Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_alt_allele	validation_method	validation_status	validation_tumor_sample	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
POLRMT	5442	broad.mit.edu	37	19	619645	619645	+	Missense_Mutation	SNP	G	G	A			TCGA-HZ-7924-01A-11D-2154-08	TCGA-HZ-7924-10A-01D-2154-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c4c1f4b1-d515-4a44-a975-38fa092bca24	cbb96d11-05d7-46a3-ace3-0b6010d95fb2	g.chr19:619645G>A	ENST00000588649.2	-	13	3091	c.3007C>T	c.(3007-3009)Cgc>Tgc	p.R1003C		NM_005035.3	NP_005026.3	O00411	RPOM_HUMAN	polymerase (RNA) mitochondrial (DNA directed)	1003	Mediates interaction with TEFM.				transcription initiation from mitochondrial promoter	mitochondrial nucleoid	DNA binding|DNA-directed RNA polymerase activity|protein binding			cervix(2)|endometrium(3)|large_intestine(1)|lung(9)|ovary(1)|pancreas(2)|prostate(1)|stomach(1)	20		all_epithelial(18;2.78e-22)|Acute lymphoblastic leukemia(61;2.53e-14)|all_hematologic(61;8.18e-10)|Lung NSC(49;3.55e-06)|all_lung(49;5.41e-06)|Breast(49;4.08e-05)|Hepatocellular(1079;0.137)|Renal(1328;0.228)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		CCGCCATAGCGCGTGACCCCG	0.647000													20	555					0	0	1	0	0
OAS2	0	broad.mit.edu	37	12	113425154	113425154	+	Missense_Mutation	SNP	C	C	G	rs1293767	by1000genomes	TCGA-HZ-7924-01A-11D-2154-08	TCGA-HZ-7924-10A-01D-2154-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c4c1f4b1-d515-4a44-a975-38fa092bca24	cbb96d11-05d7-46a3-ace3-0b6010d95fb2	g.chr12:113425154C>G	ENST00000449768.2	+	2	616	c.489C>G	c.(487-489)agC>agG	p.S163R	RP1-71H24.1_ENST00000552784.1_RNA|OAS2_ENST00000392583.2_Intron|OAS2_ENST00000342315.4_Intron	NM_001032731.1	NP_001027903.1	P29728	OAS2_HUMAN	2'-5'-oligoadenylate synthetase 2, 69/71kDa	0	OAS domain 1.				interferon-gamma-mediated signaling pathway|nucleobase, nucleoside, nucleotide and nucleic acid metabolic process|type I interferon-mediated signaling pathway	endoplasmic reticulum|membrane|microsome|mitochondrion|nucleus	ATP binding|nucleotidyltransferase activity|RNA binding			NS(1)|breast(2)|endometrium(4)|large_intestine(7)|lung(8)|ovary(1)|prostate(1)|skin(3)|upper_aerodigestive_tract(1)	28						GCCAAAGAAGCGGGTGCCAGA	0.493000													6	124					0	0	1	0	0
GOLGA6L5	0	broad.mit.edu	37	15	85053142	85053142	+	RNA	SNP	C	C	T			TCGA-HZ-7924-01A-11D-2154-08	TCGA-HZ-7924-10A-01D-2154-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c4c1f4b1-d515-4a44-a975-38fa092bca24	cbb96d11-05d7-46a3-ace3-0b6010d95fb2	g.chr15:85053142C>T	ENST00000414190.2	-	0	310					NR_003246.2																						TTTTTCAATTCCTTGACCCGC	0.413000													13	75					0	0	1	0	0
MST1L	0	broad.mit.edu	37	1	17085189	17085189	+	RNA	SNP	A	A	G			TCGA-HZ-7924-01A-11D-2154-08	TCGA-HZ-7924-10A-01D-2154-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c4c1f4b1-d515-4a44-a975-38fa092bca24	cbb96d11-05d7-46a3-ace3-0b6010d95fb2	g.chr1:17085189A>G	ENST00000455405.2	-	0	87																		p.S428P(1)									TCCAGGATTGATGGCGGCTGG	0.572000													20	273					0	0	1	0	0
POM121L9P	0	broad.mit.edu	37	22	24659578	24659578	+	RNA	SNP	A	A	G			TCGA-HZ-7924-01A-11D-2154-08	TCGA-HZ-7924-10A-01D-2154-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c4c1f4b1-d515-4a44-a975-38fa092bca24	cbb96d11-05d7-46a3-ace3-0b6010d95fb2	g.chr22:24659578A>G	ENST00000414583.2	+	0	3103					NR_003714.1																						TGCGCAGGCCAACACTCACTG	0.617000													9	121					0	0	1	0	0
TPTE2P6	0	broad.mit.edu	37	13	25161397	25161397	+	RNA	SNP	C	C	G	rs3874227	by1000genomes	TCGA-HZ-7924-01A-11D-2154-08	TCGA-HZ-7924-10A-01D-2154-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c4c1f4b1-d515-4a44-a975-38fa092bca24	cbb96d11-05d7-46a3-ace3-0b6010d95fb2	g.chr13:25161397C>G	ENST00000453498.1	+	0	921																											TGAAACATCTCTACAACTGGA	0.343000													21	241					0	0	1	0	0
TSPAN10	83882	broad.mit.edu	37	17	79609410	79609410	+	RNA	SNP	G	G	T	rs7406219	by1000genomes	TCGA-HZ-7924-01A-11D-2154-08	TCGA-HZ-7924-10A-01D-2154-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c4c1f4b1-d515-4a44-a975-38fa092bca24	cbb96d11-05d7-46a3-ace3-0b6010d95fb2	g.chr17:79609410G>T	ENST00000328585.4	+	0	62					NM_031945.3	NP_114151.3	Q9H1Z9	TSN10_HUMAN	tetraspanin 10							integral to membrane				ovary(1)	1	all_neural(118;0.0878)|all_lung(278;0.175)|Lung NSC(278;0.192)|Melanoma(429;0.242)		BRCA - Breast invasive adenocarcinoma(99;0.0101)|OV - Ovarian serous cystadenocarcinoma(97;0.0739)			CGGCGCCTGTGCTGGGGGCTT	0.657000													12	292					9.31168e-06	9.31168e-06	1	1	0
HRCT1	646962	broad.mit.edu	37	9	35906559	35906559	+	Missense_Mutation	SNP	A	A	C			TCGA-HZ-7924-01A-11D-2154-08	TCGA-HZ-7924-10A-01D-2154-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c4c1f4b1-d515-4a44-a975-38fa092bca24	cbb96d11-05d7-46a3-ace3-0b6010d95fb2	g.chr9:35906559A>C	ENST00000354323.2	+	1	371	c.275A>C	c.(274-276)cAc>cCc	p.H92P		NM_001039792.1	NP_001034881.1	Q6UXD1	HRCT1_HUMAN	histidine rich carboxyl terminus 1	92	His-rich.					integral to membrane		p.H92P(1)		NS(1)|haematopoietic_and_lymphoid_tissue(1)|lung(1)|prostate(1)	4						caccaccaccacccccgccac	0.682000													16	49					0	0	1	0	0
PHF13	148479	broad.mit.edu	37	1	6680069	6680071	+	In_Frame_Del	DEL	GAA	GAA	-			TCGA-HZ-7924-01A-11D-2154-08	TCGA-HZ-7924-10A-01D-2154-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c4c1f4b1-d515-4a44-a975-38fa092bca24	cbb96d11-05d7-46a3-ace3-0b6010d95fb2	g.chr1:6680069_6680071delGAA	ENST00000377648.4	+	3	730_732	c.348_350delGAA	c.(346-351)ctg>ct	p.LK116del	PHF13_ENST00000495385.1_Intron	NM_153812.2	NP_722519.2	Q86YI8	PHF13_HUMAN	PHD finger protein 13	116					cell division|chromatin modification|mitotic chromosome condensation	nucleoplasm	chromatin binding|methylated histone residue binding|zinc ion binding			endometrium(3)|large_intestine(1)|lung(3)	7	Ovarian(185;0.0212)|all_lung(157;0.154)	all_cancers(23;1.46e-33)|all_epithelial(116;9.26e-22)|all_lung(118;7.57e-07)|Lung NSC(185;4.26e-06)|Breast(487;0.000353)|Renal(390;0.0007)|Colorectal(325;0.00104)|Hepatocellular(190;0.00308)|Myeloproliferative disorder(586;0.0255)|Ovarian(437;0.0443)		Colorectal(212;1.19e-07)|COAD - Colon adenocarcinoma(227;1.3e-05)|Kidney(185;4.88e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000501)|KIRC - Kidney renal clear cell carcinoma(229;0.000871)|STAD - Stomach adenocarcinoma(132;0.0165)|READ - Rectum adenocarcinoma(331;0.0642)		cggacaagctgaagaagaagaag	0.576													11	405	---	---	---	---					
VAMP3	9341	broad.mit.edu	37	1	7838212	7838214	+	In_Frame_Del	DEL	TCA	TCA	-			TCGA-HZ-7924-01A-11D-2154-08	TCGA-HZ-7924-10A-01D-2154-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c4c1f4b1-d515-4a44-a975-38fa092bca24	cbb96d11-05d7-46a3-ace3-0b6010d95fb2	g.chr1:7838212_7838214delTCA	ENST00000054666.6	+	4	381_383	c.266_268delTCA	c.(265-270)ttc>t	p.FI89del	VAMP3_ENST00000470357.1_In_Frame_Del_p.FI61del	NM_004781.3	NP_004772.1	Q15836	VAMP3_HUMAN	vesicle-associated membrane protein 3	89					cellular membrane fusion|positive regulation of receptor recycling|protein complex assembly|protein transport|retrograde transport, endosome to Golgi|substrate adhesion-dependent cell spreading|vesicle docking involved in exocytosis	cell junction|clathrin-coated vesicle|integral to membrane|recycling endosome|synapse|synaptosome	protein binding			breast(1)|endometrium(1)|haematopoietic_and_lymphoid_tissue(1)|large_intestine(3)	6	Ovarian(185;0.0634)|all_lung(157;0.178)	all_epithelial(116;9.35e-21)|all_lung(118;7.57e-07)|Lung NSC(185;4.52e-06)|Renal(390;0.000147)|Breast(487;0.00086)|Colorectal(325;0.000959)|Hepatocellular(190;0.00825)|Ovarian(437;0.0253)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|all cancers(8;6.33e-69)|GBM - Glioblastoma multiforme(8;2.07e-34)|Colorectal(212;1.36e-07)|COAD - Colon adenocarcinoma(227;1.38e-05)|Kidney(185;4.89e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000805)|KIRC - Kidney renal clear cell carcinoma(229;0.000917)|STAD - Stomach adenocarcinoma(132;0.000985)|READ - Rectum adenocarcinoma(331;0.0642)		CTGGTTATCTTCATCATCATCAT	0.365													7	1070	---	---	---	---					
AADACL3	126767	broad.mit.edu	37	1	12785492	12785493	+	Frame_Shift_Ins	INS	-	-	T			TCGA-HZ-7924-01A-11D-2154-08	TCGA-HZ-7924-10A-01D-2154-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c4c1f4b1-d515-4a44-a975-38fa092bca24	cbb96d11-05d7-46a3-ace3-0b6010d95fb2	g.chr1:12785492_12785493insT	ENST00000332530.3	+	3	598_599	c.372_373insT	c.(370-375)tagtttfs	p.*F124fs	AADACL3_ENST00000359318.5_Frame_Shift_Ins_p.*F194fs	NM_001103169.1	NP_001096639.1	Q5VUY0	ADCL3_HUMAN	arylacetamide deacetylase-like 3	194							hydrolase activity			breast(1)|kidney(1)|large_intestine(2)|lung(8)|ovary(1)|prostate(1)|skin(1)	15	Ovarian(185;0.249)	Lung NSC(185;8.27e-05)|all_lung(284;9.47e-05)|Renal(390;0.000147)|Colorectal(325;0.000583)|Breast(348;0.000596)|Ovarian(437;0.00965)|Hepatocellular(190;0.0245)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;6.13e-06)|COAD - Colon adenocarcinoma(227;0.000274)|BRCA - Breast invasive adenocarcinoma(304;0.000311)|Kidney(185;0.00217)|KIRC - Kidney renal clear cell carcinoma(229;0.00579)|STAD - Stomach adenocarcinoma(313;0.00743)|READ - Rectum adenocarcinoma(331;0.0649)		TCATCTGCTACTGTTTTTTTCA	0.455													11	1139	---	---	---	---					
EIF4G3	8672	broad.mit.edu	37	1	21226332	21226332	+	Frame_Shift_Del	DEL	T	T	-			TCGA-HZ-7924-01A-11D-2154-08	TCGA-HZ-7924-10A-01D-2154-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c4c1f4b1-d515-4a44-a975-38fa092bca24	cbb96d11-05d7-46a3-ace3-0b6010d95fb2	g.chr1:21226332delT	ENST00000602326.1	-	14	2290	c.1707delA	c.(1705-1707)aafs	p.K569fs	EIF4G3_ENST00000374933.3_5'UTR|EIF4G3_ENST00000374935.3_Frame_Shift_Del_p.K283fs|EIF4G3_ENST00000544689.1_Frame_Shift_Del_p.K106fs|EIF4G3_ENST00000374937.3_Frame_Shift_Del_p.K569fs|EIF4G3_ENST00000536266.1_Frame_Shift_Del_p.K167fs|EIF4G3_ENST00000264211.8_Frame_Shift_Del_p.K563fs|EIF4G3_ENST00000537738.1_Frame_Shift_Del_p.K16fs|EIF4G3_ENST00000400422.1_Frame_Shift_Del_p.K563fs	NM_001198802.1	NP_001185731.1	O43432	IF4G3_HUMAN	eukaryotic translation initiation factor 4 gamma, 3	563					interspecies interaction between organisms|regulation of translational initiation|RNA metabolic process	eukaryotic translation initiation factor 4F complex	protein binding|RNA cap binding|translation initiation factor activity			endometrium(12)|haematopoietic_and_lymphoid_tissue(1)|kidney(7)|large_intestine(18)|lung(20)|ovary(1)|prostate(4)|skin(3)|stomach(1)|urinary_tract(3)	70		all_lung(284;2.61e-06)|Lung NSC(340;2.81e-06)|Colorectal(325;3.46e-05)|Renal(390;9.67e-05)|Breast(348;0.00149)|Ovarian(437;0.00338)|Myeloproliferative disorder(586;0.0256)		UCEC - Uterine corpus endometrioid carcinoma (279;0.023)|COAD - Colon adenocarcinoma(152;5.42e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000327)|GBM - Glioblastoma multiforme(114;0.000696)|Kidney(64;0.0018)|STAD - Stomach adenocarcinoma(196;0.00644)|KIRC - Kidney renal clear cell carcinoma(64;0.0185)|READ - Rectum adenocarcinoma(331;0.124)|Lung(427;0.191)		CAGCTTTCACTTTTTTTAGGT	0.433													9	1336	---	---	---	---					
PHACTR4	65979	broad.mit.edu	37	1	28800272	28800273	+	Frame_Shift_Ins	INS	-	-	C			TCGA-HZ-7924-01A-11D-2154-08	TCGA-HZ-7924-10A-01D-2154-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c4c1f4b1-d515-4a44-a975-38fa092bca24	cbb96d11-05d7-46a3-ace3-0b6010d95fb2	g.chr1:28800272_28800273insC	ENST00000373839.3	+	7	1291_1292	c.1030_1031insC	c.(1030-1032)cccfs	p.P344fs	PHACTR4_ENST00000493669.1_3'UTR|PHACTR4_ENST00000373836.3_Frame_Shift_Ins_p.P354fs	NM_001048183.1	NP_001041648.1	Q8IZ21	PHAR4_HUMAN	phosphatase and actin regulator 4	344	Pro-rich.						actin binding|protein phosphatase inhibitor activity	p.P356fs*33(1)		NS(1)|biliary_tract(1)|breast(1)|endometrium(4)|kidney(4)|large_intestine(6)|lung(10)|ovary(3)|skin(1)|urinary_tract(1)	32		Colorectal(325;3.46e-05)|Lung NSC(340;4.37e-05)|all_lung(284;7.01e-05)|Renal(390;0.00121)|Breast(348;0.00345)|all_neural(195;0.0208)|Myeloproliferative disorder(586;0.0255)|Ovarian(437;0.0261)		OV - Ovarian serous cystadenocarcinoma(117;1.35e-21)|Colorectal(126;2.96e-08)|COAD - Colon adenocarcinoma(152;1.7e-06)|KIRC - Kidney renal clear cell carcinoma(1967;0.00273)|STAD - Stomach adenocarcinoma(196;0.00299)|BRCA - Breast invasive adenocarcinoma(304;0.0144)|READ - Rectum adenocarcinoma(331;0.0649)		TCGCTCTCCGTCCCCCCCACTG	0.515													9	1082	---	---	---	---					
CCDC28B	79140	broad.mit.edu	37	1	32670247	32670248	+	Frame_Shift_Del	DEL	TG	TG	-			TCGA-HZ-7924-01A-11D-2154-08	TCGA-HZ-7924-10A-01D-2154-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c4c1f4b1-d515-4a44-a975-38fa092bca24	cbb96d11-05d7-46a3-ace3-0b6010d95fb2	g.chr1:32670247_32670248delTG	ENST00000421922.2	+	5	674_675	c.574_575delTG	c.(574-576)tfs	p.C192fs	CCDC28B_ENST00000483009.1_Intron|CCDC28B_ENST00000373602.5_Intron			Q9BUN5	CC28B_HUMAN	coiled-coil domain containing 28B	0										large_intestine(4)|lung(3)|ovary(1)|upper_aerodigestive_tract(2)	10		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0837)|Ovarian(437;0.101)|Breast(348;0.174)				AACCCGTCTATGTGTGTGTGTT	0.500													9	1050	---	---	---	---					
C1orf94	84970	broad.mit.edu	37	1	34666398	34666398	+	Frame_Shift_Del	DEL	A	A	-			TCGA-HZ-7924-01A-11D-2154-08	TCGA-HZ-7924-10A-01D-2154-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c4c1f4b1-d515-4a44-a975-38fa092bca24	cbb96d11-05d7-46a3-ace3-0b6010d95fb2	g.chr1:34666398delA	ENST00000488417.1	+	3	1155	c.1035delA	c.(1033-1035)ccfs	p.P345fs	C1orf94_ENST00000373374.3_Frame_Shift_Del_p.P155fs	NM_001134734.1	NP_001128206.1	Q6P1W5	CA094_HUMAN	chromosome 1 open reading frame 94	155							protein binding			central_nervous_system(1)|endometrium(3)|kidney(2)|large_intestine(5)|lung(15)|skin(4)|upper_aerodigestive_tract(2)	32		Myeloproliferative disorder(586;0.0393)				CCAAGGAGCCAAAAAAGGGTC	0.572													9	536	---	---	---	---					
TMCO2	127391	broad.mit.edu	37	1	40713708	40713709	+	Frame_Shift_Del	DEL	TC	TC	-			TCGA-HZ-7924-01A-11D-2154-08	TCGA-HZ-7924-10A-01D-2154-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c4c1f4b1-d515-4a44-a975-38fa092bca24	cbb96d11-05d7-46a3-ace3-0b6010d95fb2	g.chr1:40713708_40713709delTC	ENST00000372766.3	+	1	136_137	c.43_44delTC	c.(43-45)tfs	p.S15fs	TMCO2_ENST00000468258.1_Intron	NM_001008740.3	NP_001008740.1	Q7Z6W1	TMCO2_HUMAN	transmembrane and coiled-coil domains 2	15						integral to membrane				kidney(1)|large_intestine(3)|lung(1)|ovary(1)	6	Lung NSC(20;4.38e-06)|Ovarian(52;0.00167)|all_hematologic(146;0.0501)|Acute lymphoblastic leukemia(166;0.074)	Myeloproliferative disorder(586;0.0255)	OV - Ovarian serous cystadenocarcinoma(33;6.3e-18)			CCTCTTAGAGTCTCTCTCTCTC	0.406													12	1086	---	---	---	---					
IPP	3652	broad.mit.edu	37	1	46184897	46184898	+	Frame_Shift_Del	DEL	AC	AC	-			TCGA-HZ-7924-01A-11D-2154-08	TCGA-HZ-7924-10A-01D-2154-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c4c1f4b1-d515-4a44-a975-38fa092bca24	cbb96d11-05d7-46a3-ace3-0b6010d95fb2	g.chr1:46184897_46184898delAC	ENST00000396478.3	-	6	1265_1266	c.1163_1164delGT	c.(1162-1164)tfs	p.C388fs		NM_005897.2	NP_005888.1	Q9Y573	IPP_HUMAN	intracisternal A particle-promoted polypeptide	388						actin cytoskeleton|cytoplasm	actin binding			central_nervous_system(1)|endometrium(1)|kidney(4)|large_intestine(6)|lung(5)|ovary(1)|stomach(2)	20	Acute lymphoblastic leukemia(166;0.155)					TAGCCCCATAACACACACACAC	0.347													10	356	---	---	---	---					
TRIM33	51592	broad.mit.edu	37	1	114968116	114968118	+	In_Frame_Del	DEL	TGT	TGT	-			TCGA-HZ-7924-01A-11D-2154-08	TCGA-HZ-7924-10A-01D-2154-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c4c1f4b1-d515-4a44-a975-38fa092bca24	cbb96d11-05d7-46a3-ace3-0b6010d95fb2	g.chr1:114968116_114968118delTGT	ENST00000358465.2	-	9	1731_1733	c.1648_1650delACA	c.(1648-1650)del	p.T550del	TRIM33_ENST00000450349.2_In_Frame_Del_p.T158del|TRIM33_ENST00000369543.2_In_Frame_Del_p.T550del	NM_015906.3	NP_056990.3	Q9UPN9	TRI33_HUMAN	tripartite motif containing 33	550	Poly-Thr.				negative regulation of BMP signaling pathway|negative regulation of transcription, DNA-dependent|protein ubiquitination|regulation of transforming growth factor beta receptor signaling pathway|transcription, DNA-dependent	nucleus	co-SMAD binding|DNA binding|ligase activity|R-SMAD binding|zinc ion binding			breast(2)|central_nervous_system(5)|cervix(1)|endometrium(7)|kidney(2)|large_intestine(10)|lung(14)|ovary(1)|prostate(2)|skin(3)|upper_aerodigestive_tract(1)	48	all_epithelial(7;0.000132)|all_lung(7;0.00106)|Lung SC(450;0.184)	all_cancers(81;3.03e-08)|all_epithelial(167;3.24e-08)|all_lung(203;9.97e-06)|Lung NSC(69;1.74e-05)		Lung(183;0.0234)|Colorectal(144;0.0686)|COAD - Colon adenocarcinoma(174;0.111)|all cancers(265;0.112)|Epithelial(280;0.124)|LUSC - Lung squamous cell carcinoma(189;0.133)		GATGCTGTTGTGTTGTTGTTGTT	0.429			T	RET	papillary thyroid								7	1460	---	---	---	---					
SYCP1	6847	broad.mit.edu	37	1	115537600	115537601	+	Frame_Shift_Ins	INS	-	-	A			TCGA-HZ-7924-01A-11D-2154-08	TCGA-HZ-7924-10A-01D-2154-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c4c1f4b1-d515-4a44-a975-38fa092bca24	cbb96d11-05d7-46a3-ace3-0b6010d95fb2	g.chr1:115537600_115537601insA	ENST00000369522.3	+	32	3131_3132	c.2891_2892insA	c.(2890-2892)aaafs	p.K964fs	SYCP1_ENST00000369518.1_Frame_Shift_Ins_p.K964fs|SYCP1_ENST00000477590.1_3'UTR	NM_003176.2	NP_003167.2	Q15431	SYCP1_HUMAN	synaptonemal complex protein 1	964	Arg/Lys-rich (basic).				cell division|reciprocal meiotic recombination|spermatogenesis|synaptonemal complex assembly		DNA binding		RGS22/SYCP1(2)	NS(1)|breast(1)|central_nervous_system(1)|endometrium(3)|kidney(1)|large_intestine(17)|lung(20)|prostate(1)|skin(2)|upper_aerodigestive_tract(1)	48	Lung SC(450;0.211)	all_cancers(81;8.65e-08)|all_epithelial(167;3.32e-07)|all_lung(203;6.55e-06)|Lung NSC(69;1.11e-05)|Acute lymphoblastic leukemia(138;0.221)		Lung(183;0.0234)|Colorectal(144;0.0686)|COAD - Colon adenocarcinoma(174;0.111)|all cancers(265;0.112)|Epithelial(280;0.124)|LUSC - Lung squamous cell carcinoma(189;0.133)		AAAATGGATAGAAAAAAAAAAC	0.356													17	338	---	---	---	---					
NBPF14	25832	broad.mit.edu	37	1	148012532	148012532	+	Frame_Shift_Del	DEL	T	T	-			TCGA-HZ-7924-01A-11D-2154-08	TCGA-HZ-7924-10A-01D-2154-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c4c1f4b1-d515-4a44-a975-38fa092bca24	cbb96d11-05d7-46a3-ace3-0b6010d95fb2	g.chr1:148012532delT	ENST00000369219.1	-	12	1443	c.1427delA	c.(1426-1428)agfs	p.K476fs				Q5TI25	NBPFE_HUMAN	neuroblastoma breakpoint family, member 14	476	NBPF 5.					cytoplasm				NS(1)|endometrium(2)|haematopoietic_and_lymphoid_tissue(1)|kidney(4)|large_intestine(1)|lung(23)|ovary(2)|pancreas(2)|prostate(2)|skin(1)|stomach(2)|urinary_tract(1)	42	all_hematologic(923;0.032)					GCCAACATGCTTTTCCTCCAA	0.443													10	7430	---	---	---	---					
MCL1	4170	broad.mit.edu	37	1	150551492	150551494	+	In_Frame_Del	DEL	TCC	TCC	-			TCGA-HZ-7924-01A-11D-2154-08	TCGA-HZ-7924-10A-01D-2154-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c4c1f4b1-d515-4a44-a975-38fa092bca24	cbb96d11-05d7-46a3-ace3-0b6010d95fb2	g.chr1:150551492_150551494delTCC	ENST00000369026.2	-	1	572_574	c.513_515delGGA	c.(511-516)gac>ga	p.ED171del	MCL1_ENST00000307940.3_In_Frame_Del_p.ED171del	NM_001197320.1|NM_021960.4	NP_001184249.1|NP_068779.1	Q07820	MCL1_HUMAN	myeloid cell leukemia sequence 1 (BCL2-related)	171	PEST-like.				anti-apoptosis|apoptosis|cell fate determination|cellular homeostasis|multicellular organismal development|response to cytokine stimulus	integral to membrane|mitochondrial outer membrane|nucleoplasm	BH3 domain binding|protein binding|protein channel activity|protein heterodimerization activity			endometrium(2)|large_intestine(1)|lung(4)|prostate(1)	8	all_cancers(9;1.69e-53)|all_epithelial(9;1.95e-43)|all_lung(15;1.09e-34)|Lung NSC(24;4.04e-31)|Breast(34;0.000326)|Lung SC(34;0.00471)|Ovarian(49;0.0167)|all_hematologic(923;0.0395)|Hepatocellular(266;0.108)|Melanoma(130;0.128)|Colorectal(459;0.171)		UCEC - Uterine corpus endometrioid carcinoma (35;0.0241)|Epithelial(6;3.18e-23)|all cancers(9;1.79e-22)|OV - Ovarian serous cystadenocarcinoma(6;1.13e-14)|BRCA - Breast invasive adenocarcinoma(12;0.000503)|LUSC - Lung squamous cell carcinoma(543;0.171)|STAD - Stomach adenocarcinoma(528;0.206)			GTACAACTCGTCCTCCTCCTCCT	0.635													7	414	---	---	---	---					
MRPL9	65005	broad.mit.edu	37	1	151735572	151735573	+	Frame_Shift_Ins	INS	-	-	C			TCGA-HZ-7924-01A-11D-2154-08	TCGA-HZ-7924-10A-01D-2154-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c4c1f4b1-d515-4a44-a975-38fa092bca24	cbb96d11-05d7-46a3-ace3-0b6010d95fb2	g.chr1:151735572_151735573insC	ENST00000368830.3	-	2	287_288	c.203_204insG	c.(202-204)gcgfs	p.A68fs	MRPL9_ENST00000467306.1_5'UTR|OAZ3_ENST00000315067.8_5'UTR|MRPL9_ENST00000368829.3_Frame_Shift_Ins_p.A68fs|OAZ3_ENST00000321531.5_5'UTR	NM_031420.2	NP_113608.1	Q9BYD2	RM09_HUMAN	mitochondrial ribosomal protein L9	68					translation	mitochondrial ribosome	structural constituent of ribosome			endometrium(2)|kidney(2)|large_intestine(2)|lung(4)|ovary(1)|upper_aerodigestive_tract(1)	12	Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.14)		LUSC - Lung squamous cell carcinoma(543;0.181)			GCGGCTTCCGGCCCTCCCCGGC	0.639													7	317	---	---	---	---					
LCE4A	199834	broad.mit.edu	37	1	152681693	152681698	+	In_Frame_Del	DEL	TGTGGT	TGTGGT	-	rs74871420		TCGA-HZ-7924-01A-11D-2154-08	TCGA-HZ-7924-10A-01D-2154-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c4c1f4b1-d515-4a44-a975-38fa092bca24	cbb96d11-05d7-46a3-ace3-0b6010d95fb2	g.chr1:152681693_152681698delTGTGGT	ENST00000368777.1	+	2	398_403	c.142_147delTGTGGT	c.(142-147)del	p.CG48del	LCE4A_ENST00000335535.3_In_Frame_Del_p.CG48del			Q5TA78	LCE4A_HUMAN	late cornified envelope 4A	48	Cys-rich.				keratinization					endometrium(1)|kidney(1)|large_intestine(2)|lung(5)|skin(1)	10	Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.242)		LUSC - Lung squamous cell carcinoma(543;0.116)			CTCTGGGGGCTGTGGTTGCTGCAGCT	0.578													14	610	---	---	---	---					
S100A8	6279	broad.mit.edu	37	1	153362715	153362715	+	Frame_Shift_Del	DEL	T	T	-			TCGA-HZ-7924-01A-11D-2154-08	TCGA-HZ-7924-10A-01D-2154-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c4c1f4b1-d515-4a44-a975-38fa092bca24	cbb96d11-05d7-46a3-ace3-0b6010d95fb2	g.chr1:153362715delT	ENST00000368733.3	-	3	315	c.146delA	c.(145-147)agfs	p.K49fs	S100A8_ENST00000477801.1_5'UTR|S100A8_ENST00000368732.1_Frame_Shift_Del_p.K49fs	NM_002964.4	NP_002955.2	P05109	S10A8_HUMAN	S100 calcium binding protein A8	49	EF-hand 2.				chemotaxis	cytoplasm|cytoskeleton|plasma membrane	calcium ion binding|protein binding			breast(1)|endometrium(1)|lung(1)|urinary_tract(1)	4	all_lung(78;2.81e-33)|Lung NSC(65;9.54e-32)|Hepatocellular(266;0.0877)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.171)			GTCTGCACCCTTTTTCTGTCA	0.507													7	1028	---	---	---	---					
NES	10763	broad.mit.edu	37	1	156642803	156642804	+	Frame_Shift_Ins	INS	-	-	G			TCGA-HZ-7924-01A-11D-2154-08	TCGA-HZ-7924-10A-01D-2154-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c4c1f4b1-d515-4a44-a975-38fa092bca24	cbb96d11-05d7-46a3-ace3-0b6010d95fb2	g.chr1:156642803_156642804insG	ENST00000368223.3	-	4	1308_1309	c.1176_1177insC	c.(1174-1179)cccaccfs	p.T393fs		NM_006617.1	NP_006608.1	P48681	NEST_HUMAN	nestin	393	Tail.				brain development|embryonic camera-type eye development|G2/M transition of mitotic cell cycle|negative regulation of apoptosis|positive regulation of intermediate filament depolymerization|positive regulation of neural precursor cell proliferation|stem cell proliferation	cytoplasm|intermediate filament	intermediate filament binding|structural molecule activity			central_nervous_system(1)|endometrium(5)|haematopoietic_and_lymphoid_tissue(1)|kidney(3)|large_intestine(9)|lung(30)|ovary(6)|prostate(1)|skin(3)|stomach(1)|urinary_tract(4)	64	all_hematologic(923;0.088)|Hepatocellular(266;0.158)					GCCTGAGGTGTGGGGGGGATGG	0.594													7	844	---	---	---	---					
IPO9	55705	broad.mit.edu	37	1	201843998	201844000	+	In_Frame_Del	DEL	GAG	GAG	-			TCGA-HZ-7924-01A-11D-2154-08	TCGA-HZ-7924-10A-01D-2154-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c4c1f4b1-d515-4a44-a975-38fa092bca24	cbb96d11-05d7-46a3-ace3-0b6010d95fb2	g.chr1:201843998_201844000delGAG	ENST00000361565.4	+	22	2941_2943	c.2872_2874delGAG	c.(2872-2874)del	p.E962del		NM_018085.4	NP_060555.2	Q96P70	IPO9_HUMAN	importin 9	962					protein import into nucleus	cytoplasm|nucleus	histone binding|protein transporter activity			cervix(1)|endometrium(5)|kidney(4)|large_intestine(5)|lung(16)|ovary(2)|prostate(1)|skin(2)|stomach(1)|upper_aerodigestive_tract(1)	38						ggaggaggaagaggaggaggagg	0.443													8	511	---	---	---	---					
ZC3H11A	9877	broad.mit.edu	37	1	203786225	203786225	+	Frame_Shift_Del	DEL	T	T	-			TCGA-HZ-7924-01A-11D-2154-08	TCGA-HZ-7924-10A-01D-2154-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c4c1f4b1-d515-4a44-a975-38fa092bca24	cbb96d11-05d7-46a3-ace3-0b6010d95fb2	g.chr1:203786225delT	ENST00000545588.1	+	2	3854	c.27delT	c.(25-27)tafs	p.Y9fs	ZC3H11A_ENST00000367214.1_Frame_Shift_Del_p.Y9fs|ZC3H11A_ENST00000332127.4_Frame_Shift_Del_p.Y9fs|ZC3H11A_ENST00000367210.1_Frame_Shift_Del_p.Y9fs|ZC3H11A_ENST00000367212.3_Frame_Shift_Del_p.Y9fs	NM_001271675.1	NP_001258604.1	O75152	ZC11A_HUMAN	zinc finger CCCH-type containing 11A	9							nucleic acid binding|protein binding|zinc ion binding			central_nervous_system(1)|endometrium(7)|kidney(1)|large_intestine(4)|lung(15)|prostate(1)|skin(2)|upper_aerodigestive_tract(1)	32	all_cancers(21;0.0904)|all_epithelial(62;0.234)		BRCA - Breast invasive adenocarcinoma(75;0.109)			AAGACTGCTATTTTTTTTTCT	0.373													10	513	---	---	---	---					
MTR	4548	broad.mit.edu	37	1	237024474	237024474	+	Frame_Shift_Del	DEL	A	A	-			TCGA-HZ-7924-01A-11D-2154-08	TCGA-HZ-7924-10A-01D-2154-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c4c1f4b1-d515-4a44-a975-38fa092bca24	cbb96d11-05d7-46a3-ace3-0b6010d95fb2	g.chr1:237024474delA	ENST00000366577.5	+	20	2487	c.2093delA	c.(2092-2094)cafs	p.Q698fs	MTR_ENST00000535889.1_Intron	NM_000254.2	NP_000245.2	Q99707	METH_HUMAN	5-methyltetrahydrofolate-homocysteine methyltransferase	698	B12-binding N-terminal.				nervous system development|xenobiotic metabolic process	cytosol	cobalamin binding|homocysteine S-methyltransferase activity|methionine synthase activity|protein binding|zinc ion binding			breast(4)|central_nervous_system(1)|cervix(1)|endometrium(10)|haematopoietic_and_lymphoid_tissue(2)|kidney(1)|large_intestine(8)|lung(30)|ovary(1)|pancreas(1)|prostate(2)|skin(4)|stomach(1)|upper_aerodigestive_tract(1)	67	Ovarian(103;0.0634)|Breast(184;0.221)	all_cancers(173;2.79e-22)|all_epithelial(177;4.84e-14)|Breast(1374;0.00123)|Prostate(94;0.0181)|Lung SC(1967;0.0262)|Acute lymphoblastic leukemia(190;0.117)	OV - Ovarian serous cystadenocarcinoma(106;0.0106)	KIRC - Kidney renal clear cell carcinoma(1967;0.248)	Hydroxocobalamin(DB00200)|L-Methionine(DB00134)|Tetrahydrofolic acid(DB00116)	AGGTTAAACCAAAAAAAATAT	0.308													7	442	---	---	---	---					
OTOF	9381	broad.mit.edu	37	2	26693554	26693556	+	In_Frame_Del	DEL	CTT	CTT	-			TCGA-HZ-7924-01A-11D-2154-08	TCGA-HZ-7924-10A-01D-2154-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c4c1f4b1-d515-4a44-a975-38fa092bca24	cbb96d11-05d7-46a3-ace3-0b6010d95fb2	g.chr2:26693554_26693556delCTT	ENST00000272371.2	-	32	4054_4056	c.3928_3930delAAG	c.(3928-3930)del	p.K1310del	OTOF_ENST00000402415.3_In_Frame_Del_p.K620del|OTOF_ENST00000339598.3_In_Frame_Del_p.K543del|OTOF_ENST00000338581.6_In_Frame_Del_p.K543del|OTOF_ENST00000403946.3_In_Frame_Del_p.K1310del	NM_194248.2	NP_919224.1	Q9HC10	OTOF_HUMAN	otoferlin	1310	Poly-Lys.				cellular membrane fusion|sensory perception of sound|synaptic vesicle exocytosis	basolateral plasma membrane|cell junction|cytosol|endoplasmic reticulum membrane|integral to membrane|membrane fraction|synaptic vesicle membrane	calcium ion binding			NS(1)|autonomic_ganglia(1)|breast(9)|central_nervous_system(4)|endometrium(9)|haematopoietic_and_lymphoid_tissue(1)|kidney(5)|large_intestine(14)|lung(35)|ovary(8)|pancreas(1)|prostate(5)|skin(5)|stomach(4)|upper_aerodigestive_tract(3)|urinary_tract(1)	106	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					CCGCAGTGCCcttcttcttcttc	0.576													9	457	---	---	---	---					
RMDN2	151393	broad.mit.edu	37	2	38178783	38178783	+	Frame_Shift_Del	DEL	T	T	-			TCGA-HZ-7924-01A-11D-2154-08	TCGA-HZ-7924-10A-01D-2154-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c4c1f4b1-d515-4a44-a975-38fa092bca24	cbb96d11-05d7-46a3-ace3-0b6010d95fb2	g.chr2:38178783delT	ENST00000407257.1	+	2	572	c.425delT	c.(424-426)atfs	p.I142fs	RMDN2_ENST00000354545.2_Intron|RMDN2_ENST00000234195.3_Frame_Shift_Del_p.I142fs|RMDN2_ENST00000417700.2_Intron|RMDN2-AS1_ENST00000414365.2_RNA|RMDN2_ENST00000406384.1_Intron|RMDN2_ENST00000402091.3_Frame_Shift_Del_p.I142fs					regulator of microtubule dynamics 2																		AAGAGTGCCATTTTTTTTGAT	0.333													8	469	---	---	---	---					
RTN4	57142	broad.mit.edu	37	2	55253745	55253746	+	Frame_Shift_Ins	INS	-	-	T			TCGA-HZ-7924-01A-11D-2154-08	TCGA-HZ-7924-10A-01D-2154-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c4c1f4b1-d515-4a44-a975-38fa092bca24	cbb96d11-05d7-46a3-ace3-0b6010d95fb2	g.chr2:55253745_55253746insT	ENST00000337526.6	-	3	1732_1733	c.1489_1490insA	c.(1489-1491)agafs	p.R497fs	RTN4_ENST00000317610.7_Intron|RTN4_ENST00000394611.2_Frame_Shift_Ins_p.R291fs|RTN4_ENST00000402434.2_Intron|RTN4_ENST00000357732.4_Intron|RTN4_ENST00000354474.6_Frame_Shift_Ins_p.R265fs|RTN4_ENST00000405240.1_Frame_Shift_Ins_p.R291fs|RTN4_ENST00000404909.1_Frame_Shift_Ins_p.R291fs|RTN4_ENST00000357376.3_Frame_Shift_Ins_p.R291fs	NM_020532.4	NP_065393.1	Q9NQC3	RTN4_HUMAN	reticulon 4	497					apoptosis|axonal fasciculation|cerebral cortex radial glia guided migration|endoplasmic reticulum tubular network organization|negative regulation of anti-apoptosis|negative regulation of axon extension|nerve growth factor receptor signaling pathway|regulation of apoptosis|regulation of branching morphogenesis of a nerve|regulation of cell migration	integral to endoplasmic reticulum membrane|nuclear envelope|plasma membrane	protein binding			NS(2)|breast(4)|central_nervous_system(1)|endometrium(2)|kidney(2)|large_intestine(11)|lung(9)|ovary(2)|prostate(1)|skin(1)|stomach(1)	36						CTTTTCTTCTATTTTTTTTTCA	0.381													9	542	---	---	---	---					
ITPRIPL1	150771	broad.mit.edu	37	2	96992793	96992795	+	In_Frame_Del	DEL	GAG	GAG	-			TCGA-HZ-7924-01A-11D-2154-08	TCGA-HZ-7924-10A-01D-2154-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c4c1f4b1-d515-4a44-a975-38fa092bca24	cbb96d11-05d7-46a3-ace3-0b6010d95fb2	g.chr2:96992793_96992795delGAG	ENST00000361124.4	+	1	859_861	c.448_450delGAG	c.(448-450)del	p.E155del	ITPRIPL1_ENST00000439118.2_In_Frame_Del_p.E147del|ITPRIPL1_ENST00000542887.1_In_Frame_Del_p.E139del|ITPRIPL1_ENST00000536814.1_In_Frame_Del_p.E139del	NM_178495.5	NP_848590.3	Q6GPH6	IPIL1_HUMAN	inositol 1,4,5-trisphosphate receptor interacting protein-like 1	147						integral to membrane				breast(1)|central_nervous_system(2)|endometrium(3)|haematopoietic_and_lymphoid_tissue(1)|kidney(3)|large_intestine(3)|lung(7)|ovary(1)|prostate(2)|skin(1)|stomach(1)|upper_aerodigestive_tract(1)|urinary_tract(1)	27						TTCCAGCAGTGAGGAGGAGGAGG	0.532													14	396	---	---	---	---					
OSBPL6	114880	broad.mit.edu	37	2	179196281	179196281	+	Frame_Shift_Del	DEL	T	T	-			TCGA-HZ-7924-01A-11D-2154-08	TCGA-HZ-7924-10A-01D-2154-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c4c1f4b1-d515-4a44-a975-38fa092bca24	cbb96d11-05d7-46a3-ace3-0b6010d95fb2	g.chr2:179196281delT	ENST00000190611.4	+	6	697	c.321delT	c.(319-321)cgfs	p.R107fs	OSBPL6_ENST00000315022.2_Frame_Shift_Del_p.R86fs|OSBPL6_ENST00000392505.2_Frame_Shift_Del_p.R107fs|OSBPL6_ENST00000409045.3_Frame_Shift_Del_p.R107fs|OSBPL6_ENST00000359685.3_Frame_Shift_Del_p.R107fs|OSBPL6_ENST00000477097.1_3'UTR|OSBPL6_ENST00000357080.4_Frame_Shift_Del_p.R107fs|OSBPL6_ENST00000409631.1_Frame_Shift_Del_p.R107fs	NM_032523.3	NP_115912.1	Q9BZF3	OSBL6_HUMAN	oxysterol binding protein-like 6	107	PH.				lipid transport		lipid binding			NS(1)|breast(1)|central_nervous_system(1)|endometrium(3)|kidney(3)|large_intestine(13)|lung(18)|pancreas(1)|prostate(1)|skin(2)|stomach(1)|upper_aerodigestive_tract(1)	46			OV - Ovarian serous cystadenocarcinoma(117;0.00578)|Epithelial(96;0.00847)|all cancers(119;0.0335)			TCTTGCAGCGTTTTTTTGTCC	0.363													7	1032	---	---	---	---					
SLC11A1	6556	broad.mit.edu	37	2	219252307	219252307	+	Frame_Shift_Del	DEL	T	T	-			TCGA-HZ-7924-01A-11D-2154-08	TCGA-HZ-7924-10A-01D-2154-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c4c1f4b1-d515-4a44-a975-38fa092bca24	cbb96d11-05d7-46a3-ace3-0b6010d95fb2	g.chr2:219252307delT	ENST00000233202.6	+	7	931	c.591delT	c.(589-591)gcfs	p.A197fs	SLC11A1_ENST00000539932.1_Frame_Shift_Del_p.A79fs	NM_000578.3	NP_000569.3	P49279	NRAM1_HUMAN	solute carrier family 11 (proton-coupled divalent metal ion transporter), member 1	197					activation of protein kinase activity|antigen processing and presentation of peptide antigen|cadmium ion transmembrane transport|cellular cadmium ion homeostasis|cellular iron ion homeostasis|defense response to Gram-negative bacterium|defense response to protozoan|divalent metal ion export|inflammatory response|interleukin-2 production|interleukin-3 production|iron ion transport|L-arginine import|macrophage activation|MHC class II biosynthetic process|mRNA stabilization|multicellular organismal iron ion homeostasis|negative regulation of cytokine production|nitrite transport|phagocytosis|positive regulation of dendritic cell antigen processing and presentation|positive regulation of interferon-gamma production|positive regulation of phagocytosis|positive regulation of T-helper 1 type immune response|positive regulation of transcription from RNA polymerase II promoter|respiratory burst|response to interferon-gamma|response to lipopolysaccharide|T cell cytokine production|T cell proliferation involved in immune response|vacuolar acidification|wound healing	integral to plasma membrane|late endosome membrane|lysosome|phagocytic vesicle membrane|tertiary granule membrane	manganese ion transmembrane transporter activity|metal ion:hydrogen antiporter activity|protein homodimerization activity			NS(1)|breast(2)|central_nervous_system(1)|endometrium(2)|haematopoietic_and_lymphoid_tissue(1)|kidney(1)|large_intestine(2)|lung(3)|ovary(3)|pancreas(1)|skin(1)|upper_aerodigestive_tract(1)	19		Renal(207;0.0474)		Epithelial(149;1.16e-06)|all cancers(144;0.000195)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)		AGCTGGAAGCTTTTTTTGGAC	0.448													9	2012	---	---	---	---					
GAL3ST2	64090	broad.mit.edu	37	2	242738494	242738496	+	In_Frame_Del	DEL	TCC	TCC	-			TCGA-HZ-7924-01A-11D-2154-08	TCGA-HZ-7924-10A-01D-2154-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c4c1f4b1-d515-4a44-a975-38fa092bca24	cbb96d11-05d7-46a3-ace3-0b6010d95fb2	g.chr2:242738494_242738496delTCC	ENST00000192314.6	+	2	175_177	c.44_46delTCC	c.(43-48)atc>a	p.IL15del		NM_022134.2	NP_071417.2	Q9H3Q3	G3ST2_HUMAN	galactose-3-O-sulfotransferase 2	15					biosynthetic process	Golgi cisterna membrane|integral to membrane	galactosylceramide sulfotransferase activity	p.L16I(1)		endometrium(1)|kidney(1)|large_intestine(1)|lung(9)|prostate(1)|skin(1)	14		all_cancers(19;1.09e-40)|all_epithelial(40;2.03e-18)|Breast(86;1.53e-05)|all_lung(227;0.00338)|Renal(207;0.00502)|Ovarian(221;0.00716)|Lung NSC(271;0.012)|Esophageal squamous(248;0.129)|Melanoma(123;0.144)|all_hematologic(139;0.158)|all_neural(83;0.243)|Hepatocellular(293;0.244)		Epithelial(32;4.59e-33)|all cancers(36;9.89e-31)|OV - Ovarian serous cystadenocarcinoma(60;7.89e-15)|Kidney(56;3.04e-09)|KIRC - Kidney renal clear cell carcinoma(57;3.23e-08)|BRCA - Breast invasive adenocarcinoma(100;1.63e-06)|Lung(119;0.000152)|LUSC - Lung squamous cell carcinoma(224;0.00154)|Colorectal(34;0.0129)|COAD - Colon adenocarcinoma(134;0.0833)		TTCCGGGTCATCCTCCTCCTCCT	0.631													9	392	---	---	---	---					
QRICH1	54870	broad.mit.edu	37	3	49094314	49094316	+	In_Frame_Del	DEL	TGC	TGC	-			TCGA-HZ-7924-01A-11D-2154-08	TCGA-HZ-7924-10A-01D-2154-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c4c1f4b1-d515-4a44-a975-38fa092bca24	cbb96d11-05d7-46a3-ace3-0b6010d95fb2	g.chr3:49094314_49094316delTGC	ENST00000395443.2	-	3	1789_1791	c.1317_1319delGCA	c.(1315-1320)caa>ca	p.QQ439del	QRICH1_ENST00000424300.1_In_Frame_Del_p.QQ439del|QRICH1_ENST00000479449.1_5'UTR|QRICH1_ENST00000357496.2_In_Frame_Del_p.QQ439del	NM_198880.1	NP_942581.1	Q2TAL8	QRIC1_HUMAN	glutamine-rich 1	439	Gln-rich.									breast(2)|endometrium(5)|large_intestine(8)|lung(8)|ovary(1)|skin(1)	25				BRCA - Breast invasive adenocarcinoma(193;8.88e-05)|Kidney(197;0.00239)|KIRC - Kidney renal clear cell carcinoma(197;0.00258)		AACTTGGAgttgctgctgctgct	0.562													7	381	---	---	---	---					
RP11-325B23.2	0	broad.mit.edu	37	3	98031434	98031434	+	RNA	DEL	A	A	-			TCGA-HZ-7924-01A-11D-2154-08	TCGA-HZ-7924-10A-01D-2154-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c4c1f4b1-d515-4a44-a975-38fa092bca24	cbb96d11-05d7-46a3-ace3-0b6010d95fb2	g.chr3:98031434delA	ENST00000508616.1	+	0	149				OR5H8P_ENST00000394191.2_RNA																							TTACAATCTTAAAAAAAAAAG	0.333													8	169	---	---	---	---					
LNP1	348801	broad.mit.edu	37	3	100148586	100148588	+	In_Frame_Del	DEL	GAT	GAT	-			TCGA-HZ-7924-01A-11D-2154-08	TCGA-HZ-7924-10A-01D-2154-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c4c1f4b1-d515-4a44-a975-38fa092bca24	cbb96d11-05d7-46a3-ace3-0b6010d95fb2	g.chr3:100148586_100148588delGAT	ENST00000383693.3	+	2	1293_1295	c.13_15delGAT	c.(13-15)del	p.D10del	LNP1_ENST00000489752.1_In_Frame_Del_p.D10del	NM_001085451.1	NP_001078920.1	A1A4G5	LNP1_HUMAN	leukemia NUP98 fusion partner 1	10	Poly-Asp.									cervix(1)|endometrium(1)|haematopoietic_and_lymphoid_tissue(1)|large_intestine(2)|lung(1)	6						GGAGCACAAAGATGATGATGATG	0.507													8	1209	---	---	---	---					
PCOLCE2	26577	broad.mit.edu	37	3	142548586	142548586	+	Frame_Shift_Del	DEL	T	T	-			TCGA-HZ-7924-01A-11D-2154-08	TCGA-HZ-7924-10A-01D-2154-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c4c1f4b1-d515-4a44-a975-38fa092bca24	cbb96d11-05d7-46a3-ace3-0b6010d95fb2	g.chr3:142548586delT	ENST00000295992.3	-	6	1119	c.813delA	c.(811-813)aafs	p.K271fs	PCOLCE2_ENST00000485766.1_Intron	NM_013363.3	NP_037495.1	Q9UKZ9	PCOC2_HUMAN	procollagen C-endopeptidase enhancer 2	271						extracellular region	collagen binding|heparin binding|peptidase activator activity			NS(1)|endometrium(1)|large_intestine(11)|lung(15)|ovary(2)|skin(1)|upper_aerodigestive_tract(1)	32						TTGTAGGCAGTTTTTTTGGCC	0.383													7	960	---	---	---	---					
VEPH1	79674	broad.mit.edu	37	3	157081226	157081227	+	Frame_Shift_Ins	INS	-	-	T			TCGA-HZ-7924-01A-11D-2154-08	TCGA-HZ-7924-10A-01D-2154-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c4c1f4b1-d515-4a44-a975-38fa092bca24	cbb96d11-05d7-46a3-ace3-0b6010d95fb2	g.chr3:157081226_157081227insT	ENST00000362010.2	-	9	1968_1969	c.1661_1662insA	c.(1660-1662)actfs	p.T554fs	VEPH1_ENST00000543418.1_Frame_Shift_Ins_p.T554fs|RP11-550I24.2_ENST00000487238.1_RNA|VEPH1_ENST00000392833.2_Frame_Shift_Ins_p.T554fs|VEPH1_ENST00000392832.2_Frame_Shift_Ins_p.T554fs	NM_001167912.1	NP_001161384.1	Q14D04	MELT_HUMAN	ventricular zone expressed PH domain-containing 1	554						plasma membrane				autonomic_ganglia(1)|breast(5)|cervix(1)|kidney(3)|large_intestine(9)|lung(22)|ovary(1)|pancreas(1)|stomach(2)|upper_aerodigestive_tract(2)|urinary_tract(1)	48			Lung(72;0.0272)|LUSC - Lung squamous cell carcinoma(72;0.0461)			CTTTGCTGAGGTTTTTTTTTAA	0.396													15	899	---	---	---	---					
HTR3E	285242	broad.mit.edu	37	3	183822596	183822596	+	Frame_Shift_Del	DEL	A	A	-			TCGA-HZ-7924-01A-11D-2154-08	TCGA-HZ-7924-10A-01D-2154-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c4c1f4b1-d515-4a44-a975-38fa092bca24	cbb96d11-05d7-46a3-ace3-0b6010d95fb2	g.chr3:183822596delA	ENST00000415389.2	+	5	877	c.411delA	c.(409-411)ccfs	p.P137fs	HTR3E_ENST00000335304.2_Frame_Shift_Del_p.P152fs|HTR3E_ENST00000425359.2_Frame_Shift_Del_p.P122fs|HTR3E-AS1_ENST00000431427.1_RNA|HTR3E_ENST00000440596.2_Frame_Shift_Del_p.P163fs|HTR3E_ENST00000436361.2_Frame_Shift_Del_p.P137fs	NM_001256613.1|NM_198313.2	NP_001243542.1|NP_938055.1	A5X5Y0	5HT3E_HUMAN	5-hydroxytryptamine (serotonin) receptor 3E, ionotropic	137						integral to membrane|plasma membrane|postsynaptic membrane	extracellular ligand-gated ion channel activity|receptor activity			breast(1)|central_nervous_system(1)|cervix(1)|endometrium(3)|kidney(1)|large_intestine(8)|lung(20)|ovary(1)|skin(2)|upper_aerodigestive_tract(2)	40	all_cancers(143;1.46e-10)|Ovarian(172;0.0303)		Epithelial(37;7.06e-36)|OV - Ovarian serous cystadenocarcinoma(80;3.11e-22)			ATAAGACCCCAAAAGGCCTCA	0.428													7	602	---	---	---	---					
ATP13A3	79572	broad.mit.edu	37	3	194147850	194147850	+	Frame_Shift_Del	DEL	A	A	-			TCGA-HZ-7924-01A-11D-2154-08	TCGA-HZ-7924-10A-01D-2154-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c4c1f4b1-d515-4a44-a975-38fa092bca24	cbb96d11-05d7-46a3-ace3-0b6010d95fb2	g.chr3:194147850delA	ENST00000439040.1	-	29	3870	c.3079delT	c.(3079-3081)ggfs	p.W1027fs	ATP13A3_ENST00000256031.4_Frame_Shift_Del_p.W1027fs			Q9H7F0	AT133_HUMAN	ATPase type 13A3	1027					ATP biosynthetic process|cation transport	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|metal ion binding			NS(2)|endometrium(3)|kidney(3)|large_intestine(2)|lung(10)|ovary(1)|prostate(1)|skin(1)|urinary_tract(1)	24	all_cancers(143;6.01e-09)|Ovarian(172;0.0634)	Melanoma(1037;0.211)	OV - Ovarian serous cystadenocarcinoma(49;3.83e-18)|LUSC - Lung squamous cell carcinoma(58;3.55e-06)|Lung(62;4.19e-06)	GBM - Glioblastoma multiforme(46;5.98e-05)		TGTTTGACCCAAAAAAAACCC	0.383													7	309	---	---	---	---					
CRIPAK	285464	broad.mit.edu	37	4	1388441	1388442	+	Frame_Shift_Ins	INS	-	-	CG	rs144787346	byFrequency	TCGA-HZ-7924-01A-11D-2154-08	TCGA-HZ-7924-10A-01D-2154-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c4c1f4b1-d515-4a44-a975-38fa092bca24	cbb96d11-05d7-46a3-ace3-0b6010d95fb2	g.chr4:1388441_1388442insCG	ENST00000324803.4	+	1	3102_3103	c.142_143insCG	c.(142-144)gccfs	p.A48fs		NM_175918.3	NP_787114.2	Q8N1N5	CRPAK_HUMAN	cysteine-rich PAK1 inhibitor	48					ER-nucleus signaling pathway|negative regulation of protein kinase activity|regulation of cytoskeleton organization|response to estrogen stimulus	endoplasmic reticulum|nucleus|plasma membrane	protein binding			NS(3)|breast(1)|central_nervous_system(1)|endometrium(1)|kidney(2)|large_intestine(2)|lung(11)|ovary(1)|pancreas(2)|prostate(6)|skin(4)|urinary_tract(1)	35			OV - Ovarian serous cystadenocarcinoma(23;0.0106)			CTGCTCACACATGCCCATGTGG	0.644													15	2072	---	---	---	---					
CRIPAK	285464	broad.mit.edu	37	4	1388530	1388531	+	Frame_Shift_Ins	INS	-	-	CA			TCGA-HZ-7924-01A-11D-2154-08	TCGA-HZ-7924-10A-01D-2154-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c4c1f4b1-d515-4a44-a975-38fa092bca24	cbb96d11-05d7-46a3-ace3-0b6010d95fb2	g.chr4:1388530_1388531insCA	ENST00000324803.4	+	1	3191_3192	c.231_232insCA	c.(229-234)gcatgtfs	p.C78fs		NM_175918.3	NP_787114.2	Q8N1N5	CRPAK_HUMAN	cysteine-rich PAK1 inhibitor	78					ER-nucleus signaling pathway|negative regulation of protein kinase activity|regulation of cytoskeleton organization|response to estrogen stimulus	endoplasmic reticulum|nucleus|plasma membrane	protein binding			NS(3)|breast(1)|central_nervous_system(1)|endometrium(1)|kidney(2)|large_intestine(2)|lung(11)|ovary(1)|pancreas(2)|prostate(6)|skin(4)|urinary_tract(1)	35			OV - Ovarian serous cystadenocarcinoma(23;0.0106)			GCCCACCTGCTCATGTGCCCAT	0.644													11	1855	---	---	---	---					
CRIPAK	285464	broad.mit.edu	37	4	1389425	1389426	+	Frame_Shift_Del	DEL	CA	CA	-			TCGA-HZ-7924-01A-11D-2154-08	TCGA-HZ-7924-10A-01D-2154-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c4c1f4b1-d515-4a44-a975-38fa092bca24	cbb96d11-05d7-46a3-ace3-0b6010d95fb2	g.chr4:1389425_1389426delCA	ENST00000324803.4	+	1	4086_4087	c.1126_1127delCA	c.(1126-1128)cfs	p.H376fs		NM_175918.3	NP_787114.2	Q8N1N5	CRPAK_HUMAN	cysteine-rich PAK1 inhibitor	376	Interaction with PAK1.				ER-nucleus signaling pathway|negative regulation of protein kinase activity|regulation of cytoskeleton organization|response to estrogen stimulus	endoplasmic reticulum|nucleus|plasma membrane	protein binding			NS(3)|breast(1)|central_nervous_system(1)|endometrium(1)|kidney(2)|large_intestine(2)|lung(11)|ovary(1)|pancreas(2)|prostate(6)|skin(4)|urinary_tract(1)	35			OV - Ovarian serous cystadenocarcinoma(23;0.0106)			CCCGCCTGCTCACACGTGCCCA	0.639													8	1679	---	---	---	---					
HGFAC	3083	broad.mit.edu	37	4	3443798	3443800	+	In_Frame_Del	DEL	CTG	CTG	-			TCGA-HZ-7924-01A-11D-2154-08	TCGA-HZ-7924-10A-01D-2154-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c4c1f4b1-d515-4a44-a975-38fa092bca24	cbb96d11-05d7-46a3-ace3-0b6010d95fb2	g.chr4:3443798_3443800delCTG	ENST00000382774.3	+	1	185_187	c.70_72delCTG	c.(70-72)del	p.L29del	HGFAC_ENST00000511533.1_In_Frame_Del_p.L29del	NM_001528.2	NP_001519.1	Q04756	HGFA_HUMAN	HGF activator	29					proteolysis	extracellular space	protein binding|serine-type endopeptidase activity			central_nervous_system(3)|cervix(1)|endometrium(4)|large_intestine(2)|lung(8)|upper_aerodigestive_tract(2)|urinary_tract(2)	22				UCEC - Uterine corpus endometrioid carcinoma (64;0.163)		CCTCCTCCTCCTGCTGCTGCTGC	0.714													7	189	---	---	---	---					
PROM1	8842	broad.mit.edu	37	4	15995680	15995680	+	Frame_Shift_Del	DEL	T	T	-			TCGA-HZ-7924-01A-11D-2154-08	TCGA-HZ-7924-10A-01D-2154-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c4c1f4b1-d515-4a44-a975-38fa092bca24	cbb96d11-05d7-46a3-ace3-0b6010d95fb2	g.chr4:15995680delT	ENST00000505450.1	-	15	2282	c.1670delA	c.(1669-1671)atfs	p.N557fs	PROM1_ENST00000540805.1_Frame_Shift_Del_p.N566fs|PROM1_ENST00000539194.1_Frame_Shift_Del_p.N566fs|PROM1_ENST00000510224.1_Frame_Shift_Del_p.N566fs|PROM1_ENST00000447510.2_Frame_Shift_Del_p.N566fs|PROM1_ENST00000508167.1_Frame_Shift_Del_p.N557fs|PROM1_ENST00000543373.1_Frame_Shift_Del_p.N557fs	NM_001145848.1	NP_001139320.1	O43490	PROM1_HUMAN	prominin 1	566					camera-type eye photoreceptor cell differentiation|photoreceptor cell maintenance|retina layer formation	apical plasma membrane|cell surface|integral to plasma membrane|microvillus membrane|photoreceptor outer segment membrane|plasma membrane	beta-actinin binding|cadherin binding			breast(2)|central_nervous_system(1)|endometrium(4)|haematopoietic_and_lymphoid_tissue(2)|kidney(4)|large_intestine(4)|liver(1)|lung(11)|ovary(3)|pancreas(1)|upper_aerodigestive_tract(2)	35						AGTGCCTCTATTTTTTTTGCA	0.428													8	474	---	---	---	---					
LAP3	51056	broad.mit.edu	37	4	17585226	17585226	+	Frame_Shift_Del	DEL	A	A	-			TCGA-HZ-7924-01A-11D-2154-08	TCGA-HZ-7924-10A-01D-2154-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c4c1f4b1-d515-4a44-a975-38fa092bca24	cbb96d11-05d7-46a3-ace3-0b6010d95fb2	g.chr4:17585226delA	ENST00000226299.4	+	5	774	c.500delA	c.(499-501)cafs	p.Q167fs	LAP3_ENST00000606142.1_Frame_Shift_Del_p.Q136fs	NM_015907.2	NP_056991.2	P28838	AMPL_HUMAN	leucine aminopeptidase 3	167					proteolysis	nucleus	aminopeptidase activity|magnesium ion binding|manganese ion binding|metalloexopeptidase activity|zinc ion binding			endometrium(4)|kidney(1)|large_intestine(4)|lung(10)|urinary_tract(1)	20						GACCTAAAGCAAAAAAAGAAG	0.547													7	559	---	---	---	---					
AASDH	132949	broad.mit.edu	37	4	57220269	57220269	+	Frame_Shift_Del	DEL	A	A	-	rs148777026		TCGA-HZ-7924-01A-11D-2154-08	TCGA-HZ-7924-10A-01D-2154-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c4c1f4b1-d515-4a44-a975-38fa092bca24	cbb96d11-05d7-46a3-ace3-0b6010d95fb2	g.chr4:57220269delA	ENST00000205214.6	-	8	1499	c.1319delT	c.(1318-1320)tgfs	p.L440fs	AASDH_ENST00000502617.1_Frame_Shift_Del_p.L440fs|AASDH_ENST00000451613.1_Frame_Shift_Del_p.L440fs|AASDH_ENST00000434343.2_Intron|AASDH_ENST00000513376.1_Frame_Shift_Del_p.L340fs|AASDH_ENST00000602986.1_Frame_Shift_Del_p.L287fs	NM_181806.2	NP_861522.2	Q4L235	ACSF4_HUMAN	aminoadipate-semialdehyde dehydrogenase	440					fatty acid metabolic process		acid-thiol ligase activity|acyl carrier activity|ATP binding|cofactor binding	p.?(1)		endometrium(2)|kidney(2)|large_intestine(8)|lung(17)|ovary(4)|prostate(3)|skin(2)|stomach(1)|urinary_tract(1)	40	Glioma(25;0.08)|all_neural(26;0.101)	all_hematologic(202;0.0017)				TTTTCGTCCCAAAAAAAAAAT	0.363													19	352	---	---	---	---					
RP11-584P21.2	0	broad.mit.edu	37	4	68312325	68312325	+	RNA	DEL	T	T	-			TCGA-HZ-7924-01A-11D-2154-08	TCGA-HZ-7924-10A-01D-2154-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c4c1f4b1-d515-4a44-a975-38fa092bca24	cbb96d11-05d7-46a3-ace3-0b6010d95fb2	g.chr4:68312325delT	ENST00000502400.1	-	0	34																											TAACCCAGACTTTTTTTTTTC	0.303													7	139	---	---	---	---					
C4orf26	152816	broad.mit.edu	37	4	76489680	76489680	+	Frame_Shift_Del	DEL	A	A	-			TCGA-HZ-7924-01A-11D-2154-08	TCGA-HZ-7924-10A-01D-2154-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c4c1f4b1-d515-4a44-a975-38fa092bca24	cbb96d11-05d7-46a3-ace3-0b6010d95fb2	g.chr4:76489680delA	ENST00000435974.2	+	3	486	c.468delA	c.(466-468)gcfs	p.A156fs	C4orf26_ENST00000311623.4_3'UTR	NM_001206981.1	NP_001193910.1	Q17RF5	CD026_HUMAN	chromosome 4 open reading frame 26	0						extracellular region				kidney(1)|large_intestine(4)|stomach(1)	6			Lung(101;0.0973)|LUSC - Lung squamous cell carcinoma(112;0.122)			ATACTGAAGCAAAAAAAAGCC	0.363													8	525	---	---	---	---					
PTPN13	0	broad.mit.edu	37	4	87622606	87622607	+	Frame_Shift_Ins	INS	-	-	A			TCGA-HZ-7924-01A-11D-2154-08	TCGA-HZ-7924-10A-01D-2154-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c4c1f4b1-d515-4a44-a975-38fa092bca24	cbb96d11-05d7-46a3-ace3-0b6010d95fb2	g.chr4:87622606_87622607insA	ENST00000436978.1	+	7	1327_1328	c.847_848insA	c.(847-849)aaafs	p.K283fs	PTPN13_ENST00000411767.2_Frame_Shift_Ins_p.K283fs|PTPN13_ENST00000511467.1_Frame_Shift_Ins_p.K283fs|PTPN13_ENST00000427191.2_Frame_Shift_Ins_p.K283fs|PTPN13_ENST00000316707.6_Frame_Shift_Ins_p.K283fs	NM_080683.2|NM_080685.2	NP_542414.1|NP_542416.1	Q12923	PTN13_HUMAN	protein tyrosine phosphatase, non-receptor type 13 (APO-1/CD95 (Fas)-associated phosphatase)	283						cytoplasm|cytoskeleton|plasma membrane	protein binding|protein tyrosine phosphatase activity			NS(4)|breast(3)|central_nervous_system(1)|cervix(2)|endometrium(6)|haematopoietic_and_lymphoid_tissue(1)|kidney(12)|large_intestine(23)|lung(24)|ovary(4)|prostate(3)|skin(7)|upper_aerodigestive_tract(1)|urinary_tract(2)	93		Hepatocellular(203;0.114)|all_hematologic(202;0.21)|Acute lymphoblastic leukemia(40;0.242)		OV - Ovarian serous cystadenocarcinoma(123;0.00082)		TAGTGGCCCAGAAAAAAAACCC	0.401													7	236	---	---	---	---					
HERC5	51191	broad.mit.edu	37	4	89381265	89381266	+	Frame_Shift_Ins	INS	-	-	A			TCGA-HZ-7924-01A-11D-2154-08	TCGA-HZ-7924-10A-01D-2154-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c4c1f4b1-d515-4a44-a975-38fa092bca24	cbb96d11-05d7-46a3-ace3-0b6010d95fb2	g.chr4:89381265_89381266insA	ENST00000264350.3	+	3	562_563	c.409_410insA	c.(409-411)aaafs	p.K137fs	HERC5_ENST00000508695.1_3'UTR	NM_016323.3	NP_057407.2	Q9UII4	HERC5_HUMAN	HECT and RLD domain containing E3 ubiquitin protein ligase 5	137					innate immune response|ISG15-protein conjugation|negative regulation of type I interferon production|protein ubiquitination involved in ubiquitin-dependent protein catabolic process|regulation of cyclin-dependent protein kinase activity|regulation of defense response to virus|response to virus	cytosol|perinuclear region of cytoplasm	ISG15 ligase activity|protein binding|ubiquitin-protein ligase activity			NS(2)|breast(3)|cervix(1)|endometrium(5)|kidney(3)|large_intestine(11)|liver(2)|lung(17)|ovary(4)|prostate(1)|skin(4)	53		Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;0.000209)		CATTTTACAAGAAAAAAAAATA	0.272													8	176	---	---	---	---					
NAP1L5	266812	broad.mit.edu	37	4	89618484	89618486	+	In_Frame_Del	DEL	TCC	TCC	-			TCGA-HZ-7924-01A-11D-2154-08	TCGA-HZ-7924-10A-01D-2154-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c4c1f4b1-d515-4a44-a975-38fa092bca24	cbb96d11-05d7-46a3-ace3-0b6010d95fb2	g.chr4:89618484_89618486delTCC	ENST00000323061.5	-	1	900_902	c.420_422delGGA	c.(418-423)gaa>ga	p.EE142del	HERC3_ENST00000543130.1_Intron|HERC3_ENST00000264345.3_Intron|HERC3_ENST00000402738.1_Intron	NM_153757.2	NP_715638.1	Q96NT1	NP1L5_HUMAN	nucleosome assembly protein 1-like 5	142	Glu-rich.				nucleosome assembly	nucleus	protein binding			endometrium(2)|lung(3)|skin(1)|upper_aerodigestive_tract(1)	7				OV - Ovarian serous cystadenocarcinoma(123;0.000181)		gtactcctcttcctcctcctcct	0.606													7	389	---	---	---	---					
CXXC4	80319	broad.mit.edu	37	4	105412465	105412467	+	In_Frame_Del	DEL	GCC	GCC	-			TCGA-HZ-7924-01A-11D-2154-08	TCGA-HZ-7924-10A-01D-2154-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c4c1f4b1-d515-4a44-a975-38fa092bca24	cbb96d11-05d7-46a3-ace3-0b6010d95fb2	g.chr4:105412465_105412467delGCC	ENST00000394767.2	-	2	943_945	c.493_495delGGC	c.(493-495)del	p.G165del	AC004053.1_ENST00000500179.1_RNA|CXXC4_ENST00000426831.1_5'UTR|CXXC4_ENST00000466963.1_Intron	NM_025212.2	NP_079488.2	Q9H2H0	CXXC4_HUMAN	CXXC finger protein 4	0	Interaction with DVL1 (By similarity).				negative regulation of Wnt receptor signaling pathway|Wnt receptor signaling pathway|zygotic specification of dorsal/ventral axis		DNA binding|PDZ domain binding|zinc ion binding			kidney(1)|large_intestine(1)|lung(5)|ovary(1)|upper_aerodigestive_tract(2)|urinary_tract(1)	11				OV - Ovarian serous cystadenocarcinoma(123;3.05e-08)		TGGTCCTgctgccgccgccgccg	0.695													11	334	---	---	---	---					
DNAH5	1767	broad.mit.edu	37	5	13919383	13919383	+	Frame_Shift_Del	DEL	T	T	-			TCGA-HZ-7924-01A-11D-2154-08	TCGA-HZ-7924-10A-01D-2154-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c4c1f4b1-d515-4a44-a975-38fa092bca24	cbb96d11-05d7-46a3-ace3-0b6010d95fb2	g.chr5:13919383delT	ENST00000265104.4	-	7	981	c.877delA	c.(877-879)gafs	p.R293fs		NM_001369.2	NP_001360.1	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	293	Stem (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			NS(6)|breast(14)|central_nervous_system(4)|cervix(2)|endometrium(23)|haematopoietic_and_lymphoid_tissue(8)|kidney(11)|large_intestine(85)|liver(1)|lung(129)|ovary(16)|pancreas(2)|prostate(5)|skin(48)|stomach(5)|upper_aerodigestive_tract(11)|urinary_tract(8)	378	Lung NSC(4;0.00476)					TTGGAGAGTCTTTTTTTCCAG	0.517									Kartagener syndrome				8	1278	---	---	---	---					
CDH10	1008	broad.mit.edu	37	5	24492973	24492973	+	Frame_Shift_Del	DEL	A	A	-			TCGA-HZ-7924-01A-11D-2154-08	TCGA-HZ-7924-10A-01D-2154-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c4c1f4b1-d515-4a44-a975-38fa092bca24	cbb96d11-05d7-46a3-ace3-0b6010d95fb2	g.chr5:24492973delA	ENST00000264463.4	-	10	2084	c.1577delT	c.(1576-1578)tcfs	p.F526fs	CDH10_ENST00000502921.1_5'UTR	NM_006727.3	NP_006718.2	Q9Y6N8	CAD10_HUMAN	cadherin 10, type 2 (T2-cadherin)	526	Cadherin 5.				adherens junction organization|cell junction assembly|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			NS(1)|breast(8)|central_nervous_system(2)|cervix(1)|endometrium(9)|kidney(2)|large_intestine(29)|lung(111)|ovary(6)|pancreas(6)|skin(4)|stomach(2)|upper_aerodigestive_tract(4)	185				STAD - Stomach adenocarcinoma(35;0.0556)		AGCTAAACTGAAAAAAAATTT	0.313										HNSCC(23;0.051)			12	1234	---	---	---	---					
PAM	5066	broad.mit.edu	37	5	102309949	102309949	+	Frame_Shift_Del	DEL	A	A	-			TCGA-HZ-7924-01A-11D-2154-08	TCGA-HZ-7924-10A-01D-2154-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c4c1f4b1-d515-4a44-a975-38fa092bca24	cbb96d11-05d7-46a3-ace3-0b6010d95fb2	g.chr5:102309949delA	ENST00000438793.3	+	14	1762	c.1292delA	c.(1291-1293)cafs	p.Q431fs	PAM_ENST00000274392.9_Frame_Shift_Del_p.Q334fs|PAM_ENST00000348126.2_Intron|PAM_ENST00000379787.4_5'UTR|PAM_ENST00000304400.7_Frame_Shift_Del_p.Q431fs|PAM_ENST00000455264.2_Frame_Shift_Del_p.Q431fs|PAM_ENST00000346918.2_Frame_Shift_Del_p.Q431fs	NM_000919.3|NM_001177306.1|NM_138766.2	NP_000910.2|NP_001170777.1|NP_620121.1	P19021	AMD_HUMAN	peptidylglycine alpha-amidating monooxygenase	431	Peptidylglycine alpha-hydroxylating monooxygenase (By similarity).				peptide metabolic process|protein modification process	extracellular region|integral to membrane|stored secretory granule	L-ascorbic acid binding|peptidylamidoglycolate lyase activity|peptidylglycine monooxygenase activity|protein binding			endometrium(2)|kidney(2)|large_intestine(10)|lung(8)|prostate(2)|upper_aerodigestive_tract(1)	25		all_cancers(142;3.12e-07)|all_epithelial(76;3.48e-10)|Prostate(80;0.00914)|Lung NSC(167;0.0213)|Ovarian(225;0.024)|Colorectal(57;0.0251)|all_lung(232;0.0284)		Epithelial(69;1.1e-13)|COAD - Colon adenocarcinoma(37;0.0127)	Vitamin C(DB00126)	AATGTAGTCCAAAAAAAGGAT	0.423													7	508	---	---	---	---					
CSNK1G3	1456	broad.mit.edu	37	5	122881495	122881495	+	Frame_Shift_Del	DEL	A	A	-			TCGA-HZ-7924-01A-11D-2154-08	TCGA-HZ-7924-10A-01D-2154-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c4c1f4b1-d515-4a44-a975-38fa092bca24	cbb96d11-05d7-46a3-ace3-0b6010d95fb2	g.chr5:122881495delA	ENST00000395412.1	+	2	857	c.138delA	c.(136-138)ggfs	p.G46fs	CSNK1G3_ENST00000361991.2_Frame_Shift_Del_p.G46fs|CSNK1G3_ENST00000512718.3_Intron|CSNK1G3_ENST00000521364.1_Frame_Shift_Del_p.G46fs|CSNK1G3_ENST00000360683.2_Frame_Shift_Del_p.G46fs|CSNK1G3_ENST00000345990.4_Frame_Shift_Del_p.G46fs|CSNK1G3_ENST00000510842.2_Frame_Shift_Del_p.G46fs|CSNK1G3_ENST00000395411.1_Frame_Shift_Del_p.G46fs|CSNK1G3_ENST00000511130.2_Intron|CSNK1G3_ENST00000508708.1_3'UTR	NM_001044723.1	NP_001038188.1	Q9Y6M4	KC1G3_HUMAN	casein kinase 1, gamma 3	46	Protein kinase.				Wnt receptor signaling pathway	cytoplasm	ATP binding|protein serine/threonine kinase activity			autonomic_ganglia(1)|breast(1)|endometrium(2)|kidney(2)|large_intestine(3)|liver(1)|lung(3)|prostate(1)|skin(1)	15		all_cancers(142;0.0156)|Prostate(80;0.0322)|Lung NSC(810;0.245)	KIRC - Kidney renal clear cell carcinoma(527;0.165)|Kidney(363;0.229)	OV - Ovarian serous cystadenocarcinoma(64;0.000121)|Epithelial(69;0.000227)|all cancers(49;0.00176)		TTAGAGTTGGAAAAAAAATTG	0.363													8	536	---	---	---	---					
SLC22A4	6583	broad.mit.edu	37	5	131676327	131676327	+	Frame_Shift_Del	DEL	T	T	-	rs72552721		TCGA-HZ-7924-01A-11D-2154-08	TCGA-HZ-7924-10A-01D-2154-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c4c1f4b1-d515-4a44-a975-38fa092bca24	cbb96d11-05d7-46a3-ace3-0b6010d95fb2	g.chr5:131676327delT	ENST00000200652.3	+	9	1688	c.1514delT	c.(1513-1515)ctfs	p.L505fs	AC034220.3_ENST00000437091.1_RNA|AC034220.3_ENST00000417795.1_RNA	NM_003059.2	NP_003050.2	Q9H015	S22A4_HUMAN	solute carrier family 22 (organic cation/zwitterion transporter), member 4	505					body fluid secretion|sodium ion transport	apical plasma membrane|integral to plasma membrane|mitochondrion	ATP binding|carnitine transporter activity|cation:cation antiporter activity|PDZ domain binding|secondary active organic cation transmembrane transporter activity|symporter activity	p.E509fs*1(1)		endometrium(1)|kidney(3)|large_intestine(2)|lung(8)|ovary(1)|urinary_tract(1)	16		all_cancers(142;0.0752)|Breast(839;0.198)	KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)		L-Carnitine(DB00583)	ATCCTCACCCTTTTTTTCCCT	0.418													7	1128	---	---	---	---					
PCDHB4	0	broad.mit.edu	37	5	140502486	140502487	+	Frame_Shift_Ins	INS	-	-	A			TCGA-HZ-7924-01A-11D-2154-08	TCGA-HZ-7924-10A-01D-2154-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c4c1f4b1-d515-4a44-a975-38fa092bca24	cbb96d11-05d7-46a3-ace3-0b6010d95fb2	g.chr5:140502486_140502487insA	ENST00000194152.1	+	1	906_907	c.906_907insA	c.(904-909)ttaaaafs	p.LK302fs		NM_018938.2	NP_061761.1	Q9Y5E5	PCDB4_HUMAN		302	Cadherin 3.				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	cytoplasm|integral to plasma membrane|intermediate filament cytoskeleton	calcium ion binding	p.K305fs*12(1)		autonomic_ganglia(1)|breast(2)|endometrium(4)|kidney(2)|large_intestine(12)|lung(35)|ovary(1)|pancreas(1)|prostate(1)|skin(4)|upper_aerodigestive_tract(3)|urinary_tract(1)	67			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			AAATACTGTTGAAAAAAAAATT	0.366													13	928	---	---	---	---					
SPRY4	81848	broad.mit.edu	37	5	141694361	141694363	+	In_Frame_Del	DEL	TGC	TGC	-			TCGA-HZ-7924-01A-11D-2154-08	TCGA-HZ-7924-10A-01D-2154-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c4c1f4b1-d515-4a44-a975-38fa092bca24	cbb96d11-05d7-46a3-ace3-0b6010d95fb2	g.chr5:141694361_141694363delTGC	ENST00000344120.4	-	3	566_568	c.380_382delGCA	c.(379-384)aca>a	p.ST127del	SPRY4_ENST00000434127.2_In_Frame_Del_p.ST104del	NM_030964.3	NP_112226.2	Q9C004	SPY4_HUMAN	sprouty homolog 4 (Drosophila)	104					multicellular organismal development	cytoplasm|ruffle membrane	protein binding			breast(1)|endometrium(3)|haematopoietic_and_lymphoid_tissue(3)|large_intestine(3)|lung(7)|ovary(1)	18		all_hematologic(541;0.118)	KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TCAGAGGATGTGCTGCTGCTGCT	0.660									Testicular Cancer, Familial Clustering of				7	497	---	---	---	---					
PPARGC1B	133522	broad.mit.edu	37	5	149216457	149216459	+	In_Frame_Del	DEL	GGA	GGA	-			TCGA-HZ-7924-01A-11D-2154-08	TCGA-HZ-7924-10A-01D-2154-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c4c1f4b1-d515-4a44-a975-38fa092bca24	cbb96d11-05d7-46a3-ace3-0b6010d95fb2	g.chr5:149216457_149216459delGGA	ENST00000309241.5	+	8	2471_2473	c.2439_2441delGGA	c.(2437-2442)ggg>gg	p.GE813del	PPARGC1B_ENST00000360453.4_In_Frame_Del_p.GE774del|PPARGC1B_ENST00000403750.1_In_Frame_Del_p.GE749del|PPARGC1B_ENST00000394320.3_In_Frame_Del_p.GE813del	NM_133263.3	NP_573570.3	Q86YN6	PRGC2_HUMAN	peroxisome proliferator-activated receptor gamma, coactivator 1 beta	813	Glu-rich.				estrogen receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter	mediator complex	AF-2 domain binding|estrogen receptor binding|ligand-dependent nuclear receptor transcription coactivator activity|nucleotide binding|receptor activator activity|RNA binding|RNA polymerase II transcription cofactor activity			NS(1)|breast(1)|endometrium(1)|kidney(3)|large_intestine(1)|liver(2)|lung(15)|ovary(3)|prostate(2)|stomach(1)	30			KIRC - Kidney renal clear cell carcinoma(527;0.000962)|Kidney(363;0.00147)			aggaagaaggggaggaggaggag	0.606													9	481	---	---	---	---					
TIMD4	91937	broad.mit.edu	37	5	156378745	156378747	+	In_Frame_Del	DEL	TTG	TTG	-			TCGA-HZ-7924-01A-11D-2154-08	TCGA-HZ-7924-10A-01D-2154-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c4c1f4b1-d515-4a44-a975-38fa092bca24	cbb96d11-05d7-46a3-ace3-0b6010d95fb2	g.chr5:156378745_156378747delTTG	ENST00000274532.2	-	3	511_513	c.455_457delCAA	c.(454-459)agc>a	p.TS152del	TIMD4_ENST00000407087.3_In_Frame_Del_p.TS152del	NM_138379.2	NP_612388.2	Q96H15	TIMD4_HUMAN	T-cell immunoglobulin and mucin domain containing 4	152	Thr-rich.					integral to membrane				NS(1)|central_nervous_system(1)|endometrium(4)|haematopoietic_and_lymphoid_tissue(1)|large_intestine(3)|lung(23)|ovary(2)|skin(2)	37	Renal(175;0.00488)	Medulloblastoma(196;0.0523)|all_neural(177;0.21)	Kidney(164;0.000171)|KIRC - Kidney renal clear cell carcinoma(164;0.000785)			GTGGTGGGGCTTGTTGTTGTTGT	0.537													15	1469	---	---	---	---					
CYP21A1P	0	broad.mit.edu	37	6	31975223	31975224	+	RNA	INS	-	-	T			TCGA-HZ-7924-01A-11D-2154-08	TCGA-HZ-7924-10A-01D-2154-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c4c1f4b1-d515-4a44-a975-38fa092bca24	cbb96d11-05d7-46a3-ace3-0b6010d95fb2	g.chr6:31975223_31975224insT	ENST00000342991.6	+	0	1346_1347					NR_040090.1		Q5ST44	Q5ST44_HUMAN									electron carrier activity|heme binding|monooxygenase activity|oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen										CTGGGCCGTGGTTTTTTTTGCT	0.614													7	819	---	---	---	---					
RING1	6015	broad.mit.edu	37	6	33178989	33178990	+	Frame_Shift_Ins	INS	-	-	G			TCGA-HZ-7924-01A-11D-2154-08	TCGA-HZ-7924-10A-01D-2154-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c4c1f4b1-d515-4a44-a975-38fa092bca24	cbb96d11-05d7-46a3-ace3-0b6010d95fb2	g.chr6:33178989_33178990insG	ENST00000374656.4	+	5	718_719	c.510_511insG	c.(508-513)agggggfs	p.RG170fs	RING1_ENST00000478431.1_3'UTR	NM_002931.3	NP_002922.2	Q06587	RING1_HUMAN	ring finger protein 1	170	Necessary for transcriptional repression (By similarity).				histone H2A monoubiquitination|negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nuclear speck|PcG protein complex	protein binding|zinc ion binding			endometrium(5)|large_intestine(1)|lung(3)|ovary(2)|prostate(2)|skin(4)	17						CAACGATGAGTGGGGGGGAAGG	0.619													7	1034	---	---	---	---					
TREML2	79865	broad.mit.edu	37	6	41168714	41168716	+	In_Frame_Del	DEL	CAG	CAG	-			TCGA-HZ-7924-01A-11D-2154-08	TCGA-HZ-7924-10A-01D-2154-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c4c1f4b1-d515-4a44-a975-38fa092bca24	cbb96d11-05d7-46a3-ace3-0b6010d95fb2	g.chr6:41168714_41168716delCAG	ENST00000483722.1	-	1	216_218	c.31_33delCTG	c.(31-33)del	p.L11del		NM_024807.2	NP_079083.2	Q5T2D2	TRML2_HUMAN	triggering receptor expressed on myeloid cells-like 2	11					T cell activation	cell surface|integral to membrane|plasma membrane	protein binding|receptor activity			breast(1)|central_nervous_system(1)|large_intestine(1)|lung(13)|ovary(1)|prostate(1)	18	Ovarian(28;0.0418)|Colorectal(47;0.196)					CCTGTGGCCACAGCAGCAGCAGC	0.631													9	192	---	---	---	---					
ZNF318	24149	broad.mit.edu	37	6	43323502	43323502	+	Frame_Shift_Del	DEL	T	T	-			TCGA-HZ-7924-01A-11D-2154-08	TCGA-HZ-7924-10A-01D-2154-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c4c1f4b1-d515-4a44-a975-38fa092bca24	cbb96d11-05d7-46a3-ace3-0b6010d95fb2	g.chr6:43323502delT	ENST00000361428.2	-	4	1647	c.1570delA	c.(1570-1572)ggfs	p.R526fs	ZNF318_ENST00000318149.3_Frame_Shift_Del_p.R526fs	NM_014345.2	NP_055160.2	Q5VUA4	ZN318_HUMAN	zinc finger protein 318	526					meiosis|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	nucleic acid binding|zinc ion binding			autonomic_ganglia(1)|breast(8)|central_nervous_system(1)|cervix(1)|endometrium(6)|haematopoietic_and_lymphoid_tissue(1)|kidney(4)|large_intestine(11)|lung(21)|ovary(3)|prostate(1)|skin(1)|stomach(1)|urinary_tract(1)	61			Colorectal(64;0.00245)|COAD - Colon adenocarcinoma(64;0.00536)|all cancers(41;0.0171)|OV - Ovarian serous cystadenocarcinoma(102;0.0579)			CTACGTCGCCTTTTTTCCTGT	0.493													13	1894	---	---	---	---					
RUNX2	860	broad.mit.edu	37	6	45390446	45390448	+	In_Frame_Del	DEL	CAG	CAG	-			TCGA-HZ-7924-01A-11D-2154-08	TCGA-HZ-7924-10A-01D-2154-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c4c1f4b1-d515-4a44-a975-38fa092bca24	cbb96d11-05d7-46a3-ace3-0b6010d95fb2	g.chr6:45390446_45390448delCAG	ENST00000371438.1	+	2	533_535	c.175_177delCAG	c.(175-177)del	p.Q71del	RUNX2_ENST00000541979.1_In_Frame_Del_p.Q139del|RUNX2_ENST00000371436.6_In_Frame_Del_p.Q71del|RUNX2_ENST00000465038.2_In_Frame_Del_p.Q71del|RUNX2_ENST00000359524.5_In_Frame_Del_p.Q57del|RUNX2_ENST00000371432.3_In_Frame_Del_p.Q57del|RUNX2_ENST00000352853.5_In_Frame_Del_p.Q139del|RUNX2_ENST00000576263.1_In_Frame_Del_p.Q71del	NM_001024630.3	NP_001019801.3	Q13950	RUNX2_HUMAN	runt-related transcription factor 2	71	Poly-Gln.				negative regulation of transcription, DNA-dependent|osteoblast differentiation|positive regulation of transcription, DNA-dependent	nucleus	ATP binding|DNA binding|protein binding|sequence-specific DNA binding transcription factor activity			breast(2)|endometrium(2)|kidney(1)|large_intestine(5)|liver(1)|lung(18)|ovary(2)|prostate(1)|skin(1)|upper_aerodigestive_tract(1)	34						gcagcagcaacagcagcagcagc	0.729													7	181	---	---	---	---					
KLHL31	401265	broad.mit.edu	37	6	53519759	53519759	+	Frame_Shift_Del	DEL	T	T	-	rs72352601		TCGA-HZ-7924-01A-11D-2154-08	TCGA-HZ-7924-10A-01D-2154-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c4c1f4b1-d515-4a44-a975-38fa092bca24	cbb96d11-05d7-46a3-ace3-0b6010d95fb2	g.chr6:53519759delT	ENST00000370905.3	-	2	452	c.312delA	c.(310-312)aafs	p.K104fs	KLHL31_ENST00000407079.1_Frame_Shift_Del_p.K104fs	NM_001003760.4	NP_001003760.2	Q9H511	KLH31_HUMAN	kelch-like family member 31	104	BTB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent					autonomic_ganglia(1)|endometrium(3)|kidney(3)|large_intestine(2)|lung(7)|ovary(1)|prostate(3)	20	Lung NSC(77;0.0158)					TTGACGGGTCTTTTTTTAGGA	0.423													7	784	---	---	---	---					
COX7A2	1347	broad.mit.edu	37	6	75950901	75950901	+	Frame_Shift_Del	DEL	T	T	-			TCGA-HZ-7924-01A-11D-2154-08	TCGA-HZ-7924-10A-01D-2154-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c4c1f4b1-d515-4a44-a975-38fa092bca24	cbb96d11-05d7-46a3-ace3-0b6010d95fb2	g.chr6:75950901delT	ENST00000370081.2	-	3	505	c.195delA	c.(193-195)aafs	p.K65fs	COX7A2_ENST00000472311.2_Frame_Shift_Del_p.K33fs|COX7A2_ENST00000460985.1_Intron|COX7A2_ENST00000509698.1_Frame_Shift_Del_p.K33fs|COX7A2_ENST00000370089.2_Frame_Shift_Del_p.K65fs|COX7A2_ENST00000230459.4_Frame_Shift_Del_p.K33fs			P14406	CX7A2_HUMAN	cytochrome c oxidase subunit VIIa polypeptide 2 (liver)	33						mitochondrial respiratory chain	cytochrome-c oxidase activity|electron carrier activity			kidney(2)|lung(1)	3						CCTGGAACAGTTTTTGCTTCT	0.343													7	1033	---	---	---	---					
PHIP	55023	broad.mit.edu	37	6	79655961	79655961	+	Frame_Shift_Del	DEL	T	T	-			TCGA-HZ-7924-01A-11D-2154-08	TCGA-HZ-7924-10A-01D-2154-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c4c1f4b1-d515-4a44-a975-38fa092bca24	cbb96d11-05d7-46a3-ace3-0b6010d95fb2	g.chr6:79655961delT	ENST00000275034.4	-	38	4554	c.4387delA	c.(4387-4389)ggfs	p.R1463fs	PHIP_ENST00000479165.1_5'UTR	NM_017934.5	NP_060404.3	Q8WWQ0	PHIP_HUMAN	pleckstrin homology domain interacting protein	1463					insulin receptor signaling pathway|negative regulation of apoptosis|positive regulation of cell proliferation|positive regulation of insulin-like growth factor receptor signaling pathway|positive regulation of mitosis	nucleus	insulin receptor binding			NS(1)|breast(1)|central_nervous_system(2)|endometrium(10)|kidney(4)|large_intestine(20)|lung(20)|ovary(1)|prostate(2)|skin(2)|upper_aerodigestive_tract(2)|urinary_tract(3)	68		all_cancers(76;0.00125)|Acute lymphoblastic leukemia(125;1.1e-05)|all_hematologic(105;0.00117)|all_epithelial(107;0.219)		BRCA - Breast invasive adenocarcinoma(397;0.231)		TTTAAGATCCTTTTTTTCCTT	0.358													8	791	---	---	---	---					
TTK	7272	broad.mit.edu	37	6	80751896	80751897	+	Frame_Shift_Ins	INS	-	-	A			TCGA-HZ-7924-01A-11D-2154-08	TCGA-HZ-7924-10A-01D-2154-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c4c1f4b1-d515-4a44-a975-38fa092bca24	cbb96d11-05d7-46a3-ace3-0b6010d95fb2	g.chr6:80751896_80751897insA	ENST00000509894.1	+	22	3377_3378	c.2548_2549insA	c.(2548-2550)aaafs	p.K850fs	TTK_ENST00000230510.3_Frame_Shift_Ins_p.K850fs|TTK_ENST00000369798.2_Frame_Shift_Ins_p.K851fs			P33981	TTK_HUMAN	TTK protein kinase	851					mitotic cell cycle spindle assembly checkpoint|mitotic spindle organization|positive regulation of cell proliferation|positive regulation of pathway-restricted SMAD protein phosphorylation	spindle	ATP binding|identical protein binding|protein serine/threonine kinase activity|protein tyrosine kinase activity	p.R838fs*4(3)|p.R838fs*>4(2)|p.R838fs*>5(1)		endometrium(4)|kidney(2)|large_intestine(12)|lung(22)|ovary(7)|pancreas(1)|prostate(1)|stomach(3)|urinary_tract(1)	53		all_cancers(76;0.00177)|Acute lymphoblastic leukemia(125;1.24e-05)|all_hematologic(105;0.00223)|all_epithelial(107;0.2)		BRCA - Breast invasive adenocarcinoma(397;0.0321)		CAAGACTTTTGAAAAAAAAAGG	0.302													7	398	---	---	---	---					
CYB5R4	51167	broad.mit.edu	37	6	84634230	84634231	+	Frame_Shift_Ins	INS	-	-	A			TCGA-HZ-7924-01A-11D-2154-08	TCGA-HZ-7924-10A-01D-2154-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c4c1f4b1-d515-4a44-a975-38fa092bca24	cbb96d11-05d7-46a3-ace3-0b6010d95fb2	g.chr6:84634230_84634231insA	ENST00000369681.4	+	10	873_874	c.733_734insA	c.(733-735)aaafs	p.K245fs		NM_016230.3	NP_057314.2	Q7L1T6	NB5R4_HUMAN	cytochrome b5 reductase 4	245	CS.				cell development|detection of oxygen|generation of precursor metabolites and energy|glucose homeostasis|insulin secretion|response to antibiotic|superoxide metabolic process	endoplasmic reticulum|perinuclear region of cytoplasm	cytochrome-b5 reductase activity|heme binding|NAD(P)H oxidase activity			breast(3)|endometrium(2)|kidney(2)|large_intestine(7)|lung(7)|prostate(1)|upper_aerodigestive_tract(1)	23		all_cancers(76;7e-07)|Acute lymphoblastic leukemia(125;2.69e-07)|all_hematologic(105;0.000151)|all_epithelial(107;0.00128)		BRCA - Breast invasive adenocarcinoma(397;0.0871)		GATTGTTCTACAAAAAAAAGAG	0.337													10	454	---	---	---	---					
SYNCRIP	10492	broad.mit.edu	37	6	86332353	86332354	+	Frame_Shift_Ins	INS	-	-	T			TCGA-HZ-7924-01A-11D-2154-08	TCGA-HZ-7924-10A-01D-2154-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c4c1f4b1-d515-4a44-a975-38fa092bca24	cbb96d11-05d7-46a3-ace3-0b6010d95fb2	g.chr6:86332353_86332354insT	ENST00000355238.6	-	8	1060_1061	c.854_855insA	c.(853-855)aagfs	p.K285fs	SYNCRIP_ENST00000369622.3_Frame_Shift_Ins_p.K285fs	NM_001159673.1|NM_001159674.1|NM_001159676.1|NM_001159677.1|NM_001253771.1	NP_001153145.1|NP_001153146.1|NP_001153148.1|NP_001153149.1|NP_001240700.1	O60506	HNRPQ_HUMAN	synaptotagmin binding, cytoplasmic RNA interacting protein	285	RRM 2.				CRD-mediated mRNA stabilization|interspecies interaction between organisms	catalytic step 2 spliceosome|CRD-mediated mRNA stability complex|endoplasmic reticulum|histone pre-mRNA 3'end processing complex|microsome|nucleoplasm	nucleotide binding|protein binding			autonomic_ganglia(1)|breast(2)|central_nervous_system(4)|endometrium(3)|kidney(2)|large_intestine(5)|liver(1)|lung(10)|ovary(2)|skin(2)|upper_aerodigestive_tract(1)	33		all_cancers(76;0.000137)|Acute lymphoblastic leukemia(125;3.66e-08)|Prostate(29;8.2e-07)|all_hematologic(105;8.61e-05)|all_epithelial(107;0.0297)		BRCA - Breast invasive adenocarcinoma(108;0.0389)		AAAAGCCTCTGTTTTTTTTCTT	0.411													11	928	---	---	---	---					
GABRR2	2570	broad.mit.edu	37	6	89975427	89975429	+	In_Frame_Del	DEL	AAG	AAG	-			TCGA-HZ-7924-01A-11D-2154-08	TCGA-HZ-7924-10A-01D-2154-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c4c1f4b1-d515-4a44-a975-38fa092bca24	cbb96d11-05d7-46a3-ace3-0b6010d95fb2	g.chr6:89975427_89975429delAAG	ENST00000402938.3	-	7	925_927	c.792_794delCTT	c.(790-795)ttg>tt	p.FL264del	GABRR2_ENST00000602399.1_In_Frame_Del_p.FL289del			P28476	GBRR2_HUMAN	gamma-aminobutyric acid (GABA) A receptor, rho 2	289					synaptic transmission	cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	chloride channel activity|extracellular ligand-gated ion channel activity|GABA-A receptor activity			central_nervous_system(1)|endometrium(2)|large_intestine(5)|lung(10)|prostate(2)|urinary_tract(1)	21		all_cancers(76;1.67e-09)|Prostate(29;1.16e-10)|Acute lymphoblastic leukemia(125;1.49e-10)|all_hematologic(105;7.77e-07)|all_epithelial(107;2.51e-05)|Lung NSC(302;0.238)		BRCA - Breast invasive adenocarcinoma(108;0.0158)		TGTTTGGAGCAAGAAGAAGAAGA	0.517													8	339	---	---	---	---					
FOXO3	2309	broad.mit.edu	37	6	108985176	108985177	+	Frame_Shift_Ins	INS	-	-	G	rs34133353		TCGA-HZ-7924-01A-11D-2154-08	TCGA-HZ-7924-10A-01D-2154-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c4c1f4b1-d515-4a44-a975-38fa092bca24	cbb96d11-05d7-46a3-ace3-0b6010d95fb2	g.chr6:108985176_108985177insG	ENST00000406360.1	+	2	1483_1484	c.1140_1141insG	c.(1138-1143)gaggctfs	p.A381fs	FOXO3_ENST00000343882.6_Frame_Shift_Ins_p.A381fs|FOXO3_ENST00000540898.1_Frame_Shift_Ins_p.A161fs	NM_001455.3	NP_001446.1	O43524	FOXO3_HUMAN	forkhead box O3	381					antral ovarian follicle growth|apoptosis|embryo development|glucose homeostasis|induction of apoptosis|initiation of primordial ovarian follicle growth|insulin receptor signaling pathway|negative regulation of transcription from RNA polymerase II promoter|nerve growth factor receptor signaling pathway|oocyte maturation|ovulation from ovarian follicle|pattern specification process|phosphatidylinositol-mediated signaling|positive regulation of erythrocyte differentiation|positive regulation of transcription from RNA polymerase II promoter|regulation of cell proliferation|regulation of sequence-specific DNA binding transcription factor activity|tissue development	cytosol|transcription factor complex	DNA bending activity|double-stranded DNA binding|promoter binding|protein kinase binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription factor binding			central_nervous_system(5)|endometrium(1)|kidney(1)|large_intestine(2)|lung(6)|ovary(2)|prostate(4)|skin(1)|upper_aerodigestive_tract(3)|urinary_tract(1)	26		all_cancers(87;1.78e-07)|Acute lymphoblastic leukemia(125;2.66e-08)|all_hematologic(75;1.13e-06)|all_epithelial(87;3.88e-05)|Colorectal(196;0.0294)|all_lung(197;0.0487)|Lung SC(18;0.152)		Epithelial(106;0.000759)|all cancers(137;0.00121)|BRCA - Breast invasive adenocarcinoma(108;0.00163)|OV - Ovarian serous cystadenocarcinoma(136;0.00718)		ATCTGAATGATGGGCTGACTGA	0.574													8	275	---	---	---	---					
OLIG3	167826	broad.mit.edu	37	6	137815210	137815212	+	In_Frame_Del	DEL	TGG	TGG	-			TCGA-HZ-7924-01A-11D-2154-08	TCGA-HZ-7924-10A-01D-2154-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c4c1f4b1-d515-4a44-a975-38fa092bca24	cbb96d11-05d7-46a3-ace3-0b6010d95fb2	g.chr6:137815210_137815212delTGG	ENST00000367734.2	-	1	319_321	c.96_98delCCA	c.(94-99)cag>ca	p.HQ32del		NM_175747.2	NP_786923.1	Q7RTU3	OLIG3_HUMAN	oligodendrocyte transcription factor 3	32	Poly-His.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding	p.Q33K(1)		endometrium(2)|large_intestine(2)|lung(5)|ovary(1)|upper_aerodigestive_tract(1)	11	Breast(32;0.165)|Colorectal(23;0.24)			GBM - Glioblastoma multiforme(68;0.00161)|OV - Ovarian serous cystadenocarcinoma(155;0.00447)		ACGGCTCTCCtggtggtggtggt	0.596													9	525	---	---	---	---					
RP11-440G9.1	0	broad.mit.edu	37	6	142860298	142860299	+	RNA	INS	-	-	T	rs143051118	by1000genomes	TCGA-HZ-7924-01A-11D-2154-08	TCGA-HZ-7924-10A-01D-2154-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c4c1f4b1-d515-4a44-a975-38fa092bca24	cbb96d11-05d7-46a3-ace3-0b6010d95fb2	g.chr6:142860298_142860299insT	ENST00000447311.1	-	0	364					NR_027312.1																						ttaggccagtatttttttttta	0.470													10	21	---	---	---	---					
MTHFD1L	25902	broad.mit.edu	37	6	151358163	151358164	+	Frame_Shift_Ins	INS	-	-	A			TCGA-HZ-7924-01A-11D-2154-08	TCGA-HZ-7924-10A-01D-2154-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c4c1f4b1-d515-4a44-a975-38fa092bca24	cbb96d11-05d7-46a3-ace3-0b6010d95fb2	g.chr6:151358163_151358164insA	ENST00000367321.3	+	26	3031_3032	c.2757_2758insA	c.(2755-2760)gaaaaafs	p.EK919fs		NM_001242767.1|NM_001242768.1|NM_015440.4	NP_001229696.1|NP_001229697.1|NP_056255.2	Q6UB35	C1TM_HUMAN	methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like	919	Formyltetrahydrofolate synthetase.				folic acid-containing compound biosynthetic process|formate metabolic process|one-carbon metabolic process|tetrahydrofolate metabolic process	mitochondrion	ATP binding|formate-tetrahydrofolate ligase activity|protein homodimerization activity	p.L914fs*14(1)		central_nervous_system(1)|endometrium(1)|kidney(1)|large_intestine(12)|lung(8)|ovary(3)|prostate(1)|upper_aerodigestive_tract(2)	29		Ovarian(120;0.128)		OV - Ovarian serous cystadenocarcinoma(155;8.7e-12)		ACCAACCTGACAAAAAAGGTGT	0.480													12	523	---	---	---	---					
MLLT4	4301	broad.mit.edu	37	6	168317900	168317900	+	Frame_Shift_Del	DEL	T	T	-			TCGA-HZ-7924-01A-11D-2154-08	TCGA-HZ-7924-10A-01D-2154-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c4c1f4b1-d515-4a44-a975-38fa092bca24	cbb96d11-05d7-46a3-ace3-0b6010d95fb2	g.chr6:168317900delT	ENST00000366806.2	+	19	2818	c.2676delT	c.(2674-2676)ccfs	p.P892fs	MLLT4_ENST00000392112.1_Frame_Shift_Del_p.P876fs|MLLT4_ENST00000400822.3_Frame_Shift_Del_p.P891fs|MLLT4_ENST00000344191.4_Frame_Shift_Del_p.P892fs|MLLT4_ENST00000447894.2_Frame_Shift_Del_p.P892fs|MLLT4_ENST00000392108.3_Frame_Shift_Del_p.P892fs|MLLT4_ENST00000351017.4_Frame_Shift_Del_p.P899fs			P55196	AFAD_HUMAN	myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 4	892	Dilute.				adherens junction organization|cell adhesion|cell junction assembly|cell-cell signaling|signal transduction	adherens junction|cell-cell junction|cytosol|nucleus	protein C-terminus binding			breast(4)|central_nervous_system(1)|cervix(1)|endometrium(6)|kidney(13)|large_intestine(10)|lung(19)|ovary(2)|pancreas(1)|prostate(2)|skin(1)|stomach(2)|upper_aerodigestive_tract(2)|urinary_tract(1)	65		Breast(66;1.07e-05)|Ovarian(120;0.024)		Epithelial(4;2.38e-32)|OV - Ovarian serous cystadenocarcinoma(33;9.99e-23)|BRCA - Breast invasive adenocarcinoma(4;1.2e-11)|GBM - Glioblastoma multiforme(31;0.00117)		CTGATGAGCCTTTTATCCCAA	0.398			T	MLL	AL								7	885	---	---	---	---					
STK31	56164	broad.mit.edu	37	7	23775340	23775341	+	Frame_Shift_Ins	INS	-	-	A			TCGA-HZ-7924-01A-11D-2154-08	TCGA-HZ-7924-10A-01D-2154-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c4c1f4b1-d515-4a44-a975-38fa092bca24	cbb96d11-05d7-46a3-ace3-0b6010d95fb2	g.chr7:23775340_23775341insA	ENST00000354639.3	+	7	1062_1063	c.598_599insA	c.(598-600)aaafs	p.K200fs	STK31_ENST00000428484.1_Frame_Shift_Ins_p.K200fs|STK31_ENST00000405627.3_3'UTR|STK31_ENST00000433467.2_Frame_Shift_Ins_p.K223fs|STK31_ENST00000355870.3_Frame_Shift_Ins_p.K223fs	NM_001260504.1|NM_032944.3	NP_001247433.1|NP_116562.2	Q9BXU1	STK31_HUMAN	serine/threonine kinase 31	223							ATP binding|nucleic acid binding|protein serine/threonine kinase activity	p.E223V(1)		breast(1)|endometrium(3)|haematopoietic_and_lymphoid_tissue(1)|kidney(4)|large_intestine(12)|lung(31)|ovary(2)|prostate(1)|skin(7)|stomach(3)|upper_aerodigestive_tract(1)|urinary_tract(1)	67						CATCTGTGAGGAAAAAAAATTG	0.470													7	508	---	---	---	---					
PPP1R17	10842	broad.mit.edu	37	7	31735179	31735179	+	Frame_Shift_Del	DEL	A	A	-			TCGA-HZ-7924-01A-11D-2154-08	TCGA-HZ-7924-10A-01D-2154-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c4c1f4b1-d515-4a44-a975-38fa092bca24	cbb96d11-05d7-46a3-ace3-0b6010d95fb2	g.chr7:31735179delA	ENST00000342032.3	+	3	807	c.179delA	c.(178-180)cafs	p.Q60fs	PPP1R17_ENST00000409146.3_Intron	NM_006658.4	NP_006649.2	O96001	GSUB_HUMAN	protein phosphatase 1, regulatory subunit 17	60					behavior|central nervous system development|intracellular protein kinase cascade|protein phosphorylation	soluble fraction											GAGTCAGACCAAAAAAAACCA	0.438													11	777	---	---	---	---					
PURB	5814	broad.mit.edu	37	7	44924044	44924046	+	In_Frame_Del	DEL	CGC	CGC	-			TCGA-HZ-7924-01A-11D-2154-08	TCGA-HZ-7924-10A-01D-2154-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c4c1f4b1-d515-4a44-a975-38fa092bca24	cbb96d11-05d7-46a3-ace3-0b6010d95fb2	g.chr7:44924044_44924046delCGC	ENST00000395699.2	-	1	914_916	c.902_904delGCG	c.(901-906)gaa>g	p.GE301del		NM_033224.3	NP_150093.1	Q96QR8	PURB_HUMAN	purine-rich element binding protein B	301					regulation of myeloid cell differentiation	DNA replication factor A complex	mRNA binding|single-stranded DNA binding|transcription factor binding			large_intestine(2)|lung(3)|prostate(1)|skin(1)	7						TCTGACTCTTCGCCGCCGCCGCT	0.576													8	728	---	---	---	---					
CCT6P1	0	broad.mit.edu	37	7	65222951	65222951	+	RNA	DEL	T	T	-			TCGA-HZ-7924-01A-11D-2154-08	TCGA-HZ-7924-10A-01D-2154-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c4c1f4b1-d515-4a44-a975-38fa092bca24	cbb96d11-05d7-46a3-ace3-0b6010d95fb2	g.chr7:65222951delT	ENST00000442266.1	+	0	561																											TTTCTGTAACTTTTTTTTTTT	0.323													8	76	---	---	---	---					
WBSCR28	135886	broad.mit.edu	37	7	73279462	73279463	+	Frame_Shift_Ins	INS	-	-	C	rs150108862	by1000genomes	TCGA-HZ-7924-01A-11D-2154-08	TCGA-HZ-7924-10A-01D-2154-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c4c1f4b1-d515-4a44-a975-38fa092bca24	cbb96d11-05d7-46a3-ace3-0b6010d95fb2	g.chr7:73279462_73279463insC	ENST00000320531.2	+	2	248_249	c.212_213insC	c.(211-213)tccfs	p.S71fs		NM_182504.3	NP_872310.2	Q6UE05	WBS28_HUMAN	Williams-Beuren syndrome chromosome region 28	71						integral to membrane				breast(2)|kidney(2)|lung(6)|skin(1)	11		Lung NSC(55;0.159)				GCTGCAGCCTGCCCCCTGGGCC	0.663													10	714	---	---	---	---					
DTX2	113878	broad.mit.edu	37	7	76112249	76112249	+	Frame_Shift_Del	DEL	A	A	-	rs147779783	byFrequency	TCGA-HZ-7924-01A-11D-2154-08	TCGA-HZ-7924-10A-01D-2154-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c4c1f4b1-d515-4a44-a975-38fa092bca24	cbb96d11-05d7-46a3-ace3-0b6010d95fb2	g.chr7:76112249delA	ENST00000324432.5	+	5	1203	c.693delA	c.(691-693)ccfs	p.P231fs	DTX2_ENST00000446600.1_Frame_Shift_Del_p.P140fs|DTX2_ENST00000413936.2_Frame_Shift_Del_p.P231fs|DTX2_ENST00000446820.2_Frame_Shift_Del_p.P231fs|DTX2_ENST00000430490.2_Frame_Shift_Del_p.P231fs|DTX2_ENST00000307569.8_Frame_Shift_Del_p.P231fs	NM_020892.2	NP_065943.2	Q86UW9	DTX2_HUMAN	deltex homolog 2 (Drosophila)	231					Notch signaling pathway	cytoplasm|nucleus	protein binding|zinc ion binding			NS(1)|endometrium(3)|haematopoietic_and_lymphoid_tissue(1)|large_intestine(4)|lung(14)|ovary(1)|skin(1)|stomach(2)	27						AGCACCCCCCACACAGGACCG	0.657													8	1475	---	---	---	---					
RP1L1	94137	broad.mit.edu	37	8	10467706	10467707	+	In_Frame_Ins	INS	-	-	CCC			TCGA-HZ-7924-01A-11D-2154-08	TCGA-HZ-7924-10A-01D-2154-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c4c1f4b1-d515-4a44-a975-38fa092bca24	cbb96d11-05d7-46a3-ace3-0b6010d95fb2	g.chr8:10467706_10467707insCCC	ENST00000382483.3	-	4	4124_4125	c.3901_3902insGGG	c.(3901-3903)gca>GGGgca	p.1300_1301insG		NM_178857.5	NP_849188.4	A6NKC6	A6NKC6_HUMAN	retinitis pigmentosa 1-like 1	1300					intracellular signal transduction					breast(5)|central_nervous_system(2)|cervix(2)|endometrium(6)|haematopoietic_and_lymphoid_tissue(4)|kidney(5)|large_intestine(16)|lung(82)|ovary(8)|prostate(5)|skin(6)|upper_aerodigestive_tract(4)|urinary_tract(3)	148				COAD - Colon adenocarcinoma(149;0.0811)		CTCTAATTGCACCTCTTCTTGC	0.495													7	629	---	---	---	---					
SFTPC	6440	broad.mit.edu	37	8	22021060	22021061	+	Frame_Shift_Del	DEL	GT	GT	-			TCGA-HZ-7924-01A-11D-2154-08	TCGA-HZ-7924-10A-01D-2154-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c4c1f4b1-d515-4a44-a975-38fa092bca24	cbb96d11-05d7-46a3-ace3-0b6010d95fb2	g.chr8:22021060_22021061delGT	ENST00000522109.1	+	4	460_461	c.436_437delGT	c.(436-438)gfs	p.V146fs	SFTPC_ENST00000520605.1_Splice_Site|SFTPC_ENST00000524255.1_Splice_Site|SFTPC_ENST00000437090.2_Splice_Site|SFTPC_ENST00000318561.3_Splice_Site|SFTPC_ENST00000521315.1_Splice_Site			P11686	PSPC_HUMAN	surfactant protein C	146	BRICHOS.				respiratory gaseous exchange	extracellular space		p.M146fs*41(1)		autonomic_ganglia(1)|large_intestine(1)|lung(1)	3				Colorectal(74;0.00191)|COAD - Colon adenocarcinoma(73;0.0615)|READ - Rectum adenocarcinoma(644;0.1)		CAACTTCCAGGTGTGTGTGTGT	0.545													9	147	---	---	---	---					
PXDNL	137902	broad.mit.edu	37	8	52359596	52359596	+	Frame_Shift_Del	DEL	T	T	-			TCGA-HZ-7924-01A-11D-2154-08	TCGA-HZ-7924-10A-01D-2154-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c4c1f4b1-d515-4a44-a975-38fa092bca24	cbb96d11-05d7-46a3-ace3-0b6010d95fb2	g.chr8:52359596delT	ENST00000356297.4	-	12	1593	c.1493delA	c.(1492-1494)agfs	p.K498fs	PXDNL_ENST00000543296.1_Frame_Shift_Del_p.K498fs	NM_144651.4	NP_653252.3	A1KZ92	PXDNL_HUMAN	peroxidasin homolog (Drosophila)-like	498	Ig-like C2-type 3.				hydrogen peroxide catabolic process	extracellular space	heme binding|peroxidase activity			NS(1)|breast(1)|endometrium(6)|haematopoietic_and_lymphoid_tissue(2)|large_intestine(6)|lung(25)|ovary(1)|pancreas(1)|prostate(2)|skin(1)|upper_aerodigestive_tract(2)	48		all_cancers(86;0.107)|Lung NSC(129;0.00641)|all_epithelial(80;0.00716)|all_lung(136;0.015)				CACAGACACCTTTTTCACCCC	0.448													8	941	---	---	---	---					
PCMTD1	115294	broad.mit.edu	37	8	52733063	52733063	+	Frame_Shift_Del	DEL	T	T	-			TCGA-HZ-7924-01A-11D-2154-08	TCGA-HZ-7924-10A-01D-2154-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c4c1f4b1-d515-4a44-a975-38fa092bca24	cbb96d11-05d7-46a3-ace3-0b6010d95fb2	g.chr8:52733063delT	ENST00000360540.5	-	7	1328	c.922delA	c.(922-924)tgfs	p.M308fs	PCMTD1_ENST00000519559.1_5'UTR|PCMTD1_ENST00000544451.1_Frame_Shift_Del_p.M232fs|PCMTD1_ENST00000522514.1_Frame_Shift_Del_p.M308fs	NM_052937.2	NP_443169.2	Q96MG8	PCMD1_HUMAN	protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1	308						cytoplasm	protein-L-isoaspartate (D-aspartate) O-methyltransferase activity			NS(2)|endometrium(1)|kidney(3)|large_intestine(3)|lung(17)|prostate(2)|skin(8)|soft_tissue(1)	37		Lung NSC(129;0.0795)|all_lung(136;0.144)				tcctcttccattttttcatcc	0.373													22	581	---	---	---	---					
CSMD3	114788	broad.mit.edu	37	8	113662425	113662425	+	Frame_Shift_Del	DEL	T	T	-			TCGA-HZ-7924-01A-11D-2154-08	TCGA-HZ-7924-10A-01D-2154-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c4c1f4b1-d515-4a44-a975-38fa092bca24	cbb96d11-05d7-46a3-ace3-0b6010d95fb2	g.chr8:113662425delT	ENST00000297405.5	-	19	3402	c.3158delA	c.(3157-3159)acfs	p.N1053fs	CSMD3_ENST00000352409.3_Frame_Shift_Del_p.N1053fs|CSMD3_ENST00000455883.2_Frame_Shift_Del_p.N949fs|CSMD3_ENST00000343508.3_Frame_Shift_Del_p.N1013fs	NM_198123.1	NP_937756.1	Q7Z407	CSMD3_HUMAN	CUB and Sushi multiple domains 3	1053	Sushi 5.					integral to membrane|plasma membrane				breast(7)|central_nervous_system(6)|endometrium(44)|haematopoietic_and_lymphoid_tissue(8)|kidney(36)|large_intestine(72)|liver(5)|lung(389)|ovary(24)|prostate(6)|skin(23)|upper_aerodigestive_tract(19)|urinary_tract(7)	646						CCACCAGTGGTTTTTTTCGCA	0.378										HNSCC(6;0.00088)|TCGA Ovarian(7;0.080)			9	675	---	---	---	---					
COL22A1	169044	broad.mit.edu	37	8	139809072	139809072	+	Frame_Shift_Del	DEL	T	T	-			TCGA-HZ-7924-01A-11D-2154-08	TCGA-HZ-7924-10A-01D-2154-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c4c1f4b1-d515-4a44-a975-38fa092bca24	cbb96d11-05d7-46a3-ace3-0b6010d95fb2	g.chr8:139809072delT	ENST00000303045.6	-	12	2032	c.1586delA	c.(1585-1587)agfs	p.K529fs	COL22A1_ENST00000435777.1_Frame_Shift_Del_p.K529fs	NM_152888.1	NP_690848.1	Q8NFW1	COMA1_HUMAN	collagen, type XXII, alpha 1	529	Collagen-like 2.|Gly-rich.|Pro-rich.				cell adhesion	collagen|cytoplasm	structural molecule activity			breast(1)|endometrium(10)|haematopoietic_and_lymphoid_tissue(2)|kidney(14)|large_intestine(29)|lung(107)|ovary(13)|pancreas(1)|prostate(3)|skin(12)|upper_aerodigestive_tract(15)|urinary_tract(4)	211	all_epithelial(106;1.55e-12)|Lung NSC(106;1.67e-05)|all_lung(105;3.39e-05)|Ovarian(258;0.00672)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.0517)			CTTTTCACCCTTTTCCCCTTG	0.463										HNSCC(7;0.00092)			7	1495	---	---	---	---					
TOPORS	10210	broad.mit.edu	37	9	32542262	32542262	+	Frame_Shift_Del	DEL	T	T	-			TCGA-HZ-7924-01A-11D-2154-08	TCGA-HZ-7924-10A-01D-2154-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c4c1f4b1-d515-4a44-a975-38fa092bca24	cbb96d11-05d7-46a3-ace3-0b6010d95fb2	g.chr9:32542262delT	ENST00000360538.2	-	3	2377	c.2261delA	c.(2260-2262)atfs	p.N755fs	TOPORS_ENST00000379858.1_Frame_Shift_Del_p.N690fs	NM_005802.4	NP_005793.2	Q9NS56	TOPRS_HUMAN	topoisomerase I binding, arginine/serine-rich, E3 ubiquitin protein ligase	755	Arg-rich.|Interaction with TOP1.				DNA damage response, signal transduction resulting in induction of apoptosis|maintenance of protein location in nucleus|proteasomal ubiquitin-dependent protein catabolic process|protein sumoylation|transcription, DNA-dependent	nuclear speck|PML body	antigen binding|DNA binding|DNA topoisomerase I binding|SUMO ligase activity|ubiquitin-protein ligase activity|zinc ion binding			large_intestine(6)|ovary(3)|skin(2)|upper_aerodigestive_tract(1)	12			LUSC - Lung squamous cell carcinoma(29;0.0181)	GBM - Glioblastoma multiforme(74;0.0018)		ACTGTGATTATTTTTTTTCCT	0.428													7	772	---	---	---	---					
OR1J2	26740	broad.mit.edu	37	9	125273859	125273859	+	Frame_Shift_Del	DEL	T	T	-			TCGA-HZ-7924-01A-11D-2154-08	TCGA-HZ-7924-10A-01D-2154-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c4c1f4b1-d515-4a44-a975-38fa092bca24	cbb96d11-05d7-46a3-ace3-0b6010d95fb2	g.chr9:125273859delT	ENST00000335302.5	+	1	779	c.779delT	c.(778-780)ctfs	p.L260fs		NM_054107.1	NP_473448.1	Q8NGS2	OR1J2_HUMAN	olfactory receptor, family 1, subfamily J, member 2	260					sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			NS(1)|breast(1)|endometrium(1)|haematopoietic_and_lymphoid_tissue(2)|kidney(1)|large_intestine(3)|lung(8)|pancreas(1)|skin(7)|stomach(1)	26						GGCCAGTACCTTTTCCCGACT	0.478													7	1135	---	---	---	---					
PRDM12	59335	broad.mit.edu	37	9	133543701	133543702	+	Splice_Site	DEL	GT	GT	-			TCGA-HZ-7924-01A-11D-2154-08	TCGA-HZ-7924-10A-01D-2154-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c4c1f4b1-d515-4a44-a975-38fa092bca24	cbb96d11-05d7-46a3-ace3-0b6010d95fb2	g.chr9:133543701_133543702delGT	ENST00000253008.2	+	3	630		c.e3+1			NM_021619.2	NP_067632.2	Q9H4Q4	PRD12_HUMAN	PR domain containing 12						regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			kidney(2)|large_intestine(3)|lung(4)|ovary(1)|upper_aerodigestive_tract(1)	11		all_hematologic(13;0.0433)|Acute lymphoblastic leukemia(5;0.0534)		OV - Ovarian serous cystadenocarcinoma(145;0.000344)		GGCCATTGAGGTGTGTGTGTGT	0.594													24	382	---	---	---	---					
FRMD4A	55691	broad.mit.edu	37	10	13699134	13699142	+	In_Frame_Del	DEL	CGCCCCCCG	CGCCCCCCG	-			TCGA-HZ-7924-01A-11D-2154-08	TCGA-HZ-7924-10A-01D-2154-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c4c1f4b1-d515-4a44-a975-38fa092bca24	cbb96d11-05d7-46a3-ace3-0b6010d95fb2	g.chr10:13699134_13699142delCGCCCCCCG	ENST00000357447.2	-	22	2815_2823	c.2447_2455delCGGGGGGCG	c.(2446-2457)ggt>g	p.AGGG816del	FRMD4A_ENST00000358621.4_In_Frame_Del_p.AGGG801del|FRMD4A_ENST00000378503.1_In_Frame_Del_p.AGGG816del	NM_018027.3	NP_060497.3	Q9P2Q2	FRM4A_HUMAN	FERM domain containing 4A	816						cytoplasm|cytoskeleton	binding			breast(4)|endometrium(9)|kidney(2)|large_intestine(11)|lung(9)|ovary(2)|pancreas(1)|prostate(2)|skin(1)	41						AGGTACACAccgccccccgcgccccccgc	0.761													13	22	---	---	---	---					
KIAA1217	56243	broad.mit.edu	37	10	24822125	24822127	+	In_Frame_Del	DEL	GAA	GAA	-			TCGA-HZ-7924-01A-11D-2154-08	TCGA-HZ-7924-10A-01D-2154-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c4c1f4b1-d515-4a44-a975-38fa092bca24	cbb96d11-05d7-46a3-ace3-0b6010d95fb2	g.chr10:24822125_24822127delGAA	ENST00000376451.2	+	11	2682_2684	c.2422_2424delGAA	c.(2422-2424)del	p.E812del	KIAA1217_ENST00000376452.3_In_Frame_Del_p.E1093del|KIAA1217_ENST00000376454.3_In_Frame_Del_p.E1129del|KIAA1217_ENST00000307544.6_In_Frame_Del_p.E812del|KIAA1217_ENST00000458595.1_In_Frame_Del_p.E1094del|KIAA1217_ENST00000376462.1_In_Frame_Del_p.E1049del|KIAA1217_ENST00000396445.1_In_Frame_Del_p.E812del|KIAA1217_ENST00000396446.1_In_Frame_Del_p.E812del			Q5T5P2	SKT_HUMAN	KIAA1217	1129					embryonic skeletal system development	cytoplasm				breast(1)|endometrium(12)|haematopoietic_and_lymphoid_tissue(4)|kidney(3)|large_intestine(19)|lung(19)|ovary(5)|prostate(3)|skin(3)|urinary_tract(1)	70						GGATGAGGAGGAAGAAGAAGAAG	0.552													7	385	---	---	---	---					
ANK3	288	broad.mit.edu	37	10	61828745	61828747	+	In_Frame_Del	DEL	GTG	GTG	-			TCGA-HZ-7924-01A-11D-2154-08	TCGA-HZ-7924-10A-01D-2154-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c4c1f4b1-d515-4a44-a975-38fa092bca24	cbb96d11-05d7-46a3-ace3-0b6010d95fb2	g.chr10:61828745_61828747delGTG	ENST00000280772.1	-	37	12083_12085	c.11892_11894delCAC	c.(11890-11895)act>ac	p.TT3964del	ANK3_ENST00000355288.2_Intron|ANK3_ENST00000503366.1_Intron|ANK3_ENST00000373827.2_Intron	NM_020987.3	NP_066267.2	Q12955	ANK3_HUMAN	ankyrin 3, node of Ranvier (ankyrin G)	3964	Thr-rich.				establishment of protein localization|signal transduction	basolateral plasma membrane|cytoplasm|cytoskeleton	protein binding			NS(4)|breast(7)|central_nervous_system(5)|endometrium(19)|haematopoietic_and_lymphoid_tissue(5)|kidney(14)|large_intestine(30)|liver(2)|lung(59)|ovary(8)|pancreas(2)|prostate(5)|skin(26)|stomach(2)|upper_aerodigestive_tract(1)|urinary_tract(7)	196						ggtggtggcagtggtggtggtgg	0.498													8	576	---	---	---	---					
ZMIZ1	57178	broad.mit.edu	37	10	81072446	81072446	+	Frame_Shift_Del	DEL	C	C	-			TCGA-HZ-7924-01A-11D-2154-08	TCGA-HZ-7924-10A-01D-2154-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c4c1f4b1-d515-4a44-a975-38fa092bca24	cbb96d11-05d7-46a3-ace3-0b6010d95fb2	g.chr10:81072446delC	ENST00000334512.5	+	25	3716	c.3144delC	c.(3142-3144)gafs	p.D1048fs	ZMIZ1_ENST00000446377.2_Frame_Shift_Del_p.D114fs	NM_020338.3	NP_065071.1	Q9ULJ6	ZMIZ1_HUMAN	zinc finger, MIZ-type containing 1	1048					transcription, DNA-dependent	cytoplasm|nuclear speck	zinc ion binding			breast(1)|central_nervous_system(1)|endometrium(2)|kidney(1)|large_intestine(5)|lung(14)|ovary(2)|prostate(3)|skin(1)	30	all_cancers(46;0.0292)|Breast(12;8.52e-05)|all_epithelial(25;0.000854)|Prostate(51;0.00985)		Epithelial(14;0.00256)|all cancers(16;0.00726)|Colorectal(32;0.229)			CTTATCTGGACCCCCCCGACC	0.557													7	1385	---	---	---	---					
TNKS2	80351	broad.mit.edu	37	10	93601945	93601946	+	Frame_Shift_Ins	INS	-	-	A			TCGA-HZ-7924-01A-11D-2154-08	TCGA-HZ-7924-10A-01D-2154-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c4c1f4b1-d515-4a44-a975-38fa092bca24	cbb96d11-05d7-46a3-ace3-0b6010d95fb2	g.chr10:93601945_93601946insA	ENST00000371627.4	+	16	2235_2236	c.1856_1857insA	c.(1855-1857)aaafs	p.K619fs		NM_025235.3	NP_079511.1	Q9H2K2	TNKS2_HUMAN	tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase 2	619					positive regulation of canonical Wnt receptor signaling pathway|protein auto-ADP-ribosylation|protein localization to chromosome, telomeric region|protein polyubiquitination|Wnt receptor signaling pathway	Golgi membrane|microsome|nuclear envelope|pericentriolar material|perinuclear region of cytoplasm	NAD+ ADP-ribosyltransferase activity|protein binding	p.N622fs*29(1)		biliary_tract(1)|breast(1)|cervix(1)|endometrium(7)|kidney(6)|large_intestine(11)|lung(14)|ovary(1)|prostate(2)|skin(3)|urinary_tract(1)	48		Colorectal(252;0.162)				GCAGACCCTACAAAAAAAAACA	0.391													15	298	---	---	---	---					
SPON1	10418	broad.mit.edu	37	11	14276276	14276277	+	RNA	DEL	GT	GT	-			TCGA-HZ-7924-01A-11D-2154-08	TCGA-HZ-7924-10A-01D-2154-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c4c1f4b1-d515-4a44-a975-38fa092bca24	cbb96d11-05d7-46a3-ace3-0b6010d95fb2	g.chr11:14276276_14276277delGT	ENST00000310358.7	+	0	1627							Q9HCB6	SPON1_HUMAN	spondin 1, extracellular matrix protein						cell adhesion	extracellular space|proteinaceous extracellular matrix	protein binding			NS(1)|endometrium(1)|large_intestine(5)|lung(11)|prostate(2)|upper_aerodigestive_tract(1)	21				Epithelial(150;0.00898)		GACCTATGAGGTGTGTGTGTGT	0.594													12	257	---	---	---	---					
PLEKHA7	144100	broad.mit.edu	37	11	16822525	16822525	+	Frame_Shift_Del	DEL	A	A	-			TCGA-HZ-7924-01A-11D-2154-08	TCGA-HZ-7924-10A-01D-2154-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c4c1f4b1-d515-4a44-a975-38fa092bca24	cbb96d11-05d7-46a3-ace3-0b6010d95fb2	g.chr11:16822525delA	ENST00000355661.3	-	17	2415	c.2405delT	c.(2404-2406)tcfs	p.F802fs	PLEKHA7_ENST00000448080.2_Frame_Shift_Del_p.F802fs|PLEKHA7_ENST00000532079.1_Intron|PLEKHA7_ENST00000531066.1_Frame_Shift_Del_p.F802fs			Q6IQ23	PKHA7_HUMAN	pleckstrin homology domain containing, family A member 7	802					epithelial cell-cell adhesion|zonula adherens maintenance	centrosome|zonula adherens	delta-catenin binding			breast(1)|central_nervous_system(1)|endometrium(1)|kidney(3)|large_intestine(7)|lung(13)|ovary(1)|prostate(2)|skin(7)|urinary_tract(1)	37						GGTCACCTGGAAAAAAAAGGC	0.443													7	868	---	---	---	---					
MUC15	143662	broad.mit.edu	37	11	26587427	26587427	+	Frame_Shift_Del	DEL	T	T	-			TCGA-HZ-7924-01A-11D-2154-08	TCGA-HZ-7924-10A-01D-2154-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c4c1f4b1-d515-4a44-a975-38fa092bca24	cbb96d11-05d7-46a3-ace3-0b6010d95fb2	g.chr11:26587427delT	ENST00000436318.2	-	2	193	c.60delA	c.(58-60)aafs	p.K20fs	MUC15_ENST00000527569.1_Frame_Shift_Del_p.K20fs|ANO3_ENST00000537978.1_Intron|MUC15_ENST00000529533.1_Frame_Shift_Del_p.K20fs|ANO3_ENST00000531568.1_Intron|MUC15_ENST00000281268.8_Frame_Shift_Del_p.K20fs|ANO3_ENST00000256737.3_Intron|ANO3_ENST00000525139.1_Intron|MUC15_ENST00000455601.2_5'UTR			Q8N387	MUC15_HUMAN	mucin 15, cell surface associated	0						extracellular region|integral to membrane|plasma membrane				breast(1)|central_nervous_system(1)|endometrium(3)|kidney(3)|large_intestine(5)|lung(7)|ovary(1)|pancreas(1)|skin(2)|upper_aerodigestive_tract(1)	25						TTGGTATTGGTTTTTTTTTAA	0.289													7	312	---	---	---	---					
SLC22A9	114571	broad.mit.edu	37	11	63149668	63149669	+	Frame_Shift_Ins	INS	-	-	A			TCGA-HZ-7924-01A-11D-2154-08	TCGA-HZ-7924-10A-01D-2154-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c4c1f4b1-d515-4a44-a975-38fa092bca24	cbb96d11-05d7-46a3-ace3-0b6010d95fb2	g.chr11:63149668_63149669insA	ENST00000279178.3	+	6	1241_1242	c.992_993insA	c.(991-993)gcafs	p.A331fs	SLC22A9_ENST00000310969.4_3'UTR	NM_080866.2	NP_543142.2	Q8IVM8	S22A9_HUMAN	solute carrier family 22 (organic anion transporter), member 9	331					transmembrane transport	integral to membrane				breast(2)|cervix(1)|endometrium(2)|kidney(2)|large_intestine(3)|lung(7)|upper_aerodigestive_tract(1)	18						CTGGAGGCAGCACAAAAAAAAA	0.406													8	812	---	---	---	---					
FAU	2197	broad.mit.edu	37	11	64888248	64888250	+	In_Frame_Del	DEL	TCT	TCT	-	rs1065065		TCGA-HZ-7924-01A-11D-2154-08	TCGA-HZ-7924-10A-01D-2154-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c4c1f4b1-d515-4a44-a975-38fa092bca24	cbb96d11-05d7-46a3-ace3-0b6010d95fb2	g.chr11:64888248_64888250delTCT	ENST00000529639.1	-	5	696_698	c.305_307delAGA	c.(304-309)aca>a	p.KT102del	FAU_ENST00000279259.3_In_Frame_Del_p.ED83del|FAU_ENST00000525297.1_In_Frame_Del_p.KT67del|FAU_ENST00000531743.1_In_Frame_Del_p.KT102del|FAU_ENST00000529259.1_3'UTR|FAU_ENST00000527548.1_In_Frame_Del_p.KT102del	NM_001997.4	NP_001988.1	P35544	UBIM_HUMAN	Finkel-Biskis-Reilly murine sarcoma virus (FBR-MuSV) ubiquitously expressed	0										NS(3)|kidney(1)|large_intestine(2)	6						GCCCGACCTGTCTTCTTCTTCTT	0.542													9	772	---	---	---	---					
NOX4	50507	broad.mit.edu	37	11	89106662	89106663	+	Splice_Site	INS	-	-	A	rs56022003		TCGA-HZ-7924-01A-11D-2154-08	TCGA-HZ-7924-10A-01D-2154-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c4c1f4b1-d515-4a44-a975-38fa092bca24	cbb96d11-05d7-46a3-ace3-0b6010d95fb2	g.chr11:89106662_89106663insA	ENST00000535633.1	-	12	1313		c.e12-2		NOX4_ENST00000527956.1_Splice_Site|NOX4_ENST00000343727.5_Splice_Site|NOX4_ENST00000263317.4_Splice_Site|NOX4_ENST00000534731.1_Splice_Site|NOX4_ENST00000532825.1_Splice_Site|NOX4_ENST00000525196.1_Intron|NOX4_ENST00000413594.2_Splice_Site|NOX4_ENST00000424319.1_Splice_Site|NOX4_ENST00000531342.1_Splice_Site|NOX4_ENST00000527626.1_Splice_Site|NOX4_ENST00000375979.3_Splice_Site|NOX4_ENST00000528341.1_Splice_Site|NOX4_ENST00000542487.1_Splice_Site	NM_001143836.1|NM_016931.3	NP_001137308.1|NP_058627.1	Q9NPH5	NOX4_HUMAN	NADPH oxidase 4						cell aging|cell morphogenesis|inflammatory response|negative regulation of cell proliferation|superoxide anion generation	endoplasmic reticulum membrane|focal adhesion|integral to membrane|nucleus	electron carrier activity|flavin adenine dinucleotide binding|heme binding|NAD(P)H oxidase activity|nucleotide binding|oxygen sensor activity	p.?(1)		NS(2)|central_nervous_system(1)|endometrium(3)|kidney(3)|large_intestine(8)|lung(20)|ovary(2)|prostate(3)|skin(2)	44		Acute lymphoblastic leukemia(157;2.26e-05)|all_hematologic(158;0.011)				AGTTGGACACTAAAAAAAAATA	0.292													7	707	---	---	---	---					
ANKRD49	54851	broad.mit.edu	37	11	94230120	94230120	+	Frame_Shift_Del	DEL	A	A	-			TCGA-HZ-7924-01A-11D-2154-08	TCGA-HZ-7924-10A-01D-2154-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c4c1f4b1-d515-4a44-a975-38fa092bca24	cbb96d11-05d7-46a3-ace3-0b6010d95fb2	g.chr11:94230120delA	ENST00000544253.1	+	2	379	c.261delA	c.(259-261)gtfs	p.V87fs	ANKRD49_ENST00000540349.1_Frame_Shift_Del_p.V87fs|ANKRD49_ENST00000302755.4_Intron|ANKRD49_ENST00000544612.1_Intron			Q8WVL7	ANR49_HUMAN	ankyrin repeat domain 49	87					positive regulation of transcription, DNA-dependent					autonomic_ganglia(1)|central_nervous_system(1)|kidney(1)|large_intestine(3)|liver(1)|lung(4)|urinary_tract(1)	12		Acute lymphoblastic leukemia(157;2.31e-05)|all_hematologic(158;0.00824)				AAAATCGGGTAAAAAAAAAAA	0.393													26	621	---	---	---	---					
DDX10	1662	broad.mit.edu	37	11	108559769	108559769	+	Frame_Shift_Del	DEL	T	T	-			TCGA-HZ-7924-01A-11D-2154-08	TCGA-HZ-7924-10A-01D-2154-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c4c1f4b1-d515-4a44-a975-38fa092bca24	cbb96d11-05d7-46a3-ace3-0b6010d95fb2	g.chr11:108559769delT	ENST00000526794.1	+	7	987	c.955delT	c.(955-957)ttfs	p.F320fs	DDX10_ENST00000322536.3_Frame_Shift_Del_p.F320fs			Q13206	DDX10_HUMAN	DEAD (Asp-Glu-Ala-Asp) box polypeptide 10	320	Helicase C-terminal.						ATP binding|ATP-dependent helicase activity|RNA binding|RNA helicase activity			breast(2)|endometrium(5)|kidney(2)|large_intestine(4)|lung(11)|pancreas(1)|prostate(2)	27		all_cancers(61;1.29e-11)|all_epithelial(67;2.96e-07)|Melanoma(852;1.54e-05)|Acute lymphoblastic leukemia(157;4.24e-05)|all_hematologic(158;0.000141)|Breast(348;0.026)|all_neural(223;0.0729)		BRCA - Breast invasive adenocarcinoma(274;2.48e-05)|Epithelial(105;4.35e-05)|all cancers(92;0.000609)|OV - Ovarian serous cystadenocarcinoma(223;0.133)		GAGCATTGTATTTTTTTCCAG	0.353			T	NUP98	AML*								9	1619	---	---	---	---					
CADM1	23705	broad.mit.edu	37	11	115080312	115080314	+	In_Frame_Del	DEL	TGG	TGG	-			TCGA-HZ-7924-01A-11D-2154-08	TCGA-HZ-7924-10A-01D-2154-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c4c1f4b1-d515-4a44-a975-38fa092bca24	cbb96d11-05d7-46a3-ace3-0b6010d95fb2	g.chr11:115080312_115080314delTGG	ENST00000537058.1	-	8	1078_1080	c.1058_1060delCCA	c.(1057-1062)atc>a	p.TI353del	CADM1_ENST00000542447.2_Intron|CADM1_ENST00000331581.6_In_Frame_Del_p.TI353del|CADM1_ENST00000537140.1_Intron|CADM1_ENST00000536727.1_Intron|CADM1_ENST00000452722.2_In_Frame_Del_p.TI353del			Q9BY67	CADM1_HUMAN	cell adhesion molecule 1	353				PPTTIPPPTTTTTTTTTTTTTILTIIT -> TTATTEPAVH GLTQLPNSAEELDSEDLS (in Ref. 3; BAC11657).	adherens junction organization|apoptosis|cell differentiation|cell junction assembly|cell recognition|detection of stimulus|heterophilic cell-cell adhesion|homophilic cell adhesion|multicellular organismal development|positive regulation of cytokine secretion|spermatogenesis|susceptibility to natural killer cell mediated cytotoxicity	basolateral plasma membrane|cell-cell junction|integral to membrane	PDZ domain binding|protein C-terminus binding|protein homodimerization activity|receptor binding			cervix(1)|endometrium(4)|kidney(4)|large_intestine(11)|lung(9)|ovary(2)|skin(1)	32	all_hematologic(175;0.0628)	all_cancers(61;2.98e-14)|all_epithelial(67;2.64e-08)|all_hematologic(158;0.000154)|Melanoma(852;0.000952)|Acute lymphoblastic leukemia(157;0.00101)|Breast(348;0.0102)|Medulloblastoma(222;0.0429)|Prostate(24;0.145)|all_neural(223;0.237)		BRCA - Breast invasive adenocarcinoma(274;5.01e-06)|Epithelial(105;0.000305)|all cancers(92;0.00303)		atggtaaggatggtggtggtggt	0.429													10	352	---	---	---	---					
KDM5A	5927	broad.mit.edu	37	12	416952	416953	+	Frame_Shift_Ins	INS	-	-	T			TCGA-HZ-7924-01A-11D-2154-08	TCGA-HZ-7924-10A-01D-2154-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c4c1f4b1-d515-4a44-a975-38fa092bca24	cbb96d11-05d7-46a3-ace3-0b6010d95fb2	g.chr12:416952_416953insT	ENST00000399788.2	-	23	3959_3960	c.3597_3598insA	c.(3595-3600)aagatcfs	p.I1200fs	KDM5A_ENST00000382815.4_Frame_Shift_Ins_p.I1200fs	NM_001042603.1	NP_001036068.1	P29375	KDM5A_HUMAN	lysine (K)-specific demethylase 5A	1200					chromatin modification|multicellular organismal development|positive regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter	cytoplasm|nucleolus	DNA binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|sequence-specific DNA binding transcription factor activity|zinc ion binding			NS(2)|breast(4)|central_nervous_system(2)|cervix(2)|endometrium(5)|haematopoietic_and_lymphoid_tissue(1)|kidney(3)|large_intestine(14)|lung(29)|ovary(1)|prostate(5)|skin(6)|stomach(1)|urinary_tract(2)	77						CAGCTGGATCCTTTTTTTTGGG	0.475			T	NUP98	AML								9	645	---	---	---	---					
CD163L1	283316	broad.mit.edu	37	12	7556270	7556270	+	Frame_Shift_Del	DEL	T	T	-			TCGA-HZ-7924-01A-11D-2154-08	TCGA-HZ-7924-10A-01D-2154-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c4c1f4b1-d515-4a44-a975-38fa092bca24	cbb96d11-05d7-46a3-ace3-0b6010d95fb2	g.chr12:7556270delT	ENST00000313599.3	-	6	1326	c.1269delA	c.(1267-1269)aafs	p.K423fs	CD163L1_ENST00000396630.1_Frame_Shift_Del_p.K423fs|CD163L1_ENST00000416109.2_Frame_Shift_Del_p.K433fs			Q9NR16	C163B_HUMAN	CD163 molecule-like 1	423	SRCR 4.					extracellular region|integral to membrane|plasma membrane	scavenger receptor activity			breast(5)|central_nervous_system(3)|endometrium(8)|kidney(3)|large_intestine(18)|lung(37)|ovary(8)|prostate(3)|skin(6)|stomach(1)|urinary_tract(4)	96						CATTACTAGGTTTAGCACGAC	0.458													7	804	---	---	---	---					
TAS2R50	259296	broad.mit.edu	37	12	11139432	11139432	+	Frame_Shift_Del	DEL	A	A	-	rs79147066		TCGA-HZ-7924-01A-11D-2154-08	TCGA-HZ-7924-10A-01D-2154-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c4c1f4b1-d515-4a44-a975-38fa092bca24	cbb96d11-05d7-46a3-ace3-0b6010d95fb2	g.chr12:11139432delA	ENST00000506868.1	-	1	79	c.28delT	c.(28-30)cafs	p.S10fs	TAS2R14_ENST00000381852.4_Intron|PRR4_ENST00000536668.1_Intron	NM_176890.2	NP_795371.2	P59544	T2R50_HUMAN	taste receptor, type 2, member 50	10					sensory perception of taste	integral to membrane	G-protein coupled receptor activity	p.S10fs*3(2)|p.S10fs*25(1)		haematopoietic_and_lymphoid_tissue(1)|kidney(3)|large_intestine(6)|lung(4)|ovary(2)|pancreas(1)	17						ATTAGAATTGAAAAAAAAATG	0.318													7	291	---	---	---	---					
SCAF11	9169	broad.mit.edu	37	12	46320707	46320708	+	Frame_Shift_Del	DEL	TC	TC	-			TCGA-HZ-7924-01A-11D-2154-08	TCGA-HZ-7924-10A-01D-2154-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c4c1f4b1-d515-4a44-a975-38fa092bca24	cbb96d11-05d7-46a3-ace3-0b6010d95fb2	g.chr12:46320707_46320708delTC	ENST00000465950.1	-	1	3040_3041	c.1831_1832delGA	c.(1831-1833)afs	p.E611fs	SCAF11_ENST00000419565.2_Frame_Shift_Del_p.E926fs|SCAF11_ENST00000369367.3_Frame_Shift_Del_p.E926fs|SCAF11_ENST00000549162.1_Frame_Shift_Del_p.E734fs			Q99590	SCAFB_HUMAN	SR-related CTD-associated factor 11	926					spliceosome assembly	nucleus	protein binding|zinc ion binding			breast(2)|central_nervous_system(1)|endometrium(2)|kidney(8)|large_intestine(17)|lung(25)|ovary(3)|pancreas(1)|prostate(1)|skin(2)|stomach(1)|upper_aerodigestive_tract(3)|urinary_tract(3)	69						GGTTCTCCTTTCTCTCTCTCTC	0.446													16	975	---	---	---	---					
TMBIM4	51643	broad.mit.edu	37	12	66531936	66531937	+	Frame_Shift_Ins	INS	-	-	A			TCGA-HZ-7924-01A-11D-2154-08	TCGA-HZ-7924-10A-01D-2154-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c4c1f4b1-d515-4a44-a975-38fa092bca24	cbb96d11-05d7-46a3-ace3-0b6010d95fb2	g.chr12:66531936_66531937insA	ENST00000358230.3	-	7	640_641	c.520_521insT	c.(520-522)tagfs	p.*174fs	TMBIM4_ENST00000398033.4_Frame_Shift_Ins_p.S159fs|TMBIM4_ENST00000286424.7_Frame_Shift_Ins_p.*221fs|TMBIM4_ENST00000539652.1_Intron|TMBIM4_ENST00000542724.1_Frame_Shift_Ins_p.*143fs|TMBIM4_ENST00000556010.1_Intron|TMBIM4_ENST00000544599.1_5'UTR	NM_016056.2	NP_057140.2	Q9HC24	TMBI4_HUMAN	transmembrane BAX inhibitor motif containing 4	174						integral to membrane	protein binding			central_nervous_system(1)|endometrium(1)|large_intestine(4)|ovary(1)|prostate(2)	9				GBM - Glioblastoma multiforme(28;0.0745)		TATCTCACTATAAAAAAAAAAC	0.351													8	233	---	---	---	---					
TMEM19	55266	broad.mit.edu	37	12	72094757	72094757	+	Frame_Shift_Del	DEL	T	T	-			TCGA-HZ-7924-01A-11D-2154-08	TCGA-HZ-7924-10A-01D-2154-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c4c1f4b1-d515-4a44-a975-38fa092bca24	cbb96d11-05d7-46a3-ace3-0b6010d95fb2	g.chr12:72094757delT	ENST00000266673.5	+	6	1587	c.993delT	c.(991-993)ggfs	p.G331fs		NM_018279.3	NP_060749.2	Q96HH6	TMM19_HUMAN	transmembrane protein 19	331						integral to membrane				large_intestine(1)|lung(8)	9		Breast(359;0.0889)		GBM - Glioblastoma multiforme(134;0.044)		CTGCTTGGGGTTTTTGGCCCA	0.433													8	943	---	---	---	---					
TMPO	7112	broad.mit.edu	37	12	98921671	98921672	+	Frame_Shift_Ins	INS	-	-	A			TCGA-HZ-7924-01A-11D-2154-08	TCGA-HZ-7924-10A-01D-2154-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c4c1f4b1-d515-4a44-a975-38fa092bca24	cbb96d11-05d7-46a3-ace3-0b6010d95fb2	g.chr12:98921671_98921672insA	ENST00000556029.1	+	2	643_644	c.287_288insA	c.(286-288)aaafs	p.K96fs	TMPO_ENST00000393053.2_Frame_Shift_Ins_p.K96fs|TMPO_ENST00000266732.4_Frame_Shift_Ins_p.K96fs|TMPO_ENST00000343315.5_Frame_Shift_Ins_p.K96fs|TMPO_ENST00000261210.5_Frame_Shift_Ins_p.K96fs	NM_001032283.2	NP_001027454.1	P42167	LAP2B_HUMAN	thymopoietin	96	Linker.|Nucleoplasmic (Potential).					integral to membrane|nuclear inner membrane	DNA binding|lamin binding			breast(2)|endometrium(1)|large_intestine(4)|lung(5)|ovary(2)|upper_aerodigestive_tract(1)|urinary_tract(1)	16						CAGAAAGCCACAAAAAAAACTG	0.332													8	539	---	---	---	---					
UTP20	27340	broad.mit.edu	37	12	101680156	101680157	+	Frame_Shift_Ins	INS	-	-	T			TCGA-HZ-7924-01A-11D-2154-08	TCGA-HZ-7924-10A-01D-2154-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c4c1f4b1-d515-4a44-a975-38fa092bca24	cbb96d11-05d7-46a3-ace3-0b6010d95fb2	g.chr12:101680156_101680157insT	ENST00000261637.4	+	5	558_559	c.384_385insT	c.(382-387)gattttfs	p.DF128fs		NM_014503.2	NP_055318.2	O75691	UTP20_HUMAN	UTP20, small subunit (SSU) processome component, homolog (yeast)	128					endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)|endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)|endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)|negative regulation of cell proliferation	90S preribosome|cytoplasm|nucleolus|nucleoplasm|preribosome, small subunit precursor|small-subunit processome	protein binding			NS(3)|biliary_tract(1)|breast(3)|central_nervous_system(1)|cervix(1)|endometrium(9)|kidney(2)|large_intestine(26)|lung(30)|ovary(2)|prostate(3)|skin(1)|stomach(2)|upper_aerodigestive_tract(2)|urinary_tract(2)	88						ACTTTCCAGAGTTTTTTTTGAC	0.396													7	1198	---	---	---	---					
C12orf42	374470	broad.mit.edu	37	12	103695960	103695960	+	Frame_Shift_Del	DEL	G	G	-			TCGA-HZ-7924-01A-11D-2154-08	TCGA-HZ-7924-10A-01D-2154-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c4c1f4b1-d515-4a44-a975-38fa092bca24	cbb96d11-05d7-46a3-ace3-0b6010d95fb2	g.chr12:103695960delG	ENST00000548048.1	-	9	1304	c.808delC	c.(808-810)gcfs	p.R270fs	C12orf42_ENST00000378113.2_Frame_Shift_Del_p.R337fs|C12orf42_ENST00000315192.8_Intron|C12orf42_ENST00000548883.1_Frame_Shift_Del_p.R337fs			Q96LP6	CL042_HUMAN	chromosome 12 open reading frame 42	337										NS(1)|breast(1)|central_nervous_system(1)|endometrium(3)|kidney(1)|large_intestine(5)|lung(7)|ovary(2)|prostate(1)	22						CGGGTTGGGCGGGGGGGTGCT	0.587													7	525	---	---	---	---					
MSI1	4440	broad.mit.edu	37	12	120800902	120800903	+	Frame_Shift_Ins	INS	-	-	C			TCGA-HZ-7924-01A-11D-2154-08	TCGA-HZ-7924-10A-01D-2154-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c4c1f4b1-d515-4a44-a975-38fa092bca24	cbb96d11-05d7-46a3-ace3-0b6010d95fb2	g.chr12:120800902_120800903insC	ENST00000257552.2	-	6	433_434	c.345_346insG	c.(343-348)ggtgtcfs	p.V116fs		NM_002442.3	NP_002433.1	O43347	MSI1H_HUMAN	musashi RNA-binding protein 1	116	RRM 2.				nervous system development	cytoplasm|nucleus	nucleotide binding			breast(4)|central_nervous_system(2)|cervix(1)|haematopoietic_and_lymphoid_tissue(1)|kidney(3)|large_intestine(1)|lung(5)|skin(2)	19	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)					TTCACCGACAGCCCCCCCACAA	0.564													7	909	---	---	---	---					
CLIP1	6249	broad.mit.edu	37	12	122812693	122812694	+	Frame_Shift_Ins	INS	-	-	T	rs77289752		TCGA-HZ-7924-01A-11D-2154-08	TCGA-HZ-7924-10A-01D-2154-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c4c1f4b1-d515-4a44-a975-38fa092bca24	cbb96d11-05d7-46a3-ace3-0b6010d95fb2	g.chr12:122812693_122812694insT	ENST00000358808.2	-	16	3170_3171	c.3016_3017insA	c.(3016-3018)aagfs	p.K1006fs	CLIP1_ENST00000361654.4_Frame_Shift_Ins_p.K895fs|CLIP1_ENST00000302528.7_Frame_Shift_Ins_p.K1006fs|CLIP1_ENST00000545889.1_Frame_Shift_Ins_p.K592fs|CLIP1_ENST00000540338.1_Frame_Shift_Ins_p.K1017fs|CLIP1_ENST00000537178.1_Frame_Shift_Ins_p.K971fs	NM_001247997.1|NM_002956.2	NP_001234926.1|NP_002947.1	P30622	CLIP1_HUMAN	CAP-GLY domain containing linker protein 1	1017					mitotic prometaphase|positive regulation of microtubule polymerization	centrosome|cytosol|endosome|intermediate filament|kinetochore	nucleic acid binding|protein homodimerization activity|zinc ion binding			NS(1)|breast(5)|endometrium(4)|kidney(5)|large_intestine(16)|liver(1)|lung(21)|ovary(2)|prostate(3)|upper_aerodigestive_tract(1)|urinary_tract(1)	60	all_neural(191;0.0837)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;1.81e-05)|Epithelial(86;6.85e-05)|BRCA - Breast invasive adenocarcinoma(302;0.226)		GTTGTGGCTTGTTTCCATTTTC	0.505													8	802	---	---	---	---					
POLE	5426	broad.mit.edu	37	12	133220099	133220100	+	Frame_Shift_Del	DEL	CA	CA	-			TCGA-HZ-7924-01A-11D-2154-08	TCGA-HZ-7924-10A-01D-2154-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c4c1f4b1-d515-4a44-a975-38fa092bca24	cbb96d11-05d7-46a3-ace3-0b6010d95fb2	g.chr12:133220099_133220100delCA	ENST00000320574.5	-	34	4380_4381	c.4337_4338delTG	c.(4336-4338)gfs	p.V1447fs	POLE_ENST00000535270.1_Frame_Shift_Del_p.V1420fs	NM_006231.2	NP_006222.2	Q07864	DPOE1_HUMAN	polymerase (DNA directed), epsilon, catalytic subunit	1447					base-excision repair, gap-filling|DNA synthesis involved in DNA repair|DNA-dependent DNA replication initiation|G1/S transition of mitotic cell cycle|M/G1 transition of mitotic cell cycle|nucleotide-excision repair, DNA gap filling|S phase of mitotic cell cycle|telomere maintenance via recombination|telomere maintenance via semi-conservative replication|transcription-coupled nucleotide-excision repair	nucleoplasm	chromatin binding|DNA binding|DNA-directed DNA polymerase activity|nucleotide binding|protein binding|zinc ion binding			NS(2)|autonomic_ganglia(1)|breast(5)|central_nervous_system(1)|endometrium(7)|haematopoietic_and_lymphoid_tissue(1)|kidney(3)|large_intestine(16)|lung(41)|ovary(3)|pancreas(2)|prostate(1)|skin(5)|upper_aerodigestive_tract(1)	89	all_neural(191;0.0982)|Medulloblastoma(191;0.163)	all_epithelial(31;0.0416)		OV - Ovarian serous cystadenocarcinoma(86;5.22e-08)|Epithelial(86;4.03e-07)|all cancers(50;1.18e-05)		GTTTATTGACCACACACACACA	0.604								DNA polymerases (catalytic subunits)					21	1244	---	---	---	---					
WASF3	10810	broad.mit.edu	37	13	27250862	27250863	+	Splice_Site	DEL	GT	GT	-			TCGA-HZ-7924-01A-11D-2154-08	TCGA-HZ-7924-10A-01D-2154-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c4c1f4b1-d515-4a44-a975-38fa092bca24	cbb96d11-05d7-46a3-ace3-0b6010d95fb2	g.chr13:27250862_27250863delGT	ENST00000335327.5	+	7	894		c.e7+1		WASF3_ENST00000361042.4_Intron	NM_006646.5	NP_006637.2	Q9UPY6	WASF3_HUMAN	WAS protein family, member 3						actin filament polymerization	cytoplasm|cytoskeleton	actin binding			breast(2)|endometrium(3)|kidney(2)|large_intestine(4)|lung(6)|pancreas(1)|prostate(2)|skin(2)	22	Colorectal(5;0.000247)	Lung SC(185;0.0156)|Breast(139;0.147)		all cancers(112;0.0114)|Epithelial(112;0.046)|OV - Ovarian serous cystadenocarcinoma(117;0.0547)|Lung(94;0.105)|LUSC - Lung squamous cell carcinoma(192;0.155)		CAGATACTAGGTGTGTGTGTGT	0.475													8	482	---	---	---	---					
RBM26	64062	broad.mit.edu	37	13	79918806	79918807	+	Frame_Shift_Ins	INS	-	-	T			TCGA-HZ-7924-01A-11D-2154-08	TCGA-HZ-7924-10A-01D-2154-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c4c1f4b1-d515-4a44-a975-38fa092bca24	cbb96d11-05d7-46a3-ace3-0b6010d95fb2	g.chr13:79918806_79918807insT	ENST00000438737.2	-	15	2621_2622	c.2181_2182insA	c.(2179-2184)aaaggafs	p.G728fs	RBM26_ENST00000438724.1_Frame_Shift_Ins_p.G704fs|RBM26_ENST00000267229.7_Frame_Shift_Ins_p.G701fs			Q5T8P6	RBM26_HUMAN	RNA binding motif protein 26	728					mRNA processing		nucleotide binding|protein binding|RNA binding|zinc ion binding			NS(1)|biliary_tract(1)|breast(2)|cervix(1)|endometrium(7)|kidney(4)|large_intestine(6)|lung(7)|ovary(1)|skin(2)|upper_aerodigestive_tract(1)	33		Acute lymphoblastic leukemia(28;0.0279)		GBM - Glioblastoma multiforme(99;0.0188)		GTACTTACCTGTTTTTTTTTCT	0.332													7	257	---	---	---	---					
TRAV40	0	broad.mit.edu	37	14	22783028	22783030	+	RNA	DEL	ACA	ACA	-	rs150962227		TCGA-HZ-7924-01A-11D-2154-08	TCGA-HZ-7924-10A-01D-2154-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c4c1f4b1-d515-4a44-a975-38fa092bca24	cbb96d11-05d7-46a3-ace3-0b6010d95fb2	g.chr14:22783028_22783030delACA	ENST00000390467.3	+	0	43																											TCCAAAAGATACAACAACTCTGG	0.360													50	46	---	---	---	---					
ACIN1	22985	broad.mit.edu	37	14	23528502	23528503	+	Frame_Shift_Del	DEL	TC	TC	-			TCGA-HZ-7924-01A-11D-2154-08	TCGA-HZ-7924-10A-01D-2154-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c4c1f4b1-d515-4a44-a975-38fa092bca24	cbb96d11-05d7-46a3-ace3-0b6010d95fb2	g.chr14:23528502_23528503delTC	ENST00000262710.1	-	19	4207_4208	c.3880_3881delGA	c.(3880-3882)afs	p.E1294fs	ACIN1_ENST00000605057.1_Frame_Shift_Del_p.E1236fs|ACIN1_ENST00000555053.1_Frame_Shift_Del_p.E1281fs|ACIN1_ENST00000457657.1_Frame_Shift_Del_p.E1254fs|ACIN1_ENST00000357481.2_Frame_Shift_Del_p.E536fs|ACIN1_ENST00000557515.1_Frame_Shift_Del_p.E535fs|ACIN1_ENST00000338631.6_Frame_Shift_Del_p.E567fs|ACIN1_ENST00000397341.3_Frame_Shift_Del_p.E536fs	NM_001164814.1|NM_014977.3	NP_001158286.1|NP_055792.1	Q9UKV3	ACINU_HUMAN	apoptotic chromatin condensation inducer 1	1294	Arg/Asp/Glu/Lys-rich.				apoptotic chromosome condensation|erythrocyte differentiation|positive regulation of monocyte differentiation	cytosol	ATPase activity|enzyme binding|nucleic acid binding|nucleotide binding			breast(1)|endometrium(6)|kidney(4)|large_intestine(9)|lung(10)|ovary(2)|prostate(3)|skin(1)|upper_aerodigestive_tract(1)	37	all_cancers(95;1.36e-05)			GBM - Glioblastoma multiforme(265;0.00816)		ccgctccctttctctctctctc	0.629											OREG0022595	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	10	237	---	---	---	---					
IL25	0	broad.mit.edu	37	14	23845057	23845058	+	Frame_Shift_Del	DEL	TG	TG	-			TCGA-HZ-7924-01A-11D-2154-08	TCGA-HZ-7924-10A-01D-2154-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c4c1f4b1-d515-4a44-a975-38fa092bca24	cbb96d11-05d7-46a3-ace3-0b6010d95fb2	g.chr14:23845057_23845058delTG	ENST00000329715.2	+	2	760_761	c.502_503delTG	c.(502-504)tfs	p.C168fs	IL25_ENST00000397242.2_Frame_Shift_Del_p.C152fs	NM_022789.3	NP_073626.1	Q9H293	IL25_HUMAN	interleukin 25	168					inflammatory response	extracellular space|membrane	cytokine activity|interleukin-17E receptor binding			NS(1)|cervix(1)|endometrium(1)|kidney(1)|large_intestine(2)|lung(2)|ovary(1)	9	all_cancers(95;2e-05)			GBM - Glioblastoma multiforme(265;0.00665)|READ - Rectum adenocarcinoma(4;0.0276)|Colorectal(4;0.0396)		TTCCTTAGCTTGTGTGTGTGTG	0.604													14	654	---	---	---	---					
BAZ1A	11177	broad.mit.edu	37	14	35331422	35331423	+	Frame_Shift_Ins	INS	-	-	T			TCGA-HZ-7924-01A-11D-2154-08	TCGA-HZ-7924-10A-01D-2154-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c4c1f4b1-d515-4a44-a975-38fa092bca24	cbb96d11-05d7-46a3-ace3-0b6010d95fb2	g.chr14:35331422_35331423insT	ENST00000360310.1	-	3	786_787	c.219_220insA	c.(217-222)aacaagfs	p.NK73fs	BAZ1A_ENST00000553853.1_5'UTR|BAZ1A_ENST00000382422.2_Frame_Shift_Ins_p.NK73fs|BAZ1A_ENST00000358716.4_Frame_Shift_Ins_p.NK73fs	NM_013448.2	NP_038476.2	Q9NRL2	BAZ1A_HUMAN	bromodomain adjacent to zinc finger domain, 1A	73	Required for association with the CHRAC1/POLE3 complex.|Required for interaction with NCOR1.|WAC.				chromatin remodeling|regulation of transcription, DNA-dependent|transcription, DNA-dependent	ACF complex	zinc ion binding			breast(2)|central_nervous_system(2)|cervix(2)|endometrium(6)|kidney(2)|large_intestine(7)|lung(19)|ovary(2)|skin(3)|stomach(1)|upper_aerodigestive_tract(1)|urinary_tract(1)	48	Breast(36;0.0388)|Hepatocellular(127;0.158)		LUAD - Lung adenocarcinoma(48;7.23e-05)|Lung(238;0.00019)|Epithelial(34;0.0793)|all cancers(34;0.175)	GBM - Glioblastoma multiforme(112;0.0659)		TTCTGTCTTGCTTTTTTTTCTG	0.426													8	1017	---	---	---	---					
TMED10	10972	broad.mit.edu	37	14	75601711	75601712	+	Splice_Site	INS	-	-	A			TCGA-HZ-7924-01A-11D-2154-08	TCGA-HZ-7924-10A-01D-2154-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c4c1f4b1-d515-4a44-a975-38fa092bca24	cbb96d11-05d7-46a3-ace3-0b6010d95fb2	g.chr14:75601711_75601712insA	ENST00000303575.4	-	5	590		c.e5-2		TMED10_ENST00000557670.1_Splice_Site|RP11-950C14.7_ENST00000556236.1_RNA	NM_006827.5	NP_006818.3	P49755	TMEDA_HUMAN	transmembrane emp24-like trafficking protein 10 (yeast)						protein transport|regulated secretory pathway|vesicle targeting, to, from or within Golgi	cis-Golgi network|ER-Golgi intermediate compartment|Golgi membrane|integral to membrane|melanosome|microsome|zymogen granule membrane	protein binding			endometrium(1)|large_intestine(5)|lung(3)	9				BRCA - Breast invasive adenocarcinoma(234;0.0126)		TTGTTGACTCTAAAAAAAAACA	0.426													14	365	---	---	---	---					
BTBD7	55727	broad.mit.edu	37	14	93712186	93712188	+	In_Frame_Del	DEL	TGC	TGC	-			TCGA-HZ-7924-01A-11D-2154-08	TCGA-HZ-7924-10A-01D-2154-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c4c1f4b1-d515-4a44-a975-38fa092bca24	cbb96d11-05d7-46a3-ace3-0b6010d95fb2	g.chr14:93712186_93712188delTGC	ENST00000334746.5	-	10	2873_2875	c.2566_2568delGCA	c.(2566-2568)del	p.A856del	BTBD7_ENST00000554565.1_In_Frame_Del_p.A505del|BTBD7_ENST00000393170.2_In_Frame_Del_p.A430del	NM_001002860.2	NP_001002860.2	Q9P203	BTBD7_HUMAN	BTB (POZ) domain containing 7	856	Poly-Ala.									breast(1)|endometrium(3)|kidney(3)|large_intestine(9)|lung(8)|ovary(1)|pancreas(1)|skin(8)|upper_aerodigestive_tract(1)	35		all_cancers(154;0.08)		Epithelial(152;0.196)|COAD - Colon adenocarcinoma(157;0.212)|all cancers(159;0.223)		GCTTCTCAGAtgctgctgctgct	0.537													8	307	---	---	---	---					
CHEK2P2	0	broad.mit.edu	37	15	20490739	20490739	+	RNA	DEL	G	G	-	rs143465906		TCGA-HZ-7924-01A-11D-2154-08	TCGA-HZ-7924-10A-01D-2154-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c4c1f4b1-d515-4a44-a975-38fa092bca24	cbb96d11-05d7-46a3-ace3-0b6010d95fb2	g.chr15:20490739delG	ENST00000555186.1	+	0	568					NR_038836.1																						GTTACAACCTGtttttttttt	0.423													9	388	---	---	---	---					
GOLGA8DP	0	broad.mit.edu	37	15	22709885	22709885	+	RNA	DEL	G	G	-			TCGA-HZ-7924-01A-11D-2154-08	TCGA-HZ-7924-10A-01D-2154-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c4c1f4b1-d515-4a44-a975-38fa092bca24	cbb96d11-05d7-46a3-ace3-0b6010d95fb2	g.chr15:22709885delG	ENST00000314246.8	-	0	1069																											TATCTAATGTGGGGGGGGCTG	0.537													10	70	---	---	---	---					
SNHG14	0	broad.mit.edu	37	15	25299375	25299376	+	RNA	INS	-	-	A			TCGA-HZ-7924-01A-11D-2154-08	TCGA-HZ-7924-10A-01D-2154-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c4c1f4b1-d515-4a44-a975-38fa092bca24	cbb96d11-05d7-46a3-ace3-0b6010d95fb2	g.chr15:25299375_25299376insA	ENST00000549804.2	+	0	98				SNHG14_ENST00000547292.1_RNA|SNORD116-2_ENST00000384274.1_RNA																							GATGAGTCCCCAAAAAAAACAT	0.495													16	981	---	---	---	---					
FAN1	22909	broad.mit.edu	37	15	31196894	31196894	+	Frame_Shift_Del	DEL	A	A	-			TCGA-HZ-7924-01A-11D-2154-08	TCGA-HZ-7924-10A-01D-2154-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c4c1f4b1-d515-4a44-a975-38fa092bca24	cbb96d11-05d7-46a3-ace3-0b6010d95fb2	g.chr15:31196894delA	ENST00000362065.4	+	2	319	c.28delA	c.(28-30)aafs	p.K11fs	FAN1_ENST00000561594.1_Frame_Shift_Del_p.K11fs|FAN1_ENST00000561607.1_Frame_Shift_Del_p.K11fs|FAN1_ENST00000565466.1_Frame_Shift_Del_p.K11fs	NM_014967.4	NP_055782.3	Q9Y2M0	FAN1_HUMAN	FANCD2/FANCI-associated nuclease 1	11					double-strand break repair via homologous recombination|nucleotide-excision repair, DNA incision	nucleus	5'-3' exonuclease activity|5'-flap endonuclease activity|DNA binding|magnesium ion binding|phosphodiesterase I activity|ubiquitin binding			autonomic_ganglia(2)|breast(2)|cervix(2)|endometrium(7)|kidney(1)|large_intestine(6)|lung(8)|skin(1)	29						ACCTCCTGACAAAAAAAGGCC	0.353								Direct reversal of damage					13	743	---	---	---	---					
SRP14	6727	broad.mit.edu	37	15	40328597	40328599	+	In_Frame_Del	DEL	TGC	TGC	-			TCGA-HZ-7924-01A-11D-2154-08	TCGA-HZ-7924-10A-01D-2154-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c4c1f4b1-d515-4a44-a975-38fa092bca24	cbb96d11-05d7-46a3-ace3-0b6010d95fb2	g.chr15:40328597_40328599delTGC	ENST00000267884.6	-	5	417_419	c.346_348delGCA	c.(346-348)del	p.A116del	SRP14_ENST00000560773.1_In_Frame_Del_p.A36del|SRP14_ENST00000558720.1_In_Frame_Del_p.A36del|SRP14_ENST00000558527.1_5'UTR	NM_003134.4	NP_003125.3	P37108	SRP14_HUMAN	signal recognition particle 14kDa (homologous Alu RNA binding protein)	116	Ala/Thr-rich.				negative regulation of translational elongation|response to drug|SRP-dependent cotranslational protein targeting to membrane	cytosol|signal recognition particle, endoplasmic reticulum targeting	7S RNA binding|endoplasmic reticulum signal peptide binding|protein binding			endometrium(1)|skin(1)|upper_aerodigestive_tract(1)	3		all_cancers(109;7.56e-18)|all_epithelial(112;4.02e-15)|Lung NSC(122;5.63e-11)|all_lung(180;1.4e-09)|Melanoma(134;0.0574)|Ovarian(310;0.0822)|Colorectal(260;0.117)		GBM - Glioblastoma multiforme(113;1.84e-07)|BRCA - Breast invasive adenocarcinoma(123;0.0505)		ctgcggcaggtgctgctgctgct	0.478													14	432	---	---	---	---					
LEO1	123169	broad.mit.edu	37	15	52258134	52258134	+	Frame_Shift_Del	DEL	T	T	-			TCGA-HZ-7924-01A-11D-2154-08	TCGA-HZ-7924-10A-01D-2154-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c4c1f4b1-d515-4a44-a975-38fa092bca24	cbb96d11-05d7-46a3-ace3-0b6010d95fb2	g.chr15:52258134delT	ENST00000299601.5	-	2	686	c.626delA	c.(625-627)agfs	p.K209fs	LEO1_ENST00000315141.5_Frame_Shift_Del_p.K209fs	NM_138792.2	NP_620147.1	Q8WVC0	LEO1_HUMAN	Leo1, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae)	209	Asp-rich.				histone H2B ubiquitination|histone monoubiquitination|regulation of transcription, DNA-dependent|transcription, DNA-dependent	Cdc73/Paf1 complex	protein binding			endometrium(3)|haematopoietic_and_lymphoid_tissue(1)|large_intestine(4)|lung(5)|skin(1)	14				all cancers(107;0.00264)		AGAATTAGCCTTTTCCTCCTC	0.433													7	1662	---	---	---	---					
FAM63B	54629	broad.mit.edu	37	15	59144132	59144134	+	In_Frame_Del	DEL	GCT	GCT	-			TCGA-HZ-7924-01A-11D-2154-08	TCGA-HZ-7924-10A-01D-2154-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c4c1f4b1-d515-4a44-a975-38fa092bca24	cbb96d11-05d7-46a3-ace3-0b6010d95fb2	g.chr15:59144132_59144134delGCT	ENST00000559228.1	+	8	1787_1789	c.1705_1707delGCT	c.(1705-1707)del	p.A574del	FAM63B_ENST00000450403.2_In_Frame_Del_p.A574del			Q8NBR6	FA63B_HUMAN	family with sequence similarity 63, member B	574	Gln-rich.									central_nervous_system(1)|endometrium(1)|kidney(2)|large_intestine(1)|liver(2)|lung(4)|ovary(1)|prostate(1)|skin(1)|urinary_tract(1)	15						ACAAGCAGCAGCTGCTGCTGCTG	0.468													8	603	---	---	---	---					
NARG2	79664	broad.mit.edu	37	15	60745782	60745782	+	Frame_Shift_Del	DEL	A	A	-			TCGA-HZ-7924-01A-11D-2154-08	TCGA-HZ-7924-10A-01D-2154-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c4c1f4b1-d515-4a44-a975-38fa092bca24	cbb96d11-05d7-46a3-ace3-0b6010d95fb2	g.chr15:60745782delA	ENST00000561114.1	-	9	1307	c.1145delT	c.(1144-1146)tcfs	p.F382fs	NARG2_ENST00000261520.4_Intron|NARG2_ENST00000439632.1_Intron	NM_001276385.1	NP_001263314.1	Q659A1	NARG2_HUMAN	NMDA receptor regulated 2	0						nucleus				breast(1)|central_nervous_system(1)|endometrium(7)|kidney(3)|large_intestine(2)|lung(10)|ovary(1)|prostate(1)|skin(4)|upper_aerodigestive_tract(2)	32						CCCTTAGGGGAAAAAAAAAGC	0.338													10	251	---	---	---	---					
DNM1P47	0	broad.mit.edu	37	15	102304934	102304936	+	RNA	DEL	TCT	TCT	-	rs72450638		TCGA-HZ-7924-01A-11D-2154-08	TCGA-HZ-7924-10A-01D-2154-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c4c1f4b1-d515-4a44-a975-38fa092bca24	cbb96d11-05d7-46a3-ace3-0b6010d95fb2	g.chr15:102304934_102304936delTCT	ENST00000561463.1	+	0	12980_12982																											AAGGAGTTCATCTTCTCAGAGCT	0.586													7	95	---	---	---	---					
Z97634.5	0	broad.mit.edu	37	16	437259	437260	+	RNA	DEL	AT	AT	-			TCGA-HZ-7924-01A-11D-2154-08	TCGA-HZ-7924-10A-01D-2154-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c4c1f4b1-d515-4a44-a975-38fa092bca24	cbb96d11-05d7-46a3-ace3-0b6010d95fb2	g.chr16:437259_437260delAT	ENST00000412293.1	+	0	521					NR_024453.2																						CTAATTCTAAATATATATATAT	0.421													10	110	---	---	---	---					
RRN3P2	0	broad.mit.edu	37	16	29113498	29113498	+	RNA	DEL	T	T	-	rs11366120		TCGA-HZ-7924-01A-11D-2154-08	TCGA-HZ-7924-10A-01D-2154-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c4c1f4b1-d515-4a44-a975-38fa092bca24	cbb96d11-05d7-46a3-ace3-0b6010d95fb2	g.chr16:29113498delT	ENST00000564580.1	+	0	1360																											AGGAGGTGGAttttttttttc	0.542													15	47	---	---	---	---					
NPIPB11	728888	broad.mit.edu	37	16	29395282	29395293	+	In_Frame_Del	DEL	GCTGAGGGTGGA	GCTGAGGGTGGA	-			TCGA-HZ-7924-01A-11D-2154-08	TCGA-HZ-7924-10A-01D-2154-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c4c1f4b1-d515-4a44-a975-38fa092bca24	cbb96d11-05d7-46a3-ace3-0b6010d95fb2	g.chr16:29395282_29395293delGCTGAGGGTGGA	ENST00000524087.1	-	8	1034_1045	c.960_971delTCCACCCTCAGC	c.(958-972)gcg>gc	p.APPSA320del	SNX29P2_ENST00000398878.3_lincRNA					nuclear pore complex interacting protein family, member B11																		ATTATCATCCgctgagggtggagctgagggtg	0.575													7	89	---	---	---	---					
TAOK2	9344	broad.mit.edu	37	16	29994531	29994533	+	In_Frame_Del	DEL	GAG	GAG	-			TCGA-HZ-7924-01A-11D-2154-08	TCGA-HZ-7924-10A-01D-2154-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c4c1f4b1-d515-4a44-a975-38fa092bca24	cbb96d11-05d7-46a3-ace3-0b6010d95fb2	g.chr16:29994531_29994533delGAG	ENST00000308893.4	+	12	2181_2183	c.1138_1140delGAG	c.(1138-1140)del	p.E392del	TAOK2_ENST00000543033.1_In_Frame_Del_p.E392del|TAOK2_ENST00000416441.2_In_Frame_Del_p.E219del|TAOK2_ENST00000279394.3_In_Frame_Del_p.E392del	NM_001252043.1|NM_016151.3	NP_001238972.1|NP_057235.2	Q9UL54	TAOK2_HUMAN	TAO kinase 2	392	Glu-rich.				actin cytoskeleton organization|activation of MAPKK activity|apoptosis|cell migration|focal adhesion assembly|positive regulation of JNK cascade|protein targeting to membrane|regulation of cell growth|regulation of cell shape|response to stress	cytoplasmic vesicle membrane|cytoskeleton|dendrite|integral to membrane|nucleolus	ATP binding|protein serine/threonine kinase activity			breast(1)|endometrium(3)|large_intestine(5)|lung(8)|ovary(1)|prostate(3)|skin(1)	22						CAACgaggaagaggaggaggagg	0.611													8	357	---	---	---	---					
SRCAP	10847	broad.mit.edu	37	16	30736370	30736371	+	Frame_Shift_Ins	INS	-	-	C			TCGA-HZ-7924-01A-11D-2154-08	TCGA-HZ-7924-10A-01D-2154-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c4c1f4b1-d515-4a44-a975-38fa092bca24	cbb96d11-05d7-46a3-ace3-0b6010d95fb2	g.chr16:30736370_30736371insC	ENST00000262518.4	+	25	6010_6011	c.5625_5626insC	c.(5623-5628)caccccfs	p.HP1875fs	SRCAP_ENST00000344771.4_Frame_Shift_Ins_p.HP1717fs|SRCAP_ENST00000395059.2_Frame_Shift_Ins_p.HP1813fs	NM_006662.2	NP_006653.2	Q6ZRS2	SRCAP_HUMAN	Snf2-related CREBBP activator protein	1875	Pro-rich.				interspecies interaction between organisms|regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	Golgi apparatus|nucleus|protein complex	ATP binding|DNA binding|helicase activity|histone acetyltransferase activity|transcription coactivator activity			NS(1)|breast(3)|cervix(3)|endometrium(9)|haematopoietic_and_lymphoid_tissue(1)|kidney(8)|large_intestine(22)|liver(3)|lung(62)|ovary(6)|pancreas(1)|prostate(4)|skin(5)|upper_aerodigestive_tract(3)|urinary_tract(5)	136			Colorectal(24;0.198)			CTCGACGCCAGCCCCCCCCACC	0.569													14	611	---	---	---	---					
RP11-51O6.1	0	broad.mit.edu	37	16	61089302	61089302	+	RNA	DEL	C	C	-	rs80101907		TCGA-HZ-7924-01A-11D-2154-08	TCGA-HZ-7924-10A-01D-2154-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c4c1f4b1-d515-4a44-a975-38fa092bca24	cbb96d11-05d7-46a3-ace3-0b6010d95fb2	g.chr16:61089302delC	ENST00000591758.1	-	0	566																											GCttcttcttctttttttttt	0.244													9	103	---	---	---	---					
CTRL	1506	broad.mit.edu	37	16	67963919	67963919	+	Frame_Shift_Del	DEL	T	T	-			TCGA-HZ-7924-01A-11D-2154-08	TCGA-HZ-7924-10A-01D-2154-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c4c1f4b1-d515-4a44-a975-38fa092bca24	cbb96d11-05d7-46a3-ace3-0b6010d95fb2	g.chr16:67963919delT	ENST00000574481.1	-	7	1274	c.713delA	c.(712-714)acfs	p.N238fs		NM_001907.2	NP_001898.1	P40313	CTRL_HUMAN	chymotrypsin-like	238	Peptidase S1.				digestion|proteolysis	extracellular space	serine-type endopeptidase activity			kidney(1)|large_intestine(2)|urinary_tract(1)	4		Ovarian(137;0.192)		OV - Ovarian serous cystadenocarcinoma(108;0.00412)|Epithelial(162;0.018)|all cancers(182;0.118)		CACATTGCAGTTTTTGGTGCC	0.552													8	646	---	---	---	---					
NOB1	28987	broad.mit.edu	37	16	69782978	69782980	+	In_Frame_Del	DEL	TCC	TCC	-			TCGA-HZ-7924-01A-11D-2154-08	TCGA-HZ-7924-10A-01D-2154-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c4c1f4b1-d515-4a44-a975-38fa092bca24	cbb96d11-05d7-46a3-ace3-0b6010d95fb2	g.chr16:69782978_69782980delTCC	ENST00000268802.5	-	6	596_598	c.567_569delGGA	c.(565-570)gaa>ga	p.EE189del		NM_014062.1	NP_054781.1	Q9ULX3	NOB1_HUMAN	NIN1/RPN12 binding protein 1 homolog (S. cerevisiae)	189	Poly-Glu.					nucleus	metal ion binding|protein binding			breast(2)|cervix(1)|endometrium(1)|large_intestine(1)|lung(3)|skin(1)|upper_aerodigestive_tract(1)|urinary_tract(1)	11						CCCGTTTTCTTCCTCCTCCTCCT	0.522													11	556	---	---	---	---					
ZFHX3	463	broad.mit.edu	37	16	72822564	72822566	+	In_Frame_Del	DEL	TGC	TGC	-			TCGA-HZ-7924-01A-11D-2154-08	TCGA-HZ-7924-10A-01D-2154-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c4c1f4b1-d515-4a44-a975-38fa092bca24	cbb96d11-05d7-46a3-ace3-0b6010d95fb2	g.chr16:72822564_72822566delTGC	ENST00000268489.5	-	10	10281_10283	c.9609_9611delGCA	c.(9607-9612)caa>ca	p.QQ3203del	ZFHX3_ENST00000397992.5_In_Frame_Del_p.QQ2289del	NM_006885.3	NP_008816.3	Q15911	ZFHX3_HUMAN	zinc finger homeobox 3	3203	Poly-Gln.				muscle organ development|negative regulation of myoblast differentiation|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transcription, DNA-dependent|positive regulation of myoblast differentiation	transcription factor complex	enzyme binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|transcription regulatory region DNA binding|zinc ion binding			NS(3)|breast(7)|cervix(2)|endometrium(18)|haematopoietic_and_lymphoid_tissue(5)|kidney(8)|large_intestine(22)|liver(1)|lung(46)|ovary(5)|pancreas(1)|prostate(15)|skin(6)|stomach(1)|upper_aerodigestive_tract(2)|urinary_tract(11)	153		Ovarian(137;0.13)				cacctgtggttgctgctgctgct	0.650													18	672	---	---	---	---					
TUBB8P7	0	broad.mit.edu	37	16	90161003	90161004	+	RNA	INS	-	-	GG	rs142805492	by1000genomes	TCGA-HZ-7924-01A-11D-2154-08	TCGA-HZ-7924-10A-01D-2154-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c4c1f4b1-d515-4a44-a975-38fa092bca24	cbb96d11-05d7-46a3-ace3-0b6010d95fb2	g.chr16:90161003_90161004insGG	ENST00000564451.1	+	0	894				TUBB8P7_ENST00000567960.1_RNA																							TCCGTGCGCTCGGGGCCCTTCG	0.673													8	388	---	---	---	---					
WRAP53	55135	broad.mit.edu	37	17	7606714	7606715	+	Frame_Shift_Ins	INS	-	-	G	rs146634933		TCGA-HZ-7924-01A-11D-2154-08	TCGA-HZ-7924-10A-01D-2154-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c4c1f4b1-d515-4a44-a975-38fa092bca24	cbb96d11-05d7-46a3-ace3-0b6010d95fb2	g.chr17:7606714_7606715insG	ENST00000316024.5	+	10	3905_3906	c.1557_1558insG	c.(1555-1560)tgggggfs	p.WG519fs	WRAP53_ENST00000396463.2_Frame_Shift_Ins_p.WG519fs|WRAP53_ENST00000431639.2_Frame_Shift_Ins_p.WG519fs|WRAP53_ENST00000534050.1_Frame_Shift_Ins_p.WG486fs|WRAP53_ENST00000457584.2_Frame_Shift_Ins_p.WG519fs			Q9BUR4	WAP53_HUMAN	WD repeat containing, antisense to TP53	519					positive regulation of telomerase activity|telomere formation via telomerase	Cajal body|cytoplasm|telomerase holoenzyme complex	protein binding|RNA binding			endometrium(4)|kidney(1)|large_intestine(2)|lung(7)|prostate(2)|stomach(2)	18						TCTGGTGGTGTGGGGGGGCGCC	0.599													7	358	---	---	---	---					
TRPV2	51393	broad.mit.edu	37	17	16335490	16335492	+	In_Frame_Del	DEL	TGC	TGC	-			TCGA-HZ-7924-01A-11D-2154-08	TCGA-HZ-7924-10A-01D-2154-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c4c1f4b1-d515-4a44-a975-38fa092bca24	cbb96d11-05d7-46a3-ace3-0b6010d95fb2	g.chr17:16335490_16335492delTGC	ENST00000338560.7	+	12	2264_2266	c.1865_1867delTGC	c.(1864-1869)gtg>g	p.VL622del	TRPV2_ENST00000577397.1_In_Frame_Del_p.VL192del|TRPV2_ENST00000583241.1_3'UTR	NM_016113.4	NP_057197.2	Q9Y5S1	TRPV2_HUMAN	transient receptor potential cation channel, subfamily V, member 2	622					sensory perception	integral to plasma membrane|melanosome	calcium channel activity			breast(1)|central_nervous_system(1)|endometrium(2)|kidney(1)|large_intestine(7)|lung(9)|ovary(1)|pancreas(1)|prostate(2)|stomach(3)	28				UCEC - Uterine corpus endometrioid carcinoma (92;0.0837)		CGCGGCATGGTGCTGCTGCTGCT	0.596													15	383	---	---	---	---					
DHRS7B	25979	broad.mit.edu	37	17	21094331	21094333	+	In_Frame_Del	DEL	GAA	GAA	-			TCGA-HZ-7924-01A-11D-2154-08	TCGA-HZ-7924-10A-01D-2154-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c4c1f4b1-d515-4a44-a975-38fa092bca24	cbb96d11-05d7-46a3-ace3-0b6010d95fb2	g.chr17:21094331_21094333delGAA	ENST00000395511.3	+	7	1163_1165	c.843_845delGAA	c.(841-846)ggg>gg	p.GK281del	DHRS7B_ENST00000581463.1_Intron|DHRS7B_ENST00000579303.1_In_Frame_Del_p.GK266del	NM_015510.4	NP_056325.2	Q6IAN0	DRS7B_HUMAN	dehydrogenase/reductase (SDR family) member 7B	281						integral to membrane|peroxisomal membrane	binding|oxidoreductase activity			endometrium(2)|haematopoietic_and_lymphoid_tissue(1)|lung(2)|pancreas(2)	7						CTGCTGTGGGGAAGAAGAAGAAA	0.507													9	911	---	---	---	---					
KRTAP4-1	85285	broad.mit.edu	37	17	39340796	39340852	+	In_Frame_Del	DEL	CGGCAGCAGCTGGACATACCACAGCTGGGGTGGCAGGTGGTCTGACAGCAGAGTGGG	CGGCAGCAGCTGGACATACCACAGCTGGGGTGGCAGGTGGTCTGACAGCAGAGTGGG	-	rs483929	by1000genomes	TCGA-HZ-7924-01A-11D-2154-08	TCGA-HZ-7924-10A-01D-2154-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c4c1f4b1-d515-4a44-a975-38fa092bca24	cbb96d11-05d7-46a3-ace3-0b6010d95fb2	g.chr17:39340796_39340852delCGGCAGCAGCTGGACATACCACAGCTGGGGTGGCAGGTGGTCTGACAGCAGAGTGGG	ENST00000398472.1	-	1	742_798	c.255_311delCCCACTCTGCTGTCAGACCACCTGCCACCCCAGCTGTGGTATGTCCAGCTGCTGCCG	c.(253-312)cgt>cg	p.RPLCCQTTCHPSCGMSSCCR85del				Q9BYQ7	KRA41_HUMAN	keratin associated protein 4-1	85	18 X 5 AA repeats of C-C-[GRQC]-[SPT]- [VSTL].		Missing (in allele KAP4.10).			keratin filament		p.H90_C108delHPSCGMSSCCRPLCCQTTC(2)|p.H94_C112delHPSCGMSSCCRPLCCQTTC(2)		kidney(1)|large_intestine(1)|lung(1)|prostate(1)|upper_aerodigestive_tract(1)	5		Breast(137;0.000496)	STAD - Stomach adenocarcinoma(17;0.000449)			ACAGAGTGGACGGCAGCAGCTGGACATACCACAGCTGGGGTGGCAGGTGGTCTGACAGCAGAGTGGGCGGCAGCAGC	0.646													14	368	---	---	---	---					
CCDC43	124808	broad.mit.edu	37	17	42756252	42756253	+	Frame_Shift_Ins	INS	-	-	T			TCGA-HZ-7924-01A-11D-2154-08	TCGA-HZ-7924-10A-01D-2154-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c4c1f4b1-d515-4a44-a975-38fa092bca24	cbb96d11-05d7-46a3-ace3-0b6010d95fb2	g.chr17:42756252_42756253insT	ENST00000315286.8	-	5	654_655	c.646_647insA	c.(646-648)gacfs	p.D216fs	C17orf104_ENST00000588805.1_Intron|CCDC43_ENST00000588210.1_Frame_Shift_Ins_p.D219fs|CCDC43_ENST00000457422.2_3'UTR	NM_144609.2	NP_653210.2	Q96MW1	CCD43_HUMAN	coiled-coil domain containing 43	216										lung(2)	2		Prostate(33;0.0322)				TCTCTGTGTCCTTTTTTTTTCC	0.465													7	179	---	---	---	---					
CDC27	996	broad.mit.edu	37	17	45219612	45219612	+	Frame_Shift_Del	DEL	A	A	-			TCGA-HZ-7924-01A-11D-2154-08	TCGA-HZ-7924-10A-01D-2154-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c4c1f4b1-d515-4a44-a975-38fa092bca24	cbb96d11-05d7-46a3-ace3-0b6010d95fb2	g.chr17:45219612delA	ENST00000066544.3	-	11	1454	c.1361delT	c.(1360-1362)cafs	p.L454fs	CDC27_ENST00000446365.2_Frame_Shift_Del_p.L393fs|CDC27_ENST00000531206.1_Frame_Shift_Del_p.L460fs|CDC27_ENST00000527547.1_Frame_Shift_Del_p.L454fs	NM_001114091.1|NM_001256.3	NP_001107563.1|NP_001247.3	P30260	CDC27_HUMAN	cell division cycle 27	454					anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|cell proliferation|mitotic cell cycle spindle assembly checkpoint|mitotic metaphase/anaphase transition|negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|protein K11-linked ubiquitination	anaphase-promoting complex|centrosome|cytosol|nucleoplasm|spindle microtubule	protein phosphatase binding			NS(1)|breast(5)|central_nervous_system(3)|cervix(1)|endometrium(2)|kidney(17)|large_intestine(18)|lung(11)|ovary(5)|pancreas(1)|prostate(19)|skin(5)|upper_aerodigestive_tract(2)	90						TGCTTTTTGTAGATTAAAGGC	0.308													16	167	---	---	---	---					
PRR11	55771	broad.mit.edu	37	17	57247170	57247171	+	Frame_Shift_Ins	INS	-	-	A			TCGA-HZ-7924-01A-11D-2154-08	TCGA-HZ-7924-10A-01D-2154-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c4c1f4b1-d515-4a44-a975-38fa092bca24	cbb96d11-05d7-46a3-ace3-0b6010d95fb2	g.chr17:57247170_57247171insA	ENST00000262293.4	+	2	369_370	c.57_58insA	c.(55-60)ttaaaafs	p.LK19fs		NM_018304.3	NP_060774.2	Q96HE9	PRR11_HUMAN	proline rich 11	19								p.E23fs*9(3)|p.E23fs*46(1)		breast(1)|kidney(1)|large_intestine(2)|lung(8)|ovary(3)|pancreas(1)	16	Medulloblastoma(34;0.0922)|all_neural(34;0.101)					AAAGATTATTCAAAAAAAAAGA	0.361													11	437	---	---	---	---					
RP11-178C3.2	0	broad.mit.edu	37	17	58050857	58050857	+	RNA	DEL	G	G	-			TCGA-HZ-7924-01A-11D-2154-08	TCGA-HZ-7924-10A-01D-2154-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c4c1f4b1-d515-4a44-a975-38fa092bca24	cbb96d11-05d7-46a3-ace3-0b6010d95fb2	g.chr17:58050857delG	ENST00000586209.1	+	0	158																											TTTTTTTTTTGGCAGTTTTTA	0.423													11	89	---	---	---	---					
ADNP2	22850	broad.mit.edu	37	18	77894260	77894261	+	Frame_Shift_Ins	INS	-	-	C			TCGA-HZ-7924-01A-11D-2154-08	TCGA-HZ-7924-10A-01D-2154-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c4c1f4b1-d515-4a44-a975-38fa092bca24	cbb96d11-05d7-46a3-ace3-0b6010d95fb2	g.chr18:77894260_77894261insC	ENST00000262198.4	+	4	1419_1420	c.964_965insC	c.(964-966)cccfs	p.P322fs		NM_014913.3	NP_055728.1	Q6IQ32	ADNP2_HUMAN	ADNP homeobox 2	322	Pro-rich.				cellular response to oxidative stress|cellular response to retinoic acid|negative regulation of cell death|neuron differentiation|positive regulation of cell growth	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding	p.A325fs*59(1)		breast(4)|central_nervous_system(1)|cervix(1)|endometrium(1)|kidney(3)|large_intestine(9)|liver(1)|lung(15)|ovary(5)|prostate(2)	42		all_cancers(4;1.06e-15)|all_epithelial(4;2.36e-10)|all_lung(4;0.000302)|Lung NSC(4;0.000518)|Esophageal squamous(42;0.0212)|Ovarian(4;0.0256)|all_hematologic(56;0.15)|Melanoma(33;0.2)		Epithelial(2;1.1e-11)|OV - Ovarian serous cystadenocarcinoma(15;7.54e-09)|BRCA - Breast invasive adenocarcinoma(31;0.00247)|STAD - Stomach adenocarcinoma(84;0.164)		CCTCACTCATTCCCCCCCTGCT	0.644													8	440	---	---	---	---					
TNFSF9	8744	broad.mit.edu	37	19	6531149	6531151	+	In_Frame_Del	DEL	GCT	GCT	-			TCGA-HZ-7924-01A-11D-2154-08	TCGA-HZ-7924-10A-01D-2154-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c4c1f4b1-d515-4a44-a975-38fa092bca24	cbb96d11-05d7-46a3-ace3-0b6010d95fb2	g.chr19:6531149_6531151delGCT	ENST00000245817.3	+	1	140_142	c.102_104delGCT	c.(100-105)ggg>gg	p.GL34del		NM_003811.3	NP_003802.1	P41273	TNFL9_HUMAN	tumor necrosis factor (ligand) superfamily, member 9	34					apoptosis|cell proliferation|cell-cell signaling|immune response|signal transduction	extracellular space|integral to membrane	cytokine activity|tumor necrosis factor receptor binding			central_nervous_system(1)|lung(1)|ovary(1)|prostate(1)|skin(1)	5						TGGTCGCGGGgctgctgctgctg	0.768													7	199	---	---	---	---					
RETN	56729	broad.mit.edu	37	19	7734228	7734230	+	In_Frame_Del	DEL	CTC	CTC	-			TCGA-HZ-7924-01A-11D-2154-08	TCGA-HZ-7924-10A-01D-2154-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c4c1f4b1-d515-4a44-a975-38fa092bca24	cbb96d11-05d7-46a3-ace3-0b6010d95fb2	g.chr19:7734228_7734230delCTC	ENST00000221515.2	+	2	104_106	c.16_18delCTC	c.(16-18)del	p.L9del	RETN_ENST00000381324.2_In_Frame_Del_p.L9del	NM_001193374.1|NM_020415.3	NP_001180303.1|NP_065148.1	Q9HD89	RETN_HUMAN	resistin	9							hormone activity			ovary(1)	1						AGCTCTCTGTCTCCTCCTCCTCC	0.596													9	969	---	---	---	---					
ZNF626	199777	broad.mit.edu	37	19	20808338	20808338	+	Frame_Shift_Del	DEL	T	T	-			TCGA-HZ-7924-01A-11D-2154-08	TCGA-HZ-7924-10A-01D-2154-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c4c1f4b1-d515-4a44-a975-38fa092bca24	cbb96d11-05d7-46a3-ace3-0b6010d95fb2	g.chr19:20808338delT	ENST00000601440.1	-	4	491	c.345delA	c.(343-345)aafs	p.K115fs	CTC-513N18.7_ENST00000595094.1_lincRNA	NM_001076675.2	NP_001070143.1	Q68DY1	ZN626_HUMAN	zinc finger protein 626	115					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			breast(1)|endometrium(1)|lung(3)|skin(1)	6						TTATACATCCTTTTTTTAACT	0.353													7	637	---	---	---	---					
SPRED3	399473	broad.mit.edu	37	19	38882864	38882866	+	In_Frame_Del	DEL	CCT	CCT	-			TCGA-HZ-7924-01A-11D-2154-08	TCGA-HZ-7924-10A-01D-2154-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c4c1f4b1-d515-4a44-a975-38fa092bca24	cbb96d11-05d7-46a3-ace3-0b6010d95fb2	g.chr19:38882864_38882866delCCT	ENST00000587013.1	+	3	569_571	c.491_493delCCT	c.(490-495)ccc>c	p.PS164del	SPRED3_ENST00000587564.2_3'UTR|SPRED3_ENST00000586301.1_In_Frame_Del_p.PS120del|SPRED3_ENST00000338502.4_In_Frame_Del_p.PS120del			Q2MJR0	SPRE3_HUMAN	sprouty-related, EVH1 domain containing 3	120					multicellular organismal development					central_nervous_system(2)|large_intestine(1)|lung(5)|skin(1)	9	all_cancers(60;3.4e-06)		Lung(45;0.00172)|LUSC - Lung squamous cell carcinoma(53;0.00272)			TCACTCAccccctcctcctcctc	0.645													7	87	---	---	---	---					
RYR1	6261	broad.mit.edu	37	19	38948159	38948160	+	Frame_Shift_Del	DEL	TG	TG	-			TCGA-HZ-7924-01A-11D-2154-08	TCGA-HZ-7924-10A-01D-2154-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c4c1f4b1-d515-4a44-a975-38fa092bca24	cbb96d11-05d7-46a3-ace3-0b6010d95fb2	g.chr19:38948159_38948160delTG	ENST00000355481.4	+	17	1945_1946	c.1814_1815delTG	c.(1813-1815)cfs	p.L605fs	RYR1_ENST00000359596.3_Frame_Shift_Del_p.L605fs|RYR1_ENST00000360985.3_Frame_Shift_Del_p.L605fs	NM_000540.2|NM_001042723.1	NP_000531.2|NP_001036188.1	P21817	RYR1_HUMAN	ryanodine receptor 1 (skeletal)	605	B30.2/SPRY 1.				muscle contraction|release of sequestered calcium ion into cytosol|response to caffeine|response to hypoxia	cell cortex|cytosol|I band|integral to plasma membrane|junctional sarcoplasmic reticulum membrane|smooth endoplasmic reticulum|terminal cisterna	calcium ion binding|calmodulin binding|receptor activity|ryanodine-sensitive calcium-release channel activity			NS(4)|autonomic_ganglia(2)|breast(3)|central_nervous_system(5)|endometrium(26)|haematopoietic_and_lymphoid_tissue(3)|kidney(34)|large_intestine(42)|liver(1)|lung(106)|ovary(11)|pancreas(5)|prostate(9)|skin(12)|stomach(11)|upper_aerodigestive_tract(4)|urinary_tract(7)	285	all_cancers(60;7.91e-06)		Lung(45;0.00172)|LUSC - Lung squamous cell carcinoma(53;0.00272)		Dantrolene(DB01219)	CTATGCTCCCTGTGTGTGTGTA	0.530													8	1177	---	---	---	---					
RSPH6A	81492	broad.mit.edu	37	19	46299165	46299167	+	In_Frame_Del	DEL	CCT	CCT	-	rs62639328	byFrequency	TCGA-HZ-7924-01A-11D-2154-08	TCGA-HZ-7924-10A-01D-2154-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c4c1f4b1-d515-4a44-a975-38fa092bca24	cbb96d11-05d7-46a3-ace3-0b6010d95fb2	g.chr19:46299165_46299167delCCT	ENST00000221538.3	-	6	2256_2258	c.2114_2116delAGG	c.(2113-2118)ggc>g	p.EG705del	RSPH6A_ENST00000600188.1_In_Frame_Del_p.EG441del|RSPH6A_ENST00000597055.1_3'UTR	NM_030785.3	NP_110412.1	Q9H0K4	RSH6A_HUMAN	radial spoke head 6 homolog A (Chlamydomonas)	705	Glu-rich.					intracellular				central_nervous_system(1)|cervix(1)|endometrium(2)|kidney(1)|large_intestine(6)|liver(1)|lung(14)|ovary(2)|prostate(1)|skin(1)|urinary_tract(2)	32						tcctcctcgccctcctcctcctc	0.586													8	818	---	---	---	---					
FUZ	80199	broad.mit.edu	37	19	50310483	50310485	+	In_Frame_Del	DEL	CAG	CAG	-			TCGA-HZ-7924-01A-11D-2154-08	TCGA-HZ-7924-10A-01D-2154-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c4c1f4b1-d515-4a44-a975-38fa092bca24	cbb96d11-05d7-46a3-ace3-0b6010d95fb2	g.chr19:50310483_50310485delCAG	ENST00000313777.4	-	11	1343_1345	c.1180_1182delCTG	c.(1180-1182)del	p.L394del	FUZ_ENST00000533418.1_In_Frame_Del_p.L344del|FUZ_ENST00000528094.1_In_Frame_Del_p.L358del|FUZ_ENST00000445575.2_Intron	NM_025129.4	NP_079405.2	Q9BT04	FUZZY_HUMAN	fuzzy planar cell polarity protein	394	Leu-rich.				cilium assembly|embryonic body morphogenesis|embryonic skeletal system morphogenesis|establishment of planar polarity|hair follicle development|neural tube closure|protein transport|regulation of smoothened signaling pathway	cytoplasm|cytoskeleton				endometrium(1)|lung(3)	4		all_lung(116;1.05e-05)|Lung NSC(112;3.77e-05)|all_neural(266;0.107)|Ovarian(192;0.231)		OV - Ovarian serous cystadenocarcinoma(262;0.00793)|GBM - Glioblastoma multiforme(134;0.0116)		TCTGGGGAGACAGCAGCAGCAGC	0.635													13	303	---	---	---	---					
ZNF416	55659	broad.mit.edu	37	19	58084579	58084579	+	Frame_Shift_Del	DEL	A	A	-			TCGA-HZ-7924-01A-11D-2154-08	TCGA-HZ-7924-10A-01D-2154-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c4c1f4b1-d515-4a44-a975-38fa092bca24	cbb96d11-05d7-46a3-ace3-0b6010d95fb2	g.chr19:58084579delA	ENST00000196489.3	-	4	915	c.693delT	c.(691-693)ttfs	p.F231fs		NM_017879.1	NP_060349.1	Q9BWM5	ZN416_HUMAN	zinc finger protein 416	231					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			breast(1)|endometrium(3)|large_intestine(5)|lung(12)|prostate(1)	22		Colorectal(82;0.000256)|all_neural(62;0.0577)|Ovarian(87;0.156)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0259)		CTCTAGGGTGAAAAAAAGTGT	0.453													7	1176	---	---	---	---					
FRG1B	0	broad.mit.edu	37	20	29628310	29628312	+	In_Frame_Del	DEL	AGG	AGG	-	rs111939959		TCGA-HZ-7924-01A-11D-2154-08	TCGA-HZ-7924-10A-01D-2154-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c4c1f4b1-d515-4a44-a975-38fa092bca24	cbb96d11-05d7-46a3-ace3-0b6010d95fb2	g.chr20:29628310_29628312delAGG	ENST00000278882.3	+	6	692_694	c.312_314delAGG	c.(310-315)gca>gc	p.AG104del	FRG1B_ENST00000358464.4_In_Frame_Del_p.AG104del|FRG1B_ENST00000439954.2_In_Frame_Del_p.AG109del																endometrium(10)|kidney(21)|lung(3)|pancreas(1)|prostate(9)|urinary_tract(9)	53						GTAAAACAGCAGGAGAAGAAGAA	0.355													7	668	---	---	---	---					
BCL2L1	598	broad.mit.edu	37	20	30309591	30309591	+	Frame_Shift_Del	DEL	A	A	-			TCGA-HZ-7924-01A-11D-2154-08	TCGA-HZ-7924-10A-01D-2154-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c4c1f4b1-d515-4a44-a975-38fa092bca24	cbb96d11-05d7-46a3-ace3-0b6010d95fb2	g.chr20:30309591delA	ENST00000307677.4	-	2	841	c.431delT	c.(430-432)tcfs	p.F144fs	BCL2L1_ENST00000376055.4_Intron|BCL2L1_ENST00000376062.2_Frame_Shift_Del_p.F144fs|BCL2L1_ENST00000420653.1_Frame_Shift_Del_p.F144fs	NM_138578.1	NP_612815.1	Q07817	B2CL1_HUMAN	BCL2-like 1	144					induction of apoptosis by intracellular signals|negative regulation of establishment of protein localization in plasma membrane|negative regulation of survival gene product expression|regulation of mitochondrial membrane permeability|regulation of mitochondrial membrane potential|release of cytochrome c from mitochondria|response to cytokine stimulus	integral to membrane|mitochondrial outer membrane|nuclear membrane	BH3 domain binding|identical protein binding			breast(1)|central_nervous_system(1)|large_intestine(2)|lung(4)|pancreas(1)|upper_aerodigestive_tract(1)|urinary_tract(1)	11	all_cancers(5;3.47e-06)|all_epithelial(3;1.83e-06)|Lung NSC(7;2.08e-06)|all_lung(7;3.63e-06)|all_hematologic(12;0.158)|Ovarian(7;0.198)		Epithelial(4;2.97e-06)|all cancers(5;3.21e-05)|OV - Ovarian serous cystadenocarcinoma(3;0.00052)|Colorectal(19;0.0055)|COAD - Colon adenocarcinoma(19;0.0264)			GCCGAAGGAGAAAAAGGCCAC	0.542													9	1603	---	---	---	---					
CTCFL	140690	broad.mit.edu	37	20	56099187	56099187	+	Frame_Shift_Del	DEL	T	T	-			TCGA-HZ-7924-01A-11D-2154-08	TCGA-HZ-7924-10A-01D-2154-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c4c1f4b1-d515-4a44-a975-38fa092bca24	cbb96d11-05d7-46a3-ace3-0b6010d95fb2	g.chr20:56099187delT	ENST00000426658.2	-	1	736	c.75delA	c.(73-75)aafs	p.K25fs	CTCFL_ENST00000422109.2_Frame_Shift_Del_p.K25fs|CTCFL_ENST00000371196.2_Frame_Shift_Del_p.K25fs|CTCFL_ENST00000422869.2_Frame_Shift_Del_p.K25fs|CTCFL_ENST00000429804.2_Frame_Shift_Del_p.K25fs|CTCFL_ENST00000539382.1_Intron|CTCFL_ENST00000423479.2_Frame_Shift_Del_p.K25fs|CTCFL_ENST00000432255.2_Frame_Shift_Del_p.K25fs|CTCFL_ENST00000243914.3_Frame_Shift_Del_p.K25fs|CTCFL_ENST00000433949.2_Frame_Shift_Del_p.K25fs|CTCFL_ENST00000502686.2_Intron			Q8NI51	CTCFL_HUMAN	CCCTC-binding factor (zinc finger protein)-like	25					cell cycle|DNA methylation involved in gamete generation|histone methylation|positive regulation of transcription, DNA-dependent|regulation of gene expression by genetic imprinting|regulation of histone H3-K4 methylation|transcription, DNA-dependent	cytoplasm|nucleus	histone binding|sequence-specific DNA binding|transcription regulatory region DNA binding|zinc ion binding			NS(1)|breast(1)|cervix(2)|endometrium(6)|kidney(4)|large_intestine(9)|lung(28)|ovary(2)|prostate(1)|skin(2)|upper_aerodigestive_tract(1)|urinary_tract(1)	58	Lung NSC(12;0.00132)|all_lung(29;0.00433)|Melanoma(10;0.242)		BRCA - Breast invasive adenocarcinoma(13;3.95e-12)|Epithelial(14;3.41e-08)|all cancers(14;2.09e-07)			CCTTCAGGCCTTTTTCCGGCA	0.502													9	1766	---	---	---	---					
LINC00478	0	broad.mit.edu	37	21	17443416	17443417	+	RNA	DEL	TG	TG	-			TCGA-HZ-7924-01A-11D-2154-08	TCGA-HZ-7924-10A-01D-2154-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c4c1f4b1-d515-4a44-a975-38fa092bca24	cbb96d11-05d7-46a3-ace3-0b6010d95fb2	g.chr21:17443416_17443417delTG	ENST00000458468.1	+	0	27					NR_027790.1																						TTTTTCTTTTTGTGTGTGTGTG	0.431													7	768	---	---	---	---					
SCAF4	57466	broad.mit.edu	37	21	33044257	33044259	+	In_Frame_Del	DEL	GCT	GCT	-			TCGA-HZ-7924-01A-11D-2154-08	TCGA-HZ-7924-10A-01D-2154-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c4c1f4b1-d515-4a44-a975-38fa092bca24	cbb96d11-05d7-46a3-ace3-0b6010d95fb2	g.chr21:33044257_33044259delGCT	ENST00000286835.7	-	20	3279_3281	c.2897_2899delAGC	c.(2896-2901)cca>c	p.QP966del	SCAF4_ENST00000399804.1_In_Frame_Del_p.QP944del|SCAF4_ENST00000434667.3_In_Frame_Del_p.QP951del	NM_020706.2	NP_065757.1	O95104	SFR15_HUMAN	SR-related CTD-associated factor 4	966	Poly-Gln.					nucleus	nucleotide binding|RNA binding			NS(1)|breast(2)|endometrium(9)|kidney(9)|large_intestine(11)|lung(15)|prostate(1)|skin(2)|stomach(1)|upper_aerodigestive_tract(1)|urinary_tract(2)	54						GATGGTGgtggctgctgctgctg	0.581													24	616	---	---	---	---					
KRTAP10-6	386674	broad.mit.edu	37	21	46012219	46012220	+	In_Frame_Ins	INS	-	-	GGGGCGCAGCAGCTG	rs71199613		TCGA-HZ-7924-01A-11D-2154-08	TCGA-HZ-7924-10A-01D-2154-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c4c1f4b1-d515-4a44-a975-38fa092bca24	cbb96d11-05d7-46a3-ace3-0b6010d95fb2	g.chr21:46012219_46012220insGGGGCGCAGCAGCTG	ENST00000400368.1	-	1	166_167	c.146_147insCAGCTGCTGCGCCCC	c.(145-147)cgc>cCAGCTGCTGCGCCCCgc	p.48_49insPAAAP	TSPEAR_ENST00000323084.4_Intron	NM_198688.2	NP_941961.2	P60371	KR106_HUMAN	keratin associated protein 10-6	48	29 X 5 AA repeats of C-C-X(3).					keratin filament				endometrium(4)|haematopoietic_and_lymphoid_tissue(1)|kidney(3)|large_intestine(3)|lung(6)|prostate(3)|skin(1)|stomach(1)|urinary_tract(1)	23						GGCAGGGGGCCGGGGCGCAGCA	0.688													7	287	---	---	---	---					
CCT8L2	150160	broad.mit.edu	37	22	17071787	17071787	+	Frame_Shift_Del	DEL	T	T	-			TCGA-HZ-7924-01A-11D-2154-08	TCGA-HZ-7924-10A-01D-2154-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c4c1f4b1-d515-4a44-a975-38fa092bca24	cbb96d11-05d7-46a3-ace3-0b6010d95fb2	g.chr22:17071787delT	ENST00000359963.3	-	1	1913	c.1654delA	c.(1654-1656)tcfs	p.I552fs		NM_014406.4	NP_055221.1	Q96SF2	TCPQM_HUMAN	chaperonin containing TCP1, subunit 8 (theta)-like 2	552					cellular protein metabolic process	cytoplasm	anion channel activity|ATP binding|calcium-activated potassium channel activity			breast(3)|endometrium(7)|kidney(1)|large_intestine(8)|liver(2)|lung(37)|ovary(3)|prostate(3)|skin(2)|stomach(1)	67	all_hematologic(4;0.00567)|Acute lymphoblastic leukemia(84;0.0977)	all_epithelial(15;0.0157)|Lung NSC(13;0.147)|all_lung(157;0.175)				AATCCAAGGATTTTTTTTGTT	0.408													7	617	---	---	---	---					
TPTEP1	0	broad.mit.edu	37	22	17127506	17127507	+	RNA	INS	-	-	A			TCGA-HZ-7924-01A-11D-2154-08	TCGA-HZ-7924-10A-01D-2154-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c4c1f4b1-d515-4a44-a975-38fa092bca24	cbb96d11-05d7-46a3-ace3-0b6010d95fb2	g.chr22:17127506_17127507insA	ENST00000426585.1	+	0	442																											AGGGCCTAGAGAAAAAAAAAAT	0.421													11	439	---	---	---	---					
MED15	51586	broad.mit.edu	37	22	20918817	20918819	+	In_Frame_Del	DEL	CAG	CAG	-			TCGA-HZ-7924-01A-11D-2154-08	TCGA-HZ-7924-10A-01D-2154-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c4c1f4b1-d515-4a44-a975-38fa092bca24	cbb96d11-05d7-46a3-ace3-0b6010d95fb2	g.chr22:20918817_20918819delCAG	ENST00000263205.7	+	6	601_603	c.532_534delCAG	c.(532-534)del	p.Q188del	MED15_ENST00000541476.1_In_Frame_Del_p.Q162del|MED15_ENST00000292733.7_In_Frame_Del_p.Q188del|MED15_ENST00000406969.1_In_Frame_Del_p.Q162del|MED15_ENST00000382974.2_In_Frame_Del_p.Q117del|MED15_ENST00000542773.1_5'UTR|MED15_ENST00000425759.2_In_Frame_Del_p.Q77del	NM_001003891.1	NP_001003891.1	Q96RN5	MED15_HUMAN	mediator complex subunit 15	188	Poly-Gln.				regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	Golgi apparatus|mediator complex	protein binding			central_nervous_system(1)|endometrium(5)|kidney(3)|large_intestine(2)|lung(8)|ovary(1)|prostate(1)|skin(3)|urinary_tract(1)	25	all_cancers(11;2.07e-24)|Melanoma(16;0.000465)|Ovarian(15;0.00167)|Colorectal(54;0.0221)|all_neural(72;0.142)	Lung SC(17;0.0262)	LUSC - Lung squamous cell carcinoma(15;0.00102)|Lung(15;0.0173)|Epithelial(17;0.209)			ggcggcgctacagcagcagcagc	0.626											OREG0026319	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	7	124	---	---	---	---					
LL22NC03-80A10.6	0	broad.mit.edu	37	22	22661172	22661173	+	RNA	INS	-	-	C	rs7410785		TCGA-HZ-7924-01A-11D-2154-08	TCGA-HZ-7924-10A-01D-2154-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c4c1f4b1-d515-4a44-a975-38fa092bca24	cbb96d11-05d7-46a3-ace3-0b6010d95fb2	g.chr22:22661172_22661173insC	ENST00000426066.1	+	0	264_265					NR_027293.1																						CATACAGGTTTTCCCCCCCCAC	0.411													8	252	---	---	---	---					
C22orf43	51233	broad.mit.edu	37	22	23959767	23959769	+	In_Frame_Del	DEL	CAT	CAT	-			TCGA-HZ-7924-01A-11D-2154-08	TCGA-HZ-7924-10A-01D-2154-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c4c1f4b1-d515-4a44-a975-38fa092bca24	cbb96d11-05d7-46a3-ace3-0b6010d95fb2	g.chr22:23959767_23959769delCAT	ENST00000317749.5	-	7	809_811	c.512_514delATG	c.(511-516)gcc>g	p.DA171del		NM_016449.3	NP_057533.2	Q6PGQ1	CV043_HUMAN	chromosome 22 open reading frame 43	171	Asp-rich.									endometrium(1)|large_intestine(3)|lung(5)|pancreas(1)|skin(1)	11						CTTACCTGGGcatcatcatcatc	0.433													9	378	---	---	---	---					
TRIOBP	11078	broad.mit.edu	37	22	38120029	38120031	+	In_Frame_Del	DEL	CCT	CCT	-			TCGA-HZ-7924-01A-11D-2154-08	TCGA-HZ-7924-10A-01D-2154-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c4c1f4b1-d515-4a44-a975-38fa092bca24	cbb96d11-05d7-46a3-ace3-0b6010d95fb2	g.chr22:38120029_38120031delCCT	ENST00000406386.3	+	7	1721_1723	c.1466_1468delCCT	c.(1465-1470)gcc>g	p.AS489del	RP1-37E16.12_ENST00000455236.1_RNA	NM_001039141.2	NP_001034230.1	Q9H2D6	TARA_HUMAN	TRIO and F-actin binding protein	489					actin modification|barbed-end actin filament capping	actin cytoskeleton|cytoplasm|nucleus	actin binding|GTP-Rho binding|myosin II binding|protein binding|ubiquitin protein ligase binding			central_nervous_system(1)|endometrium(2)|kidney(1)|large_intestine(1)|lung(3)|ovary(1)|prostate(1)|skin(1)|upper_aerodigestive_tract(1)	12	Melanoma(58;0.0574)					AATCCCAGAGCCTCCTCTCCCAG	0.601													14	838	---	---	---	---					
RANGAP1	5905	broad.mit.edu	37	22	41650469	41650471	+	In_Frame_Del	DEL	TCC	TCC	-			TCGA-HZ-7924-01A-11D-2154-08	TCGA-HZ-7924-10A-01D-2154-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c4c1f4b1-d515-4a44-a975-38fa092bca24	cbb96d11-05d7-46a3-ace3-0b6010d95fb2	g.chr22:41650469_41650471delTCC	ENST00000455915.2	-	10	2570_2572	c.1101_1103delGGA	c.(1099-1104)gaa>ga	p.EE367del	RANGAP1_ENST00000407260.4_In_Frame_Del_p.EE312del|RANGAP1_ENST00000356244.3_In_Frame_Del_p.EE367del|RANGAP1_ENST00000405486.1_In_Frame_Del_p.EE367del			P46060	RAGP1_HUMAN	Ran GTPase activating protein 1	367	Asp/Glu-rich (highly acidic).				mitotic prometaphase|signal transduction	condensed chromosome kinetochore|cytosol|nuclear membrane|nuclear pore|soluble fraction|spindle pole	protein binding|Ran GTPase activator activity			breast(1)|central_nervous_system(1)|cervix(1)|endometrium(2)|kidney(2)|large_intestine(3)|lung(7)|upper_aerodigestive_tract(1)|urinary_tract(1)	19						ctcttctccttcctcctcctcct	0.562													9	689	---	---	---	---					
BIK	638	broad.mit.edu	37	22	43525245	43525247	+	In_Frame_Del	DEL	GCT	GCT	-			TCGA-HZ-7924-01A-11D-2154-08	TCGA-HZ-7924-10A-01D-2154-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c4c1f4b1-d515-4a44-a975-38fa092bca24	cbb96d11-05d7-46a3-ace3-0b6010d95fb2	g.chr22:43525245_43525247delGCT	ENST00000216115.2	+	5	480_482	c.417_419delGCT	c.(415-420)gcg>gc	p.AL139del		NM_001197.4	NP_001188.1	Q13323	BIK_HUMAN	BCL2-interacting killer (apoptosis-inducing)	139	Leucine-zipper (Potential).				apoptosis|induction of apoptosis|positive regulation of protein homooligomerization|positive regulation of release of cytochrome c from mitochondria	endomembrane system|integral to membrane				breast(1)|cervix(1)|endometrium(1)|large_intestine(1)|urinary_tract(1)	5		Ovarian(80;0.0694)				tgctgctggcgctgctgctgctg	0.724													12	398	---	---	---	---					
PLXNB2	23654	broad.mit.edu	37	22	50722162	50722163	+	Frame_Shift_Ins	INS	-	-	C			TCGA-HZ-7924-01A-11D-2154-08	TCGA-HZ-7924-10A-01D-2154-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c4c1f4b1-d515-4a44-a975-38fa092bca24	cbb96d11-05d7-46a3-ace3-0b6010d95fb2	g.chr22:50722162_50722163insC	ENST00000449103.1	-	15	2578_2579	c.2438_2439insG	c.(2437-2439)gccfs	p.A813fs	PLXNB2_ENST00000359337.4_Frame_Shift_Ins_p.A813fs|PLXNB2_ENST00000496720.1_5'UTR			O15031	PLXB2_HUMAN	plexin B2	813	IPT/TIG 1.				regulation of small GTPase mediated signal transduction	integral to membrane|intracellular	GTPase activator activity|protein binding|receptor activity			breast(2)|central_nervous_system(4)|cervix(2)|endometrium(11)|kidney(4)|large_intestine(3)|liver(1)|lung(20)|ovary(5)|prostate(6)|skin(3)|upper_aerodigestive_tract(3)|urinary_tract(2)	66		all_cancers(38;5.78e-13)|all_epithelial(38;1.71e-11)|all_lung(38;3.89e-05)|Breast(42;0.000523)|Lung NSC(38;0.000992)|Ovarian(80;0.0221)|Hepatocellular(38;0.0691)|Lung SC(80;0.113)		BRCA - Breast invasive adenocarcinoma(115;0.205)|LUAD - Lung adenocarcinoma(64;0.247)		CACCCAGGGGGCCCGTCTCAGG	0.658													7	222	---	---	---	---					
GUCY2F	2986	broad.mit.edu	37	X	108619355	108619355	+	Frame_Shift_Del	DEL	T	T	-			TCGA-HZ-7924-01A-11D-2154-08	TCGA-HZ-7924-10A-01D-2154-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c4c1f4b1-d515-4a44-a975-38fa092bca24	cbb96d11-05d7-46a3-ace3-0b6010d95fb2	g.chrX:108619355delT	ENST00000218006.2	-	18	3483	c.3192delA	c.(3190-3192)aafs	p.K1064fs		NM_001522.2	NP_001513.2	P51841	GUC2F_HUMAN	guanylate cyclase 2F, retinal	1064					intracellular signal transduction|receptor guanylyl cyclase signaling pathway|visual perception	integral to plasma membrane|nuclear outer membrane	ATP binding|GTP binding|guanylate cyclase activity|protein kinase activity|receptor activity			breast(3)|central_nervous_system(2)|endometrium(5)|kidney(6)|large_intestine(14)|lung(33)|prostate(3)|skin(1)	67						TCATGAAGCCTTTTTTCCCAA	0.418													10	1352	---	---	---	---					
CUL4B	8450	broad.mit.edu	37	X	119694117	119694119	+	In_Frame_Del	DEL	GAG	GAG	-			TCGA-HZ-7924-01A-11D-2154-08	TCGA-HZ-7924-10A-01D-2154-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c4c1f4b1-d515-4a44-a975-38fa092bca24	cbb96d11-05d7-46a3-ace3-0b6010d95fb2	g.chrX:119694117_119694119delGAG	ENST00000371322.5	-	1	436_438	c.375_377delCTC	c.(373-378)tca>tc	p.SS127del	CUL4B_ENST00000336592.6_In_Frame_Del_p.SS132del|CUL4B_ENST00000404115.3_In_Frame_Del_p.SS145del	NM_001079872.1	NP_001073341.1	Q13620	CUL4B_HUMAN	cullin 4B	145	Ser-rich.				cell cycle|DNA repair|ubiquitin-dependent protein catabolic process	Cul4B-RING ubiquitin ligase complex|nucleus	protein binding|ubiquitin protein ligase binding			NS(1)|breast(2)|central_nervous_system(1)|cervix(1)|endometrium(5)|kidney(1)|large_intestine(7)|lung(14)|pancreas(1)|skin(1)|upper_aerodigestive_tract(1)|urinary_tract(1)	36						TGGTGAAGATgaggaggaggagg	0.488													9	439	---	---	---	---					
HTATSF1	27336	broad.mit.edu	37	X	135585048	135585050	+	In_Frame_Del	DEL	AAG	AAG	-			TCGA-HZ-7924-01A-11D-2154-08	TCGA-HZ-7924-10A-01D-2154-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c4c1f4b1-d515-4a44-a975-38fa092bca24	cbb96d11-05d7-46a3-ace3-0b6010d95fb2	g.chrX:135585048_135585050delAAG	ENST00000535601.1	+	6	1104_1106	c.682_684delAAG	c.(682-684)del	p.K232del	HTATSF1_ENST00000218364.4_In_Frame_Del_p.K232del	NM_001163280.1	NP_001156752.1	O43719	HTSF1_HUMAN	HIV-1 Tat specific factor 1	232	Poly-Lys.				regulation of transcription elongation, DNA-dependent|regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent|viral genome replication	nucleus	nucleotide binding|protein binding|RNA binding			NS(1)|biliary_tract(1)|breast(2)|endometrium(1)|kidney(2)|large_intestine(5)|lung(14)|ovary(3)|prostate(1)	30	Acute lymphoblastic leukemia(192;0.000127)					TGATGCCTCAAAGAAGAAGAAGA	0.335													7	654	---	---	---	---					
MAGEC1	9947	broad.mit.edu	37	X	140996449	140996449	+	Frame_Shift_Del	DEL	T	T	-			TCGA-HZ-7924-01A-11D-2154-08	TCGA-HZ-7924-10A-01D-2154-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c4c1f4b1-d515-4a44-a975-38fa092bca24	cbb96d11-05d7-46a3-ace3-0b6010d95fb2	g.chrX:140996449delT	ENST00000285879.4	+	4	3545	c.3259delT	c.(3259-3261)ttfs	p.F1087fs	MAGEC1_ENST00000406005.2_Frame_Shift_Del_p.F154fs	NM_005462.4	NP_005453.2	O60732	MAGC1_HUMAN	melanoma antigen family C, 1	1087	MAGE.						protein binding			breast(3)|central_nervous_system(1)|cervix(1)|endometrium(7)|haematopoietic_and_lymphoid_tissue(2)|kidney(8)|large_intestine(22)|lung(60)|ovary(1)|pancreas(1)|prostate(1)|skin(7)|stomach(5)|upper_aerodigestive_tract(7)|urinary_tract(1)	127	Acute lymphoblastic leukemia(192;6.56e-05)					AGTAGTAGAGTTTTTGGCCAT	0.468										HNSCC(15;0.026)			7	1277	---	---	---	---					
PASD1	139135	broad.mit.edu	37	X	150817142	150817144	+	In_Frame_Del	DEL	GCT	GCT	-			TCGA-HZ-7924-01A-11D-2154-08	TCGA-HZ-7924-10A-01D-2154-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c4c1f4b1-d515-4a44-a975-38fa092bca24	cbb96d11-05d7-46a3-ace3-0b6010d95fb2	g.chrX:150817142_150817144delGCT	ENST00000370357.4	+	9	930_932	c.685_687delGCT	c.(685-687)del	p.A236del		NM_173493.2	NP_775764.2	Q8IV76	PASD1_HUMAN	PAS domain containing 1	236	Poly-Ala.					nucleus	signal transducer activity	p.A229A(2)		breast(2)|cervix(1)|endometrium(5)|kidney(2)|large_intestine(3)|liver(1)|lung(25)|ovary(3)|pancreas(1)|prostate(1)|skin(2)|stomach(1)|upper_aerodigestive_tract(1)	48	Acute lymphoblastic leukemia(192;6.56e-05)					CGTTGAACCCgctgctgctgctg	0.433													12	784	---	---	---	---					
ZNF185	7739	broad.mit.edu	37	X	152087570	152087572	+	In_Frame_Del	DEL	GAG	GAG	-			TCGA-HZ-7924-01A-11D-2154-08	TCGA-HZ-7924-10A-01D-2154-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c4c1f4b1-d515-4a44-a975-38fa092bca24	cbb96d11-05d7-46a3-ace3-0b6010d95fb2	g.chrX:152087570_152087572delGAG	ENST00000535861.1	+	7	523_525	c.475_477delGAG	c.(475-477)del	p.E165del	ZNF185_ENST00000370268.4_In_Frame_Del_p.E165del|ZNF185_ENST00000370270.1_In_Frame_Del_p.E25del|ZNF185_ENST00000539731.1_In_Frame_Del_p.E165del|ZNF185_ENST00000318529.8_In_Frame_Del_p.E30del|ZNF185_ENST00000318504.7_In_Frame_Del_p.E165del|ZNF185_ENST00000324823.6_In_Frame_Del_p.E30del|ZNF185_ENST00000449285.2_In_Frame_Del_p.E165del	NM_001178106.1	NP_001171577.1	O15231	ZN185_HUMAN	zinc finger protein 185 (LIM domain)	165	Poly-Glu.					cytoplasm|cytoskeleton|focal adhesion	zinc ion binding			NS(1)|endometrium(1)|kidney(2)|large_intestine(2)|lung(3)|ovary(3)	12	Acute lymphoblastic leukemia(192;6.56e-05)					AGGGGACACCgaggaggaggagg	0.596													7	158	---	---	---	---					
