992	+	5'UTR	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEMA6D	80031	broad.mit.edu	37	15	48056105	48056105	+	Missense_Mutation	SNP	T	C	C			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEMA6D	80031	broad.mit.edu	37	15	48063273	48063273	+	Missense_Mutation	SNP	A	G	G			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEPT10	151011	broad.mit.edu	37	2	110325410	110325410	+	Silent	SNP	C	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SERPINA12	145264	broad.mit.edu	37	14	94964191	94964191	+	Missense_Mutation	SNP	T	G	G			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SERPINA4	5267	broad.mit.edu	37	14	95030068	95030068	+	Silent	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SERPINB4	6318	broad.mit.edu	37	18	61328427	61328427	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SERPINI2	5276	broad.mit.edu	37	3	167167116	167167116	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SF3B5	83443	broad.mit.edu	37	6	144416503	144416503	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SGCA	6442	broad.mit.edu	37	17	48245272	48245272	+	Intron	SNP	C	G	G			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SHD	56961	broad.mit.edu	37	19	4290477	4290477	+	Silent	SNP	G	T	T	rs143192359		TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SHISA4	149345	broad.mit.edu	37	1	201858597	201858597	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SHROOM3	57619	broad.mit.edu	37	4	77660267	77660267	+	Missense_Mutation	SNP	G	T	T	rs140762344	byFrequency	TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SIGLEC10	89790	broad.mit.edu	37	19	51919589	51919589	+	Silent	SNP	G	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SIGLEC5	8778	broad.mit.edu	37	19	52132675	52132675	+	Silent	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SIGLEC7	27036	broad.mit.edu	37	19	51648275	51648275	+	Intron	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SIGLEC9	27180	broad.mit.edu	37	19	51630361	51630361	+	Missense_Mutation	SNP	G	C	C			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SIN3A	25942	broad.mit.edu	37	15	75684637	75684637	+	Missense_Mutation	SNP	T	C	C			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SIPA1L3	23094	broad.mit.edu	37	19	38689108	38689108	+	Silent	SNP	C	G	G			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SIX3	6496	broad.mit.edu	37	2	45169936	45169936	+	Silent	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SI	6476	broad.mit.edu	37	3	164709192	164709192	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SI	6476	broad.mit.edu	37	3	164714347	164714347	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SI	6476	broad.mit.edu	37	3	164781164	164781164	+	Intron	SNP	T	C	C			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SI	6476	broad.mit.edu	37	3	164781179	164781179	+	Intron	SNP	A	C	C			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SKIL	6498	broad.mit.edu	37	3	170108878	170108878	+	Nonsense_Mutation	SNP	C	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLAMF9	89886	broad.mit.edu	37	1	159923983	159923983	+	5'UTR	SNP	G	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC12A2	6558	broad.mit.edu	37	5	127446021	127446021	+	Intron	SNP	G	C	C			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC12A5	57468	broad.mit.edu	37	20	44663650	44663650	+	Missense_Mutation	SNP	A	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC12A9	56996	broad.mit.edu	37	7	100452392	100452392	+	Intron	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC16A6	9120	broad.mit.edu	37	17	66265122	66265122	+	3'UTR	SNP	A	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC17A3	10786	broad.mit.edu	37	6	25862555	25862555	+	Missense_Mutation	SNP	G	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC17A9	63910	broad.mit.edu	37	20	61595779	61595779	+	Intron	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC1A3	6507	broad.mit.edu	37	5	36608588	36608588	+	Silent	SNP	A	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC22A25	387601	broad.mit.edu	37	11	62931450	62931450	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC22A9	114571	broad.mit.edu	37	11	63143248	63143248	+	Intron	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC23A3	151295	broad.mit.edu	37	2	220034065	220034065	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC26A7	115111	broad.mit.edu	37	8	92364249	92364249	+	Intron	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC30A8	169026	broad.mit.edu	37	8	118174170	118174170	+	Intron	SNP	A	G	G			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC30A9	10463	broad.mit.edu	37	4	42077832	42077832	+	Intron	SNP	A	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC32A1	140679	broad.mit.edu	37	20	37356650	37356650	+	Missense_Mutation	SNP	A	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC38A9	153129	broad.mit.edu	37	5	54960597	54960597	+	Silent	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC39A2	29986	broad.mit.edu	37	14	21467867	21467867	+	Intron	SNP	T	G	G			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC45A2	51151	broad.mit.edu	37	5	33984644	33984644	+	Silent	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC47A1	55244	broad.mit.edu	37	17	19451487	19451487	+	Intron	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC4A3	6508	broad.mit.edu	37	2	220505177	220505177	+	Silent	SNP	G	C	C			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC5A10	125206	broad.mit.edu	37	17	18922899	18922899	+	Missense_Mutation	SNP	G	C	C			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC5A11	115584	broad.mit.edu	37	16	24888606	24888606	+	Missense_Mutation	SNP	A	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC6A19	340024	broad.mit.edu	37	5	1213663	1213663	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC7A14	57709	broad.mit.edu	37	3	170198682	170198682	+	Silent	SNP	A	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC8A1	6546	broad.mit.edu	37	2	40655842	40655842	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC9A6	10479	broad.mit.edu	37	X	135098852	135098852	+	Missense_Mutation	SNP	A	G	G			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLCO1B1	10599	broad.mit.edu	37	12	21392216	21392216	+	3'UTR	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLCO5A1	81796	broad.mit.edu	37	8	70744807	70744807	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLIT3	6586	broad.mit.edu	37	5	168114017	168114017	+	Missense_Mutation	SNP	T	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLIT3	6586	broad.mit.edu	37	5	168135007	168135007	+	Missense_Mutation	SNP	G	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLITRK5	26050	broad.mit.edu	37	13	88329568	88329568	+	Missense_Mutation	SNP	G	C	C			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMG5	23381	broad.mit.edu	37	1	156221156	156221156	+	Intron	SNP	G	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNORD115-11	100033448	broad.mit.edu	37	15	25432762	25432762	+	5'Flank	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNRPA1	6627	broad.mit.edu	37	15	101825088	101825088	+	Intron	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNRPN	6638	broad.mit.edu	37	15	25154280	25154280	+	Intron	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNUPN	10073	broad.mit.edu	37	15	75890754	75890754	+	Missense_Mutation	SNP	T	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNX15	29907	broad.mit.edu	37	11	64795011	64795011	+	Missense_Mutation	SNP	T	C	C			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SOAT2	8435	broad.mit.edu	37	12	53514557	53514557	+	Intron	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SOHLH2	54937	broad.mit.edu	37	13	36748988	36748988	+	Silent	SNP	G	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SORCS1	114815	broad.mit.edu	37	10	108367013	108367013	+	Missense_Mutation	SNP	G	C	C			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SORCS3	22986	broad.mit.edu	37	10	106907445	106907445	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SORL1	6653	broad.mit.edu	37	11	121429299	121429299	+	Splice_Site	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SOSTDC1	25928	broad.mit.edu	37	7	16502099	16502099	+	3'UTR	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPAG17	200162	broad.mit.edu	37	1	118550606	118550606	+	Intron	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPAG17	200162	broad.mit.edu	37	1	118574352	118574352	+	Missense_Mutation	SNP	A	G	G	rs144404732		TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPAG6	9576	broad.mit.edu	37	10	22700005	22700005	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPANXC	64663	broad.mit.edu	37	X	140358269	140358269	+	Intron	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPANXN1	494118	broad.mit.edu	37	X	144337404	144337404	+	3'UTR	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPATA16	83893	broad.mit.edu	37	3	172835231	172835231	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPATA22	84690	broad.mit.edu	37	17	3397779	3397779	+	Intron	SNP	G	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPDYE1	285955	broad.mit.edu	37	7	44046939	44046939	+	Silent	SNP	G	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPEF2	79925	broad.mit.edu	37	5	35644577	35644577	+	Nonsense_Mutation	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPEG	10290	broad.mit.edu	37	2	220350089	220350089	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPERT	220082	broad.mit.edu	37	13	46276958	46276958	+	Missense_Mutation	SNP	C	G	G			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPESP1	246777	broad.mit.edu	37	15	69238614	69238614	+	Missense_Mutation	SNP	C	G	G			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPHKAP	80309	broad.mit.edu	37	2	228855920	228855920	+	Intron	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPOCK3	50859	broad.mit.edu	37	4	167663171	167663171	+	Missense_Mutation	SNP	C	A	A	rs138814470		TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPON2	10417	broad.mit.edu	37	4	1161519	1161519	+	Intron	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPPL2B	56928	broad.mit.edu	37	19	2351683	2351683	+	Intron	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPTA1	6708	broad.mit.edu	37	1	158623284	158623284	+	Intron	SNP	C	G	G			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPTAN1	6709	broad.mit.edu	37	9	131369914	131369914	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPTBN2	6712	broad.mit.edu	37	11	66455621	66455621	+	Intron	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPTBN4	57731	broad.mit.edu	37	19	40995992	40995992	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPTB	6710	broad.mit.edu	37	14	65259901	65259901	+	Missense_Mutation	SNP	C	A	A	rs150013838		TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPTLC1	10558	broad.mit.edu	37	9	94821469	94821469	+	Missense_Mutation	SNP	C	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SRBD1	55133	broad.mit.edu	37	2	45646961	45646961	+	Missense_Mutation	SNP	C	G	G			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SRCAP	10847	broad.mit.edu	37	16	30723100	30723101	+	Intron	DNP	GG	TT	TT			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SRCAP	10847	broad.mit.edu	37	16	30750714	30750714	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SRC	6714	broad.mit.edu	37	20	36031073	36031073	+	Intron	SNP	G	C	C			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SRP19	6728	broad.mit.edu	37	5	112196947	112196947	+	5'Flank	SNP	G	C	C			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SRP19	6728	broad.mit.edu	37	5	112197201	112197201	+	Intron	SNP	C	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SRP68	6730	broad.mit.edu	37	17	74066576	74066576	+	Intron	SNP	C	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SRRM1	10250	broad.mit.edu	37	1	24977944	24977944	+	Missense_Mutation	SNP	T	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SSH1	54434	broad.mit.edu	37	12	109196147	109196147	+	Intron	SNP	G	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SSRP1	6749	broad.mit.edu	37	11	57095662	57095662	+	Intron	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SSX1	6756	broad.mit.edu	37	X	48117318	48117318	+	Intron	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ST18	9705	broad.mit.edu	37	8	53126713	53126713	+	Intron	SNP	A	G	G			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STAT4	6775	broad.mit.edu	37	2	191922631	191922631	+	Intron	SNP	A	G	G			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STIL	6491	broad.mit.edu	37	1	47717476	47717476	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STON2	85439	broad.mit.edu	37	14	81744278	81744278	+	Silent	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STRN3	29966	broad.mit.edu	37	14	31388178	31388178	+	Missense_Mutation	SNP	C	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STRN3	29966	broad.mit.edu	37	14	31416470	31416470	+	Splice_Site	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STX6	10228	broad.mit.edu	37	1	180945565	180945565	+	3'UTR	SNP	T	C	C			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STXBP5	134957	broad.mit.edu	37	6	147646094	147646094	+	Splice_Site	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SUN3	256979	broad.mit.edu	37	7	48068523	48068523	+	Missense_Mutation	SNP	T	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SUPT16H	11198	broad.mit.edu	37	14	21829178	21829178	+	Intron	SNP	T	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SURF6	6838	broad.mit.edu	37	9	136198959	136198959	+	Nonsense_Mutation	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SV2B	9899	broad.mit.edu	37	15	91803568	91803568	+	Missense_Mutation	SNP	G	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SVEP1	79987	broad.mit.edu	37	9	113241856	113241856	+	Intron	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SVIL	6840	broad.mit.edu	37	10	29819446	29819446	+	Intron	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYN2	6854	broad.mit.edu	37	3	12200174	12200174	+	Intron	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYNE1	23345	broad.mit.edu	37	6	152720814	152720814	+	Missense_Mutation	SNP	C	A	A	rs146099481	by1000genomes	TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYNE2	23224	broad.mit.edu	37	14	64421515	64421515	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYNJ1	8867	broad.mit.edu	37	21	34072116	34072116	+	Intron	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYT12	91683	broad.mit.edu	37	11	66811388	66811388	+	Intron	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYT5	6861	broad.mit.edu	37	19	55686395	55686395	+	Intron	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAAR6	319100	broad.mit.edu	37	6	132891538	132891538	+	Silent	SNP	C	A	A	rs8192622	byFrequency;by1000genomes	TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAB1	10454	broad.mit.edu	37	22	39777674	39777674	+	Intron	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAF1L	138474	broad.mit.edu	37	9	32633177	32633178	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAF1L	138474	broad.mit.edu	37	9	32633194	32633194	+	Missense_Mutation	SNP	A	G	G			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAF4B	6875	broad.mit.edu	37	18	23836000	23836000	+	Intron	SNP	G	C	C			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAF4	6874	broad.mit.edu	37	20	60551211	60551211	+	3'UTR	SNP	G	C	C			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAF5L	27097	broad.mit.edu	37	1	229730202	229730202	+	Missense_Mutation	SNP	C	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAS1R2	80834	broad.mit.edu	37	1	19180801	19180801	+	Missense_Mutation	SNP	A	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAS2R38	5726	broad.mit.edu	37	7	141673490	141673490	+	5'UTR	SNP	G	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBC1D4	9882	broad.mit.edu	37	13	75923288	75923288	+	Intron	SNP	A	G	G			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBX1	6899	broad.mit.edu	37	22	19750871	19750871	+	Intron	SNP	C	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBX3	6926	broad.mit.edu	37	12	115112511	115112511	+	Missense_Mutation	SNP	G	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TCEAL8	90843	broad.mit.edu	37	X	102508698	102508698	+	Missense_Mutation	SNP	C	G	G			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TCF4	6925	broad.mit.edu	37	18	53131372	53131372	+	Intron	DEL	G	-	-			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TCFL5	10732	broad.mit.edu	37	20	61490633	61490633	+	Intron	SNP	C	G	G			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TCN1	6947	broad.mit.edu	37	11	59622151	59622151	+	Silent	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TCP11	6954	broad.mit.edu	37	6	35088395	35088395	+	Silent	SNP	C	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TECPR2	9895	broad.mit.edu	37	14	102906564	102906564	+	Intron	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TECRL	253017	broad.mit.edu	37	4	65188442	65188442	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TEC	7006	broad.mit.edu	37	4	48173478	48173478	+	Intron	SNP	C	G	G			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TEP1	7011	broad.mit.edu	37	14	20856064	20856064	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TEX15	56154	broad.mit.edu	37	8	30702509	30702509	+	Missense_Mutation	SNP	A	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TEX15	56154	broad.mit.edu	37	8	30702944	30702944	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TFAP2B	7021	broad.mit.edu	37	6	50803869	50803869	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TFAP2D	83741	broad.mit.edu	37	6	50718983	50718983	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TFEC	22797	broad.mit.edu	37	7	115580691	115580691	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TFPI2	7980	broad.mit.edu	37	7	93516543	93516543	+	Intron	SNP	C	G	G			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TF	7018	broad.mit.edu	37	3	133473249	133473249	+	Intron	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TF	7018	broad.mit.edu	37	3	133494456	133494456	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TGFBR2	7048	broad.mit.edu	37	3	30733165	30733165	+	3'UTR	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TGIF2LX	90316	broad.mit.edu	37	X	89177796	89177796	+	Nonsense_Mutation	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TGM3	7053	broad.mit.edu	37	20	2290212	2290212	+	Intron	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TGM5	9333	broad.mit.edu	37	15	43552216	43552216	+	Intron	DEL	G	-	-			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TG	7038	broad.mit.edu	37	8	133931682	133931682	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TG	7038	broad.mit.edu	37	8	134034417	134034417	+	Intron	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
THOC6	79228	broad.mit.edu	37	16	3075832	3075832	+	Intron	SNP	C	G	G			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
THSD1	55901	broad.mit.edu	37	13	52952445	52952445	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
THSD4	79875	broad.mit.edu	37	15	71534924	71534924	+	Intron	SNP	C	G	G			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TIAM1	7074	broad.mit.edu	37	21	32526814	32526814	+	Intron	SNP	C	G	G			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TIAM1	7074	broad.mit.edu	37	21	32582356	32582356	+	Intron	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TKTL1	8277	broad.mit.edu	37	X	153556105	153556105	+	Intron	SNP	T	C	C			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TLK1	9874	broad.mit.edu	37	2	171910294	171910294	+	Nonsense_Mutation	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TLN1	7094	broad.mit.edu	37	9	35721817	35721817	+	Intron	SNP	G	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TLR4	7099	broad.mit.edu	37	9	120474985	120474985	+	Silent	SNP	A	C	C			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TLR4	7099	broad.mit.edu	37	9	120475619	120475619	+	Missense_Mutation	SNP	G	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TLR7	51284	broad.mit.edu	37	X	12905856	12905856	+	Silent	SNP	A	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TLR8	51311	broad.mit.edu	37	X	12940186	12940186	+	Silent	SNP	G	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TM7SF4	81501	broad.mit.edu	37	8	105361660	105361660	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TM7SF4	81501	broad.mit.edu	37	8	105368458	105368458	+	3'UTR	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMC8	147138	broad.mit.edu	37	17	76130348	76130348	+	Intron	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMCO4	255104	broad.mit.edu	37	1	20009760	20009760	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM100	55273	broad.mit.edu	37	17	53798315	53798315	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM132E	124842	broad.mit.edu	37	17	32959728	32959728	+	Silent	SNP	C	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM145	284339	broad.mit.edu	37	19	42824590	42824590	+	Splice_Site	SNP	G	C	C			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM161B	153396	broad.mit.edu	37	5	87492412	87492412	+	Intron	SNP	C	G	G			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM178	130733	broad.mit.edu	37	2	39944434	39944434	+	3'UTR	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM196	256130	broad.mit.edu	37	7	19765051	19765051	+	Intron	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM207	131920	broad.mit.edu	37	3	190147509	190147509	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM26	219623	broad.mit.edu	37	10	63170401	63170401	+	Silent	SNP	G	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM57	55219	broad.mit.edu	37	1	25824847	25824847	+	Missense_Mutation	SNP	G	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM63C	57156	broad.mit.edu	37	14	77715676	77715676	+	Missense_Mutation	SNP	A	G	G			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM67	91147	broad.mit.edu	37	8	94767133	94767133	+	5'UTR	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM67	91147	broad.mit.edu	37	8	94798502	94798502	+	Missense_Mutation	SNP	C	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMPRSS15	5651	broad.mit.edu	37	21	19704508	19704509	+	Intron	DNP	GG	TT	TT			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMTC1	83857	broad.mit.edu	37	12	29669431	29669431	+	Intron	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMTC4	84899	broad.mit.edu	37	13	101315270	101315270	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNNI3K	51086	broad.mit.edu	37	1	74819586	74819586	+	Intron	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNNT3	7140	broad.mit.edu	37	11	1944164	1944164	+	Intron	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNN	63923	broad.mit.edu	37	1	175049508	175049508	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNRC6C	57690	broad.mit.edu	37	17	76083231	76083231	+	Intron	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNS1	7145	broad.mit.edu	37	2	218700935	218700935	+	Splice_Site	SNP	C	G	G			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNXB	7148	broad.mit.edu	37	6	32064730	32064730	+	Silent	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TOP1	7150	broad.mit.edu	37	20	39706143	39706143	+	Intron	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TP53	7157	broad.mit.edu	37	17	7577046	7577046	+	Nonsense_Mutation	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPD52L3	89882	broad.mit.edu	37	9	6328535	6328535	+	5'UTR	SNP	C	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPH2	121278	broad.mit.edu	37	12	72355438	72355438	+	Intron	SNP	G	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPK1	27010	broad.mit.edu	37	7	144245644	144245644	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPTE	7179	broad.mit.edu	37	21	10933919	10933919	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRAF3IP1	26146	broad.mit.edu	37	2	239256183	239256183	+	Intron	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRAPPC3	27095	broad.mit.edu	37	1	36603508	36603508	+	Silent	SNP	G	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRAPPC9	83696	broad.mit.edu	37	8	141461087	141461087	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TREML1	340205	broad.mit.edu	37	6	41117386	41117386	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRHDE	29953	broad.mit.edu	37	12	72956872	72956872	+	Intron	SNP	A	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRHR	7201	broad.mit.edu	37	8	110099719	110099720	+	5'Flank	DNP	CG	GA	GA			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIM22	10346	broad.mit.edu	37	11	5729478	5729478	+	Silent	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIM25	7706	broad.mit.edu	37	17	54969240	54969240	+	Missense_Mutation	SNP	T	G	G			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIM37	4591	broad.mit.edu	37	17	57128705	57128705	+	Intron	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIM44	54765	broad.mit.edu	37	11	35685179	35685179	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIM45	80263	broad.mit.edu	37	1	117655223	117655223	+	Intron	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIML1	339976	broad.mit.edu	37	4	189060757	189060757	+	Silent	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIML1	339976	broad.mit.edu	37	4	189068316	189068316	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIP12	9320	broad.mit.edu	37	2	230657800	230657800	+	Nonsense_Mutation	SNP	G	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRMU	55687	broad.mit.edu	37	22	46747957	46747957	+	Intron	SNP	G	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPA1	8989	broad.mit.edu	37	8	72951251	72951251	+	Frame_Shift_Del	DEL	C	-	-			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPC1	7220	broad.mit.edu	37	3	142523341	142523341	+	Missense_Mutation	SNP	A	G	G			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPC3	7222	broad.mit.edu	37	4	122833087	122833087	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPC5	7224	broad.mit.edu	37	X	111155830	111155830	+	Silent	SNP	G	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPC7	57113	broad.mit.edu	37	5	135651233	135651233	+	Intron	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPM1	4308	broad.mit.edu	37	15	31355463	31355463	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPM4	54795	broad.mit.edu	37	19	49684691	49684691	+	Missense_Mutation	SNP	A	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPM6	140803	broad.mit.edu	37	9	77397635	77397635	+	Nonsense_Mutation	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPS1	7227	broad.mit.edu	37	8	116427108	116427108	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPS1	7227	broad.mit.edu	37	8	116599195	116599195	+	Intron	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPS1	7227	broad.mit.edu	37	8	116616676	116616676	+	Missense_Mutation	SNP	G	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPV6	55503	broad.mit.edu	37	7	142571007	142571007	+	Intron	DEL	T	-	-	rs4987673		TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TSC22D1	8848	broad.mit.edu	37	13	45148670	45148670	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TSEN54	283989	broad.mit.edu	37	17	73513546	73513546	+	Intron	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TSHZ2	128553	broad.mit.edu	37	20	51871053	51871053	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TSHZ2	128553	broad.mit.edu	37	20	51872417	51872417	+	Missense_Mutation	SNP	C	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TSHZ3	57616	broad.mit.edu	37	19	31769270	31769270	+	Nonsense_Mutation	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TSPAN16	26526	broad.mit.edu	37	19	11411906	11411906	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TSPAN33	340348	broad.mit.edu	37	7	128801488	128801488	+	Intron	SNP	C	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTC21B	79809	broad.mit.edu	37	2	166781001	166781001	+	Intron	SNP	C	A	A	rs112985400		TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTC5	91875	broad.mit.edu	37	14	20764550	20764550	+	Missense_Mutation	SNP	G	T	T	rs150011121		TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTLL2	83887	broad.mit.edu	37	6	167753613	167753613	+	Silent	SNP	G	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTLL5	23093	broad.mit.edu	37	14	76368394	76368394	+	Intron	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTLL9	164395	broad.mit.edu	37	20	30512840	30512840	+	Silent	SNP	G	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179455492	179455492	+	Silent	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179528470	179528470	+	Intron	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179577161	179577161	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179585355	179585355	+	Missense_Mutation	SNP	C	G	G			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179616755	179616755	+	Missense_Mutation	SNP	C	G	G			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTR	7276	broad.mit.edu	37	18	29175325	29175325	+	Intron	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TUBAL3	79861	broad.mit.edu	37	10	5436254	5436254	+	Silent	SNP	T	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TUBGCP6	85378	broad.mit.edu	37	22	50659383	50659383	+	Silent	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TXNDC3	51314	broad.mit.edu	37	7	37890007	37890007	+	Missense_Mutation	SNP	G	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TXNL4A	10907	broad.mit.edu	37	18	77737634	77737634	+	Missense_Mutation	SNP	T	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBE2T	29089	broad.mit.edu	37	1	202300918	202300918	+	3'UTR	DEL	C	-	-			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBE3C	9690	broad.mit.edu	37	7	156963050	156963050	+	Missense_Mutation	SNP	G	C	C			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UGT1A7	54577	broad.mit.edu	37	2	234591014	234591014	+	Missense_Mutation	SNP	C	G	G			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UGT3A2	167127	broad.mit.edu	37	5	36037999	36037999	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UMOD	7369	broad.mit.edu	37	16	20357478	20357478	+	Silent	SNP	G	T	T	rs143764582		TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UNC5B	219699	broad.mit.edu	37	10	73050606	73050606	+	Intron	SNP	G	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UNC5C	8633	broad.mit.edu	37	4	96106512	96106512	+	Intron	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UNC93A	54346	broad.mit.edu	37	6	167717803	167717803	+	Intron	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UPP1	7378	broad.mit.edu	37	7	48142961	48142961	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UQCRC1	7384	broad.mit.edu	37	3	48637934	48637934	+	Silent	SNP	G	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
URGCP	55665	broad.mit.edu	37	7	43958550	43958550	+	Intron	SNP	T	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UROC1	131669	broad.mit.edu	37	3	126220152	126220152	+	Intron	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USH2A	7399	broad.mit.edu	37	1	215847399	215847399	+	Intron	SNP	C	G	G			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USH2A	7399	broad.mit.edu	37	1	215847618	215847618	+	Silent	SNP	A	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USH2A	7399	broad.mit.edu	37	1	216420508	216420508	+	Missense_Mutation	SNP	C	G	G			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USHBP1	83878	broad.mit.edu	37	19	17366264	17366264	+	Missense_Mutation	SNP	C	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP31	57478	broad.mit.edu	37	16	23080339	23080339	+	Silent	SNP	G	C	C			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP31	57478	broad.mit.edu	37	16	23085137	23085137	+	Silent	SNP	C	G	G			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP34	9736	broad.mit.edu	37	2	61505300	61505300	+	Missense_Mutation	SNP	C	G	G			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP6NL	9712	broad.mit.edu	37	10	11504534	11504534	+	Missense_Mutation	SNP	C	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP7	7874	broad.mit.edu	37	16	9010305	9010305	+	Intron	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	42688075	42688075	+	IGR	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	65929978	65929978	+	IGR	SNP	T	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	67008356	67008356	+	IGR	SNP	C	G	G			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	6795475	6795475	+	IGR	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	8556034	8556034	+	IGR	SNP	A	G	G			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	89402547	89402547	+	IGR	SNP	T	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	107047886	107047886	+	IGR	SNP	T	G	G			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	113111527	113111527	+	IGR	SNP	T	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	25610102	25610102	+	IGR	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	33809097	33809097	+	IGR	SNP	A	G	G			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	4263633	4263633	+	IGR	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	55136443	55136443	+	IGR	SNP	C	A	A	rs150266400	by1000genomes	TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	55419400	55419400	+	IGR	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	56064964	56064964	+	IGR	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	56143285	56143285	+	IGR	SNP	T	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	59225406	59225406	+	IGR	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	62098540	62098540	+	IGR	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	85906392	85906392	+	IGR	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	106410685	106410685	+	IGR	SNP	T	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	25957039	25957039	+	IGR	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	33608224	33608224	+	IGR	SNP	A	C	C			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	53125206	53125206	+	IGR	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	83545272	83545272	+	IGR	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	19701080	19701080	+	IGR	SNP	A	G	G			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	19701133	19701133	+	IGR	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	19981956	19981956	+	IGR	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	35253145	35253145	+	IGR	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	47065169	47065169	+	IGR	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	57747880	57747880	+	IGR	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	57889130	57889130	+	IGR	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	98128435	98128435	+	IGR	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	19411701	19411701	+	IGR	SNP	A	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	19411735	19411735	+	IGR	SNP	C	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	20098057	20098057	+	IGR	SNP	C	G	G			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	35163534	35163534	+	IGR	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	44547047	44547047	+	IGR	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	58097023	58097023	+	IGR	SNP	T	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	82128773	82128773	+	IGR	SNP	A	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	94594038	94594038	+	IGR	SNP	G	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	99439260	99439260	+	IGR	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	102369196	102369196	+	IGR	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	20193015	20193015	+	IGR	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	22482931	22482931	+	IGR	SNP	T	G	G			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	22691504	22691504	+	IGR	SNP	T	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	31089832	31089832	+	IGR	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	88301243	88301243	+	IGR	SNP	G	C	C			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	32926601	32926601	+	IGR	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	33661257	33661257	+	IGR	SNP	G	T	T	rs139395723	by1000genomes	TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	61089721	61089721	+	IGR	SNP	T	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	78083321	78083321	+	IGR	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	14608869	14608869	+	IGR	SNP	C	G	G	rs113958634		TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	46768758	46768758	+	IGR	SNP	G	C	C			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	52030777	52030777	+	IGR	SNP	T	G	G	rs117559435	by1000genomes	TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	14146811	14146811	+	IGR	SNP	A	G	G			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	57445931	57445931	+	IGR	SNP	T	C	C			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	6462941	6462941	+	IGR	SNP	A	G	G			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	70285998	70285998	+	IGR	SNP	T	C	C			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	15774863	15774863	+	IGR	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	21821872	21821872	+	IGR	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	22647522	22647522	+	IGR	SNP	A	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	23015144	23015144	+	IGR	DEL	C	-	-			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	23031086	23031086	+	IGR	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	23688173	23688173	+	IGR	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	23688726	23688726	+	IGR	SNP	G	C	C			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	45434335	45434335	+	IGR	SNP	C	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	45434417	45434417	+	IGR	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	51430624	51430624	+	IGR	SNP	G	C	C			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	53263576	53263576	+	IGR	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	55119465	55119465	+	IGR	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	55209770	55209770	+	IGR	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	55209984	55209984	+	IGR	SNP	C	G	G			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	57689329	57689329	+	IGR	SNP	T	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	102252552	102252552	+	IGR	SNP	A	G	G			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	149060099	149060099	+	IGR	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	149092305	149092305	+	IGR	SNP	A	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	149101911	149101911	+	IGR	SNP	G	T	T	rs111661472		TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	149263194	149263195	+	IGR	DNP	TG	AT	AT			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	159176293	159176293	+	IGR	SNP	G	T	T	rs56098716		TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	167131915	167131915	+	IGR	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	187532786	187532786	+	IGR	SNP	C	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	187532844	187532844	+	IGR	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	192217162	192217162	+	IGR	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	200594086	200594086	+	IGR	SNP	C	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	73571003	73571003	+	IGR	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	10367071	10367071	+	IGR	SNP	C	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	11589309	11589309	+	IGR	SNP	G	C	C			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	29874487	29874487	+	IGR	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	6181729	6181729	+	IGR	SNP	A	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	10899961	10899961	+	IGR	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	15135920	15135920	+	IGR	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	19266675	19266675	+	IGR	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	32433142	32433142	+	IGR	SNP	T	C	C			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	22	17341451	17341451	+	IGR	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	102138008	102138008	+	IGR	SNP	A	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	104110942	104110942	+	IGR	SNP	C	G	G			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	130745743	130745743	+	IGR	SNP	T	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	17998376	17998376	+	IGR	SNP	C	G	G			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	183936711	183936711	+	IGR	SNP	G	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	194994674	194994674	+	IGR	SNP	C	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	234494729	234494729	+	IGR	SNP	A	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	26901172	26901172	+	IGR	SNP	A	G	G			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	44497826	44497826	+	IGR	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	49510302	49510303	+	IGR	DNP	GG	TT	TT			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	58478672	58478672	+	IGR	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	76105693	76105693	+	IGR	SNP	A	G	G			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	88664499	88664499	+	IGR	SNP	G	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	91940306	91940306	+	IGR	SNP	G	T	T	rs2456607	by1000genomes	TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	148703501	148703501	+	IGR	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	175695751	175695751	+	IGR	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	175695823	175695823	+	IGR	SNP	T	G	G			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	195345962	195345962	+	IGR	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	75264688	75264688	+	IGR	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	28825598	28825598	+	IGR	SNP	G	C	C			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	73793646	73793646	+	IGR	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	18049962	18049962	+	IGR	SNP	G	C	C			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	41586646	41586646	+	IGR	SNP	G	C	C			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	41586648	41586648	+	IGR	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	75206961	75206961	+	IGR	SNP	A	G	G			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	167622295	167622295	+	IGR	SNP	C	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	27705178	27705178	+	IGR	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	39926241	39926241	+	IGR	SNP	T	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	77372436	77372436	+	IGR	SNP	G	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	80778302	80778302	+	IGR	SNP	C	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	88986113	88986113	+	IGR	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	127837556	127837556	+	IGR	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	144703272	144703272	+	IGR	SNP	T	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	148888338	148888338	+	IGR	SNP	C	G	G			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	152142789	152142789	+	IGR	SNP	C	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	22550526	22550526	+	IGR	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	26285192	26285192	+	IGR	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	37625383	37625383	+	IGR	SNP	C	G	G			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	51667989	51667989	+	IGR	DEL	C	-	-			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	53930550	53930550	+	IGR	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	56356068	56356068	+	IGR	SNP	T	C	C			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	57832919	57832919	+	IGR	SNP	C	G	G			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	63032759	63032759	+	IGR	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	63354466	63354466	+	IGR	SNP	T	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	9654803	9654803	+	IGR	SNP	G	C	C			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	106208269	106208269	+	IGR	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	107228221	107228221	+	IGR	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	47503888	47503888	+	IGR	SNP	C	A	A	rs148663481	by1000genomes	TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	61851618	61851618	+	IGR	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	67896470	67896470	+	IGR	SNP	T	G	G			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	73142414	73142414	+	IGR	SNP	A	G	G			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	74128326	74128326	+	IGR	SNP	A	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	83204516	83204516	+	IGR	SNP	T	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	88800999	88800999	+	IGR	SNP	G	C	C			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	132142481	132142481	+	IGR	SNP	G	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	42275848	42275848	+	IGR	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	76090476	76090476	+	IGR	SNP	A	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	84673344	84673344	+	IGR	SNP	G	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	100852549	100852549	+	IGR	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	136743705	136743706	+	IGR	DNP	CC	AA	AA			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	146271143	146271143	+	IGR	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	26179297	26179297	+	IGR	SNP	C	G	G			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	37402213	37402213	+	IGR	SNP	G	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	48020388	48020388	+	IGR	SNP	G	C	C			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	64771077	64771077	+	IGR	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	78579882	78579882	+	IGR	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	79827977	79827977	+	IGR	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	85340245	85340245	+	IGR	SNP	T	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	87351531	87351531	+	IGR	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	92477740	92477740	+	IGR	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VCAN	1462	broad.mit.edu	37	5	82815784	82815784	+	Silent	SNP	A	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VEGFC	7424	broad.mit.edu	37	4	177608327	177608327	+	Intron	SNP	T	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VIT	5212	broad.mit.edu	37	2	36994405	36994405	+	Missense_Mutation	SNP	T	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VN1R5	317705	broad.mit.edu	37	1	247419455	247419455	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VNN3	55350	broad.mit.edu	37	6	133044236	133044236	+	Intron	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VPS13B	157680	broad.mit.edu	37	8	100148980	100148980	+	Missense_Mutation	SNP	G	C	C			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VPS13B	157680	broad.mit.edu	37	8	100832257	100832257	+	Silent	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VSIG1	340547	broad.mit.edu	37	X	107315961	107315961	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VSIG4	11326	broad.mit.edu	37	X	65253608	65253608	+	Silent	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VWC2	375567	broad.mit.edu	37	7	49842473	49842473	+	Intron	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR62	284403	broad.mit.edu	37	19	36549665	36549665	+	Intron	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR62	284403	broad.mit.edu	37	19	36558728	36558728	+	Splice_Site	SNP	A	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR62	284403	broad.mit.edu	37	19	36580044	36580044	+	Intron	SNP	G	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR64	128025	broad.mit.edu	37	1	241958616	241958616	+	Intron	SNP	G	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR90	197335	broad.mit.edu	37	16	709129	709129	+	Intron	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WLS	79971	broad.mit.edu	37	1	68619175	68619175	+	Intron	SNP	A	C	C			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WNT9B	7484	broad.mit.edu	37	17	44953934	44953934	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WSCD2	9671	broad.mit.edu	37	12	108603991	108603991	+	Missense_Mutation	SNP	G	C	C			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XCL2	6846	broad.mit.edu	37	1	168510202	168510202	+	Silent	SNP	G	A	A	rs149372418	byFrequency	TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XIRP2	129446	broad.mit.edu	37	2	168102148	168102148	+	Missense_Mutation	SNP	G	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XIRP2	129446	broad.mit.edu	37	2	168103039	168103039	+	Missense_Mutation	SNP	G	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XPNPEP2	7512	broad.mit.edu	37	X	128886336	128886336	+	Intron	SNP	C	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XRCC5	7520	broad.mit.edu	37	2	217040384	217040384	+	Intron	SNP	G	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XYLT1	64131	broad.mit.edu	37	16	17202756	17202756	+	Silent	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
YAP1	10413	broad.mit.edu	37	11	102033253	102033253	+	Silent	SNP	A	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZACN	353174	broad.mit.edu	37	17	74077485	74077485	+	Splice_Site	SNP	T	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZAN	7455	broad.mit.edu	37	7	100352909	100352909	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZAN	7455	broad.mit.edu	37	7	100383577	100383577	+	Intron	SNP	A	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZBED1	9189	broad.mit.edu	37	X	2407023	2407023	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZBTB22	9278	broad.mit.edu	37	6	33283189	33283189	+	Missense_Mutation	SNP	C	G	G			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZC3H13	23091	broad.mit.edu	37	13	46542960	46542960	+	Missense_Mutation	SNP	C	G	G			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZDBF2	57683	broad.mit.edu	37	2	207169696	207169696	+	Silent	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZDBF2	57683	broad.mit.edu	37	2	207171384	207171384	+	Missense_Mutation	SNP	C	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZEB1	6935	broad.mit.edu	37	10	31809741	31809741	+	Missense_Mutation	SNP	A	G	G			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZFHX4	79776	broad.mit.edu	37	8	77764403	77764403	+	Missense_Mutation	SNP	G	C	C			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZFHX4	79776	broad.mit.edu	37	8	77766690	77766690	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZFHX4	79776	broad.mit.edu	37	8	77766734	77766734	+	Missense_Mutation	SNP	C	G	G			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZFHX4	79776	broad.mit.edu	37	8	77767190	77767190	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZFP90	146198	broad.mit.edu	37	16	68598507	68598507	+	Missense_Mutation	SNP	A	G	G			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZIC1	7545	broad.mit.edu	37	3	147128031	147128031	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZIC3	7547	broad.mit.edu	37	X	136651239	136651239	+	Intron	SNP	A	G	G			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZMAT1	84460	broad.mit.edu	37	X	101138771	101138771	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZMIZ2	83637	broad.mit.edu	37	7	44801092	44801092	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZMYND8	23613	broad.mit.edu	37	20	45858633	45858633	+	Intron	SNP	T	C	C			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF155	7711	broad.mit.edu	37	19	44495949	44495949	+	Intron	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF169	169841	broad.mit.edu	37	9	97062215	97062215	+	Silent	SNP	A	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF184	7738	broad.mit.edu	37	6	27419414	27419415	+	Frame_Shift_Ins	INS	-	G	G			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF189	7743	broad.mit.edu	37	9	104170866	104170866	+	Silent	SNP	A	G	G			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF208	7757	broad.mit.edu	37	19	22155210	22155210	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF208	7757	broad.mit.edu	37	19	22157345	22157345	+	Missense_Mutation	SNP	T	C	C			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF217	7764	broad.mit.edu	37	20	52198754	52198754	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF225	7768	broad.mit.edu	37	19	44636290	44636290	+	Missense_Mutation	SNP	G	C	C			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF227	7770	broad.mit.edu	37	19	44739160	44739160	+	Missense_Mutation	SNP	A	C	C			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF286B	729288	broad.mit.edu	37	17	18580564	18580564	+	Intron	SNP	T	G	G			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF320	162967	broad.mit.edu	37	19	53383932	53383932	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF334	55713	broad.mit.edu	37	20	45130108	45130108	+	Nonsense_Mutation	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF335	63925	broad.mit.edu	37	20	44590956	44590956	+	Intron	SNP	C	G	G			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF343	79175	broad.mit.edu	37	20	2464827	2464827	+	Silent	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF346	23567	broad.mit.edu	37	5	176489059	176489059	+	Missense_Mutation	SNP	C	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF354C	30832	broad.mit.edu	37	5	178505705	178505705	+	Missense_Mutation	SNP	C	G	G			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF365	22891	broad.mit.edu	37	10	64159206	64159206	+	Intron	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF407	55628	broad.mit.edu	37	18	72345910	72345911	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF425	155054	broad.mit.edu	37	7	148802424	148802424	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF425	155054	broad.mit.edu	37	7	148802491	148802491	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF440	126070	broad.mit.edu	37	19	11943196	11943196	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF474	133923	broad.mit.edu	37	5	121487812	121487812	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF479	90827	broad.mit.edu	37	7	57193628	57193628	+	Intron	SNP	C	G	G			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF492	57615	broad.mit.edu	37	19	22847741	22847741	+	Missense_Mutation	SNP	G	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF493	284443	broad.mit.edu	37	19	21607572	21607572	+	Missense_Mutation	SNP	A	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF521	25925	broad.mit.edu	37	18	22669505	22669505	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF536	9745	broad.mit.edu	37	19	30935931	30935931	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF543	125919	broad.mit.edu	37	19	57839241	57839241	+	Silent	SNP	A	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF543	125919	broad.mit.edu	37	19	57839243	57839243	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF568	374900	broad.mit.edu	37	19	37441368	37441368	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF569	148266	broad.mit.edu	37	19	37904988	37904988	+	Missense_Mutation	SNP	C	G	G			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF578	147660	broad.mit.edu	37	19	53015127	53015127	+	Missense_Mutation	SNP	T	C	C			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF582	147948	broad.mit.edu	37	19	56903218	56903218	+	Intron	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF585A	199704	broad.mit.edu	37	19	37643910	37643910	+	Silent	SNP	T	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF595	152687	broad.mit.edu	37	4	85778	85778	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF611	81856	broad.mit.edu	37	19	53208789	53208789	+	Missense_Mutation	SNP	C	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF616	90317	broad.mit.edu	37	19	52618394	52618394	+	Missense_Mutation	SNP	T	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF622	90441	broad.mit.edu	37	5	16458721	16458721	+	Missense_Mutation	SNP	T	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF622	90441	broad.mit.edu	37	5	16465143	16465143	+	Intron	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF670	93474	broad.mit.edu	37	1	247207046	247207046	+	Intron	SNP	C	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF676	163223	broad.mit.edu	37	19	22379270	22379270	+	Intron	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF677	342926	broad.mit.edu	37	19	53741861	53741861	+	Intron	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF702P	79986	broad.mit.edu	37	19	53473326	53473326	+	RNA	SNP	T	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF778	197320	broad.mit.edu	37	16	89294046	89294046	+	Silent	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF781	163115	broad.mit.edu	37	19	38159928	38159928	+	3'UTR	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF804A	91752	broad.mit.edu	37	2	185801377	185801377	+	Nonsense_Mutation	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF804A	91752	broad.mit.edu	37	2	185801697	185801697	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF804A	91752	broad.mit.edu	37	2	185802923	185802923	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF804B	219578	broad.mit.edu	37	7	88956638	88956638	+	Intron	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF804B	219578	broad.mit.edu	37	7	88965207	88965207	+	Missense_Mutation	SNP	G	C	C	rs141578416		TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF808	388558	broad.mit.edu	37	19	53059092	53059092	+	3'UTR	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF831	128611	broad.mit.edu	37	20	57766799	57766799	+	Missense_Mutation	SNP	C	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF831	128611	broad.mit.edu	37	20	57768672	57768672	+	Frame_Shift_Del	DEL	A	-	-			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF846	162993	broad.mit.edu	37	19	9868262	9868262	+	Silent	SNP	T	C	C			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF85	7639	broad.mit.edu	37	19	21106280	21106280	+	Intron	SNP	G	C	C			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF85	7639	broad.mit.edu	37	19	21131981	21131981	+	Nonsense_Mutation	SNP	A	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF8	7554	broad.mit.edu	37	19	58806148	58806148	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF93	81931	broad.mit.edu	37	19	20027413	20027413	+	Nonsense_Mutation	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF99	7652	broad.mit.edu	37	19	22939803	22939804	+	Frame_Shift_Del	DEL	GA	-	-			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZP4	57829	broad.mit.edu	37	1	238050766	238050766	+	Frame_Shift_Del	DEL	G	-	-			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZSCAN1	284312	broad.mit.edu	37	19	58563742	58563742	+	Intron	SNP	C	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZSWIM2	151112	broad.mit.edu	37	2	187692819	187692819	+	Missense_Mutation	SNP	C	A	A	rs147192687		TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZSWIM2	151112	broad.mit.edu	37	2	187694603	187694603	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZSWIM2	151112	broad.mit.edu	37	2	187694632	187694632	+	Intron	SNP	G	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZXDC	79364	broad.mit.edu	37	3	126184955	126184955	+	Intron	SNP	C	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZZEF1	23140	broad.mit.edu	37	17	3954138	3954138	+	Missense_Mutation	SNP	T	G	G			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	134623993	134623993	+	Missense_Mutation	SNP	T	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	52389711	52389711	+	RNA	SNP	G	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	22219210	22219210	+	Intron	SNP	C	G	G			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	22600936	22600936	+	Intron	SNP	G	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	23002384	23002384	+	Intron	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	102316161	102316161	+	5'Flank	SNP	C	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	20688432	20688432	+	5'Flank	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	20805290	20805290	+	Intron	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	21731573	21731573	+	3'UTR	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	25751441	25751441	+	Intron	SNP	A	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	54182110	54182110	+	5'Flank	SNP	C	G	G			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	121116605	121116605	+	Intron	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	142729840	142729840	+	Intron	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	148882459	148882459	+	Intron	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	159410518	159410519	+	Intron	DNP	AG	TA	TA			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	22	42504639	42504639	+	Intron	SNP	C	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	131453209	131453209	+	Intron	SNP	G	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	186689186	186689186	+	RNA	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	190788268	190788268	+	Silent	SNP	A	G	G			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	89160888	89160888	+	Intron	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	89185312	89185312	+	Intron	SNP	C	A	A	rs116030446	by1000genomes	TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	89266241	89266241	+	RNA	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	89553490	89553490	+	Intron	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	89967210	89967210	+	Intron	SNP	T	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	90193053	90193053	+	Intron	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	90212233	90212233	+	RNA	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	9241830	9241830	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	100551873	100551873	+	RNA	SNP	A	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	142045769	142045769	+	Intron	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	142111523	142111523	+	Intron	SNP	T	C	C			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	15055189	15055189	+	Intron	SNP	T	C	C			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	80185567	80185567	+	Frame_Shift_Del	DEL	G	-	-			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
psiTPTE22	387590	broad.mit.edu	37	22	17140413	17140413	+	Intron	SNP	C	G	G			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
