Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	dataset	type	classification	start	end	gene	chr	ref_allele	tum_allele1	tum_allele2	context
LEPRE1	64175	broad.mit.edu	36	1	42993203	42993203	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-23-1031-01	TCGA-23-1031-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	42993203	42993203	LEPRE1	1	G	G	T	44
LRRC7	57554	broad.mit.edu	36	1	70274829	70274829	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-23-1031-01	TCGA-23-1031-10			G	C	G	G	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	Broad	Missense_Mutation	SNP	70274829	70274829	LRRC7	1	G	G	C	39
ASTN1	460	broad.mit.edu	36	1	175266704	175266704	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-23-1031-01	TCGA-23-1031-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	175266704	175266704	ASTN1	1	G	G	T	48
OBSCN	84033	broad.mit.edu	36	1	226576369	226576369	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-23-1031-01	TCGA-23-1031-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	226576369	226576369	OBSCN	1	C	C	A	22
HIST3H2A	92815	broad.mit.edu	36	1	226711851	226711851	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-23-1031-01	TCGA-23-1031-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	226711851	226711851	HIST3H2A	1	C	C	T	25
RYR2	6262	broad.mit.edu	36	1	236013917	236013917	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-23-1031-01	TCGA-23-1031-10			C	T	C	C	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	Broad	Silent	SNP	236013917	236013917	RYR2	1	C	C	T	31
OR2M2	391194	broad.mit.edu	36	1	246409927	246409927	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-23-1031-01	TCGA-23-1031-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	246409927	246409927	OR2M2	1	A	A	G	7
C10orf113	387638	broad.mit.edu	36	10	21475310	21475310	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-23-1031-01	TCGA-23-1031-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	21475310	21475310	C10orf113	10	C	C	G	17
ARID5B	84159	broad.mit.edu	36	10	63520721	63520721	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-23-1031-01	TCGA-23-1031-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	63520721	63520721	ARID5B	10	A	A	T	9
NLRP14	338323	broad.mit.edu	36	11	7027589	7027589	+	Silent	SNP	A	A	T	novel	Unknown	TCGA-23-1031-01	TCGA-23-1031-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	7027589	7027589	NLRP14	11	A	A	T	11
FNBP4	23360	broad.mit.edu	36	11	47712212	47712212	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-23-1031-01	TCGA-23-1031-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	47712212	47712212	FNBP4	11	A	A	C	2
BARX2	8538	broad.mit.edu	36	11	128812028	128812028	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-23-1031-01	TCGA-23-1031-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	128812028	128812028	BARX2	11	G	G	T	36
COPS7A	50813	broad.mit.edu	36	12	6708813	6708813	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-23-1031-01	TCGA-23-1031-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	6708813	6708813	COPS7A	12	A	A	G	14
CD163	9332	broad.mit.edu	36	12	7531354	7531354	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-23-1031-01	TCGA-23-1031-10			T	C	T	T	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	Broad	Missense_Mutation	SNP	7531354	7531354	CD163	12	T	T	C	64
DDX47	51202	broad.mit.edu	36	12	12865868	12865868	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-23-1031-01	TCGA-23-1031-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	12865868	12865868	DDX47	12	G	G	T	44
C12orf40	283461	broad.mit.edu	36	12	38363090	38363090	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-23-1031-01	TCGA-23-1031-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	38363090	38363090	C12orf40	12	G	G	T	36
C12orf40	283461	broad.mit.edu	36	12	38401072	38401072	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-23-1031-01	TCGA-23-1031-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	38401072	38401072	C12orf40	12	T	T	G	59
KRT79	338785	broad.mit.edu	36	12	51513997	51513997	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-23-1031-01	TCGA-23-1031-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	51513997	51513997	KRT79	12	A	A	T	5
LRRIQ1	84125	broad.mit.edu	36	12	84024434	84024434	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-23-1031-01	TCGA-23-1031-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	84024434	84024434	LRRIQ1	12	T	T	C	56
RPH3A	22895	broad.mit.edu	36	12	111770015	111770015	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-23-1031-01	TCGA-23-1031-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	111770015	111770015	RPH3A	12	A	A	T	11
CIT	11113	broad.mit.edu	36	12	118635783	118635783	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-23-1031-01	TCGA-23-1031-10			C	T	C	C	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	Broad	Missense_Mutation	SNP	118635783	118635783	CIT	12	C	C	T	23
DIABLO	56616	broad.mit.edu	36	12	121259056	121259056	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-23-1031-01	TCGA-23-1031-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	121259056	121259056	DIABLO	12	G	G	T	44
PABPC3	5042	broad.mit.edu	36	13	24569197	24569197	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-23-1031-01	TCGA-23-1031-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	24569197	24569197	PABPC3	13	G	G	C	41
GPR12	2835	broad.mit.edu	36	13	26231719	26231719	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-23-1031-01	TCGA-23-1031-10			T	C	T	T	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	Broad	Silent	SNP	26231719	26231719	GPR12	13	T	T	C	61
ESD	2098	broad.mit.edu	36	13	46259170	46259170	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-23-1031-01	TCGA-23-1031-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	46259170	46259170	ESD	13	C	C	A	17
KLF5	688	broad.mit.edu	36	13	72534581	72534581	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-23-1031-01	TCGA-23-1031-10			G	T	G	G	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	Broad	Missense_Mutation	SNP	72534581	72534581	KLF5	13	G	G	T	46
TEP1	7011	broad.mit.edu	36	14	19921788	19921788	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-23-1031-01	TCGA-23-1031-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	19921788	19921788	TEP1	14	G	G	T	33
PNN	5411	broad.mit.edu	36	14	38719972	38719972	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-23-1031-01	TCGA-23-1031-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	38719972	38719972	PNN	14	T	T	A	49
NAA30	122830	broad.mit.edu	36	14	56927998	56927998	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-23-1031-01	TCGA-23-1031-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	56927998	56927998	NAA30	14	C	C	A	22
KIAA0586	9786	broad.mit.edu	36	14	58008728	58008728	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-23-1031-01	TCGA-23-1031-10			A	G	A	A	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	Broad	Missense_Mutation	SNP	58008728	58008728	KIAA0586	14	A	A	G	12
GPR176	11245	broad.mit.edu	36	15	37880903	37880903	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-23-1031-01	TCGA-23-1031-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	37880903	37880903	GPR176	15	G	G	T	44
TYRO3	7301	broad.mit.edu	36	15	39646884	39646884	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-23-1031-01	TCGA-23-1031-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	39646884	39646884	TYRO3	15	C	C	G	28
EPB42	2038	broad.mit.edu	36	15	41286022	41286022	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-23-1031-01	TCGA-23-1031-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	41286022	41286022	EPB42	15	G	G	C	47
SPG11	80208	broad.mit.edu	36	15	42740010	42740010	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-23-1031-01	TCGA-23-1031-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	42740010	42740010	SPG11	15	A	A	G	13
SLC28A2	9153	broad.mit.edu	36	15	43345143	43345143	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-23-1031-01	TCGA-23-1031-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	43345143	43345143	SLC28A2	15	T	T	C	57
AQP9	366	broad.mit.edu	36	15	56252647	56252647	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-23-1031-01	TCGA-23-1031-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	56252647	56252647	AQP9	15	G	G	C	36
CLDN6	9074	broad.mit.edu	36	16	3005621	3005621	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-23-1031-01	TCGA-23-1031-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	3005621	3005621	CLDN6	16	G	G	C	43
ADCY9	115	broad.mit.edu	36	16	3956250	3956250	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-23-1031-01	TCGA-23-1031-10			T	C	T	T	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	Broad	Missense_Mutation	SNP	3956250	3956250	ADCY9	16	T	T	C	50
ZC3H7A	29066	broad.mit.edu	36	16	11768901	11768901	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-23-1031-01	TCGA-23-1031-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	11768901	11768901	ZC3H7A	16	G	G	C	48
GDE1	51573	broad.mit.edu	36	16	19435914	19435914	+	Silent	SNP	A	A	T	novel	Unknown	TCGA-23-1031-01	TCGA-23-1031-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	19435914	19435914	GDE1	16	A	A	T	7
DNAH3	55567	broad.mit.edu	36	16	20938586	20938586	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-23-1031-01	TCGA-23-1031-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	20938586	20938586	DNAH3	16	C	C	G	30
CNOT1	23019	broad.mit.edu	36	16	57136774	57136774	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-23-1031-01	TCGA-23-1031-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	57136774	57136774	CNOT1	16	T	T	G	62
DLG4	1742	broad.mit.edu	36	17	7037754	7037754	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-23-1031-01	TCGA-23-1031-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	7037754	7037754	DLG4	17	C	C	T	31
TEKT3	64518	broad.mit.edu	36	17	15175140	15175140	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-23-1031-01	TCGA-23-1031-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	15175140	15175140	TEKT3	17	T	T	A	54
C17orf39	79018	broad.mit.edu	36	17	17902990	17902990	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-23-1031-01	TCGA-23-1031-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	17902990	17902990	C17orf39	17	C	C	T	19
RHOT1	55288	broad.mit.edu	36	17	27553952	27553952	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-23-1031-01	TCGA-23-1031-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	27553952	27553952	RHOT1	17	G	G	C	48
GGNBP2	79893	broad.mit.edu	36	17	32017633	32017633	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-23-1031-01	TCGA-23-1031-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	32017633	32017633	GGNBP2	17	G	G	C	33
CCR10	2826	broad.mit.edu	36	17	38086132	38086132	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-23-1031-01	TCGA-23-1031-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	38086132	38086132	CCR10	17	T	T	C	56
KIF2B	84643	broad.mit.edu	36	17	49256683	49256683	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-23-1031-01	TCGA-23-1031-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	49256683	49256683	KIF2B	17	G	G	C	33
RNF213	57674	broad.mit.edu	36	17	75934213	75934213	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-23-1031-01	TCGA-23-1031-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	75934213	75934213	RNF213	17	A	A	C	16
CEP192	55125	broad.mit.edu	36	18	13104130	13104130	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-23-1031-01	TCGA-23-1031-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	13104130	13104130	CEP192	18	G	G	C	34
DSG3	1830	broad.mit.edu	36	18	27300615	27300615	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-23-1031-01	TCGA-23-1031-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	27300615	27300615	DSG3	18	C	C	T	23
RFX2	5990	broad.mit.edu	36	19	5953737	5953737	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-23-1031-01	TCGA-23-1031-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	5953737	5953737	RFX2	19	C	C	G	19
CTXN1	404217	broad.mit.edu	36	19	7896283	7896283	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-23-1031-01	TCGA-23-1031-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	7896283	7896283	CTXN1	19	C	C	G	25
MUC16	94025	broad.mit.edu	36	19	8935946	8935946	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-23-1031-01	TCGA-23-1031-10			G	C	G	G	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	Broad	Missense_Mutation	SNP	8935946	8935946	MUC16	19	G	G	C	34
PRKCSH	5589	broad.mit.edu	36	19	11408013	11408013	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-23-1031-01	TCGA-23-1031-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	11408013	11408013	PRKCSH	19	C	C	T	29
PGLYRP2	114770	broad.mit.edu	36	19	15440505	15440505	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-23-1031-01	TCGA-23-1031-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	15440505	15440505	PGLYRP2	19	G	G	T	47
C19orf55	148137	broad.mit.edu	36	19	40947603	40947603	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-23-1031-01	TCGA-23-1031-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	40947603	40947603	C19orf55	19	C	C	T	17
HKR1	284459	broad.mit.edu	36	19	42544976	42544976	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-23-1031-01	TCGA-23-1031-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	42544976	42544976	HKR1	19	C	C	T	30
CATSPERG	57828	broad.mit.edu	36	19	43553175	43553175	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-23-1031-01	TCGA-23-1031-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	43553175	43553175	CATSPERG	19	C	C	T	32
CALM3	808	broad.mit.edu	36	19	51804235	51804235	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-23-1031-01	TCGA-23-1031-10			G	C	G	G	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	Broad	Missense_Mutation	SNP	51804235	51804235	CALM3	19	G	G	C	45
LOC391343	391343	broad.mit.edu	36	2	895896	895896	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-23-1031-01	TCGA-23-1031-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	895896	895896	LOC391343	2	T	T	A	59
BIRC6	57448	broad.mit.edu	36	2	32543691	32543691	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-23-1031-01	TCGA-23-1031-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	32543691	32543691	BIRC6	2	C	C	G	29
PUS10	150962	broad.mit.edu	36	2	61033722	61033722	+	Nonsense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-23-1031-01	TCGA-23-1031-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Nonsense_Mutation	SNP	61033722	61033722	PUS10	2	C	C	A	32
ADD2	119	broad.mit.edu	36	2	70753936	70753936	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-23-1031-01	TCGA-23-1031-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	70753936	70753936	ADD2	2	C	C	G	18
CNTNAP5	129684	broad.mit.edu	36	2	125246891	125246891	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-23-1031-01	TCGA-23-1031-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	125246891	125246891	CNTNAP5	2	T	T	C	59
MYO7B	4648	broad.mit.edu	36	2	128101356	128101356	+	Splice_Site_SNP	SNP	G	G	T	novel	Unknown	TCGA-23-1031-01	TCGA-23-1031-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Splice_Site_SNP	SNP	128101356	128101356	MYO7B	2	G	G	T	44
MFSD6	54842	broad.mit.edu	36	2	191009653	191009653	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-23-1031-01	TCGA-23-1031-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	191009653	191009653	MFSD6	2	C	C	G	21
CHPF	79586	broad.mit.edu	36	2	220113991	220113992	+	Missense_Mutation	DNP	GG	GG	AT	novel	Unknown	TCGA-23-1031-01	TCGA-23-1031-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	DNP	220113991	220113992	CHPF	2	GG	GG	AT	35
PTMA	5757	broad.mit.edu	36	2	232281666	232281666	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-23-1031-01	TCGA-23-1031-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	232281666	232281666	PTMA	2	A	A	G	7
INPP5D	3635	broad.mit.edu	36	2	233695067	233695067	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-23-1031-01	TCGA-23-1031-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	233695067	233695067	INPP5D	2	G	G	A	37
UGT1A1	54658	broad.mit.edu	36	2	234334195	234334195	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-23-1031-01	TCGA-23-1031-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	234334195	234334195	UGT1A1	2	C	C	T	20
FARP2	9855	broad.mit.edu	36	2	242044963	242044964	+	Silent	DNP	AG	AG	TC	novel	Unknown	TCGA-23-1031-01	TCGA-23-1031-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	DNP	242044963	242044964	FARP2	2	AG	AG	TC	7
DPM1	8813	broad.mit.edu	36	20	49008446	49008446	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-23-1031-01	TCGA-23-1031-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	49008446	49008446	DPM1	20	G	G	T	37
CTCFL	140690	broad.mit.edu	36	20	55511966	55511966	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-23-1031-01	TCGA-23-1031-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	55511966	55511966	CTCFL	20	A	A	G	12
OSBP2	23762	broad.mit.edu	36	22	29421221	29421221	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-23-1031-01	TCGA-23-1031-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	29421221	29421221	OSBP2	22	G	G	C	33
TMPRSS6	164656	broad.mit.edu	36	22	35796501	35796501	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-23-1031-01	TCGA-23-1031-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	35796501	35796501	TMPRSS6	22	T	T	G	50
SAMM50	25813	broad.mit.edu	36	22	42703319	42703319	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-23-1031-01	TCGA-23-1031-10			G	A	G	G	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	Broad	Missense_Mutation	SNP	42703319	42703319	SAMM50	22	G	G	A	33
LHFPL4	375323	broad.mit.edu	36	3	9522805	9522805	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-23-1031-01	TCGA-23-1031-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	9522805	9522805	LHFPL4	3	C	C	T	23
ATP2B2	491	broad.mit.edu	36	3	10466053	10466053	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-23-1031-01	TCGA-23-1031-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	10466053	10466053	ATP2B2	3	G	G	A	38
AZI2	64343	broad.mit.edu	36	3	28355078	28355078	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-23-1031-01	TCGA-23-1031-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	28355078	28355078	AZI2	3	G	G	A	39
NPHP3	27031	broad.mit.edu	36	3	133916620	133916620	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-23-1031-01	TCGA-23-1031-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	133916620	133916620	NPHP3	3	T	T	A	56
TSC22D2	9819	broad.mit.edu	36	3	151610420	151610420	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-23-1031-01	TCGA-23-1031-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	151610420	151610420	TSC22D2	3	C	C	G	30
MUC4	4585	broad.mit.edu	36	3	197000647	197000647	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-23-1031-01	TCGA-23-1031-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	197000647	197000647	MUC4	3	G	G	C	47
UGT2B10	7365	broad.mit.edu	36	4	69716716	69716716	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-23-1031-01	TCGA-23-1031-10			T	C	T	T	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	Broad	Silent	SNP	69716716	69716716	UGT2B10	4	T	T	C	64
PPP3CA	5530	broad.mit.edu	36	4	102223386	102223386	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-23-1031-01	TCGA-23-1031-10			G	C	G	G	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	Broad	Silent	SNP	102223386	102223386	PPP3CA	4	G	G	C	43
PCDHGA12	26025	broad.mit.edu	36	5	140792798	140792798	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-23-1031-01	TCGA-23-1031-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	140792798	140792798	PCDHGA12	5	C	C	T	31
HIST1H3J	8356	broad.mit.edu	36	6	27966523	27966523	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-23-1031-01	TCGA-23-1031-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	27966523	27966523	HIST1H3J	6	G	G	C	46
RPP21	79897	broad.mit.edu	36	6	30422273	30422273	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-23-1031-01	TCGA-23-1031-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	30422273	30422273	RPP21	6	C	C	A	32
XPO5	57510	broad.mit.edu	36	6	43600256	43600256	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-23-1031-01	TCGA-23-1031-10			G	A	G	G	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	Broad	Silent	SNP	43600256	43600256	XPO5	6	G	G	A	35
EYS	346007	broad.mit.edu	36	6	66171839	66171839	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-23-1031-01	TCGA-23-1031-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	66171839	66171839	EYS	6	C	C	G	20
IMPG1	3617	broad.mit.edu	36	6	76717379	76717379	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-23-1031-01	TCGA-23-1031-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	76717379	76717379	IMPG1	6	G	G	A	43
ELOVL4	6785	broad.mit.edu	36	6	80688095	80688095	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-23-1031-01	TCGA-23-1031-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	80688095	80688095	ELOVL4	6	C	C	A	18
HTR1E	3354	broad.mit.edu	36	6	87782042	87782042	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-23-1031-01	TCGA-23-1031-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	87782042	87782042	HTR1E	6	G	G	C	47
TIAM2	26230	broad.mit.edu	36	6	155500014	155500014	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-23-1031-01	TCGA-23-1031-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	155500014	155500014	TIAM2	6	C	C	A	21
CPVL	54504	broad.mit.edu	36	7	29036851	29036851	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-23-1031-01	TCGA-23-1031-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	29036851	29036851	CPVL	7	G	G	C	48
UPP1	7378	broad.mit.edu	36	7	48114399	48114399	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-23-1031-01	TCGA-23-1031-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	48114399	48114399	UPP1	7	C	C	T	31
KIAA1324L	222223	broad.mit.edu	36	7	86379340	86379340	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-23-1031-01	TCGA-23-1031-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	86379340	86379340	KIAA1324L	7	C	C	T	20
CTTNBP2	83992	broad.mit.edu	36	7	117173346	117173346	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-23-1031-01	TCGA-23-1031-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	117173346	117173346	CTTNBP2	7	C	C	G	28
IQUB	154865	broad.mit.edu	36	7	122939369	122939369	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-23-1031-01	TCGA-23-1031-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	122939369	122939369	IQUB	7	C	C	A	20
TTC26	79989	broad.mit.edu	36	7	138482481	138482481	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-23-1031-01	TCGA-23-1031-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	138482481	138482481	TTC26	7	C	C	T	29
DUSP4	1846	broad.mit.edu	36	8	29258942	29258942	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-23-1031-01	TCGA-23-1031-10			G	A	G	G	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	Broad	Silent	SNP	29258942	29258942	DUSP4	8	G	G	A	40
ZFPM2	23414	broad.mit.edu	36	8	106882755	106882755	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-23-1031-01	TCGA-23-1031-10			C	G	C	C	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	Broad	Missense_Mutation	SNP	106882755	106882755	ZFPM2	8	C	C	G	26
SLA	6503	broad.mit.edu	36	8	134141616	134141616	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-23-1031-01	TCGA-23-1031-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	134141616	134141616	SLA	8	G	G	A	45
CNTFR	1271	broad.mit.edu	36	9	34554662	34554662	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-23-1031-01	TCGA-23-1031-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	34554662	34554662	CNTFR	9	C	C	G	26
TLN1	7094	broad.mit.edu	36	9	35689450	35689450	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-23-1031-01	TCGA-23-1031-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	35689450	35689450	TLN1	9	C	C	A	32
SMC5	23137	broad.mit.edu	36	9	72128856	72128856	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-23-1031-01	TCGA-23-1031-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	72128856	72128856	SMC5	9	T	T	C	50
RGS3	5998	broad.mit.edu	36	9	115264277	115264277	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-23-1031-01	TCGA-23-1031-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	115264277	115264277	RGS3	9	C	C	T	29
FAM48B2	170067	broad.mit.edu	36	X	24239593	24239593	+	Silent	SNP	A	A	C	novel	Unknown	TCGA-23-1031-01	TCGA-23-1031-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	24239593	24239593	FAM48B2	23	A	A	C	1
ZCCHC5	203430	broad.mit.edu	36	X	77799795	77799795	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-23-1031-01	TCGA-23-1031-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	77799795	77799795	ZCCHC5	23	C	C	G	20
RPL10	6134	broad.mit.edu	36	X	153282294	153282294	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-23-1031-01	TCGA-23-1031-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	153282294	153282294	RPL10	23	A	A	C	8
TP53	7157	broad.mit.edu	36	17	7518239	7518247	+	In_Frame_Del	DEL	GTGATGATG	GTGATGATG	-	novel	Unknown	TCGA-23-1031-01	TCGA-23-1031-10							Unknown	Unknown	Unknown	Phase_I	Capture	---			Illumina GAIIx	Broad	In_Frame_Del	DEL	7518239	7518247	TP53	17	GTGATGATG	GTGATGATG	-	48
PSAT1	29968	broad.mit.edu	36	9	80132916	80132922	+	Frame_Shift_Del	DEL	AGGGCAT	-	AGGGCAT	novel	Unknown	TCGA-23-1031-01	TCGA-23-1031-10			-	AGGGCAT	AGGGCAT	AGGGCAT	Unknown	Valid	Somatic	Phase_I	Capture				Illumina GAIIx	Broad	Frame_Shift_Del	DEL	80132916	80132922	PSAT1	9	AGGGCAT	-	AGGGCAT	3
