Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer
ABCA13	154664	broad.mit.edu	37	7	48312879	48312879	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCA13	154664	broad.mit.edu	37	7	48337984	48337984	+	Missense_Mutation	SNP	T	C	C	rs117649711	by1000genomes	TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCB10	23456	broad.mit.edu	37	1	229665906	229665906	+	Intron	SNP	G	T	T			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCC12	94160	broad.mit.edu	37	16	48117616	48117616	+	3'UTR	SNP	G	T	T			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCC1	4363	broad.mit.edu	37	16	16161981	16161981	+	Intron	SNP	A	G	G			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCC3	8714	broad.mit.edu	37	17	48744863	48744863	+	Intron	SNP	G	A	A			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCC9	10060	broad.mit.edu	37	12	22068533	22068533	+	Intron	SNP	G	T	T			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCD1	215	broad.mit.edu	37	X	152991456	152991456	+	Silent	SNP	C	T	T			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCF3	55324	broad.mit.edu	37	3	183907286	183907286	+	Intron	SNP	T	C	C			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACACA	31	broad.mit.edu	37	17	35508206	35508206	+	Intron	SNP	C	A	A			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACLY	47	broad.mit.edu	37	17	40025125	40025125	+	Intron	SNP	G	A	A			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACOT4	122970	broad.mit.edu	37	14	74061971	74061971	+	Silent	SNP	G	C	C			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACSM2A	123876	broad.mit.edu	37	16	20487291	20487291	+	Intron	SNP	G	T	T			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACSM2B	348158	broad.mit.edu	37	16	20548794	20548794	+	Intron	SNP	G	T	T			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACSM5	54988	broad.mit.edu	37	16	20451223	20451223	+	Silent	SNP	A	G	G	rs112747866		TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM12	8038	broad.mit.edu	37	10	127755307	127755307	+	Silent	SNP	C	A	A			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM18	8749	broad.mit.edu	37	8	39564276	39564276	+	Intron	SNP	G	T	T			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM18	8749	broad.mit.edu	37	8	39587426	39587426	+	Silent	SNP	C	A	A			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM22	53616	broad.mit.edu	37	7	87563913	87563913	+	Intron	SNP	A	G	G			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM23	8745	broad.mit.edu	37	2	207482345	207482345	+	Silent	SNP	C	A	A			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM6	8755	broad.mit.edu	37	14	106478163	106478164	+	RNA	DNP	GG	TT	TT			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM6	8755	broad.mit.edu	37	14	106919490	106919490	+	Intron	SNP	C	G	G			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM6	8755	broad.mit.edu	37	14	107087758	107087758	+	Intron	SNP	G	C	C			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM6	8755	broad.mit.edu	37	14	107198828	107198828	+	Intron	SNP	G	T	T			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS12	81792	broad.mit.edu	37	5	33615820	33615820	+	Intron	SNP	T	A	A			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS16	170690	broad.mit.edu	37	5	5191938	5191938	+	Intron	SNP	G	A	A			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS2	9509	broad.mit.edu	37	5	178585638	178585638	+	Intron	SNP	T	C	C			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTSL3	57188	broad.mit.edu	37	15	84558708	84558708	+	Intron	SNP	A	G	G			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADCY2	108	broad.mit.edu	37	5	7724812	7724812	+	Intron	SNP	T	C	C			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADH1A	124	broad.mit.edu	37	4	100207958	100207958	+	Intron	SNP	A	T	T			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADM	133	broad.mit.edu	37	11	10327535	10327536	+	Silent	DNP	GC	TA	TA			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AFF2	2334	broad.mit.edu	37	X	148048193	148048193	+	Intron	SNP	G	T	T			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AFMID	125061	broad.mit.edu	37	17	76201121	76201121	+	Intron	SNP	A	T	T			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AHI1	54806	broad.mit.edu	37	6	135611746	135611746	+	Intron	SNP	G	A	A			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AHSG	197	broad.mit.edu	37	3	186338396	186338396	+	Missense_Mutation	SNP	C	G	G			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AICDA	57379	broad.mit.edu	37	12	8757733	8757733	+	Intron	SNP	C	T	T			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AKAP3	10566	broad.mit.edu	37	12	4737626	4737626	+	Missense_Mutation	SNP	C	T	T			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AKAP4	8852	broad.mit.edu	37	X	49962337	49962337	+	Intron	SNP	A	T	T			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALDH5A1	7915	broad.mit.edu	37	6	24533937	24533937	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALLC	55821	broad.mit.edu	37	2	3726203	3726203	+	Intron	SNP	G	T	T			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANK2	287	broad.mit.edu	37	4	114153505	114153505	+	Intron	SNP	C	G	G			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANK2	287	broad.mit.edu	37	4	114280096	114280096	+	Missense_Mutation	SNP	G	A	A			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKRD26	22852	broad.mit.edu	37	10	27388876	27388876	+	Intron	SNP	C	A	A			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANO4	121601	broad.mit.edu	37	12	101437438	101437438	+	Intron	SNP	G	A	A			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANO4	121601	broad.mit.edu	37	12	101490494	101490494	+	Intron	SNP	G	T	T			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANTXR1	84168	broad.mit.edu	37	2	69272011	69272011	+	Intron	SNP	G	T	T			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
APBB1IP	54518	broad.mit.edu	37	10	26789819	26789819	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARFGAP3	26286	broad.mit.edu	37	22	43218186	43218186	+	Intron	SNP	A	C	C			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGEF11	9826	broad.mit.edu	37	1	156909773	156909773	+	Intron	SNP	C	T	T			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARID2	196528	broad.mit.edu	37	12	46230616	46230616	+	Missense_Mutation	SNP	A	G	G			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARMC3	219681	broad.mit.edu	37	10	23290868	23290868	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARRDC4	91947	broad.mit.edu	37	15	98513761	98513761	+	Intron	SNP	A	T	T			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARRDC5	645432	broad.mit.edu	37	19	4896732	4896732	+	Missense_Mutation	SNP	T	C	C			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARX	170302	broad.mit.edu	37	X	25023071	25023071	+	Intron	SNP	G	T	T			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASH1L	55870	broad.mit.edu	37	1	155451984	155451984	+	Missense_Mutation	SNP	G	A	A			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASPM	259266	broad.mit.edu	37	1	197055911	197055911	+	Intron	SNP	T	A	A			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASTL	431705	broad.mit.edu	37	2	96789882	96789882	+	Missense_Mutation	SNP	C	A	A	rs138508296	by1000genomes	TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATG4D	84971	broad.mit.edu	37	19	10655478	10655478	+	Silent	SNP	G	T	T			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP10D	57205	broad.mit.edu	37	4	47565847	47565847	+	Intron	SNP	G	T	T			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP11C	286410	broad.mit.edu	37	X	138880430	138880430	+	Splice_Site	SNP	A	G	G			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP13A1	57130	broad.mit.edu	37	19	19766306	19766306	+	Intron	SNP	C	T	T			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP1A3	478	broad.mit.edu	37	19	42474762	42474762	+	Intron	SNP	G	T	T			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP2A1	487	broad.mit.edu	37	16	28915423	28915423	+	Intron	SNP	C	A	A			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP2B3	492	broad.mit.edu	37	X	152825273	152825273	+	Silent	SNP	C	A	A			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP2C1	27032	broad.mit.edu	37	3	130735084	130735084	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP8B4	79895	broad.mit.edu	37	15	50154564	50154564	+	Silent	SNP	G	T	T			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP8B4	79895	broad.mit.edu	37	15	50158550	50158550	+	Silent	SNP	T	A	A			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATRNL1	26033	broad.mit.edu	37	10	117059779	117059779	+	Intron	SNP	C	T	T			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
B3GNT8	374907	broad.mit.edu	37	19	41932338	41932338	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BAGE2	85319	broad.mit.edu	37	21	11049614	11049614	+	Missense_Mutation	SNP	T	A	A			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BAI3	577	broad.mit.edu	37	6	70092758	70092758	+	Silent	SNP	A	G	G			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BAT2L1	84726	broad.mit.edu	37	9	134351524	134351524	+	Silent	SNP	A	G	G			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BBS9	27241	broad.mit.edu	37	7	33644462	33644462	+	Intron	SNP	G	T	T			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BCHE	590	broad.mit.edu	37	3	165491179	165491180	+	Frame_Shift_Del	DEL	CA	-	-			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BCL9	607	broad.mit.edu	37	1	147092256	147092256	+	Silent	SNP	G	C	C			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BCORL1	63035	broad.mit.edu	37	X	129148566	129148566	+	Missense_Mutation	SNP	G	C	C			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BEND2	139105	broad.mit.edu	37	X	18221854	18221854	+	Missense_Mutation	SNP	C	G	G			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BIRC6	57448	broad.mit.edu	37	2	32822858	32822858	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BRD4	23476	broad.mit.edu	37	19	15367954	15367954	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BTN1A1	696	broad.mit.edu	37	6	26509112	26509112	+	Nonsense_Mutation	SNP	G	T	T			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BVES	11149	broad.mit.edu	37	6	105549026	105549026	+	Missense_Mutation	SNP	C	G	G			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C10orf84	63877	broad.mit.edu	37	10	120070333	120070333	+	3'UTR	SNP	T	A	A			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C13orf33	84935	broad.mit.edu	37	13	31495960	31495960	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C15orf27	123591	broad.mit.edu	37	15	76496245	76496245	+	Silent	SNP	C	T	T			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C15orf2	23742	broad.mit.edu	37	15	24921226	24921226	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf114	57821	broad.mit.edu	37	1	169391574	169391574	+	Intron	SNP	T	C	C			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf125	126859	broad.mit.edu	37	1	179437862	179437862	+	Intron	SNP	A	T	T			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf172	126695	broad.mit.edu	37	1	27278144	27278144	+	Missense_Mutation	SNP	A	G	G			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf97	84791	broad.mit.edu	37	1	211591162	211591162	+	Intron	SNP	A	T	T			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C21orf99	149992	broad.mit.edu	37	21	14414800	14414800	+	Intron	SNP	T	A	A			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C21orf99	149992	broad.mit.edu	37	21	14418637	14418637	+	Intron	SNP	C	T	T			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C6	729	broad.mit.edu	37	5	41142976	41142976	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C6orf103	79747	broad.mit.edu	37	6	147123833	147123833	+	Intron	SNP	C	G	G			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C6orf81	221481	broad.mit.edu	37	6	35715159	35715160	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C7orf60	154743	broad.mit.edu	37	7	112462041	112462041	+	Missense_Mutation	SNP	T	C	C			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C7orf69	80099	broad.mit.edu	37	7	47859104	47859104	+	Splice_Site	SNP	G	A	A			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CABP4	57010	broad.mit.edu	37	11	67222849	67222849	+	5'UTR	SNP	G	A	A			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1F	778	broad.mit.edu	37	X	49066292	49066292	+	Intron	SNP	C	A	A			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNB4	785	broad.mit.edu	37	2	152711655	152711655	+	Intron	SNP	T	C	C			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CADM2	253559	broad.mit.edu	37	3	86063643	86063643	+	Intron	SNP	C	T	T			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CALCR	799	broad.mit.edu	37	7	93116329	93116329	+	Intron	SNP	T	C	C			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CALN1	83698	broad.mit.edu	37	7	71252877	71252877	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CAMTA1	23261	broad.mit.edu	37	1	7725216	7725216	+	Missense_Mutation	SNP	T	A	A			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CAP1	10487	broad.mit.edu	37	1	40535803	40535803	+	Intron	SNP	T	C	C			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CASP10	843	broad.mit.edu	37	2	202052610	202052611	+	Intron	INS	-	T	T			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CATSPER3	347732	broad.mit.edu	37	5	134346177	134346177	+	Missense_Mutation	SNP	A	T	T			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CATSPER4	378807	broad.mit.edu	37	1	26527428	26527428	+	Silent	SNP	C	T	T			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CBX4	8535	broad.mit.edu	37	17	77808278	77808278	+	Missense_Mutation	SNP	G	C	C			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCBE1	147372	broad.mit.edu	37	18	57106566	57106566	+	Intron	SNP	G	A	A			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC120	90060	broad.mit.edu	37	X	48919767	48919767	+	5'UTR	SNP	C	A	A			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC123	84902	broad.mit.edu	37	19	33439179	33439179	+	Silent	SNP	T	C	C			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC14	64770	broad.mit.edu	37	3	123663717	123663717	+	Missense_Mutation	SNP	C	G	G			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC39	339829	broad.mit.edu	37	3	180377426	180377426	+	Intron	SNP	C	A	A			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC39	339829	broad.mit.edu	37	3	180381558	180381558	+	Intron	SNP	G	C	C			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC46	201134	broad.mit.edu	37	17	63685394	63685394	+	Intron	SNP	C	A	A			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC46	201134	broad.mit.edu	37	17	64125969	64125969	+	Intron	SNP	G	T	T			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD109	135228	broad.mit.edu	37	6	74528210	74528210	+	Silent	SNP	G	T	T			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD1A	909	broad.mit.edu	37	1	158227309	158227309	+	Intron	SNP	C	G	G			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD1C	911	broad.mit.edu	37	1	158263216	158263216	+	Intron	SNP	G	C	C			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD300LD	100131439	broad.mit.edu	37	17	72584765	72584765	+	Silent	SNP	G	A	A			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD47	961	broad.mit.edu	37	3	107766175	107766175	+	Intron	SNP	C	T	T			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD48	962	broad.mit.edu	37	1	160651121	160651121	+	Nonsense_Mutation	SNP	C	A	A			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDC42BPA	8476	broad.mit.edu	37	1	227259820	227259820	+	Intron	SNP	C	A	A			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDCA2	157313	broad.mit.edu	37	8	25319822	25319822	+	Intron	SNP	G	T	T			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH18	1016	broad.mit.edu	37	5	19473883	19473883	+	Intron	SNP	G	T	T			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH18	1016	broad.mit.edu	37	5	19747077	19747077	+	Missense_Mutation	SNP	A	G	G			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH2	1000	broad.mit.edu	37	18	25572823	25572823	+	Intron	SNP	T	A	A			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH8	1006	broad.mit.edu	37	16	61689397	61689397	+	Nonsense_Mutation	SNP	A	T	T			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH9	1007	broad.mit.edu	37	5	26916033	26916033	+	Splice_Site	SNP	C	A	A			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDHR1	92211	broad.mit.edu	37	10	85972245	85972245	+	Intron	SNP	G	T	T			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDK15	65061	broad.mit.edu	37	2	202698742	202698742	+	Intron	SNP	T	C	C			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CENPT	80152	broad.mit.edu	37	16	67864378	67864378	+	Silent	SNP	G	A	A			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CEP152	22995	broad.mit.edu	37	15	49030413	49030413	+	3'UTR	SNP	T	C	C			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CEP164	22897	broad.mit.edu	37	11	117262840	117262840	+	Intron	SNP	C	A	A			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CEP192	55125	broad.mit.edu	37	18	13059303	13059303	+	Missense_Mutation	SNP	G	A	A			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CES1	1066	broad.mit.edu	37	16	55867045	55867045	+	5'UTR	SNP	C	A	A			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CES7	221223	broad.mit.edu	37	16	55909017	55909017	+	Intron	SNP	C	T	T			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHM	1121	broad.mit.edu	37	X	85213879	85213879	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHP2	63928	broad.mit.edu	37	16	23768667	23768667	+	Intron	SNP	G	A	A			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHRDL1	91851	broad.mit.edu	37	X	109924711	109924711	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHST10	9486	broad.mit.edu	37	2	101014379	101014379	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLCA4	22802	broad.mit.edu	37	1	87040257	87040257	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLEC18C	283971	broad.mit.edu	37	16	70013160	70013160	+	Intron	SNP	G	A	A			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLPB	81570	broad.mit.edu	37	11	72145612	72145612	+	5'Flank	SNP	G	T	T			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CMAS	55907	broad.mit.edu	37	12	22213924	22213924	+	Intron	SNP	G	T	T			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNBD1	168975	broad.mit.edu	37	8	88296927	88296927	+	Frame_Shift_Del	DEL	G	-	-			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNKSR2	22866	broad.mit.edu	37	X	21613222	21613222	+	Intron	SNP	T	A	A			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTN2	6900	broad.mit.edu	37	1	205035456	205035456	+	Intron	SNP	T	A	A			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTN5	53942	broad.mit.edu	37	11	100061936	100061936	+	Silent	SNP	G	A	A			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL11A1	1301	broad.mit.edu	37	1	103345531	103345531	+	Intron	SNP	G	C	C			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL11A1	1301	broad.mit.edu	37	1	103548481	103548481	+	Missense_Mutation	SNP	C	G	G			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL11A2	1302	broad.mit.edu	37	6	33136570	33136570	+	Intron	SNP	C	A	A			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL14A1	7373	broad.mit.edu	37	8	121262859	121262859	+	Missense_Mutation	SNP	C	G	G			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL15A1	1306	broad.mit.edu	37	9	101809893	101809893	+	Intron	SNP	G	C	C			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL19A1	1310	broad.mit.edu	37	6	70916968	70916968	+	Missense_Mutation	SNP	G	A	A			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL1A2	1278	broad.mit.edu	37	7	94058669	94058669	+	Missense_Mutation	SNP	G	C	C			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL20A1	57642	broad.mit.edu	37	20	61939447	61939447	+	Intron	SNP	G	T	T			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL21A1	81578	broad.mit.edu	37	6	55924964	55924964	+	Nonsense_Mutation	SNP	G	T	T			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL22A1	169044	broad.mit.edu	37	8	139609068	139609068	+	Intron	SNP	C	T	T			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL22A1	169044	broad.mit.edu	37	8	139712300	139712300	+	Intron	SNP	C	T	T			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL27A1	85301	broad.mit.edu	37	9	117015255	117015255	+	Intron	SNP	G	T	T			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL29A1	256076	broad.mit.edu	37	3	130095082	130095082	+	Frame_Shift_Del	DEL	C	-	-			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL4A5	1287	broad.mit.edu	37	X	107923988	107923988	+	Intron	SNP	G	T	T			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL6A3	1293	broad.mit.edu	37	2	238271887	238271887	+	Intron	SNP	A	G	G			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL9A1	1297	broad.mit.edu	37	6	71004158	71004158	+	Silent	SNP	G	C	C			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL9A3	1299	broad.mit.edu	37	20	61467557	61467557	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COX8A	1351	broad.mit.edu	37	11	63743756	63743764	+	In_Frame_Del	DEL	CCTGTCACA	-	-	rs11550240		TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPSF3L	54973	broad.mit.edu	37	1	1249403	1249403	+	Intron	SNP	G	A	A			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPSF6	11052	broad.mit.edu	37	12	69646789	69646789	+	Intron	SNP	G	T	T			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CRB1	23418	broad.mit.edu	37	1	197403914	197403914	+	Missense_Mutation	SNP	C	G	G			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CRMP1	1400	broad.mit.edu	37	4	5837732	5837732	+	Silent	SNP	C	T	T			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CRNKL1	51340	broad.mit.edu	37	20	20018200	20018200	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CROCCL1	84809	broad.mit.edu	37	1	16946355	16946355	+	RNA	SNP	C	G	G			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CROCC	9696	broad.mit.edu	37	1	17183687	17183687	+	Intron	SNP	G	T	T			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CRYBG3	131544	broad.mit.edu	37	3	97605504	97605504	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD1	64478	broad.mit.edu	37	8	2944645	2944645	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD2	114784	broad.mit.edu	37	1	34276420	34276420	+	Missense_Mutation	SNP	G	C	C			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSRNP3	80034	broad.mit.edu	37	2	166535183	166535183	+	Intron	SNP	G	T	T			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTBP2	1488	broad.mit.edu	37	10	126715738	126715738	+	Intron	SNP	C	T	T			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CXCL6	6372	broad.mit.edu	37	4	74702948	74702948	+	Missense_Mutation	SNP	T	G	G			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CXXC5	51523	broad.mit.edu	37	5	139060145	139060146	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CXorf38	159013	broad.mit.edu	37	X	40496313	40496313	+	Silent	SNP	C	G	G			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CXorf41	139212	broad.mit.edu	37	X	106459799	106459799	+	Intron	SNP	A	G	G			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CXorf48	54967	broad.mit.edu	37	X	134304901	134304901	+	Intron	SNP	G	A	A			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CXorf58	254158	broad.mit.edu	37	X	23930093	23930093	+	Intron	SNP	G	T	T			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYFIP1	23191	broad.mit.edu	37	15	22929910	22929910	+	Intron	SNP	C	T	T			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP3A43	64816	broad.mit.edu	37	7	99445825	99445825	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYTH1	9267	broad.mit.edu	37	17	76688499	76688499	+	Silent	SNP	C	A	A			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DAB1	1600	broad.mit.edu	37	1	57480495	57480495	+	Intron	SNP	C	A	A			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DBF4	10926	broad.mit.edu	37	7	87525865	87525865	+	Intron	SNP	T	G	G			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCAF12L2	340578	broad.mit.edu	37	X	125299865	125299865	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DDAH1	23576	broad.mit.edu	37	1	85786976	85786976	+	3'UTR	SNP	G	C	C			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DDX12	440081	broad.mit.edu	37	12	9573029	9573029	+	Intron	SNP	T	C	C			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DDX12	440081	broad.mit.edu	37	12	9574158	9574158	+	Intron	SNP	T	C	C			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DDX1	1653	broad.mit.edu	37	2	15735456	15735456	+	Intron	SNP	G	T	T			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DDX52	11056	broad.mit.edu	37	17	35981583	35981583	+	Intron	SNP	T	C	C			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DDX60	55601	broad.mit.edu	37	4	169188881	169188881	+	Intron	SNP	T	C	C			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DGKB	1607	broad.mit.edu	37	7	14216483	14216484	+	Frame_Shift_Ins	INS	-	A	A			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DGKG	1608	broad.mit.edu	37	3	186015996	186015996	+	Missense_Mutation	SNP	T	A	A			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DHDH	27294	broad.mit.edu	37	19	49439303	49439303	+	Missense_Mutation	SNP	G	A	A			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DIP2A	23181	broad.mit.edu	37	21	47970495	47970495	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DKC1	1736	broad.mit.edu	37	X	154004926	154004926	+	Intron	SNP	G	T	T			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DMBT1	1755	broad.mit.edu	37	10	124358481	124358481	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DMD	1756	broad.mit.edu	37	X	31196969	31196969	+	Intron	SNP	C	A	A			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH3	55567	broad.mit.edu	37	16	21031296	21031296	+	Intron	SNP	G	T	T			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH5	1767	broad.mit.edu	37	5	13769806	13769806	+	Intron	SNP	G	A	A			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH8	1769	broad.mit.edu	37	6	38743667	38743667	+	Frame_Shift_Del	DEL	A	-	-			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH8	1769	broad.mit.edu	37	6	38939605	38939605	+	Intron	SNP	A	T	T			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNLZ	728489	broad.mit.edu	37	9	139257632	139257632	+	Intron	SNP	C	A	A			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNMT3A	1788	broad.mit.edu	37	2	25470989	25470989	+	Missense_Mutation	SNP	C	T	T			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DOCK7	85440	broad.mit.edu	37	1	63005186	63005186	+	Intron	SNP	G	A	A			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DOCK8	81704	broad.mit.edu	37	9	441464	441464	+	Intron	SNP	G	T	T			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DSC2	1824	broad.mit.edu	37	18	28667798	28667798	+	Intron	SNP	G	A	A			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DST	667	broad.mit.edu	37	6	56469819	56469819	+	Intron	SNP	C	T	T			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DST	667	broad.mit.edu	37	6	56472232	56472232	+	Intron	SNP	T	C	C			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DUS1L	64118	broad.mit.edu	37	17	80019862	80019862	+	Intron	SNP	A	G	G			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EEA1	8411	broad.mit.edu	37	12	93246590	93246590	+	Intron	SNP	C	A	A			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EFCAB6	64800	broad.mit.edu	37	22	44198616	44198616	+	Intron	SNP	G	A	A			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EMB	133418	broad.mit.edu	37	5	49699008	49699008	+	Intron	SNP	C	T	T			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ENGASE	64772	broad.mit.edu	37	17	77078118	77078118	+	Silent	SNP	G	T	T			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPHA5	2044	broad.mit.edu	37	4	66439761	66439761	+	Intron	SNP	C	T	T			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPHB3	2049	broad.mit.edu	37	3	184297425	184297425	+	Intron	SNP	G	T	T			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ESCO2	157570	broad.mit.edu	37	8	27645382	27645382	+	Intron	SNP	T	C	C			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ETV1	2115	broad.mit.edu	37	7	13950827	13950827	+	Intron	SNP	C	A	A			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ETV1	2115	broad.mit.edu	37	7	13971234	13971234	+	Missense_Mutation	SNP	T	A	A			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EVC	2121	broad.mit.edu	37	4	5754652	5754652	+	Silent	SNP	G	T	T			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EXOSC9	5393	broad.mit.edu	37	4	122734443	122734443	+	Silent	SNP	A	T	T			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EYA4	2070	broad.mit.edu	37	6	133782348	133782348	+	Intron	SNP	T	C	C			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EYA4	2070	broad.mit.edu	37	6	133849905	133849905	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
F8	2157	broad.mit.edu	37	X	154128268	154128268	+	Intron	SNP	T	A	A			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
F8	2157	broad.mit.edu	37	X	154157090	154157090	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
F9	2158	broad.mit.edu	37	X	138642899	138642899	+	Splice_Site	SNP	G	T	T			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FABP2	2169	broad.mit.edu	37	4	120240643	120240643	+	Intron	SNP	T	C	C			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAF1	11124	broad.mit.edu	37	1	51048260	51048260	+	Intron	SNP	T	A	A			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM120B	84498	broad.mit.edu	37	6	170639495	170639495	+	Intron	SNP	G	C	C			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM13B	51306	broad.mit.edu	37	5	137289287	137289287	+	Intron	SNP	G	A	A			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM177B	400823	broad.mit.edu	37	1	222923317	222923317	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM190B	54462	broad.mit.edu	37	10	86131530	86131530	+	Nonsense_Mutation	SNP	C	A	A			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM193A	8603	broad.mit.edu	37	4	2674026	2674026	+	Missense_Mutation	SNP	A	C	C			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM41C	284593	broad.mit.edu	37	1	809846	809846	+	RNA	SNP	A	G	G	rs117421153	by1000genomes	TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM47C	442444	broad.mit.edu	37	X	37029629	37029629	+	3'UTR	SNP	C	A	A			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM48B1	100130302	broad.mit.edu	37	X	24382893	24382893	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FANCB	2187	broad.mit.edu	37	X	14863236	14863236	+	Missense_Mutation	SNP	C	G	G			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAP	2191	broad.mit.edu	37	2	163066355	163066355	+	Intron	SNP	C	A	A			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAT3	120114	broad.mit.edu	37	11	92088374	92088374	+	Silent	SNP	G	T	T			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FATE1	89885	broad.mit.edu	37	X	150891306	150891306	+	3'UTR	SNP	C	A	A			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBLN1	2192	broad.mit.edu	37	22	45960776	45960776	+	Intron	SNP	G	T	T			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBN3	84467	broad.mit.edu	37	19	8156282	8156282	+	Intron	SNP	T	G	G			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBXO21	23014	broad.mit.edu	37	12	117593773	117593773	+	Intron	SNP	C	G	G			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FCAMR	83953	broad.mit.edu	37	1	207143407	207143407	+	Intron	SNP	C	A	A			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FCGBP	8857	broad.mit.edu	37	19	40430472	40430472	+	Missense_Mutation	SNP	T	G	G			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FCRL2	79368	broad.mit.edu	37	1	157718563	157718563	+	Intron	SNP	C	A	A			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FCRL3	115352	broad.mit.edu	37	1	157667638	157667638	+	Missense_Mutation	SNP	C	G	G			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FDX1	2230	broad.mit.edu	37	11	110327794	110327794	+	Intron	SNP	A	G	G			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FES	2242	broad.mit.edu	37	15	91435198	91435198	+	Intron	SNP	A	G	G			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FEZ1	9638	broad.mit.edu	37	11	125351416	125351416	+	Intron	SNP	C	A	A			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FIG4	9896	broad.mit.edu	37	6	110086283	110086283	+	Missense_Mutation	SNP	G	A	A			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FKBP7	51661	broad.mit.edu	37	2	179342049	179342049	+	Intron	SNP	C	A	A			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLI1	2313	broad.mit.edu	37	11	128564201	128564201	+	Intron	SNP	C	A	A			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLNA	2316	broad.mit.edu	37	X	153582821	153582821	+	Missense_Mutation	SNP	C	G	G			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLNA	2316	broad.mit.edu	37	X	153596271	153596271	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLNB	2317	broad.mit.edu	37	3	58111327	58111327	+	Silent	SNP	G	C	C			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLT4	2324	broad.mit.edu	37	5	180047710	180047710	+	Nonsense_Mutation	SNP	C	A	A	rs144822344		TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FMR1NB	158521	broad.mit.edu	37	X	147106586	147106586	+	Intron	SNP	G	A	A			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FN1	2335	broad.mit.edu	37	2	216263921	216263921	+	Intron	SNP	G	T	T			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FN1	2335	broad.mit.edu	37	2	216296710	216296710	+	Intron	SNP	G	A	A			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FOLH1	2346	broad.mit.edu	37	11	49204782	49204782	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FOXD1	2297	broad.mit.edu	37	5	72743820	72743820	+	Missense_Mutation	SNP	A	T	T			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FOXD4L1	200350	broad.mit.edu	37	2	114258219	114258219	+	3'UTR	SNP	A	T	T			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FOXO4	4303	broad.mit.edu	37	X	70321152	70321152	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FRMD4B	23150	broad.mit.edu	37	3	69265515	69265515	+	Intron	SNP	A	G	G			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FRMPD1	22844	broad.mit.edu	37	9	37745436	37745436	+	Missense_Mutation	SNP	C	T	T			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FRMPD4	9758	broad.mit.edu	37	X	12627817	12627817	+	Intron	SNP	T	G	G			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FRMPD4	9758	broad.mit.edu	37	X	12722395	12722396	+	Intron	DNP	CC	AA	AA			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FSTL5	56884	broad.mit.edu	37	4	162459211	162459211	+	Intron	SNP	T	C	C	rs78198058	by1000genomes	TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GAB4	128954	broad.mit.edu	37	22	17488963	17488963	+	Silent	SNP	T	G	G			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABBR1	2550	broad.mit.edu	37	6	29595311	29595311	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABRA5	2558	broad.mit.edu	37	15	27159949	27159949	+	Splice_Site	SNP	G	T	T			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABRR2	2570	broad.mit.edu	37	6	89981397	89981397	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABRR3	200959	broad.mit.edu	37	3	97753563	97753563	+	Intron	SNP	T	C	C			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GALNT6	11226	broad.mit.edu	37	12	51773084	51773084	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GAP43	2596	broad.mit.edu	37	3	115395236	115395236	+	Missense_Mutation	SNP	G	C	C			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GAS5	60674	broad.mit.edu	37	1	173836053	173836053	+	Intron	SNP	A	G	G			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GAS7	8522	broad.mit.edu	37	17	9820438	9820438	+	3'UTR	SNP	C	T	T			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GBA3	57733	broad.mit.edu	37	4	22749429	22749429	+	Frame_Shift_Del	DEL	A	-	-			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GCKR	2646	broad.mit.edu	37	2	27726407	27726407	+	Nonsense_Mutation	SNP	C	A	A			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GCKR	2646	broad.mit.edu	37	2	27726409	27726409	+	Missense_Mutation	SNP	A	T	T			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GCLC	2729	broad.mit.edu	37	6	53364800	53364800	+	Intron	SNP	C	T	T			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GDF2	2658	broad.mit.edu	37	10	48416263	48416263	+	Intron	SNP	A	C	C			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GDI1	2664	broad.mit.edu	37	X	153667324	153667324	+	Intron	SNP	C	A	A			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GDI2	2665	broad.mit.edu	37	10	5815929	5815929	+	Intron	SNP	T	A	A			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GEMIN5	25929	broad.mit.edu	37	5	154270801	154270801	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GFRAL	389400	broad.mit.edu	37	6	55216094	55216094	+	Silent	SNP	T	C	C			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GH1	2688	broad.mit.edu	37	17	61996176	61996176	+	5'UTR	SNP	G	A	A			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GH2	2689	broad.mit.edu	37	17	61959201	61959201	+	5'UTR	SNP	G	A	A			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLIS1	148979	broad.mit.edu	37	1	53995556	53995556	+	Missense_Mutation	SNP	C	G	G			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLRA4	441509	broad.mit.edu	37	X	102962477	102962477	+	Intron	SNP	G	T	T			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLT1D1	144423	broad.mit.edu	37	12	129429156	129429156	+	Intron	SNP	A	T	T			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLUD2	2747	broad.mit.edu	37	X	120182428	120182428	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GM2A	2760	broad.mit.edu	37	5	150761733	150761733	+	Intron	SNP	C	A	A			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GNAT1	2779	broad.mit.edu	37	3	50230772	50230772	+	Missense_Mutation	SNP	A	G	G			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GOLGB1	2804	broad.mit.edu	37	3	121400812	121400812	+	Intron	SNP	T	G	G			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPKOW	27238	broad.mit.edu	37	X	48972658	48972658	+	Silent	SNP	G	C	C			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPLD1	2822	broad.mit.edu	37	6	24447133	24447133	+	Missense_Mutation	SNP	G	A	A			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR174	84636	broad.mit.edu	37	X	78426678	78426678	+	Missense_Mutation	SNP	G	C	C			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPX5	2880	broad.mit.edu	37	6	28501899	28501899	+	Silent	SNP	C	T	T			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPX7	2882	broad.mit.edu	37	1	53074127	53074127	+	3'UTR	SNP	C	A	A			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRIA4	2893	broad.mit.edu	37	11	105482975	105482975	+	Intron	SNP	A	C	C			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRIK1	2897	broad.mit.edu	37	21	31066378	31066378	+	Silent	SNP	C	A	A			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRIN2A	2903	broad.mit.edu	37	16	9857220	9857220	+	Missense_Mutation	SNP	T	A	A			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRIN2B	2904	broad.mit.edu	37	12	13717085	13717085	+	Silent	SNP	G	A	A			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRIN2C	2905	broad.mit.edu	37	17	72846704	72846704	+	Missense_Mutation	SNP	T	A	A			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRIPAP1	56850	broad.mit.edu	37	X	48847292	48847292	+	Intron	SNP	T	A	A			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRM4	2914	broad.mit.edu	37	6	34003675	34003675	+	Missense_Mutation	SNP	G	A	A			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRM5	2915	broad.mit.edu	37	11	88780709	88780709	+	Missense_Mutation	SNP	T	A	A			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRM8	2918	broad.mit.edu	37	7	126410120	126410120	+	Splice_Site	SNP	C	A	A			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GSPT2	23708	broad.mit.edu	37	X	51486783	51486783	+	Nonsense_Mutation	SNP	G	T	T			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GSTM4	2948	broad.mit.edu	37	1	110201418	110201418	+	Intron	SNP	A	T	T			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GUCA1B	2979	broad.mit.edu	37	6	42162358	42162358	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GYPA	2993	broad.mit.edu	37	4	145039783	145039783	+	Intron	SNP	A	G	G			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HAPLN1	1404	broad.mit.edu	37	5	82937473	82937474	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HDAC6	10013	broad.mit.edu	37	X	48674127	48674127	+	Intron	SNP	G	T	T			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HDAC9	9734	broad.mit.edu	37	7	18801963	18801963	+	Intron	SNP	G	A	A			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HEG1	57493	broad.mit.edu	37	3	124746194	124746194	+	Silent	SNP	C	A	A			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HEPHL1	341208	broad.mit.edu	37	11	93837701	93837701	+	Missense_Mutation	SNP	A	G	G			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HEPH	9843	broad.mit.edu	37	X	65415023	65415023	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HERC2	8924	broad.mit.edu	37	15	28473613	28473613	+	Intron	SNP	C	A	A			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HHLA2	11148	broad.mit.edu	37	3	108081176	108081176	+	Intron	DEL	T	-	-	rs78277135		TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HK3	3101	broad.mit.edu	37	5	176314548	176314549	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HNF4A	3172	broad.mit.edu	37	20	43042474	43042474	+	Intron	SNP	C	G	G			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HOOK3	84376	broad.mit.edu	37	8	42865485	42865485	+	Missense_Mutation	SNP	G	C	C			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HOXB9	3219	broad.mit.edu	37	17	46700481	46700481	+	Missense_Mutation	SNP	G	C	C			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HS2ST1	9653	broad.mit.edu	37	1	87512040	87512040	+	Intron	SNP	A	T	T			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HSD17B13	345275	broad.mit.edu	37	4	88239557	88239557	+	Missense_Mutation	SNP	C	T	T			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HTN3	3347	broad.mit.edu	37	4	70897889	70897889	+	Intron	SNP	G	C	C			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IDO1	3620	broad.mit.edu	37	8	39776266	39776266	+	Intron	DEL	A	-	-			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IFNGR2	3460	broad.mit.edu	37	21	34793969	34793969	+	Missense_Mutation	SNP	C	T	T			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IFT80	57560	broad.mit.edu	37	3	159998646	159998646	+	Intron	SNP	T	C	C			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IGSF22	283284	broad.mit.edu	37	11	18731191	18731191	+	Missense_Mutation	SNP	G	C	C			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IGSF3	3321	broad.mit.edu	37	1	117122485	117122485	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IKBIP	121457	broad.mit.edu	37	12	99019842	99019842	+	Intron	SNP	T	C	C			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL18RAP	8807	broad.mit.edu	37	2	103061712	103061712	+	Missense_Mutation	SNP	G	C	C			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL1RAPL1	11141	broad.mit.edu	37	X	29973708	29973708	+	Missense_Mutation	SNP	A	G	G			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
INPP5D	3635	broad.mit.edu	37	2	234104168	234104168	+	Intron	SNP	G	A	A			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IQGAP1	8826	broad.mit.edu	37	15	90969509	90969509	+	Intron	SNP	C	T	T			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IRAK3	11213	broad.mit.edu	37	12	66638982	66638982	+	Silent	SNP	C	T	T			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IRX2	153572	broad.mit.edu	37	5	2749032	2749032	+	Missense_Mutation	SNP	C	G	G			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGA2	3673	broad.mit.edu	37	5	52371155	52371155	+	Intron	DEL	C	-	-			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGAL	3683	broad.mit.edu	37	16	30486512	30486512	+	Intron	SNP	G	T	T			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGAX	3687	broad.mit.edu	37	16	31372509	31372509	+	Silent	SNP	G	A	A			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGB1BP3	27231	broad.mit.edu	37	19	3942008	3942008	+	Intron	SNP	A	T	T			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KALRN	8997	broad.mit.edu	37	3	124438335	124438335	+	3'UTR	SNP	T	C	C			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNB1	3745	broad.mit.edu	37	20	47989929	47989929	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA0125	9834	broad.mit.edu	37	14	106357003	106357003	+	Intron	SNP	C	A	A			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA0284	283638	broad.mit.edu	37	14	105350364	105350364	+	Missense_Mutation	SNP	G	C	C			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA0922	23240	broad.mit.edu	37	4	154504246	154504246	+	Intron	SNP	G	T	T			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1109	84162	broad.mit.edu	37	4	123271219	123271219	+	Silent	SNP	A	T	T			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1210	57481	broad.mit.edu	37	X	118242271	118242271	+	Intron	SNP	C	T	T			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1211	57482	broad.mit.edu	37	4	57181643	57181643	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF20A	10112	broad.mit.edu	37	5	137515415	137515415	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF4A	24137	broad.mit.edu	37	X	69622419	69622419	+	Missense_Mutation	SNP	T	A	A			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF5A	3798	broad.mit.edu	37	12	57960909	57960909	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIRREL2	84063	broad.mit.edu	37	19	36350399	36350399	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLHL26	55295	broad.mit.edu	37	19	18778558	18778558	+	Missense_Mutation	SNP	C	G	G			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLHL4	56062	broad.mit.edu	37	X	86869645	86869645	+	Intron	SNP	A	G	G			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLHL9	55958	broad.mit.edu	37	9	21333334	21333334	+	Missense_Mutation	SNP	A	G	G			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRT2	3849	broad.mit.edu	37	12	53044148	53044148	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRT84	3890	broad.mit.edu	37	12	52778630	52778630	+	Intron	SNP	C	G	G			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRTAP11-1	337880	broad.mit.edu	37	21	32253887	32253887	+	5'Flank	SNP	C	A	A			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMA1	284217	broad.mit.edu	37	18	6971840	6971840	+	Intron	SNP	C	G	G			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMA4	3910	broad.mit.edu	37	6	112513053	112513053	+	Splice_Site	SNP	C	A	A			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LARS	51520	broad.mit.edu	37	5	145523006	145523006	+	Missense_Mutation	SNP	G	A	A			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LEPR	3953	broad.mit.edu	37	1	66038102	66038102	+	Missense_Mutation	SNP	A	T	T			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LIN54	132660	broad.mit.edu	37	4	83852072	83852072	+	Intron	SNP	A	G	G			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LMO7	4008	broad.mit.edu	37	13	76409483	76409483	+	Intron	SNP	T	C	C			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC399815	399815	broad.mit.edu	37	10	124647838	124647838	+	Nonsense_Mutation	SNP	C	G	G			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC96610	96610	broad.mit.edu	37	22	23090124	23090124	+	RNA	SNP	T	G	G			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC14	9684	broad.mit.edu	37	8	145746223	145746223	+	Intron	SNP	A	G	G			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC50	123872	broad.mit.edu	37	16	84182725	84182725	+	Missense_Mutation	SNP	G	A	A			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRIQ1	84125	broad.mit.edu	37	12	85449837	85449837	+	Silent	SNP	A	T	T			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LSAMP	4045	broad.mit.edu	37	3	115805416	115805416	+	Intron	SNP	A	T	T			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LTV1	84946	broad.mit.edu	37	6	144178809	144178809	+	Intron	SNP	C	T	T			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LYNX1	66004	broad.mit.edu	37	8	143857447	143857447	+	5'UTR	SNP	C	A	A			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAGEB16	139604	broad.mit.edu	37	X	35821060	35821060	+	Silent	SNP	C	A	A			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAP1LC3B2	643246	broad.mit.edu	37	12	117013722	117013722	+	5'UTR	SNP	G	T	T			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAP2K3	5606	broad.mit.edu	37	17	21207629	21207629	+	Intron	SNP	G	T	T			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MARK1	4139	broad.mit.edu	37	1	220791515	220791515	+	Intron	SNP	A	G	G			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MARK4	57787	broad.mit.edu	37	19	45805710	45805710	+	Silent	SNP	G	T	T			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MARS2	92935	broad.mit.edu	37	2	198570098	198570098	+	5'UTR	SNP	G	A	A			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MATK	4145	broad.mit.edu	37	19	3779791	3779791	+	Silent	SNP	G	T	T			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MCC	4163	broad.mit.edu	37	5	112421168	112421168	+	Intron	SNP	C	T	T			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MCF2	4168	broad.mit.edu	37	X	138689898	138689898	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MCM10	55388	broad.mit.edu	37	10	13214901	13214901	+	Intron	SNP	G	T	T			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MCPH1	79648	broad.mit.edu	37	8	6338124	6338124	+	Intron	SNP	T	C	C			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MDGA2	161357	broad.mit.edu	37	14	47504196	47504196	+	Intron	SNP	A	G	G			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MDN1	23195	broad.mit.edu	37	6	90437795	90437795	+	Intron	SNP	C	A	A			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ME1	4199	broad.mit.edu	37	6	84102595	84102595	+	Intron	SNP	C	G	G			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MED12	9968	broad.mit.edu	37	X	70341755	70341755	+	Intron	SNP	T	G	G			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MED25	81857	broad.mit.edu	37	19	50334760	50334760	+	Intron	SNP	G	T	T			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MEFV	4210	broad.mit.edu	37	16	3304798	3304798	+	Intron	SNP	G	A	A			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MEIS1	4211	broad.mit.edu	37	2	66739408	66739408	+	Missense_Mutation	SNP	G	C	C			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MGAM	8972	broad.mit.edu	37	7	141767225	141767225	+	Intron	SNP	C	T	T	rs7778384	by1000genomes	TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MGA	23269	broad.mit.edu	37	15	42005461	42005461	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MICAL2	9645	broad.mit.edu	37	11	12263846	12263846	+	Missense_Mutation	SNP	G	A	A			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MICAL2	9645	broad.mit.edu	37	11	12264342	12264342	+	Intron	SNP	C	T	T			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MIR890	100126303	broad.mit.edu	37	X	145078046	145078046	+	5'Flank	SNP	C	A	A			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MLL2	8085	broad.mit.edu	37	12	49432983	49432983	+	Intron	SNP	A	C	C			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MLL2	8085	broad.mit.edu	37	12	49445464	49445465	+	Nonsense_Mutation	DNP	CC	AA	AA			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MLL3	58508	broad.mit.edu	37	7	151962287	151962287	+	Missense_Mutation	SNP	T	A	A			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MMACHC	25974	broad.mit.edu	37	1	45965897	45965897	+	5'UTR	SNP	T	C	C			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MMP15	4324	broad.mit.edu	37	16	58073752	58073752	+	Intron	SNP	G	T	T			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MMP16	4325	broad.mit.edu	37	8	89209482	89209482	+	Silent	SNP	C	T	T			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MORC1	27136	broad.mit.edu	37	3	108788662	108788662	+	Intron	SNP	G	A	A			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MPP1	4354	broad.mit.edu	37	X	154014797	154014797	+	Intron	SNP	G	T	T			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MRO	83876	broad.mit.edu	37	18	48350201	48350201	+	Intron	SNP	A	T	T			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MS4A1	931	broad.mit.edu	37	11	60231890	60231890	+	Intron	SNP	C	A	A			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MSC	9242	broad.mit.edu	37	8	72754742	72754742	+	3'UTR	SNP	C	A	A			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MSH2	4436	broad.mit.edu	37	2	47635523	47635524	+	Intron	INS	-	T	T			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MSH2	4436	broad.mit.edu	37	2	47643558	47643558	+	Missense_Mutation	SNP	A	G	G			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MSTN	2660	broad.mit.edu	37	2	190926980	190926980	+	Missense_Mutation	SNP	T	A	A			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MSTO2P	100129405	broad.mit.edu	37	1	155717352	155717352	+	Splice_Site	SNP	A	C	C			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTF2	22823	broad.mit.edu	37	1	93602318	93602327	+	Frame_Shift_Del	DEL	AGAGCACTCC	-	-			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTHFD1L	25902	broad.mit.edu	37	6	151247409	151247409	+	Nonsense_Mutation	SNP	G	T	T			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTIF2	4528	broad.mit.edu	37	2	55464680	55464680	+	Intron	SNP	T	C	C			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTMR8	55613	broad.mit.edu	37	X	63444664	63444664	+	Intron	SNP	C	A	A			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTMR8	55613	broad.mit.edu	37	X	63488738	63488738	+	Missense_Mutation	SNP	C	T	T			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC16	94025	broad.mit.edu	37	19	9049765	9049765	+	Silent	SNP	T	C	C			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC16	94025	broad.mit.edu	37	19	9063480	9063480	+	Missense_Mutation	SNP	G	C	C			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC16	94025	broad.mit.edu	37	19	9091090	9091090	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC17	140453	broad.mit.edu	37	7	100675733	100675733	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYBPC1	4604	broad.mit.edu	37	12	102038549	102038549	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH15	22989	broad.mit.edu	37	3	108127310	108127310	+	Intron	SNP	T	A	A			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH2	4620	broad.mit.edu	37	17	10443380	10443380	+	Missense_Mutation	SNP	C	T	T			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH4	4622	broad.mit.edu	37	17	10348183	10348183	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO1A	4640	broad.mit.edu	37	12	57422590	57422590	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NAALAD2	10003	broad.mit.edu	37	11	89868067	89868067	+	Intron	SNP	A	G	G			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NAGA	4668	broad.mit.edu	37	22	42456311	42456311	+	Missense_Mutation	SNP	A	G	G			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NAT15	79903	broad.mit.edu	37	16	3533373	3533373	+	Missense_Mutation	SNP	A	T	T			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBEA	26960	broad.mit.edu	37	13	36167465	36167465	+	Missense_Mutation	SNP	G	A	A			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCAPD3	23310	broad.mit.edu	37	11	134038592	134038592	+	Intron	SNP	A	G	G			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCOA1	8648	broad.mit.edu	37	2	24951088	24951088	+	Intron	SNP	G	A	A			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCR1	9437	broad.mit.edu	37	19	55424268	55424268	+	3'UTR	SNP	G	T	T			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NDRG2	57447	broad.mit.edu	37	14	21490120	21490120	+	Intron	SNP	A	G	G			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NDUFB5	4711	broad.mit.edu	37	3	179322663	179322663	+	Frame_Shift_Del	DEL	C	-	-	rs2271840		TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NDUFS3	4722	broad.mit.edu	37	11	47603679	47603679	+	Missense_Mutation	SNP	A	G	G			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NECAP1	25977	broad.mit.edu	37	12	8248380	8248380	+	Intron	SNP	G	A	A			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NEDD4	4734	broad.mit.edu	37	15	56161820	56161820	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NEFM	4741	broad.mit.edu	37	8	24775339	24775339	+	Silent	SNP	G	T	T			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NEK11	79858	broad.mit.edu	37	3	130748792	130748792	+	Intron	SNP	A	G	G			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NETO1	81832	broad.mit.edu	37	18	70417732	70417732	+	Missense_Mutation	SNP	C	T	T	rs140307788	byFrequency	TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NGEF	25791	broad.mit.edu	37	2	233839290	233839290	+	Intron	SNP	T	C	C			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NGFRAP1	27018	broad.mit.edu	37	X	102632353	102632353	+	Intron	SNP	A	T	T			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLGN1	22871	broad.mit.edu	37	3	173993224	173993224	+	Missense_Mutation	SNP	A	T	T			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLRP11	204801	broad.mit.edu	37	19	56320320	56320320	+	Silent	SNP	A	G	G			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLRP12	91662	broad.mit.edu	37	19	54327134	54327134	+	Intron	SNP	C	A	A			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NMUR1	10316	broad.mit.edu	37	2	232392962	232392962	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NOC3L	64318	broad.mit.edu	37	10	96108914	96108914	+	Intron	SNP	T	G	G			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NOS2	4843	broad.mit.edu	37	17	26095988	26095988	+	Intron	SNP	T	A	A			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NOTCH1	4851	broad.mit.edu	37	9	139413252	139413252	+	Missense_Mutation	SNP	T	C	C			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NPAS4	266743	broad.mit.edu	37	11	66191875	66191875	+	Missense_Mutation	SNP	C	T	T			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NPR1	4881	broad.mit.edu	37	1	153660565	153660565	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRG3	10718	broad.mit.edu	37	10	84498383	84498383	+	Missense_Mutation	SNP	C	G	G			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRK	203447	broad.mit.edu	37	X	105167150	105167150	+	Missense_Mutation	SNP	T	A	A			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NTM	50863	broad.mit.edu	37	11	132081940	132081940	+	Missense_Mutation	SNP	C	T	T			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NTSR1	4923	broad.mit.edu	37	20	61389757	61389757	+	Intron	SNP	C	A	A			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NUP188	23511	broad.mit.edu	37	9	131749115	131749115	+	Missense_Mutation	SNP	C	T	T	rs148207291		TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NXF2B	728343	broad.mit.edu	37	X	101576162	101576162	+	Intron	SNP	A	C	C			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NXF3	56000	broad.mit.edu	37	X	102338042	102338042	+	Intron	SNP	G	C	C			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NXF4	55999	broad.mit.edu	37	X	101802769	101802770	+	5'Flank	DNP	GG	AT	AT			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NXF4	55999	broad.mit.edu	37	X	101805165	101805165	+	Intron	SNP	G	T	T			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NXF4	55999	broad.mit.edu	37	X	101826337	101826337	+	Intron	SNP	T	C	C			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR10K2	391107	broad.mit.edu	37	1	158390049	158390049	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR12D2	26529	broad.mit.edu	37	6	29364862	29364862	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR14C36	127066	broad.mit.edu	37	1	248512680	248512680	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR1J4	26219	broad.mit.edu	37	9	125281945	125281945	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR1N2	138882	broad.mit.edu	37	9	125316138	125316138	+	Silent	SNP	G	A	A			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2D3	120775	broad.mit.edu	37	11	6942637	6942637	+	Silent	SNP	C	A	A			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2L2	26246	broad.mit.edu	37	1	248201826	248201826	+	Missense_Mutation	SNP	A	G	G			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2M2	391194	broad.mit.edu	37	1	248343519	248343519	+	Missense_Mutation	SNP	G	A	A	rs143926960		TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2T2	401992	broad.mit.edu	37	1	248616203	248616203	+	Silent	SNP	C	A	A			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2V2	285659	broad.mit.edu	37	5	180581967	180581967	+	Missense_Mutation	SNP	T	A	A			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR51F1	256892	broad.mit.edu	37	11	4790455	4790455	+	Silent	SNP	G	A	A			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR51T1	401665	broad.mit.edu	37	11	4904111	4904111	+	3'UTR	SNP	T	A	A			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR52R1	119695	broad.mit.edu	37	11	4825433	4825433	+	Nonsense_Mutation	SNP	C	A	A	rs76140227	byFrequency;by1000genomes	TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR5AS1	219447	broad.mit.edu	37	11	55798274	55798274	+	Missense_Mutation	SNP	G	A	A			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR6K2	81448	broad.mit.edu	37	1	158670076	158670076	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR6K2	81448	broad.mit.edu	37	1	158670505	158670505	+	5'Flank	SNP	T	A	A			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR6N2	81442	broad.mit.edu	37	1	158747472	158747472	+	5'Flank	SNP	G	A	A			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR8J3	81168	broad.mit.edu	37	11	55904560	55904560	+	Missense_Mutation	SNP	A	T	T			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OTUD5	55593	broad.mit.edu	37	X	48780529	48780529	+	Silent	SNP	C	A	A	rs138137225		TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OXR1	55074	broad.mit.edu	37	8	107752609	107752609	+	Silent	SNP	A	G	G			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
P2RY10	27334	broad.mit.edu	37	X	78216792	78216792	+	Missense_Mutation	SNP	T	C	C			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAGE5	90737	broad.mit.edu	37	X	55249303	55249303	+	Intron	SNP	G	T	T			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PALLD	23022	broad.mit.edu	37	4	169842780	169842780	+	Silent	SNP	G	T	T			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PARP8	79668	broad.mit.edu	37	5	50056133	50056133	+	Missense_Mutation	SNP	A	T	T			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PARVA	55742	broad.mit.edu	37	11	12518121	12518121	+	Missense_Mutation	SNP	A	G	G			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCBP3	54039	broad.mit.edu	37	21	47333886	47333886	+	Missense_Mutation	SNP	A	G	G			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHA12	56137	broad.mit.edu	37	5	140256399	140256399	+	Missense_Mutation	SNP	G	A	A			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHB2	56133	broad.mit.edu	37	5	140475631	140475631	+	Nonsense_Mutation	SNP	C	A	A			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHB3	56132	broad.mit.edu	37	5	140480379	140480379	+	Missense_Mutation	SNP	C	T	T			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHB8	56128	broad.mit.edu	37	5	140559000	140559000	+	Missense_Mutation	SNP	G	C	C			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHGA5	56110	broad.mit.edu	37	5	140744879	140744879	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCLO	27445	broad.mit.edu	37	7	82387927	82387927	+	Missense_Mutation	SNP	C	G	G			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCLO	27445	broad.mit.edu	37	7	82579280	82579280	+	Silent	SNP	G	T	T			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCYT2	5833	broad.mit.edu	37	17	79866977	79866977	+	Intron	SNP	C	A	A			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE10A	10846	broad.mit.edu	37	6	165843644	165843644	+	Intron	SNP	T	A	A			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE4B	5142	broad.mit.edu	37	1	66713219	66713219	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDHA2	5161	broad.mit.edu	37	4	96761509	96761509	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDILT	204474	broad.mit.edu	37	16	20387379	20387380	+	Intron	DNP	GG	TT	TT			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDXDC1	23042	broad.mit.edu	37	16	15103631	15103631	+	Intron	SNP	G	A	A			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDZD2	23037	broad.mit.edu	37	5	31725709	31725709	+	Intron	SNP	G	T	T			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PGBD5	79605	broad.mit.edu	37	1	230472732	230472732	+	Intron	SNP	C	A	A			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PGM5	5239	broad.mit.edu	37	9	71007064	71007064	+	Intron	SNP	G	T	T			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PHKA1	5255	broad.mit.edu	37	X	71804080	71804080	+	Intron	SNP	G	T	T			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIGG	54872	broad.mit.edu	37	4	502491	502491	+	Intron	SNP	A	G	G			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIGQ	9091	broad.mit.edu	37	16	629205	629205	+	Intron	SNP	A	G	G			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIK3R4	30849	broad.mit.edu	37	3	130452634	130452634	+	Missense_Mutation	SNP	A	C	C			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIKFYVE	200576	broad.mit.edu	37	2	209182591	209182591	+	Missense_Mutation	SNP	A	T	T			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIP4K2C	79837	broad.mit.edu	37	12	57989697	57989697	+	Silent	SNP	C	T	T			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIP4K2C	79837	broad.mit.edu	37	12	57994654	57994654	+	Missense_Mutation	SNP	C	T	T			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIWIL3	440822	broad.mit.edu	37	22	25145503	25145503	+	Intron	SNP	A	G	G			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PKHD1L1	93035	broad.mit.edu	37	8	110420476	110420476	+	Intron	SNP	C	A	A			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLAC1L	219990	broad.mit.edu	37	11	59812289	59812289	+	Intron	SNP	T	C	C			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLAC9	219348	broad.mit.edu	37	10	81903952	81903952	+	Intron	SNP	T	A	A			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLCZ1	89869	broad.mit.edu	37	12	18836325	18836325	+	Intron	SNP	C	T	T			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLG	5340	broad.mit.edu	37	6	161134032	161134032	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PNLIPRP3	119548	broad.mit.edu	37	10	118225441	118225441	+	Intron	SNP	C	G	G			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PODN	127435	broad.mit.edu	37	1	53544461	53544461	+	Missense_Mutation	SNP	C	T	T	rs145236540		TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POLB	5423	broad.mit.edu	37	8	42196225	42196225	+	Intron	SNP	G	T	T			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POLB	5423	broad.mit.edu	37	8	42218898	42218898	+	Intron	SNP	A	G	G			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POLQ	10721	broad.mit.edu	37	3	121208549	121208549	+	Missense_Mutation	SNP	G	C	C			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POTEG	404785	broad.mit.edu	37	14	19553741	19553741	+	Missense_Mutation	SNP	T	A	A			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POU1F1	5449	broad.mit.edu	37	3	87311146	87311146	+	Intron	SNP	G	A	A			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POU2F2	5452	broad.mit.edu	37	19	42599863	42599863	+	Intron	SNP	C	A	A			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POU2F2	5452	broad.mit.edu	37	19	42599872	42599872	+	Intron	SNP	G	A	A			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POU4F2	5458	broad.mit.edu	37	4	147562010	147562010	+	3'UTR	SNP	T	A	A			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPAPDC1A	196051	broad.mit.edu	37	10	122334829	122334830	+	Intron	DNP	GG	TT	TT			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPEF1	5475	broad.mit.edu	37	X	18836203	18836203	+	Missense_Mutation	SNP	G	A	A			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPFIA2	8499	broad.mit.edu	37	12	81751934	81751934	+	Missense_Mutation	SNP	G	A	A			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPP1R13B	23368	broad.mit.edu	37	14	104220591	104220591	+	Intron	SNP	G	C	C			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPP2R2D	55844	broad.mit.edu	37	10	133758916	133758916	+	Missense_Mutation	SNP	G	A	A			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRDM5	11107	broad.mit.edu	37	4	121828811	121828811	+	Intron	SNP	C	A	A			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PREX1	57580	broad.mit.edu	37	20	47256395	47256395	+	Silent	SNP	C	A	A			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRG4	10216	broad.mit.edu	37	1	186276565	186276565	+	Missense_Mutation	SNP	A	G	G			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRICKLE3	4007	broad.mit.edu	37	X	49034397	49034397	+	Nonsense_Mutation	SNP	G	T	T			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRKDC	5591	broad.mit.edu	37	8	48710729	48710729	+	Intron	SNP	T	A	A			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRKRIP1	79706	broad.mit.edu	37	7	102040200	102040200	+	Intron	SNP	G	C	C			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRMT1	3276	broad.mit.edu	37	19	50180439	50180439	+	5'Flank	SNP	G	A	A			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRR23A	729627	broad.mit.edu	37	3	138724422	138724423	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSG1	5669	broad.mit.edu	37	19	43359626	43359626	+	Intron	SNP	T	C	C			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSMD4	5710	broad.mit.edu	37	1	151234801	151234801	+	Intron	SNP	G	A	A			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTGFR	5737	broad.mit.edu	37	1	79002383	79002383	+	3'UTR	SNP	C	A	A			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTH1R	5745	broad.mit.edu	37	3	46944143	46944143	+	Missense_Mutation	SNP	T	C	C			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRCAP	5790	broad.mit.edu	37	11	67203241	67203241	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRZ1	5803	broad.mit.edu	37	7	121653414	121653414	+	Silent	SNP	C	A	A			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PYDC2	152138	broad.mit.edu	37	3	191179085	191179085	+	Missense_Mutation	SNP	C	G	G			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAB33A	9363	broad.mit.edu	37	X	129306210	129306210	+	Silent	SNP	G	T	T			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RABGAP1	23637	broad.mit.edu	37	9	125752205	125752205	+	Intron	DEL	G	-	-			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAD51L3	5892	broad.mit.edu	37	17	33433505	33433505	+	Intron	SNP	A	G	G			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAI2	10742	broad.mit.edu	37	X	17819005	17819005	+	Missense_Mutation	SNP	C	T	T			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RANBP17	64901	broad.mit.edu	37	5	170626623	170626623	+	Intron	SNP	G	T	T			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAP2C	57826	broad.mit.edu	37	X	131351358	131351358	+	5'UTR	SNP	C	T	T			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAPGEF4	11069	broad.mit.edu	37	2	173659691	173659691	+	Intron	SNP	G	T	T			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RASGRF2	5924	broad.mit.edu	37	5	80388641	80388641	+	Missense_Mutation	SNP	C	T	T			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RASGRP4	115727	broad.mit.edu	37	19	38905688	38905688	+	Missense_Mutation	SNP	C	G	G			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
REEP1	65055	broad.mit.edu	37	2	86509394	86509394	+	Intron	SNP	C	T	T			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
REG1P	5969	broad.mit.edu	37	2	79364096	79364096	+	Intron	SNP	G	T	T			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
REG3G	130120	broad.mit.edu	37	2	79255397	79255397	+	Missense_Mutation	SNP	G	C	C			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RGS7	6000	broad.mit.edu	37	1	240966101	240966101	+	Intron	SNP	A	C	C			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RIBC1	158787	broad.mit.edu	37	X	53458022	53458022	+	3'UTR	SNP	C	T	T			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RICTOR	253260	broad.mit.edu	37	5	39021212	39021212	+	Missense_Mutation	SNP	G	A	A			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RIMS1	22999	broad.mit.edu	37	6	73102459	73102459	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RMND5A	64795	broad.mit.edu	37	2	87105988	87105988	+	Intron	SNP	C	A	A			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RMND5A	64795	broad.mit.edu	37	2	87110370	87110370	+	Intron	SNP	A	T	T			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNF212	285498	broad.mit.edu	37	4	1073534	1073534	+	Intron	SNP	C	T	T			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ROBO1	6091	broad.mit.edu	37	3	79639115	79639115	+	Intron	SNP	G	T	T			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPE65	6121	broad.mit.edu	37	1	68905310	68905310	+	Missense_Mutation	SNP	A	G	G			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPS6KA3	6197	broad.mit.edu	37	X	20181004	20181004	+	Intron	SNP	A	G	G			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RSPO3	84870	broad.mit.edu	37	6	127440428	127440428	+	Silent	SNP	C	A	A			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RTN1	6252	broad.mit.edu	37	14	60193880	60193880	+	Nonsense_Mutation	SNP	C	A	A			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR1	6261	broad.mit.edu	37	19	39009697	39009697	+	Intron	SNP	G	T	T			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR1	6261	broad.mit.edu	37	19	39063772	39063772	+	Intron	SNP	G	C	C			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR2	6262	broad.mit.edu	37	1	237538083	237538083	+	Nonsense_Mutation	SNP	G	T	T			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR2	6262	broad.mit.edu	37	1	237580397	237580397	+	Silent	SNP	T	A	A			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR2	6262	broad.mit.edu	37	1	237947531	237947531	+	Missense_Mutation	SNP	A	G	G			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR3	6263	broad.mit.edu	37	15	33835899	33835899	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR3	6263	broad.mit.edu	37	15	34130188	34130188	+	Missense_Mutation	SNP	G	A	A			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SACS	26278	broad.mit.edu	37	13	23915110	23915110	+	Missense_Mutation	SNP	T	A	A			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SAFB	6294	broad.mit.edu	37	19	5645430	5645430	+	Intron	SNP	A	G	G			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCN10A	6336	broad.mit.edu	37	3	38835224	38835224	+	Intron	SNP	G	A	A			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCN1A	6323	broad.mit.edu	37	2	166903268	166903268	+	Intron	DEL	G	-	-			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SDCCAG8	10806	broad.mit.edu	37	1	243542029	243542029	+	Missense_Mutation	SNP	G	C	C			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SDCCAG8	10806	broad.mit.edu	37	1	243579122	243579123	+	Missense_Mutation	DNP	GA	TG	TG			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEC14L3	266629	broad.mit.edu	37	22	30862947	30862947	+	Intron	SNP	T	G	G			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEC62	7095	broad.mit.edu	37	3	169710594	169710594	+	Missense_Mutation	SNP	A	C	C			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEMA3D	223117	broad.mit.edu	37	7	84647693	84647693	+	Intron	SNP	A	G	G			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEMA3D	223117	broad.mit.edu	37	7	84649437	84649437	+	Intron	SNP	A	G	G			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SENP7	57337	broad.mit.edu	37	3	101176101	101176101	+	Intron	SNP	T	A	A			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SERPINI2	5276	broad.mit.edu	37	3	167183295	167183295	+	Missense_Mutation	SNP	C	T	T			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SF3B4	10262	broad.mit.edu	37	1	149898282	149898282	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SFPQ	6421	broad.mit.edu	37	1	35652649	35652649	+	Missense_Mutation	SNP	C	A	A	rs144271953	by1000genomes	TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SH3BGRL	6451	broad.mit.edu	37	X	80552635	80552635	+	Intron	SNP	A	G	G			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SIGLEC5	8778	broad.mit.edu	37	19	52115520	52115520	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SIM1	6492	broad.mit.edu	37	6	100838768	100838768	+	Missense_Mutation	SNP	G	C	C			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC13A5	284111	broad.mit.edu	37	17	6610448	6610448	+	Missense_Mutation	SNP	G	A	A			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC15A2	6565	broad.mit.edu	37	3	121640968	121640968	+	Intron	SNP	T	C	C			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC22A25	387601	broad.mit.edu	37	11	62985020	62985020	+	Intron	SNP	C	T	T			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC25A23	79085	broad.mit.edu	37	19	6457633	6457633	+	Intron	SNP	T	C	C			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC25A31	83447	broad.mit.edu	37	4	128694757	128694757	+	3'UTR	SNP	G	T	T			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC2A13	114134	broad.mit.edu	37	12	40441975	40441975	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC30A10	55532	broad.mit.edu	37	1	220100417	220100417	+	Missense_Mutation	SNP	T	C	C			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC30A6	55676	broad.mit.edu	37	2	32417361	32417361	+	Intron	SNP	G	T	T			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC35E1	79939	broad.mit.edu	37	19	16664607	16664607	+	Silent	SNP	G	A	A			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC44A1	23446	broad.mit.edu	37	9	108071980	108071980	+	Intron	SNP	A	T	T			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC5A8	160728	broad.mit.edu	37	12	101581337	101581337	+	Intron	SNP	T	A	A			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC6A8	6535	broad.mit.edu	37	X	152958790	152958790	+	Missense_Mutation	SNP	A	T	T			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC6A9	6536	broad.mit.edu	37	1	44468471	44468471	+	Intron	SNP	A	G	G			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC7A5P2	387254	broad.mit.edu	37	16	21531392	21531392	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC9A11	284525	broad.mit.edu	37	1	173478744	173478744	+	Missense_Mutation	SNP	G	C	C			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC9A6	10479	broad.mit.edu	37	X	135067822	135067822	+	Missense_Mutation	SNP	A	T	T			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC9A6	10479	broad.mit.edu	37	X	135080746	135080746	+	Intron	SNP	T	C	C			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC9A9	285195	broad.mit.edu	37	3	143214238	143214238	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC9A9	285195	broad.mit.edu	37	3	143223078	143223078	+	Intron	SNP	C	A	A			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLCO1B3	28234	broad.mit.edu	37	12	21028140	21028140	+	Intron	SNP	G	T	T			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLIT3	6586	broad.mit.edu	37	5	168222600	168222600	+	Intron	SNP	A	G	G			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLIT3	6586	broad.mit.edu	37	5	168690706	168690706	+	Intron	SNP	C	A	A			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNORD50A	26799	broad.mit.edu	37	6	86387150	86387150	+	5'Flank	SNP	T	A	A			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNX5	27131	broad.mit.edu	37	20	17934792	17934792	+	Intron	SNP	T	C	C			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SP7	121340	broad.mit.edu	37	12	53722249	53722249	+	Missense_Mutation	SNP	C	G	G			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPAG9	9043	broad.mit.edu	37	17	49073994	49073994	+	Missense_Mutation	SNP	C	T	T			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPEF2	79925	broad.mit.edu	37	5	35793529	35793529	+	Intron	SNP	G	T	T			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPG7	6687	broad.mit.edu	37	16	89613071	89613071	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPTBN2	6712	broad.mit.edu	37	11	66455339	66455339	+	Silent	SNP	C	A	A			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPTB	6710	broad.mit.edu	37	14	65289696	65289696	+	Silent	SNP	G	T	T	rs147811055		TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPTLC3	55304	broad.mit.edu	37	20	13074325	13074325	+	Intron	SNP	G	A	A			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPTY2D1	144108	broad.mit.edu	37	11	18655719	18655719	+	Intron	SNP	A	T	T			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SRD5A3	79644	broad.mit.edu	37	4	56218482	56218482	+	Intron	SNP	G	A	A			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SRPK2	6733	broad.mit.edu	37	7	105029066	105029066	+	Intron	SNP	G	A	A			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SSTR1	6751	broad.mit.edu	37	14	38679067	38679067	+	Missense_Mutation	SNP	C	T	T			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SSX6	280657	broad.mit.edu	37	X	47976969	47976969	+	Intron	SNP	G	A	A			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ST6GALNAC3	256435	broad.mit.edu	37	1	76877592	76877592	+	Intron	DEL	A	-	-			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STAT1	6772	broad.mit.edu	37	2	191859968	191859968	+	Intron	SNP	T	A	A			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STXBP4	252983	broad.mit.edu	37	17	53078335	53078335	+	Intron	SNP	G	T	T			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SUPT6H	6830	broad.mit.edu	37	17	27015143	27015143	+	Frame_Shift_Del	DEL	G	-	-			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYT11	23208	broad.mit.edu	37	1	155850855	155850855	+	Intron	SNP	A	T	T			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYT4	6860	broad.mit.edu	37	18	40850395	40850395	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAF1	6872	broad.mit.edu	37	X	70617378	70617378	+	Intron	SNP	G	T	T			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAF6	6878	broad.mit.edu	37	7	99707700	99707700	+	Intron	SNP	T	G	G			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAF9B	51616	broad.mit.edu	37	X	77393166	77393166	+	Intron	SNP	G	T	T			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAGLN3	29114	broad.mit.edu	37	3	111719426	111719426	+	Intron	SNP	G	T	T			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TARP	445347	broad.mit.edu	37	7	38304888	38304889	+	Intron	INS	-	A	A			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBC1D19	55296	broad.mit.edu	37	4	26744202	26744202	+	Nonsense_Mutation	SNP	C	T	T	rs141345574		TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBC1D24	57465	broad.mit.edu	37	16	2569491	2569491	+	Intron	SNP	C	G	G			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBX22	50945	broad.mit.edu	37	X	79281068	79281068	+	Intron	SNP	G	C	C			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TCEAL5	340543	broad.mit.edu	37	X	102529697	102529697	+	Intron	SNP	C	G	G			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TCFL5	10732	broad.mit.edu	37	20	61491435	61491435	+	Intron	SNP	T	C	C			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TDO2	6999	broad.mit.edu	37	4	156831336	156831336	+	Missense_Mutation	SNP	G	C	C			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TEX14	56155	broad.mit.edu	37	17	56693591	56693591	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TFAP2B	7021	broad.mit.edu	37	6	50796255	50796255	+	Intron	SNP	G	A	A			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TFCP2L1	29842	broad.mit.edu	37	2	121999986	121999986	+	Silent	SNP	G	T	T			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TF	7018	broad.mit.edu	37	3	133481012	133481012	+	Intron	SNP	C	A	A			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TGFBI	7045	broad.mit.edu	37	5	135382901	135382902	+	Intron	INS	-	T	T			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TGM4	7047	broad.mit.edu	37	3	44935024	44935024	+	Intron	SNP	C	A	A			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TGM5	9333	broad.mit.edu	37	15	43552773	43552773	+	Silent	SNP	T	C	C			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
THSD7A	221981	broad.mit.edu	37	7	11860796	11860796	+	Intron	SNP	C	A	A			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM106A	113277	broad.mit.edu	37	17	41367709	41367709	+	Intron	SNP	A	G	G			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM14A	28978	broad.mit.edu	37	6	52548938	52548938	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM176A	55365	broad.mit.edu	37	7	150501866	150501866	+	Intron	SNP	C	T	T			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM185A	84548	broad.mit.edu	37	X	148693003	148693003	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM69	51249	broad.mit.edu	37	1	46156846	46156846	+	Intron	SNP	C	T	T			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM90A	646658	broad.mit.edu	37	14	74876055	74876055	+	Silent	SNP	C	T	T			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNRC6B	23112	broad.mit.edu	37	22	40717290	40717290	+	Intron	SNP	G	A	A			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TP53	7157	broad.mit.edu	37	17	7579414	7579414	+	Nonsense_Mutation	SNP	C	T	T			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPTE	7179	broad.mit.edu	37	21	10916334	10916334	+	Intron	SNP	C	A	A			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPX2	22974	broad.mit.edu	37	20	30382455	30382456	+	Intron	DNP	TC	AA	AA			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRAM1	23471	broad.mit.edu	37	8	71506886	71506886	+	Intron	SNP	A	C	C			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRAT1	50852	broad.mit.edu	37	3	108549696	108549696	+	Intron	SNP	A	G	G			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRHDE	29953	broad.mit.edu	37	12	72936110	72936110	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIM24	8805	broad.mit.edu	37	7	138189108	138189108	+	Silent	SNP	G	A	A			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIM48	79097	broad.mit.edu	37	11	55038377	55038378	+	3'UTR	DNP	CC	AT	AT			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIP12	9320	broad.mit.edu	37	2	230678748	230678748	+	Splice_Site	SNP	C	A	A			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRO	7216	broad.mit.edu	37	X	54949157	54949157	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPM4	54795	broad.mit.edu	37	19	49714108	49714108	+	Intron	DEL	G	-	-			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TSHZ2	128553	broad.mit.edu	37	20	51871355	51871355	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TSTD2	158427	broad.mit.edu	37	9	100367687	100367687	+	Intron	SNP	C	A	A			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179393173	179393173	+	Intron	SNP	A	G	G			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179403333	179403333	+	Missense_Mutation	SNP	C	T	T			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179437609	179437610	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179553413	179553413	+	Silent	SNP	G	T	T			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179593427	179593427	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TUFT1	7286	broad.mit.edu	37	1	151537169	151537169	+	Intron	SNP	A	T	T			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TXNDC6	347736	broad.mit.edu	37	3	138025330	138025330	+	Intron	DEL	A	-	-			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TYMS	7298	broad.mit.edu	37	18	669193	669193	+	Intron	SNP	C	A	A			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBAP2L	9898	broad.mit.edu	37	1	154224114	154224114	+	Missense_Mutation	SNP	A	G	G			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBE2Q1	55585	broad.mit.edu	37	1	154524207	154524207	+	Intron	SNP	C	G	G			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UNC80	285175	broad.mit.edu	37	2	210640825	210640825	+	Intron	SNP	T	C	C			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UNG	7374	broad.mit.edu	37	12	109537159	109537159	+	Intron	SNP	T	A	A			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UPF3B	65109	broad.mit.edu	37	X	118972013	118972013	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USH2A	7399	broad.mit.edu	37	1	216219863	216219863	+	Missense_Mutation	SNP	T	C	C			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USH2A	7399	broad.mit.edu	37	1	216462806	216462806	+	Intron	SNP	C	T	T			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP18	11274	broad.mit.edu	37	22	18640664	18640664	+	Intron	SNP	A	G	G			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP21	27005	broad.mit.edu	37	1	161132420	161132420	+	Missense_Mutation	SNP	T	C	C			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP29	57663	broad.mit.edu	37	19	57640629	57640629	+	Missense_Mutation	SNP	A	G	G			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UTP14A	10813	broad.mit.edu	37	X	129059189	129059189	+	Intron	SNP	G	T	T			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	38978119	38978119	+	IGR	SNP	G	T	T			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	38978182	38978182	+	IGR	SNP	C	A	A			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	3434998	3434998	+	IGR	SNP	C	A	A			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	4351260	4351260	+	IGR	SNP	G	C	C			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	47212968	47212968	+	IGR	SNP	G	A	A			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	51483770	51483770	+	IGR	SNP	G	C	C			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	55070254	55070255	+	IGR	DEL	CC	-	-			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	55783069	55783069	+	IGR	SNP	C	A	A			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	58133693	58133693	+	IGR	SNP	G	T	T			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	67700947	67700947	+	IGR	SNP	A	C	C			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	9682145	9682145	+	IGR	SNP	A	G	G			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	38595961	38595961	+	IGR	DEL	G	-	-			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	5141925	5141925	+	IGR	SNP	G	T	T	rs12312471		TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	80707508	80707508	+	IGR	SNP	T	C	C			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	21630790	21630790	+	IGR	SNP	G	A	A			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	22053553	22053553	+	IGR	SNP	C	G	G			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	44546776	44546776	+	IGR	SNP	A	G	G			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	90204398	90204398	+	IGR	SNP	C	A	A			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	20169832	20169832	+	IGR	SNP	A	G	G			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	23155437	23155437	+	IGR	SNP	C	G	G			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	33414072	33414072	+	IGR	SNP	G	A	A			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	34660309	34660309	+	IGR	SNP	C	G	G			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	19659349	19659349	+	IGR	SNP	C	T	T			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	33734557	33734557	+	IGR	SNP	C	A	A			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	33786681	33786681	+	IGR	SNP	C	A	A			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	48017049	48017049	+	IGR	SNP	G	T	T			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	61082138	61082138	+	IGR	SNP	G	T	T			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	14613495	14613495	+	IGR	SNP	C	T	T			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	15003338	15003338	+	IGR	SNP	G	A	A			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	22790825	22790826	+	IGR	DNP	CG	AA	AA			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	43780506	43780506	+	IGR	SNP	G	T	T			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	51262563	51262563	+	IGR	SNP	C	A	A			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	53294807	53294807	+	IGR	SNP	C	G	G			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	110242977	110242977	+	IGR	SNP	A	G	G			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	191115475	191115475	+	IGR	SNP	T	C	C			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	229706475	229706475	+	IGR	SNP	G	T	T			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	229840803	229840803	+	IGR	SNP	A	G	G			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	27527643	27527643	+	IGR	SNP	C	T	T			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	39176268	39176268	+	IGR	SNP	G	A	A			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	73570751	73570751	+	IGR	SNP	C	A	A			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	29873905	29873905	+	IGR	SNP	G	T	T			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	11181058	11181058	+	IGR	SNP	A	T	T			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	20617335	20617335	+	IGR	SNP	C	A	A			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	22	16341170	16341170	+	IGR	SNP	C	A	A			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	22	17414977	17414977	+	IGR	SNP	G	A	A			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	22	25084127	25084127	+	IGR	SNP	C	A	A			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	139659491	139659491	+	IGR	SNP	C	T	T			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	181803822	181803822	+	IGR	SNP	T	C	C			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	210045736	210045736	+	IGR	SNP	A	G	G	rs142702893	by1000genomes	TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	90291179	90291179	+	IGR	SNP	G	T	T			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	96068931	96068931	+	IGR	SNP	C	T	T			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	97926344	97926344	+	IGR	SNP	C	A	A			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	113377515	113377515	+	IGR	SNP	C	G	G			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	165577859	165577859	+	IGR	SNP	C	G	G			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	4078546	4078546	+	IGR	SNP	C	G	G			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	70115590	70115590	+	IGR	SNP	G	C	C			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	25910020	25910020	+	IGR	SNP	G	A	A			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	25910027	25910027	+	IGR	SNP	C	A	A			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	41586796	41586796	+	IGR	SNP	C	G	G			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	7290943	7290943	+	IGR	SNP	C	A	A			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	77081480	77081480	+	IGR	SNP	G	T	T			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	81614157	81614157	+	IGR	SNP	C	A	A			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	150298698	150298698	+	IGR	SNP	G	T	T			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	167342868	167342868	+	IGR	SNP	C	T	T			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	48116917	48116917	+	IGR	SNP	C	A	A			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	57841720	57841720	+	IGR	SNP	T	G	G			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	78497307	78497307	+	IGR	SNP	G	T	T			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	10491891	10491891	+	IGR	SNP	G	T	T			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	136399648	136399648	+	IGR	SNP	G	T	T			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	56636078	56636078	+	IGR	SNP	A	T	T			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	57217087	57217087	+	IGR	SNP	T	A	A			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	62916643	62916643	+	IGR	SNP	T	A	A			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	63032795	63032795	+	IGR	SNP	G	T	T			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	98083865	98083865	+	IGR	SNP	G	A	A			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	47884625	47884625	+	IGR	SNP	A	T	T			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	48033976	48033976	+	IGR	SNP	C	G	G			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	62115046	62115046	+	IGR	SNP	C	T	T			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	88801871	88801871	+	IGR	SNP	T	C	C			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	110678395	110678395	+	IGR	SNP	G	C	C			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	114937553	114937553	+	IGR	SNP	G	C	C			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	120003438	120003439	+	IGR	DNP	CC	TA	TA			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	124461159	124461159	+	IGR	SNP	G	T	T			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	127261156	127261156	+	IGR	SNP	G	T	T			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	134741141	134741141	+	IGR	SNP	G	A	A			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	134811738	134811738	+	IGR	SNP	G	T	T			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	22454329	22454329	+	IGR	SNP	T	A	A			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	3285803	3285803	+	IGR	SNP	C	A	A			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	38339152	38339152	+	IGR	SNP	G	T	T			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	41958154	41958154	+	IGR	SNP	C	A	A			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	49397082	49397082	+	IGR	SNP	A	T	T			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	49397090	49397090	+	IGR	SNP	G	T	T			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	65275929	65275929	+	IGR	SNP	C	G	G			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	72745778	72745778	+	IGR	SNP	G	T	T			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	7618870	7618870	+	IGR	SNP	C	A	A			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	97645512	97645512	+	IGR	SNP	G	A	A			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VGLL1	51442	broad.mit.edu	37	X	135631064	135631064	+	Silent	SNP	C	T	T			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VIM	7431	broad.mit.edu	37	10	17271973	17271973	+	Silent	SNP	C	T	T			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VPS13B	157680	broad.mit.edu	37	8	100245876	100245876	+	Intron	SNP	G	T	T			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VSIG4	11326	broad.mit.edu	37	X	65259825	65259825	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WAPAL	23063	broad.mit.edu	37	10	88221029	88221029	+	Missense_Mutation	SNP	T	A	A			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WARS2	10352	broad.mit.edu	37	1	119575683	119575683	+	Nonsense_Mutation	SNP	C	A	A			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WAS	7454	broad.mit.edu	37	X	48547174	48547174	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDFY3	23001	broad.mit.edu	37	4	85731005	85731005	+	Intron	SNP	C	T	T			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR17	116966	broad.mit.edu	37	4	177100788	177100788	+	3'UTR	SNP	G	T	T			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR44	54521	broad.mit.edu	37	X	117570726	117570726	+	Missense_Mutation	SNP	G	C	C			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR52	55779	broad.mit.edu	37	3	113118861	113118861	+	Intron	SNP	G	A	A			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR90	197335	broad.mit.edu	37	16	716315	716315	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XRCC4	7518	broad.mit.edu	37	5	82491599	82491599	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XRN2	22803	broad.mit.edu	37	20	21367491	21367491	+	Intron	SNP	G	C	C			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
YARS	8565	broad.mit.edu	37	1	33252384	33252384	+	Intron	SNP	T	C	C			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZADH2	284273	broad.mit.edu	37	18	72913607	72913607	+	Missense_Mutation	SNP	C	T	T			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZC3H3	23144	broad.mit.edu	37	8	144621365	144621365	+	Missense_Mutation	SNP	T	A	A			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZCWPW1	55063	broad.mit.edu	37	7	100013588	100013588	+	Intron	SNP	C	A	A			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZDHHC4	55146	broad.mit.edu	37	7	6628216	6628216	+	Intron	SNP	T	C	C			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZFHX4	79776	broad.mit.edu	37	8	77763422	77763422	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZFHX4	79776	broad.mit.edu	37	8	77764395	77764395	+	Silent	SNP	G	T	T			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZFP42	132625	broad.mit.edu	37	4	188923926	188923926	+	5'UTR	SNP	G	T	T			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZFYVE16	9765	broad.mit.edu	37	5	79735980	79735980	+	Intron	SNP	G	T	T			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZIC4	84107	broad.mit.edu	37	3	147108869	147108869	+	Missense_Mutation	SNP	T	C	C			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZIC4	84107	broad.mit.edu	37	3	147114295	147114295	+	Intron	SNP	C	G	G			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZMYND11	10771	broad.mit.edu	37	10	267423	267423	+	Intron	SNP	A	T	T			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF214	7761	broad.mit.edu	37	11	7024067	7024067	+	5'UTR	SNP	C	A	A			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF215	7762	broad.mit.edu	37	11	6977310	6977310	+	Nonsense_Mutation	SNP	C	T	T			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF407	55628	broad.mit.edu	37	18	72347733	72347733	+	Intron	SNP	C	T	T			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF418	147686	broad.mit.edu	37	19	58438312	58438312	+	Missense_Mutation	SNP	G	A	A			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF43	7594	broad.mit.edu	37	19	21992461	21992461	+	Silent	SNP	C	T	T	rs147543020		TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF449	203523	broad.mit.edu	37	X	134483291	134483291	+	Intron	SNP	A	T	T			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF536	9745	broad.mit.edu	37	19	31039889	31039889	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF568	374900	broad.mit.edu	37	19	37427558	37427558	+	Intron	SNP	C	G	G			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF573	126231	broad.mit.edu	37	19	38282693	38282693	+	Intron	SNP	G	T	T			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF592	9640	broad.mit.edu	37	15	85325992	85325992	+	Missense_Mutation	SNP	C	T	T			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF676	163223	broad.mit.edu	37	19	22379529	22379529	+	Translation_Start_Site	SNP	C	A	A			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF732	654254	broad.mit.edu	37	4	290078	290078	+	5'Flank	SNP	A	T	T			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF75D	7626	broad.mit.edu	37	X	134427710	134427710	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF772	400720	broad.mit.edu	37	19	57988721	57988722	+	5'UTR	INS	-	G	G			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF814	730051	broad.mit.edu	37	19	58379710	58379710	+	Intron	SNP	G	C	C			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF883	169834	broad.mit.edu	37	9	115759674	115759674	+	Missense_Mutation	SNP	C	T	T			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF99	7652	broad.mit.edu	37	19	22942366	22942366	+	Missense_Mutation	SNP	T	A	A			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNFX1	57169	broad.mit.edu	37	20	47892433	47892433	+	Intron	SNP	G	T	T			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNHIT6	54680	broad.mit.edu	37	1	86173255	86173255	+	Intron	SNP	T	C	C			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZSCAN1	284312	broad.mit.edu	37	19	58551771	58551771	+	Intron	SNP	G	T	T			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZW10	9183	broad.mit.edu	37	11	113644417	113644417	+	5'UTR	SNP	G	C	C			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	22989437	22989437	+	Intron	DEL	G	-	-			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	22472973	22472974	+	RNA	DNP	GG	TT	TT			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	31089401	31089401	+	5'Flank	SNP	G	A	A	rs144165696	by1000genomes	TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	32077295	32077295	+	5'Flank	SNP	A	G	G			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	74415364	74415364	+	Intron	SNP	T	A	A			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	12092325	12092325	+	5'Flank	SNP	G	A	A			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	89246701	89246701	+	Intron	SNP	T	A	A			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	89471900	89471900	+	Intron	SNP	G	T	T			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	89476207	89476207	+	Intron	SNP	G	T	T			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	90212167	90212167	+	RNA	SNP	C	G	G			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	91679032	91679032	+	5'Flank	SNP	A	G	G			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	180491207	180491207	+	Intron	SNP	C	A	A			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	24170649	24170649	+	Intron	DEL	C	-	-			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	86568096	86568096	+	5'Flank	SNP	G	C	C			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	48163159	48163159	+	Intron	SNP	C	T	T			TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
