Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	isArtifactMode	oxoGCut	pox	pox_cutoff	qox	t_alt_count	t_ref_count	validation_alt_allele	validation_tumor_sample							
DNAJC11	55735	broad.mit.edu	37	1	6704689	6704689	+	Silent	SNP	C	C	T			TCGA-DK-A2I1-01A-11D-A17V-08	TCGA-DK-A2I1-10A-01D-A17V-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f350676a-e308-42fe-8297-9d18ba7027b1	bba7b385-f707-4654-ba9e-cd3bbebf4859	g.chr1:6704689C>T	uc001aof.2	-	10	1132	c.1026G>A	c.(1024-1026)AAG>AAA	p.K342K	DNAJC11_uc010nzt.1_Intron|DNAJC11_uc001aog.2_Silent_p.K342K|DNAJC11_uc010nzu.1_Silent_p.K252K	NM_018198	NP_060668	Q9NVH1	DJC11_HUMAN	DnaJ (Hsp40) homolog, subfamily C, member 11	342					protein folding		heat shock protein binding|unfolded protein binding			ovary(1)|skin(1)	2	Ovarian(185;0.0265)|all_lung(157;0.154)	all_cancers(23;1.97e-27)|all_epithelial(116;1.76e-17)|all_lung(118;2.27e-05)|Lung NSC(185;9.97e-05)|Renal(390;0.00188)|Breast(487;0.00289)|Colorectal(325;0.00342)|Hepatocellular(190;0.0218)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.156)		Colorectal(212;2.34e-07)|COAD - Colon adenocarcinoma(227;2.05e-05)|Kidney(185;7.67e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000639)|KIRC - Kidney renal clear cell carcinoma(229;0.00128)|STAD - Stomach adenocarcinoma(132;0.00179)|READ - Rectum adenocarcinoma(331;0.0649)		GCCTGGAGATCTTCCTCTCAG	0.552		NaN											0	0	0	0.000491102	0	30	52									
MTHFR	4524	broad.mit.edu	37	1	11854538	11854538	+	Silent	SNP	C	C	G			TCGA-DK-A2I1-01A-11D-A17V-08	TCGA-DK-A2I1-10A-01D-A17V-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f350676a-e308-42fe-8297-9d18ba7027b1	bba7b385-f707-4654-ba9e-cd3bbebf4859	g.chr1:11854538C>G	uc001atc.1	-	8	1408	c.1224G>C	c.(1222-1224)CTG>CTC	p.L408L	MTHFR_uc001atb.1_Silent_p.L431L	NM_005957	NP_005948	P42898	MTHR_HUMAN	5,10-methylenetetrahydrofolate reductase	408					blood circulation|folic acid metabolic process	cytosol	methylenetetrahydrofolate reductase (NADPH) activity|protein binding				0	Ovarian(185;0.249)	Lung NSC(185;8.69e-05)|all_lung(284;9.87e-05)|Renal(390;0.000147)|Breast(348;0.00093)|Colorectal(325;0.00205)|Hepatocellular(190;0.00826)|Ovarian(437;0.00965)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;5.66e-06)|COAD - Colon adenocarcinoma(227;0.000261)|BRCA - Breast invasive adenocarcinoma(304;0.000304)|Kidney(185;0.000777)|KIRC - Kidney renal clear cell carcinoma(229;0.00261)|STAD - Stomach adenocarcinoma(313;0.0073)|READ - Rectum adenocarcinoma(331;0.0649)	Benazepril(DB00542)|Cyanocobalamin(DB00115)|Folic Acid(DB00158)|L-Methionine(DB00134)|Menadione(DB00170)|Methotrexate(DB00563)|Pyridoxal Phosphate(DB00114)|Pyridoxine(DB00165)|Raltitrexed(DB00293)|Riboflavin(DB00140)|S-Adenosylmethionine(DB00118)|Tetrahydrofolic acid(DB00116)	ACTTGCTCTTCAGGTAGAAGA	0.562		NaN											0	0	0	0.000229342	0	18	106									
MACF1	23499	broad.mit.edu	37	1	39776610	39776610	+	Missense_Mutation	SNP	G	G	A			TCGA-DK-A2I1-01A-11D-A17V-08	TCGA-DK-A2I1-10A-01D-A17V-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f350676a-e308-42fe-8297-9d18ba7027b1	bba7b385-f707-4654-ba9e-cd3bbebf4859	g.chr1:39776610G>A	uc010ois.1	+	27	3428	c.3223G>A	c.(3223-3225)GCC>ACC	p.A1075T	MACF1_uc001cda.1_Missense_Mutation_p.A983T|MACF1_uc001cdc.1_Missense_Mutation_p.A162T|MACF1_uc009vvq.1_Missense_Mutation_p.A132T|MACF1_uc001cdb.1_Missense_Mutation_p.A162T	NM_012090	NP_036222	Q9UPN3	MACF1_HUMAN	microfilament and actin filament cross-linker	1075					cell cycle arrest|Golgi to plasma membrane protein transport|positive regulation of Wnt receptor signaling pathway|regulation of epithelial cell migration|regulation of focal adhesion assembly|regulation of microtubule-based process|Wnt receptor signaling pathway|wound healing	Golgi apparatus|microtubule|ruffle membrane	actin filament binding|ATPase activity|calcium ion binding|microtubule binding			ovary(8)|breast(3)|central_nervous_system(3)|skin(2)	16	Lung NSC(20;5.57e-06)|Ovarian(52;0.00769)|Acute lymphoblastic leukemia(166;0.074)	Myeloproliferative disorder(586;0.0255)	OV - Ovarian serous cystadenocarcinoma(33;7.78e-19)|Epithelial(16;1.73e-17)|all cancers(16;2.49e-16)|LUSC - Lung squamous cell carcinoma(16;0.00146)|Lung(16;0.00204)			TCAGTCTCTAGCCAGCTCTAG	0.502		NaN											0	0	0	0.000147903	0	42	63									
LEPRE1	64175	broad.mit.edu	37	1	43228147	43228147	+	Splice_Site	SNP	C	C	G			TCGA-DK-A2I1-01A-11D-A17V-08	TCGA-DK-A2I1-10A-01D-A17V-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f350676a-e308-42fe-8297-9d18ba7027b1	bba7b385-f707-4654-ba9e-cd3bbebf4859	g.chr1:43228147C>G	uc001chv.2	-	2	579	c.466_splice	c.e2-1	p.I156_splice	LEPRE1_uc001chw.2_Splice_Site_p.I156_splice|LEPRE1_uc001chx.3_Splice_Site_p.I156_splice|LEPRE1_uc001chy.3_Intron	NM_022356	NP_071751	Q32P28	P3H1_HUMAN	leprecan 1 isoform 1						negative regulation of cell proliferation	endoplasmic reticulum|proteinaceous extracellular matrix	iron ion binding|L-ascorbic acid binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|procollagen-proline 3-dioxygenase activity			ovary(3)|lung(1)	4	Ovarian(52;0.00744)|all_hematologic(146;0.0977)|Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0505)			L-Proline(DB00172)|Succinic acid(DB00139)|Vitamin C(DB00126)	ACTTGTTGATCTAAGAATGAA	0.463		NaN											0	0	0	0.000147903	0	48	95									
KIAA0467	23334	broad.mit.edu	37	1	43902989	43902989	+	Missense_Mutation	SNP	C	C	G			TCGA-DK-A2I1-01A-11D-A17V-08	TCGA-DK-A2I1-10A-01D-A17V-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f350676a-e308-42fe-8297-9d18ba7027b1	bba7b385-f707-4654-ba9e-cd3bbebf4859	g.chr1:43902989C>G	uc001cjk.1	+	28	3947	c.3485C>G	c.(3484-3486)TCT>TGT	p.S1162C		NM_015284	NP_056099	Q5T011	SZT2_HUMAN	hypothetical protein LOC23334	2061						peroxisome					0	all_hematologic(146;0.0958)|Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0505)				ATGGGGGTCTCTCGGGGTATG	0.552		NaN											0	0	0	0.000295444	0	20	90									
STIL	6491	broad.mit.edu	37	1	47728683	47728683	+	Silent	SNP	C	C	A			TCGA-DK-A2I1-01A-11D-A17V-08	TCGA-DK-A2I1-10A-01D-A17V-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f350676a-e308-42fe-8297-9d18ba7027b1	bba7b385-f707-4654-ba9e-cd3bbebf4859	g.chr1:47728683C>A	uc001crc.1	-	15	2873	c.2718G>T	c.(2716-2718)GGG>GGT	p.G906G	TAL1_uc001crb.1_Intron|STIL_uc010omn.1_Silent_p.G860G|STIL_uc010omo.1_Silent_p.G889G|STIL_uc001crd.1_Silent_p.G907G|STIL_uc001cre.1_Silent_p.G906G|STIL_uc001crf.1_Silent_p.G519G|STIL_uc001crg.1_Silent_p.G842G	NM_003035	NP_003026	Q15468	STIL_HUMAN	SCL/TAL1 interrupting locus isoform 2	906					cell proliferation|multicellular organismal development	centrosome|cytosol				lung(2)|skin(1)	3		Acute lymphoblastic leukemia(5;0.00116)|all_hematologic(5;0.00444)				TACTGGCACCCCCTGTTGGTC	0.433		NaN											1	0	0.000274275	0.000274275	0.00417306	8	144									
BTF3L4	91408	broad.mit.edu	37	1	52530608	52530608	+	Missense_Mutation	SNP	G	G	C			TCGA-DK-A2I1-01A-11D-A17V-08	TCGA-DK-A2I1-10A-01D-A17V-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f350676a-e308-42fe-8297-9d18ba7027b1	bba7b385-f707-4654-ba9e-cd3bbebf4859	g.chr1:52530608G>C	uc001ctk.2	+	3	374	c.166G>C	c.(166-168)GAG>CAG	p.E56Q	BTF3L4_uc001ctl.2_5'UTR|BTF3L4_uc010onh.1_RNA|BTF3L4_uc001ctm.2_Missense_Mutation_p.E56Q	NM_152265	NP_689478	Q96K17	BT3L4_HUMAN	basic transcription factor 3-like 4 isoform 1	56	NAC-A/B.									large_intestine(1)	1						TGGTATTGAAGAGGTATGATC	0.358		NaN											0	0	0	0.000175454	0	22	52									
GPR88	54112	broad.mit.edu	37	1	101005559	101005559	+	Missense_Mutation	SNP	C	C	A			TCGA-DK-A2I1-01A-11D-A17V-08	TCGA-DK-A2I1-10A-01D-A17V-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f350676a-e308-42fe-8297-9d18ba7027b1	bba7b385-f707-4654-ba9e-cd3bbebf4859	g.chr1:101005559C>A	uc001dth.2	+	2	1441	c.1037C>A	c.(1036-1038)TCC>TAC	p.S346Y		NM_022049	NP_071332	Q9GZN0	GPR88_HUMAN	G-protein coupled receptor 88	346	Cytoplasmic (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity				0		all_epithelial(167;1.19e-05)|all_lung(203;0.00159)|Lung NSC(277;0.00171)		Epithelial(280;0.0372)|all cancers(265;0.0558)|COAD - Colon adenocarcinoma(174;0.141)|Colorectal(144;0.156)|Lung(183;0.189)		TTCCGCCGCTCCGTGCGCTCA	0.741		NaN											1	0	0.00024832	0.00024832	0.00378859	3	0									
CELSR2	1952	broad.mit.edu	37	1	109793966	109793966	+	Missense_Mutation	SNP	C	C	T			TCGA-DK-A2I1-01A-11D-A17V-08	TCGA-DK-A2I1-10A-01D-A17V-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f350676a-e308-42fe-8297-9d18ba7027b1	bba7b385-f707-4654-ba9e-cd3bbebf4859	g.chr1:109793966C>T	uc001dxa.3	+	1	1326	c.1265C>T	c.(1264-1266)ACA>ATA	p.T422I		NM_001408	NP_001399	Q9HCU4	CELR2_HUMAN	cadherin EGF LAG seven-pass G-type receptor 2	422	Cadherin 3.|Extracellular (Potential).				dendrite morphogenesis|homophilic cell adhesion|neural plate anterior/posterior regionalization|neuropeptide signaling pathway|regulation of cell-cell adhesion|regulation of transcription, DNA-dependent|Wnt receptor signaling pathway	cytoplasm|integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity|protein binding			ovary(4)|lung(3)|skin(1)	8		all_epithelial(167;0.000114)|all_lung(203;0.000321)|Lung NSC(277;0.000626)|Breast(1374;0.244)		Colorectal(144;0.0296)|Lung(183;0.067)|COAD - Colon adenocarcinoma(174;0.114)|Epithelial(280;0.193)|all cancers(265;0.219)		CTCCGAGTCACAGCCTCGGAT	0.557		NaN											0	0	0	0.000175454	0	19	60									
CHIA	27159	broad.mit.edu	37	1	111853046	111853046	+	Translation_Start_Site	SNP	C	C	G			TCGA-DK-A2I1-01A-11D-A17V-08	TCGA-DK-A2I1-10A-01D-A17V-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f350676a-e308-42fe-8297-9d18ba7027b1	bba7b385-f707-4654-ba9e-cd3bbebf4859	g.chr1:111853046C>G	uc001eas.2	+	2	60	c.-43C>G	c.(-45--41)ATCAG>ATGAG		CHIA_uc001ear.2_Intron|CHIA_uc001eaq.2_Translation_Start_Site|CHIA_uc009wgc.2_Intron|CHIA_uc001eat.2_Intron|CHIA_uc001eav.2_Translation_Start_Site|CHIA_uc001eau.2_Translation_Start_Site|CHIA_uc009wgd.2_Translation_Start_Site	NM_201653	NP_970615	Q9BZP6	CHIA_HUMAN	acidic chitinase isoform c						apoptosis|cell wall chitin metabolic process|chitin catabolic process|digestion|immune response|positive regulation of chemokine secretion|production of molecular mediator involved in inflammatory response|response to acid|response to fungus	cytoplasm|extracellular space	cation binding|chitin binding|chitinase activity|kinase binding|lysozyme activity|sugar binding			ovary(1)	1		all_cancers(81;3.23e-05)|all_epithelial(167;1.2e-05)|all_lung(203;0.000154)|Lung NSC(277;0.000304)		Colorectal(144;0.0115)|Lung(183;0.0292)|COAD - Colon adenocarcinoma(174;0.0314)|all cancers(265;0.0477)|Epithelial(280;0.0918)|LUSC - Lung squamous cell carcinoma(189;0.154)		ACCACAGAATCAGAACATATA	0.408		NaN											0	0	0	0.000219431	0	15	33									
NBPF14	25832	broad.mit.edu	37	1	148004641	148004641	+	Missense_Mutation	SNP	G	G	C			TCGA-DK-A2I1-01A-11D-A17V-08	TCGA-DK-A2I1-10A-01D-A17V-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f350676a-e308-42fe-8297-9d18ba7027b1	bba7b385-f707-4654-ba9e-cd3bbebf4859	g.chr1:148004641G>C	uc001eqq.2	-	22	2690	c.2673C>G	c.(2671-2673)ATC>ATG	p.I891M	LOC200030_uc010ozz.1_Intron|LOC200030_uc001eqe.2_Intron|LOC200030_uc001eqf.2_Intron|LOC200030_uc001eqg.2_Intron|FLJ39739_uc001eqo.1_Intron|NBPF14_uc010pab.1_Missense_Mutation_p.I239M|NBPF14_uc010pac.1_Missense_Mutation_p.I464M	NM_015383	NP_056198	Q5TI25	NBPFE_HUMAN	hypothetical protein LOC25832	891	NBPF 10.					cytoplasm				ovary(1)	1	all_hematologic(923;0.032)					GGGCGAAGCTGATATGCTCTT	0.438		NaN											0	0	0	0.000147903	0	158	192									
MTMR11	10903	broad.mit.edu	37	1	149906158	149906158	+	Silent	SNP	C	C	T			TCGA-DK-A2I1-01A-11D-A17V-08	TCGA-DK-A2I1-10A-01D-A17V-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f350676a-e308-42fe-8297-9d18ba7027b1	bba7b385-f707-4654-ba9e-cd3bbebf4859	g.chr1:149906158C>T	uc001etl.3	-	7	860	c.609G>A	c.(607-609)GAG>GAA	p.E203E	MTMR11_uc001etm.1_Silent_p.E131E|MTMR11_uc010pbm.1_Silent_p.E175E|MTMR11_uc010pbn.1_Silent_p.E45E	NM_001145862	NP_001139334	A4FU01	MTMRB_HUMAN	myotubularin related protein 11 isoform a	203	Myotubularin phosphatase.						phosphatase activity			central_nervous_system(1)	1	Breast(34;0.0009)|Ovarian(49;0.0377)|all_hematologic(923;0.0597)|Hepatocellular(266;0.161)|Colorectal(459;0.171)		LUSC - Lung squamous cell carcinoma(543;0.221)|STAD - Stomach adenocarcinoma(528;0.247)			TCCGCTCAGTCTCCCAGTCTT	0.572		NaN											0	0	0	0.000409698	0	32	49									
SELENBP1	8991	broad.mit.edu	37	1	151341538	151341538	+	Missense_Mutation	SNP	G	G	A			TCGA-DK-A2I1-01A-11D-A17V-08	TCGA-DK-A2I1-10A-01D-A17V-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f350676a-e308-42fe-8297-9d18ba7027b1	bba7b385-f707-4654-ba9e-cd3bbebf4859	g.chr1:151341538G>A	uc001exx.2	-	4	349	c.302C>T	c.(301-303)TCC>TTC	p.S101F	SELENBP1_uc010pcy.1_Missense_Mutation_p.S143F|SELENBP1_uc001exy.2_5'UTR|SELENBP1_uc001exz.2_5'UTR|SELENBP1_uc010pcz.1_Intron|SELENBP1_uc009wms.2_5'UTR|SELENBP1_uc009wmt.2_5'UTR|SELENBP1_uc001eya.2_Missense_Mutation_p.S37F|SELENBP1_uc009wmu.2_5'UTR	NM_003944	NP_003935	Q13228	SBP1_HUMAN	selenium binding protein 1	101					protein transport	cytosol|membrane|nucleolus	protein binding|selenium binding				0	Lung SC(34;0.00471)|Ovarian(49;0.00871)|Hepatocellular(266;0.0997)|all_hematologic(923;0.127)|Melanoma(130;0.185)		UCEC - Uterine corpus endometrioid carcinoma (35;0.112)|LUSC - Lung squamous cell carcinoma(543;0.181)			GATGCGAGAGGAGATGAGACT	0.592		NaN											0	0	0	0.000319135	0	40	52									
SELENBP1	8991	broad.mit.edu	37	1	151341620	151341620	+	Missense_Mutation	SNP	G	G	C			TCGA-DK-A2I1-01A-11D-A17V-08	TCGA-DK-A2I1-10A-01D-A17V-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f350676a-e308-42fe-8297-9d18ba7027b1	bba7b385-f707-4654-ba9e-cd3bbebf4859	g.chr1:151341620G>C	uc001exx.2	-	4	267	c.220C>G	c.(220-222)CAC>GAC	p.H74D	SELENBP1_uc010pcy.1_Missense_Mutation_p.H116D|SELENBP1_uc001exy.2_Translation_Start_Site|SELENBP1_uc001exz.2_Translation_Start_Site|SELENBP1_uc010pcz.1_Intron|SELENBP1_uc009wms.2_Translation_Start_Site|SELENBP1_uc009wmt.2_Translation_Start_Site|SELENBP1_uc001eya.2_Missense_Mutation_p.H10D|SELENBP1_uc009wmu.2_Translation_Start_Site	NM_003944	NP_003935	Q13228	SBP1_HUMAN	selenium binding protein 1	74					protein transport	cytosol|membrane|nucleolus	protein binding|selenium binding				0	Lung SC(34;0.00471)|Ovarian(49;0.00871)|Hepatocellular(266;0.0997)|all_hematologic(923;0.127)|Melanoma(130;0.185)		UCEC - Uterine corpus endometrioid carcinoma (35;0.112)|LUSC - Lung squamous cell carcinoma(543;0.181)			CATCCTGAGTGATGCAGCTCG	0.552		NaN											0	0	0	0.00058488	0	32	74									
SPRR1A	6698	broad.mit.edu	37	1	152957821	152957821	+	Missense_Mutation	SNP	G	G	A			TCGA-DK-A2I1-01A-11D-A17V-08	TCGA-DK-A2I1-10A-01D-A17V-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f350676a-e308-42fe-8297-9d18ba7027b1	bba7b385-f707-4654-ba9e-cd3bbebf4859	g.chr1:152957821G>A	uc009wnu.1	+	2	193	c.115G>A	c.(115-117)GAG>AAG	p.E39K	SPRR1A_uc001faw.2_Missense_Mutation_p.E39K	NM_005987	NP_005978	P35321	SPR1A_HUMAN	small proline-rich protein 1A	39	2.|6 X 8 AA approximate tandem repeats.				keratinization|peptide cross-linking	cornified envelope|cytoplasm	protein binding, bridging|structural molecule activity				0	Lung NSC(65;1.46e-29)|Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.242)		LUSC - Lung squamous cell carcinoma(543;0.171)			CAAAACCAAGGAGCCCTGCCA	0.652		NaN											0	0	0	0.000227799	0	30	125									
ARHGEF2	9181	broad.mit.edu	37	1	155931990	155931990	+	Silent	SNP	G	G	A			TCGA-DK-A2I1-01A-11D-A17V-08	TCGA-DK-A2I1-10A-01D-A17V-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f350676a-e308-42fe-8297-9d18ba7027b1	bba7b385-f707-4654-ba9e-cd3bbebf4859	g.chr1:155931990G>A	uc001fmt.2	-	10	1243	c.1125C>T	c.(1123-1125)CTC>CTT	p.L375L	ARHGEF2_uc001fmr.2_Silent_p.L347L|ARHGEF2_uc001fms.2_Silent_p.L374L|ARHGEF2_uc001fmu.2_Silent_p.L419L|ARHGEF2_uc010pgt.1_Silent_p.L348L|ARHGEF2_uc010pgu.1_Silent_p.L420L	NM_001162383	NP_001155855	Q92974	ARHG2_HUMAN	Rho/Rac guanine nucleotide exchange factor 2	375	DH.				actin filament organization|apoptosis|cell division|cell morphogenesis|induction of apoptosis by extracellular signals|intracellular protein transport|mitosis|negative regulation of microtubule depolymerization|nerve growth factor receptor signaling pathway|positive regulation of NF-kappaB transcription factor activity|regulation of cell proliferation|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|Golgi apparatus|microtubule|ruffle membrane|spindle|tight junction	microtubule binding|Rac GTPase binding|Rac guanyl-nucleotide exchange factor activity|zinc ion binding			ovary(1)	1	Hepatocellular(266;0.133)|all_hematologic(923;0.145)|all_neural(408;0.195)					CGTGCCGCTTGAGCACGGCGG	0.637		NaN											0	0	0	0.000184323	0	25	44									
GPATCH4	54865	broad.mit.edu	37	1	156565923	156565923	+	Silent	SNP	A	A	G			TCGA-DK-A2I1-01A-11D-A17V-08	TCGA-DK-A2I1-10A-01D-A17V-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f350676a-e308-42fe-8297-9d18ba7027b1	bba7b385-f707-4654-ba9e-cd3bbebf4859	g.chr1:156565923A>G	uc001fpm.2	-	7	480	c.441T>C	c.(439-441)ATT>ATC	p.I147I	APOA1BP_uc010php.1_Intron|GPATCH4_uc001fpl.2_Silent_p.I142I	NM_015590	NP_056405	Q5T3I0	GPTC4_HUMAN	G patch domain containing 4 isoform 1	142						intracellular	nucleic acid binding			ovary(1)	1	all_hematologic(923;0.088)|Hepatocellular(266;0.158)					CATCAGTCAGACTGTTAGGGG	0.428		NaN											0	0	0	6.4e-05	0	3	113									
COPA	1314	broad.mit.edu	37	1	160267491	160267492	+	Missense_Mutation	DNP	CC	CC	AA			TCGA-DK-A2I1-01A-11D-A17V-08	TCGA-DK-A2I1-10A-01D-A17V-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f350676a-e308-42fe-8297-9d18ba7027b1	bba7b385-f707-4654-ba9e-cd3bbebf4859	g.chr1:160267491_160267492CC>AA	uc009wti.2	-	20	2415_2416	c.2021_2022GG>TT	c.(2020-2022)TGG>TTT	p.W674F	COPA_uc001fvv.3_Missense_Mutation_p.W683F	NM_004371	NP_004362	P53621	COPA_HUMAN	coatomer protein complex, subunit alpha isoform	674					COPI coating of Golgi vesicle|intracellular protein transport|pancreatic juice secretion|retrograde vesicle-mediated transport, Golgi to ER	COPI vesicle coat|cytosol|extracellular space|microsome|soluble fraction	hormone activity|structural molecule activity			ovary(1)|skin(1)	2	all_cancers(52;8.15e-18)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.111)			CCAGCTTTTCCCAGCAGTTCTT	0.475		NaN											0	0	0	6.4e-05	0	11	278									
FCGR3B	2215	broad.mit.edu	37	1	161599754	161599754	+	Missense_Mutation	SNP	G	G	C			TCGA-DK-A2I1-01A-11D-A17V-08	TCGA-DK-A2I1-10A-01D-A17V-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f350676a-e308-42fe-8297-9d18ba7027b1	bba7b385-f707-4654-ba9e-cd3bbebf4859	g.chr1:161599754G>C	uc009wul.2	-	3	407	c.133C>G	c.(133-135)CTG>GTG	p.L45V		NM_000570	NP_000561	O75015	FCG3B_HUMAN	low affinity immunoglobulin gamma Fc region	45	Ig-like C2-type 1.				immune response	anchored to membrane|extracellular region|plasma membrane	IgG binding|receptor activity				0	all_cancers(52;4.89e-16)|all_hematologic(112;0.0207)		BRCA - Breast invasive adenocarcinoma(70;0.00376)		Abciximab(DB00054)|Adalimumab(DB00051)|Alefacept(DB00092)|Alemtuzumab(DB00087)|Basiliximab(DB00074)|Bevacizumab(DB00112)|Cetuximab(DB00002)|Daclizumab(DB00111)|Efalizumab(DB00095)|Etanercept(DB00005)|Gemtuzumab ozogamicin(DB00056)|Ibritumomab(DB00078)|Immune globulin(DB00028)|Muromonab(DB00075)|Natalizumab(DB00108)|Palivizumab(DB00110)|Rituximab(DB00073)|Tositumomab(DB00081)|Trastuzumab(DB00072)	TGGCACTTCAGAGTCACACTG	0.532		NaN											0	0	0	0.00058488	0	31	308									
SRGAP2	23380	broad.mit.edu	37	1	206623769	206623769	+	Nonsense_Mutation	SNP	C	C	G			TCGA-DK-A2I1-01A-11D-A17V-08	TCGA-DK-A2I1-10A-01D-A17V-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f350676a-e308-42fe-8297-9d18ba7027b1	bba7b385-f707-4654-ba9e-cd3bbebf4859	g.chr1:206623769C>G	uc001hdy.2	+	16	2210	c.1877C>G	c.(1876-1878)TCA>TGA	p.S626*	SRGAP2_uc010prt.1_Nonsense_Mutation_p.S549*|SRGAP2_uc001hdx.2_Nonsense_Mutation_p.S626*|SRGAP2_uc010pru.1_Nonsense_Mutation_p.S549*|SRGAP2_uc010prv.1_Nonsense_Mutation_p.S550*	NM_015326	NP_056141	O75044	FNBP2_HUMAN	SLIT-ROBO Rho GTPase activating protein 2	713					axon guidance|regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity|protein binding				0	Breast(84;0.137)					GTTGAAGACTCAACCCAGGAT	0.552		NaN											0	0	0	6.40141e-05	0	8	23									
IARS2	55699	broad.mit.edu	37	1	220276871	220276871	+	Missense_Mutation	SNP	G	G	A			TCGA-DK-A2I1-01A-11D-A17V-08	TCGA-DK-A2I1-10A-01D-A17V-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f350676a-e308-42fe-8297-9d18ba7027b1	bba7b385-f707-4654-ba9e-cd3bbebf4859	g.chr1:220276871G>A	uc001hmc.2	+	8	1137	c.1033G>A	c.(1033-1035)GAA>AAA	p.E345K		NM_018060	NP_060530	Q9NSE4	SYIM_HUMAN	mitochondrial isoleucine tRNA synthetase	345					isoleucyl-tRNA aminoacylation	mitochondrial matrix	ATP binding|isoleucine-tRNA ligase activity			ovary(2)|skin(2)	4				GBM - Glioblastoma multiforme(131;0.0554)	L-Isoleucine(DB00167)	TTCTACTTTGGAAACAACATT	0.358		NaN											0	0	0	0.000184323	0	28	63									
LYST	1130	broad.mit.edu	37	1	235922510	235922510	+	Missense_Mutation	SNP	C	C	T			TCGA-DK-A2I1-01A-11D-A17V-08	TCGA-DK-A2I1-10A-01D-A17V-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f350676a-e308-42fe-8297-9d18ba7027b1	bba7b385-f707-4654-ba9e-cd3bbebf4859	g.chr1:235922510C>T	uc001hxj.2	-	23	6818	c.6643G>A	c.(6643-6645)GAT>AAT	p.D2215N	LYST_uc009xgb.1_RNA|LYST_uc010pxs.1_RNA	NM_000081	NP_000072	Q99698	LYST_HUMAN	lysosomal trafficking regulator	2215					defense response to bacterium|defense response to protozoan|defense response to virus|endosome to lysosome transport via multivesicular body sorting pathway|leukocyte chemotaxis|mast cell secretory granule organization|melanosome organization|natural killer cell mediated cytotoxicity|protein transport	cytoplasm|microtubule cytoskeleton	protein binding			ovary(6)|breast(4)|central_nervous_system(2)	12	Ovarian(103;0.0634)|Breast(184;0.23)	all_cancers(173;0.00246)|Prostate(94;0.0771)|Acute lymphoblastic leukemia(190;0.228)	OV - Ovarian serous cystadenocarcinoma(106;0.000674)			GGACTGTCATCTTCTGACCTG	0.547		NaN							Chediak-Higashi_syndrome				0	0	0	0.000159656	0	35	74									
KIF26B	55083	broad.mit.edu	37	1	245772624	245772624	+	Missense_Mutation	SNP	C	C	T			TCGA-DK-A2I1-01A-11D-A17V-08	TCGA-DK-A2I1-10A-01D-A17V-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f350676a-e308-42fe-8297-9d18ba7027b1	bba7b385-f707-4654-ba9e-cd3bbebf4859	g.chr1:245772624C>T	uc001ibf.1	+	8	2148	c.1708C>T	c.(1708-1710)CCC>TCC	p.P570S	KIF26B_uc010pyq.1_Missense_Mutation_p.P570S|KIF26B_uc001ibg.1_Missense_Mutation_p.P188S	NM_018012	NP_060482	Q2KJY2	KI26B_HUMAN	kinesin family member 26B	570	Kinesin-motor.				microtubule-based movement	cytoplasm|microtubule	ATP binding|microtubule motor activity			ovary(3)	3	all_cancers(71;3.86e-05)|all_epithelial(71;0.000121)|Ovarian(71;0.0412)|all_lung(81;0.0498)|Lung NSC(105;0.0708)|Breast(184;0.127)		OV - Ovarian serous cystadenocarcinoma(106;0.022)			GGGCATCATTCCCTGTGCCAT	0.532		NaN											0	0	0	6.40141e-05	0	11	18									
OR2G2	81470	broad.mit.edu	37	1	247751675	247751675	+	Missense_Mutation	SNP	G	G	C			TCGA-DK-A2I1-01A-11D-A17V-08	TCGA-DK-A2I1-10A-01D-A17V-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f350676a-e308-42fe-8297-9d18ba7027b1	bba7b385-f707-4654-ba9e-cd3bbebf4859	g.chr1:247751675G>C	uc010pyy.1	+	1	14	c.14G>C	c.(13-15)AGA>ACA	p.R5T		NM_001001915	NP_001001915	Q8NGZ5	OR2G2_HUMAN	olfactory receptor, family 2, subfamily G,	5	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	all_cancers(71;3.24e-05)|all_epithelial(71;1.3e-05)|Breast(184;0.0149)|Ovarian(71;0.0377)|all_lung(81;0.0662)|Lung NSC(105;0.0724)		OV - Ovarian serous cystadenocarcinoma(106;0.017)			GGGATGGTGAGACATACCAAT	0.413		NaN											0	0	0	0.000491102	0	24	98									
OR2G2	81470	broad.mit.edu	37	1	247751725	247751725	+	Missense_Mutation	SNP	G	G	C			TCGA-DK-A2I1-01A-11D-A17V-08	TCGA-DK-A2I1-10A-01D-A17V-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f350676a-e308-42fe-8297-9d18ba7027b1	bba7b385-f707-4654-ba9e-cd3bbebf4859	g.chr1:247751725G>C	uc010pyy.1	+	1	64	c.64G>C	c.(64-66)GAT>CAT	p.D22H		NM_001001915	NP_001001915	Q8NGZ5	OR2G2_HUMAN	olfactory receptor, family 2, subfamily G,	22	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	all_cancers(71;3.24e-05)|all_epithelial(71;1.3e-05)|Breast(184;0.0149)|Ovarian(71;0.0377)|all_lung(81;0.0662)|Lung NSC(105;0.0724)		OV - Ovarian serous cystadenocarcinoma(106;0.017)			AGGGTTTTCTGATTATCCTCA	0.413		NaN											0	0	0	0.000147802	0	22	109									
OR2G2	81470	broad.mit.edu	37	1	247752001	247752001	+	Missense_Mutation	SNP	G	G	A			TCGA-DK-A2I1-01A-11D-A17V-08	TCGA-DK-A2I1-10A-01D-A17V-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f350676a-e308-42fe-8297-9d18ba7027b1	bba7b385-f707-4654-ba9e-cd3bbebf4859	g.chr1:247752001G>A	uc010pyy.1	+	1	340	c.340G>A	c.(340-342)GAG>AAG	p.E114K		NM_001001915	NP_001001915	Q8NGZ5	OR2G2_HUMAN	olfactory receptor, family 2, subfamily G,	114	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	all_cancers(71;3.24e-05)|all_epithelial(71;1.3e-05)|Breast(184;0.0149)|Ovarian(71;0.0377)|all_lung(81;0.0662)|Lung NSC(105;0.0724)		OV - Ovarian serous cystadenocarcinoma(106;0.017)			GGGATCCACTGAGTGCGTCCT	0.527		NaN											0	0	0	0.000509022	0	40	122									
OR2G2	81470	broad.mit.edu	37	1	247752462	247752462	+	Missense_Mutation	SNP	G	G	T			TCGA-DK-A2I1-01A-11D-A17V-08	TCGA-DK-A2I1-10A-01D-A17V-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f350676a-e308-42fe-8297-9d18ba7027b1	bba7b385-f707-4654-ba9e-cd3bbebf4859	g.chr1:247752462G>T	uc010pyy.1	+	1	801	c.801G>T	c.(799-801)AAG>AAT	p.K267N		NM_001001915	NP_001001915	Q8NGZ5	OR2G2_HUMAN	olfactory receptor, family 2, subfamily G,	267	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	all_cancers(71;3.24e-05)|all_epithelial(71;1.3e-05)|Breast(184;0.0149)|Ovarian(71;0.0377)|all_lung(81;0.0662)|Lung NSC(105;0.0724)		OV - Ovarian serous cystadenocarcinoma(106;0.017)			agCCAGCCAAGAGTAGATCCA	0.383		NaN											1	0	1.62957e-23	0.000374591	2.69465e-22	41	145									
OR2G2	81470	broad.mit.edu	37	1	247752580	247752580	+	Missense_Mutation	SNP	G	G	T			TCGA-DK-A2I1-01A-11D-A17V-08	TCGA-DK-A2I1-10A-01D-A17V-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f350676a-e308-42fe-8297-9d18ba7027b1	bba7b385-f707-4654-ba9e-cd3bbebf4859	g.chr1:247752580G>T	uc010pyy.1	+	1	919	c.919G>T	c.(919-921)GTT>TTT	p.V307F		NM_001001915	NP_001001915	Q8NGZ5	OR2G2_HUMAN	olfactory receptor, family 2, subfamily G,	307	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	all_cancers(71;3.24e-05)|all_epithelial(71;1.3e-05)|Breast(184;0.0149)|Ovarian(71;0.0377)|all_lung(81;0.0662)|Lung NSC(105;0.0724)		OV - Ovarian serous cystadenocarcinoma(106;0.017)			ATTAAAGAAAGTTCTAGCAAA	0.338		NaN											1	0	2.08457e-15	0.000339439	3.39619e-14	32	117									
FBXO18	84893	broad.mit.edu	37	10	5959443	5959443	+	Missense_Mutation	SNP	G	G	C			TCGA-DK-A2I1-01A-11D-A17V-08	TCGA-DK-A2I1-10A-01D-A17V-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f350676a-e308-42fe-8297-9d18ba7027b1	bba7b385-f707-4654-ba9e-cd3bbebf4859	g.chr10:5959443G>C	uc001iis.2	+	11	1944	c.1849G>C	c.(1849-1851)GAA>CAA	p.E617Q	FBXO18_uc001iir.2_Missense_Mutation_p.E543Q|FBXO18_uc009xig.2_Missense_Mutation_p.E543Q|FBXO18_uc001iit.2_Missense_Mutation_p.E668Q	NM_178150	NP_835363	Q8NFZ0	FBX18_HUMAN	F-box only protein, helicase, 18 isoform 2	617					DNA repair	nucleus	ATP binding|ATP-dependent DNA helicase activity|DNA binding			ovary(2)|skin(1)	3						GGAGTGCACAGAAGAGGCGCA	0.577		NaN											0	0	0	0.00047179	0	22	43									
DCLRE1C	64421	broad.mit.edu	37	10	14974951	14974951	+	Missense_Mutation	SNP	G	G	C			TCGA-DK-A2I1-01A-11D-A17V-08	TCGA-DK-A2I1-10A-01D-A17V-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f350676a-e308-42fe-8297-9d18ba7027b1	bba7b385-f707-4654-ba9e-cd3bbebf4859	g.chr10:14974951G>C	uc001inn.2	-	9	767	c.682C>G	c.(682-684)CAT>GAT	p.H228D	DCLRE1C_uc010qbx.1_Missense_Mutation_p.H228D|DCLRE1C_uc001inl.2_Missense_Mutation_p.H108D|DCLRE1C_uc009xji.2_Missense_Mutation_p.H113D|DCLRE1C_uc001inm.2_Missense_Mutation_p.H108D|DCLRE1C_uc001ino.2_Missense_Mutation_p.H113D|DCLRE1C_uc009xjh.2_RNA|DCLRE1C_uc001inp.2_Missense_Mutation_p.H108D|DCLRE1C_uc001inq.2_Missense_Mutation_p.H108D|DCLRE1C_uc001inr.2_Missense_Mutation_p.H113D|DCLRE1C_uc009xjj.1_RNA	NM_001033855	NP_001029027	Q96SD1	DCR1C_HUMAN	artemis protein isoform a	228					DNA recombination	nucleus	5'-3' exonuclease activity|single-stranded DNA specific endodeoxyribonuclease activity			ovary(1)	1						TTATTCACATGAACCTAAGGC	0.393		NaN						Involved_in_tolerance_or_repair_of_DNA_crosslinks|NHEJ					0	0	0	0.000132079	0	19	171									
CACNB2	783	broad.mit.edu	37	10	18803285	18803285	+	Missense_Mutation	SNP	C	C	G			TCGA-DK-A2I1-01A-11D-A17V-08	TCGA-DK-A2I1-10A-01D-A17V-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f350676a-e308-42fe-8297-9d18ba7027b1	bba7b385-f707-4654-ba9e-cd3bbebf4859	g.chr10:18803285C>G	uc001ipr.2	+	7	851	c.791C>G	c.(790-792)CCC>CGC	p.P264R	CACNB2_uc009xjz.1_Intron|CACNB2_uc001ips.2_Intron|CACNB2_uc001ipt.2_Intron|CACNB2_uc010qcl.1_Intron|CACNB2_uc001ipu.2_Missense_Mutation_p.P236R|CACNB2_uc001ipv.2_Intron|CACNB2_uc009xka.1_Intron|CACNB2_uc001ipw.2_Intron|CACNB2_uc001ipx.2_Missense_Mutation_p.P209R|CACNB2_uc009xkb.1_Intron|CACNB2_uc010qcm.1_Missense_Mutation_p.P210R|CACNB2_uc001ipz.2_Intron|CACNB2_uc001ipy.2_Missense_Mutation_p.P210R|CACNB2_uc010qcn.1_Intron|CACNB2_uc010qco.1_Intron|CACNB2_uc001iqa.2_Missense_Mutation_p.P216R|NSUN6_uc001iqb.2_Intron	NM_201596	NP_963890	Q08289	CACB2_HUMAN	calcium channel, voltage-dependent, beta 2	264					axon guidance|neuromuscular junction development	integral to plasma membrane|sarcolemma|voltage-gated calcium channel complex	protein binding|voltage-gated calcium channel activity			large_intestine(1)|central_nervous_system(1)|skin(1)	3					Magnesium Sulfate(DB00653)|Verapamil(DB00661)	AAAAGAATGCCCTTCTTTAAG	0.468		NaN											0	0	0	0.000339439	0	29	142									
SYT15	83849	broad.mit.edu	37	10	46967615	46967615	+	Silent	SNP	C	C	T			TCGA-DK-A2I1-01A-11D-A17V-08	TCGA-DK-A2I1-10A-01D-A17V-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f350676a-e308-42fe-8297-9d18ba7027b1	bba7b385-f707-4654-ba9e-cd3bbebf4859	g.chr10:46967615C>T	uc001jea.2	-	4	615	c.462G>A	c.(460-462)TCG>TCA	p.S154S	SYT15_uc001jdz.2_Silent_p.S154S|SYT15_uc001jeb.2_Silent_p.S32S|SYT15_uc010qfp.1_RNA	NM_031912	NP_114118	Q9BQS2	SYT15_HUMAN	synaptotagmin XV isoform a	154	Cytoplasmic (Potential).|C2 1.					integral to membrane|plasma membrane					0						CATATTCCACCGAGAACCACA	0.622		NaN											0	0	0	0.000274275	0	9	95									
C10orf81	79949	broad.mit.edu	37	10	115534019	115534019	+	Nonsense_Mutation	SNP	G	G	T			TCGA-DK-A2I1-01A-11D-A17V-08	TCGA-DK-A2I1-10A-01D-A17V-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f350676a-e308-42fe-8297-9d18ba7027b1	bba7b385-f707-4654-ba9e-cd3bbebf4859	g.chr10:115534019G>T	uc001lat.1	+	8	1250	c.688G>T	c.(688-690)GAA>TAA	p.E230*	C10orf81_uc001lar.1_Nonsense_Mutation_p.E236*|C10orf81_uc009xyc.1_Nonsense_Mutation_p.E148*|C10orf81_uc001las.1_Nonsense_Mutation_p.E148*|C10orf81_uc001lau.1_Nonsense_Mutation_p.E50*	NM_024889	NP_079165	Q5SXH7	CJ081_HUMAN	hypothetical protein LOC79949	230										central_nervous_system(1)	1		Colorectal(252;0.175)		Epithelial(162;0.0181)|all cancers(201;0.0204)		TGATTCTGGTGAATCCATTGA	0.378		NaN											1	0	2.47316e-13	0.00058488	3.98229e-12	33	45									
FAM160B1	57700	broad.mit.edu	37	10	116602857	116602857	+	Missense_Mutation	SNP	C	C	A			TCGA-DK-A2I1-01A-11D-A17V-08	TCGA-DK-A2I1-10A-01D-A17V-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f350676a-e308-42fe-8297-9d18ba7027b1	bba7b385-f707-4654-ba9e-cd3bbebf4859	g.chr10:116602857C>A	uc001lcb.2	+	6	1023	c.688C>A	c.(688-690)CAT>AAT	p.H230N	FAM160B1_uc001lcc.2_Missense_Mutation_p.H230N	NM_020940	NP_065991	Q5W0V3	F16B1_HUMAN	hypothetical protein LOC57700 isoform a	230										lung(1)	1						TGAGCCTCCTCATCAGATGGA	0.473		NaN											1	0	1.99824e-07	0.000566183	3.17134e-06	18	64									
FAM160B1	57700	broad.mit.edu	37	10	116602895	116602895	+	Silent	SNP	C	C	T			TCGA-DK-A2I1-01A-11D-A17V-08	TCGA-DK-A2I1-10A-01D-A17V-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f350676a-e308-42fe-8297-9d18ba7027b1	bba7b385-f707-4654-ba9e-cd3bbebf4859	g.chr10:116602895C>T	uc001lcb.2	+	6	1061	c.726C>T	c.(724-726)CTC>CTT	p.L242L	FAM160B1_uc001lcc.2_Silent_p.L242L	NM_020940	NP_065991	Q5W0V3	F16B1_HUMAN	hypothetical protein LOC57700 isoform a	242										lung(1)	1						TGGATAACCTCAGTGTCACCT	0.438		NaN											0	0	0	0.000175454	0	20	72									
UROS	7390	broad.mit.edu	37	10	127505020	127505020	+	Missense_Mutation	SNP	C	C	G			TCGA-DK-A2I1-01A-11D-A17V-08	TCGA-DK-A2I1-10A-01D-A17V-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f350676a-e308-42fe-8297-9d18ba7027b1	bba7b385-f707-4654-ba9e-cd3bbebf4859	g.chr10:127505020C>G	uc001liw.3	-	1	182	c.49G>C	c.(49-51)GAT>CAT	p.D17H	UROS_uc001liv.3_5'Flank|UROS_uc010quh.1_5'Flank|UROS_uc001lix.3_Missense_Mutation_p.D17H|UROS_uc001liy.3_RNA|UROS_uc001liz.2_5'Flank	NM_000375	NP_000366	P10746	HEM4_HUMAN	uroporphyrinogen III synthase	17					heme biosynthetic process|uroporphyrinogen III biosynthetic process	cytosol|mitochondrion	uroporphyrinogen-III synthase activity				0		all_lung(145;0.00756)|Lung NSC(174;0.0116)|Colorectal(57;0.0855)|all_neural(114;0.0937)|Breast(234;0.203)				ATATACGGATCCTGGCCACAG	0.502		NaN											0	0	0	0.000566183	0	17	91									
OSBPL5	114879	broad.mit.edu	37	11	3111812	3111812	+	Missense_Mutation	SNP	C	C	T			TCGA-DK-A2I1-01A-11D-A17V-08	TCGA-DK-A2I1-10A-01D-A17V-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f350676a-e308-42fe-8297-9d18ba7027b1	bba7b385-f707-4654-ba9e-cd3bbebf4859	g.chr11:3111812C>T	uc001lxk.2	-	20	2532	c.2374G>A	c.(2374-2376)GAG>AAG	p.E792K	OSBPL5_uc010qxq.1_Missense_Mutation_p.E703K|OSBPL5_uc009ydw.2_Missense_Mutation_p.E724K|OSBPL5_uc001lxl.2_Missense_Mutation_p.E724K|OSBPL5_uc001lxj.2_Missense_Mutation_p.E246K	NM_020896	NP_065947	Q9H0X9	OSBL5_HUMAN	oxysterol-binding protein-like protein 5 isoform	792					cholesterol metabolic process|cholesterol transport|Golgi to plasma membrane transport	cytosol	oxysterol binding|protein binding			large_intestine(2)|central_nervous_system(1)	3		all_epithelial(84;0.000236)|Medulloblastoma(188;0.00106)|Breast(177;0.00328)|Ovarian(85;0.00556)|all_neural(188;0.00681)		BRCA - Breast invasive adenocarcinoma(625;0.00607)|LUSC - Lung squamous cell carcinoma(625;0.207)		CCATCCTGCTCCTCGTCTGAG	0.682		NaN											0	0	0	0.000566183	0	16	33									
SPTY2D1	144108	broad.mit.edu	37	11	18637037	18637037	+	Missense_Mutation	SNP	C	C	T			TCGA-DK-A2I1-01A-11D-A17V-08	TCGA-DK-A2I1-10A-01D-A17V-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f350676a-e308-42fe-8297-9d18ba7027b1	bba7b385-f707-4654-ba9e-cd3bbebf4859	g.chr11:18637037C>T	uc001moy.2	-	3	1000	c.784G>A	c.(784-786)GAG>AAG	p.E262K	SPTY2D1_uc010rdi.1_Missense_Mutation_p.E262K	NM_194285	NP_919261	Q68D10	SPT2_HUMAN	SPT2, Suppressor of Ty, domain containing 1	262										breast(1)	1						GATTTCTTCTCAGCATGAGGA	0.483		NaN											0	0	0	0.000147903	0	50	33									
BBOX1	8424	broad.mit.edu	37	11	27148986	27148986	+	Missense_Mutation	SNP	G	G	A			TCGA-DK-A2I1-01A-11D-A17V-08	TCGA-DK-A2I1-10A-01D-A17V-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f350676a-e308-42fe-8297-9d18ba7027b1	bba7b385-f707-4654-ba9e-cd3bbebf4859	g.chr11:27148986G>A	uc001mre.1	+	9	1518	c.1150G>A	c.(1150-1152)GAG>AAG	p.E384K	BBOX1_uc009yih.1_Missense_Mutation_p.E384K|BBOX1_uc001mrg.1_Missense_Mutation_p.E384K	NM_003986	NP_003977	O75936	BODG_HUMAN	gamma-butyrobetaine dioxygenase	384					carnitine biosynthetic process	actin cytoskeleton|cytosol|intracellular membrane-bounded organelle	gamma-butyrobetaine dioxygenase activity|iron ion binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|zinc ion binding			ovary(1)	1					Succinic acid(DB00139)|Vitamin C(DB00126)	GCAGAGGGTGGAGAATGGAAA	0.413		NaN											0	0	0	0.000132079	0	19	50									
QSER1	79832	broad.mit.edu	37	11	32975498	32975498	+	Missense_Mutation	SNP	C	C	G			TCGA-DK-A2I1-01A-11D-A17V-08	TCGA-DK-A2I1-10A-01D-A17V-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f350676a-e308-42fe-8297-9d18ba7027b1	bba7b385-f707-4654-ba9e-cd3bbebf4859	g.chr11:32975498C>G	uc001mty.2	+	5	4153	c.3886C>G	c.(3886-3888)CTC>GTC	p.L1296V	QSER1_uc001mtz.1_Missense_Mutation_p.L1057V|QSER1_uc001mua.2_Missense_Mutation_p.L801V	NM_001076786	NP_001070254	Q2KHR3	QSER1_HUMAN	glutamine and serine rich 1	1296										ovary(3)|central_nervous_system(2)|skin(1)	6	Breast(20;0.158)					gcaagaacctctccactctac	0.333		NaN											0	0	0	0.000442599	0	9	17									
HIPK3	10114	broad.mit.edu	37	11	33308267	33308267	+	Missense_Mutation	SNP	C	C	T			TCGA-DK-A2I1-01A-11D-A17V-08	TCGA-DK-A2I1-10A-01D-A17V-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f350676a-e308-42fe-8297-9d18ba7027b1	bba7b385-f707-4654-ba9e-cd3bbebf4859	g.chr11:33308267C>T	uc001mul.1	+	2	577	c.307C>T	c.(307-309)CAC>TAC	p.H103Y	HIPK3_uc001mum.1_Missense_Mutation_p.H103Y|HIPK3_uc009yjv.1_Missense_Mutation_p.H103Y	NM_005734	NP_005725	Q9H422	HIPK3_HUMAN	homeodomain interacting protein kinase 3 isoform	103					anti-apoptosis|apoptosis|negative regulation of JUN kinase activity|peptidyl-serine phosphorylation|peptidyl-threonine phosphorylation|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm	ATP binding|protein serine/threonine kinase activity			large_intestine(1)|skin(1)|stomach(1)|ovary(1)|pancreas(1)	5						ACAGCAAGCTCACGTGCAGGC	0.502		NaN											0	0	0	9.7654e-05	0	19	19									
SPI1	6688	broad.mit.edu	37	11	47397226	47397226	+	Missense_Mutation	SNP	C	C	T			TCGA-DK-A2I1-01A-11D-A17V-08	TCGA-DK-A2I1-10A-01D-A17V-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f350676a-e308-42fe-8297-9d18ba7027b1	bba7b385-f707-4654-ba9e-cd3bbebf4859	g.chr11:47397226C>T	uc001nfc.1	-	2	323	c.100G>A	c.(100-102)GAG>AAG	p.E34K	SPI1_uc001nfb.1_Missense_Mutation_p.E35K|SLC39A13_uc001nfd.2_Intron|SPI1_uc009ylp.1_Missense_Mutation_p.E28K	NM_003120	NP_003111	P17947	SPI1_HUMAN	hematopoietic transcription factor PU.1 isoform	34					negative regulation of transcription from RNA polymerase II promoter|positive regulation of transcription, DNA-dependent|regulation of erythrocyte differentiation	nucleus	protein binding|RNA binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			lung(1)|central_nervous_system(1)	2				Lung(87;0.0967)		GGGTAATACTCGTGCGTTTGG	0.622		NaN											0	0	0	0.000147903	0	44	36									
MS4A3	932	broad.mit.edu	37	11	59828720	59828720	+	Silent	SNP	G	G	C			TCGA-DK-A2I1-01A-11D-A17V-08	TCGA-DK-A2I1-10A-01D-A17V-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f350676a-e308-42fe-8297-9d18ba7027b1	bba7b385-f707-4654-ba9e-cd3bbebf4859	g.chr11:59828720G>C	uc001nom.2	+	2	215	c.87G>C	c.(85-87)CTG>CTC	p.L29L	MS4A3_uc001non.2_Silent_p.L29L|MS4A3_uc001noo.2_Intron	NM_006138	NP_006129	Q96HJ5	MS4A3_HUMAN	membrane-spanning 4-domains, subfamily A, member	29	Cytoplasmic (Potential).					endomembrane system|integral to membrane|perinuclear region of cytoplasm	protein binding|receptor activity			ovary(2)|skin(1)	3		all_epithelial(135;0.245)				CAGAAGAGCTGAATACTTCTG	0.478		NaN											0	0	0	0.000132358	0	37	70									
CD6	923	broad.mit.edu	37	11	60785351	60785351	+	Missense_Mutation	SNP	C	C	T			TCGA-DK-A2I1-01A-11D-A17V-08	TCGA-DK-A2I1-10A-01D-A17V-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f350676a-e308-42fe-8297-9d18ba7027b1	bba7b385-f707-4654-ba9e-cd3bbebf4859	g.chr11:60785351C>T	uc001nqq.2	+	11	1926	c.1703C>T	c.(1702-1704)TCA>TTA	p.S568L	CD6_uc001nqp.2_Missense_Mutation_p.S568L|CD6_uc001nqr.2_Missense_Mutation_p.S536L|CD6_uc001nqs.2_RNA|CD6_uc001nqt.2_Missense_Mutation_p.S527L	NM_006725	NP_006716	P30203	CD6_HUMAN	CD6 molecule precursor	568	Cytoplasmic (Potential).				cell adhesion	cell surface|integral to plasma membrane	scavenger receptor activity			pancreas(1)	1						AGCACCTCTTCAGGGGAGGAT	0.567		NaN											0	0	0	0.000375601	0	22	61									
HRASLS2	54979	broad.mit.edu	37	11	63320520	63320520	+	Silent	SNP	C	C	T			TCGA-DK-A2I1-01A-11D-A17V-08	TCGA-DK-A2I1-10A-01D-A17V-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f350676a-e308-42fe-8297-9d18ba7027b1	bba7b385-f707-4654-ba9e-cd3bbebf4859	g.chr11:63320520C>T	uc001nxg.1	-	4	464	c.405G>A	c.(403-405)ACG>ACA	p.T135T		NM_017878	NP_060348	Q9NWW9	HRSL2_HUMAN	HRAS-like suppressor 2	135					lipid catabolic process	cytoplasm	acyltransferase activity|hydrolase activity				0						CACCTACTGTCGTGACTGCAC	0.562		NaN											0	0	0	9.22233e-05	0	27	95									
PLCB3	5331	broad.mit.edu	37	11	64032897	64032897	+	Silent	SNP	C	C	T			TCGA-DK-A2I1-01A-11D-A17V-08	TCGA-DK-A2I1-10A-01D-A17V-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f350676a-e308-42fe-8297-9d18ba7027b1	bba7b385-f707-4654-ba9e-cd3bbebf4859	g.chr11:64032897C>T	uc001nzb.2	+	25	2958	c.2958C>T	c.(2956-2958)GTC>GTT	p.V986V	PLCB3_uc009ypg.1_Silent_p.V986V|PLCB3_uc009yph.1_Silent_p.V919V|PLCB3_uc009ypi.2_Silent_p.V986V	NM_000932	NP_000923	Q01970	PLCB3_HUMAN	phospholipase C beta 3	986					intracellular signal transduction|lipid catabolic process|synaptic transmission	cytosol	calcium ion binding|calmodulin binding|phosphatidylinositol phospholipase C activity|signal transducer activity			ovary(1)|pancreas(1)	2						GGAAGGCAGTCACCCTCACCC	0.682		NaN											0	0	0	3.86212e-05	0	8	19									
SLC29A2	3177	broad.mit.edu	37	11	66134019	66134019	+	Silent	SNP	G	G	T			TCGA-DK-A2I1-01A-11D-A17V-08	TCGA-DK-A2I1-10A-01D-A17V-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f350676a-e308-42fe-8297-9d18ba7027b1	bba7b385-f707-4654-ba9e-cd3bbebf4859	g.chr11:66134019G>T	uc001oht.2	-	8	979	c.750C>A	c.(748-750)CCC>CCA	p.P250P	SLC29A2_uc001ohs.2_Silent_p.P130P|SLC29A2_uc010rpb.1_RNA|SLC29A2_uc009yrf.2_Silent_p.P130P|SLC29A2_uc001ohu.2_Silent_p.P250P|SLC29A2_uc001ohv.2_Intron|uc001ohw.1_5'Flank	NM_001532	NP_001523	Q14542	S29A2_HUMAN	solute carrier family 29 (nucleoside	250					cell proliferation|nucleobase, nucleoside and nucleotide metabolic process	basolateral plasma membrane|integral to plasma membrane|nuclear membrane|nucleolus	nucleoside transmembrane transporter activity			ovary(1)	1						GGGGACTACTGGGAATCCCGT	0.582		NaN											1	0	6.40141e-05	6.40141e-05	0.000982083	10	35									
ANKRD13D	338692	broad.mit.edu	37	11	67059207	67059207	+	Silent	SNP	C	C	T			TCGA-DK-A2I1-01A-11D-A17V-08	TCGA-DK-A2I1-10A-01D-A17V-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f350676a-e308-42fe-8297-9d18ba7027b1	bba7b385-f707-4654-ba9e-cd3bbebf4859	g.chr11:67059207C>T	uc001okc.1	+	6	781	c.270C>T	c.(268-270)TTC>TTT	p.F90F	ANKRD13D_uc001okd.1_Silent_p.F177F|ANKRD13D_uc001oke.1_Silent_p.F90F	NM_207354	NP_997237	Q6ZTN6	AN13D_HUMAN	ankyrin repeat domain 13 family, member D	90										ovary(1)	1			BRCA - Breast invasive adenocarcinoma(15;2.26e-06)			GCTTCATCTTCAAGGGCCAGG	0.612		NaN											0	0	0	0.000157383	0	7	42									
USP35	57558	broad.mit.edu	37	11	77919932	77919932	+	Silent	SNP	C	C	G			TCGA-DK-A2I1-01A-11D-A17V-08	TCGA-DK-A2I1-10A-01D-A17V-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f350676a-e308-42fe-8297-9d18ba7027b1	bba7b385-f707-4654-ba9e-cd3bbebf4859	g.chr11:77919932C>G	uc009yva.1	+	9	1761	c.1515C>G	c.(1513-1515)CTC>CTG	p.L505L	USP35_uc001oze.2_Silent_p.L261L|USP35_uc001ozc.2_Silent_p.L73L|USP35_uc010rsp.1_Intron|USP35_uc001ozd.2_Silent_p.L116L|USP35_uc001ozf.2_Silent_p.L236L	NM_020798	NP_065849	Q9P2H5	UBP35_HUMAN	ubiquitin specific protease 35	505					ubiquitin-dependent protein catabolic process		binding|cysteine-type peptidase activity|ubiquitin thiolesterase activity			lung(2)|ovary(1)	3	all_cancers(14;3.77e-18)|all_epithelial(13;6.16e-21)|Breast(9;5.6e-16)|Ovarian(111;0.152)		OV - Ovarian serous cystadenocarcinoma(8;1.04e-25)			AGAACTTCCTCTCCGCATCCT	0.622		NaN											0	0	0	0.000147903	0	53	98									
DYNC2H1	79659	broad.mit.edu	37	11	103152912	103152912	+	Missense_Mutation	SNP	G	G	T			TCGA-DK-A2I1-01A-11D-A17V-08	TCGA-DK-A2I1-10A-01D-A17V-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f350676a-e308-42fe-8297-9d18ba7027b1	bba7b385-f707-4654-ba9e-cd3bbebf4859	g.chr11:103152912G>T	uc001pho.2	+	72	10910	c.10766G>T	c.(10765-10767)TGG>TTG	p.W3589L	DYNC2H1_uc001phn.1_Missense_Mutation_p.W3596L|DYNC2H1_uc009yxe.1_Intron	NM_001080463	NP_001073932	Q8NCM8	DYHC2_HUMAN	dynein, cytoplasmic 2, heavy chain 1	3589					cell projection organization|Golgi organization|microtubule-based movement|multicellular organismal development	cilium axoneme|dynein complex|Golgi apparatus|microtubule|plasma membrane	ATP binding|ATPase activity|microtubule motor activity				0		Acute lymphoblastic leukemia(157;0.000966)|all_hematologic(158;0.00348)		BRCA - Breast invasive adenocarcinoma(274;0.000177)|Epithelial(105;0.0785)		CAATAGGAATGGGATACGTTT	0.284		NaN											1	0	5.01169e-05	0.000566183	0.000771019	13	83									
PIH1D2	120379	broad.mit.edu	37	11	111941994	111941994	+	Silent	SNP	G	G	A			TCGA-DK-A2I1-01A-11D-A17V-08	TCGA-DK-A2I1-10A-01D-A17V-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f350676a-e308-42fe-8297-9d18ba7027b1	bba7b385-f707-4654-ba9e-cd3bbebf4859	g.chr11:111941994G>A	uc001pmq.3	-	4	397	c.315C>T	c.(313-315)GTC>GTT	p.V105V	PIH1D2_uc009yyl.2_Silent_p.V105V|PIH1D2_uc001pmp.3_Silent_p.V105V|PIH1D2_uc010rws.1_Silent_p.V105V|C11orf57_uc001pmu.2_5'Flank|C11orf57_uc001pmw.3_5'Flank|C11orf57_uc001pmt.3_5'Flank|C11orf57_uc001pmr.3_5'Flank|C11orf57_uc001pmv.3_5'Flank|C11orf57_uc001pms.3_5'Flank	NM_138789	NP_620144	Q8WWB5	PIHD2_HUMAN	PIH1 domain containing 2 isoform 1	105										ovary(1)	1		all_cancers(61;1.09e-14)|all_epithelial(67;7.64e-09)|Melanoma(852;1.91e-06)|all_hematologic(158;0.000405)|Acute lymphoblastic leukemia(157;0.000967)|Breast(348;0.0112)|all_neural(223;0.0281)|Medulloblastoma(222;0.0425)		Epithelial(105;3.19e-07)|BRCA - Breast invasive adenocarcinoma(274;6.17e-07)|all cancers(92;6.18e-06)|OV - Ovarian serous cystadenocarcinoma(223;0.0508)		CAACATCAATGACTGTGTAAG	0.358		NaN											0	0	0	0.000191422	0	34	149									
SCN4B	6330	broad.mit.edu	37	11	118023348	118023348	+	Nonsense_Mutation	SNP	C	C	T			TCGA-DK-A2I1-01A-11D-A17V-08	TCGA-DK-A2I1-10A-01D-A17V-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f350676a-e308-42fe-8297-9d18ba7027b1	bba7b385-f707-4654-ba9e-cd3bbebf4859	g.chr11:118023348C>T	uc001pse.2	-	1	283	c.41G>A	c.(40-42)TGG>TAG	p.W14*	SCN4B_uc010rxv.1_Nonsense_Mutation_p.W14*	NM_174934	NP_777594	Q8IWT1	SCN4B_HUMAN	sodium channel, voltage-gated, type IV, beta	14						voltage-gated sodium channel complex	voltage-gated sodium channel activity			skin(1)	1	all_hematologic(175;0.0487)	Medulloblastoma(222;0.0523)|all_hematologic(192;0.232)		BRCA - Breast invasive adenocarcinoma(274;3.33e-05)|Epithelial(105;0.00126)		AGTGCCCAGCCATCTCGCCGG	0.662		NaN											0	0	0	3.86212e-05	0	8	19									
PRDM10	56980	broad.mit.edu	37	11	129817136	129817136	+	Missense_Mutation	SNP	C	C	T			TCGA-DK-A2I1-01A-11D-A17V-08	TCGA-DK-A2I1-10A-01D-A17V-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f350676a-e308-42fe-8297-9d18ba7027b1	bba7b385-f707-4654-ba9e-cd3bbebf4859	g.chr11:129817136C>T	uc001qfm.2	-	5	656	c.424G>A	c.(424-426)GAG>AAG	p.E142K	PRDM10_uc001qfj.2_Missense_Mutation_p.E56K|PRDM10_uc001qfk.2_Missense_Mutation_p.E56K|PRDM10_uc001qfl.2_Missense_Mutation_p.E56K|PRDM10_uc010sbx.1_Missense_Mutation_p.E56K|PRDM10_uc001qfn.2_Missense_Mutation_p.E142K|PRDM10_uc009zct.1_Missense_Mutation_p.E174K	NM_020228	NP_064613	Q9NQV6	PRD10_HUMAN	PR domain containing 10 isoform 1	142					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			pancreas(1)	1	all_hematologic(175;0.0537)	Breast(109;0.000496)|Lung NSC(97;0.000693)|all_lung(97;0.00151)|Medulloblastoma(222;0.0425)|all_neural(223;0.0837)		OV - Ovarian serous cystadenocarcinoma(99;0.0174)|Lung(977;0.176)|LUSC - Lung squamous cell carcinoma(976;0.185)		TCAGTGTCCTCGTCCTCATCC	0.582		NaN											0	0	0	0.000228196	0	37	38									
NOP2	4839	broad.mit.edu	37	12	6670928	6670928	+	Missense_Mutation	SNP	C	C	T			TCGA-DK-A2I1-01A-11D-A17V-08	TCGA-DK-A2I1-10A-01D-A17V-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f350676a-e308-42fe-8297-9d18ba7027b1	bba7b385-f707-4654-ba9e-cd3bbebf4859	g.chr12:6670928C>T	uc001qph.1	-	11	1277	c.1097G>A	c.(1096-1098)GGA>GAA	p.G366E	NOP2_uc009zeq.1_Missense_Mutation_p.G82E|NOP2_uc001qpi.1_Missense_Mutation_p.G366E|NOP2_uc001qpj.1_Intron	NM_001033714	NP_001028886	P46087	NOP2_HUMAN	nucleolar protein 1, 120kDa	370					positive regulation of cell proliferation|rRNA processing	nucleolus	protein binding|RNA binding|S-adenosylmethionine-dependent methyltransferase activity			ovary(2)	2						GCTGGAGGCTCCCTGCAGCAT	0.607		NaN											0	0	0	0.000274275	0	9	9									
CHD4	1108	broad.mit.edu	37	12	6692229	6692229	+	Missense_Mutation	SNP	C	C	G			TCGA-DK-A2I1-01A-11D-A17V-08	TCGA-DK-A2I1-10A-01D-A17V-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f350676a-e308-42fe-8297-9d18ba7027b1	bba7b385-f707-4654-ba9e-cd3bbebf4859	g.chr12:6692229C>G	uc001qpo.2	-	27	4275	c.4111G>C	c.(4111-4113)GAG>CAG	p.E1371Q	CHD4_uc001qpn.2_Missense_Mutation_p.E1364Q|CHD4_uc001qpp.2_Missense_Mutation_p.E1396Q|uc001qpq.1_3'UTR|SCARNA11_uc001qpr.1_5'Flank	NM_001273	NP_001264	Q14839	CHD4_HUMAN	chromodomain helicase DNA binding protein 4	1371					chromatin modification|regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	microtubule organizing center|NuRD complex	ATP binding|ATP-dependent DNA helicase activity|DNA binding|zinc ion binding			central_nervous_system(2)	2						TCACCTTCCTCTGAAGCCACT	0.498		NaN											0	0	0	0.000229342	0	22	76									
CHD4	1108	broad.mit.edu	37	12	6692529	6692529	+	Missense_Mutation	SNP	C	C	G			TCGA-DK-A2I1-01A-11D-A17V-08	TCGA-DK-A2I1-10A-01D-A17V-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f350676a-e308-42fe-8297-9d18ba7027b1	bba7b385-f707-4654-ba9e-cd3bbebf4859	g.chr12:6692529C>G	uc001qpo.2	-	26	4059	c.3895G>C	c.(3895-3897)GAA>CAA	p.E1299Q	CHD4_uc001qpn.2_Missense_Mutation_p.E1292Q|CHD4_uc001qpp.2_Missense_Mutation_p.E1296Q|uc001qpq.1_3'UTR|SCARNA11_uc001qpr.1_5'Flank	NM_001273	NP_001264	Q14839	CHD4_HUMAN	chromodomain helicase DNA binding protein 4	1299	Poly-Glu.				chromatin modification|regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	microtubule organizing center|NuRD complex	ATP binding|ATP-dependent DNA helicase activity|DNA binding|zinc ion binding			central_nervous_system(2)	2						ATTTCCCGTTCTACCTCCTCT	0.532		NaN											0	0	0	0.000374591	0	40	166									
DENND5B	160518	broad.mit.edu	37	12	31604993	31604993	+	Missense_Mutation	SNP	C	C	T			TCGA-DK-A2I1-01A-11D-A17V-08	TCGA-DK-A2I1-10A-01D-A17V-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f350676a-e308-42fe-8297-9d18ba7027b1	bba7b385-f707-4654-ba9e-cd3bbebf4859	g.chr12:31604993C>T	uc001rki.1	-	5	1696	c.1510G>A	c.(1510-1512)GAG>AAG	p.E504K	DENND5B_uc001rkh.1_Missense_Mutation_p.E539K|DENND5B_uc009zjq.1_Intron|DENND5B_uc001rkj.2_Missense_Mutation_p.E526K|DENND5B_uc001rkk.1_Missense_Mutation_p.E426K	NM_144973	NP_659410	Q6ZUT9	DEN5B_HUMAN	DENN/MADD domain containing 5B	504	dDENN.					integral to membrane				ovary(1)|central_nervous_system(1)	2						GCAAAGACCTCTCGGAGCTGT	0.463		NaN											0	0	0	0.000437636	0	40	136									
RPAP3	79657	broad.mit.edu	37	12	48061621	48061621	+	Missense_Mutation	SNP	G	G	C			TCGA-DK-A2I1-01A-11D-A17V-08	TCGA-DK-A2I1-10A-01D-A17V-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f350676a-e308-42fe-8297-9d18ba7027b1	bba7b385-f707-4654-ba9e-cd3bbebf4859	g.chr12:48061621G>C	uc001rpr.2	-	15	1843	c.1727C>G	c.(1726-1728)TCT>TGT	p.S576C	RPAP3_uc010slk.1_Missense_Mutation_p.S417C|RPAP3_uc001rps.2_Missense_Mutation_p.S542C	NM_024604	NP_078880	Q9H6T3	RPAP3_HUMAN	RNA polymerase II associated protein 3 isoform	576							binding			ovary(1)	1	Lung SC(27;0.192)					AGGATACAAAGATGGTTCAAT	0.294		NaN											0	0	0	0.000442599	0	9	40									
MLL2	8085	broad.mit.edu	37	12	49420060	49420060	+	Missense_Mutation	SNP	C	C	A			TCGA-DK-A2I1-01A-11D-A17V-08	TCGA-DK-A2I1-10A-01D-A17V-08			C	A	C	C		Valid	Somatic	Phase_I	WXS	Fluidigm			Illumina GAIIx	f350676a-e308-42fe-8297-9d18ba7027b1	bba7b385-f707-4654-ba9e-cd3bbebf4859	g.chr12:49420060C>A	uc001rta.3	-	48	15689	c.15689G>T	c.(15688-15690)TGT>TTT	p.C5230F		NM_003482	NP_003473	O14686	MLL2_HUMAN	myeloid/lymphoid or mixed-lineage leukemia 2	5230	FYR N-terminal.				chromatin silencing|histone H3-K4 methylation|oocyte growth|positive regulation of cell proliferation|positive regulation of estrogen receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter|response to estrogen stimulus|transcription, DNA-dependent	histone methyltransferase complex	histone-lysine N-methyltransferase activity|protein binding|transcription regulatory region DNA binding|zinc ion binding			kidney(16)|central_nervous_system(12)|lung(4)|skin(4)|ovary(3)|pancreas(2)	41						ACCAATAGAACAGCGATAGCA	0.582		NaN	N|F|Mis		medulloblastoma|renal					HNSCC(34;0.089)			1	0	5.8336e-16	0.00058488	9.56053e-15	33	47									
DIP2B	57609	broad.mit.edu	37	12	51074507	51074508	+	Missense_Mutation	DNP	GG	GG	TT			TCGA-DK-A2I1-01A-11D-A17V-08	TCGA-DK-A2I1-10A-01D-A17V-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f350676a-e308-42fe-8297-9d18ba7027b1	bba7b385-f707-4654-ba9e-cd3bbebf4859	g.chr12:51074507_51074508GG>TT	uc001rwv.2	+	9	1323_1324	c.1167_1168GG>TT	c.(1165-1170)CTGGGG>CTTTGG	p.G390W		NM_173602	NP_775873	Q9P265	DIP2B_HUMAN	DIP2 disco-interacting protein 2 homolog B	390						nucleus	catalytic activity|transcription factor binding			ovary(4)|breast(1)|pancreas(1)	6						TTAATAAACTGGGGACCAAAAA	0.342		NaN											0	0	0	6.4e-05	0	12	509									
CSRNP2	81566	broad.mit.edu	37	12	51467662	51467662	+	Nonsense_Mutation	SNP	G	G	A			TCGA-DK-A2I1-01A-11D-A17V-08	TCGA-DK-A2I1-10A-01D-A17V-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f350676a-e308-42fe-8297-9d18ba7027b1	bba7b385-f707-4654-ba9e-cd3bbebf4859	g.chr12:51467662G>A	uc001rxu.1	-	3	653	c.355C>T	c.(355-357)CGA>TGA	p.R119*		NM_030809	NP_110436	Q9H175	CSRN2_HUMAN	TGF-beta induced apoptosis protein 12	119					apoptosis|positive regulation of transcription from RNA polymerase II promoter	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity				0						AGAATCTCTCGATGGTTCACC	0.532		NaN											0	0	0	0.000147903	0	52	93									
KRT75	9119	broad.mit.edu	37	12	52822425	52822425	+	Missense_Mutation	SNP	C	C	T			TCGA-DK-A2I1-01A-11D-A17V-08	TCGA-DK-A2I1-10A-01D-A17V-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f350676a-e308-42fe-8297-9d18ba7027b1	bba7b385-f707-4654-ba9e-cd3bbebf4859	g.chr12:52822425C>T	uc001saj.2	-	6	1160	c.1138G>A	c.(1138-1140)GAG>AAG	p.E380K		NM_004693	NP_004684	O95678	K2C75_HUMAN	keratin 75	380	Coil 2.|Rod.					keratin filament	structural molecule activity				0				BRCA - Breast invasive adenocarcinoma(357;0.192)		CTGTCAATCTCAGCTCTCAGC	0.507		NaN											0	0	0	0.00010058	0	11	54									
KRT71	112802	broad.mit.edu	37	12	52943818	52943818	+	Missense_Mutation	SNP	C	C	G	rs140770876		TCGA-DK-A2I1-01A-11D-A17V-08	TCGA-DK-A2I1-10A-01D-A17V-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f350676a-e308-42fe-8297-9d18ba7027b1	bba7b385-f707-4654-ba9e-cd3bbebf4859	g.chr12:52943818C>G	uc001sao.2	-	2	721	c.651G>C	c.(649-651)AAG>AAC	p.K217N		NM_033448	NP_258259	Q3SY84	K2C71_HUMAN	keratin 71	217	Coil 1B.|Rod.						structural molecule activity			ovary(1)|skin(1)	2				BRCA - Breast invasive adenocarcinoma(357;0.194)		CTCACCTCTTCTTGTAGTCCT	0.592		NaN											0	0	0	0.000175454	0	19	99									
HNRNPA1	3178	broad.mit.edu	37	12	54675662	54675662	+	Missense_Mutation	SNP	G	G	A			TCGA-DK-A2I1-01A-11D-A17V-08	TCGA-DK-A2I1-10A-01D-A17V-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f350676a-e308-42fe-8297-9d18ba7027b1	bba7b385-f707-4654-ba9e-cd3bbebf4859	g.chr12:54675662G>A	uc001sfl.2	+	3	320	c.216G>A	c.(214-216)ATG>ATA	p.M72I	CBX5_uc001sfk.3_5'Flank|CBX5_uc001sfi.3_5'Flank|HNRNPA1_uc001sfm.2_Missense_Mutation_p.M72I|HNRNPA1_uc009zng.2_Missense_Mutation_p.M72I|HNRNPA1_uc009znh.2_Missense_Mutation_p.M72I|HNRNPA1_uc009zni.2_Missense_Mutation_p.M72I|HNRNPA1_uc001sfn.2_Missense_Mutation_p.M72I|HNRNPA1_uc001sfo.3_RNA|HNRNPA1_uc001sfp.1_Missense_Mutation_p.M27I|HNRNPA1_uc009znj.1_Missense_Mutation_p.M27I	NM_031157	NP_112420	P09651	ROA1_HUMAN	heterogeneous nuclear ribonucleoprotein A1	72	Globular A domain.|RRM 1.				interspecies interaction between organisms|mRNA transport|nuclear import	catalytic step 2 spliceosome|cytoplasm|heterogeneous nuclear ribonucleoprotein complex|nucleolus|nucleoplasm	nucleotide binding|protein binding|single-stranded DNA binding			skin(2)|ovary(1)	3						ATGCAGCTATGAATGCAAGGC	0.463		NaN											0	0	0	7.07596e-05	0	18	39									
ZBTB39	9880	broad.mit.edu	37	12	57397508	57397508	+	Silent	SNP	G	G	A			TCGA-DK-A2I1-01A-11D-A17V-08	TCGA-DK-A2I1-10A-01D-A17V-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f350676a-e308-42fe-8297-9d18ba7027b1	bba7b385-f707-4654-ba9e-cd3bbebf4859	g.chr12:57397508G>A	uc001sml.1	-	2	1280	c.1194C>T	c.(1192-1194)TTC>TTT	p.F398F	RDH16_uc010sqx.1_5'Flank	NM_014830	NP_055645	O15060	ZBT39_HUMAN	zinc finger and BTB domain containing 39	398					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			breast(1)	1						AGGAGAAAAGGAAAATACCAA	0.512		NaN											0	0	0	0.000491102	0	35	44									
TBK1	29110	broad.mit.edu	37	12	64868152	64868152	+	Missense_Mutation	SNP	G	G	A			TCGA-DK-A2I1-01A-11D-A17V-08	TCGA-DK-A2I1-10A-01D-A17V-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f350676a-e308-42fe-8297-9d18ba7027b1	bba7b385-f707-4654-ba9e-cd3bbebf4859	g.chr12:64868152G>A	uc001ssc.1	+	6	745	c.683G>A	c.(682-684)CGT>CAT	p.R228H		NM_013254	NP_037386	Q9UHD2	TBK1_HUMAN	TANK-binding kinase 1	228	Protein kinase.				I-kappaB kinase/NF-kappaB cascade|innate immune response|interspecies interaction between organisms|MyD88-independent toll-like receptor signaling pathway|negative regulation of type I interferon production|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of interferon-alpha production|positive regulation of interferon-beta production|positive regulation of transcription from RNA polymerase II promoter|response to virus|Toll signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	cytosol|endosome membrane|plasma membrane	ATP binding|phosphoprotein binding|protein serine/threonine kinase activity			central_nervous_system(2)|ovary(1)|large_intestine(1)|breast(1)	5				GBM - Glioblastoma multiforme(28;0.0386)		GAAGGGCCTCGTAGGAATAAA	0.383		NaN											0	0	0	0.000159656	0	35	142									
CHST11	50515	broad.mit.edu	37	12	105151419	105151419	+	Silent	SNP	G	G	A			TCGA-DK-A2I1-01A-11D-A17V-08	TCGA-DK-A2I1-10A-01D-A17V-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f350676a-e308-42fe-8297-9d18ba7027b1	bba7b385-f707-4654-ba9e-cd3bbebf4859	g.chr12:105151419G>A	uc001tkx.1	+	4	1188	c.897G>A	c.(895-897)CTG>CTA	p.L299L	CHST11_uc001tky.2_Silent_p.L294L|uc001tkz.2_5'Flank	NM_018413	NP_060883	Q9NPF2	CHSTB_HUMAN	carbohydrate sulfotransferase 11	299	Lumenal (Potential).				chondroitin sulfate biosynthetic process	Golgi membrane|integral to membrane	chondroitin 4-sulfotransferase activity|N-acetylgalactosamine 4-O-sulfotransferase activity				0						GCAGCTACCTGAAGTTCCCCA	0.512		NaN											0	0	0	3.86212e-05	0	11	37									
BTBD11	121551	broad.mit.edu	37	12	108034099	108034099	+	Missense_Mutation	SNP	C	C	G			TCGA-DK-A2I1-01A-11D-A17V-08	TCGA-DK-A2I1-10A-01D-A17V-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f350676a-e308-42fe-8297-9d18ba7027b1	bba7b385-f707-4654-ba9e-cd3bbebf4859	g.chr12:108034099C>G	uc001tmk.1	+	13	3270	c.2749C>G	c.(2749-2751)CTT>GTT	p.L917V	BTBD11_uc001tmj.2_Missense_Mutation_p.L917V|BTBD11_uc001tml.1_Missense_Mutation_p.L454V|BTBD11_uc001tmm.1_5'UTR	NM_001018072	NP_001018082	A6QL63	BTBDB_HUMAN	BTB (POZ) domain containing 11 isoform a	917						integral to membrane	DNA binding			skin(2)|ovary(1)	3						TCCTCATTTTCTTAACAATAA	0.348		NaN											0	0	0	0.000151284	0	13	75									
NCOR2	9612	broad.mit.edu	37	12	124968284	124968284	+	Nonsense_Mutation	SNP	G	G	C			TCGA-DK-A2I1-01A-11D-A17V-08	TCGA-DK-A2I1-10A-01D-A17V-08			G	C	G	G		Valid	Somatic	Phase_I	WXS	Fluidigm			Illumina GAIIx	f350676a-e308-42fe-8297-9d18ba7027b1	bba7b385-f707-4654-ba9e-cd3bbebf4859	g.chr12:124968284G>C	uc010tba.1	-	3	386	c.269C>G	c.(268-270)TCA>TGA	p.S90*	NCOR2_uc010tay.1_Nonsense_Mutation_p.S90*|NCOR2_uc010taz.1_Nonsense_Mutation_p.S90*|NCOR2_uc010tbb.1_Nonsense_Mutation_p.S90*|NCOR2_uc010tbc.1_Nonsense_Mutation_p.S90*|NCOR2_uc001ugj.1_Nonsense_Mutation_p.S90*|NCOR2_uc001ugk.1_Nonsense_Mutation_p.S90*|uc001ugl.2_RNA	NM_001077261	NP_001070729	Q9Y618	NCOR2_HUMAN	nuclear receptor co-repressor 2 isoform 2	90					cellular lipid metabolic process|negative regulation of transcription from RNA polymerase II promoter|regulation of cellular ketone metabolic process by negative regulation of transcription from an RNA polymerase II promoter|transcription, DNA-dependent	nuclear body|nucleus|transcriptional repressor complex	DNA binding|histone deacetylase binding|Notch binding|protein N-terminus binding|transcription corepressor activity			skin(3)|ovary(1)	4	all_neural(191;0.0804)|Medulloblastoma(191;0.163)			Epithelial(86;3.99e-05)|OV - Ovarian serous cystadenocarcinoma(86;9.14e-05)|all cancers(50;0.000402)|BRCA - Breast invasive adenocarcinoma(302;0.0764)		GGGCAGGTATGAGTGGGACTC	0.632		NaN											0	0	0	6.4e-05	0	2	6									
POLR1D	51082	broad.mit.edu	37	13	28239829	28239829	+	Silent	SNP	G	G	A			TCGA-DK-A2I1-01A-11D-A17V-08	TCGA-DK-A2I1-10A-01D-A17V-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f350676a-e308-42fe-8297-9d18ba7027b1	bba7b385-f707-4654-ba9e-cd3bbebf4859	g.chr13:28239829G>A	uc001urp.2	+	3	226	c.108G>A	c.(106-108)AAG>AAA	p.K36K	POLR1D_uc010aam.2_Silent_p.K8K|POLR1D_uc001urq.2_RNA	NM_152705	NP_689918	Q9Y2S0	RPAC2_HUMAN	polymerase (RNA) I polypeptide D isoform 2	Error:Variant_position_missing_in_Q9Y2S0_after_alignment					termination of RNA polymerase I transcription|transcription elongation from RNA polymerase I promoter|transcription initiation from RNA polymerase I promoter	nucleoplasm	DNA binding|DNA-directed RNA polymerase activity|protein dimerization activity				0		Lung SC(185;0.0161)	Colorectal(13;0.000157)|READ - Rectum adenocarcinoma(15;0.105)	all cancers(112;0.0758)|OV - Ovarian serous cystadenocarcinoma(117;0.1)|Epithelial(112;0.213)		CCAGGATGAAGTGTCCTCTTG	0.403		NaN											0	0	0	0.000422831	0	15	37									
USPL1	10208	broad.mit.edu	37	13	31231851	31231851	+	Missense_Mutation	SNP	C	C	T			TCGA-DK-A2I1-01A-11D-A17V-08	TCGA-DK-A2I1-10A-01D-A17V-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f350676a-e308-42fe-8297-9d18ba7027b1	bba7b385-f707-4654-ba9e-cd3bbebf4859	g.chr13:31231851C>T	uc001utc.2	+	9	2069	c.1637C>T	c.(1636-1638)TCA>TTA	p.S546L	USPL1_uc001utd.2_Missense_Mutation_p.S217L|USPL1_uc001ute.1_Missense_Mutation_p.S217L	NM_005800	NP_005791	Q5W0Q7	USPL1_HUMAN	ubiquitin specific peptidase like 1	546					ubiquitin-dependent protein catabolic process		ubiquitin thiolesterase activity			pancreas(2)|skin(1)	3		Lung SC(185;0.0257)|Breast(139;0.203)		all cancers(112;0.0306)|Epithelial(112;0.131)|OV - Ovarian serous cystadenocarcinoma(117;0.134)		GAAACAGCCTCAGTAACTCAC	0.433		NaN											0	0	0	0.00058488	0	35	118									
POSTN	10631	broad.mit.edu	37	13	38158988	38158988	+	Missense_Mutation	SNP	C	C	G			TCGA-DK-A2I1-01A-11D-A17V-08	TCGA-DK-A2I1-10A-01D-A17V-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f350676a-e308-42fe-8297-9d18ba7027b1	bba7b385-f707-4654-ba9e-cd3bbebf4859	g.chr13:38158988C>G	uc001uwo.3	-	8	1091	c.973G>C	c.(973-975)GAA>CAA	p.E325Q	POSTN_uc001uwp.3_Missense_Mutation_p.E325Q|POSTN_uc001uwr.2_Missense_Mutation_p.E325Q|POSTN_uc001uwq.2_Missense_Mutation_p.E325Q|POSTN_uc010teu.1_Missense_Mutation_p.E325Q|POSTN_uc010tev.1_Missense_Mutation_p.E325Q|POSTN_uc010tew.1_Missense_Mutation_p.E325Q|POSTN_uc010tex.1_Missense_Mutation_p.E240Q	NM_006475	NP_006466	Q15063	POSTN_HUMAN	periostin, osteoblast specific factor isoform 1	325	FAS1 2.				cell adhesion|skeletal system development	proteinaceous extracellular matrix	heparin binding			ovary(2)	2		Lung NSC(96;2.09e-05)|Prostate(109;0.0513)|Breast(139;0.0538)|Lung SC(185;0.0743)		all cancers(112;2.48e-08)|Epithelial(112;2.78e-06)|OV - Ovarian serous cystadenocarcinoma(117;0.000853)|BRCA - Breast invasive adenocarcinoma(63;0.013)|GBM - Glioblastoma multiforme(144;0.0154)		GTATTTCCTTCCAGCGTCTCA	0.378		NaN											0	0	0	0.000151284	0	12	76									
DGKH	160851	broad.mit.edu	37	13	42742882	42742882	+	Missense_Mutation	SNP	C	C	T			TCGA-DK-A2I1-01A-11D-A17V-08	TCGA-DK-A2I1-10A-01D-A17V-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f350676a-e308-42fe-8297-9d18ba7027b1	bba7b385-f707-4654-ba9e-cd3bbebf4859	g.chr13:42742882C>T	uc001uyl.1	+	11	1316	c.1295C>T	c.(1294-1296)TCA>TTA	p.S432L	DGKH_uc010tfh.1_Missense_Mutation_p.S432L|DGKH_uc001uym.1_Missense_Mutation_p.S432L|DGKH_uc010tfi.1_Missense_Mutation_p.S187L|DGKH_uc010tfj.1_Missense_Mutation_p.S287L|DGKH_uc001uyn.1_RNA|DGKH_uc001uyo.1_Missense_Mutation_p.S287L|DGKH_uc001uyp.2_RNA	NM_178009	NP_821077	Q86XP1	DGKH_HUMAN	diacylglycerol kinase, eta isoform 2	432	DAGKc.				activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|intracellular signal transduction|platelet activation|protein oligomerization	endosome|plasma membrane	ATP binding|diacylglycerol kinase activity|metal ion binding			ovary(2)	2		Lung NSC(96;1.02e-05)|Prostate(109;0.0168)|Lung SC(185;0.0262)|Breast(139;0.0709)|Hepatocellular(98;0.114)		OV - Ovarian serous cystadenocarcinoma(117;5.88e-05)|GBM - Glioblastoma multiforme(144;0.000935)|BRCA - Breast invasive adenocarcinoma(63;0.109)		TGGGGAGGTTCATATGACGAT	0.468		NaN											0	0	0	0.000339439	0	30	116									
PCDH9	5101	broad.mit.edu	37	13	67799716	67799716	+	Missense_Mutation	SNP	C	C	T			TCGA-DK-A2I1-01A-11D-A17V-08	TCGA-DK-A2I1-10A-01D-A17V-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f350676a-e308-42fe-8297-9d18ba7027b1	bba7b385-f707-4654-ba9e-cd3bbebf4859	g.chr13:67799716C>T	uc001vik.2	-	2	3549	c.2857G>A	c.(2857-2859)GAC>AAC	p.D953N	PCDH9_uc001vil.2_Missense_Mutation_p.D953N|PCDH9_uc010thl.1_Missense_Mutation_p.D953N|PCDH9_uc001vin.3_Missense_Mutation_p.D953N	NM_203487	NP_982354	Q9HC56	PCDH9_HUMAN	protocadherin 9 isoform 1 precursor	953	Cytoplasmic (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|pancreas(1)|skin(1)	6		Hepatocellular(98;0.0906)|Breast(118;0.107)		GBM - Glioblastoma multiforme(99;0.00819)		ACTGGAGTGTCTGGTTTGAGA	0.512		NaN											0	0	0	0.000270559	0	37	134									
COL4A1	1282	broad.mit.edu	37	13	110864269	110864270	+	Splice_Site	DNP	CC	CC	AA			TCGA-DK-A2I1-01A-11D-A17V-08	TCGA-DK-A2I1-10A-01D-A17V-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f350676a-e308-42fe-8297-9d18ba7027b1	bba7b385-f707-4654-ba9e-cd3bbebf4859	g.chr13:110864269_110864270CC>AA	uc001vqw.3	-	7	510	c.388_splice	c.e7-1	p.G130_splice	COL4A1_uc010agl.2_Splice_Site_p.G130_splice	NM_001845	NP_001836	P02462	CO4A1_HUMAN	alpha 1 type IV collagen preproprotein						angiogenesis|axon guidance		extracellular matrix structural constituent|platelet-derived growth factor binding			ovary(3)|lung(1)|central_nervous_system(1)|pancreas(1)	6	all_cancers(4;9.8e-13)|all_epithelial(4;9.66e-08)|all_lung(23;3.75e-06)|Lung NSC(43;0.000274)|Colorectal(4;0.00178)|all_neural(89;0.00459)|Medulloblastoma(90;0.00596)|Lung SC(71;0.0604)	Breast(118;0.2)	BRCA - Breast invasive adenocarcinoma(86;0.11)|all cancers(43;0.145)			CCTCTCTCCCCCTGGGGAGACA	0.53		NaN											0	0	0	6.4e-05	0	10	200									
SOX1	6656	broad.mit.edu	37	13	112722232	112722232	+	Missense_Mutation	SNP	C	C	A			TCGA-DK-A2I1-01A-11D-A17V-08	TCGA-DK-A2I1-10A-01D-A17V-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f350676a-e308-42fe-8297-9d18ba7027b1	bba7b385-f707-4654-ba9e-cd3bbebf4859	g.chr13:112722232C>A	uc001vsb.1	+	1	320	c.260C>A	c.(259-261)GCC>GAC	p.A87D		NM_005986	NP_005977	O00570	SOX1_HUMAN	SRY (sex determining region Y)-box 1	87	HMG box.				chromatin organization	nucleus	core promoter sequence-specific DNA binding|protein binding|sequence-specific DNA binding transcription factor activity				0	all_lung(23;0.000652)|Lung NSC(43;0.017)|Lung SC(71;0.0753)|all_neural(89;0.0804)|Medulloblastoma(90;0.163)	all_cancers(25;0.000331)|Lung NSC(25;0.0496)|all_lung(25;0.0831)|all_epithelial(44;0.0868)|Breast(118;0.231)		OV - Ovarian serous cystadenocarcinoma(48;0.132)		CGCCTGGGGGCCGAGTGGAAG	0.642		NaN											1	0	1.26484e-09	0.000157383	2.019e-08	6	27									
RPGRIP1	57096	broad.mit.edu	37	14	21780097	21780097	+	Missense_Mutation	SNP	G	G	A			TCGA-DK-A2I1-01A-11D-A17V-08	TCGA-DK-A2I1-10A-01D-A17V-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f350676a-e308-42fe-8297-9d18ba7027b1	bba7b385-f707-4654-ba9e-cd3bbebf4859	g.chr14:21780097G>A	uc001wag.2	+	8	1045	c.1045G>A	c.(1045-1047)GAT>AAT	p.D349N		NM_020366	NP_065099	Q96KN7	RPGR1_HUMAN	retinitis pigmentosa GTPase regulator	349	Potential.				response to stimulus|visual perception	cilium				ovary(4)|breast(2)|pancreas(1)	7	all_cancers(95;0.0017)	all_cancers(140;0.0973)	Epithelial(56;6.24e-07)|all cancers(55;6.56e-06)	GBM - Glioblastoma multiforme(265;0.00888)		CCAACTGGAAGATGTGTCTAT	0.443		NaN											0	0	0	0.000157383	0	7	14									
MYH7	4625	broad.mit.edu	37	14	23884264	23884264	+	Silent	SNP	G	G	A	rs3729831		TCGA-DK-A2I1-01A-11D-A17V-08	TCGA-DK-A2I1-10A-01D-A17V-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f350676a-e308-42fe-8297-9d18ba7027b1	bba7b385-f707-4654-ba9e-cd3bbebf4859	g.chr14:23884264G>A	uc001wjx.2	-	37	5605	c.5499C>T	c.(5497-5499)AAC>AAT	p.N1833N		NM_000257	NP_000248	P12883	MYH7_HUMAN	myosin, heavy chain 7, cardiac muscle, beta	1833	Potential.				adult heart development|muscle filament sliding|regulation of heart rate|ventricular cardiac muscle tissue morphogenesis	focal adhesion|muscle myosin complex|myosin filament|nucleus|sarcomere	actin binding|actin-dependent ATPase activity|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle			ovary(3)|skin(1)	4	all_cancers(95;2.54e-05)			GBM - Glioblastoma multiforme(265;0.00725)		CCGACTCTGCGTTGCGCTTCT	0.652		NaN											0	0	0	0.000147903	0	76	50									
ARHGAP5	394	broad.mit.edu	37	14	32562188	32562188	+	Silent	SNP	G	G	A			TCGA-DK-A2I1-01A-11D-A17V-08	TCGA-DK-A2I1-10A-01D-A17V-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f350676a-e308-42fe-8297-9d18ba7027b1	bba7b385-f707-4654-ba9e-cd3bbebf4859	g.chr14:32562188G>A	uc001wrl.2	+	2	2552	c.2313G>A	c.(2311-2313)AAG>AAA	p.K771K	ARHGAP5_uc001wrm.2_Silent_p.K771K|ARHGAP5_uc001wrn.2_Silent_p.K771K|ARHGAP5_uc001wro.2_Intron|ARHGAP5_uc001wrp.2_Intron	NM_001173	NP_001025226	Q13017	RHG05_HUMAN	Rho GTPase activating protein 5 isoform b	771					cell adhesion|Rho protein signal transduction	cytosol|membrane	GTP binding|GTPase activity|Rho GTPase activator activity|SH2 domain binding			ovary(4)|central_nervous_system(1)	5	Hepatocellular(127;0.0604)|Prostate(35;0.15)|Breast(36;0.186)		LUAD - Lung adenocarcinoma(48;0.00192)|Lung(238;0.00714)|BRCA - Breast invasive adenocarcinoma(188;0.0952)|STAD - Stomach adenocarcinoma(7;0.173)	GBM - Glioblastoma multiforme(265;0.00566)		CTGCCAATAAGGACTTATCAG	0.398		NaN											0	0	0	0.000132079	0	18	71									
RALGAPA1	253959	broad.mit.edu	37	14	36147182	36147182	+	Missense_Mutation	SNP	G	G	C			TCGA-DK-A2I1-01A-11D-A17V-08	TCGA-DK-A2I1-10A-01D-A17V-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f350676a-e308-42fe-8297-9d18ba7027b1	bba7b385-f707-4654-ba9e-cd3bbebf4859	g.chr14:36147182G>C	uc001wti.2	-	21	3471	c.3080C>G	c.(3079-3081)TCT>TGT	p.S1027C	RALGAPA1_uc001wtj.2_Missense_Mutation_p.S1027C|RALGAPA1_uc010tpv.1_Missense_Mutation_p.S1040C|RALGAPA1_uc010tpw.1_Missense_Mutation_p.S1074C|RALGAPA1_uc001wtk.1_Missense_Mutation_p.S925C	NM_014990	NP_055805	Q6GYQ0	RGPA1_HUMAN	Ral GTPase activating protein, alpha subunit 1	1027					activation of Ral GTPase activity	cytosol|mitochondrion|nucleus	protein heterodimerization activity|Ral GTPase activator activity			ovary(3)|breast(1)	4						CTGAAGAACAGAGTGGTGGAG	0.433		NaN											0	0	0	7.07596e-05	0	15	37									
RALGAPA1	253959	broad.mit.edu	37	14	36219784	36219784	+	Silent	SNP	G	G	A			TCGA-DK-A2I1-01A-11D-A17V-08	TCGA-DK-A2I1-10A-01D-A17V-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f350676a-e308-42fe-8297-9d18ba7027b1	bba7b385-f707-4654-ba9e-cd3bbebf4859	g.chr14:36219784G>A	uc001wti.2	-	9	1306	c.915C>T	c.(913-915)GTC>GTT	p.V305V	RALGAPA1_uc001wtj.2_Silent_p.V305V|RALGAPA1_uc010tpv.1_Silent_p.V305V|RALGAPA1_uc010tpw.1_Silent_p.V305V|RALGAPA1_uc001wtk.1_Silent_p.V156V	NM_014990	NP_055805	Q6GYQ0	RGPA1_HUMAN	Ral GTPase activating protein, alpha subunit 1	305					activation of Ral GTPase activity	cytosol|mitochondrion|nucleus	protein heterodimerization activity|Ral GTPase activator activity			ovary(3)|breast(1)	4						GCCAACGAATGACAATAACAC	0.418		NaN											0	0	0	0.000219431	0	12	24									
RPL10L	140801	broad.mit.edu	37	14	47120421	47120421	+	Silent	SNP	G	G	A			TCGA-DK-A2I1-01A-11D-A17V-08	TCGA-DK-A2I1-10A-01D-A17V-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f350676a-e308-42fe-8297-9d18ba7027b1	bba7b385-f707-4654-ba9e-cd3bbebf4859	g.chr14:47120421G>A	uc001wwg.2	-	1	608	c.519C>T	c.(517-519)TTC>TTT	p.F173F		NM_080746	NP_542784	Q96L21	RL10L_HUMAN	ribosomal protein L10-like protein	173					spermatogenesis|translation	cytosolic large ribosomal subunit|nucleus	structural constituent of ribosome			ovary(1)	1						TAAACTTCGTGAAGCCCCACT	0.512		NaN											0	0	0	0.000147903	0	59	58									
C14orf101	54916	broad.mit.edu	37	14	57099827	57099827	+	Missense_Mutation	SNP	C	C	G			TCGA-DK-A2I1-01A-11D-A17V-08	TCGA-DK-A2I1-10A-01D-A17V-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f350676a-e308-42fe-8297-9d18ba7027b1	bba7b385-f707-4654-ba9e-cd3bbebf4859	g.chr14:57099827C>G	uc001xcm.2	+	13	1784	c.1662C>G	c.(1660-1662)TTC>TTG	p.F554L	C14orf101_uc001xcj.2_RNA|C14orf101_uc001xcl.1_RNA|C14orf101_uc001xcn.2_RNA|C14orf101_uc010trf.1_Missense_Mutation_p.F87L|C14orf101_uc001xco.2_Missense_Mutation_p.F87L	NM_017799	NP_060269	Q9NX78	CN101_HUMAN	hypothetical protein LOC54916	554						integral to membrane				breast(1)|central_nervous_system(1)	2				OV - Ovarian serous cystadenocarcinoma(311;0.226)		AGATTGTATTCAACCCTGAGG	0.373		NaN											0	0	0	0.000374591	0	42	24									
FMN1	342184	broad.mit.edu	37	15	33192256	33192257	+	Missense_Mutation	DNP	CC	CC	AA			TCGA-DK-A2I1-01A-11D-A17V-08	TCGA-DK-A2I1-10A-01D-A17V-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f350676a-e308-42fe-8297-9d18ba7027b1	bba7b385-f707-4654-ba9e-cd3bbebf4859	g.chr15:33192256_33192257CC>AA	uc001zhf.3	-	10	2908_2909	c.2908_2909GG>TT	c.(2908-2910)GGA>TTA	p.G970L		NM_001103184	NP_001096654	Q68DA7	FMN1_HUMAN	formin 1	1193	FH2.				actin cytoskeleton organization	actin cytoskeleton|adherens junction|cytoplasm|nucleus	actin binding			ovary(1)	1		all_lung(180;1.14e-07)		all cancers(64;3.05e-15)|Epithelial(43;1.67e-10)|GBM - Glioblastoma multiforme(186;4.95e-05)|BRCA - Breast invasive adenocarcinoma(123;0.0262)		CCTATTTCCTCCATTCATATAA	0.411		NaN											0	0	0	6.4e-05	0	10	287									
RTF1	23168	broad.mit.edu	37	15	41749923	41749923	+	Missense_Mutation	SNP	T	T	A			TCGA-DK-A2I1-01A-11D-A17V-08	TCGA-DK-A2I1-10A-01D-A17V-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f350676a-e308-42fe-8297-9d18ba7027b1	bba7b385-f707-4654-ba9e-cd3bbebf4859	g.chr15:41749923T>A	uc001zny.2	+	4	523	c.511T>A	c.(511-513)TCT>ACT	p.S171T		NM_015138	NP_055953	Q92541	RTF1_HUMAN	Paf1/RNA polymerase II complex component	171	Ser-rich.				histone modification|regulation of transcription, DNA-dependent|transcription initiation, DNA-dependent	nucleoplasm	protein binding|single-stranded DNA binding			ovary(2)	2		all_cancers(109;1.79e-19)|all_epithelial(112;8.18e-17)|Lung NSC(122;3.16e-11)|all_lung(180;8.14e-10)|Melanoma(134;0.0179)|Colorectal(260;0.0946)|Ovarian(310;0.143)		OV - Ovarian serous cystadenocarcinoma(18;1.15e-16)|GBM - Glioblastoma multiforme(113;1.81e-06)|BRCA - Breast invasive adenocarcinoma(123;0.119)		AGATTCAGACTCTTCCTCAGA	0.478		NaN											0	0	0	0.000319135	0	41	153									
CDAN1	146059	broad.mit.edu	37	15	43026452	43026452	+	Missense_Mutation	SNP	C	C	T			TCGA-DK-A2I1-01A-11D-A17V-08	TCGA-DK-A2I1-10A-01D-A17V-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f350676a-e308-42fe-8297-9d18ba7027b1	bba7b385-f707-4654-ba9e-cd3bbebf4859	g.chr15:43026452C>T	uc001zql.2	-	7	1346	c.1229G>A	c.(1228-1230)CGA>CAA	p.R410Q	CDAN1_uc001zqk.2_5'UTR|CDAN1_uc010bcx.1_Intron	NM_138477	NP_612486	Q8IWY9	CDAN1_HUMAN	codanin 1	410						integral to membrane	protein binding			ovary(2)	2		all_cancers(109;5.4e-16)|all_epithelial(112;2.97e-14)|Lung NSC(122;1.75e-08)|all_lung(180;5.99e-08)|Melanoma(134;0.0179)|Colorectal(260;0.215)		GBM - Glioblastoma multiforme(94;2.49e-07)		ATAGGCAGCTCGAAGGCGGCC	0.557		NaN											0	0	0	0.000175454	0	20	57									
UBR1	197131	broad.mit.edu	37	15	43360220	43360220	+	Missense_Mutation	SNP	C	C	G			TCGA-DK-A2I1-01A-11D-A17V-08	TCGA-DK-A2I1-10A-01D-A17V-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f350676a-e308-42fe-8297-9d18ba7027b1	bba7b385-f707-4654-ba9e-cd3bbebf4859	g.chr15:43360220C>G	uc001zqq.2	-	6	740	c.674G>C	c.(673-675)AGA>ACA	p.R225T	UBR1_uc010udk.1_Missense_Mutation_p.R225T	NM_174916	NP_777576	Q8IWV7	UBR1_HUMAN	ubiquitin protein ligase E3 component n-recognin	225					cellular response to leucine|negative regulation of TOR signaling cascade	cytosol	leucine binding|zinc ion binding			lung(1)	1		all_cancers(109;4.32e-15)|all_epithelial(112;4.05e-13)|Lung NSC(122;1.75e-08)|all_lung(180;2e-07)|Melanoma(134;0.0179)|Colorectal(260;0.215)		GBM - Glioblastoma multiforme(94;4.08e-07)|COAD - Colon adenocarcinoma(120;0.185)|Colorectal(105;0.214)		ACAATAGTATCTTTCATTTTT	0.289		NaN											0	0	0	0.000184323	0	23	93									
DYX1C1	161582	broad.mit.edu	37	15	55790518	55790518	+	Nonsense_Mutation	SNP	G	G	A			TCGA-DK-A2I1-01A-11D-A17V-08	TCGA-DK-A2I1-10A-01D-A17V-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f350676a-e308-42fe-8297-9d18ba7027b1	bba7b385-f707-4654-ba9e-cd3bbebf4859	g.chr15:55790518G>A	uc002adc.2	-	2	378	c.10C>T	c.(10-12)CAG>TAG	p.Q4*	CCPG1_uc002acy.2_5'UTR|DYX1C1_uc010ugh.1_RNA|DYX1C1_uc010ugi.1_RNA|DYX1C1_uc002adb.2_Nonsense_Mutation_p.Q4*|DYX1C1_uc002add.2_Nonsense_Mutation_p.Q4*	NM_130810	NP_570722	Q8WXU2	DYXC1_HUMAN	dyslexia susceptibility 1 candidate 1 isoform a	4	CS.				neuron migration|regulation of estrogen receptor signaling pathway|regulation of proteasomal protein catabolic process	cytoplasm|nucleus	estrogen receptor binding			skin(1)	1				all cancers(107;0.0118)|GBM - Glioblastoma multiforme(80;0.171)		TCGCTAACCTGAAGAGGCATT	0.592		NaN											0	0	0	0.000602214	0	5	22									
CCPG1	9236	broad.mit.edu	37	15	55790547	55790547	+	Translation_Start_Site	SNP	G	G	C			TCGA-DK-A2I1-01A-11D-A17V-08	TCGA-DK-A2I1-10A-01D-A17V-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f350676a-e308-42fe-8297-9d18ba7027b1	bba7b385-f707-4654-ba9e-cd3bbebf4859	g.chr15:55790547G>C	uc002acy.2	-	1	236	c.-1181C>G	c.(-1183--1179)ATCCG>ATGCG		DYX1C1_uc010ugh.1_RNA|DYX1C1_uc010ugi.1_RNA|DYX1C1_uc002adb.2_Translation_Start_Site|DYX1C1_uc002adc.2_Translation_Start_Site|DYX1C1_uc002add.2_Translation_Start_Site	NM_020739	NP_065790	Q9ULG6	CCPG1_HUMAN	cell cycle progression 1 isoform 2						cell cycle	integral to membrane				ovary(1)	1				all cancers(107;0.0354)		AACGGGAGCGGATAGCGCGGC	0.632		NaN											0	0	0	6.4e-05	0	3	20									
ADAM10	102	broad.mit.edu	37	15	58919991	58919991	+	Missense_Mutation	SNP	G	G	A			TCGA-DK-A2I1-01A-11D-A17V-08	TCGA-DK-A2I1-10A-01D-A17V-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f350676a-e308-42fe-8297-9d18ba7027b1	bba7b385-f707-4654-ba9e-cd3bbebf4859	g.chr15:58919991G>A	uc002afd.1	-	10	1712	c.1268C>T	c.(1267-1269)TCT>TTT	p.S423F	ADAM10_uc010bgc.1_RNA|ADAM10_uc010ugz.1_Missense_Mutation_p.S122F|ADAM10_uc002afe.1_Intron	NM_001110	NP_001101	O14672	ADA10_HUMAN	ADAM metallopeptidase domain 10 precursor	423	Peptidase M12B.|Extracellular (Potential).				cell-cell signaling|constitutive protein ectodomain proteolysis|epidermal growth factor receptor signaling pathway|in utero embryonic development|integrin-mediated signaling pathway|monocyte activation|negative regulation of cell adhesion|Notch receptor processing|Notch signaling pathway|PMA-inducible membrane protein ectodomain proteolysis|positive regulation of cell growth|positive regulation of cell proliferation|positive regulation of T cell chemotaxis|protein phosphorylation|response to tumor necrosis factor	cell surface|endomembrane system|Golgi-associated vesicle|integral to membrane|nucleus|plasma membrane	integrin binding|metalloendopeptidase activity|protein homodimerization activity|protein kinase binding|SH3 domain binding|zinc ion binding			skin(2)	2				GBM - Glioblastoma multiforme(80;0.202)		TTTGTCCCCAGATGTTGCTCT	0.353		NaN											0	0	0	0.000295444	0	22	66									
PIF1	80119	broad.mit.edu	37	15	65114716	65114716	+	Missense_Mutation	SNP	C	C	T			TCGA-DK-A2I1-01A-11D-A17V-08	TCGA-DK-A2I1-10A-01D-A17V-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f350676a-e308-42fe-8297-9d18ba7027b1	bba7b385-f707-4654-ba9e-cd3bbebf4859	g.chr15:65114716C>T	uc002ant.2	-	3	718	c.652G>A	c.(652-654)GTC>ATC	p.V218I	PIF1_uc002anr.2_5'Flank|PIF1_uc002ans.2_5'Flank|PIF1_uc010uiq.1_Missense_Mutation_p.V218I|PIF1_uc002anu.2_Missense_Mutation_p.V218I	NM_025049	NP_079325	Q9H611	PIF1_HUMAN	DNA helicase homolog PIF1	218	Hydrolyzes ATP in the presence of both magnesium and single-stranded DNA; weak activity in the presence of RNA or double-stranded DNA; No unwinding activity.				negative regulation of telomerase activity|regulation of telomere maintenance|viral genome replication	nuclear chromosome, telomeric region	ATP binding|ATP-dependent 5'-3' DNA helicase activity|ATP-dependent 5'-3' DNA/RNA helicase activity|magnesium ion binding|single-stranded DNA-dependent ATP-dependent DNA helicase activity|telomeric DNA binding				0						CCTTTCAGGACGGCCCTCAGC	0.622		NaN											0	0	0	0.00010058	0	11	30									
LCTL	197021	broad.mit.edu	37	15	66845521	66845521	+	Missense_Mutation	SNP	T	T	G			TCGA-DK-A2I1-01A-11D-A17V-08	TCGA-DK-A2I1-10A-01D-A17V-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f350676a-e308-42fe-8297-9d18ba7027b1	bba7b385-f707-4654-ba9e-cd3bbebf4859	g.chr15:66845521T>G	uc002aqc.2	-	9	1130	c.998A>C	c.(997-999)AAA>ACA	p.K333T	LCTL_uc002aqd.3_Missense_Mutation_p.K160T|LCTL_uc010bhw.2_Missense_Mutation_p.K31T	NM_207338	NP_997221	Q6UWM7	LCTL_HUMAN	lactase-like precursor	333	Extracellular (Potential).				carbohydrate metabolic process	endoplasmic reticulum membrane|integral to membrane	cation binding|hydrolase activity, hydrolyzing O-glycosyl compounds			ovary(2)	2						GGATGTGCCTTTAATGTAGCT	0.488		NaN											0	0	0	0.000147903	0	51	200									
LINGO1	84894	broad.mit.edu	37	15	77907318	77907318	+	Missense_Mutation	SNP	G	G	T			TCGA-DK-A2I1-01A-11D-A17V-08	TCGA-DK-A2I1-10A-01D-A17V-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f350676a-e308-42fe-8297-9d18ba7027b1	bba7b385-f707-4654-ba9e-cd3bbebf4859	g.chr15:77907318G>T	uc002bct.1	-	2	983	c.931C>A	c.(931-933)CTC>ATC	p.L311I	LINGO1_uc002bcu.1_Missense_Mutation_p.L305I	NM_032808	NP_116197	Q96FE5	LIGO1_HUMAN	leucine-rich repeat neuronal 6A	311	Extracellular (Potential).				negative regulation of axonogenesis|nerve growth factor receptor signaling pathway	integral to membrane|plasma membrane				ovary(1)|lung(1)	2						TGCAGCCGGAGCAGCTCATGC	0.627		NaN											1	0	0.000219431	0.000219431	0.00335712	15	69									
C15orf42	90381	broad.mit.edu	37	15	90169198	90169198	+	Silent	SNP	G	G	C			TCGA-DK-A2I1-01A-11D-A17V-08	TCGA-DK-A2I1-10A-01D-A17V-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f350676a-e308-42fe-8297-9d18ba7027b1	bba7b385-f707-4654-ba9e-cd3bbebf4859	g.chr15:90169198G>C	uc002boe.2	+	21	5508	c.5508G>C	c.(5506-5508)CGG>CGC	p.R1836R	C15orf42_uc010upv.1_RNA	NM_152259	NP_689472	Q7Z2Z1	TICRR_HUMAN	leucine-rich repeat kinase 1	1836					cell cycle|DNA repair|DNA replication|formation of translation preinitiation complex|G2/M transition checkpoint|mitotic cell cycle DNA replication checkpoint|regulation of DNA-dependent DNA replication initiation|response to ionizing radiation	nucleus	chromatin binding|protein binding			ovary(4)|central_nervous_system(2)|skin(1)	7	Lung NSC(78;0.0237)|all_lung(78;0.0478)		BRCA - Breast invasive adenocarcinoma(143;0.128)			GTGCCGTGCGGAGCTGCCTCT	0.617		NaN											0	0	0	0.000422831	0	16	32									
MLST8	64223	broad.mit.edu	37	16	2256193	2256193	+	Missense_Mutation	SNP	G	G	A			TCGA-DK-A2I1-01A-11D-A17V-08	TCGA-DK-A2I1-10A-01D-A17V-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f350676a-e308-42fe-8297-9d18ba7027b1	bba7b385-f707-4654-ba9e-cd3bbebf4859	g.chr16:2256193G>A	uc002coz.2	+	2	226	c.107G>A	c.(106-108)CGG>CAG	p.R36Q	MLST8_uc002coy.2_Missense_Mutation_p.R36Q|MLST8_uc002cpa.2_5'UTR|MLST8_uc002cpb.2_Missense_Mutation_p.R36Q|MLST8_uc010uvx.1_5'UTR|MLST8_uc002cpc.2_Missense_Mutation_p.R36Q|MLST8_uc002cpd.2_5'UTR|MLST8_uc002cpe.2_Missense_Mutation_p.R36Q|MLST8_uc010uvy.1_Missense_Mutation_p.R36Q|MLST8_uc002cpg.2_Missense_Mutation_p.R55Q|MLST8_uc002cph.2_RNA|MLST8_uc002cpf.2_Missense_Mutation_p.R36Q	NM_022372	NP_071767	Q9BVC4	LST8_HUMAN	G protein beta subunit-like	36	WD 1.				insulin receptor signaling pathway|nerve growth factor receptor signaling pathway|phosphatidylinositol-mediated signaling|positive regulation of TOR signaling cascade|T cell costimulation	cytosol	protein binding				0						ATCTGCACCCGGACGGTGCAG	0.701		NaN											0	0	0	0.000422831	0	16	46									
CCNF	899	broad.mit.edu	37	16	2485829	2485829	+	Missense_Mutation	SNP	G	G	A			TCGA-DK-A2I1-01A-11D-A17V-08	TCGA-DK-A2I1-10A-01D-A17V-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f350676a-e308-42fe-8297-9d18ba7027b1	bba7b385-f707-4654-ba9e-cd3bbebf4859	g.chr16:2485829G>A	uc002cqd.1	+	4	389	c.301G>A	c.(301-303)GAA>AAA	p.E101K	CCNF_uc002cqe.1_5'UTR	NM_001761	NP_001752	P41002	CCNF_HUMAN	cyclin F	101					cell division|mitosis|negative regulation of centrosome duplication|protein ubiquitination|SCF-dependent proteasomal ubiquitin-dependent protein catabolic process	centriole|nucleus|SCF ubiquitin ligase complex	protein binding			central_nervous_system(1)|kidney(1)	2		Ovarian(90;0.17)				GGGGAATTTCGAAGCTGCTGT	0.458		NaN											0	0	0	0.000308642	0	16	47									
CREBBP	1387	broad.mit.edu	37	16	3828129	3828129	+	Missense_Mutation	SNP	C	C	G			TCGA-DK-A2I1-01A-11D-A17V-08	TCGA-DK-A2I1-10A-01D-A17V-08			C	G	C	C		Valid	Somatic	Phase_I	WXS	Fluidigm;RNASeq			Illumina GAIIx	f350676a-e308-42fe-8297-9d18ba7027b1	bba7b385-f707-4654-ba9e-cd3bbebf4859	g.chr16:3828129C>G	uc002cvv.2	-	10	2200	c.1996G>C	c.(1996-1998)GAA>CAA	p.E666Q	CREBBP_uc002cvw.2_Missense_Mutation_p.E628Q	NM_004380	NP_004371	Q92793	CBP_HUMAN	CREB binding protein isoform a	666	KIX.				cellular lipid metabolic process|homeostatic process|interspecies interaction between organisms|N-terminal peptidyl-lysine acetylation|protein complex assembly|response to hypoxia	cytoplasm|nuclear body	histone acetyltransferase activity|MyoD binding|p53 binding|sequence-specific DNA binding transcription factor activity|signal transducer activity|transcription coactivator activity|zinc ion binding			haematopoietic_and_lymphoid_tissue(97)|ovary(14)|lung(6)|skin(6)|breast(2)|NS(1)|pancreas(1)	127		Ovarian(90;0.0266)		OV - Ovarian serous cystadenocarcinoma(1;3.54e-05)		CGTTTTTCTTCTAGTTCTTTT	0.403		NaN	T|N|F|Mis|O	MLL|MORF|RUNXBP2	ALL|AML|DLBCL|B-NHL 		Rubinstein-Taybi syndrome		Rubinstein-Taybi_syndrome				0	0	0	0.000147903	0	104	64									
KIAA0430	9665	broad.mit.edu	37	16	15727580	15727580	+	Missense_Mutation	SNP	C	C	G			TCGA-DK-A2I1-01A-11D-A17V-08	TCGA-DK-A2I1-10A-01D-A17V-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f350676a-e308-42fe-8297-9d18ba7027b1	bba7b385-f707-4654-ba9e-cd3bbebf4859	g.chr16:15727580C>G	uc002ddr.2	-	5	1320	c.1127G>C	c.(1126-1128)AGA>ACA	p.R376T	KIAA0430_uc002ddq.2_Missense_Mutation_p.R375T|KIAA0430_uc010uzv.1_Missense_Mutation_p.R372T|KIAA0430_uc010uzw.1_Missense_Mutation_p.R375T	NM_014647	NP_055462	Q9Y4F3	LKAP_HUMAN	limkain b1	375						peroxisome	nucleotide binding|RNA binding				0						CTCACGGATTCTTTGCACAAC	0.428		NaN											0	0	0	0.000147903	0	50	196									
GGA2	23062	broad.mit.edu	37	16	23491968	23491968	+	Missense_Mutation	SNP	C	C	G			TCGA-DK-A2I1-01A-11D-A17V-08	TCGA-DK-A2I1-10A-01D-A17V-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f350676a-e308-42fe-8297-9d18ba7027b1	bba7b385-f707-4654-ba9e-cd3bbebf4859	g.chr16:23491968C>G	uc002dlq.2	-	10	1080	c.1004G>C	c.(1003-1005)AGA>ACA	p.R335T	GGA2_uc010bxo.1_RNA	NM_015044	NP_055859	Q9UJY4	GGA2_HUMAN	ADP-ribosylation factor binding protein 2	335	Unstructured hinge.				intracellular protein transport|vesicle-mediated transport	clathrin adaptor complex|clathrin-coated vesicle|endosome membrane|trans-Golgi network	ADP-ribosylation factor binding			ovary(1)|central_nervous_system(1)	2				GBM - Glioblastoma multiforme(48;0.0386)		AAACATACCTCTGGAGACAGG	0.498		NaN											0	0	0	0.000147802	0	29	24									
ITGAL	3683	broad.mit.edu	37	16	30510399	30510399	+	Missense_Mutation	SNP	C	C	T			TCGA-DK-A2I1-01A-11D-A17V-08	TCGA-DK-A2I1-10A-01D-A17V-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f350676a-e308-42fe-8297-9d18ba7027b1	bba7b385-f707-4654-ba9e-cd3bbebf4859	g.chr16:30510399C>T	uc002dyi.3	+	16	2013	c.1837C>T	c.(1837-1839)CGG>TGG	p.R613W	ITGAL_uc002dyj.3_Missense_Mutation_p.R530W|ITGAL_uc010vev.1_Intron	NM_002209	NP_002200	P20701	ITAL_HUMAN	integrin alpha L isoform a precursor	613	FG-GAP 7.|Extracellular (Potential).				blood coagulation|heterophilic cell-cell adhesion|inflammatory response|integrin-mediated signaling pathway|leukocyte cell-cell adhesion|leukocyte migration|regulation of immune response|T cell activation via T cell receptor contact with antigen bound to MHC molecule on antigen presenting cell	integrin complex	cell adhesion molecule binding|receptor activity			ovary(3)|lung(3)|central_nervous_system(3)|breast(1)	10					Efalizumab(DB00095)	CTGCAGCTCCCGGCCCGTGGT	0.572		NaN											0	0	0	8.12818e-05	0	7	25									
CNOT1	23019	broad.mit.edu	37	16	58572154	58572154	+	Nonsense_Mutation	SNP	G	G	A			TCGA-DK-A2I1-01A-11D-A17V-08	TCGA-DK-A2I1-10A-01D-A17V-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f350676a-e308-42fe-8297-9d18ba7027b1	bba7b385-f707-4654-ba9e-cd3bbebf4859	g.chr16:58572154G>A	uc002env.2	-	37	5445	c.5152C>T	c.(5152-5154)CGA>TGA	p.R1718*	CNOT1_uc002enw.2_RNA|CNOT1_uc002enu.3_Nonsense_Mutation_p.R1713*|CNOT1_uc010vik.1_Nonsense_Mutation_p.R675*	NM_016284	NP_057368	A5YKK6	CNOT1_HUMAN	CCR4-NOT transcription complex, subunit 1	1718					nuclear-transcribed mRNA poly(A) tail shortening|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasmic mRNA processing body|cytosol				ovary(4)|central_nervous_system(2)	6				Kidney(780;0.0722)|OV - Ovarian serous cystadenocarcinoma(108;0.173)|Epithelial(162;0.239)		TATTCATCTCGACATTCAATT	0.373		NaN											0	0	0	0.000422831	0	16	45									
HSD17B2	3294	broad.mit.edu	37	16	82131777	82131777	+	Silent	SNP	C	C	T			TCGA-DK-A2I1-01A-11D-A17V-08	TCGA-DK-A2I1-10A-01D-A17V-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f350676a-e308-42fe-8297-9d18ba7027b1	bba7b385-f707-4654-ba9e-cd3bbebf4859	g.chr16:82131777C>T	uc002fgv.2	+	5	1072	c.900C>T	c.(898-900)ATC>ATT	p.I300I		NM_002153	NP_002144	P37059	DHB2_HUMAN	hydroxysteroid (17-beta) dehydrogenase 2	300					response to retinoic acid|steroid biosynthetic process	endoplasmic reticulum membrane|integral to membrane	17-alpha,20-alpha-dihydroxypregn-4-en-3-one dehydrogenase activity|binding|estradiol 17-beta-dehydrogenase activity|testosterone 17-beta-dehydrogenase (NAD+) activity			ovary(1)|central_nervous_system(1)	2					NADH(DB00157)	AGGACTACATCTTAGCACAGC	0.542		NaN											0	0	0	0.000491102	0	30	40									
FAM57A	79850	broad.mit.edu	37	17	643751	643751	+	Missense_Mutation	SNP	C	C	T	rs144403190		TCGA-DK-A2I1-01A-11D-A17V-08	TCGA-DK-A2I1-10A-01D-A17V-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f350676a-e308-42fe-8297-9d18ba7027b1	bba7b385-f707-4654-ba9e-cd3bbebf4859	g.chr17:643751C>T	uc002frp.2	+	4	456	c.415C>T	c.(415-417)CGG>TGG	p.R139W	FAM57A_uc002frq.2_Intron|FAM57A_uc002frr.2_Missense_Mutation_p.R49W	NM_024792	NP_079068	Q8TBR7	FA57A_HUMAN	family with sequence similarity 57, member A	139	TLC.					integral to membrane|plasma membrane					0				UCEC - Uterine corpus endometrioid carcinoma (25;0.0217)		GCAGAGGCTCCGGGGAGACCT	0.517		NaN											0	0	0	0.000602214	0	5	95									
USP6	9098	broad.mit.edu	37	17	5041030	5041030	+	Missense_Mutation	SNP	C	C	G			TCGA-DK-A2I1-01A-11D-A17V-08	TCGA-DK-A2I1-10A-01D-A17V-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f350676a-e308-42fe-8297-9d18ba7027b1	bba7b385-f707-4654-ba9e-cd3bbebf4859	g.chr17:5041030C>G	uc002gau.1	+	20	3140	c.910C>G	c.(910-912)CTT>GTT	p.L304V	USP6_uc002gav.1_Missense_Mutation_p.L304V|USP6_uc010ckz.1_5'UTR|uc002gbd.2_5'Flank	NM_004505	NP_004496	P35125	UBP6_HUMAN	ubiquitin specific protease 6	304					protein deubiquitination|regulation of vesicle-mediated transport|ubiquitin-dependent protein catabolic process	lysosome|plasma membrane|recycling endosome	calmodulin binding|cysteine-type endopeptidase activity|nucleic acid binding|protein binding|Rab GTPase activator activity|ubiquitin thiolesterase activity|ubiquitin-specific protease activity			skin(2)|upper_aerodigestive_tract(1)|lung(1)|breast(1)	5						CAGCATTGCTCTTAAGGTTCA	0.587		NaN	T	COL1A1|CDH11|ZNF9|OMD	aneurysmal bone cysts								0	0	0	0.000147903	0	58	41									
TMEM102	284114	broad.mit.edu	37	17	7339584	7339584	+	Missense_Mutation	SNP	G	G	C			TCGA-DK-A2I1-01A-11D-A17V-08	TCGA-DK-A2I1-10A-01D-A17V-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f350676a-e308-42fe-8297-9d18ba7027b1	bba7b385-f707-4654-ba9e-cd3bbebf4859	g.chr17:7339584G>C	uc002ggx.1	+	3	559	c.286G>C	c.(286-288)GAG>CAG	p.E96Q	FGF11_uc010vtw.1_Intron|TMEM102_uc002ggy.1_Missense_Mutation_p.E96Q	NM_178518	NP_848613	Q8N9M5	TM102_HUMAN	transmembrane protein 102	96	Extracellular (Potential).				regulation of apoptosis|response to cytokine stimulus|signal transduction	cell surface|integral to membrane|intracellular	protein binding				0		Prostate(122;0.173)				TGGGATTCGCGAGGGCTCCCT	0.617		NaN											0	0	0	9.7654e-05	0	18	15									
MYH10	4628	broad.mit.edu	37	17	8396109	8396109	+	Silent	SNP	C	C	T			TCGA-DK-A2I1-01A-11D-A17V-08	TCGA-DK-A2I1-10A-01D-A17V-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f350676a-e308-42fe-8297-9d18ba7027b1	bba7b385-f707-4654-ba9e-cd3bbebf4859	g.chr17:8396109C>T	uc002gll.2	-	31	4446	c.4350G>A	c.(4348-4350)CAG>CAA	p.Q1450Q	MYH10_uc002glm.2_Silent_p.Q1481Q|MYH10_uc010cnx.2_Silent_p.Q1459Q	NM_005964	NP_005955	P35580	MYH10_HUMAN	myosin, heavy polypeptide 10, non-muscle	1450	Potential.				actin filament-based movement|axon guidance|cytokinesis after mitosis|regulation of cell shape	cell cortex|cleavage furrow|midbody|myosin complex|stress fiber	actin filament binding|actin-dependent ATPase activity|ADP binding|ATP binding|calmodulin binding|microfilament motor activity			ovary(2)	2						CAAACTTCTTCTGCTTCTTCT	0.517		NaN											0	0	0	8.12818e-05	0	7	27									
MYH3	4621	broad.mit.edu	37	17	10558329	10558330	+	Missense_Mutation	DNP	CG	CG	AT			TCGA-DK-A2I1-01A-11D-A17V-08	TCGA-DK-A2I1-10A-01D-A17V-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f350676a-e308-42fe-8297-9d18ba7027b1	bba7b385-f707-4654-ba9e-cd3bbebf4859	g.chr17:10558329_10558330CG>AT	uc002gmq.1	-	2	129_130	c.52_53CG>AT	c.(52-54)CGG>ATG	p.R18M		NM_002470	NP_002461	P11055	MYH3_HUMAN	myosin, heavy chain 3, skeletal muscle,	18	Myosin head-like.				muscle filament sliding|muscle organ development	cytosol|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|microfilament motor activity			ovary(4)|central_nervous_system(2)|pancreas(1)	7						TTCTGACTTCCGGAGGAAAGGA	0.53		NaN											0	0	0	6.4e-05	0	6	107									
TMEM97	27346	broad.mit.edu	37	17	26646275	26646275	+	Missense_Mutation	SNP	C	C	G			TCGA-DK-A2I1-01A-11D-A17V-08	TCGA-DK-A2I1-10A-01D-A17V-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f350676a-e308-42fe-8297-9d18ba7027b1	bba7b385-f707-4654-ba9e-cd3bbebf4859	g.chr17:26646275C>G	uc002hat.2	+	1	155	c.10C>G	c.(10-12)CCG>GCG	p.P4A		NM_014573	NP_055388	Q5BJF2	TMM97_HUMAN	transmembrane protein 97	4	Cytoplasmic (Potential).				cholesterol homeostasis|regulation of cell growth	integral to membrane|lysosome|nuclear membrane|plasma membrane|rough endoplasmic reticulum	protein binding				0	all_lung(13;0.000238)|Lung NSC(42;0.000789)			UCEC - Uterine corpus endometrioid carcinoma (53;0.153)		TATGGGGGCTCCGGCAACCAG	0.677		NaN											0	0	0	8.12818e-05	0	6	25									
TMEM97	27346	broad.mit.edu	37	17	26646322	26646322	+	Silent	SNP	C	C	T			TCGA-DK-A2I1-01A-11D-A17V-08	TCGA-DK-A2I1-10A-01D-A17V-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f350676a-e308-42fe-8297-9d18ba7027b1	bba7b385-f707-4654-ba9e-cd3bbebf4859	g.chr17:26646322C>T	uc002hat.2	+	1	202	c.57C>T	c.(55-57)CTC>CTT	p.L19L		NM_014573	NP_055388	Q5BJF2	TMM97_HUMAN	transmembrane protein 97	19	Helical; (Potential).				cholesterol homeostasis|regulation of cell growth	integral to membrane|lysosome|nuclear membrane|plasma membrane|rough endoplasmic reticulum	protein binding				0	all_lung(13;0.000238)|Lung NSC(42;0.000789)			UCEC - Uterine corpus endometrioid carcinoma (53;0.153)		TCTACTTCCTCAGCCACATCC	0.672		NaN											0	0	0	6.40141e-05	0	10	19									
SEBOX	645832	broad.mit.edu	37	17	26691931	26691931	+	Silent	SNP	G	G	A			TCGA-DK-A2I1-01A-11D-A17V-08	TCGA-DK-A2I1-10A-01D-A17V-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f350676a-e308-42fe-8297-9d18ba7027b1	bba7b385-f707-4654-ba9e-cd3bbebf4859	g.chr17:26691931G>A	uc010wai.1	-	2	170	c.156C>T	c.(154-156)TTC>TTT	p.F52F	SARM1_uc010wah.1_Intron|SEBOX_uc010crk.1_Silent_p.F51F|SARM1_uc010waj.1_Intron	NM_001080837	NP_001074306	Q9HB31	SEBOX_HUMAN	SEBOX homeobox isoform 1	52	Homeobox.				cell differentiation|multicellular organismal development	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0	all_lung(13;0.000354)|Lung NSC(42;0.00115)			UCEC - Uterine corpus endometrioid carcinoma (53;0.153)		GCCCTTTGCTGAAGGTGGTCC	0.637		NaN											0	0	0	0.000157383	0	8	16									
LIG3	3980	broad.mit.edu	37	17	33310224	33310224	+	Missense_Mutation	SNP	G	G	A			TCGA-DK-A2I1-01A-11D-A17V-08	TCGA-DK-A2I1-10A-01D-A17V-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f350676a-e308-42fe-8297-9d18ba7027b1	bba7b385-f707-4654-ba9e-cd3bbebf4859	g.chr17:33310224G>A	uc002hik.1	+	2	308	c.200G>A	c.(199-201)CGT>CAT	p.R67H	LIG3_uc002hii.2_Missense_Mutation_p.R67H|LIG3_uc002hij.2_Missense_Mutation_p.R67H|LIG3_uc010cth.1_Missense_Mutation_p.R76H	NM_013975	NP_039269	P49916	DNLI3_HUMAN	ligase III, DNA, ATP-dependent isoform alpha	67					base-excision repair|cell division|DNA ligation involved in DNA repair|DNA replication|reciprocal meiotic recombination|spermatogenesis	nucleoplasm	ATP binding|DNA binding|DNA ligase (ATP) activity|protein binding|zinc ion binding			skin(3)|lung(2)|ovary(2)|large_intestine(1)|pancreas(1)	9		Ovarian(249;0.17)			Bleomycin(DB00290)	CTAAGATCACGTGCCACCTAC	0.517		NaN						Other_BER_factors					0	0	0	0.000228196	0	38	77									
SLFN13	146857	broad.mit.edu	37	17	33768156	33768156	+	Missense_Mutation	SNP	G	G	A			TCGA-DK-A2I1-01A-11D-A17V-08	TCGA-DK-A2I1-10A-01D-A17V-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f350676a-e308-42fe-8297-9d18ba7027b1	bba7b385-f707-4654-ba9e-cd3bbebf4859	g.chr17:33768156G>A	uc002hjk.1	-	4	2482	c.2152C>T	c.(2152-2154)CTC>TTC	p.L718F	SLFN13_uc010wch.1_Missense_Mutation_p.L718F|SLFN13_uc002hjl.2_Missense_Mutation_p.L718F|SLFN13_uc010ctt.2_Missense_Mutation_p.L400F|SLFN13_uc002hjm.2_Missense_Mutation_p.L387F	NM_144682	NP_653283	Q68D06	SLN13_HUMAN	schlafen family member 13	718						intracellular	ATP binding			ovary(1)|breast(1)	2				UCEC - Uterine corpus endometrioid carcinoma (308;0.0185)		TGTGCTGAGAGAGGGGGAAGG	0.438		NaN											0	0	0	0.000339439	0	33	207									
PEX12	5193	broad.mit.edu	37	17	33902981	33902981	+	Missense_Mutation	SNP	C	C	T			TCGA-DK-A2I1-01A-11D-A17V-08	TCGA-DK-A2I1-10A-01D-A17V-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f350676a-e308-42fe-8297-9d18ba7027b1	bba7b385-f707-4654-ba9e-cd3bbebf4859	g.chr17:33902981C>T	uc002hjp.2	-	3	1516	c.900G>A	c.(898-900)ATG>ATA	p.M300I		NM_000286	NP_000277	O00623	PEX12_HUMAN	peroxisomal biogenesis factor 12	300	Cytoplasmic (Potential).				protein import into peroxisome matrix	integral to peroxisomal membrane	protein C-terminus binding|zinc ion binding				0				UCEC - Uterine corpus endometrioid carcinoma (308;0.0182)		ACACAGTCTTCATTTTGGGTA	0.458		NaN											0	0	0	0.000375601	0	24	98									
MRM1	79922	broad.mit.edu	37	17	34964825	34964825	+	Missense_Mutation	SNP	G	G	C			TCGA-DK-A2I1-01A-11D-A17V-08	TCGA-DK-A2I1-10A-01D-A17V-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f350676a-e308-42fe-8297-9d18ba7027b1	bba7b385-f707-4654-ba9e-cd3bbebf4859	g.chr17:34964825G>C	uc002hne.2	+	5	1251	c.1036G>C	c.(1036-1038)GAG>CAG	p.E346Q	MRM1_uc002hnf.2_Missense_Mutation_p.E151Q	NM_024864	NP_079140	Q6IN84	MRM1_HUMAN	mitochondrial rRNA methyltransferase 1 homolog	346					RNA processing	mitochondrion	RNA binding|RNA methyltransferase activity				0		Breast(25;0.00957)|Ovarian(249;0.17)		UCEC - Uterine corpus endometrioid carcinoma (308;0.0184)		TTCAGGCCCAGAGAAAGAGAG	0.622		NaN											0	0	0	9.22233e-05	0	24	62									
CDK12	51755	broad.mit.edu	37	17	37627781	37627781	+	Silent	SNP	C	C	T			TCGA-DK-A2I1-01A-11D-A17V-08	TCGA-DK-A2I1-10A-01D-A17V-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f350676a-e308-42fe-8297-9d18ba7027b1	bba7b385-f707-4654-ba9e-cd3bbebf4859	g.chr17:37627781C>T	uc010cvv.2	+	2	2282	c.1696C>T	c.(1696-1698)CTG>TTG	p.L566L	CDK12_uc010wef.1_Silent_p.L565L|CDK12_uc002hrw.3_Silent_p.L566L	NM_016507	NP_057591	Q9NYV4	CDK12_HUMAN	Cdc2-related kinase, arginine/serine-rich	566					mRNA processing|phosphorylation of RNA polymerase II C-terminal domain|protein autophosphorylation|regulation of MAP kinase activity|RNA splicing	nuclear cyclin-dependent protein kinase holoenzyme complex|nuclear speck|nucleolus	ATP binding|cyclin-dependent protein kinase activity|protein binding|RNA polymerase II carboxy-terminal domain kinase activity			ovary(10)|lung(4)|breast(2)|skin(2)|large_intestine(1)	19						GCAACCACCTCTGCCTCCTTC	0.547		NaN								TCGA Ovarian(9;0.13)			0	0	0	0.000147903	0	71	259									
DBF4B	80174	broad.mit.edu	37	17	42828543	42828543	+	Silent	SNP	C	C	T			TCGA-DK-A2I1-01A-11D-A17V-08	TCGA-DK-A2I1-10A-01D-A17V-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f350676a-e308-42fe-8297-9d18ba7027b1	bba7b385-f707-4654-ba9e-cd3bbebf4859	g.chr17:42828543C>T	uc002ihf.2	+	14	1983	c.1770C>T	c.(1768-1770)CTC>CTT	p.L590L	DBF4B_uc010wjc.1_Intron	NM_145663	NP_663696	Q8NFT6	DBF4B_HUMAN	DBF4 homolog B isoform 1	590					cell cycle	nucleus	nucleic acid binding|zinc ion binding				0		Prostate(33;0.0322)				TTGGACATCTCTGCCAGGCCA	0.552		NaN											0	0	0	0.000147903	0	46	42									
ADAM11	4185	broad.mit.edu	37	17	42850284	42850284	+	Silent	SNP	C	C	T			TCGA-DK-A2I1-01A-11D-A17V-08	TCGA-DK-A2I1-10A-01D-A17V-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f350676a-e308-42fe-8297-9d18ba7027b1	bba7b385-f707-4654-ba9e-cd3bbebf4859	g.chr17:42850284C>T	uc002ihh.2	+	9	738	c.738C>T	c.(736-738)ATC>ATT	p.I246I	ADAM11_uc010wjd.1_Silent_p.I46I	NM_002390	NP_002381	O75078	ADA11_HUMAN	ADAM metallopeptidase domain 11 preproprotein	246	Extracellular (Potential).|Peptidase M12B.				integrin-mediated signaling pathway|proteolysis	integral to membrane|plasma membrane	integrin binding|metalloendopeptidase activity|zinc ion binding			pancreas(1)	1		Prostate(33;0.0959)				TAATTGTGATCAACGACCACC	0.612		NaN											0	0	0	0.000274275	0	9	29									
EFTUD2	9343	broad.mit.edu	37	17	42942371	42942371	+	Silent	SNP	C	C	T			TCGA-DK-A2I1-01A-11D-A17V-08	TCGA-DK-A2I1-10A-01D-A17V-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f350676a-e308-42fe-8297-9d18ba7027b1	bba7b385-f707-4654-ba9e-cd3bbebf4859	g.chr17:42942371C>T	uc002ihn.2	-	14	1473	c.1212G>A	c.(1210-1212)ACG>ACA	p.T404T	EFTUD2_uc010wje.1_Silent_p.T369T|EFTUD2_uc010wjf.1_Silent_p.T394T	NM_004247	NP_004238	Q15029	U5S1_HUMAN	elongation factor Tu GTP binding domain	404						Cajal body|catalytic step 2 spliceosome|cytoplasm|nuclear speck	GTP binding|GTPase activity|protein binding			ovary(1)	1		Prostate(33;0.109)				GCTCCTCCTTCGTCAGGTGGA	0.547		NaN									OREG0024466	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	0	0	0	0.000566183	0	18	83									
MKS1	54903	broad.mit.edu	37	17	56288082	56288082	+	Missense_Mutation	SNP	G	G	A			TCGA-DK-A2I1-01A-11D-A17V-08	TCGA-DK-A2I1-10A-01D-A17V-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f350676a-e308-42fe-8297-9d18ba7027b1	bba7b385-f707-4654-ba9e-cd3bbebf4859	g.chr17:56288082G>A	uc002ivr.1	-	11	1037	c.962C>T	c.(961-963)TCA>TTA	p.S321L	MKS1_uc010wnq.1_Missense_Mutation_p.S118L|MKS1_uc002ivs.1_Missense_Mutation_p.S321L	NM_017777	NP_060247	Q9NXB0	MKS1_HUMAN	Meckel syndrome type 1 protein isoform 1	321	B9.				cilium assembly	centrosome|cilium|microtubule basal body	protein binding			ovary(1)	1						GCCTTGGGCTGAAACTACGAG	0.438		NaN											0	0	0	0.000279167	0	29	59									
MED13	9969	broad.mit.edu	37	17	60069976	60069976	+	Missense_Mutation	SNP	C	C	A			TCGA-DK-A2I1-01A-11D-A17V-08	TCGA-DK-A2I1-10A-01D-A17V-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f350676a-e308-42fe-8297-9d18ba7027b1	bba7b385-f707-4654-ba9e-cd3bbebf4859	g.chr17:60069976C>A	uc002izo.2	-	11	2265	c.2188G>T	c.(2188-2190)GAT>TAT	p.D730Y		NM_005121	NP_005112	Q9UHV7	MED13_HUMAN	mediator complex subunit 13	730					androgen receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter|transcription initiation from RNA polymerase II promoter	mediator complex	ligand-dependent nuclear receptor transcription coactivator activity|receptor activity|RNA polymerase II transcription cofactor activity|thyroid hormone receptor binding|vitamin D receptor binding			large_intestine(1)|ovary(1)	2						GATGTCCCATCTTCTACCTGC	0.239		NaN											1	0	3.09899e-07	0.000274275	4.90421e-06	9	52									
DDX5	1655	broad.mit.edu	37	17	62496163	62496163	+	Nonsense_Mutation	SNP	G	G	A			TCGA-DK-A2I1-01A-11D-A17V-08	TCGA-DK-A2I1-10A-01D-A17V-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f350676a-e308-42fe-8297-9d18ba7027b1	bba7b385-f707-4654-ba9e-cd3bbebf4859	g.chr17:62496163G>A	uc002jek.2	-	13	1970	c.1723C>T	c.(1723-1725)CAG>TAG	p.Q575*	POLG2_uc002jei.2_5'Flank|POLG2_uc010deg.1_5'Flank|DDX5_uc010deh.2_Nonsense_Mutation_p.Q575*|DDX5_uc002jej.2_Nonsense_Mutation_p.Q470*|DDX5_uc010wqa.1_Nonsense_Mutation_p.Q496*	NM_004396	NP_004387	P17844	DDX5_HUMAN	DEAD (Asp-Glu-Ala-Asp) box polypeptide 5	575					cell growth|regulation of alternative nuclear mRNA splicing, via spliceosome	catalytic step 2 spliceosome|nucleolus	ATP binding|ATP-dependent helicase activity|mRNA binding|protein binding|RNA helicase activity|transcription cofactor activity			ovary(2)|lung(1)	3	Breast(5;2.15e-14)		BRCA - Breast invasive adenocarcinoma(8;8.6e-12)			CCGTATTGCTGAGTGCTATCA	0.418		NaN	T	ETV4	prostate								0	0	0	0.00058488	0	36	51									
SLC25A19	60386	broad.mit.edu	37	17	73282772	73282772	+	Missense_Mutation	SNP	G	G	C			TCGA-DK-A2I1-01A-11D-A17V-08	TCGA-DK-A2I1-10A-01D-A17V-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f350676a-e308-42fe-8297-9d18ba7027b1	bba7b385-f707-4654-ba9e-cd3bbebf4859	g.chr17:73282772G>C	uc002jns.3	-	1	984	c.74C>G	c.(73-75)TCT>TGT	p.S25C	SLC25A19_uc010dge.2_Missense_Mutation_p.S25C|SLC25A19_uc002jnv.3_Missense_Mutation_p.S25C|SLC25A19_uc002jnu.3_Missense_Mutation_p.S25C|SLC25A19_uc002jnw.3_Missense_Mutation_p.S25C|SLC25A19_uc002jnt.3_Missense_Mutation_p.S25C	NM_021734	NP_068380	Q9HC21	TPC_HUMAN	solute carrier family 25, member 19	25	Helical; Name=1; (Potential).|Solcar 1.					integral to membrane|mitochondrial inner membrane	binding|deoxynucleotide transmembrane transporter activity			ovary(1)	1	all_cancers(13;5.98e-08)|all_epithelial(9;1.16e-08)|Breast(9;3.1e-08)		all cancers(21;6.82e-07)|Epithelial(20;6.86e-06)			AACAAGTCCAGACACAGACCC	0.537		NaN											0	0	0	0.00024832	0	4	56									
RECQL5	9400	broad.mit.edu	37	17	73658835	73658836	+	Missense_Mutation	DNP	CC	CC	AA			TCGA-DK-A2I1-01A-11D-A17V-08	TCGA-DK-A2I1-10A-01D-A17V-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f350676a-e308-42fe-8297-9d18ba7027b1	bba7b385-f707-4654-ba9e-cd3bbebf4859	g.chr17:73658835_73658836CC>AA	uc010dgl.2	-	4	650_651	c.494_495GG>TT	c.(493-495)TGG>TTT	p.W165F	RECQL5_uc010dgk.2_Missense_Mutation_p.W138F|RECQL5_uc002jpb.1_Missense_Mutation_p.W165F|RECQL5_uc002joz.3_Missense_Mutation_p.W165F|RECQL5_uc002jpa.3_Missense_Mutation_p.W165F	NM_004259	NP_004250	O94762	RECQ5_HUMAN	RecQ protein-like 5 isoform 1	165	Helicase ATP-binding.				DNA recombination|DNA repair	cytoplasm|nuclear membrane|nucleolus|nucleoplasm	ATP binding|ATP-dependent helicase activity|DNA helicase activity|nucleic acid binding			kidney(3)	3	all_cancers(13;2.73e-08)|Breast(9;6.04e-09)|all_epithelial(9;6.79e-09)		all cancers(21;1.15e-06)|Epithelial(20;2.19e-06)|Lung(188;0.101)|LUSC - Lung squamous cell carcinoma(166;0.112)			AGTCATGCCCCCATTGGGAAAC	0.609		NaN						Other_identified_genes_with_known_or_suspected_DNA_repair_function					0	0	0	6.4e-05	0	10	180									
MYOM1	8736	broad.mit.edu	37	18	3129298	3129298	+	Missense_Mutation	SNP	G	G	T			TCGA-DK-A2I1-01A-11D-A17V-08	TCGA-DK-A2I1-10A-01D-A17V-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f350676a-e308-42fe-8297-9d18ba7027b1	bba7b385-f707-4654-ba9e-cd3bbebf4859	g.chr18:3129298G>T	uc002klp.2	-	18	3060	c.2726C>A	c.(2725-2727)CCG>CAG	p.P909Q	MYOM1_uc002klq.2_Intron	NM_003803	NP_003794	P52179	MYOM1_HUMAN	myomesin 1 isoform a	909						striated muscle myosin thick filament	structural constituent of muscle			ovary(3)|central_nervous_system(1)|pancreas(1)	5						CTGTGGTGGCGGGGTAAGCTC	0.493		NaN									OREG0024838	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	1	0	0.000602214	0.000602214	0.00908751	5	75									
DTNA	1837	broad.mit.edu	37	18	32438313	32438313	+	Missense_Mutation	SNP	G	G	C			TCGA-DK-A2I1-01A-11D-A17V-08	TCGA-DK-A2I1-10A-01D-A17V-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f350676a-e308-42fe-8297-9d18ba7027b1	bba7b385-f707-4654-ba9e-cd3bbebf4859	g.chr18:32438313G>C	uc010dmn.1	+	15	1517	c.1516G>C	c.(1516-1518)GAG>CAG	p.E506Q	DTNA_uc010xbx.1_Missense_Mutation_p.E256Q|DTNA_uc002kxv.3_Missense_Mutation_p.E449Q|DTNA_uc002kxw.2_Missense_Mutation_p.E449Q|DTNA_uc010dmj.2_Missense_Mutation_p.E446Q|DTNA_uc002kxz.2_Missense_Mutation_p.E446Q|DTNA_uc002kxy.2_Missense_Mutation_p.E446Q|DTNA_uc010dml.2_Missense_Mutation_p.E446Q|DTNA_uc002kyb.3_Missense_Mutation_p.E503Q|DTNA_uc010dmm.2_Missense_Mutation_p.E506Q|DTNA_uc010xby.1_Missense_Mutation_p.E196Q|DTNA_uc010dmo.2_Missense_Mutation_p.E128Q|DTNA_uc002kyd.3_Missense_Mutation_p.E128Q|DTNA_uc010xbz.1_Missense_Mutation_p.E215Q|DTNA_uc010xca.1_Missense_Mutation_p.E158Q|DTNA_uc002kye.2_Missense_Mutation_p.E154Q	NM_001390	NP_001381	Q9Y4J8	DTNA_HUMAN	dystrobrevin alpha isoform 1	506	Potential.				neuromuscular synaptic transmission|signal transduction|striated muscle contraction	cell junction|cytoplasm|synapse	calcium ion binding|protein binding|zinc ion binding				0						GCCCACGCCAGAGAAGGCACA	0.512		NaN											0	0	0	0.000117367	0	25	22									
CD226	10666	broad.mit.edu	37	18	67614163	67614163	+	Missense_Mutation	SNP	G	G	T			TCGA-DK-A2I1-01A-11D-A17V-08	TCGA-DK-A2I1-10A-01D-A17V-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f350676a-e308-42fe-8297-9d18ba7027b1	bba7b385-f707-4654-ba9e-cd3bbebf4859	g.chr18:67614163G>T	uc010dqo.2	-	2	636	c.189C>A	c.(187-189)TTC>TTA	p.F63L	CD226_uc002lkm.3_Missense_Mutation_p.F63L	NM_006566	NP_006557	Q15762	CD226_HUMAN	CD226 molecule precursor	63	Ig-like C2-type 1.|Extracellular (Potential).				cell adhesion|cell recognition|positive regulation of Fc receptor mediated stimulatory signaling pathway|positive regulation of immunoglobulin mediated immune response|positive regulation of mast cell activation|positive regulation of natural killer cell mediated cytotoxicity directed against tumor cell target	cell surface|integral to plasma membrane|membrane raft	cell adhesion molecule binding|integrin binding|protein kinase binding|receptor activity				0		Esophageal squamous(42;0.129)				GAGTAGGGCTGAAAATGGCTA	0.453		NaN											1	0	1.75199e-13	0.000184323	2.8293e-12	28	22									
SOCS6	9306	broad.mit.edu	37	18	67992477	67992477	+	Silent	SNP	G	G	A			TCGA-DK-A2I1-01A-11D-A17V-08	TCGA-DK-A2I1-10A-01D-A17V-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f350676a-e308-42fe-8297-9d18ba7027b1	bba7b385-f707-4654-ba9e-cd3bbebf4859	g.chr18:67992477G>A	uc002lkr.1	+	2	889	c.573G>A	c.(571-573)CTG>CTA	p.L191L	SOCS6_uc010dqq.2_Silent_p.L191L	NM_004232	NP_004223	O14544	SOCS6_HUMAN	suppressor of cytokine signaling 6	191					defense response|JAK-STAT cascade|negative regulation of signal transduction|regulation of growth	cytoplasm				large_intestine(1)|lung(1)	2		Esophageal squamous(42;0.129)|Colorectal(73;0.152)				CCAATTCACTGAAGAGCTCGG	0.522		NaN											0	0	0	9.22233e-05	0	25	65									
GZMM	3004	broad.mit.edu	37	19	549010	549010	+	Missense_Mutation	SNP	G	G	A			TCGA-DK-A2I1-01A-11D-A17V-08	TCGA-DK-A2I1-10A-01D-A17V-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f350676a-e308-42fe-8297-9d18ba7027b1	bba7b385-f707-4654-ba9e-cd3bbebf4859	g.chr19:549010G>A	uc002low.1	+	4	482	c.437G>A	c.(436-438)AGC>AAC	p.S146N		NM_005317	NP_005308	P51124	GRAM_HUMAN	granzyme M precursor	146	Peptidase S1.				apoptosis|cytolysis|innate immune response|proteolysis	extracellular region	serine-type endopeptidase activity				0		all_cancers(10;1.94e-35)|all_epithelial(18;5.94e-23)|Acute lymphoblastic leukemia(61;2.53e-14)|all_hematologic(61;8.18e-10)|Lung NSC(49;3.55e-06)|all_lung(49;5.41e-06)|Breast(49;4.08e-05)|Hepatocellular(1079;0.137)|Renal(1328;0.228)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		ACTCGGTGCAGCATGGCCGGC	0.682		NaN											0	0	0	3.59834e-05	0	6	19									
STAP2	55620	broad.mit.edu	37	19	4333712	4333712	+	Silent	SNP	C	C	A			TCGA-DK-A2I1-01A-11D-A17V-08	TCGA-DK-A2I1-10A-01D-A17V-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f350676a-e308-42fe-8297-9d18ba7027b1	bba7b385-f707-4654-ba9e-cd3bbebf4859	g.chr19:4333712C>A	uc002mab.2	-	3	373	c.276G>T	c.(274-276)CGG>CGT	p.R92R	STAP2_uc002mac.2_Silent_p.R92R|STAP2_uc002mad.2_5'UTR	NM_001013841	NP_001013863	Q9UGK3	STAP2_HUMAN	signal transducing adaptor family member 2	92	PH.					cytoplasm|nucleus	protein binding			central_nervous_system(1)	1		Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.0339)|STAD - Stomach adenocarcinoma(1328;0.18)		TCTCCTGATCCCGGAGAATCA	0.547		NaN											1	0	3.59834e-05	3.59834e-05	0.000558247	6	41									
PRR22	163154	broad.mit.edu	37	19	5784138	5784138	+	Silent	SNP	G	G	C			TCGA-DK-A2I1-01A-11D-A17V-08	TCGA-DK-A2I1-10A-01D-A17V-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f350676a-e308-42fe-8297-9d18ba7027b1	bba7b385-f707-4654-ba9e-cd3bbebf4859	g.chr19:5784138G>C	uc002mdb.1	-	1	473	c.114C>G	c.(112-114)CCC>CCG	p.P38P	PRR22_uc010xiv.1_Intron	NM_153359	NP_699190	Q8IZ63	PRR22_HUMAN	proline rich 22 isoform 2	38											0						GGGCCTGTTTGGGAGATGCCA	0.637		NaN											0	0	0	0.000566183	0	16	137									
MUC16	94025	broad.mit.edu	37	19	9059205	9059205	+	Missense_Mutation	SNP	C	C	T			TCGA-DK-A2I1-01A-11D-A17V-08	TCGA-DK-A2I1-10A-01D-A17V-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f350676a-e308-42fe-8297-9d18ba7027b1	bba7b385-f707-4654-ba9e-cd3bbebf4859	g.chr19:9059205C>T	uc002mkp.2	-	3	28445	c.28241G>A	c.(28240-28242)AGA>AAA	p.R9414K		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	9416	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						CTCAGGACCTCTGCTCATAGG	0.512		NaN											0	0	0	0.000147903	0	47	100									
ZNF791	163049	broad.mit.edu	37	19	12738664	12738664	+	Silent	SNP	A	A	G			TCGA-DK-A2I1-01A-11D-A17V-08	TCGA-DK-A2I1-10A-01D-A17V-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f350676a-e308-42fe-8297-9d18ba7027b1	bba7b385-f707-4654-ba9e-cd3bbebf4859	g.chr19:12738664A>G	uc002mua.2	+	4	483	c.321A>G	c.(319-321)AAA>AAG	p.K107K	ZNF791_uc010xml.1_Silent_p.K75K|ZNF791_uc010dyu.1_5'UTR|ZNF791_uc010xmm.1_5'UTR	NM_153358	NP_699189	Q3KP31	ZN791_HUMAN	zinc finger protein 791	107	C2H2-type 1.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)	2						TCTGTGGAAAAGCCTTCATGC	0.433		NaN											0	0	0	0.00024832	0	4	231									
ZSWIM4	65249	broad.mit.edu	37	19	13919937	13919937	+	Silent	SNP	C	C	G			TCGA-DK-A2I1-01A-11D-A17V-08	TCGA-DK-A2I1-10A-01D-A17V-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f350676a-e308-42fe-8297-9d18ba7027b1	bba7b385-f707-4654-ba9e-cd3bbebf4859	g.chr19:13919937C>G	uc002mxh.1	+	5	1104	c.915C>G	c.(913-915)CTC>CTG	p.L305L	ZSWIM4_uc010xng.1_Silent_p.L111L	NM_023072	NP_075560	Q9H7M6	ZSWM4_HUMAN	zinc finger, SWIM-type containing 4	305							zinc ion binding			central_nervous_system(2)	2			OV - Ovarian serous cystadenocarcinoma(19;2.94e-23)|Epithelial(5;4.58e-19)			TGCTGATTCTCATGACCGAGC	0.697		NaN											0	0	0	0.000308642	0	15	42									
PGLYRP2	114770	broad.mit.edu	37	19	15586931	15586931	+	Missense_Mutation	SNP	C	C	A			TCGA-DK-A2I1-01A-11D-A17V-08	TCGA-DK-A2I1-10A-01D-A17V-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f350676a-e308-42fe-8297-9d18ba7027b1	bba7b385-f707-4654-ba9e-cd3bbebf4859	g.chr19:15586931C>A	uc002nbf.3	-	2	683	c.550G>T	c.(550-552)GAT>TAT	p.D184Y	PGLYRP2_uc002nbg.3_Missense_Mutation_p.D184Y	NM_052890	NP_443122	Q96PD5	PGRP2_HUMAN	peptidoglycan recognition protein 2 precursor	184					defense response to Gram-positive bacterium|detection of bacterium|innate immune response|peptide amidation|peptidoglycan catabolic process	extracellular region|intracellular|membrane	N-acetylmuramoyl-L-alanine amidase activity|peptidoglycan receptor activity|zinc ion binding			ovary(3)	3						GCTCCAATATCTGCAGTGGTG	0.542		NaN											1	0	2.39187e-15	0.000132079	3.88539e-14	21	137									
PGLYRP2	114770	broad.mit.edu	37	19	15587202	15587202	+	Silent	SNP	C	C	G			TCGA-DK-A2I1-01A-11D-A17V-08	TCGA-DK-A2I1-10A-01D-A17V-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f350676a-e308-42fe-8297-9d18ba7027b1	bba7b385-f707-4654-ba9e-cd3bbebf4859	g.chr19:15587202C>G	uc002nbf.3	-	2	412	c.279G>C	c.(277-279)CTG>CTC	p.L93L	PGLYRP2_uc002nbg.3_Silent_p.L93L	NM_052890	NP_443122	Q96PD5	PGRP2_HUMAN	peptidoglycan recognition protein 2 precursor	93					defense response to Gram-positive bacterium|detection of bacterium|innate immune response|peptide amidation|peptidoglycan catabolic process	extracellular region|intracellular|membrane	N-acetylmuramoyl-L-alanine amidase activity|peptidoglycan receptor activity|zinc ion binding			ovary(3)	3						CCTCCTTGGTCAGGCCTAACA	0.617		NaN											0	0	0	0.000274275	0	8	58									
PGLYRP2	114770	broad.mit.edu	37	19	15587364	15587364	+	Silent	SNP	C	C	T			TCGA-DK-A2I1-01A-11D-A17V-08	TCGA-DK-A2I1-10A-01D-A17V-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f350676a-e308-42fe-8297-9d18ba7027b1	bba7b385-f707-4654-ba9e-cd3bbebf4859	g.chr19:15587364C>T	uc002nbf.3	-	2	250	c.117G>A	c.(115-117)CAG>CAA	p.Q39Q	PGLYRP2_uc002nbg.3_Silent_p.Q39Q	NM_052890	NP_443122	Q96PD5	PGRP2_HUMAN	peptidoglycan recognition protein 2 precursor	39					defense response to Gram-positive bacterium|detection of bacterium|innate immune response|peptide amidation|peptidoglycan catabolic process	extracellular region|intracellular|membrane	N-acetylmuramoyl-L-alanine amidase activity|peptidoglycan receptor activity|zinc ion binding			ovary(3)	3						CTGGCACTTTCTGCTCCAGCT	0.602		NaN											0	0	0	0.000602214	0	4	25									
COMP	1311	broad.mit.edu	37	19	18895873	18895873	+	Missense_Mutation	SNP	C	C	G			TCGA-DK-A2I1-01A-11D-A17V-08	TCGA-DK-A2I1-10A-01D-A17V-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f350676a-e308-42fe-8297-9d18ba7027b1	bba7b385-f707-4654-ba9e-cd3bbebf4859	g.chr19:18895873C>G	uc002nke.2	-	16	1783	c.1747G>C	c.(1747-1749)GAG>CAG	p.E583Q	COMP_uc002nkd.2_Missense_Mutation_p.E550Q|COMP_uc010xqj.1_Missense_Mutation_p.E530Q	NM_000095	NP_000086	P49747	COMP_HUMAN	cartilage oligomeric matrix protein precursor	583	Mediates cell survival and induction of the IAP family of survival proteins.|TSP C-terminal.				anti-apoptosis|apoptosis|cell adhesion|limb development	extracellular space|proteinaceous extracellular matrix	calcium ion binding|collagen binding|extracellular matrix structural constituent|heparan sulfate proteoglycan binding|heparin binding				0						AACGTGCCCTCGAAGTCCACG	0.582		NaN											0	0	0	0.000151284	0	11	72									
FBL	2091	broad.mit.edu	37	19	40329725	40329725	+	Missense_Mutation	SNP	C	C	T			TCGA-DK-A2I1-01A-11D-A17V-08	TCGA-DK-A2I1-10A-01D-A17V-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f350676a-e308-42fe-8297-9d18ba7027b1	bba7b385-f707-4654-ba9e-cd3bbebf4859	g.chr19:40329725C>T	uc002omn.2	-	5	613	c.499G>A	c.(499-501)GGG>AGG	p.G167R	FBL_uc002omm.1_Missense_Mutation_p.G81R|FBL_uc002omo.2_Missense_Mutation_p.G166R|FBL_uc010egr.2_Missense_Mutation_p.G167R	NM_001436	NP_001427	P22087	FBRL_HUMAN	fibrillarin	167					rRNA processing|tRNA processing	box C/D snoRNP complex|Cajal body	methyltransferase activity|protein binding|RNA binding			ovary(1)	1	all_cancers(60;5.79e-06)|all_lung(34;5.2e-08)|Lung NSC(34;6.14e-08)|Ovarian(47;0.06)	Renal(1328;0.000518)|Hepatocellular(1079;0.0893)	Epithelial(26;5.74e-25)|OV - Ovarian serous cystadenocarcinoma(5;3.13e-24)|all cancers(26;8.59e-23)	GBM - Glioblastoma multiforme(1328;0.000826)|STAD - Stomach adenocarcinoma(1328;0.138)		GAGGCAGCCCCGAGGTAGAGA	0.602		NaN											0	0	0	7.07596e-05	0	19	70									
SPTBN4	57731	broad.mit.edu	37	19	41025918	41025918	+	Missense_Mutation	SNP	G	G	A			TCGA-DK-A2I1-01A-11D-A17V-08	TCGA-DK-A2I1-10A-01D-A17V-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f350676a-e308-42fe-8297-9d18ba7027b1	bba7b385-f707-4654-ba9e-cd3bbebf4859	g.chr19:41025918G>A	uc002ony.2	+	16	3600	c.3514G>A	c.(3514-3516)GAG>AAG	p.E1172K	SPTBN4_uc002onx.2_Missense_Mutation_p.E1172K|SPTBN4_uc002onz.2_Missense_Mutation_p.E1172K|SPTBN4_uc010egx.2_5'UTR	NM_020971	NP_066022	Q9H254	SPTN4_HUMAN	spectrin, beta, non-erythrocytic 4 isoform	1172	Spectrin 9.				actin filament capping|axon guidance|cytoskeletal anchoring at plasma membrane|vesicle-mediated transport	cytosol|nuclear matrix|PML body|spectrin	actin binding|ankyrin binding|structural constituent of cytoskeleton			ovary(3)|central_nervous_system(1)|skin(1)	5			Lung(22;0.000114)|LUSC - Lung squamous cell carcinoma(20;0.000384)			GGCACTAGACGAGTGGCTGCC	0.682		NaN											0	0	0	3.86212e-05	0	9	24									
ATP5SL	55101	broad.mit.edu	37	19	41944170	41944170	+	Silent	SNP	C	C	T	rs118187504	byFrequency	TCGA-DK-A2I1-01A-11D-A17V-08	TCGA-DK-A2I1-10A-01D-A17V-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f350676a-e308-42fe-8297-9d18ba7027b1	bba7b385-f707-4654-ba9e-cd3bbebf4859	g.chr19:41944170C>T	uc002oqw.1	-	2	174	c.168G>A	c.(166-168)AGG>AGA	p.R56R	CYP2F1_uc010xvw.1_Intron|ATP5SL_uc002oqu.1_RNA|ATP5SL_uc002oqv.2_Silent_p.R62R|ATP5SL_uc010xwa.1_Silent_p.R62R|ATP5SL_uc002oqx.1_Silent_p.R56R|ATP5SL_uc002oqy.1_Silent_p.R56R|ATP5SL_uc002oqz.1_Silent_p.R56R|ATP5SL_uc002ora.1_Silent_p.R43R|ATP5SL_uc010xwb.1_Silent_p.R62R	NM_018035	NP_060505	Q9NW81	AT5SL_HUMAN	ATP5S-like	56										large_intestine(1)|breast(1)	2						GCAAGTAATCCCTCAGAGCCT	0.537		NaN											0	0	0	0.000147903	0	53	140									
CBLC	23624	broad.mit.edu	37	19	45296769	45296769	+	Silent	SNP	G	G	A			TCGA-DK-A2I1-01A-11D-A17V-08	TCGA-DK-A2I1-10A-01D-A17V-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f350676a-e308-42fe-8297-9d18ba7027b1	bba7b385-f707-4654-ba9e-cd3bbebf4859	g.chr19:45296769G>A	uc002ozs.2	+	8	1239	c.1176G>A	c.(1174-1176)GAG>GAA	p.E392E	CBLC_uc010ejt.2_Silent_p.E346E	NM_012116	NP_036248	Q9ULV8	CBLC_HUMAN	Cas-Br-M (murine) ecotropic retroviral	392					cell surface receptor linked signaling pathway|negative regulation of epidermal growth factor receptor activity|negative regulation of MAP kinase activity|protein ubiquitination involved in ubiquitin-dependent protein catabolic process	nucleus	calcium ion binding|epidermal growth factor receptor binding|phosphotyrosine binding|SH3 domain binding|signal transducer activity|ubiquitin-protein ligase activity|zinc ion binding			ovary(4)|lung(1)|skin(1)	6	Lung NSC(12;0.00136)|all_lung(12;0.00371)	Ovarian(192;0.231)				GCCGCTGCGAGATCAAGGGCT	0.637		NaN	M		AML								0	0	0	0.000442599	0	8	15									
TMEM143	55260	broad.mit.edu	37	19	48866581	48866581	+	Missense_Mutation	SNP	G	G	C			TCGA-DK-A2I1-01A-11D-A17V-08	TCGA-DK-A2I1-10A-01D-A17V-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f350676a-e308-42fe-8297-9d18ba7027b1	bba7b385-f707-4654-ba9e-cd3bbebf4859	g.chr19:48866581G>C	uc002pix.1	-	2	240	c.231C>G	c.(229-231)TTC>TTG	p.F77L	TMEM143_uc002piw.1_RNA|TMEM143_uc002piy.1_Missense_Mutation_p.F77L|TMEM143_uc010xzn.1_Missense_Mutation_p.F77L|TMEM143_uc010elw.1_Missense_Mutation_p.F77L|TMEM143_uc010xzo.1_Intron|TMEM143_uc010xzp.1_Missense_Mutation_p.F77L|TMEM143_uc010xzq.1_Missense_Mutation_p.F77L|SYNGR4_uc002piz.2_5'Flank	NM_018273	NP_060743	Q96AN5	TM143_HUMAN	transmembrane protein 143	77						integral to membrane|mitochondrion					0		all_epithelial(76;9.64e-05)|all_lung(116;0.000147)|Lung NSC(112;0.000251)|Prostate(7;0.0187)|all_neural(266;0.0506)|Ovarian(192;0.113)		OV - Ovarian serous cystadenocarcinoma(262;0.000149)|all cancers(93;0.000198)|Epithelial(262;0.0151)|GBM - Glioblastoma multiforme(486;0.0157)		GCTCCTTGGAGAAGGGAATGA	0.652		NaN											0	0	0	0.00024832	0	4	44									
PLEKHA4	57664	broad.mit.edu	37	19	49362856	49362856	+	Missense_Mutation	SNP	C	C	T			TCGA-DK-A2I1-01A-11D-A17V-08	TCGA-DK-A2I1-10A-01D-A17V-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f350676a-e308-42fe-8297-9d18ba7027b1	bba7b385-f707-4654-ba9e-cd3bbebf4859	g.chr19:49362856C>T	uc002pkx.2	-	7	1113	c.562G>A	c.(562-564)GAG>AAG	p.E188K	PLEKHA4_uc002pkw.1_5'Flank|PLEKHA4_uc010eml.2_Missense_Mutation_p.E188K	NM_020904	NP_065955	Q9H4M7	PKHA4_HUMAN	pleckstrin homology domain containing family A	188	Pro-rich.					cytoplasm|membrane	1-phosphatidylinositol binding			ovary(1)|central_nervous_system(1)|skin(1)	3		all_lung(116;4.89e-05)|Lung NSC(112;8.3e-05)|all_epithelial(76;0.000108)|all_neural(266;0.0506)|Ovarian(192;0.113)		OV - Ovarian serous cystadenocarcinoma(262;0.00027)|all cancers(93;0.00084)|GBM - Glioblastoma multiforme(486;0.0244)|Epithelial(262;0.0364)		ATGCGCCCCTCTTCCCCTCTG	0.677		NaN											0	0	0	3.59834e-05	0	5	34									
NR1H2	7376	broad.mit.edu	37	19	50881040	50881040	+	Missense_Mutation	SNP	G	G	A			TCGA-DK-A2I1-01A-11D-A17V-08	TCGA-DK-A2I1-10A-01D-A17V-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f350676a-e308-42fe-8297-9d18ba7027b1	bba7b385-f707-4654-ba9e-cd3bbebf4859	g.chr19:50881040G>A	uc010enw.2	+	4	370	c.94G>A	c.(94-96)GAG>AAG	p.E32K	NR1H2_uc002prv.3_RNA|NR1H2_uc002prz.3_Missense_Mutation_p.E32K|NR1H2_uc002psa.3_Missense_Mutation_p.E32K	NM_007121	NP_009052	P55055	NR1H2_HUMAN	nuclear receptor subfamily 1, group H, member 2	32					negative regulation of cholesterol storage|negative regulation of interferon-gamma-mediated signaling pathway|negative regulation of lipid transport|negative regulation of pinocytosis|negative regulation of transcription, DNA-dependent|positive regulation of cellular protein metabolic process|positive regulation of cholesterol efflux|positive regulation of fatty acid biosynthetic process|positive regulation of lipoprotein lipase activity|positive regulation of transcription from RNA polymerase II promoter|positive regulation of triglyceride biosynthetic process|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	cytoplasm|nucleoplasm	sequence-specific DNA binding|steroid hormone receptor activity|zinc ion binding				0		all_neural(266;0.057)		OV - Ovarian serous cystadenocarcinoma(262;0.00757)|GBM - Glioblastoma multiforme(134;0.0186)		CACTGTAAAGGAGGAGGGTCC	0.647		NaN											0	0	0	3.86212e-05	0	10	51									
ZNF611	81856	broad.mit.edu	37	19	53209076	53209076	+	Nonsense_Mutation	SNP	G	G	C			TCGA-DK-A2I1-01A-11D-A17V-08	TCGA-DK-A2I1-10A-01D-A17V-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f350676a-e308-42fe-8297-9d18ba7027b1	bba7b385-f707-4654-ba9e-cd3bbebf4859	g.chr19:53209076G>C	uc002pzz.2	-	7	1549	c.1232C>G	c.(1231-1233)TCA>TGA	p.S411*	ZNF611_uc010eqc.2_Nonsense_Mutation_p.S341*|ZNF611_uc010ydo.1_Nonsense_Mutation_p.S341*|ZNF611_uc010ydr.1_Nonsense_Mutation_p.S342*|ZNF611_uc010ydp.1_Nonsense_Mutation_p.S411*|ZNF611_uc010ydq.1_Nonsense_Mutation_p.S411*|ZNF611_uc002qaa.3_Nonsense_Mutation_p.S341*	NM_030972	NP_112234	Q8N823	ZN611_HUMAN	zinc finger protein 611 isoform a	411	C2H2-type 7.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1				OV - Ovarian serous cystadenocarcinoma(262;0.0233)|GBM - Glioblastoma multiforme(134;0.04)		AGCCAGCTGTGAATGCCACGT	0.403		NaN											0	0	0	0.000147903	0	52	82									
CACNG8	59283	broad.mit.edu	37	19	54485522	54485522	+	Missense_Mutation	SNP	G	G	C			TCGA-DK-A2I1-01A-11D-A17V-08	TCGA-DK-A2I1-10A-01D-A17V-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f350676a-e308-42fe-8297-9d18ba7027b1	bba7b385-f707-4654-ba9e-cd3bbebf4859	g.chr19:54485522G>C	uc002qcs.1	+	4	800	c.694G>C	c.(694-696)GAG>CAG	p.E232Q	MIR935_hsa-mir-935|MI0005757_5'Flank	NM_031895	NP_114101	Q8WXS5	CCG8_HUMAN	voltage-dependent calcium channel gamma-8	233					regulation of alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity|synaptic transmission	alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid selective glutamate receptor complex|cell junction|endocytic vesicle membrane|postsynaptic density|postsynaptic membrane|voltage-gated calcium channel complex	voltage-gated calcium channel activity				0	all_cancers(19;0.0385)|all_epithelial(19;0.0207)|all_lung(19;0.145)|Lung NSC(19;0.168)|Ovarian(34;0.19)			GBM - Glioblastoma multiforme(134;0.162)		GCGCAGCCGCGAGGCGCACTG	0.577		NaN											0	0	0	0.000602214	0	4	6									
PKDCC	91461	broad.mit.edu	37	2	42282449	42282449	+	Missense_Mutation	SNP	G	G	C			TCGA-DK-A2I1-01A-11D-A17V-08	TCGA-DK-A2I1-10A-01D-A17V-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f350676a-e308-42fe-8297-9d18ba7027b1	bba7b385-f707-4654-ba9e-cd3bbebf4859	g.chr2:42282449G>C	uc002rsg.2	+	5	1317	c.1138G>C	c.(1138-1140)GAG>CAG	p.E380Q		NM_138370	NP_612379	Q504Y2	PKDCC_HUMAN	protein kinase-like protein SgK493	380	Protein kinase.				cell differentiation|embryonic digestive tract development|lung alveolus development|negative regulation of Golgi to plasma membrane protein transport|ossification|palate development|positive regulation of bone mineralization|positive regulation of chondrocyte differentiation|protein transport	Golgi apparatus	ATP binding|protein kinase activity			breast(1)	1						GGGGGTGGACGAGACCCTGGC	0.647		NaN											0	0	0	0.000442599	0	9	43									
INPP4A	3631	broad.mit.edu	37	2	99182196	99182196	+	Missense_Mutation	SNP	C	C	G			TCGA-DK-A2I1-01A-11D-A17V-08	TCGA-DK-A2I1-10A-01D-A17V-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f350676a-e308-42fe-8297-9d18ba7027b1	bba7b385-f707-4654-ba9e-cd3bbebf4859	g.chr2:99182196C>G	uc002syy.2	+	21	2654	c.2261C>G	c.(2260-2262)TCC>TGC	p.S754C	INPP4A_uc010yvj.1_Missense_Mutation_p.S715C|INPP4A_uc010yvk.1_Missense_Mutation_p.S715C|INPP4A_uc002syx.2_Missense_Mutation_p.S749C|INPP4A_uc010fik.2_Missense_Mutation_p.S83C	NM_001134224	NP_001127696	Q96PE3	INP4A_HUMAN	inositol polyphosphate-4-phosphatase, type 1	754					signal transduction		phosphatidylinositol-3,4-bisphosphate 4-phosphatase activity|phosphatidylinositol-4,5-bisphosphate 4-phosphatase activity			kidney(1)	1						TCCAGCGCCTCCGCAGACATG	0.517		NaN											0	0	0	0.000319135	0	35	57									
RABL2A	11159	broad.mit.edu	37	2	114399705	114399705	+	Silent	SNP	G	G	A			TCGA-DK-A2I1-01A-11D-A17V-08	TCGA-DK-A2I1-10A-01D-A17V-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f350676a-e308-42fe-8297-9d18ba7027b1	bba7b385-f707-4654-ba9e-cd3bbebf4859	g.chr2:114399705G>A	uc002tkn.3	+	9	900	c.686G>A	c.(685-687)TGA>TAA	p.*229*	RABL2A_uc010flb.2_Silent_p.*229*|RABL2A_uc002tkl.3_Silent_p.*148*|RABL2A_uc002tkm.3_Silent_p.*166*|RABL2A_uc002tks.3_Silent_p.*230*|RABL2A_uc002tkr.2_Silent_p.*230*|RABL2A_uc002tkp.3_Intron	NM_007082	NP_009013	Q9UBK7	RBL2A_HUMAN	RAB, member of RAS oncogene family-like 2A	229					small GTPase mediated signal transduction		GTP binding|GTPase activity			skin(1)	1						CCCCACAGCTGAGGGGCTGGG	0.572		NaN											0	0	0	0.00010058	0	12	41									
RALB	5899	broad.mit.edu	37	2	121043653	121043653	+	Silent	SNP	A	A	G			TCGA-DK-A2I1-01A-11D-A17V-08	TCGA-DK-A2I1-10A-01D-A17V-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f350676a-e308-42fe-8297-9d18ba7027b1	bba7b385-f707-4654-ba9e-cd3bbebf4859	g.chr2:121043653A>G	uc002tmk.2	+	3	508	c.318A>G	c.(316-318)GAA>GAG	p.E106E	RALB_uc010yys.1_Silent_p.E128E|RALB_uc002tml.2_Silent_p.E127E|RALB_uc002tmm.2_RNA|RALB_uc010yyt.1_Intron	NM_002881	NP_002872	P11234	RALB_HUMAN	v-ral simian leukemia viral oncogene homolog B	106					apoptosis|cell cycle|cytokinesis|nerve growth factor receptor signaling pathway|Ras protein signal transduction|regulation of exocyst assembly|regulation of exocyst localization	cytosol|midbody|plasma membrane	GTP binding|GTPase activity|protein binding			lung(3)	3		Prostate(154;0.122)				CAACTGCCGAATTCAGGTATG	0.438		NaN											0	0	0	6.4e-05	0	3	79									
NCKAP5	344148	broad.mit.edu	37	2	133543046	133543046	+	Silent	SNP	G	G	C			TCGA-DK-A2I1-01A-11D-A17V-08	TCGA-DK-A2I1-10A-01D-A17V-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f350676a-e308-42fe-8297-9d18ba7027b1	bba7b385-f707-4654-ba9e-cd3bbebf4859	g.chr2:133543046G>C	uc002ttp.2	-	14	1712	c.1338C>G	c.(1336-1338)CTC>CTG	p.L446L	NCKAP5_uc002ttq.2_Intron	NM_207363	NP_997246	O14513	NCKP5_HUMAN	Nck-associated protein 5 isoform 1	446							protein binding				0						GATACTCCTTGAGGCTGCTAC	0.458		NaN											0	0	0	0.000151284	0	14	44									
GPD2	2820	broad.mit.edu	37	2	157406241	157406241	+	Silent	SNP	G	G	A			TCGA-DK-A2I1-01A-11D-A17V-08	TCGA-DK-A2I1-10A-01D-A17V-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f350676a-e308-42fe-8297-9d18ba7027b1	bba7b385-f707-4654-ba9e-cd3bbebf4859	g.chr2:157406241G>A	uc002tzf.3	+	7	1143	c.783G>A	c.(781-783)GGG>GGA	p.G261G	GPD2_uc010zch.1_Silent_p.G34G|GPD2_uc002tzd.3_Silent_p.G261G|GPD2_uc002tze.1_RNA	NM_001083112	NP_001076581	P43304	GPDM_HUMAN	glycerol-3-phosphate dehydrogenase 2,	261					cellular lipid metabolic process	glycerol-3-phosphate dehydrogenase complex|mitochondrial inner membrane	calcium ion binding|sn-glycerol-3-phosphate:ubiquinone-8 oxidoreductase activity			ovary(1)	1						CCCAGACAGGGAAAGTGCGTG	0.522		NaN											0	0	0	0.000157383	0	7	18									
SCN3A	6328	broad.mit.edu	37	2	165952024	165952024	+	Missense_Mutation	SNP	C	C	G			TCGA-DK-A2I1-01A-11D-A17V-08	TCGA-DK-A2I1-10A-01D-A17V-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f350676a-e308-42fe-8297-9d18ba7027b1	bba7b385-f707-4654-ba9e-cd3bbebf4859	g.chr2:165952024C>G	uc002ucx.2	-	25	4920	c.4428G>C	c.(4426-4428)AAG>AAC	p.K1476N	SCN3A_uc010zcy.1_5'Flank|SCN3A_uc002ucy.2_Missense_Mutation_p.K1427N|SCN3A_uc002ucz.2_Missense_Mutation_p.K1427N	NM_006922	NP_008853	Q9NY46	SCN3A_HUMAN	sodium channel, voltage-gated, type III, alpha	1476						voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(4)|breast(3)|skin(2)|central_nervous_system(1)	10					Lamotrigine(DB00555)	TACTTATCTTCTTTTTCTGCT	0.338		NaN											0	0	0	0.000151284	0	13	53									
NAB1	4664	broad.mit.edu	37	2	191524441	191524441	+	Missense_Mutation	SNP	C	C	T			TCGA-DK-A2I1-01A-11D-A17V-08	TCGA-DK-A2I1-10A-01D-A17V-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f350676a-e308-42fe-8297-9d18ba7027b1	bba7b385-f707-4654-ba9e-cd3bbebf4859	g.chr2:191524441C>T	uc002usb.2	+	4	1111	c.539C>T	c.(538-540)TCC>TTC	p.S180F	NAB1_uc010fsc.2_Missense_Mutation_p.S180F|NAB1_uc010fsd.2_Missense_Mutation_p.S180F|NAB1_uc002usc.2_Missense_Mutation_p.S180F|NAB1_uc010zgh.1_Missense_Mutation_p.S180F	NM_005966	NP_005957	Q13506	NAB1_HUMAN	NGFI-A binding protein 1	180					negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus					0			OV - Ovarian serous cystadenocarcinoma(117;0.00318)|Epithelial(96;0.0405)|all cancers(119;0.109)			GACCTGGGCTCCCCCGCGTCC	0.632		NaN											0	0	0	3.59834e-05	0	6	13									
CXCR1	3577	broad.mit.edu	37	2	219029263	219029263	+	Silent	SNP	G	G	A			TCGA-DK-A2I1-01A-11D-A17V-08	TCGA-DK-A2I1-10A-01D-A17V-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f350676a-e308-42fe-8297-9d18ba7027b1	bba7b385-f707-4654-ba9e-cd3bbebf4859	g.chr2:219029263G>A	uc002vhc.2	-	2	791	c.672C>T	c.(670-672)TTC>TTT	p.F224F		NM_000634	NP_000625	P25024	CXCR1_HUMAN	interleukin 8 receptor alpha	224	Cytoplasmic (Potential).				dendritic cell chemotaxis|inflammatory response	integral to membrane|plasma membrane	interleukin-8 receptor activity			lung(2)	2						TACGCAGGGTGAATCCATAGC	0.542		NaN											0	0	0	0.000147802	0	29	98									
PSMD1	5707	broad.mit.edu	37	2	231947596	231947596	+	Splice_Site	SNP	G	G	C			TCGA-DK-A2I1-01A-11D-A17V-08	TCGA-DK-A2I1-10A-01D-A17V-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f350676a-e308-42fe-8297-9d18ba7027b1	bba7b385-f707-4654-ba9e-cd3bbebf4859	g.chr2:231947596G>C	uc002vrn.1	+	13	1545	c.1414_splice	c.e13-1	p.I472_splice	PSMD1_uc002vrm.1_Splice_Site_p.I472_splice|PSMD1_uc010fxu.1_Splice_Site_p.I336_splice	NM_002807	NP_002798	Q99460	PSMD1_HUMAN	proteasome 26S non-ATPase subunit 1						anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|G1/S transition of mitotic cell cycle|M/G1 transition of mitotic cell cycle|mRNA metabolic process|negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|regulation of apoptosis|regulation of cellular amino acid metabolic process|regulation of protein catabolic process|S phase of mitotic cell cycle|viral reproduction	proteasome regulatory particle	enzyme regulator activity|protein binding			ovary(1)|skin(1)	2		Ovarian(221;0.000626)|Medulloblastoma(418;0.0109)|Renal(207;0.0112)|Lung NSC(271;0.0538)|all_lung(227;0.0713)|all_hematologic(139;0.0748)|Acute lymphoblastic leukemia(138;0.167)		Epithelial(121;4e-26)|LUSC - Lung squamous cell carcinoma(224;0.0138)|Lung(119;0.0168)	Bortezomib(DB00188)	TTTTTCCTTAGATCGTTAGAC	0.368		NaN											0	0	0	0.000308642	0	13	43									
DNAJB3	414061	broad.mit.edu	37	2	234652280	234652280	+	Missense_Mutation	SNP	C	C	T			TCGA-DK-A2I1-01A-11D-A17V-08	TCGA-DK-A2I1-10A-01D-A17V-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f350676a-e308-42fe-8297-9d18ba7027b1	bba7b385-f707-4654-ba9e-cd3bbebf4859	g.chr2:234652280C>T	uc002vuz.2	-	1	382	c.283G>A	c.(283-285)GAC>AAC	p.D95N	UGT1A8_uc010zmv.1_Intron|UGT1A8_uc002vup.2_Intron|UGT1A10_uc002vuq.3_Intron|UGT1A10_uc002vur.2_Intron|UGT1A9_uc010zmw.1_Intron|UGT1A9_uc002vus.2_Intron|UGT1A7_uc010zmx.1_Intron|UGT1A7_uc002vut.2_Intron|UGT1A6_uc002vuu.2_Intron|UGT1A6_uc010zmy.1_Intron|UGT1A6_uc002vuv.3_Intron|UGT1A5_uc010zmz.1_Intron|UGT1A5_uc002vuw.2_Intron|UGT1A4_uc010zna.1_Intron|UGT1A4_uc002vux.2_Intron|UGT1A3_uc010znb.1_Intron|UGT1A3_uc002vuy.2_Intron	NM_001001394	NP_001001394	Q8WWF6	DNJB3_HUMAN	DnaJ (Hsp40) homolog, subfamily B, member 3	95					protein folding		heat shock protein binding|unfolded protein binding				0						TCGGCTGGGTCGCGGAAGCTG	0.627		NaN											0	0	0	0.000132079	0	17	56									
RBM44	375316	broad.mit.edu	37	2	238726844	238726844	+	Missense_Mutation	SNP	A	A	G			TCGA-DK-A2I1-01A-11D-A17V-08	TCGA-DK-A2I1-10A-01D-A17V-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f350676a-e308-42fe-8297-9d18ba7027b1	bba7b385-f707-4654-ba9e-cd3bbebf4859	g.chr2:238726844A>G	uc002vxi.3	+	3	1417	c.1285A>G	c.(1285-1287)ACG>GCG	p.T429A		NM_001080504	NP_001073973	Q6ZP01	RBM44_HUMAN	RNA binding motif protein 44	428							nucleotide binding|RNA binding			ovary(4)	4		Breast(86;0.0042)|Renal(207;0.00571)|Ovarian(221;0.17)|all_hematologic(139;0.182)		Epithelial(121;3.74e-22)|OV - Ovarian serous cystadenocarcinoma(60;5.3e-11)|Kidney(56;3.04e-09)|KIRC - Kidney renal clear cell carcinoma(57;6.5e-08)|BRCA - Breast invasive adenocarcinoma(100;0.000118)|Lung(119;0.0112)|LUSC - Lung squamous cell carcinoma(224;0.0266)		AGAAGATAATACGTCCCTAAA	0.373		NaN											0	0	0	0.000219431	0	14	38									
SOX12	6666	broad.mit.edu	37	20	306839	306839	+	Missense_Mutation	SNP	C	C	T			TCGA-DK-A2I1-01A-11D-A17V-08	TCGA-DK-A2I1-10A-01D-A17V-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f350676a-e308-42fe-8297-9d18ba7027b1	bba7b385-f707-4654-ba9e-cd3bbebf4859	g.chr20:306839C>T	uc002wdh.2	+	1	601	c.271C>T	c.(271-273)CGG>TGG	p.R91W		NM_006943	NP_008874	O15370	SOX12_HUMAN	SRY (sex determining region Y)-box 12	91	HMG box.				cell fate commitment|spinal cord development	nucleus	RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription|RNA polymerase II transcription coactivator activity|transcription regulatory region sequence-specific DNA binding				0		all_cancers(10;0.000331)|Lung NSC(37;0.0496)|all_lung(30;0.0831)|all_epithelial(17;0.0868)|Breast(17;0.231)	OV - Ovarian serous cystadenocarcinoma(29;0.149)			CCCGTTCGTGCGGGAGGCGGA	0.567		NaN											0	0	0	3.59834e-05	0	6	30									
IDH3B	3420	broad.mit.edu	37	20	2640192	2640192	+	Silent	SNP	C	C	T			TCGA-DK-A2I1-01A-11D-A17V-08	TCGA-DK-A2I1-10A-01D-A17V-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f350676a-e308-42fe-8297-9d18ba7027b1	bba7b385-f707-4654-ba9e-cd3bbebf4859	g.chr20:2640192C>T	uc002wgp.2	-	11	1059	c.1050G>A	c.(1048-1050)AAG>AAA	p.K350K	IDH3B_uc002wgq.2_Silent_p.K350K|IDH3B_uc002wgr.2_Silent_p.K198K	NM_006899	NP_008830	O43837	IDH3B_HUMAN	isocitrate dehydrogenase 3, beta subunit isoform	350					isocitrate metabolic process|tricarboxylic acid cycle	mitochondrial matrix	electron carrier activity|isocitrate dehydrogenase (NAD+) activity|magnesium ion binding|NAD binding				0					NADH(DB00157)	TGATCACCTTCTTCACCGCAT	0.507		NaN											0	0	0	0.000147903	0	64	367									
PROKR2	128674	broad.mit.edu	37	20	5282740	5282740	+	Silent	SNP	G	G	C			TCGA-DK-A2I1-01A-11D-A17V-08	TCGA-DK-A2I1-10A-01D-A17V-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f350676a-e308-42fe-8297-9d18ba7027b1	bba7b385-f707-4654-ba9e-cd3bbebf4859	g.chr20:5282740G>C	uc010zqw.1	-	2	1101	c.1101C>G	c.(1099-1101)CTC>CTG	p.L367L	PROKR2_uc010zqx.1_Silent_p.L367L|PROKR2_uc010zqy.1_Silent_p.L367L	NM_144773	NP_658986	Q8NFJ6	PKR2_HUMAN	prokineticin receptor 2	367	Cytoplasmic (Potential).					integral to membrane|plasma membrane	neuropeptide Y receptor activity			ovary(3)|central_nervous_system(1)|pancreas(1)	5						CGTTGGTTCTGAGGTCAAGGT	0.547		NaN								HNSCC(71;0.22)			0	0	0	0.00010058	0	11	56									
C20orf134	170487	broad.mit.edu	37	20	32255546	32255546	+	Silent	SNP	G	G	A			TCGA-DK-A2I1-01A-11D-A17V-08	TCGA-DK-A2I1-10A-01D-A17V-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f350676a-e308-42fe-8297-9d18ba7027b1	bba7b385-f707-4654-ba9e-cd3bbebf4859	g.chr20:32255546G>A	uc002wzt.2	+	1	1243	c.243G>A	c.(241-243)AAG>AAA	p.K81K	NECAB3_uc002wzm.3_Intron|NECAB3_uc002wzn.3_Intron|NECAB3_uc002wzo.3_Intron|NECAB3_uc002wzp.3_Intron|NECAB3_uc002wzq.3_Intron|NECAB3_uc002wzr.3_Intron|NECAB3_uc010geo.2_Intron	NM_001024675	NP_001019846	Q5JWF8	CT134_HUMAN	hypothetical protein LOC170487	81										pancreas(1)	1						CACATCTCAAGAAGCGCAGCT	0.672		NaN											0	0	0	0.000274275	0	6	32									
CEP250	11190	broad.mit.edu	37	20	34092575	34092576	+	Missense_Mutation	DNP	CC	CC	AA			TCGA-DK-A2I1-01A-11D-A17V-08	TCGA-DK-A2I1-10A-01D-A17V-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f350676a-e308-42fe-8297-9d18ba7027b1	bba7b385-f707-4654-ba9e-cd3bbebf4859	g.chr20:34092575_34092576CC>AA	uc002xcm.2	+	31	7049_7050	c.6378_6379CC>AA	c.(6376-6381)CCCCAC>CCAAAC	p.H2127N	CEP250_uc010zve.1_Missense_Mutation_p.H1495N	NM_007186	NP_009117	Q9BV73	CP250_HUMAN	centrosomal protein 2	2127	Gln/Glu-rich.|Potential.				centriole-centriole cohesion|G2/M transition of mitotic cell cycle|protein localization|regulation of centriole-centriole cohesion	centriole|cilium|cytosol|microtubule basal body|perinuclear region of cytoplasm|protein complex	protein C-terminus binding|protein kinase binding			ovary(4)|central_nervous_system(1)	5	Lung NSC(9;0.00156)|all_lung(11;0.00243)		BRCA - Breast invasive adenocarcinoma(18;0.0106)			AAGCCTTACCCCACAGCCACAA	0.54		NaN											0	0	0	6.4e-05	0	7	101									
ACOT8	10005	broad.mit.edu	37	20	44483824	44483824	+	Missense_Mutation	SNP	G	G	A			TCGA-DK-A2I1-01A-11D-A17V-08	TCGA-DK-A2I1-10A-01D-A17V-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f350676a-e308-42fe-8297-9d18ba7027b1	bba7b385-f707-4654-ba9e-cd3bbebf4859	g.chr20:44483824G>A	uc002xqa.1	-	2	317	c.236C>T	c.(235-237)TCC>TTC	p.S79F	ACOT8_uc010zxe.1_Missense_Mutation_p.S79F|ACOT8_uc002xqc.1_Intron|ACOT8_uc010zxf.1_Intron|ZSWIM3_uc002xqd.2_5'Flank|ZSWIM3_uc010zxg.1_5'Flank	NM_005469	NP_005460	O14734	ACOT8_HUMAN	peroxisomal acyl-CoA thioesterase 1 isoform a	79					bile acid biosynthetic process|fatty acid beta-oxidation using acyl-CoA oxidase|interspecies interaction between organisms|peroxisome organization	peroxisomal matrix	acetyl-CoA hydrolase activity|acyl-CoA thioesterase activity|carboxylesterase activity|choloyl-CoA hydrolase activity|protein binding			skin(1)	1		Myeloproliferative disorder(115;0.0122)				GCAGTGCAGGGAGTGCACGTG	0.617		NaN											0	0	0	0.000147903	0	53	41									
SLC12A5	57468	broad.mit.edu	37	20	44676624	44676624	+	Missense_Mutation	SNP	G	G	A			TCGA-DK-A2I1-01A-11D-A17V-08	TCGA-DK-A2I1-10A-01D-A17V-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f350676a-e308-42fe-8297-9d18ba7027b1	bba7b385-f707-4654-ba9e-cd3bbebf4859	g.chr20:44676624G>A	uc010zxl.1	+	16	2057	c.1981G>A	c.(1981-1983)GAG>AAG	p.E661K	SLC12A5_uc010zxm.1_RNA|SLC12A5_uc002xrb.2_Missense_Mutation_p.E638K	NM_001134771	NP_001128243	Q9H2X9	S12A5_HUMAN	solute carrier family 12 (potassium-chloride	661					potassium ion transport|sodium ion transport	integral to membrane	potassium:chloride symporter activity			ovary(2)|large_intestine(1)|central_nervous_system(1)|skin(1)	5		Myeloproliferative disorder(115;0.0122)			Bumetanide(DB00887)|Potassium Chloride(DB00761)	TCCCAGGGCAGAGAAGGAGTG	0.617		NaN											0	0	0	0.000157383	0	8	8									
PRIC285	85441	broad.mit.edu	37	20	62196310	62196310	+	Missense_Mutation	SNP	C	C	G			TCGA-DK-A2I1-01A-11D-A17V-08	TCGA-DK-A2I1-10A-01D-A17V-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f350676a-e308-42fe-8297-9d18ba7027b1	bba7b385-f707-4654-ba9e-cd3bbebf4859	g.chr20:62196310C>G	uc002yfm.2	-	9	4757	c.3865G>C	c.(3865-3867)GAG>CAG	p.E1289Q	PRIC285_uc002yfl.1_Missense_Mutation_p.E720Q	NM_001037335	NP_001032412	Q9BYK8	PR285_HUMAN	PPAR-alpha interacting complex protein 285	1289					cellular lipid metabolic process|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleoplasm	ATP binding|DNA binding|helicase activity|ribonuclease activity|RNA binding|transcription coactivator activity|zinc ion binding			central_nervous_system(2)	2	all_cancers(38;2.51e-11)|all_epithelial(29;8.27e-13)		Epithelial(9;1.27e-08)|all cancers(9;7.32e-08)|BRCA - Breast invasive adenocarcinoma(10;5.15e-06)			GTGCTGGCCTCAGGCAGCACC	0.672		NaN											0	0	0	0.000219431	0	14	14									
PRIC285	85441	broad.mit.edu	37	20	62196796	62196796	+	Missense_Mutation	SNP	C	C	T			TCGA-DK-A2I1-01A-11D-A17V-08	TCGA-DK-A2I1-10A-01D-A17V-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f350676a-e308-42fe-8297-9d18ba7027b1	bba7b385-f707-4654-ba9e-cd3bbebf4859	g.chr20:62196796C>T	uc002yfm.2	-	9	4271	c.3379G>A	c.(3379-3381)GAG>AAG	p.E1127K	PRIC285_uc002yfl.1_Missense_Mutation_p.E558K	NM_001037335	NP_001032412	Q9BYK8	PR285_HUMAN	PPAR-alpha interacting complex protein 285	1127					cellular lipid metabolic process|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleoplasm	ATP binding|DNA binding|helicase activity|ribonuclease activity|RNA binding|transcription coactivator activity|zinc ion binding			central_nervous_system(2)	2	all_cancers(38;2.51e-11)|all_epithelial(29;8.27e-13)		Epithelial(9;1.27e-08)|all cancers(9;7.32e-08)|BRCA - Breast invasive adenocarcinoma(10;5.15e-06)			CGGTACCGCTCGGGCTCCGCG	0.706		NaN											0	0	0	6.40141e-05	0	7	9									
PRIC285	85441	broad.mit.edu	37	20	62196802	62196802	+	Missense_Mutation	SNP	C	C	T			TCGA-DK-A2I1-01A-11D-A17V-08	TCGA-DK-A2I1-10A-01D-A17V-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f350676a-e308-42fe-8297-9d18ba7027b1	bba7b385-f707-4654-ba9e-cd3bbebf4859	g.chr20:62196802C>T	uc002yfm.2	-	9	4265	c.3373G>A	c.(3373-3375)GAG>AAG	p.E1125K	PRIC285_uc002yfl.1_Missense_Mutation_p.E556K	NM_001037335	NP_001032412	Q9BYK8	PR285_HUMAN	PPAR-alpha interacting complex protein 285	1125					cellular lipid metabolic process|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleoplasm	ATP binding|DNA binding|helicase activity|ribonuclease activity|RNA binding|transcription coactivator activity|zinc ion binding			central_nervous_system(2)	2	all_cancers(38;2.51e-11)|all_epithelial(29;8.27e-13)		Epithelial(9;1.27e-08)|all cancers(9;7.32e-08)|BRCA - Breast invasive adenocarcinoma(10;5.15e-06)			CGCTCGGGCTCCGCGTGCAGC	0.701		NaN											0	0	0	6.40141e-05	0	7	9									
NRIP1	8204	broad.mit.edu	37	21	16338775	16338776	+	Missense_Mutation	DNP	GG	GG	TT			TCGA-DK-A2I1-01A-11D-A17V-08	TCGA-DK-A2I1-10A-01D-A17V-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f350676a-e308-42fe-8297-9d18ba7027b1	bba7b385-f707-4654-ba9e-cd3bbebf4859	g.chr21:16338775_16338776GG>TT	uc002yjx.2	-	4	2336_2337	c.1738_1739CC>AA	c.(1738-1740)CCA>AAA	p.P580K		NM_003489	NP_003480	P48552	NRIP1_HUMAN	nuclear receptor interacting protein 1	580	Repression domain 2.				androgen receptor signaling pathway|negative regulation of transcription from RNA polymerase II promoter|positive regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent		androgen receptor binding|estrogen receptor binding|glucocorticoid receptor binding|transcription coactivator activity|transcription corepressor activity				0				Epithelial(23;1.19e-05)|all cancers(11;4.64e-05)|COAD - Colon adenocarcinoma(22;0.000232)|Colorectal(24;0.0006)|OV - Ovarian serous cystadenocarcinoma(11;0.00418)|Lung(58;0.199)|LUSC - Lung squamous cell carcinoma(23;0.24)		GACATATGGTGGGGAATTCCAT	0.45		NaN											0	0	0	6.4e-05	0	14	402									
KRTAP13-1	140258	broad.mit.edu	37	21	31768675	31768675	+	Missense_Mutation	SNP	C	C	G			TCGA-DK-A2I1-01A-11D-A17V-08	TCGA-DK-A2I1-10A-01D-A17V-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f350676a-e308-42fe-8297-9d18ba7027b1	bba7b385-f707-4654-ba9e-cd3bbebf4859	g.chr21:31768675C>G	uc002yoa.2	+	1	284	c.271C>G	c.(271-273)CCC>GCC	p.P91A		NM_181599	NP_853630	Q8IUC0	KR131_HUMAN	keratin associated protein 13-1	91	5 X 10 AA approximate repeats.					intermediate filament				ovary(1)	1						GCTCTGCAGTCCCTGCCAGAC	0.617		NaN											0	0	0	0.00010058	0	11	45									
GART	2618	broad.mit.edu	37	21	34883639	34883639	+	Missense_Mutation	SNP	T	T	C			TCGA-DK-A2I1-01A-11D-A17V-08	TCGA-DK-A2I1-10A-01D-A17V-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f350676a-e308-42fe-8297-9d18ba7027b1	bba7b385-f707-4654-ba9e-cd3bbebf4859	g.chr21:34883639T>C	uc002yrx.2	-	17	2369	c.2234A>G	c.(2233-2235)CAG>CGG	p.Q745R	GART_uc002yrz.2_Missense_Mutation_p.Q745R|GART_uc010gmd.2_Missense_Mutation_p.Q407R|GART_uc002yry.2_Missense_Mutation_p.Q745R	NM_000819	NP_000810	P22102	PUR2_HUMAN	phosphoribosylglycinamide formyltransferase,	745	AIRS.				'de novo' IMP biosynthetic process|purine base biosynthetic process	cytosol	ATP binding|metal ion binding|methyltransferase activity|phosphoribosylamine-glycine ligase activity|phosphoribosylformylglycinamidine cyclo-ligase activity|phosphoribosylglycinamide formyltransferase activity|protein binding			ovary(1)	1					Pemetrexed(DB00642)	CTGCTCTGTCTGCTCCTTTGA	0.512		NaN											0	0	0	0.000147903	0	124	236									
DSCAM	1826	broad.mit.edu	37	21	41505787	41505787	+	Missense_Mutation	SNP	C	C	G			TCGA-DK-A2I1-01A-11D-A17V-08	TCGA-DK-A2I1-10A-01D-A17V-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f350676a-e308-42fe-8297-9d18ba7027b1	bba7b385-f707-4654-ba9e-cd3bbebf4859	g.chr21:41505787C>G	uc002yyq.1	-	19	4008	c.3556G>C	c.(3556-3558)GAG>CAG	p.E1186Q	DSCAM_uc002yyr.1_RNA	NM_001389	NP_001380	O60469	DSCAM_HUMAN	Down syndrome cell adhesion molecule isoform	1186	Extracellular (Potential).				cell adhesion|dendrite self-avoidance|negative regulation of cell adhesion|positive regulation of axon extension involved in axon guidance|positive regulation of phosphorylation	axon|extracellular region|growth cone|integral to plasma membrane|membrane fraction	protein binding			ovary(6)|skin(4)|upper_aerodigestive_tract(1)	11		all_cancers(19;0.186)|Prostate(19;1.15e-05)|all_epithelial(19;0.0103)				TCACCATCCTCTTTGGTCCGG	0.597		NaN											0	0	0	7.07596e-05	0	17	95									
RRP1B	23076	broad.mit.edu	37	21	45104496	45104496	+	Silent	SNP	C	C	T			TCGA-DK-A2I1-01A-11D-A17V-08	TCGA-DK-A2I1-10A-01D-A17V-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f350676a-e308-42fe-8297-9d18ba7027b1	bba7b385-f707-4654-ba9e-cd3bbebf4859	g.chr21:45104496C>T	uc002zdk.2	+	10	1068	c.954C>T	c.(952-954)CAC>CAT	p.H318H	RRP1B_uc002zdl.2_5'Flank	NM_015056	NP_055871	Q14684	RRP1B_HUMAN	ribosomal RNA processing 1 homolog B	318					rRNA processing	cytosol|nucleolus|preribosome, small subunit precursor	protein binding			skin(1)	1				STAD - Stomach adenocarcinoma(101;0.178)		ACACGCCCCACTTCAACAGGA	0.483		NaN											0	0	0	9.7654e-05	0	18	80									
TRPM2	7226	broad.mit.edu	37	21	45795809	45795809	+	Missense_Mutation	SNP	G	G	C			TCGA-DK-A2I1-01A-11D-A17V-08	TCGA-DK-A2I1-10A-01D-A17V-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f350676a-e308-42fe-8297-9d18ba7027b1	bba7b385-f707-4654-ba9e-cd3bbebf4859	g.chr21:45795809G>C	uc002zet.1	+	7	1078	c.865G>C	c.(865-867)GAC>CAC	p.D289H	TRPM2_uc002zeu.1_Missense_Mutation_p.D289H|TRPM2_uc002zew.1_Missense_Mutation_p.D289H|TRPM2_uc010gpt.1_Missense_Mutation_p.D289H|TRPM2_uc002zex.1_Missense_Mutation_p.D75H	NM_003307	NP_003298	O94759	TRPM2_HUMAN	transient receptor potential cation channel,	289	Cytoplasmic (Potential).					integral to plasma membrane	ADP-ribose diphosphatase activity|calcium channel activity|sodium channel activity			ovary(1)|central_nervous_system(1)|pancreas(1)	3						CCTCGTGGACGACGGGACCCA	0.587		NaN											0	0	0	0.000132079	0	19	50									
MCM3AP	8888	broad.mit.edu	37	21	47693430	47693430	+	Missense_Mutation	SNP	C	C	T			TCGA-DK-A2I1-01A-11D-A17V-08	TCGA-DK-A2I1-10A-01D-A17V-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f350676a-e308-42fe-8297-9d18ba7027b1	bba7b385-f707-4654-ba9e-cd3bbebf4859	g.chr21:47693430C>T	uc002zir.1	-	7	2104	c.2068G>A	c.(2068-2070)GAG>AAG	p.E690K		NM_003906	NP_003897	O60318	MCM3A_HUMAN	minichromosome maintenance complex component 3	690					DNA replication|protein import into nucleus	cytosol|nucleus	DNA binding|nucleotide binding			large_intestine(2)|lung(1)|ovary(1)|skin(1)	5	Breast(49;0.112)					GGCCGCAGCTCGTGGGGCAGG	0.612		NaN											0	0	0	0.00047179	0	23	44									
PIWIL3	440822	broad.mit.edu	37	22	25131704	25131705	+	Missense_Mutation	DNP	GG	GG	TT			TCGA-DK-A2I1-01A-11D-A17V-08	TCGA-DK-A2I1-10A-01D-A17V-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f350676a-e308-42fe-8297-9d18ba7027b1	bba7b385-f707-4654-ba9e-cd3bbebf4859	g.chr22:25131704_25131705GG>TT	uc003abd.1	-	13	2021_2022	c.1604_1605CC>AA	c.(1603-1605)CCC>CAA	p.P535Q	PIWIL3_uc011ajx.1_Missense_Mutation_p.P426Q|PIWIL3_uc011ajy.1_Missense_Mutation_p.P426Q|PIWIL3_uc010gut.1_Missense_Mutation_p.P535Q	NM_001008496	NP_001008496	Q7Z3Z3	PIWL3_HUMAN	piwi-like 3	535					cell differentiation|gene silencing by RNA|meiosis|multicellular organismal development|regulation of translation|spermatogenesis	cytoplasm	RNA binding			ovary(3)|central_nervous_system(1)	4						TTATGCCCATGGGGGCTGTGAC	0.386		NaN											0	0	0	6.4e-05	0	8	234									
EIF4ENIF1	56478	broad.mit.edu	37	22	31859020	31859020	+	Nonsense_Mutation	SNP	G	G	A			TCGA-DK-A2I1-01A-11D-A17V-08	TCGA-DK-A2I1-10A-01D-A17V-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f350676a-e308-42fe-8297-9d18ba7027b1	bba7b385-f707-4654-ba9e-cd3bbebf4859	g.chr22:31859020G>A	uc003akz.1	-	6	849	c.685C>T	c.(685-687)CAG>TAG	p.Q229*	EIF4ENIF1_uc003ala.1_Nonsense_Mutation_p.Q229*|EIF4ENIF1_uc003alb.1_Intron	NM_019843	NP_062817	Q9NRA8	4ET_HUMAN	eukaryotic translation initiation factor 4E	229						nucleus	protein binding|protein transporter activity			ovary(1)	1						GTTTCAGACTGACTTGTGGGT	0.448		NaN											0	0	0	0.000566183	0	17	55									
SH3BP1	23616	broad.mit.edu	37	22	38061588	38061588	+	Nonsense_Mutation	SNP	G	G	T			TCGA-DK-A2I1-01A-11D-A17V-08	TCGA-DK-A2I1-10A-01D-A17V-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f350676a-e308-42fe-8297-9d18ba7027b1	bba7b385-f707-4654-ba9e-cd3bbebf4859	g.chr22:38061588G>T	uc003atj.1	+	17	2415	c.1528G>T	c.(1528-1530)GAG>TAG	p.E510*	PDXP_uc003atm.1_Nonsense_Mutation_p.E201*			Q9Y3L3	3BP1_HUMAN	SubName: Full=cDNA FLJ44925 fis, clone BRAMY3014613, highly similar to Homo sapiens SH3-domain binding protein 1 (SH3BP1);	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment					signal transduction	cytoplasm	GTPase activator activity|SH3 domain binding			central_nervous_system(1)	1	Melanoma(58;0.0574)					CGCTGCAGTGGAGACAGCCTC	0.662		NaN											1	0	2.0095e-06	8.12818e-05	3.15297e-05	7	24									
NPTXR	23467	broad.mit.edu	37	22	39218743	39218743	+	Silent	SNP	G	G	A			TCGA-DK-A2I1-01A-11D-A17V-08	TCGA-DK-A2I1-10A-01D-A17V-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f350676a-e308-42fe-8297-9d18ba7027b1	bba7b385-f707-4654-ba9e-cd3bbebf4859	g.chr22:39218743G>A	uc003awk.2	-	5	1528	c.1374C>T	c.(1372-1374)GTC>GTT	p.V458V		NM_014293	NP_055108	O95502	NPTXR_HUMAN	neuronal pentraxin receptor	458	Pentaxin.|Extracellular (Potential).					integral to membrane	metal ion binding			central_nervous_system(2)|skin(1)	3	Melanoma(58;0.04)					CAATGCCCAGGACCTGGGCTG	0.617		NaN											0	0	0	0.00024832	0	4	25									
GRAP2	9402	broad.mit.edu	37	22	40343185	40343185	+	Missense_Mutation	SNP	G	G	C			TCGA-DK-A2I1-01A-11D-A17V-08	TCGA-DK-A2I1-10A-01D-A17V-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f350676a-e308-42fe-8297-9d18ba7027b1	bba7b385-f707-4654-ba9e-cd3bbebf4859	g.chr22:40343185G>C	uc003ayh.1	+	2	338	c.75G>C	c.(73-75)TTG>TTC	p.L25F	GRAP2_uc003ayi.2_RNA|GRAP2_uc011aom.1_Intron|GRAP2_uc011aon.1_Intron|GRAP2_uc010gya.1_Missense_Mutation_p.L25F|GRAP2_uc011aoo.1_5'UTR|GRAP2_uc011aop.1_Missense_Mutation_p.L25F|GRAP2_uc011aoq.1_Intron|GRAP2_uc003ayj.1_Missense_Mutation_p.L25F	NM_004810	NP_004801	O75791	GRAP2_HUMAN	GRB2-related adaptor protein 2	25	SH3 1.				cell-cell signaling|Ras protein signal transduction|T cell costimulation|T cell receptor signaling pathway	cytosol	SH3/SH2 adaptor activity			upper_aerodigestive_tract(1)|central_nervous_system(1)	2						GAGATGTTTTGAAGGTAGGTG	0.483		NaN											0	0	0	0.000147903	0	55	70									
MCHR1	2847	broad.mit.edu	37	22	41077227	41077227	+	Silent	SNP	C	C	T			TCGA-DK-A2I1-01A-11D-A17V-08	TCGA-DK-A2I1-10A-01D-A17V-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f350676a-e308-42fe-8297-9d18ba7027b1	bba7b385-f707-4654-ba9e-cd3bbebf4859	g.chr22:41077227C>T	uc003ayz.2	+	2	832	c.564C>T	c.(562-564)ATC>ATT	p.I188I	MCHR1_uc003aza.2_Silent_p.I77I	NM_005297	NP_005288	Q99705	MCHR1_HUMAN	G protein-coupled receptor 24	188	Helical; Name=3; (Potential).				elevation of cytosolic calcium ion concentration|feeding behavior|generation of precursor metabolites and energy|inhibition of adenylate cyclase activity by G-protein signaling pathway	integral to plasma membrane|nonmotile primary cilium	neuropeptide receptor activity				0						GCACCCTCATCACGGCCATGG	0.572		NaN											0	0	0	0.000147903	0	47	49									
SCUBE1	80274	broad.mit.edu	37	22	43606163	43606163	+	Missense_Mutation	SNP	C	C	T			TCGA-DK-A2I1-01A-11D-A17V-08	TCGA-DK-A2I1-10A-01D-A17V-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f350676a-e308-42fe-8297-9d18ba7027b1	bba7b385-f707-4654-ba9e-cd3bbebf4859	g.chr22:43606163C>T	uc003bdt.1	-	19	2555	c.2467G>A	c.(2467-2469)GAA>AAA	p.E823K		NM_173050	NP_766638	Q8IWY4	SCUB1_HUMAN	signal peptide, CUB domain, EGF-like 1	823	CUB.				adult heart development|blood coagulation|endothelial cell differentiation|inflammatory response|post-embryonic development|protein homooligomerization	external side of plasma membrane|extracellular space|extrinsic to plasma membrane	calcium ion binding|identical protein binding|protein heterodimerization activity			central_nervous_system(2)|ovary(1)|lung(1)|skin(1)	5		all_neural(38;0.0414)|Ovarian(80;0.07)				CAGACGCATTCAGCGTTGGCT	0.627		NaN											0	0	0	0.000151284	0	14	19									
CHL1	10752	broad.mit.edu	37	3	440699	440699	+	Splice_Site	SNP	G	G	A			TCGA-DK-A2I1-01A-11D-A17V-08	TCGA-DK-A2I1-10A-01D-A17V-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f350676a-e308-42fe-8297-9d18ba7027b1	bba7b385-f707-4654-ba9e-cd3bbebf4859	g.chr3:440699G>A	uc003bou.2	+	25	3477	c.3206_splice	c.e25-1	p.E1069_splice	CHL1_uc003bot.2_Splice_Site_p.E1085_splice|CHL1_uc003bow.1_Splice_Site_p.E1069_splice|CHL1_uc011asi.1_Splice_Site_p.K1032_splice	NM_006614	NP_006605	O00533	CHL1_HUMAN	cell adhesion molecule with homology to L1CAM						axon guidance|cell adhesion|signal transduction	integral to membrane|plasma membrane|proteinaceous extracellular matrix				skin(5)|central_nervous_system(4)|large_intestine(2)|ovary(1)	12		all_cancers(2;1.14e-06)|all_epithelial(2;0.00367)|all_lung(1;0.061)|Lung NSC(2;0.201)		Epithelial(13;5.36e-06)|all cancers(10;1.4e-05)|OV - Ovarian serous cystadenocarcinoma(96;0.00323)|COAD - Colon adenocarcinoma(1;0.00925)|Colorectal(20;0.0198)		TTCTACCACAGAATATGCTGG	0.348		NaN											0	0	0	0.00010058	0	9	207									
THUMPD3	25917	broad.mit.edu	37	3	9424928	9424928	+	Silent	SNP	C	C	T			TCGA-DK-A2I1-01A-11D-A17V-08	TCGA-DK-A2I1-10A-01D-A17V-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f350676a-e308-42fe-8297-9d18ba7027b1	bba7b385-f707-4654-ba9e-cd3bbebf4859	g.chr3:9424928C>T	uc003bro.3	+	8	1318	c.1170C>T	c.(1168-1170)ATC>ATT	p.I390I	LOC440944_uc003brm.2_Intron|THUMPD3_uc003brn.3_Silent_p.I390I	NM_001114092	NP_001107564	Q9BV44	THUM3_HUMAN	THUMP domain containing 3	390							methyltransferase activity|protein binding|RNA binding			ovary(1)	1	Medulloblastoma(99;0.227)			OV - Ovarian serous cystadenocarcinoma(96;0.101)		AGTGGGATATCTGCAATCTGC	0.418		NaN											0	0	0	9.7654e-05	0	18	128									
TTLL3	26140	broad.mit.edu	37	3	9877038	9877038	+	Silent	SNP	C	C	T			TCGA-DK-A2I1-01A-11D-A17V-08	TCGA-DK-A2I1-10A-01D-A17V-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f350676a-e308-42fe-8297-9d18ba7027b1	bba7b385-f707-4654-ba9e-cd3bbebf4859	g.chr3:9877038C>T	uc003btg.2	+	13	2400	c.2184C>T	c.(2182-2184)CCC>CCT	p.P728P	ARPC4_uc003btc.1_Intron|TTLL3_uc003btd.3_3'UTR|TTLL3_uc003btf.3_3'UTR|TTLL3_uc003bth.3_3'UTR|TTLL3_uc011atj.1_3'UTR|TTLL3_uc003btj.3_3'UTR|TTLL3_uc003bti.3_3'UTR	NM_001025930	NP_001021100	Q9Y4R7	TTLL3_HUMAN	tubulin tyrosine ligase-like family, member 3	728					axoneme assembly|cilium assembly|protein polyglycylation	cilium axoneme|cytoplasm|microtubule	protein-glycine ligase activity, initiating|tubulin-tyrosine ligase activity			large_intestine(2)	2	Medulloblastoma(99;0.227)					TTCGATTCCCCACTGCCCTTG	0.552		NaN											0	0	0	0.000229342	0	23	78									
C3orf31	132001	broad.mit.edu	37	3	11880710	11880710	+	Nonsense_Mutation	SNP	G	G	A			TCGA-DK-A2I1-01A-11D-A17V-08	TCGA-DK-A2I1-10A-01D-A17V-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f350676a-e308-42fe-8297-9d18ba7027b1	bba7b385-f707-4654-ba9e-cd3bbebf4859	g.chr3:11880710G>A	uc003bwh.2	-	3	639	c.397C>T	c.(397-399)CGA>TGA	p.R133*	C3orf31_uc003bwj.2_Nonsense_Mutation_p.R133*|C3orf31_uc003bwi.2_RNA|C3orf31_uc011auo.1_Nonsense_Mutation_p.R133*|C3orf31_uc011aup.1_RNA|C3orf31_uc010hdy.1_RNA	NM_138807	NP_620162	Q96BW9	MMP37_HUMAN	MMP37-like protein, mitochondrial precursor	133					protein import into mitochondrial matrix	extrinsic to mitochondrial inner membrane					0						TTTTGGAGTCGTCCAGCAATG	0.229		NaN											0	0	0	0.000228196	0	35	54									
ZFYVE20	64145	broad.mit.edu	37	3	15115948	15115948	+	Missense_Mutation	SNP	G	G	A			TCGA-DK-A2I1-01A-11D-A17V-08	TCGA-DK-A2I1-10A-01D-A17V-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f350676a-e308-42fe-8297-9d18ba7027b1	bba7b385-f707-4654-ba9e-cd3bbebf4859	g.chr3:15115948G>A	uc003bzm.1	-	14	2310	c.1696C>T	c.(1696-1698)CGC>TGC	p.R566C	ZFYVE20_uc010hek.1_Missense_Mutation_p.R566C	NM_022340	NP_071735	Q9H1K0	RBNS5_HUMAN	FYVE-finger-containing Rab5 effector protein	566	Necessary for the interaction with EHD1.				blood coagulation|endosome transport|protein transport	early endosome membrane|plasma membrane	protein binding|zinc ion binding			skin(2)	2						AGGTGGGTGCGAGGCTCTCTG	0.567		NaN											0	0	0	0.000274275	0	9	32									
OSBPL10	114884	broad.mit.edu	37	3	31921292	31921292	+	Silent	SNP	G	G	A			TCGA-DK-A2I1-01A-11D-A17V-08	TCGA-DK-A2I1-10A-01D-A17V-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f350676a-e308-42fe-8297-9d18ba7027b1	bba7b385-f707-4654-ba9e-cd3bbebf4859	g.chr3:31921292G>A	uc003cev.2	-	3	693	c.312C>T	c.(310-312)ATC>ATT	p.I104I	OSBPL10_uc011axf.1_Silent_p.I104I	NM_017784	NP_060254	Q9BXB5	OSB10_HUMAN	oxysterol-binding protein-like protein 10	104	PH.				lipid transport		lipid binding			skin(1)	1				STAD - Stomach adenocarcinoma(1;0.00406)		AATACTGCAGGATGCCAGCCT	0.478		NaN											0	0	0	0.000442599	0	10	46									
NKTR	4820	broad.mit.edu	37	3	42678621	42678621	+	Missense_Mutation	SNP	G	G	C			TCGA-DK-A2I1-01A-11D-A17V-08	TCGA-DK-A2I1-10A-01D-A17V-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f350676a-e308-42fe-8297-9d18ba7027b1	bba7b385-f707-4654-ba9e-cd3bbebf4859	g.chr3:42678621G>C	uc003clo.2	+	13	1572	c.1425G>C	c.(1423-1425)ATG>ATC	p.M475I	NKTR_uc003clm.1_Missense_Mutation_p.M222I|NKTR_uc003clp.2_Missense_Mutation_p.M222I|NKTR_uc011azp.1_Intron|NKTR_uc003clq.1_Missense_Mutation_p.M365I|NKTR_uc003clr.1_Missense_Mutation_p.M222I|NKTR_uc003cls.2_Missense_Mutation_p.M175I	NM_005385	NP_005376	P30414	NKTR_HUMAN	natural killer-tumor recognition sequence	475	Arg/Ser-rich.				protein folding	membrane	cyclosporin A binding|peptidyl-prolyl cis-trans isomerase activity			ovary(2)|skin(1)	3				KIRC - Kidney renal clear cell carcinoma(284;0.24)		CTCGAAGAATGAAATCCTCTT	0.393		NaN											0	0	0	0.000229342	0	19	67									
TDGF1	6997	broad.mit.edu	37	3	46621544	46621544	+	Missense_Mutation	SNP	G	G	A			TCGA-DK-A2I1-01A-11D-A17V-08	TCGA-DK-A2I1-10A-01D-A17V-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f350676a-e308-42fe-8297-9d18ba7027b1	bba7b385-f707-4654-ba9e-cd3bbebf4859	g.chr3:46621544G>A	uc003cpv.2	+	5	722	c.442G>A	c.(442-444)GGC>AGC	p.G148S	LRRC2_uc003cpu.3_5'UTR	NM_003212	NP_003203	P13385	TDGF1_HUMAN	teratocarcinoma-derived growth factor 1	148					activation of MAPK activity|anterior/posterior axis specification, embryo|mammary gland development|morphogenesis of a branching structure|negative regulation of apoptosis|peptidyl-serine phosphorylation|positive regulation of cell migration|positive regulation of peptidyl-tyrosine phosphorylation	anchored to membrane|cell surface|extrinsic to plasma membrane	growth factor activity				0				BRCA - Breast invasive adenocarcinoma(193;0.00114)|KIRC - Kidney renal clear cell carcinoma(197;0.0173)|Kidney(197;0.0204)		ATTTCTACCCGGCTGTGGTAA	0.547		NaN											0	0	0	0.000184323	0	24	37									
SHISA5	51246	broad.mit.edu	37	3	48510922	48510922	+	Nonsense_Mutation	SNP	G	G	A			TCGA-DK-A2I1-01A-11D-A17V-08	TCGA-DK-A2I1-10A-01D-A17V-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f350676a-e308-42fe-8297-9d18ba7027b1	bba7b385-f707-4654-ba9e-cd3bbebf4859	g.chr3:48510922G>A	uc003ctp.1	-	5	615	c.481C>T	c.(481-483)CAG>TAG	p.Q161*	SHISA5_uc003ctn.1_Missense_Mutation_p.S29L|SHISA5_uc003ctm.1_Nonsense_Mutation_p.Q58*|SHISA5_uc011bbk.1_Missense_Mutation_p.S69L|SHISA5_uc003cto.1_Nonsense_Mutation_p.Q130*|SHISA5_uc003ctq.1_Nonsense_Mutation_p.Q154*|SHISA5_uc003ctr.1_Nonsense_Mutation_p.Q130*|SHISA5_uc003cts.1_Nonsense_Mutation_p.Q130*|SHISA5_uc003ctt.2_Nonsense_Mutation_p.Q58*|SHISA5_uc003ctu.1_RNA|SHISA5_uc011bbl.1_Nonsense_Mutation_p.Q59*	NM_016479	NP_057563	Q8N114	SHSA5_HUMAN	scotin precursor	161	Cytoplasmic (Potential).|Pro-rich.				apoptosis|positive regulation of I-kappaB kinase/NF-kappaB cascade	endoplasmic reticulum membrane|integral to membrane|nuclear membrane	signal transducer activity|WW domain binding				0						CTTGGAGGCTGAGGATAAGGG	0.602		NaN											0	0	0	0.000157383	0	7	39									
RHOA	387	broad.mit.edu	37	3	49405951	49405951	+	Missense_Mutation	SNP	G	G	T			TCGA-DK-A2I1-01A-11D-A17V-08	TCGA-DK-A2I1-10A-01D-A17V-08			G	T	G	G		Valid	Somatic	Phase_I	WXS	Fluidigm;RNASeq			Illumina GAIIx	f350676a-e308-42fe-8297-9d18ba7027b1	bba7b385-f707-4654-ba9e-cd3bbebf4859	g.chr3:49405951G>T	uc003cwu.2	-	3	463	c.187C>A	c.(187-189)CAG>AAG	p.Q63K	RHOA_uc010hku.2_5'UTR	NM_001664	NP_001655	P61586	RHOA_HUMAN	ras homolog gene family, member A precursor	63	GTP (By similarity).			Q->L: Causes constitutive activation.	axon guidance|interspecies interaction between organisms|negative regulation of axonogenesis|nerve growth factor receptor signaling pathway|phosphatidylinositol-mediated signaling|platelet activation|positive regulation of axonogenesis|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of neuron differentiation|positive regulation of NF-kappaB import into nucleus|positive regulation of stress fiber assembly|regulation of cell migration|regulation of small GTPase mediated signal transduction|Rho protein signal transduction|spindle assembly involved in mitosis	cytoskeleton|cytosol|plasma membrane	GTP binding|GTPase activity|myosin binding			ovary(2)	2				BRCA - Breast invasive adenocarcinoma(193;8.58e-05)|Kidney(197;0.0023)|KIRC - Kidney renal clear cell carcinoma(197;0.00258)	Atorvastatin(DB01076)|Simvastatin(DB00641)	TAATCTTCCTGCCCAGCTGTG	0.483		NaN											1	0	2.79863e-10	9.22233e-05	4.48025e-09	24	93									
SEMA3G	56920	broad.mit.edu	37	3	52473745	52473745	+	Missense_Mutation	SNP	C	C	T			TCGA-DK-A2I1-01A-11D-A17V-08	TCGA-DK-A2I1-10A-01D-A17V-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f350676a-e308-42fe-8297-9d18ba7027b1	bba7b385-f707-4654-ba9e-cd3bbebf4859	g.chr3:52473745C>T	uc003dea.1	-	12	1418	c.1418G>A	c.(1417-1419)GGC>GAC	p.G473D		NM_020163	NP_064548	Q9NS98	SEM3G_HUMAN	semaphorin sem2 precursor	473	Sema.				multicellular organismal development	extracellular region|membrane	receptor activity			ovary(2)	2				BRCA - Breast invasive adenocarcinoma(193;1.69e-05)|Kidney(197;0.00173)|KIRC - Kidney renal clear cell carcinoma(197;0.00196)|OV - Ovarian serous cystadenocarcinoma(275;0.0333)		TTCAGCTGAGCCCCCTGCCTG	0.622		NaN											0	0	0	0.000157383	0	7	19									
NT5DC2	64943	broad.mit.edu	37	3	52558849	52558849	+	Missense_Mutation	SNP	C	C	T			TCGA-DK-A2I1-01A-11D-A17V-08	TCGA-DK-A2I1-10A-01D-A17V-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f350676a-e308-42fe-8297-9d18ba7027b1	bba7b385-f707-4654-ba9e-cd3bbebf4859	g.chr3:52558849C>T	uc003deo.2	-	13	1709	c.1285G>A	c.(1285-1287)GAG>AAG	p.E429K	NT5DC2_uc003dem.2_Missense_Mutation_p.E299K|NT5DC2_uc003den.2_Missense_Mutation_p.E466K|NT5DC2_uc010hmi.2_Missense_Mutation_p.E441K|NT5DC2_uc010hmj.2_Missense_Mutation_p.E245K	NM_022908	NP_075059	Q9H857	NT5D2_HUMAN	5'-nucleotidase domain containing 2 isoform 2	429							hydrolase activity|metal ion binding				0				BRCA - Breast invasive adenocarcinoma(193;1.7e-05)|Kidney(197;0.00177)|KIRC - Kidney renal clear cell carcinoma(197;0.002)|OV - Ovarian serous cystadenocarcinoma(275;0.0476)		TCCTGCCGCTCTTTCATCCAG	0.657		NaN											0	0	0	0.000274275	0	9	31									
CACNA1D	776	broad.mit.edu	37	3	53804028	53804028	+	Missense_Mutation	SNP	C	C	A			TCGA-DK-A2I1-01A-11D-A17V-08	TCGA-DK-A2I1-10A-01D-A17V-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f350676a-e308-42fe-8297-9d18ba7027b1	bba7b385-f707-4654-ba9e-cd3bbebf4859	g.chr3:53804028C>A	uc003dgv.3	+	31	4062	c.3899C>A	c.(3898-3900)CCA>CAA	p.P1300Q	CACNA1D_uc003dgu.3_Missense_Mutation_p.P1320Q|CACNA1D_uc003dgy.3_Intron|CACNA1D_uc003dgw.3_Missense_Mutation_p.P967Q|CACNA1D_uc003dgx.1_Missense_Mutation_p.P476Q	NM_001128840	NP_001122312	Q01668	CAC1D_HUMAN	calcium channel, voltage-dependent, L type,	1300	Extracellular (Potential).|IV.				axon guidance|energy reserve metabolic process|regulation of insulin secretion	voltage-gated calcium channel complex	voltage-gated calcium channel activity			ovary(6)|upper_aerodigestive_tract(2)|liver(1)|central_nervous_system(1)|skin(1)	11				BRCA - Breast invasive adenocarcinoma(193;0.00029)|KIRC - Kidney renal clear cell carcinoma(284;0.0145)|Kidney(284;0.0175)|OV - Ovarian serous cystadenocarcinoma(275;0.0613)	Verapamil(DB00661)	GTCCCTGTCCCAACTGCTACA	0.438		NaN											1	0	2.17888e-05	0.000442599	0.000339942	8	228									
PHLDB2	90102	broad.mit.edu	37	3	111603142	111603142	+	Missense_Mutation	SNP	C	C	T			TCGA-DK-A2I1-01A-11D-A17V-08	TCGA-DK-A2I1-10A-01D-A17V-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f350676a-e308-42fe-8297-9d18ba7027b1	bba7b385-f707-4654-ba9e-cd3bbebf4859	g.chr3:111603142C>T	uc010hqa.2	+	2	629	c.218C>T	c.(217-219)TCT>TTT	p.S73F	PHLDB2_uc003dyc.2_Missense_Mutation_p.S100F|PHLDB2_uc003dyd.2_Missense_Mutation_p.S73F|PHLDB2_uc003dyg.2_Missense_Mutation_p.S73F|PHLDB2_uc003dyh.2_Missense_Mutation_p.S73F|PHLDB2_uc003dye.3_Missense_Mutation_p.S73F|PHLDB2_uc003dyf.3_Missense_Mutation_p.S73F	NM_001134438	NP_001127910	Q86SQ0	PHLB2_HUMAN	pleckstrin homology-like domain, family B,	73						cytoplasm|intermediate filament cytoskeleton|plasma membrane				ovary(4)|skin(2)	6						AGAAGCCCTTCTCCTTTGGGA	0.443		NaN											0	0	0	0.000147903	0	131	301									
WDR52	55779	broad.mit.edu	37	3	113114608	113114608	+	Missense_Mutation	SNP	G	G	C			TCGA-DK-A2I1-01A-11D-A17V-08	TCGA-DK-A2I1-10A-01D-A17V-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f350676a-e308-42fe-8297-9d18ba7027b1	bba7b385-f707-4654-ba9e-cd3bbebf4859	g.chr3:113114608G>C	uc003eae.1	-	15	1925	c.1879C>G	c.(1879-1881)CCC>GCC	p.P627A		NM_018338	NP_060808	Q96MT7	WDR52_HUMAN	WD repeat domain 52 isoform 2	627										central_nervous_system(1)	1						TGAGACATGGGAGACCACATT	0.343		NaN											0	0	0	0.000339439	0	29	104									
ATP6V1A	523	broad.mit.edu	37	3	113505209	113505209	+	Missense_Mutation	SNP	G	G	C			TCGA-DK-A2I1-01A-11D-A17V-08	TCGA-DK-A2I1-10A-01D-A17V-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f350676a-e308-42fe-8297-9d18ba7027b1	bba7b385-f707-4654-ba9e-cd3bbebf4859	g.chr3:113505209G>C	uc003eao.2	+	6	761	c.695G>C	c.(694-696)AGA>ACA	p.R232T	ATP6V1A_uc011bik.1_Missense_Mutation_p.R199T	NM_001690	NP_001681	P38606	VATA_HUMAN	ATPase, H+ transporting, lysosomal V1 subunit A	232					ATP hydrolysis coupled proton transport|cellular iron ion homeostasis|insulin receptor signaling pathway|transferrin transport	cytosol|integral to plasma membrane|proton-transporting V-type ATPase, V1 domain	ATP binding|hydrogen ion transporting ATP synthase activity, rotational mechanism|proton-transporting ATPase activity, rotational mechanism			ovary(2)|skin(1)	3						ACTGGCCAGAGAGTCCTTGAT	0.428		NaN											0	0	0	0.000147903	0	168	184									
GPR156	165829	broad.mit.edu	37	3	119886885	119886885	+	Missense_Mutation	SNP	G	G	T			TCGA-DK-A2I1-01A-11D-A17V-08	TCGA-DK-A2I1-10A-01D-A17V-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f350676a-e308-42fe-8297-9d18ba7027b1	bba7b385-f707-4654-ba9e-cd3bbebf4859	g.chr3:119886885G>T	uc011bjf.1	-	9	1439	c.1439C>A	c.(1438-1440)TCT>TAT	p.S480Y	GPR156_uc011bjg.1_Missense_Mutation_p.S476Y	NM_153002	NP_694547	Q8NFN8	GP156_HUMAN	G protein-coupled receptor 156	480	Cytoplasmic (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity|GABA-B receptor activity			ovary(1)|skin(1)	2				GBM - Glioblastoma multiforme(114;0.19)		TAAATGATCAGAAAAGTCTTT	0.532		NaN											1	0	4.4004e-07	0.00047179	6.94383e-06	25	135									
NDUFB4	4710	broad.mit.edu	37	3	120315335	120315335	+	Silent	SNP	G	G	A			TCGA-DK-A2I1-01A-11D-A17V-08	TCGA-DK-A2I1-10A-01D-A17V-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f350676a-e308-42fe-8297-9d18ba7027b1	bba7b385-f707-4654-ba9e-cd3bbebf4859	g.chr3:120315335G>A	uc003edu.2	+	1	208	c.129G>A	c.(127-129)CTG>CTA	p.L43L	NDUFB4_uc003edt.2_Silent_p.L43L	NM_004547	NP_004538	O95168	NDUB4_HUMAN	NADH dehydrogenase (ubiquinone) 1 beta	43					mitochondrial electron transport, NADH to ubiquinone|response to oxidative stress|transport	integral to membrane|mitochondrial respiratory chain complex I	NADH dehydrogenase (ubiquinone) activity				0				GBM - Glioblastoma multiforme(114;0.14)	NADH(DB00157)	GAGCCCAGCTGAAACGAGAGT	0.632		NaN											0	0	0	0.000184323	0	24	23									
XRN1	54464	broad.mit.edu	37	3	142122729	142122729	+	Silent	SNP	C	C	T			TCGA-DK-A2I1-01A-11D-A17V-08	TCGA-DK-A2I1-10A-01D-A17V-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f350676a-e308-42fe-8297-9d18ba7027b1	bba7b385-f707-4654-ba9e-cd3bbebf4859	g.chr3:142122729C>T	uc003eus.2	-	17	2053	c.1986G>A	c.(1984-1986)CTG>CTA	p.L662L	XRN1_uc010huu.2_Silent_p.L128L|XRN1_uc003eut.2_Silent_p.L662L|XRN1_uc003euu.2_Silent_p.L662L|XRN1_uc003euv.1_Silent_p.L523L	NM_019001	NP_061874	Q8IZH2	XRN1_HUMAN	5'-3' exoribonuclease 1 isoform a	662					exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay|histone mRNA catabolic process|nuclear mRNA surveillance|rRNA catabolic process	cytosol|Golgi apparatus|intermediate filament cytoskeleton|plasma membrane	5'-3' exonuclease activity|DNA binding|protein binding|RNA binding			ovary(3)	3						TGATGTGTTTCAGAGTAGGAA	0.289		NaN											0	0	0	0.000586117	0	22	177									
LXN	56925	broad.mit.edu	37	3	158386887	158386887	+	Silent	SNP	G	G	A			TCGA-DK-A2I1-01A-11D-A17V-08	TCGA-DK-A2I1-10A-01D-A17V-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f350676a-e308-42fe-8297-9d18ba7027b1	bba7b385-f707-4654-ba9e-cd3bbebf4859	g.chr3:158386887G>A	uc003fch.2	-	4	620	c.405C>T	c.(403-405)CTC>CTT	p.L135L	GFM1_uc003fcd.2_Intron|GFM1_uc003fce.2_Intron|GFM1_uc003fcf.2_Intron|GFM1_uc003fcg.2_Intron|LXN_uc011bov.1_Silent_p.L135L	NM_020169	NP_064554	Q9BS40	LXN_HUMAN	latexin	135						cytoplasm	metalloendopeptidase inhibitor activity|protein binding				0			Lung(72;0.00309)|LUSC - Lung squamous cell carcinoma(72;0.0043)			AATGTAGAACGAGCGTCATTT	0.313		NaN											0	0	0	0.000175454	0	20	126									
PLD1	5337	broad.mit.edu	37	3	171455826	171455826	+	Missense_Mutation	SNP	C	C	T			TCGA-DK-A2I1-01A-11D-A17V-08	TCGA-DK-A2I1-10A-01D-A17V-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f350676a-e308-42fe-8297-9d18ba7027b1	bba7b385-f707-4654-ba9e-cd3bbebf4859	g.chr3:171455826C>T	uc003fhs.2	-	2	132	c.16G>A	c.(16-18)GAG>AAG	p.E6K	PLD1_uc003fht.2_Missense_Mutation_p.E6K	NM_002662	NP_002653	Q13393	PLD1_HUMAN	phospholipase D1 isoform a	6					cell communication|chemotaxis|Ras protein signal transduction	endoplasmic reticulum membrane|Golgi membrane|late endosome membrane|perinuclear region of cytoplasm	NAPE-specific phospholipase D activity|phosphatidylinositol binding|phospholipase D activity			ovary(2)|lung(1)	3	all_cancers(22;4.53e-19)|Ovarian(172;0.00197)|Breast(254;0.186)		LUSC - Lung squamous cell carcinoma(14;3.57e-14)|Lung(28;9.39e-14)		Choline(DB00122)	ACCCGTGGCTCGTTTTTCAGT	0.413		NaN											0	0	0	0.000566183	0	16	75									
GAK	2580	broad.mit.edu	37	4	845581	845581	+	Silent	SNP	C	C	T			TCGA-DK-A2I1-01A-11D-A17V-08	TCGA-DK-A2I1-10A-01D-A17V-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f350676a-e308-42fe-8297-9d18ba7027b1	bba7b385-f707-4654-ba9e-cd3bbebf4859	g.chr4:845581C>T	uc003gbm.3	-	25	3664	c.3465G>A	c.(3463-3465)GTG>GTA	p.V1155V	GAK_uc003gbn.3_Silent_p.V1076V|GAK_uc003gbk.3_5'UTR|GAK_uc010ibi.2_Silent_p.V380V|GAK_uc010ibj.2_RNA|GAK_uc003gbl.3_Silent_p.V1008V	NM_005255	NP_005246	O14976	GAK_HUMAN	cyclin G associated kinase	1155					cell cycle	focal adhesion|Golgi apparatus|perinuclear region of cytoplasm	ATP binding|heat shock protein binding|protein serine/threonine kinase activity			lung(2)|central_nervous_system(1)|skin(1)	4				Colorectal(103;0.219)		GCGCCCCGATCACACTGAAGT	0.657		NaN											0	0	0	0.00010058	0	10	28									
ADD1	118	broad.mit.edu	37	4	2916622	2916622	+	Silent	SNP	G	G	C			TCGA-DK-A2I1-01A-11D-A17V-08	TCGA-DK-A2I1-10A-01D-A17V-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f350676a-e308-42fe-8297-9d18ba7027b1	bba7b385-f707-4654-ba9e-cd3bbebf4859	g.chr4:2916622G>C	uc003gfr.2	+	13	1805	c.1617G>C	c.(1615-1617)GTG>GTC	p.V539V	ADD1_uc003gfn.2_Intron|ADD1_uc003gfo.2_Silent_p.V570V|ADD1_uc003gfp.2_Silent_p.V539V|ADD1_uc003gfq.2_Silent_p.V570V|ADD1_uc003gfs.2_Silent_p.V570V	NM_001119	NP_001110	P35611	ADDA_HUMAN	adducin 1 (alpha) isoform a	539					actin filament bundle assembly|barbed-end actin filament capping|cellular component disassembly involved in apoptosis|positive regulation of protein binding	cytosol|F-actin capping protein complex|nucleus|plasma membrane	actin filament binding|calmodulin binding|metal ion binding|protein heterodimerization activity|protein homodimerization activity|spectrin binding|transcription factor binding			ovary(1)	1				UCEC - Uterine corpus endometrioid carcinoma (64;0.168)		GAGAGCTGGTGACGGCCTCCA	0.647		NaN											0	0	0	6.4e-05	0	3	78									
KCNIP4	80333	broad.mit.edu	37	4	20734378	20734378	+	Missense_Mutation	SNP	C	C	T			TCGA-DK-A2I1-01A-11D-A17V-08	TCGA-DK-A2I1-10A-01D-A17V-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f350676a-e308-42fe-8297-9d18ba7027b1	bba7b385-f707-4654-ba9e-cd3bbebf4859	g.chr4:20734378C>T	uc003gqe.2	-	6	601	c.517G>A	c.(517-519)GAT>AAT	p.D173N	KCNIP4_uc003gqf.1_Missense_Mutation_p.D169N|KCNIP4_uc003gqg.1_Missense_Mutation_p.D128N|KCNIP4_uc003gqh.1_Missense_Mutation_p.D165N|KCNIP4_uc003gqi.1_Missense_Mutation_p.D128N|PACRGL_uc003gpu.2_Intron|PACRGL_uc003gpx.3_Intron|PACRGL_uc003gpw.2_Intron|KCNIP4_uc010iel.2_Missense_Mutation_p.D170N|KCNIP4_uc003gqd.3_Missense_Mutation_p.D153N	NM_147182	NP_671711	Q6PIL6	KCIP4_HUMAN	Kv channel interacting protein 4 isoform 3	190	EF-hand 3.					plasma membrane	calcium ion binding|potassium channel activity|protein binding|voltage-gated ion channel activity				0		Breast(46;0.134)				CCCATCATATCGTATATTGCT	0.378		NaN											0	0	0	7.07596e-05	0	17	44									
EXOC1	55763	broad.mit.edu	37	4	56768579	56768579	+	Missense_Mutation	SNP	G	G	A			TCGA-DK-A2I1-01A-11D-A17V-08	TCGA-DK-A2I1-10A-01D-A17V-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f350676a-e308-42fe-8297-9d18ba7027b1	bba7b385-f707-4654-ba9e-cd3bbebf4859	g.chr4:56768579G>A	uc003hbe.1	+	18	2565	c.2407G>A	c.(2407-2409)GCA>ACA	p.A803T	EXOC1_uc003hbf.1_Missense_Mutation_p.A803T|EXOC1_uc003hbg.1_Missense_Mutation_p.A788T	NM_018261	NP_060731	Q9NV70	EXOC1_HUMAN	exocyst complex component 1 isoform 1	803					exocytosis|protein transport	exocyst	protein binding			ovary(2)|skin(2)|lung(1)|central_nervous_system(1)	6	Glioma(25;0.08)|all_neural(26;0.101)					TTACCAACTTGCATTTAACAA	0.378		NaN											0	0	0	0.000295444	0	22	53									
EPHA5	2044	broad.mit.edu	37	4	66361157	66361157	+	Missense_Mutation	SNP	C	C	T			TCGA-DK-A2I1-01A-11D-A17V-08	TCGA-DK-A2I1-10A-01D-A17V-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f350676a-e308-42fe-8297-9d18ba7027b1	bba7b385-f707-4654-ba9e-cd3bbebf4859	g.chr4:66361157C>T	uc003hcy.2	-	4	1208	c.1015G>A	c.(1015-1017)GAA>AAA	p.E339K	EPHA5_uc003hcx.2_Missense_Mutation_p.E270K|EPHA5_uc003hcz.2_Missense_Mutation_p.E339K|EPHA5_uc011cah.1_Missense_Mutation_p.E339K|EPHA5_uc011cai.1_Missense_Mutation_p.E339K|EPHA5_uc003hda.2_Missense_Mutation_p.E339K	NM_004439	NP_004430	P54756	EPHA5_HUMAN	ephrin receptor EphA5 isoform a precursor	339	Extracellular (Potential).|Cys-rich.				cAMP-mediated signaling|neuron development	dendrite|external side of plasma membrane|integral to plasma membrane|neuronal cell body|perinuclear region of cytoplasm|rough endoplasmic reticulum	ATP binding|transmembrane-ephrin receptor activity			lung(19)|stomach(2)|ovary(2)|central_nervous_system(1)	24						TAATCCTTTTCACAGACACAA	0.468		NaN								TSP Lung(17;0.13)			0	0	0	6.40141e-05	0	12	131									
SEPT11	55752	broad.mit.edu	37	4	77926942	77926942	+	Missense_Mutation	SNP	G	G	A			TCGA-DK-A2I1-01A-11D-A17V-08	TCGA-DK-A2I1-10A-01D-A17V-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f350676a-e308-42fe-8297-9d18ba7027b1	bba7b385-f707-4654-ba9e-cd3bbebf4859	g.chr4:77926942G>A	uc003hkj.2	+	3	493	c.331G>A	c.(331-333)GAT>AAT	p.D111N	SEPT11_uc010ijh.1_Missense_Mutation_p.D103N|SEPT11_uc011cca.1_Missense_Mutation_p.D121N	NM_018243	NP_060713	Q9NVA2	SEP11_HUMAN	septin 11	111					cell cycle|cell division|protein heterooligomerization	axon|cell junction|dendritic spine|septin complex|stress fiber|synapse	GTP binding|protein binding				0						GATAAATAAAGATGACAGGTA	0.423		NaN											0	0	0	0.000175454	0	20	56									
ARHGAP24	83478	broad.mit.edu	37	4	86915953	86915953	+	Silent	SNP	C	C	A			TCGA-DK-A2I1-01A-11D-A17V-08	TCGA-DK-A2I1-10A-01D-A17V-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f350676a-e308-42fe-8297-9d18ba7027b1	bba7b385-f707-4654-ba9e-cd3bbebf4859	g.chr4:86915953C>A	uc003hpk.2	+	9	1595	c.1146C>A	c.(1144-1146)CCC>CCA	p.P382P	ARHGAP24_uc003hpl.2_Silent_p.P287P|ARHGAP24_uc010ikf.2_Silent_p.P297P|ARHGAP24_uc003hpm.2_Silent_p.P289P	NM_001025616	NP_001020787	Q8N264	RHG24_HUMAN	Rho GTPase activating protein 24 isoform 1	382					angiogenesis|cell differentiation|regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cell projection|cytoskeleton|cytosol|focal adhesion	GTPase activator activity|protein binding				0		Hepatocellular(203;0.114)|all_hematologic(202;0.21)|Acute lymphoblastic leukemia(40;0.242)		OV - Ovarian serous cystadenocarcinoma(123;0.000571)		CTGAGTCACCCCAGAGAAGCA	0.502		NaN											1	0	1.56989e-16	0.000147903	2.58051e-15	53	88									
RAP1GDS1	5910	broad.mit.edu	37	4	99363176	99363176	+	Missense_Mutation	SNP	C	C	G			TCGA-DK-A2I1-01A-11D-A17V-08	TCGA-DK-A2I1-10A-01D-A17V-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f350676a-e308-42fe-8297-9d18ba7027b1	bba7b385-f707-4654-ba9e-cd3bbebf4859	g.chr4:99363176C>G	uc003htx.3	+	15	1922	c.1732C>G	c.(1732-1734)CTA>GTA	p.L578V	RAP1GDS1_uc003htw.3_Missense_Mutation_p.L579V|RAP1GDS1_uc003htv.3_Missense_Mutation_p.L578V|RAP1GDS1_uc003htz.3_Missense_Mutation_p.L529V|RAP1GDS1_uc003hty.3_Missense_Mutation_p.L530V|RAP1GDS1_uc003hua.3_Missense_Mutation_p.L487V	NM_001100427	NP_001093897	P52306	GDS1_HUMAN	RAP1, GTP-GDP dissociation stimulator 1 isoform	578							binding|GTPase activator activity			ovary(1)|lung(1)|breast(1)	3				OV - Ovarian serous cystadenocarcinoma(123;2.9e-07)|LUSC - Lung squamous cell carcinoma(1;0.0253)|Lung(1;0.0576)		TTTGGCTTTTCTAGATGTCGT	0.408		NaN	T	NUP98	T-ALL								0	0	0	7.07596e-05	0	16	33									
CENPE	1062	broad.mit.edu	37	4	104070087	104070087	+	Nonsense_Mutation	SNP	C	C	A			TCGA-DK-A2I1-01A-11D-A17V-08	TCGA-DK-A2I1-10A-01D-A17V-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f350676a-e308-42fe-8297-9d18ba7027b1	bba7b385-f707-4654-ba9e-cd3bbebf4859	g.chr4:104070087C>A	uc003hxb.1	-	28	3847	c.3757G>T	c.(3757-3759)GAA>TAA	p.E1253*	CENPE_uc003hxc.1_Nonsense_Mutation_p.E1228*	NM_001813	NP_001804	Q02224	CENPE_HUMAN	centromere protein E	1253	Potential.				blood coagulation|cell division|kinetochore assembly|microtubule-based movement|mitotic chromosome movement towards spindle pole|mitotic metaphase|mitotic metaphase plate congression|mitotic prometaphase|multicellular organismal development|positive regulation of protein kinase activity	condensed chromosome kinetochore|cytosol|microtubule|nucleus|spindle	ATP binding|kinetochore binding|microtubule motor activity			ovary(5)|breast(4)	9				OV - Ovarian serous cystadenocarcinoma(123;2.95e-08)		CTTCTTAGTTCATCAATAGTT	0.323		NaN											1	0	3.57733e-08	0.000279167	5.69383e-07	31	71									
TRPC3	7222	broad.mit.edu	37	4	122828620	122828620	+	Missense_Mutation	SNP	G	G	T			TCGA-DK-A2I1-01A-11D-A17V-08	TCGA-DK-A2I1-10A-01D-A17V-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f350676a-e308-42fe-8297-9d18ba7027b1	bba7b385-f707-4654-ba9e-cd3bbebf4859	g.chr4:122828620G>T	uc003ieg.2	-	7	1969	c.1895C>A	c.(1894-1896)GCA>GAA	p.A632E	TRPC3_uc010inr.2_Missense_Mutation_p.A504E|TRPC3_uc003ief.2_Missense_Mutation_p.A559E|TRPC3_uc011cgl.1_Missense_Mutation_p.A296E	NM_001130698	NP_001124170	Q13507	TRPC3_HUMAN	transient receptor potential cation channel,	547	Extracellular (Potential).				axon guidance|phototransduction|platelet activation	integral to plasma membrane	protein binding|store-operated calcium channel activity			ovary(2)	2						GCTCTCATTTGCAGGGAGGAT	0.448		NaN											1	0	1.95512e-22	0.000147903	3.22332e-21	58	138									
SLC25A31	83447	broad.mit.edu	37	4	128685476	128685476	+	Missense_Mutation	SNP	G	G	C			TCGA-DK-A2I1-01A-11D-A17V-08	TCGA-DK-A2I1-10A-01D-A17V-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f350676a-e308-42fe-8297-9d18ba7027b1	bba7b385-f707-4654-ba9e-cd3bbebf4859	g.chr4:128685476G>C	uc003ifl.2	+	3	585	c.439G>C	c.(439-441)GAT>CAT	p.D147H		NM_031291	NP_112581	Q9H0C2	ADT4_HUMAN	solute carrier family 25 (mitochondrial carrier;	147	Solcar 2.				transmembrane transport	cilium|flagellum|integral to membrane|mitochondrial inner membrane	binding|transporter activity				0						ATATCCTCTAGATTTTGCCCG	0.378		NaN											0	0	0	9.7654e-05	0	17	56									
PRMT10	90826	broad.mit.edu	37	4	148575529	148575529	+	Missense_Mutation	SNP	G	G	C			TCGA-DK-A2I1-01A-11D-A17V-08	TCGA-DK-A2I1-10A-01D-A17V-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f350676a-e308-42fe-8297-9d18ba7027b1	bba7b385-f707-4654-ba9e-cd3bbebf4859	g.chr4:148575529G>C	uc003ilc.2	-	9	1661	c.1519C>G	c.(1519-1521)CAG>GAG	p.Q507E	PRMT10_uc003ilb.2_Missense_Mutation_p.Q151E|PRMT10_uc003ild.2_Missense_Mutation_p.Q394E	NM_138364	NP_612373	Q6P2P2	ANM10_HUMAN	protein arginine methyltransferase 10	507						cytoplasm	binding|protein methyltransferase activity			ovary(1)|central_nervous_system(1)	2						TTACTGGTCTGAAGGTTAGCG	0.383		NaN											0	0	0	0.000339439	0	30	82									
RAPGEF2	9693	broad.mit.edu	37	4	160264207	160264207	+	Nonsense_Mutation	SNP	C	C	T			TCGA-DK-A2I1-01A-11D-A17V-08	TCGA-DK-A2I1-10A-01D-A17V-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f350676a-e308-42fe-8297-9d18ba7027b1	bba7b385-f707-4654-ba9e-cd3bbebf4859	g.chr4:160264207C>T	uc003iqg.3	+	15	2822	c.2512C>T	c.(2512-2514)CAA>TAA	p.Q838*		NM_014247	NP_055062	Q9Y4G8	RPGF2_HUMAN	Rap guanine nucleotide exchange factor 2	838	Ras-GEF.				cAMP-mediated signaling|MAPKKK cascade|small GTPase mediated signal transduction	integral to plasma membrane|intracellular	calcium ion binding|diacylglycerol binding|Rap GTPase activator activity|Rap guanyl-nucleotide exchange factor activity|signal transducer activity			lung(2)|upper_aerodigestive_tract(1)|skin(1)	4	all_hematologic(180;0.24)			COAD - Colon adenocarcinoma(41;0.0817)		AAAACTATTTCAAGATCTCCA	0.423		NaN											0	0	0	0.000308642	0	15	33									
NAF1	92345	broad.mit.edu	37	4	164050300	164050300	+	Missense_Mutation	SNP	G	G	C			TCGA-DK-A2I1-01A-11D-A17V-08	TCGA-DK-A2I1-10A-01D-A17V-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f350676a-e308-42fe-8297-9d18ba7027b1	bba7b385-f707-4654-ba9e-cd3bbebf4859	g.chr4:164050300G>C	uc003iqj.2	-	8	1428	c.1234C>G	c.(1234-1236)CAG>GAG	p.Q412E	NAF1_uc010iqw.1_Intron	NM_138386	NP_612395	Q96HR8	NAF1_HUMAN	nuclear assembly factor 1 homolog isoform a	412					rRNA processing|snRNA pseudouridine synthesis	cytoplasm|nucleus|small nucleolar ribonucleoprotein complex	protein binding|snoRNA binding			ovary(2)	2	all_hematologic(180;0.166)	Prostate(90;0.109)				TTTTGTCTCTGAGAAGGAAAT	0.413		NaN											0	0	0	0.000442599	0	9	35									
DDX60	55601	broad.mit.edu	37	4	169197306	169197306	+	Missense_Mutation	SNP	C	C	T			TCGA-DK-A2I1-01A-11D-A17V-08	TCGA-DK-A2I1-10A-01D-A17V-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f350676a-e308-42fe-8297-9d18ba7027b1	bba7b385-f707-4654-ba9e-cd3bbebf4859	g.chr4:169197306C>T	uc003irp.2	-	15	2297	c.2005G>A	c.(2005-2007)GCT>ACT	p.A669T		NM_017631	NP_060101	Q8IY21	DDX60_HUMAN	DEAD (Asp-Glu-Ala-Asp) box polypeptide 60	669							ATP binding|ATP-dependent helicase activity|RNA binding			ovary(1)|central_nervous_system(1)|pancreas(1)	3		Prostate(90;0.00876)|Renal(120;0.0183)|all_neural(102;0.0837)|Melanoma(52;0.132)		GBM - Glioblastoma multiforme(119;0.0485)		ACCTGAACAGCTATACTTAAA	0.313		NaN											0	0	0	6.40141e-05	0	10	56									
CASP3	836	broad.mit.edu	37	4	185552257	185552257	+	Missense_Mutation	SNP	C	C	G			TCGA-DK-A2I1-01A-11D-A17V-08	TCGA-DK-A2I1-10A-01D-A17V-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f350676a-e308-42fe-8297-9d18ba7027b1	bba7b385-f707-4654-ba9e-cd3bbebf4859	g.chr4:185552257C>G	uc003iwh.2	-	7	801	c.538G>C	c.(538-540)GAT>CAT	p.D180H	CASP3_uc003iwg.2_Intron|CASP3_uc003iwi.2_Missense_Mutation_p.D180H	NM_004346	NP_004337	P42574	CASP3_HUMAN	caspase 3 preproprotein	180					activation of caspase activity by cytochrome c|DNA fragmentation involved in apoptotic nuclear change|negative regulation of apoptosis|nerve growth factor receptor signaling pathway|nuclear fragmentation involved in apoptotic nuclear change|proteolysis|response to tumor necrosis factor	cytosol|mitochondrion|nucleoplasm|plasma membrane	cysteine-type endopeptidase activity|protein binding			kidney(1)	1		all_lung(41;7.57e-14)|Lung NSC(41;1.81e-13)|Colorectal(36;0.00139)|Hepatocellular(41;0.00826)|Renal(120;0.00988)|Prostate(90;0.0235)|all_neural(102;0.057)|all_hematologic(60;0.0592)		all cancers(43;2.05e-27)|Epithelial(43;4.27e-24)|OV - Ovarian serous cystadenocarcinoma(60;3.04e-11)|Colorectal(24;2e-05)|STAD - Stomach adenocarcinoma(60;2.35e-05)|GBM - Glioblastoma multiforme(59;4.94e-05)|COAD - Colon adenocarcinoma(29;0.00017)|BRCA - Breast invasive adenocarcinoma(30;0.000218)|LUSC - Lung squamous cell carcinoma(40;0.00904)|READ - Rectum adenocarcinoma(43;0.161)	Melatonin(DB01065)|Minocycline(DB01017)|Simvastatin(DB00641)	GCCATGTCATCATCAACACCA	0.418		NaN											0	0	0	9.22233e-05	0	21	39									
ADAMTS16	170690	broad.mit.edu	37	5	5239847	5239847	+	Missense_Mutation	SNP	G	G	A			TCGA-DK-A2I1-01A-11D-A17V-08	TCGA-DK-A2I1-10A-01D-A17V-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f350676a-e308-42fe-8297-9d18ba7027b1	bba7b385-f707-4654-ba9e-cd3bbebf4859	g.chr5:5239847G>A	uc003jdl.2	+	16	2470	c.2332G>A	c.(2332-2334)GAA>AAA	p.E778K	ADAMTS16_uc003jdk.1_Missense_Mutation_p.E778K	NM_139056	NP_620687	Q8TE57	ATS16_HUMAN	ADAM metallopeptidase with thrombospondin type 1	778	Spacer.				proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			ovary(3)|lung(2)|large_intestine(1)|breast(1)|pancreas(1)	8						CCGCATCTATGAAATGAACGT	0.483		NaN											0	0	0	0.000147802	0	29	102									
DNAH5	1767	broad.mit.edu	37	5	13913930	13913930	+	Silent	SNP	G	G	A			TCGA-DK-A2I1-01A-11D-A17V-08	TCGA-DK-A2I1-10A-01D-A17V-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f350676a-e308-42fe-8297-9d18ba7027b1	bba7b385-f707-4654-ba9e-cd3bbebf4859	g.chr5:13913930G>A	uc003jfd.2	-	11	1500	c.1458C>T	c.(1456-1458)ATC>ATT	p.I486I	DNAH5_uc003jfe.1_RNA	NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	486	Stem (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					GGGTTGTAAAGATGTCTATTA	0.358		NaN							Kartagener_syndrome				0	0	0	0.000147903	0	71	77									
DNAH5	1767	broad.mit.edu	37	5	13923405	13923406	+	Missense_Mutation	DNP	GG	GG	TT			TCGA-DK-A2I1-01A-11D-A17V-08	TCGA-DK-A2I1-10A-01D-A17V-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f350676a-e308-42fe-8297-9d18ba7027b1	bba7b385-f707-4654-ba9e-cd3bbebf4859	g.chr5:13923405_13923406GG>TT	uc003jfd.2	-	4	463_464	c.421_422CC>AA	c.(421-423)CCT>AAT	p.P141N	DNAH5_uc003jfe.1_RNA	NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	141	Stem (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					GATGTTGTCAGGGGTGATGGCT	0.455		NaN							Kartagener_syndrome				0	0	0	6.4e-05	0	10	333									
RXFP3	51289	broad.mit.edu	37	5	33938041	33938041	+	Missense_Mutation	SNP	C	C	T			TCGA-DK-A2I1-01A-11D-A17V-08	TCGA-DK-A2I1-10A-01D-A17V-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f350676a-e308-42fe-8297-9d18ba7027b1	bba7b385-f707-4654-ba9e-cd3bbebf4859	g.chr5:33938041C>T	uc003jic.1	+	1	1553	c.1196C>T	c.(1195-1197)GCG>GTG	p.A399V		NM_016568	NP_057652	Q9NSD7	RL3R1_HUMAN	relaxin/insulin-like family peptide receptor 3	399	Cytoplasmic (Potential).					integral to plasma membrane	N-formyl peptide receptor activity			upper_aerodigestive_tract(1)	1						TTCCGCAAGGCGCTCAAGAGC	0.642		NaN											0	0	0	0.000586117	0	23	57									
GZMA	3001	broad.mit.edu	37	5	54398548	54398548	+	Missense_Mutation	SNP	C	C	T			TCGA-DK-A2I1-01A-11D-A17V-08	TCGA-DK-A2I1-10A-01D-A17V-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f350676a-e308-42fe-8297-9d18ba7027b1	bba7b385-f707-4654-ba9e-cd3bbebf4859	g.chr5:54398548C>T	uc003jpm.2	+	1	75	c.38C>T	c.(37-39)TCA>TTA	p.S13L		NM_006144	NP_006135	P12544	GRAA_HUMAN	granzyme A precursor	13					cleavage of lamin|cytolysis|immune response|negative regulation of DNA binding|negative regulation of endodeoxyribonuclease activity|negative regulation of oxidoreductase activity|positive regulation of apoptosis	extracellular region|immunological synapse|nucleus	protein homodimerization activity|serine-type endopeptidase activity			ovary(2)|pancreas(1)|skin(1)	4		Lung NSC(810;4.08e-05)|Breast(144;0.0433)|Prostate(74;0.183)				TCCTCTCTCTCAGTTGTCGTT	0.408		NaN											0	0	0	0.000125731	0	43	67									
DDX4	54514	broad.mit.edu	37	5	55094377	55094377	+	Silent	SNP	C	C	G			TCGA-DK-A2I1-01A-11D-A17V-08	TCGA-DK-A2I1-10A-01D-A17V-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f350676a-e308-42fe-8297-9d18ba7027b1	bba7b385-f707-4654-ba9e-cd3bbebf4859	g.chr5:55094377C>G	uc003jqg.3	+	18	1667	c.1593C>G	c.(1591-1593)CTC>CTG	p.L531L	DDX4_uc010ivz.2_Silent_p.L511L|DDX4_uc003jqh.3_Silent_p.L497L|DDX4_uc003jqj.2_Silent_p.L382L	NM_001136034	NP_001129506	Q9NQI0	DDX4_HUMAN	DEAD (Asp-Glu-Ala-Asp) box polypeptide 4 isoform	531	Helicase C-terminal.				multicellular organismal development|sperm motility	perinuclear region of cytoplasm|pi-body|piP-body	ATP binding|ATP-dependent helicase activity|nucleic acid binding			ovary(1)|skin(1)	2		Lung NSC(810;6.93e-05)|all_neural(839;0.00409)|Prostate(74;0.0107)|Breast(144;0.0544)|Ovarian(174;0.223)				GAGAAAAGCTCGTTGAAATTC	0.333		NaN											0	0	0	0.000491102	0	35	60									
AGGF1	55109	broad.mit.edu	37	5	76351402	76351402	+	Missense_Mutation	SNP	G	G	A			TCGA-DK-A2I1-01A-11D-A17V-08	TCGA-DK-A2I1-10A-01D-A17V-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f350676a-e308-42fe-8297-9d18ba7027b1	bba7b385-f707-4654-ba9e-cd3bbebf4859	g.chr5:76351402G>A	uc003ket.2	+	11	2057	c.1697G>A	c.(1696-1698)CGA>CAA	p.R566Q		NM_018046	NP_060516	Q8N302	AGGF1_HUMAN	angiogenic factor VG5Q	566					angiogenesis|cell adhesion|positive regulation of angiogenesis|positive regulation of endothelial cell proliferation|RNA processing|vasculogenesis	extracellular region|perinuclear region of cytoplasm	eukaryotic cell surface binding|nucleic acid binding|protein binding			ovary(1)|central_nervous_system(1)|skin(1)	3		all_lung(232;0.000414)|Lung NSC(167;0.0011)|Ovarian(174;0.0129)|Prostate(461;0.11)		OV - Ovarian serous cystadenocarcinoma(54;4.51e-51)|Epithelial(54;2.2e-45)|all cancers(79;6.68e-41)		AAGAAAATACGAGTAAAATAT	0.299		NaN											0	0	0	0.000151284	0	12	48									
MEF2C	4208	broad.mit.edu	37	5	88100568	88100568	+	Silent	SNP	C	C	T			TCGA-DK-A2I1-01A-11D-A17V-08	TCGA-DK-A2I1-10A-01D-A17V-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f350676a-e308-42fe-8297-9d18ba7027b1	bba7b385-f707-4654-ba9e-cd3bbebf4859	g.chr5:88100568C>T	uc003kjj.2	-	3	778	c.105G>A	c.(103-105)CTG>CTA	p.L35L	MEF2C_uc003kji.2_Silent_p.L35L|MEF2C_uc003kjk.2_Silent_p.L35L|MEF2C_uc003kjm.2_Silent_p.L35L|MEF2C_uc003kjl.2_Silent_p.L35L	NM_002397	NP_002388	Q06413	MEF2C_HUMAN	myocyte enhancer factor 2C isoform 1	35	MADS-box.				apoptosis|B cell proliferation|innate immune response|learning or memory|muscle cell differentiation|muscle organ development|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|negative regulation of transcription from RNA polymerase II promoter|nerve growth factor receptor signaling pathway|neuron development|positive regulation of muscle cell differentiation|positive regulation of survival gene product expression|positive regulation of transcription from RNA polymerase II promoter|regulation of germinal center formation|regulation of megakaryocyte differentiation|regulation of synaptic activity|stress-activated MAPK cascade|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	nuclear speck	activating transcription factor binding|protein heterodimerization activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding			lung(3)|breast(2)|ovary(1)|large_intestine(1)	7		all_cancers(142;6.67e-05)|all_epithelial(76;7.77e-07)|Lung NSC(167;0.00566)|all_lung(232;0.00732)|Colorectal(57;0.0959)|Ovarian(174;0.1)		OV - Ovarian serous cystadenocarcinoma(54;1.04e-33)|Epithelial(54;1.6e-28)|all cancers(79;2.9e-25)		ACAGCACGCTCAGCTCATAAG	0.418		NaN								HNSCC(66;0.2)			0	0	0	0.000442599	0	10	42									
TTC37	9652	broad.mit.edu	37	5	94876439	94876439	+	Silent	SNP	G	G	A			TCGA-DK-A2I1-01A-11D-A17V-08	TCGA-DK-A2I1-10A-01D-A17V-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f350676a-e308-42fe-8297-9d18ba7027b1	bba7b385-f707-4654-ba9e-cd3bbebf4859	g.chr5:94876439G>A	uc003klb.2	-	8	768	c.498C>T	c.(496-498)TTC>TTT	p.F166F	TTC37_uc010jbf.1_Silent_p.F118F	NM_014639	NP_055454	Q6PGP7	TTC37_HUMAN	tetratricopeptide repeat domain 37	166							binding			ovary(3)|pancreas(1)	4						TTTCAGCCAGGAACTGAGTCA	0.373		NaN											0	0	0	0.000147802	0	28	70									
RAD50	10111	broad.mit.edu	37	5	131927031	131927031	+	Missense_Mutation	SNP	A	A	G			TCGA-DK-A2I1-01A-11D-A17V-08	TCGA-DK-A2I1-10A-01D-A17V-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f350676a-e308-42fe-8297-9d18ba7027b1	bba7b385-f707-4654-ba9e-cd3bbebf4859	g.chr5:131927031A>G	uc003kxi.2	+	10	1955	c.1568A>G	c.(1567-1569)CAG>CGG	p.Q523R	RAD50_uc003kxh.2_Missense_Mutation_p.Q384R	NM_005732	NP_005723	Q92878	RAD50_HUMAN	RAD50 homolog isoform 1	523	Potential.				DNA duplex unwinding|double-strand break repair via homologous recombination|positive regulation of kinase activity|positive regulation of protein autophosphorylation|reciprocal meiotic recombination|regulation of mitotic recombination|telomere maintenance via telomerase	Mre11 complex|nuclear chromosome, telomeric region|nucleoplasm	ATP binding|DNA binding|nuclease activity|protein binding, bridging|zinc ion binding			lung(2)|ovary(1)|skin(1)	4		all_cancers(142;0.0368)|Breast(839;0.198)	KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)			AAACTTGACCAGGAGATGGAG	0.368		NaN						Homologous_recombination					0	0	0	6.4e-05	0	3	47									
ARHGAP26	23092	broad.mit.edu	37	5	142500655	142500655	+	Missense_Mutation	SNP	C	C	G			TCGA-DK-A2I1-01A-11D-A17V-08	TCGA-DK-A2I1-10A-01D-A17V-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f350676a-e308-42fe-8297-9d18ba7027b1	bba7b385-f707-4654-ba9e-cd3bbebf4859	g.chr5:142500655C>G	uc011dbj.1	+	18	1676	c.1641C>G	c.(1639-1641)ATC>ATG	p.I547M	ARHGAP26_uc003lmt.2_Missense_Mutation_p.I547M|ARHGAP26_uc003lmw.2_Missense_Mutation_p.I547M	NM_015071	NP_055886	Q9UNA1	RHG26_HUMAN	GTPase regulator associated with the focal	547	Rho-GAP.				actin cytoskeleton organization|filopodium assembly|nervous system development|small GTPase mediated signal transduction	cytoskeleton|cytosol|focal adhesion	cytoskeletal adaptor activity|Rho GTPase activator activity|SH3 domain binding			ovary(1)	1		all_hematologic(541;0.0416)	KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			TAGCAGCCATCATGGACATCA	0.433		NaN											0	0	0	0.000228196	0	40	71									
WDR46	9277	broad.mit.edu	37	6	33248750	33248750	+	Missense_Mutation	SNP	G	G	C			TCGA-DK-A2I1-01A-11D-A17V-08	TCGA-DK-A2I1-10A-01D-A17V-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f350676a-e308-42fe-8297-9d18ba7027b1	bba7b385-f707-4654-ba9e-cd3bbebf4859	g.chr6:33248750G>C	uc003ods.2	-	11	1174	c.1130C>G	c.(1129-1131)TCT>TGT	p.S377C	WDR46_uc011dra.1_Missense_Mutation_p.S323C	NM_005452	NP_005443	O15213	WDR46_HUMAN	WD repeat domain 46 isoform 1	377	WD 5.										0						GTCTAGGCCAGAGGTGGCCAT	0.552		NaN											0	0	0	6.40141e-05	0	11	34									
DNAH8	1769	broad.mit.edu	37	6	38810677	38810677	+	Missense_Mutation	SNP	G	G	C			TCGA-DK-A2I1-01A-11D-A17V-08	TCGA-DK-A2I1-10A-01D-A17V-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f350676a-e308-42fe-8297-9d18ba7027b1	bba7b385-f707-4654-ba9e-cd3bbebf4859	g.chr6:38810677G>C	uc003ooe.1	+	33	4792	c.4192G>C	c.(4192-4194)GAG>CAG	p.E1398Q		NM_001371	NP_001362			dynein, axonemal, heavy polypeptide 8											skin(8)|ovary(7)|lung(2)|large_intestine(1)|central_nervous_system(1)|kidney(1)|pancreas(1)	21						GGATGATATTGAGGTACATAA	0.274		NaN											0	0	0	0.000147903	0	105	33									
KIF6	221458	broad.mit.edu	37	6	39507812	39507813	+	Missense_Mutation	DNP	CC	CC	AA	rs142216439		TCGA-DK-A2I1-01A-11D-A17V-08	TCGA-DK-A2I1-10A-01D-A17V-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f350676a-e308-42fe-8297-9d18ba7027b1	bba7b385-f707-4654-ba9e-cd3bbebf4859	g.chr6:39507812_39507813CC>AA	uc003oot.2	-	13	1706_1707	c.1611_1612GG>TT	c.(1609-1614)TTGGGG>TTTTGG	p.537_538LG>FW	KIF6_uc010jwz.1_5'UTR|KIF6_uc010jxa.1_Missense_Mutation_p.328_329LG>FW|KIF6_uc011dua.1_Missense_Mutation_p.537_538LG>FW|KIF6_uc010jxb.1_Intron	NM_145027	NP_659464	Q6ZMV9	KIF6_HUMAN	kinesin family member 6	537_538					microtubule-based movement	cytoplasm|microtubule	ATP binding|microtubule motor activity|protein binding			breast(2)|central_nervous_system(1)	3						GATCTTTTCCCCAAAATGCTGA	0.465		NaN											0	0	0	6.4e-05	0	14	443									
TRERF1	55809	broad.mit.edu	37	6	42224512	42224512	+	Missense_Mutation	SNP	G	G	A			TCGA-DK-A2I1-01A-11D-A17V-08	TCGA-DK-A2I1-10A-01D-A17V-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f350676a-e308-42fe-8297-9d18ba7027b1	bba7b385-f707-4654-ba9e-cd3bbebf4859	g.chr6:42224512G>A	uc003osd.2	-	12	3097	c.2534C>T	c.(2533-2535)TCT>TTT	p.S845F	TRERF1_uc011duq.1_Missense_Mutation_p.S762F|TRERF1_uc003osb.2_Missense_Mutation_p.S601F|TRERF1_uc003osc.2_Missense_Mutation_p.S601F|TRERF1_uc003ose.2_Missense_Mutation_p.S865F	NM_033502	NP_277037	Q96PN7	TREF1_HUMAN	transcriptional regulating factor 1	845	ELM2.|Interacts with CREBBP.				cholesterol catabolic process|homeostatic process|multicellular organismal development|positive regulation of transcription, DNA-dependent|regulation of hormone biosynthetic process|steroid biosynthetic process	nucleus	DNA bending activity|ligand-dependent nuclear receptor transcription coactivator activity|RNA polymerase II transcription cofactor activity|sequence-specific DNA binding transcription factor activity|transcription factor binding|zinc ion binding			ovary(3)|pancreas(1)|skin(1)	5	Colorectal(47;0.196)		Colorectal(64;0.00062)|COAD - Colon adenocarcinoma(64;0.00152)			AGCAAATTCAGAATTGGTCCC	0.443		NaN											0	0	0	0.000147903	0	54	38									
TRERF1	55809	broad.mit.edu	37	6	42224558	42224558	+	Missense_Mutation	SNP	G	G	C			TCGA-DK-A2I1-01A-11D-A17V-08	TCGA-DK-A2I1-10A-01D-A17V-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f350676a-e308-42fe-8297-9d18ba7027b1	bba7b385-f707-4654-ba9e-cd3bbebf4859	g.chr6:42224558G>C	uc003osd.2	-	12	3051	c.2488C>G	c.(2488-2490)CTG>GTG	p.L830V	TRERF1_uc011duq.1_Missense_Mutation_p.L747V|TRERF1_uc003osb.2_Missense_Mutation_p.L586V|TRERF1_uc003osc.2_Missense_Mutation_p.L586V|TRERF1_uc003ose.2_Missense_Mutation_p.L850V	NM_033502	NP_277037	Q96PN7	TREF1_HUMAN	transcriptional regulating factor 1	830	ELM2.|Interacts with CREBBP.				cholesterol catabolic process|homeostatic process|multicellular organismal development|positive regulation of transcription, DNA-dependent|regulation of hormone biosynthetic process|steroid biosynthetic process	nucleus	DNA bending activity|ligand-dependent nuclear receptor transcription coactivator activity|RNA polymerase II transcription cofactor activity|sequence-specific DNA binding transcription factor activity|transcription factor binding|zinc ion binding			ovary(3)|pancreas(1)|skin(1)	5	Colorectal(47;0.196)		Colorectal(64;0.00062)|COAD - Colon adenocarcinoma(64;0.00152)			CACAAATTCAGAAGATTCTCC	0.463		NaN											0	0	0	0.000147903	0	55	28									
GTPBP2	54676	broad.mit.edu	37	6	43593155	43593155	+	Missense_Mutation	SNP	G	G	A			TCGA-DK-A2I1-01A-11D-A17V-08	TCGA-DK-A2I1-10A-01D-A17V-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f350676a-e308-42fe-8297-9d18ba7027b1	bba7b385-f707-4654-ba9e-cd3bbebf4859	g.chr6:43593155G>A	uc003ovs.2	-	5	687	c.650C>T	c.(649-651)TCT>TTT	p.S217F	GTPBP2_uc010jyv.2_Missense_Mutation_p.S129F|GTPBP2_uc003ovt.1_Missense_Mutation_p.S217F	NM_019096	NP_061969	Q9BX10	GTPB2_HUMAN	GTP binding protein 2	217							GTP binding|GTPase activity			liver(1)|skin(1)	2	all_cancers(18;9.36e-06)|Lung NSC(15;0.00161)|all_lung(25;0.004)		all cancers(41;0.000501)|Colorectal(64;0.00245)|COAD - Colon adenocarcinoma(64;0.00536)|STAD - Stomach adenocarcinoma(11;0.0826)|OV - Ovarian serous cystadenocarcinoma(102;0.167)			GGTTCGGCCAGACTGAATCTC	0.592		NaN											0	0	0	0.00058488	0	36	79									
GCLC	2729	broad.mit.edu	37	6	53370630	53370630	+	Missense_Mutation	SNP	C	C	G			TCGA-DK-A2I1-01A-11D-A17V-08	TCGA-DK-A2I1-10A-01D-A17V-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f350676a-e308-42fe-8297-9d18ba7027b1	bba7b385-f707-4654-ba9e-cd3bbebf4859	g.chr6:53370630C>G	uc003pbw.1	-	11	1649	c.1261G>C	c.(1261-1263)GGA>CGA	p.G421R	GCLC_uc003pbv.1_Missense_Mutation_p.G145R	NM_001498	NP_001489	P48506	GSH1_HUMAN	glutamate-cysteine ligase, catalytic subunit	421					anti-apoptosis|cell redox homeostasis|cysteine metabolic process|glutamate metabolic process|glutathione biosynthetic process|negative regulation of transcription, DNA-dependent|regulation of blood vessel size|response to heat|response to hormone stimulus|response to oxidative stress|xenobiotic metabolic process	cytosol	ADP binding|ATP binding|coenzyme binding|glutamate binding|glutamate-cysteine ligase activity|magnesium ion binding			ovary(1)|central_nervous_system(1)	2	Lung NSC(77;0.0137)				L-Cysteine(DB00151)|L-Glutamic Acid(DB00142)	ACTCTCCATCCAATGTCTGAG	0.428		NaN											0	0	0	0.000147802	0	24	55									
ZNF292	23036	broad.mit.edu	37	6	87970067	87970067	+	Silent	SNP	C	C	T			TCGA-DK-A2I1-01A-11D-A17V-08	TCGA-DK-A2I1-10A-01D-A17V-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f350676a-e308-42fe-8297-9d18ba7027b1	bba7b385-f707-4654-ba9e-cd3bbebf4859	g.chr6:87970067C>T	uc003plm.3	+	8	6761	c.6720C>T	c.(6718-6720)GAC>GAT	p.D2240D		NM_015021	NP_055836	O60281	ZN292_HUMAN	zinc finger protein 292	2240	C2H2-type 13.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(4)	4		all_cancers(76;3.82e-09)|Prostate(29;1.34e-10)|Acute lymphoblastic leukemia(125;2.17e-10)|all_hematologic(105;1.08e-06)|all_epithelial(107;5.31e-05)		BRCA - Breast invasive adenocarcinoma(108;0.0199)		TAGAGGCAGACCACGGGATTG	0.418		NaN											0	0	0	0.000184323	0	31	70									
ANKRD6	22881	broad.mit.edu	37	6	90340347	90340347	+	Missense_Mutation	SNP	C	C	T			TCGA-DK-A2I1-01A-11D-A17V-08	TCGA-DK-A2I1-10A-01D-A17V-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f350676a-e308-42fe-8297-9d18ba7027b1	bba7b385-f707-4654-ba9e-cd3bbebf4859	g.chr6:90340347C>T	uc003pni.3	+	16	2149	c.1808C>T	c.(1807-1809)GCA>GTA	p.A603V	ANKRD6_uc003pne.3_Missense_Mutation_p.A598V|ANKRD6_uc003pnf.3_Missense_Mutation_p.A568V|ANKRD6_uc011dzy.1_Missense_Mutation_p.A603V|ANKRD6_uc010kcd.2_Missense_Mutation_p.A539V|LYRM2_uc010kce.1_Intron|LYRM2_uc003png.2_Intron|ANKRD6_uc003pnh.3_Missense_Mutation_p.A199V|LYRM2_uc010kcf.1_Intron|ANKRD6_uc003pnj.3_Missense_Mutation_p.A199V	NM_014942	NP_055757	Q9Y2G4	ANKR6_HUMAN	ankyrin repeat domain 6	603							protein binding			ovary(2)|pancreas(1)	3		all_cancers(76;1.22e-09)|Prostate(29;1.16e-10)|Acute lymphoblastic leukemia(125;1.49e-10)|all_hematologic(105;7.79e-07)|all_epithelial(107;1.83e-05)|Lung NSC(302;0.239)		BRCA - Breast invasive adenocarcinoma(108;0.0209)		ATGAATGAGGCAGCCAGATCT	0.572		NaN											0	0	0	8.12818e-05	0	6	20									
VNN2	8875	broad.mit.edu	37	6	133072623	133072623	+	Silent	SNP	C	C	G			TCGA-DK-A2I1-01A-11D-A17V-08	TCGA-DK-A2I1-10A-01D-A17V-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f350676a-e308-42fe-8297-9d18ba7027b1	bba7b385-f707-4654-ba9e-cd3bbebf4859	g.chr6:133072623C>G	uc003qdt.2	-	5	872	c.861G>C	c.(859-861)GTG>GTC	p.V287V	VNN2_uc003qds.2_5'UTR|VNN2_uc010kgb.2_Intron|VNN2_uc003qdv.2_Silent_p.V234V	NM_004665	NP_004656	O95498	VNN2_HUMAN	vanin 2 isoform 1 precursor	287	CN hydrolase.				cellular component movement|pantothenate metabolic process	anchored to membrane|plasma membrane	pantetheine hydrolase activity				0				OV - Ovarian serous cystadenocarcinoma(155;0.00237)|GBM - Glioblastoma multiforme(226;0.0267)		CATAATGATACACTTTGGGAC	0.408		NaN											0	0	0	0.000151284	0	14	44									
LTV1	84946	broad.mit.edu	37	6	144179139	144179139	+	Missense_Mutation	SNP	G	G	C			TCGA-DK-A2I1-01A-11D-A17V-08	TCGA-DK-A2I1-10A-01D-A17V-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f350676a-e308-42fe-8297-9d18ba7027b1	bba7b385-f707-4654-ba9e-cd3bbebf4859	g.chr6:144179139G>C	uc003qjs.2	+	6	897	c.790G>C	c.(790-792)GAG>CAG	p.E264Q	LTV1_uc003qju.1_Missense_Mutation_p.E49Q|C6orf94_uc010khj.2_5'UTR	NM_032860	NP_116249	Q96GA3	LTV1_HUMAN	LTV1 homolog	264										ovary(1)	1				OV - Ovarian serous cystadenocarcinoma(155;2.72e-06)|GBM - Glioblastoma multiforme(68;0.0372)		TGAGAGGTTTGAGAAGGTAAG	0.423		NaN											0	0	0	0.000409698	0	28	15									
RBM16	22828	broad.mit.edu	37	6	155123181	155123181	+	Missense_Mutation	SNP	G	G	C			TCGA-DK-A2I1-01A-11D-A17V-08	TCGA-DK-A2I1-10A-01D-A17V-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f350676a-e308-42fe-8297-9d18ba7027b1	bba7b385-f707-4654-ba9e-cd3bbebf4859	g.chr6:155123181G>C	uc003qqa.2	+	8	915	c.683G>C	c.(682-684)GGT>GCT	p.G228A	RBM16_uc011efj.1_Missense_Mutation_p.G294A|RBM16_uc011efk.1_Missense_Mutation_p.G273A|RBM16_uc003qpz.2_Missense_Mutation_p.G228A|RBM16_uc010kji.2_Missense_Mutation_p.G249A	NM_014892	NP_055707	Q9UPN6	SCAF8_HUMAN	RNA-binding motif protein 16	228	Gln-rich.				mRNA processing|RNA splicing	nuclear matrix|spliceosomal complex	nucleotide binding|RNA binding|RNA polymerase core enzyme binding				0		Ovarian(120;0.196)		OV - Ovarian serous cystadenocarcinoma(155;2.33e-15)|BRCA - Breast invasive adenocarcinoma(81;0.00524)		CTAGATGCTGGTCTTGTTGTT	0.438		NaN											0	0	0	0.000602214	0	4	79									
C7orf28B	221960	broad.mit.edu	37	7	6865862	6865862	+	Splice_Site	SNP	G	G	C	rs141173433	by1000genomes	TCGA-DK-A2I1-01A-11D-A17V-08	TCGA-DK-A2I1-10A-01D-A17V-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f350676a-e308-42fe-8297-9d18ba7027b1	bba7b385-f707-4654-ba9e-cd3bbebf4859	g.chr7:6865862G>C	uc003sqx.1	-	1	1	c.-32_splice	c.e1-1		C7orf28B_uc011jxd.1_Splice_Site|C7orf28B_uc003sqy.1_Splice_Site	NM_198097	NP_932765	P86791	CCZ1_HUMAN	hypothetical protein LOC221960							lysosomal membrane					0		Ovarian(82;0.232)		UCEC - Uterine corpus endometrioid carcinoma (126;0.175)		AGCCTCCCACGGCCCGCCCAG	0.582		NaN											0	0	0	3.59834e-05	0	3	14									
ADCY1	107	broad.mit.edu	37	7	45650061	45650061	+	Missense_Mutation	SNP	C	C	G			TCGA-DK-A2I1-01A-11D-A17V-08	TCGA-DK-A2I1-10A-01D-A17V-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f350676a-e308-42fe-8297-9d18ba7027b1	bba7b385-f707-4654-ba9e-cd3bbebf4859	g.chr7:45650061C>G	uc003tne.3	+	3	891	c.873C>G	c.(871-873)TTC>TTG	p.F291L	ADCY1_uc003tnd.2_Missense_Mutation_p.F66L	NM_021116	NP_066939	Q08828	ADCY1_HUMAN	adenylate cyclase 1	291	Cytoplasmic (Potential).				activation of adenylate cyclase activity by G-protein signaling pathway|activation of phospholipase C activity|activation of protein kinase A activity|cellular response to glucagon stimulus|energy reserve metabolic process|inhibition of adenylate cyclase activity by G-protein signaling pathway|nerve growth factor receptor signaling pathway|synaptic transmission|transmembrane transport|water transport	integral to membrane|plasma membrane	ATP binding|calcium- and calmodulin-responsive adenylate cyclase activity|calmodulin binding|metal ion binding			ovary(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	6					Adenosine(DB00640)|Adenosine monophosphate(DB00131)|Adenosine triphosphate(DB00171)	AGAGGATTTTCCACAAGATTT	0.542		NaN											0	0	0	0.000374591	0	37	85									
RABGEF1	27342	broad.mit.edu	37	7	66270179	66270179	+	Silent	SNP	C	C	T			TCGA-DK-A2I1-01A-11D-A17V-08	TCGA-DK-A2I1-10A-01D-A17V-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f350676a-e308-42fe-8297-9d18ba7027b1	bba7b385-f707-4654-ba9e-cd3bbebf4859	g.chr7:66270179C>T	uc011kee.1	+	8	1079	c.915C>T	c.(913-915)ATC>ATT	p.I305I	RABGEF1_uc003tvf.2_Silent_p.I164I|RABGEF1_uc003tvg.2_Silent_p.I99I|RABGEF1_uc010lag.2_Silent_p.I291I|RABGEF1_uc003tvh.2_Silent_p.I291I|RABGEF1_uc003tvi.2_Silent_p.I125I	NM_014504	NP_055319	Q9UJ41	RABX5_HUMAN	RAB guanine nucleotide exchange factor (GEF) 1	508	VPS9.				endocytosis|protein transport	early endosome|recycling endosome	DNA binding|protein binding|zinc ion binding			ovary(1)	1						TGGCCTGCATCACCAAGTGCA	0.458		NaN											0	0	0	0.000219431	0	14	61									
PCLO	27445	broad.mit.edu	37	7	82580207	82580207	+	Missense_Mutation	SNP	C	C	T			TCGA-DK-A2I1-01A-11D-A17V-08	TCGA-DK-A2I1-10A-01D-A17V-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f350676a-e308-42fe-8297-9d18ba7027b1	bba7b385-f707-4654-ba9e-cd3bbebf4859	g.chr7:82580207C>T	uc003uhx.2	-	6	9986	c.9697G>A	c.(9697-9699)GAG>AAG	p.E3233K	PCLO_uc003uhv.2_Missense_Mutation_p.E3233K|PCLO_uc010lec.2_Missense_Mutation_p.E198K	NM_033026	NP_149015	Q9Y6V0	PCLO_HUMAN	piccolo isoform 1	3164	Gln-rich.				cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity			ovary(7)	7						TCCAATTCCTCAGCAAAGCGC	0.443		NaN											0	0	0	0.000228196	0	38	88									
CCDC132	55610	broad.mit.edu	37	7	92978099	92978099	+	Missense_Mutation	SNP	C	C	T			TCGA-DK-A2I1-01A-11D-A17V-08	TCGA-DK-A2I1-10A-01D-A17V-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f350676a-e308-42fe-8297-9d18ba7027b1	bba7b385-f707-4654-ba9e-cd3bbebf4859	g.chr7:92978099C>T	uc003umo.2	+	24	2412	c.2284C>T	c.(2284-2286)CTT>TTT	p.L762F	CCDC132_uc003umq.2_RNA|CCDC132_uc003ump.2_Missense_Mutation_p.L732F|CCDC132_uc003umr.2_RNA|CCDC132_uc011khz.1_Missense_Mutation_p.L482F	NM_017667	NP_060137	Q96JG6	CC132_HUMAN	coiled-coil domain containing 132 isoform a	762											0	all_cancers(62;2.64e-11)|all_epithelial(64;1.4e-10)|Breast(17;0.000675)|Lung NSC(181;0.0618)|all_lung(186;0.0837)		STAD - Stomach adenocarcinoma(171;0.000302)			AAAGCCCTTTCTTCAGCAGTT	0.403		NaN											0	0	0	0.000509022	0	42	88									
CYP3A7	1551	broad.mit.edu	37	7	99306789	99306789	+	Missense_Mutation	SNP	C	C	G			TCGA-DK-A2I1-01A-11D-A17V-08	TCGA-DK-A2I1-10A-01D-A17V-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f350676a-e308-42fe-8297-9d18ba7027b1	bba7b385-f707-4654-ba9e-cd3bbebf4859	g.chr7:99306789C>G	uc003uru.2	-	11	1227	c.1122G>C	c.(1120-1122)GAG>GAC	p.E374D	ZNF498_uc003urn.2_Intron|CYP3A5_uc003urs.2_Intron|CYP3A5_uc010lgg.2_Intron	NM_000765	NP_000756	P24462	CP3A7_HUMAN	cytochrome P450, family 3, subfamily A,	374					xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	aromatase activity|electron carrier activity|heme binding|oxygen binding			ovary(1)	1	Lung NSC(181;0.0144)|Esophageal squamous(72;0.0166)|all_lung(186;0.0228)					TGCAGACCCTCTCAAGTCTCA	0.428		NaN											0	0	0	9.7654e-05	0	19	106									
STAG3	10734	broad.mit.edu	37	7	99808634	99808634	+	Missense_Mutation	SNP	G	G	A			TCGA-DK-A2I1-01A-11D-A17V-08	TCGA-DK-A2I1-10A-01D-A17V-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f350676a-e308-42fe-8297-9d18ba7027b1	bba7b385-f707-4654-ba9e-cd3bbebf4859	g.chr7:99808634G>A	uc003utx.1	+	30	3394	c.3239G>A	c.(3238-3240)GGG>GAG	p.G1080E	STAG3_uc011kjk.1_Missense_Mutation_p.G1022E|GATS_uc003uty.3_Intron|GATS_uc003utz.3_Intron|GATS_uc003uua.3_Intron|GATS_uc010lgt.2_Intron|STAG3_uc003uub.1_Missense_Mutation_p.G304E	NM_012447	NP_036579	Q9UJ98	STAG3_HUMAN	stromal antigen 3	1080					chromosome segregation|synaptonemal complex assembly	chromosome, centromeric region|meiotic cohesin complex|synaptonemal complex	binding			ovary(4)|skin(2)|lung(1)|kidney(1)	8	Lung NSC(181;0.0181)|all_lung(186;0.0284)|Esophageal squamous(72;0.0439)					TGCTTGGCAGGGCCTGCCAAG	0.572		NaN											0	0	0	0.000117367	0	27	62									
MUC17	140453	broad.mit.edu	37	7	100677336	100677336	+	Missense_Mutation	SNP	C	C	A			TCGA-DK-A2I1-01A-11D-A17V-08	TCGA-DK-A2I1-10A-01D-A17V-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f350676a-e308-42fe-8297-9d18ba7027b1	bba7b385-f707-4654-ba9e-cd3bbebf4859	g.chr7:100677336C>A	uc003uxp.1	+	3	2692	c.2639C>A	c.(2638-2640)TCT>TAT	p.S880Y	MUC17_uc010lho.1_RNA	NM_001040105	NP_001035194	Q685J3	MUC17_HUMAN	mucin 17 precursor	880	Extracellular (Potential).|12.|59 X approximate tandem repeats.|Ser-rich.					extracellular region|integral to membrane|plasma membrane	extracellular matrix constituent, lubricant activity			ovary(14)|skin(8)|breast(3)|lung(2)	27	Lung NSC(181;0.136)|all_lung(186;0.182)					GTGGCCACTTCTGCAATCAGC	0.498		NaN											1	0	2.24612e-69	0.000147903	3.72532e-68	179	355									
FBXL13	222235	broad.mit.edu	37	7	102665560	102665560	+	Missense_Mutation	SNP	C	C	T			TCGA-DK-A2I1-01A-11D-A17V-08	TCGA-DK-A2I1-10A-01D-A17V-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f350676a-e308-42fe-8297-9d18ba7027b1	bba7b385-f707-4654-ba9e-cd3bbebf4859	g.chr7:102665560C>T	uc003vaq.2	-	6	872	c.445G>A	c.(445-447)GAG>AAG	p.E149K	FBXL13_uc010liq.1_5'UTR|FBXL13_uc010lir.1_Missense_Mutation_p.E149K|FBXL13_uc003var.2_RNA|FBXL13_uc003vas.2_Missense_Mutation_p.E149K|FBXL13_uc003vav.2_RNA	NM_145032	NP_659469	Q8NEE6	FXL13_HUMAN	F-box and leucine-rich repeat protein 13 isoform	149											0						TTTAGAGTCTCATCTACAAGA	0.294		NaN											0	0	0	0.000219431	0	14	42									
PSMC2	5701	broad.mit.edu	37	7	102988224	102988224	+	Silent	SNP	C	C	T			TCGA-DK-A2I1-01A-11D-A17V-08	TCGA-DK-A2I1-10A-01D-A17V-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f350676a-e308-42fe-8297-9d18ba7027b1	bba7b385-f707-4654-ba9e-cd3bbebf4859	g.chr7:102988224C>T	uc003vbs.2	+	1	136	c.66C>T	c.(64-66)ATC>ATT	p.I22I	DNAJC2_uc003vbo.2_5'Flank|DNAJC2_uc010lix.2_5'Flank|DNAJC2_uc003vbp.2_5'Flank|DNAJC2_uc003vbq.1_5'Flank|DNAJC2_uc003vbr.1_5'Flank|PSMC2_uc011kln.1_Silent_p.I22I|PSMC2_uc011klo.1_5'UTR	NM_002803	NP_002794	P35998	PRS7_HUMAN	proteasome 26S ATPase subunit 2	22					anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|G1/S transition of mitotic cell cycle|interspecies interaction between organisms|M/G1 transition of mitotic cell cycle|mRNA metabolic process|negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|regulation of apoptosis|regulation of cellular amino acid metabolic process|S phase of mitotic cell cycle|viral reproduction	mitochondrion|nucleus|proteasome complex	ATP binding|ATPase activity|protein binding				0						ACAAGCCCATCCGAGGTCAGT	0.597		NaN											0	0	0	9.7654e-05	0	16	64									
PUS7	54517	broad.mit.edu	37	7	105098242	105098242	+	Missense_Mutation	SNP	G	G	A			TCGA-DK-A2I1-01A-11D-A17V-08	TCGA-DK-A2I1-10A-01D-A17V-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f350676a-e308-42fe-8297-9d18ba7027b1	bba7b385-f707-4654-ba9e-cd3bbebf4859	g.chr7:105098242G>A	uc003vcx.2	-	16	2200	c.1981C>T	c.(1981-1983)CGC>TGC	p.R661C	PUS7_uc010lji.2_Missense_Mutation_p.R667C|PUS7_uc003vcy.2_Missense_Mutation_p.R661C|PUS7_uc003vcz.1_Missense_Mutation_p.R661C	NM_019042	NP_061915	Q96PZ0	PUS7_HUMAN	pseudouridylate synthase 7 homolog	661					pseudouridine synthesis|tRNA processing		pseudouridine synthase activity|RNA binding			breast(1)	1						ACTGCTCAGCGAAGCCAGGTT	0.448		NaN											0	0	0	0.000147903	0	67	323									
EXOC4	60412	broad.mit.edu	37	7	133502139	133502139	+	Missense_Mutation	SNP	G	G	C			TCGA-DK-A2I1-01A-11D-A17V-08	TCGA-DK-A2I1-10A-01D-A17V-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f350676a-e308-42fe-8297-9d18ba7027b1	bba7b385-f707-4654-ba9e-cd3bbebf4859	g.chr7:133502139G>C	uc003vrk.2	+	11	1611	c.1576G>C	c.(1576-1578)GAG>CAG	p.E526Q	EXOC4_uc011kpo.1_Missense_Mutation_p.E425Q|EXOC4_uc003vrl.2_Missense_Mutation_p.E136Q|EXOC4_uc011kpp.1_Missense_Mutation_p.E58Q	NM_021807	NP_068579	Q96A65	EXOC4_HUMAN	SEC8 protein isoform a	526					vesicle docking involved in exocytosis	exocyst	protein N-terminus binding			ovary(4)|large_intestine(3)|upper_aerodigestive_tract(1)|skin(1)	9		Esophageal squamous(399;0.129)				TCCTCTTCGAGAGTTTCTCAC	0.413		NaN											0	0	0	0.000109025	0	31	56									
ZNF777	27153	broad.mit.edu	37	7	149129613	149129613	+	Missense_Mutation	SNP	G	G	A			TCGA-DK-A2I1-01A-11D-A17V-08	TCGA-DK-A2I1-10A-01D-A17V-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f350676a-e308-42fe-8297-9d18ba7027b1	bba7b385-f707-4654-ba9e-cd3bbebf4859	g.chr7:149129613G>A	uc003wfv.2	-	6	1913	c.1750C>T	c.(1750-1752)CGG>TGG	p.R584W		NM_015694	NP_056509	Q9ULD5	ZN777_HUMAN	zinc finger protein 777	584	C2H2-type 2.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(1)	1	Melanoma(164;0.165)		OV - Ovarian serous cystadenocarcinoma(82;0.00358)			TGCTTGTGCCGGAAGCTGATC	0.642		NaN											0	0	0	0.000602214	0	4	40									
PPP3CC	5533	broad.mit.edu	37	8	22398214	22398214	+	Silent	SNP	C	C	A			TCGA-DK-A2I1-01A-11D-A17V-08	TCGA-DK-A2I1-10A-01D-A17V-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f350676a-e308-42fe-8297-9d18ba7027b1	bba7b385-f707-4654-ba9e-cd3bbebf4859	g.chr8:22398214C>A	uc003xbs.2	+	14	1765	c.1438C>A	c.(1438-1440)CGA>AGA	p.R480R	PPP3CC_uc011kzi.1_Silent_p.R489R|PPP3CC_uc003xbt.2_Silent_p.R470R|PPP3CC_uc011kzj.1_Silent_p.R195R	NM_005605	NP_005596	P48454	PP2BC_HUMAN	protein phosphatase 3, catalytic subunit, gamma	480					activation of pro-apoptotic gene products|induction of apoptosis by intracellular signals	cytosol	calmodulin binding|metal ion binding|phosphoprotein phosphatase activity			ovary(1)	1		Prostate(55;0.104)		BRCA - Breast invasive adenocarcinoma(99;0.00756)|Colorectal(74;0.0238)|COAD - Colon adenocarcinoma(73;0.0835)		AATGCCACCCCGAAAGGATAG	0.517		NaN											1	0	0.000602214	0.000602214	0.00908751	5	94									
NRG1	3084	broad.mit.edu	37	8	31498021	31498021	+	Missense_Mutation	SNP	G	G	A			TCGA-DK-A2I1-01A-11D-A17V-08	TCGA-DK-A2I1-10A-01D-A17V-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f350676a-e308-42fe-8297-9d18ba7027b1	bba7b385-f707-4654-ba9e-cd3bbebf4859	g.chr8:31498021G>A	uc003xip.2	+	1	754	c.521G>A	c.(520-522)GGC>GAC	p.G174D		NM_013962	NP_039256	Q02297	NRG1_HUMAN	neuregulin 1 isoform GGF2	Error:Variant_position_missing_in_Q02297_after_alignment					activation of transmembrane receptor protein tyrosine kinase activity|anti-apoptosis|cardiac muscle cell differentiation|cell communication|cell proliferation|cellular protein complex disassembly|embryo development|mammary gland development|negative regulation of cardiac muscle cell apoptosis|negative regulation of secretion|negative regulation of transcription, DNA-dependent|nervous system development|neural crest cell development|Notch signaling pathway|positive regulation of cardiac muscle cell proliferation|positive regulation of cell adhesion|positive regulation of cell growth|positive regulation of striated muscle cell differentiation|regulation of protein heterodimerization activity|regulation of protein homodimerization activity|transmembrane receptor protein tyrosine kinase signaling pathway|ventricular cardiac muscle cell differentiation|wound healing|wound healing	apical plasma membrane|extracellular region|extracellular space|integral to membrane|nucleus|plasma membrane	cytokine activity|ErbB-3 class receptor binding|growth factor activity|growth factor activity|protein binding|protein tyrosine kinase activator activity|receptor tyrosine kinase binding|transcription cofactor activity|transmembrane receptor protein tyrosine kinase activator activity				0		Breast(100;0.203)		KIRC - Kidney renal clear cell carcinoma(67;0.0768)|Kidney(114;0.0943)		AAAGCCGGGGGCTTGAAGAAG	0.706		NaN											0	0	0	0.000602214	0	4	16									
IDO2	169355	broad.mit.edu	37	8	39806766	39806766	+	Missense_Mutation	SNP	C	C	G			TCGA-DK-A2I1-01A-11D-A17V-08	TCGA-DK-A2I1-10A-01D-A17V-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f350676a-e308-42fe-8297-9d18ba7027b1	bba7b385-f707-4654-ba9e-cd3bbebf4859	g.chr8:39806766C>G	uc010lwy.1	+	2	363	c.121C>G	c.(121-123)CTT>GTT	p.L41V	IDO2_uc003xno.1_RNA	NM_194294	NP_919270	Q6ZQW0	I23O2_HUMAN	indoleamine-pyrrole 2,3 dioxygenase-like 1	28					tryptophan catabolic process to kynurenine	cytosol	heme binding|indoleamine 2,3-dioxygenase activity|tryptophan 2,3-dioxygenase activity			ovary(2)	2						GTATGGCTTTCTTCTTCCAGA	0.383		NaN											0	0	0	0.000442599	0	10	25									
ATP6V1H	51606	broad.mit.edu	37	8	54745646	54745647	+	Splice_Site	DNP	CC	CC	AA			TCGA-DK-A2I1-01A-11D-A17V-08	TCGA-DK-A2I1-10A-01D-A17V-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f350676a-e308-42fe-8297-9d18ba7027b1	bba7b385-f707-4654-ba9e-cd3bbebf4859	g.chr8:54745646_54745647CC>AA	uc003xrl.2	-	3	266	c.114_splice	c.e3-1	p.Q38_splice	ATP6V1H_uc003xrk.2_Splice_Site|ATP6V1H_uc003xrm.2_Splice_Site_p.Q38_splice|ATP6V1H_uc003xrn.2_Splice_Site_p.Q38_splice|ATP6V1H_uc011ldv.1_Splice_Site|ATP6V1H_uc010lyd.2_Intron|ATP6V1H_uc003xro.1_Splice_Site_p.Q35_splice	NM_213620	NP_998785	Q9UI12	VATH_HUMAN	ATPase, H+ transporting, lysosomal 50/57kDa, V1						ATP hydrolysis coupled proton transport|cellular iron ion homeostasis|endocytosis|insulin receptor signaling pathway|interspecies interaction between organisms|regulation of defense response to virus by virus|transferrin transport|vacuolar acidification|viral reproduction	cytosol|plasma membrane|vacuolar proton-transporting V-type ATPase, V1 domain	enzyme regulator activity|protein binding|proton-transporting ATPase activity, rotational mechanism				0		all_epithelial(80;0.0487)|Lung NSC(129;0.109)|all_lung(136;0.181)	OV - Ovarian serous cystadenocarcinoma(7;2.79e-06)|Epithelial(17;0.000629)|all cancers(17;0.00359)			TCATCTGTCCCCTAGAAAGTAA	0.406		NaN											0	0	0	6.4e-05	0	9	250									
IMPA1	3612	broad.mit.edu	37	8	82593018	82593018	+	Missense_Mutation	SNP	C	C	A			TCGA-DK-A2I1-01A-11D-A17V-08	TCGA-DK-A2I1-10A-01D-A17V-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f350676a-e308-42fe-8297-9d18ba7027b1	bba7b385-f707-4654-ba9e-cd3bbebf4859	g.chr8:82593018C>A	uc003ych.2	-	3	191	c.64G>T	c.(64-66)GTA>TTA	p.V22L	IMPA1_uc011lfq.1_Missense_Mutation_p.V81L|IMPA1_uc011lfr.1_Missense_Mutation_p.V22L	NM_005536	NP_005527	P29218	IMPA1_HUMAN	inositol(myo)-1(or 4)-monophosphatase 1 isoform	22					inositol phosphate dephosphorylation|phosphatidylinositol biosynthetic process|signal transduction	cytoplasm	inositol-1(or 4)-monophosphatase activity|metal ion binding|protein homodimerization activity			skin(1)	1					Lithium(DB01356)	TCACAAACTACCTAAAAAGAG	0.274		NaN											1	0	5.01169e-05	0.000566183	0.000771019	17	157									
TRPS1	7227	broad.mit.edu	37	8	116599486	116599487	+	Missense_Mutation	DNP	CC	CC	AA	rs146506752	by1000genomes	TCGA-DK-A2I1-01A-11D-A17V-08	TCGA-DK-A2I1-10A-01D-A17V-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f350676a-e308-42fe-8297-9d18ba7027b1	bba7b385-f707-4654-ba9e-cd3bbebf4859	g.chr8:116599486_116599487CC>AA	uc003ynz.2	-	4	2861_2862	c.2402_2403GG>TT	c.(2401-2403)CGG>CTT	p.R801L	TRPS1_uc011lhy.1_Missense_Mutation_p.R805L|TRPS1_uc003yny.2_Missense_Mutation_p.R814L|TRPS1_uc010mcy.2_Missense_Mutation_p.R801L	NM_014112	NP_054831	Q9UHF7	TRPS1_HUMAN	zinc finger transcription factor TRPS1	801	Mediates interaction with GLI3.				negative regulation of transcription from RNA polymerase II promoter|NLS-bearing substrate import into nucleus|regulation of chondrocyte differentiation|skeletal system development|transcription from RNA polymerase II promoter	nucleus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(2)|skin(2)|pancreas(1)|lung(1)|kidney(1)	7	all_cancers(13;5.44e-23)|all_epithelial(1;2.14e-27)|Lung NSC(37;2.55e-05)|Ovarian(258;0.0219)		Epithelial(1;9.78e-37)|all cancers(1;3.14e-31)|BRCA - Breast invasive adenocarcinoma(1;2.56e-12)			ACGGACTCCCCCGCAGGATGTC	0.559		NaN							Langer-Giedion_syndrome				0	0	0	6.4e-05	0	13	343									
COL14A1	7373	broad.mit.edu	37	8	121290778	121290778	+	Missense_Mutation	SNP	G	G	C			TCGA-DK-A2I1-01A-11D-A17V-08	TCGA-DK-A2I1-10A-01D-A17V-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f350676a-e308-42fe-8297-9d18ba7027b1	bba7b385-f707-4654-ba9e-cd3bbebf4859	g.chr8:121290778G>C	uc003yox.2	+	28	3707	c.3442G>C	c.(3442-3444)GAT>CAT	p.D1148H	COL14A1_uc003yoz.2_Missense_Mutation_p.D113H	NM_021110	NP_066933	Q05707	COEA1_HUMAN	collagen, type XIV, alpha 1 precursor	1148	VWFA 2.				cell-cell adhesion|collagen fibril organization	collagen type XIV|extracellular space	collagen binding|extracellular matrix structural constituent|protein binding, bridging			ovary(4)|kidney(4)|skin(2)|pancreas(1)|central_nervous_system(1)	12	Lung NSC(37;6.52e-07)|Ovarian(258;0.00769)|Hepatocellular(40;0.161)		OV - Ovarian serous cystadenocarcinoma(1;6.47e-38)|STAD - Stomach adenocarcinoma(47;0.00503)			AAGATCACAAGATGATGTGAA	0.358		NaN											0	0	0	0.000147903	0	45	40									
HAS2	3037	broad.mit.edu	37	8	122626946	122626946	+	Nonsense_Mutation	SNP	C	C	T			TCGA-DK-A2I1-01A-11D-A17V-08	TCGA-DK-A2I1-10A-01D-A17V-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f350676a-e308-42fe-8297-9d18ba7027b1	bba7b385-f707-4654-ba9e-cd3bbebf4859	g.chr8:122626946C>T	uc003yph.2	-	4	1600	c.1062G>A	c.(1060-1062)TGG>TGA	p.W354*		NM_005328	NP_005319	Q92819	HAS2_HUMAN	hyaluronan synthase 2	354	Cytoplasmic (Potential).					integral to plasma membrane	hyaluronan synthase activity		HAS2/PLAG1(10)	soft_tissue(10)|ovary(5)	15	Lung NSC(37;3.12e-08)|Ovarian(258;0.0254)|Hepatocellular(40;0.0997)|all_neural(195;0.142)		STAD - Stomach adenocarcinoma(47;0.00503)			AGGACTTGCTCCAACGGGTCT	0.448		NaN											0	0	0	0.000117367	0	28	118									
FER1L6	654463	broad.mit.edu	37	8	125058101	125058102	+	Missense_Mutation	DNP	CC	CC	AA			TCGA-DK-A2I1-01A-11D-A17V-08	TCGA-DK-A2I1-10A-01D-A17V-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f350676a-e308-42fe-8297-9d18ba7027b1	bba7b385-f707-4654-ba9e-cd3bbebf4859	g.chr8:125058101_125058102CC>AA	uc003yqw.2	+	21	2889_2890	c.2683_2684CC>AA	c.(2683-2685)CCG>AAG	p.P895K		NM_001039112	NP_001034201	Q2WGJ9	FR1L6_HUMAN	fer-1-like 6	895	Cytoplasmic (Potential).|C2 3.					integral to membrane				ovary(5)|skin(5)|central_nervous_system(1)	11	Lung NSC(37;4.1e-12)|Ovarian(258;0.00438)|all_neural(195;0.0741)		STAD - Stomach adenocarcinoma(47;0.00186)			GGCAGAGTCCCCGCCCTTAGTG	0.55		NaN											0	0	0	6.4e-05	0	11	342									
DENND3	22898	broad.mit.edu	37	8	142200469	142200469	+	Missense_Mutation	SNP	G	G	A			TCGA-DK-A2I1-01A-11D-A17V-08	TCGA-DK-A2I1-10A-01D-A17V-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f350676a-e308-42fe-8297-9d18ba7027b1	bba7b385-f707-4654-ba9e-cd3bbebf4859	g.chr8:142200469G>A	uc003yvy.2	+	20	3370	c.3092G>A	c.(3091-3093)CGA>CAA	p.R1031Q	DENND3_uc010mep.2_Missense_Mutation_p.R992Q|DENND3_uc003ywa.1_Missense_Mutation_p.R81Q|DENND3_uc003ywb.2_Missense_Mutation_p.R81Q	NM_014957	NP_055772	A2RUS2	DEND3_HUMAN	DENN/MADD domain containing 3	1031										ovary(1)	1	all_cancers(97;7.36e-15)|all_epithelial(106;2.33e-13)|Lung NSC(106;1.23e-05)|all_lung(105;1.75e-05)|Ovarian(258;0.01)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.105)			CAGCTGCCGCGAGGTGGCCTG	0.642		NaN											0	0	0	0.000308642	0	14	39									
ZNF623	9831	broad.mit.edu	37	8	144732979	144732979	+	Missense_Mutation	SNP	C	C	G			TCGA-DK-A2I1-01A-11D-A17V-08	TCGA-DK-A2I1-10A-01D-A17V-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f350676a-e308-42fe-8297-9d18ba7027b1	bba7b385-f707-4654-ba9e-cd3bbebf4859	g.chr8:144732979C>G	uc003yzd.2	+	1	1026	c.937C>G	c.(937-939)CAC>GAC	p.H313D	ZNF623_uc011lkp.1_Missense_Mutation_p.H273D|ZNF623_uc003yzc.2_Missense_Mutation_p.H273D	NM_014789	NP_055604	O75123	ZN623_HUMAN	zinc finger protein 623 isoform 1	313	C2H2-type 7.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0	all_cancers(97;3.74e-11)|all_epithelial(106;2.62e-09)|Lung NSC(106;0.00013)|all_lung(105;0.000374)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;2.46e-41)|Epithelial(56;5.28e-40)|all cancers(56;5.23e-35)|Colorectal(110;0.055)|BRCA - Breast invasive adenocarcinoma(115;0.146)			CCAGAGAATTCACACCGGAGA	0.468		NaN											0	0	0	0.000147903	0	58	72									
PLEC	5339	broad.mit.edu	37	8	144993101	144993101	+	Missense_Mutation	SNP	C	C	G			TCGA-DK-A2I1-01A-11D-A17V-08	TCGA-DK-A2I1-10A-01D-A17V-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f350676a-e308-42fe-8297-9d18ba7027b1	bba7b385-f707-4654-ba9e-cd3bbebf4859	g.chr8:144993101C>G	uc003zaf.1	-	32	11469	c.11299G>C	c.(11299-11301)GAG>CAG	p.E3767Q	PLEC_uc003zab.1_Missense_Mutation_p.E3630Q|PLEC_uc003zac.1_Missense_Mutation_p.E3634Q|PLEC_uc003zad.2_Missense_Mutation_p.E3630Q|PLEC_uc003zae.1_Missense_Mutation_p.E3598Q|PLEC_uc003zag.1_Missense_Mutation_p.E3608Q|PLEC_uc003zah.2_Missense_Mutation_p.E3616Q|PLEC_uc003zaj.2_Missense_Mutation_p.E3657Q	NM_201380	NP_958782	Q15149	PLEC_HUMAN	plectin isoform 1	3767	Globular 2.				cellular component disassembly involved in apoptosis|hemidesmosome assembly	cytosol|focal adhesion|hemidesmosome|intermediate filament cytoskeleton|sarcolemma	actin binding|structural constituent of muscle|structural constituent of muscle			large_intestine(2)|ovary(2)|pancreas(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	9						CGGATGATCTCTGTCTTCTCA	0.612		NaN											0	0	0	0.000586117	0	21	115									
PLEC	5339	broad.mit.edu	37	8	144994322	144994322	+	Nonsense_Mutation	SNP	C	C	A			TCGA-DK-A2I1-01A-11D-A17V-08	TCGA-DK-A2I1-10A-01D-A17V-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f350676a-e308-42fe-8297-9d18ba7027b1	bba7b385-f707-4654-ba9e-cd3bbebf4859	g.chr8:144994322C>A	uc003zaf.1	-	32	10248	c.10078G>T	c.(10078-10080)GAG>TAG	p.E3360*	PLEC_uc003zab.1_Nonsense_Mutation_p.E3223*|PLEC_uc003zac.1_Nonsense_Mutation_p.E3227*|PLEC_uc003zad.2_Nonsense_Mutation_p.E3223*|PLEC_uc003zae.1_Nonsense_Mutation_p.E3191*|PLEC_uc003zag.1_Nonsense_Mutation_p.E3201*|PLEC_uc003zah.2_Nonsense_Mutation_p.E3209*|PLEC_uc003zaj.2_Nonsense_Mutation_p.E3250*	NM_201380	NP_958782	Q15149	PLEC_HUMAN	plectin isoform 1	3360	Globular 2.				cellular component disassembly involved in apoptosis|hemidesmosome assembly	cytosol|focal adhesion|hemidesmosome|intermediate filament cytoskeleton|sarcolemma	actin binding|structural constituent of muscle|structural constituent of muscle			large_intestine(2)|ovary(2)|pancreas(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	9						GAGTAGAGCTCCTCCTGCCGG	0.677		NaN											1	0	3.86212e-05	3.86212e-05	0.000597493	10	56									
PTPRD	5789	broad.mit.edu	37	9	8500790	8500790	+	Missense_Mutation	SNP	C	C	T			TCGA-DK-A2I1-01A-11D-A17V-08	TCGA-DK-A2I1-10A-01D-A17V-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f350676a-e308-42fe-8297-9d18ba7027b1	bba7b385-f707-4654-ba9e-cd3bbebf4859	g.chr9:8500790C>T	uc003zkk.2	-	23	2803	c.2092G>A	c.(2092-2094)GAG>AAG	p.E698K	PTPRD_uc003zkp.2_Intron|PTPRD_uc003zkq.2_Intron|PTPRD_uc003zkr.2_Intron|PTPRD_uc003zks.2_Intron|PTPRD_uc003zkl.2_Missense_Mutation_p.E698K|PTPRD_uc003zkm.2_Missense_Mutation_p.E685K|PTPRD_uc003zkn.2_Intron|PTPRD_uc003zko.2_Intron	NM_002839	NP_002830	P23468	PTPRD_HUMAN	protein tyrosine phosphatase, receptor type, D	698	Fibronectin type-III 4.|Extracellular (Potential).				transmembrane receptor protein tyrosine phosphatase signaling pathway	integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			lung(14)|large_intestine(3)|ovary(2)|breast(2)|urinary_tract(1)	22		all_cancers(3;3.38e-95)|all_epithelial(3;2.84e-91)|all_lung(3;7.3e-56)|Lung NSC(3;1.82e-52)|Renal(3;3.42e-19)|all_hematologic(3;0.000134)|all_neural(3;0.00409)|Acute lymphoblastic leukemia(23;0.0069)|Melanoma(3;0.0121)|Myeloproliferative disorder(4;0.0122)|Medulloblastoma(3;0.0144)|Lung SC(3;0.0301)|Ovarian(56;0.0694)|Hepatocellular(3;0.0824)		all cancers(1;3.38e-12)|Epithelial(1;2.12e-09)|STAD - Stomach adenocarcinoma(1;1.29e-07)|KIRC - Kidney renal clear cell carcinoma(3;5.49e-07)|Kidney(3;6.36e-07)|GBM - Glioblastoma multiforme(50;9.05e-05)|Lung(1;0.000189)|BRCA - Breast invasive adenocarcinoma(1;0.00178)|LUSC - Lung squamous cell carcinoma(1;0.0115)|LUAD - Lung adenocarcinoma(58;0.119)		GACAAGCTCTCAGGGCCAGGG	0.483		NaN								TSP Lung(15;0.13)			0	0	0	0.000437636	0	40	43									
MLLT3	4300	broad.mit.edu	37	9	20414343	20414343	+	Silent	SNP	A	A	G			TCGA-DK-A2I1-01A-11D-A17V-08	TCGA-DK-A2I1-10A-01D-A17V-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f350676a-e308-42fe-8297-9d18ba7027b1	bba7b385-f707-4654-ba9e-cd3bbebf4859	g.chr9:20414343A>G	uc003zoe.2	-	5	760	c.501T>C	c.(499-501)AGT>AGC	p.S167S	MLLT3_uc011lne.1_Silent_p.S135S|MLLT3_uc011lnf.1_Silent_p.S164S|MLLT3_uc003zof.2_5'UTR|MLLT3_uc011lng.1_Missense_Mutation_p.V129A	NM_004529	NP_004520	P42568	AF9_HUMAN	myeloid/lymphoid or mixed-lineage leukemia	167	Poly-Ser.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	protein binding			lung(2)|ovary(1)	3				GBM - Glioblastoma multiforme(3;4.35e-105)|Lung(42;3.48e-06)|LUSC - Lung squamous cell carcinoma(42;7.92e-05)		tgctgctgctactgctgctgc	0.139		NaN	T	MLL	ALL								0	0	0	0.00024832	0	4	40									
AQP7	364	broad.mit.edu	37	9	33386406	33386406	+	Missense_Mutation	SNP	G	G	C			TCGA-DK-A2I1-01A-11D-A17V-08	TCGA-DK-A2I1-10A-01D-A17V-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f350676a-e308-42fe-8297-9d18ba7027b1	bba7b385-f707-4654-ba9e-cd3bbebf4859	g.chr9:33386406G>C	uc003zst.2	-	5	574	c.402C>G	c.(400-402)TTC>TTG	p.F134L	SUGT1P1_uc010mjq.1_Intron|AQP7_uc003zsu.1_Missense_Mutation_p.F77L|AQP7_uc010mjs.2_Missense_Mutation_p.F42L|AQP7_uc010mjt.2_Missense_Mutation_p.F42L|AQP7_uc011lnx.1_Missense_Mutation_p.F134L|AQP7_uc011lny.1_Missense_Mutation_p.F133L|AQP7_uc003zss.3_Missense_Mutation_p.F42L|AQP7_uc011lnz.1_Missense_Mutation_p.F42L|AQP7_uc011loa.1_Missense_Mutation_p.F42L	NM_001170	NP_001161	O14520	AQP7_HUMAN	aquaporin 7	134	Helical; (Potential).				excretion|generation of precursor metabolites and energy	cell-cell junction|cytoplasm|integral to plasma membrane	glycerol channel activity|water channel activity				0			LUSC - Lung squamous cell carcinoma(29;0.00788)	GBM - Glioblastoma multiforme(74;0.191)		ACTCACTGTAGAAGAGACTGT	0.577		NaN											0	0	0	0.00024832	0	4	23									
AQP7	364	broad.mit.edu	37	9	33387057	33387057	+	Missense_Mutation	SNP	G	G	C			TCGA-DK-A2I1-01A-11D-A17V-08	TCGA-DK-A2I1-10A-01D-A17V-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f350676a-e308-42fe-8297-9d18ba7027b1	bba7b385-f707-4654-ba9e-cd3bbebf4859	g.chr9:33387057G>C	uc003zst.2	-	4	350	c.178C>G	c.(178-180)CTA>GTA	p.L60V	SUGT1P1_uc010mjq.1_Intron|AQP7_uc003zsu.1_Missense_Mutation_p.L3V|AQP7_uc010mjs.2_Intron|AQP7_uc010mjt.2_Intron|AQP7_uc011lnx.1_Missense_Mutation_p.L60V|AQP7_uc011lny.1_Missense_Mutation_p.L59V|AQP7_uc003zss.3_Intron|AQP7_uc011lnz.1_Intron|AQP7_uc011loa.1_Intron	NM_001170	NP_001161	O14520	AQP7_HUMAN	aquaporin 7	60	Extracellular (Potential).				excretion|generation of precursor metabolites and energy	cell-cell junction|cytoplasm|integral to plasma membrane	glycerol channel activity|water channel activity				0			LUSC - Lung squamous cell carcinoma(29;0.00788)	GBM - Glioblastoma multiforme(74;0.191)		TTTTTATTTAGAACCATATGG	0.567		NaN											0	0	0	3.59834e-05	0	5	50									
ANKRD20A4	728747	broad.mit.edu	37	9	69420374	69420375	+	Missense_Mutation	DNP	GG	GG	TT			TCGA-DK-A2I1-01A-11D-A17V-08	TCGA-DK-A2I1-10A-01D-A17V-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f350676a-e308-42fe-8297-9d18ba7027b1	bba7b385-f707-4654-ba9e-cd3bbebf4859	g.chr9:69420374_69420375GG>TT	uc004afn.2	+	13	1376_1377	c.1264_1265GG>TT	c.(1264-1266)GGG>TTG	p.G422L		NM_001098805	NP_001092275	Q4UJ75	A20A4_HUMAN	ankyrin repeat domain 20 family, member A4	422											0						AAGAAAGATTGGGAAAACGTAT	0.342		NaN											0	0	0	6.4e-05	0	9	354									
APBA1	320	broad.mit.edu	37	9	72047530	72047530	+	Silent	SNP	G	G	A			TCGA-DK-A2I1-01A-11D-A17V-08	TCGA-DK-A2I1-10A-01D-A17V-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f350676a-e308-42fe-8297-9d18ba7027b1	bba7b385-f707-4654-ba9e-cd3bbebf4859	g.chr9:72047530G>A	uc004ahh.2	-	12	2640	c.2364C>T	c.(2362-2364)ATC>ATT	p.I788I		NM_001163	NP_001154	Q02410	APBA1_HUMAN	amyloid beta A4 precursor protein-binding,	788	PDZ 2.				axon cargo transport|cell adhesion|intracellular protein transport|nervous system development|protein complex assembly|synaptic transmission	synaptic vesicle				lung(1)	1						TGATTTCAATGATCCGGTGCC	0.582		NaN											0	0	0	0.000147903	0	51	6									
RASEF	158158	broad.mit.edu	37	9	85677430	85677430	+	Nonsense_Mutation	SNP	G	G	T			TCGA-DK-A2I1-01A-11D-A17V-08	TCGA-DK-A2I1-10A-01D-A17V-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f350676a-e308-42fe-8297-9d18ba7027b1	bba7b385-f707-4654-ba9e-cd3bbebf4859	g.chr9:85677430G>T	uc004amo.1	-	1	614	c.353C>A	c.(352-354)TCG>TAG	p.S118*	RASEF_uc004amp.1_Nonsense_Mutation_p.S118*	NM_152573	NP_689786	Q8IZ41	RASEF_HUMAN	RAS and EF-hand domain containing	118					protein transport|small GTPase mediated signal transduction	perinuclear region of cytoplasm	calcium ion binding|GTP binding	p.S118L(1)		upper_aerodigestive_tract(1)|lung(1)|breast(1)	3						CGGGCCGCACGAGGTGGCCAG	0.721		NaN											1	0	2.23348e-06	0.000422831	3.49449e-05	13	19									
COL15A1	1306	broad.mit.edu	37	9	101800955	101800955	+	Missense_Mutation	SNP	G	G	C	rs139652646	byFrequency	TCGA-DK-A2I1-01A-11D-A17V-08	TCGA-DK-A2I1-10A-01D-A17V-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f350676a-e308-42fe-8297-9d18ba7027b1	bba7b385-f707-4654-ba9e-cd3bbebf4859	g.chr9:101800955G>C	uc004azb.1	+	22	2621	c.2415G>C	c.(2413-2415)TTG>TTC	p.L805F		NM_001855	NP_001846	P39059	COFA1_HUMAN	alpha 1 type XV collagen precursor	805	Nonhelical region 4 (NC4).				angiogenesis|cell differentiation|signal transduction	collagen type XV|extracellular space|integral to membrane	binding			ovary(6)	6		Acute lymphoblastic leukemia(62;0.0562)				TTCAGTCCTTGATCAATATCA	0.463		NaN											0	0	0	0.000437636	0	37	228									
ERP44	23071	broad.mit.edu	37	9	102861077	102861077	+	Missense_Mutation	SNP	G	G	A	rs140289515		TCGA-DK-A2I1-01A-11D-A17V-08	TCGA-DK-A2I1-10A-01D-A17V-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f350676a-e308-42fe-8297-9d18ba7027b1	bba7b385-f707-4654-ba9e-cd3bbebf4859	g.chr9:102861077G>A	uc004bam.2	-	1	254	c.46C>T	c.(46-48)CTT>TTT	p.L16F	ERP44_uc010msy.2_RNA|ERP44_uc010msz.2_Missense_Mutation_p.L16F|INVS_uc010mta.1_5'Flank|INVS_uc011lve.1_5'Flank|INVS_uc004bao.1_5'Flank|INVS_uc004bap.1_5'Flank|INVS_uc004baq.1_5'Flank|INVS_uc004bar.1_5'Flank|INVS_uc010mtb.1_5'Flank	NM_015051	NP_055866	Q9BS26	ERP44_HUMAN	thioredoxin domain containing 4 (endoplasmic	16					cell redox homeostasis|glycoprotein metabolic process|protein folding|response to unfolded protein	endoplasmic reticulum lumen|endoplasmic reticulum membrane|ER-Golgi intermediate compartment	protein binding|protein disulfide isomerase activity				0						AGGAGCAGAAGGGAGCATCTG	0.572		NaN											0	0	0	3.59834e-05	0	6	36									
LAMC3	10319	broad.mit.edu	37	9	133945103	133945103	+	Missense_Mutation	SNP	G	G	A			TCGA-DK-A2I1-01A-11D-A17V-08	TCGA-DK-A2I1-10A-01D-A17V-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f350676a-e308-42fe-8297-9d18ba7027b1	bba7b385-f707-4654-ba9e-cd3bbebf4859	g.chr9:133945103G>A	uc004caa.1	+	17	3033	c.2935G>A	c.(2935-2937)GAG>AAG	p.E979K		NM_006059	NP_006050	Q9Y6N6	LAMC3_HUMAN	laminin, gamma 3 precursor	979	Laminin EGF-like 11.			E -> Y (in Ref. 1; AAD36991).	cell adhesion	basement membrane|membrane	structural molecule activity			ovary(2)|pancreas(1)	3	all_hematologic(7;0.0028)	Myeloproliferative disorder(178;0.204)		OV - Ovarian serous cystadenocarcinoma(145;5.06e-05)|Epithelial(140;0.000551)		CCAGTGCCACGAGAACGGCAC	0.662		NaN											0	0	0	0.000151284	0	14	13									
COL5A1	1289	broad.mit.edu	37	9	137591828	137591828	+	Silent	SNP	C	C	T			TCGA-DK-A2I1-01A-11D-A17V-08	TCGA-DK-A2I1-10A-01D-A17V-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f350676a-e308-42fe-8297-9d18ba7027b1	bba7b385-f707-4654-ba9e-cd3bbebf4859	g.chr9:137591828C>T	uc004cfe.2	+	3	733	c.351C>T	c.(349-351)GTC>GTT	p.V117V		NM_000093	NP_000084	P20908	CO5A1_HUMAN	alpha 1 type V collagen preproprotein	117	TSP N-terminal.|Laminin G-like.				axon guidance|cell adhesion|collagen biosynthetic process|collagen fibril organization|eye morphogenesis|fibril organization|integrin biosynthetic process|skin development|wound healing, spreading of epidermal cells	collagen type V	heparin binding|integrin binding|platelet-derived growth factor binding|proteoglycan binding			skin(4)|ovary(3)|pancreas(2)|central_nervous_system(1)|kidney(1)	11		Myeloproliferative disorder(178;0.0341)		all cancers(34;2.28e-08)|OV - Ovarian serous cystadenocarcinoma(145;6.03e-08)|Epithelial(140;6.4e-08)|GBM - Glioblastoma multiforme(294;0.131)		CCTTCCTGGTCTCCATCTACA	0.587		NaN											0	0	0	0.000151284	0	13	83									
ASMTL	8623	broad.mit.edu	37	X	1540663	1540663	+	Missense_Mutation	SNP	A	A	G			TCGA-DK-A2I1-01A-11D-A17V-08	TCGA-DK-A2I1-10A-01D-A17V-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f350676a-e308-42fe-8297-9d18ba7027b1	bba7b385-f707-4654-ba9e-cd3bbebf4859	g.chrX:1540663A>G	uc004cpx.1	-	9	1244	c.1133T>C	c.(1132-1134)ATG>ACG	p.M378T	ASMTL_uc011mhe.1_Missense_Mutation_p.M302T|ASMTL_uc004cpy.1_Missense_Mutation_p.M362T|ASMTL_uc011mhf.1_Missense_Mutation_p.M320T	NM_004192	NP_004183	O95671	ASML_HUMAN	acetylserotonin O-methyltransferase-like	378	ASMT-like.				melatonin biosynthetic process	cytoplasm	acetylserotonin O-methyltransferase activity				0		all_cancers(21;4.28e-07)|all_epithelial(21;2.07e-08)|all_lung(23;2.81e-05)|Lung NSC(23;0.000693)|Lung SC(21;0.122)				ATTATTGTGCATGATGAAGCC	0.522		NaN											0	0	0	3.86212e-05	0	11	522									
TLR8	51311	broad.mit.edu	37	X	12937404	12937404	+	Nonsense_Mutation	SNP	C	C	G			TCGA-DK-A2I1-01A-11D-A17V-08	TCGA-DK-A2I1-10A-01D-A17V-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f350676a-e308-42fe-8297-9d18ba7027b1	bba7b385-f707-4654-ba9e-cd3bbebf4859	g.chrX:12937404C>G	uc004cve.2	+	2	313	c.245C>G	c.(244-246)TCA>TGA	p.S82*	TLR8_uc004cvd.2_Nonsense_Mutation_p.S100*	NM_138636	NP_619542	Q9NR97	TLR8_HUMAN	toll-like receptor 8 precursor	82	Extracellular (Potential).				cellular response to mechanical stimulus|defense response to virus|I-kappaB kinase/NF-kappaB cascade|immunoglobulin mediated immune response|inflammatory response|innate immune response|positive regulation of innate immune response|positive regulation of interferon-alpha biosynthetic process|positive regulation of interferon-beta biosynthetic process|positive regulation of interferon-gamma biosynthetic process|positive regulation of interleukin-8 biosynthetic process	endosome membrane	DNA binding|double-stranded RNA binding|single-stranded RNA binding|transmembrane receptor activity			ovary(4)|lung(2)|large_intestine(1)	7						ACGAATGAATCATTTCAAGGG	0.413		NaN											0	0	0	0.000602214	0	5	187									
ZRSR2	8233	broad.mit.edu	37	X	15838418	15838419	+	Missense_Mutation	DNP	CG	CG	AT			TCGA-DK-A2I1-01A-11D-A17V-08	TCGA-DK-A2I1-10A-01D-A17V-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f350676a-e308-42fe-8297-9d18ba7027b1	bba7b385-f707-4654-ba9e-cd3bbebf4859	g.chrX:15838418_15838419CG>AT	uc004cxg.3	+	10	961_962	c.916_917CG>AT	c.(916-918)CGG>ATG	p.R306M		NM_005089	NP_005080	Q15696	U2AFM_HUMAN	U2 small nuclear RNA auxiliary factor 1-like 2	306	C3H1-type 2.				spliceosome assembly	U12-type spliceosomal complex	nucleotide binding|pre-mRNA 3'-splice site binding|protein binding|zinc ion binding			breast(3)	3	Hepatocellular(33;0.183)					CCCCGTGACCCGGTGGAAAATG	0.441		NaN											0	0	0	6.4e-05	0	7	213									
NUDT10	170685	broad.mit.edu	37	X	51075911	51075911	+	Missense_Mutation	SNP	G	G	A			TCGA-DK-A2I1-01A-11D-A17V-08	TCGA-DK-A2I1-10A-01D-A17V-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f350676a-e308-42fe-8297-9d18ba7027b1	bba7b385-f707-4654-ba9e-cd3bbebf4859	g.chrX:51075911G>A	uc004dph.2	+	2	314	c.94G>A	c.(94-96)GAG>AAG	p.E32K	NUDT10_uc004dpi.3_Missense_Mutation_p.E32K	NM_153183	NP_694853	Q8NFP7	NUD10_HUMAN	nudix-type motif 10	32	Nudix hydrolase.					cytoplasm	diphosphoinositol-polyphosphate diphosphatase activity|metal ion binding				0	Ovarian(276;0.236)					GCGCGAGGACGAGGTCCTGTT	0.687		NaN											0	0	0	0.000157383	0	7	25									
SLC7A3	84889	broad.mit.edu	37	X	70148785	70148785	+	Silent	SNP	C	C	T			TCGA-DK-A2I1-01A-11D-A17V-08	TCGA-DK-A2I1-10A-01D-A17V-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f350676a-e308-42fe-8297-9d18ba7027b1	bba7b385-f707-4654-ba9e-cd3bbebf4859	g.chrX:70148785C>T	uc004dyn.2	-	3	596	c.438G>A	c.(436-438)AAG>AAA	p.K146K	SLC7A3_uc004dyo.2_Silent_p.K146K	NM_032803	NP_116192	Q8WY07	CTR3_HUMAN	solute carrier family 7 (cationic amino acid	146	Extracellular (Potential).				cellular nitrogen compound metabolic process	integral to membrane|plasma membrane				ovary(1)|kidney(1)	2	Renal(35;0.156)				L-Arginine(DB00125)|L-Lysine(DB00123)|L-Ornithine(DB00129)	CCTGCAGAGTCTTAGAGATGT	0.542		NaN											0	0	0	0.00010058	0	12	61									
AGTR2	186	broad.mit.edu	37	X	115304028	115304029	+	Missense_Mutation	DNP	CC	CC	AA			TCGA-DK-A2I1-01A-11D-A17V-08	TCGA-DK-A2I1-10A-01D-A17V-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f350676a-e308-42fe-8297-9d18ba7027b1	bba7b385-f707-4654-ba9e-cd3bbebf4859	g.chrX:115304028_115304029CC>AA	uc004eqh.3	+	3	702_703	c.495_496CC>AA	c.(493-498)CCCCTT>CCAATT	p.L166I		NM_000686	NP_000677	P50052	AGTR2_HUMAN	angiotensin II receptor, type 2	166	Helical; Name=4; (Potential).				behavior|blood vessel remodeling|brain development|G-protein signaling, coupled to cGMP nucleotide second messenger|intracellular protein kinase cascade|negative regulation of blood vessel endothelial cell migration|negative regulation of cell growth|negative regulation of heart rate|negative regulation of nerve growth factor receptor signaling pathway|nitric oxide mediated signal transduction|positive regulation of apoptosis|positive regulation of nitric-oxide synthase activity|positive regulation of phosphoprotein phosphatase activity|positive regulation of vasodilation|regulation of systemic arterial blood pressure by circulatory renin-angiotensin		angiotensin type II receptor activity|receptor antagonist activity			ovary(2)|lung(1)	3						ATATAGTTCCCCTTGTTTGGTG	0.396		NaN											0	0	0	6.4e-05	0	14	397									
THOC2	57187	broad.mit.edu	37	X	122756965	122756965	+	Missense_Mutation	SNP	C	C	T			TCGA-DK-A2I1-01A-11D-A17V-08	TCGA-DK-A2I1-10A-01D-A17V-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f350676a-e308-42fe-8297-9d18ba7027b1	bba7b385-f707-4654-ba9e-cd3bbebf4859	g.chrX:122756965C>T	uc004etu.2	-	29	3705	c.3673G>A	c.(3673-3675)GAG>AAG	p.E1225K	THOC2_uc010nqt.1_5'Flank|THOC2_uc004etw.1_Missense_Mutation_p.E46K	NM_001081550	NP_001075019	Q8NI27	THOC2_HUMAN	THO complex 2	1225					intronless viral mRNA export from host nucleus|mRNA processing|RNA splicing	THO complex part of transcription export complex	protein binding|RNA binding			ovary(3)	3						CCAGTCTCCTCAGTACTGCTT	0.403		NaN											0	0	0	0.000375601	0	24	93									
ELF4	2000	broad.mit.edu	37	X	129208117	129208117	+	Splice_Site	SNP	C	C	G			TCGA-DK-A2I1-01A-11D-A17V-08	TCGA-DK-A2I1-10A-01D-A17V-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f350676a-e308-42fe-8297-9d18ba7027b1	bba7b385-f707-4654-ba9e-cd3bbebf4859	g.chrX:129208117C>G	uc004evd.3	-	4	633	c.248_splice	c.e4-1	p.D83_splice	ELF4_uc004eve.3_Splice_Site_p.D83_splice	NM_001421	NP_001412	Q99607	ELF4_HUMAN	E74-like factor 4						natural killer cell proliferation|NK T cell proliferation|positive regulation of transcription from RNA polymerase II promoter	PML body	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)	1						TCATTGTCATCTGGTCCGGGT	0.532		NaN	T	ERG	AML								0	0	0	0.000147903	0	53	165									
PHF6	84295	broad.mit.edu	37	X	133549106	133549106	+	Missense_Mutation	SNP	G	G	C			TCGA-DK-A2I1-01A-11D-A17V-08	TCGA-DK-A2I1-10A-01D-A17V-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f350676a-e308-42fe-8297-9d18ba7027b1	bba7b385-f707-4654-ba9e-cd3bbebf4859	g.chrX:133549106G>C	uc004exj.2	+	8	992	c.790G>C	c.(790-792)GAT>CAT	p.D264H	PHF6_uc004exk.2_Missense_Mutation_p.D264H|PHF6_uc011mvk.1_Missense_Mutation_p.D230H|PHF6_uc004exh.2_Missense_Mutation_p.D265H|PHF6_uc010nrr.2_Missense_Mutation_p.D264H|PHF6_uc004exi.2_Missense_Mutation_p.D265H	NM_001015877	NP_001015877	Q8IWS0	PHF6_HUMAN	PHD finger protein 6 isoform 1	264					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleolus	zinc ion binding			ovary(1)	1	Acute lymphoblastic leukemia(192;0.000127)					TGGAGACTTTGATATTAAAAC	0.333		NaN											0	0	0	0.000147903	0	53	80									
FGF13	2258	broad.mit.edu	37	X	137939732	137939732	+	Silent	SNP	G	G	A			TCGA-DK-A2I1-01A-11D-A17V-08	TCGA-DK-A2I1-10A-01D-A17V-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f350676a-e308-42fe-8297-9d18ba7027b1	bba7b385-f707-4654-ba9e-cd3bbebf4859	g.chrX:137939732G>A	uc004faq.2	-	2	335	c.159C>T	c.(157-159)CAC>CAT	p.H53H	FGF13_uc011mwi.1_Silent_p.H24H|FGF13_uc004far.2_Silent_p.H24H|FGF13_uc011mwj.1_Silent_p.H53H|FGF13_uc011mwk.1_Intron	NM_001139502	NP_001132974	Q92913	FGF13_HUMAN	fibroblast growth factor 13 isoform 3	Error:Variant_position_missing_in_Q92913_after_alignment					cell-cell signaling|MAPKKK cascade|nervous system development	cytoplasm|nucleus	growth factor activity|protein kinase activator activity			ovary(1)|large_intestine(1)|breast(1)	3	Acute lymphoblastic leukemia(192;0.000127)					AGAAGATTTCGTGACACTTAG	0.478		NaN											0	0	0	0.000147903	0	65	149									
PRRG3	79057	broad.mit.edu	37	X	150869180	150869180	+	Missense_Mutation	SNP	G	G	A			TCGA-DK-A2I1-01A-11D-A17V-08	TCGA-DK-A2I1-10A-01D-A17V-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f350676a-e308-42fe-8297-9d18ba7027b1	bba7b385-f707-4654-ba9e-cd3bbebf4859	g.chrX:150869180G>A	uc004few.1	+	4	761	c.371G>A	c.(370-372)CGC>CAC	p.R124H		NM_024082	NP_076987	Q9BZD7	TMG3_HUMAN	proline rich Gla (G-carboxyglutamic acid) 3	124	Cytoplasmic (Potential).					extracellular region|integral to membrane	calcium ion binding			ovary(3)|skin(1)	4	Acute lymphoblastic leukemia(192;6.56e-05)					CTAGCCAGTCGCGCCGGGCAC	0.632		NaN											0	0	0	0.000566183	0	18	81									
RENBP	5973	broad.mit.edu	37	X	153206997	153206997	+	Silent	SNP	G	G	A			TCGA-DK-A2I1-01A-11D-A17V-08	TCGA-DK-A2I1-10A-01D-A17V-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f350676a-e308-42fe-8297-9d18ba7027b1	bba7b385-f707-4654-ba9e-cd3bbebf4859	g.chrX:153206997G>A	uc004fjo.1	-	8	1049	c.879C>T	c.(877-879)TCC>TCT	p.S293S	RENBP_uc011mzh.1_3'UTR	NM_002910	NP_002901	P51606	RENBP_HUMAN	renin binding protein	293					mannose metabolic process|regulation of blood pressure		endopeptidase inhibitor activity|mannose-6-phosphate isomerase activity|N-acylglucosamine 2-epimerase activity			ovary(1)|pancreas(1)	2	all_cancers(53;6.72e-15)|all_epithelial(53;3.19e-09)|all_lung(58;3.39e-06)|all_hematologic(71;4.25e-06)|Lung NSC(58;4.7e-06)|Acute lymphoblastic leukemia(192;6.56e-05)				N-Acetyl-D-glucosamine(DB00141)	GGTCCCATCCGGAGTGGAAGG	0.587		NaN											0	0	0	0.000184323	0	29	107									
ZBTB40	9923	broad.mit.edu	37	1	22838561	22838563	+	In_Frame_Del	DEL	AAG	AAG	-			TCGA-DK-A2I1-01A-11D-A17V-08	TCGA-DK-A2I1-10A-01D-A17V-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f350676a-e308-42fe-8297-9d18ba7027b1	bba7b385-f707-4654-ba9e-cd3bbebf4859	g.chr1:22838561_22838563delAAG	uc001bft.2	+	12	2906_2908	c.2395_2397delAAG	c.(2395-2397)AAGdel	p.K803del	ZBTB40_uc001bfu.2_In_Frame_Del_p.K803del|ZBTB40_uc009vqi.1_In_Frame_Del_p.K691del|ZBTB40_uc001bfv.1_In_Frame_Del_p.K432del	NM_001083621	NP_001077090	Q9NUA8	ZBT40_HUMAN	zinc finger and BTB domain containing 40	803					bone mineralization|regulation of transcription, DNA-dependent|response to DNA damage stimulus|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1		Colorectal(325;3.46e-05)|Lung NSC(340;6.55e-05)|all_lung(284;9.87e-05)|Renal(390;0.000219)|Breast(348;0.00222)|Ovarian(437;0.00308)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|OV - Ovarian serous cystadenocarcinoma(117;2.86e-26)|Colorectal(126;8.55e-08)|COAD - Colon adenocarcinoma(152;4.1e-06)|GBM - Glioblastoma multiforme(114;1.39e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000712)|KIRC - Kidney renal clear cell carcinoma(1967;0.00374)|STAD - Stomach adenocarcinoma(196;0.00645)|READ - Rectum adenocarcinoma(331;0.0693)|Lung(427;0.216)		CGATGCCCCCAAGAAGAAGAAGA	0.517		NaN											NaN	NaN	NaN	NaN	NaN	7	115	---	---							
CACNA1E	777	broad.mit.edu	37	1	181680102	181680103	+	Frame_Shift_Del	DEL	AG	AG	-			TCGA-DK-A2I1-01A-11D-A17V-08	TCGA-DK-A2I1-10A-01D-A17V-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f350676a-e308-42fe-8297-9d18ba7027b1	bba7b385-f707-4654-ba9e-cd3bbebf4859	g.chr1:181680102_181680103delAG	uc001gow.2	+	8	1233_1234	c.1068_1069delAG	c.(1066-1071)AAAGAGfs	p.K356fs	CACNA1E_uc009wxs.2_Frame_Shift_Del_p.K263fs	NM_000721	NP_000712	Q15878	CAC1E_HUMAN	calcium channel, voltage-dependent, R type,	356_357	Cytoplasmic (Potential).				energy reserve metabolic process|membrane depolarization|synaptic transmission	voltage-gated calcium channel complex	voltage-gated calcium channel activity			ovary(3)|central_nervous_system(2)|pancreas(1)	6						AATTTGCCAAAGAGAGAGAGAG	0.51		NaN											NaN	NaN	NaN	NaN	NaN	9	85	---	---							
PIK3C2B	5287	broad.mit.edu	37	1	204400888	204400889	+	Frame_Shift_Ins	INS	-	-	A			TCGA-DK-A2I1-01A-11D-A17V-08	TCGA-DK-A2I1-10A-01D-A17V-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f350676a-e308-42fe-8297-9d18ba7027b1	bba7b385-f707-4654-ba9e-cd3bbebf4859	g.chr1:204400888_204400889insA	uc001haw.2	-	29	4667_4668	c.4188_4189insT	c.(4186-4191)ACTCACfs	p.T1396fs	PIK3C2B_uc010pqv.1_Frame_Shift_Ins_p.T1368fs	NM_002646	NP_002637	O00750	P3C2B_HUMAN	phosphoinositide-3-kinase, class 2 beta	1396_1397	PX.				cell communication|phosphatidylinositol-mediated signaling	endoplasmic reticulum|microsome|nucleus|phosphatidylinositol 3-kinase complex|plasma membrane	1-phosphatidylinositol-3-kinase activity|ATP binding|phosphatidylinositol binding|phosphatidylinositol-4-phosphate 3-kinase activity|protein binding			lung(2)|breast(2)|stomach(1)|prostate(1)|central_nervous_system(1)	7	all_cancers(21;0.00347)|all_neural(3;0.0218)|Glioma(3;0.0382)|all_epithelial(62;0.171)|Breast(84;0.179)|Prostate(682;0.227)		GBM - Glioblastoma multiforme(2;2.69e-45)|all cancers(3;1.66e-30)|KIRC - Kidney renal clear cell carcinoma(13;0.0584)|Kidney(21;0.0934)|BRCA - Breast invasive adenocarcinoma(75;0.143)|Epithelial(59;0.193)			GTGGCCTCGTGAGTGTTCTCTC	0.535		NaN									OREG0014134	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	NaN	NaN	NaN	NaN	NaN	43	171	---	---							
FAM171A1	221061	broad.mit.edu	37	10	15254987	15254989	+	In_Frame_Del	DEL	TCA	TCA	-			TCGA-DK-A2I1-01A-11D-A17V-08	TCGA-DK-A2I1-10A-01D-A17V-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f350676a-e308-42fe-8297-9d18ba7027b1	bba7b385-f707-4654-ba9e-cd3bbebf4859	g.chr10:15254987_15254989delTCA	uc001iob.2	-	8	2605_2607	c.2598_2600delTGA	c.(2596-2601)GATGAC>GAC	p.866_867DD>D		NM_001010924	NP_001010924	Q5VUB5	F1711_HUMAN	hypothetical protein LOC221061 precursor	866_867	Cytoplasmic (Potential).					integral to membrane				ovary(2)|breast(1)|skin(1)	4						TTCTCCTTGGTCATCATCATCAT	0.571		NaN											NaN	NaN	NaN	NaN	NaN	7	292	---	---							
LRP1	4035	broad.mit.edu	37	12	57606238	57606239	+	Frame_Shift_Ins	INS	-	-	G			TCGA-DK-A2I1-01A-11D-A17V-08	TCGA-DK-A2I1-10A-01D-A17V-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f350676a-e308-42fe-8297-9d18ba7027b1	bba7b385-f707-4654-ba9e-cd3bbebf4859	g.chr12:57606238_57606239insG	uc001snd.2	+	89	14001_14002	c.13535_13536insG	c.(13534-13536)ATGfs	p.M4512fs		NM_002332	NP_002323	Q07954	LRP1_HUMAN	low density lipoprotein-related protein 1	4512	Cytoplasmic (Potential).|Interaction with MAFB (By similarity).				aorta morphogenesis|apoptotic cell clearance|negative regulation of platelet-derived growth factor receptor-beta signaling pathway|negative regulation of smooth muscle cell migration|negative regulation of Wnt receptor signaling pathway|positive regulation of cholesterol efflux|regulation of actin cytoskeleton organization|regulation of phospholipase A2 activity	coated pit|integral to plasma membrane|nucleus	apolipoprotein E binding|calcium ion binding|lipoprotein transporter activity|protein complex binding|receptor activity			ovary(8)|lung(3)|breast(3)|large_intestine(2)|central_nervous_system(2)|skin(2)|pancreas(2)	22				BRCA - Breast invasive adenocarcinoma(357;0.0103)	Alteplase(DB00009)|Anistreplase(DB00029)|Antihemophilic Factor(DB00025)|Becaplermin(DB00102)|Coagulation Factor IX(DB00100)|Tenecteplase(DB00031)	ACACTCTACATGGGGGGCCATG	0.644		NaN											NaN	NaN	NaN	NaN	NaN	19	1896	---	---							
SLC25A30	253512	broad.mit.edu	37	13	45971416	45971417	+	In_Frame_Ins	INS	-	-	TAA			TCGA-DK-A2I1-01A-11D-A17V-08	TCGA-DK-A2I1-10A-01D-A17V-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f350676a-e308-42fe-8297-9d18ba7027b1	bba7b385-f707-4654-ba9e-cd3bbebf4859	g.chr13:45971416_45971417insTAA	uc001vag.2	-	9	947_948	c.810_811insTTA	c.(808-813)insTTA	p.270_271insL	SLC25A30_uc010tfs.1_In_Frame_Ins_p.195_196insL|SLC25A30_uc001vah.2_In_Frame_Ins_p.195_196insL|SLC25A30_uc010tft.1_In_Frame_Ins_p.219_220insL|SLC25A30_uc001vaf.2_3'UTR	NM_001010875	NP_001010875	Q5SVS4	KMCP1_HUMAN	solute carrier family 25, member 30	270_271	Solcar 3.|Helical; Name=6; (Potential).				mitochondrial transport	integral to membrane|mitochondrial inner membrane	binding			breast(1)	1		Lung NSC(96;0.00227)|Prostate(109;0.00578)|Breast(56;0.0192)|Lung SC(185;0.0367)|Hepatocellular(98;0.0556)	KIRC - Kidney renal clear cell carcinoma(16;0.234)	GBM - Glioblastoma multiforme(144;7.95e-05)		GGACCAAGTCTCAACCAATTTG	0.307		NaN											NaN	NaN	NaN	NaN	NaN	40	78	---	---							
KCTD19	146212	broad.mit.edu	37	16	67325657	67325658	+	Frame_Shift_Ins	INS	-	-	G			TCGA-DK-A2I1-01A-11D-A17V-08	TCGA-DK-A2I1-10A-01D-A17V-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f350676a-e308-42fe-8297-9d18ba7027b1	bba7b385-f707-4654-ba9e-cd3bbebf4859	g.chr16:67325657_67325658insG	uc002esu.2	-	13	2352_2353	c.2301_2302insC	c.(2299-2304)CCCGTGfs	p.P767fs	KCTD19_uc002est.2_Frame_Shift_Ins_p.P539fs|KCTD19_uc010vjj.1_Frame_Shift_Ins_p.P510fs	NM_001100915	NP_001094385	Q17RG1	KCD19_HUMAN	potassium channel tetramerisation domain	767_768						voltage-gated potassium channel complex	voltage-gated potassium channel activity			skin(1)	1		Ovarian(137;0.192)		OV - Ovarian serous cystadenocarcinoma(108;0.0311)|Epithelial(162;0.0906)		CTGCCCACCACGGGGGGGTGAG	0.574		NaN											NaN	NaN	NaN	NaN	NaN	9	105	---	---							
C6	729	broad.mit.edu	37	5	41181559	41181560	+	Frame_Shift_Ins	INS	-	-	C			TCGA-DK-A2I1-01A-11D-A17V-08	TCGA-DK-A2I1-10A-01D-A17V-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f350676a-e308-42fe-8297-9d18ba7027b1	bba7b385-f707-4654-ba9e-cd3bbebf4859	g.chr5:41181559_41181560insC	uc003jmk.2	-	7	1038_1039	c.828_829insG	c.(826-831)GGGAGCfs	p.G276fs	C6_uc003jml.1_Frame_Shift_Ins_p.G276fs	NM_000065	NP_000056	P13671	CO6_HUMAN	complement component 6 precursor	276_277	MACPF.				complement activation, classical pathway|cytolysis|innate immune response	membrane attack complex	protein binding			ovary(3)|central_nervous_system(2)|skin(2)	7		Breast(839;1.07e-05)|Ovarian(839;0.0228)|Lung SC(612;0.0548)|Lung NSC(810;0.128)|all_neural(839;0.157)				CTGAAAGAGCTCCCCCCCTGAC	0.376		NaN											NaN	NaN	NaN	NaN	NaN	30	62	---	---							
