Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	TranscriptID	Exon	ChromChange	AAChange	COSMIC_Codon	COSMIC_Gene	Drug_Target
ERLIN1	10613	broad.mit.edu	36	10	101905896	101905896	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-A03F-01A-11W-A096-10	TCGA-AA-A03F-11A-12W-A096-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001100626	exon10	c.C741A	p.I247I	.	.	.
C10orf47	254427	broad.mit.edu	36	10	11934200	11934200	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A03F-01A-11W-A096-10	TCGA-AA-A03F-11A-12W-A096-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_153256	exon2	c.C118T	p.R40C	.	.	.
CXCL12	6387	broad.mit.edu	36	10	44194135	44194135	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A03F-01A-11W-A096-10	TCGA-AA-A03F-11A-12W-A096-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001178134	exon3	c.G222A	p.P74P	.	.	.
DKK1	22943	broad.mit.edu	36	10	53746193	53746193	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A03F-01A-11W-A096-10	TCGA-AA-A03F-11A-12W-A096-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_012242	exon3	c.A539C	p.H180P	.	.	.
ITIH2	3698	broad.mit.edu	36	10	7831169	7831169	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A03F-01A-11W-A096-10	TCGA-AA-A03F-11A-12W-A096-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_002216	exon21	c.G2707T	p.D903Y	.	.	.
SLIT1	6585	broad.mit.edu	36	10	98792710	98792710	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A03F-01A-11W-A096-10	TCGA-AA-A03F-11A-12W-A096-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_003061	exon20	c.C2102A	p.P701H	.	.	.
FXYD6	53826	broad.mit.edu	36	11	117217747	117217747	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A03F-01A-11W-A096-10	TCGA-AA-A03F-11A-12W-A096-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001164837	exon5	c.C141T	p.V47V	.	.	.
HYOU1	10525	broad.mit.edu	36	11	118428577	118428577	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A03F-01A-11W-A096-10	TCGA-AA-A03F-11A-12W-A096-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_006389	exon9	c.C969T	p.N323N	.	.	.
OR10G9	219870	broad.mit.edu	36	11	123399605	123399605	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A03F-01A-11W-A096-10	TCGA-AA-A03F-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001001953	exon1	c.C676T	p.R226W	.	.	.
OR10G8	219869	broad.mit.edu	36	11	123406463	123406463	+	Silent	SNP	T	G	G	novel	unknown	TCGA-AA-A03F-01A-11W-A096-10	TCGA-AA-A03F-11A-12W-A096-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001004464	exon1	c.T924G	p.S308S	.	.	.
UBQLN3	50613	broad.mit.edu	36	11	5485401	5485401	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A03F-01A-11W-A096-10	TCGA-AA-A03F-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_017481	exon2	c.C1964T	p.S655L	.	.	.
CDHR5	53841	broad.mit.edu	36	11	611883	611883	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A03F-01A-11W-A096-10	TCGA-AA-A03F-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_031264	exon4	c.G334A	p.V112M	.	.	.
OR10A4	283297	broad.mit.edu	36	11	6855142	6855142	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A03F-01A-11W-A096-10	TCGA-AA-A03F-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_207186	exon1	c.C688T	p.P230S	.	.	.
GRM5	2915	broad.mit.edu	36	11	87881684	87881684	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A03F-01A-11W-A096-10	TCGA-AA-A03F-11A-12W-A096-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_000842	exon9	c.C3267T	p.I1089I	.	.	.
NOS1	4842	broad.mit.edu	36	12	116194699	116194699	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A03F-01A-11W-A096-10	TCGA-AA-A03F-11A-12W-A096-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_000620	exon10	c.C1713T	p.A571A	.	.	.
KRAS	3845	broad.mit.edu	36	12	25289551	25289551	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A03F-01A-11W-A096-10	TCGA-AA-A03F-11A-12W-A096-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_004985	exon2	c.G35A	p.G12D	 KRAS,haematopoietic_and_lymphoid_tissue,NS,Substitution - Missense,0 	.	.
FGFR1OP2	26127	broad.mit.edu	36	12	27001907	27001907	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A03F-01A-11W-A096-10	TCGA-AA-A03F-11A-12W-A096-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001171888	exon4	c.G360A	p.P120P	.	.	.
KCNA5	3741	broad.mit.edu	36	12	5024070	5024070	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A03F-01A-11W-A096-10	TCGA-AA-A03F-11A-12W-A096-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_002234	exon1	c.G496T	p.D166Y	.	.	.
ACVR1B	91	broad.mit.edu	36	12	50661085	50661085	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A03F-01A-11W-A096-10	TCGA-AA-A03F-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_020327	exon4	c.G490A	p.G164S	.	.	.
CHD4	1108	broad.mit.edu	36	12	6571844	6571844	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A03F-01A-11W-A096-10	TCGA-AA-A03F-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001273	exon19	c.G2924A	p.R975H	.	.	.
C12orf12	196477	broad.mit.edu	36	12	89872174	89872174	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A03F-01A-11W-A096-10	TCGA-AA-A03F-11A-12W-A096-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_152638	exon1	c.G477A	p.P159P	.	.	.
ING1	3621	broad.mit.edu	36	13	110170026	110170026	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A03F-01A-11W-A096-10	TCGA-AA-A03F-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_198219	exon2	c.C586T	p.R196X	.	.	.
FRY	10129	broad.mit.edu	36	13	31766604	31766604	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A03F-01A-11W-A096-10	TCGA-AA-A03F-11A-12W-A096-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_023037	exon60	c.T8680C	p.S2894P	.	.	.
OR4K15	81127	broad.mit.edu	36	14	19514223	19514223	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A03F-01A-11W-A096-10	TCGA-AA-A03F-11A-12W-A096-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001005486	exon1	c.C706A	p.L236I	.	.	.
EAPP	55837	broad.mit.edu	36	14	34055289	34055289	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A03F-01A-11W-A096-10	TCGA-AA-A03F-11A-12W-A096-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_018453	exon6	c.A836G	p.N279S	.	.	.
PCNX	22990	broad.mit.edu	36	14	70638545	70638545	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A03F-01A-11W-A096-10	TCGA-AA-A03F-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_014982	exon31	c.C5675T	p.A1892V	.	.	.
C14orf148	122945	broad.mit.edu	36	14	76943737	76943737	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A03F-01A-11W-A096-10	TCGA-AA-A03F-11A-12W-A096-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_138791	exon3	c.G354A	p.E118E	.	.	.
MAGEL2	54551	broad.mit.edu	36	15	21441986	21441987	+	Frame_Shift_Ins	INS	-	G	G	novel	unknown	TCGA-AA-A03F-01A-11W-A096-10	TCGA-AA-A03F-11A-12W-A096-10	-	-	-	-	-	-	Unknown	Wildtype	None	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_019066	exon1	c.1997_1998insC	p.Q666fs	.	.	.
SEMA6D	80031	broad.mit.edu	36	15	45844501	45844501	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A03F-01A-11W-A096-10	TCGA-AA-A03F-11A-12W-A096-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_153619	exon13	c.C1383T	p.N461N	.	.	.
SHC4	399694	broad.mit.edu	36	15	47042162	47042162	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A03F-01A-11W-A096-10	TCGA-AA-A03F-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_203349	exon1	c.C343T	p.P115S	.	.	.
CIITA	4261	broad.mit.edu	36	16	10909365	10909365	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A03F-01A-11W-A096-10	TCGA-AA-A03F-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_000246	exon11	c.C2515T	p.R839C	.	.	.
PHKB	5257	broad.mit.edu	36	16	46106978	46106978	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A03F-01A-11W-A096-10	TCGA-AA-A03F-11A-12W-A096-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001031835	exon7	c.T538G	p.S180A	.	.	.
BRD7	29117	broad.mit.edu	36	16	48925026	48925026	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A03F-01A-11W-A096-10	TCGA-AA-A03F-11A-12W-A096-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_013263	exon8	c.A971G	p.E324G	.	.	.
HYDIN	54768	broad.mit.edu	36	16	69619232	69619232	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A03F-01A-11W-A096-10	TCGA-AA-A03F-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_032821	exon20	c.G2816A	p.R939Q	.	.	.
GIT1	28964	broad.mit.edu	36	17	24926993	24926993	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A03F-01A-11W-A096-10	TCGA-AA-A03F-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_014030	exon16	c.C1715T	p.P572L	.	.	.
CCL7	6354	broad.mit.edu	36	17	29622382	29622382	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A03F-01A-11W-A096-10	TCGA-AA-A03F-11A-12W-A096-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_006273	exon2	c.C181T	p.R61W	.	.	.
UNC45B	146862	broad.mit.edu	36	17	30537441	30537441	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A03F-01A-11W-A096-10	TCGA-AA-A03F-11A-12W-A096-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_173167	exon20	c.G2546T	p.W849L	.	.	.
GJC1	10052	broad.mit.edu	36	17	40237694	40237694	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A03F-01A-11W-A096-10	TCGA-AA-A03F-11A-12W-A096-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_005497	exon3	c.C1018T	p.R340W	.	.	.
CAMTA2	23125	broad.mit.edu	36	17	4823843	4823843	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A03F-01A-11W-A096-10	TCGA-AA-A03F-11A-12W-A096-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_015099	exon9	c.C1498A	p.P500T	.	.	.
ABCA10	10349	broad.mit.edu	36	17	64661638	64661638	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A03F-01A-11W-A096-10	TCGA-AA-A03F-11A-12W-A096-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_080282	exon33	c.G3894T	p.M1298I	.	.	.
PGS1	9489	broad.mit.edu	36	17	73911456	73911456	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A03F-01A-11W-A096-10	TCGA-AA-A03F-11A-12W-A096-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_024419	exon7	c.G1093T	p.D365Y	.	.	.
RPTOR	57521	broad.mit.edu	36	17	76410607	76410607	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A03F-01A-11W-A096-10	TCGA-AA-A03F-11A-12W-A096-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_020761	exon8	c.G902A	p.R301H	.	.	.
SOX9	6662	broad.mit.edu	36	17	67631860	67631860	+	Frame_Shift_Del	DEL	T	-	-	novel	unknown	TCGA-AA-A03F-01A-11W-A096-10	TCGA-AA-A03F-11A-12W-A096-10	T	T	T	-	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_000346	exon3	c.1267delT	p.F423fs	.	.	.
CCDC11	220136	broad.mit.edu	36	18	46007970	46007970	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A03F-01A-11W-A096-10	TCGA-AA-A03F-11A-12W-A096-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_145020	exon8	c.C1324T	p.R442C	.	.	.
CETN1	1068	broad.mit.edu	36	18	570537	570537	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A03F-01A-11W-A096-10	TCGA-AA-A03F-11A-12W-A096-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_004066	exon1	c.C129T	p.D43D	.	.	.
PDE4A	5141	broad.mit.edu	36	19	10438591	10438591	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A03F-01A-11W-A096-10	TCGA-AA-A03F-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001111309	exon15	c.C1772T	p.P591L	.	.	.
ZNF101	94039	broad.mit.edu	36	19	19651274	19651274	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A03F-01A-11W-A096-10	TCGA-AA-A03F-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_033204	exon4	c.G476A	p.R159H	.	.	.
ZNF99	7652	broad.mit.edu	36	19	22743040	22743040	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-A03F-01A-11W-A096-10	TCGA-AA-A03F-11A-12W-A096-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001080409	exon3	c.A196T	p.I66F	.	.	.
PLIN4	729359	broad.mit.edu	36	19	4463245	4463245	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A03F-01A-11W-A096-10	TCGA-AA-A03F-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001080400	exon3	c.C1685T	p.A562V	.	.	.
LRRC4B	94030	broad.mit.edu	36	19	55713087	55713087	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A03F-01A-11W-A096-10	TCGA-AA-A03F-11A-12W-A096-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001080457	exon3	c.C1695T	p.L565L	.	.	.
ZNF175	7728	broad.mit.edu	36	19	56783188	56783188	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A03F-01A-11W-A096-10	TCGA-AA-A03F-11A-12W-A096-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_007147	exon5	c.G1792A	p.G598S	.	.	.
LILRB3	11025	broad.mit.edu	36	19	59437937	59437937	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A03F-01A-11W-A096-10	TCGA-AA-A03F-11A-12W-A096-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_024318	exon3	c.C132T	p.P44P	.	.	.
COL5A3	50509	broad.mit.edu	36	19	9949142	9949142	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A03F-01A-11W-A096-10	TCGA-AA-A03F-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_015719	exon43	c.C3133T	p.R1045C	.	.	.
SLC6A17	388662	broad.mit.edu	36	1	110538773	110538773	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A03F-01A-11W-A096-10	TCGA-AA-A03F-11A-12W-A096-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001010898	exon9	c.C1349T	p.T450M	.	.	.
CLCN6	1185	broad.mit.edu	36	1	11821008	11821008	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A03F-01A-11W-A096-10	TCGA-AA-A03F-11A-12W-A096-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001286	exon21	c.C2325T	p.A775A	.	.	.
PDE4DIP	9659	broad.mit.edu	36	1	143579417	143579417	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A03F-01A-11W-A096-10	TCGA-AA-A03F-11A-12W-A096-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001198832	exon35	c.C5061T	p.T1687T	.	.	.
ATAD3A	55210	broad.mit.edu	36	1	1449567	1449567	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A03F-01A-11W-A096-10	TCGA-AA-A03F-11A-12W-A096-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_018188	exon11	c.G1285A	p.V429M	.	.	.
FLG	2312	broad.mit.edu	36	1	150546390	150546390	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A03F-01A-11W-A096-10	TCGA-AA-A03F-11A-12W-A096-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_002016	exon3	c.G7596A	p.S2532S	.	.	.
HSPA6	3310	broad.mit.edu	36	1	159762695	159762695	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A03F-01A-11W-A096-10	TCGA-AA-A03F-11A-12W-A096-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_002155	exon1	c.A1623C	p.K541N	.	.	.
FASLG	356	broad.mit.edu	36	1	170901652	170901652	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A03F-01A-11W-A096-10	TCGA-AA-A03F-11A-12W-A096-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_000639	exon4	c.C719T	p.A240V	.	.	.
PARP1	142	broad.mit.edu	36	1	224620352	224620352	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A03F-01A-11W-A096-10	TCGA-AA-A03F-11A-12W-A096-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001618	exon18	c.G2431A	p.A811T	 PARP1,breast,NS,Substitution - coding silent,+2 	.	.
PGBD5	79605	broad.mit.edu	36	1	228579901	228579901	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A03F-01A-11W-A096-10	TCGA-AA-A03F-11A-12W-A096-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_024554	exon1	c.C90T	p.P30P	.	.	.
HTR1D	3352	broad.mit.edu	36	1	23392500	23392500	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A03F-01A-11W-A096-10	TCGA-AA-A03F-11A-12W-A096-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_000864	exon1	c.C800T	p.S267L	.	.	.
ZMYM6	9204	broad.mit.edu	36	1	35225585	35225585	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A03F-01A-11W-A096-10	TCGA-AA-A03F-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_007167	exon16	c.G3685A	p.D1229N	.	.	.
ALG6	29929	broad.mit.edu	36	1	63652368	63652368	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A03F-01A-11W-A096-10	TCGA-AA-A03F-11A-12W-A096-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_013339	exon10	c.A865C	p.K289Q	.	.	.
PTGER3	5733	broad.mit.edu	36	1	71285526	71285526	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A03F-01A-11W-A096-10	TCGA-AA-A03F-11A-12W-A096-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_198715	exon1	c.C323A	p.P108Q	.	.	.
DPYD	1806	broad.mit.edu	36	1	97754050	97754050	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A03F-01A-11W-A096-10	TCGA-AA-A03F-11A-12W-A096-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_000110	exon13	c.A1560C	p.E520D	.	.	.
CD93	22918	broad.mit.edu	36	20	23013956	23013956	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-AA-A03F-01A-11W-A096-10	TCGA-AA-A03F-11A-12W-A096-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_012072	exon1	c.C874G	p.R292G	.	.	.
PHACTR3	116154	broad.mit.edu	36	20	57751584	57751584	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A03F-01A-11W-A096-10	TCGA-AA-A03F-11A-12W-A096-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_080672	exon2	c.G146A	p.R49H	.	.	.
ZNF512B	57473	broad.mit.edu	36	20	62068058	62068058	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A03F-01A-11W-A096-10	TCGA-AA-A03F-11A-12W-A096-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_020713	exon5	c.C914T	p.P305L	.	.	.
PCNT	5116	broad.mit.edu	36	21	46599799	46599799	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A03F-01A-11W-A096-10	TCGA-AA-A03F-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_006031	exon12	c.G1766A	p.S589N	.	.	.
TOM1	10043	broad.mit.edu	36	22	34056356	34056356	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A03F-01A-11W-A096-10	TCGA-AA-A03F-11A-12W-A096-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001135730	exon7	c.G647A	p.C216Y	.	.	.
FBLN1	2192	broad.mit.edu	36	22	44337780	44337780	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-AA-A03F-01A-11W-A096-10	TCGA-AA-A03F-11A-12W-A096-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001996	exon15	c.G2022C	p.K674N	.	.	.
TBC1D8	11138	broad.mit.edu	36	2	100990980	100990980	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A03F-01A-11W-A096-10	TCGA-AA-A03F-11A-12W-A096-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001102426	exon20	c.C3158T	p.P1053L	.	.	.
ST6GAL2	84620	broad.mit.edu	36	2	106789675	106789675	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A03F-01A-11W-A096-10	TCGA-AA-A03F-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001142351	exon6	c.G1481A	p.R494H	.	.	.
LCT	3938	broad.mit.edu	36	2	136291848	136291848	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A03F-01A-11W-A096-10	TCGA-AA-A03F-11A-12W-A096-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_002299	exon6	c.C1240T	p.R414C	.	.	.
OTOF	9381	broad.mit.edu	36	2	26551778	26551778	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A03F-01A-11W-A096-10	TCGA-AA-A03F-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_194323	exon8	c.G838A	p.D280N	.	.	.
CLIP4	79745	broad.mit.edu	36	2	29220191	29220191	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A03F-01A-11W-A096-10	TCGA-AA-A03F-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_024692	exon7	c.C761T	p.A254V	.	.	.
POLR1A	25885	broad.mit.edu	36	2	86112110	86112110	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A03F-01A-11W-A096-10	TCGA-AA-A03F-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_015425	exon30	c.G4432A	p.A1478T	.	.	.
PIK3CA	5290	broad.mit.edu	36	3	180418785	180418785	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A03F-01A-11W-A096-10	TCGA-AA-A03F-11A-12W-A096-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_006218	exon10	c.G1633A	p.E545K	 PIK3CA,urinary_tract,bladder,Substitution - Missense,0 	.	.
TGFBR2	7048	broad.mit.edu	36	3	30688647	30688647	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A03F-01A-11W-A096-10	TCGA-AA-A03F-11A-12W-A096-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_003242	exon4	c.T968C	p.L323P	.	.	.
UBA3	9039	broad.mit.edu	36	3	69188458	69188458	+	Silent	SNP	T	G	G	novel	unknown	TCGA-AA-A03F-01A-11W-A096-10	TCGA-AA-A03F-11A-12W-A096-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_198195	exon13	c.A1036C	p.R346R	.	.	.
ADCY5	111	broad.mit.edu	36	3	124648972	124648972	+	Frame_Shift_Del	DEL	G	-	-	novel	unknown	TCGA-AA-A03F-01A-11W-A096-10	TCGA-AA-A03F-11A-12W-A096-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_183357	exon1	c.1111delC	p.Q371fs	.	.	.
MANBA	4126	broad.mit.edu	36	4	103780042	103780042	+	Silent	SNP	G	C	C	novel	unknown	TCGA-AA-A03F-01A-11W-A096-10	TCGA-AA-A03F-11A-12W-A096-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_005908	exon14	c.C1890G	p.V630V	.	.	.
CASP6	839	broad.mit.edu	36	4	110838358	110838358	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A03F-01A-11W-A096-10	TCGA-AA-A03F-11A-12W-A096-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001226	exon3	c.G99A	p.P33P	.	.	.
FBXW7	55294	broad.mit.edu	36	4	153468834	153468834	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A03F-01A-11W-A096-10	TCGA-AA-A03F-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_018315	exon8	c.G1154A	p.R385H	 FBXW7,large_intestine,NS,Substitution - Missense,0 	.	.
DCHS2	54798	broad.mit.edu	36	4	155377438	155377438	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A03F-01A-11W-A096-10	TCGA-AA-A03F-11A-12W-A096-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_017639	exon25	c.C6451A	p.H2151N	.	.	.
ZNF721	170960	broad.mit.edu	36	4	427166	427166	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A03F-01A-11W-A096-10	TCGA-AA-A03F-11A-12W-A096-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_133474	exon3	c.G1090T	p.E364X	.	.	.
YTHDC1	91746	broad.mit.edu	36	4	68885737	68885737	+	Silent	SNP	A	C	C	novel	unknown	TCGA-AA-A03F-01A-11W-A096-10	TCGA-AA-A03F-11A-12W-A096-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001031732	exon4	c.T486G	p.R162R	.	.	.
PDHA2	5161	broad.mit.edu	36	4	96980348	96980348	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A03F-01A-11W-A096-10	TCGA-AA-A03F-11A-12W-A096-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_005390	exon1	c.C24T	p.R8R	.	.	.
APC	324	broad.mit.edu	36	5	112201603	112201603	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A03F-01A-11W-A096-10	TCGA-AA-A03F-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001127511	exon14	c.C2359T	p.R787X	 APC,large_intestine,right,Substitution - Nonsense,0 	.	.
APC	324	broad.mit.edu	36	5	112203538	112203538	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A03F-01A-11W-A096-10	TCGA-AA-A03F-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001127511	exon14	c.C4294T	p.R1432X	 APC,large_intestine,rectum,Substitution - Nonsense,0 	.	.
FBN2	2201	broad.mit.edu	36	5	127701696	127701696	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A03F-01A-11W-A096-10	TCGA-AA-A03F-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001999	exon27	c.C3490T	p.R1164C	.	.	.
SLC4A9	83697	broad.mit.edu	36	5	139722790	139722790	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A03F-01A-11W-A096-10	TCGA-AA-A03F-11A-12W-A096-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_031467	exon7	c.C917A	p.T306K	.	.	.
PCDHAC1	56135	broad.mit.edu	36	5	140287202	140287202	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A03F-01A-11W-A096-10	TCGA-AA-A03F-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_031882	exon1	c.G541A	p.E181K	.	.	.
PCDHGA3	56112	broad.mit.edu	36	5	140703963	140703963	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A03F-01A-11W-A096-10	TCGA-AA-A03F-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_018916	exon1	c.C179T	p.A60V	.	.	.
WWC1	23286	broad.mit.edu	36	5	167815002	167815002	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A03F-01A-11W-A096-10	TCGA-AA-A03F-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001161661	exon19	c.C2722T	p.R908W	.	.	.
ASCC3	10973	broad.mit.edu	36	6	101206165	101206165	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A03F-01A-11W-A096-10	TCGA-AA-A03F-11A-12W-A096-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_006828	exon19	c.C3067A	p.Q1023K	.	.	.
HACE1	57531	broad.mit.edu	36	6	105346089	105346089	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A03F-01A-11W-A096-10	TCGA-AA-A03F-11A-12W-A096-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_020771	exon11	c.A1057G	p.R353G	.	.	.
TAAR2	9287	broad.mit.edu	36	6	132980625	132980625	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A03F-01A-11W-A096-10	TCGA-AA-A03F-11A-12W-A096-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001033080	exon2	c.C413T	p.A138V	.	.	.
TIAM2	26230	broad.mit.edu	36	6	155492062	155492062	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A03F-01A-11W-A096-10	TCGA-AA-A03F-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_012454	exon3	c.G13A	p.D5N	.	.	.
FNDC1	84624	broad.mit.edu	36	6	159573945	159573945	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A03F-01A-11W-A096-10	TCGA-AA-A03F-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_032532	exon11	c.C2411T	p.T804M	.	.	.
DUSP22	56940	broad.mit.edu	36	6	256894	256894	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A03F-01A-11W-A096-10	TCGA-AA-A03F-11A-12W-A096-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_020185	exon3	c.G70T	p.E24X	.	.	.
OR10C1	442194	broad.mit.edu	36	6	29516426	29516426	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A03F-01A-11W-A096-10	TCGA-AA-A03F-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_013941	exon1	c.C655T	p.R219C	.	.	.
ZNF318	24149	broad.mit.edu	36	6	43430399	43430399	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A03F-01A-11W-A096-10	TCGA-AA-A03F-11A-12W-A096-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_014345	exon4	c.G2651A	p.R884H	.	.	.
LMBRD1	55788	broad.mit.edu	36	6	70467409	70467409	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A03F-01A-11W-A096-10	TCGA-AA-A03F-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_018368	exon12	c.G1157A	p.R386Q	.	.	.
COL12A1	1303	broad.mit.edu	36	6	75889771	75889771	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AA-A03F-01A-11W-A096-10	TCGA-AA-A03F-11A-12W-A096-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_004370	exon43	c.G6941C	p.R2314P	.	.	.
SNX14	57231	broad.mit.edu	36	6	86313815	86313815	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A03F-01A-11W-A096-10	TCGA-AA-A03F-11A-12W-A096-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_020468	exon9	c.C800T	p.P267L	.	.	.
TMEM168	64418	broad.mit.edu	36	7	112212001	112212001	+	Nonsense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-A03F-01A-11W-A096-10	TCGA-AA-A03F-11A-12W-A096-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_022484	exon2	c.T116A	p.L39X	.	.	.
AMZ1	155185	broad.mit.edu	36	7	2708962	2708962	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A03F-01A-11W-A096-10	TCGA-AA-A03F-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_133463	exon3	c.G385A	p.V129I	.	.	.
RSPH10B	222967	broad.mit.edu	36	7	6764014	6764014	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A03F-01A-11W-A096-10	TCGA-AA-A03F-11A-12W-A096-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_173565	exon3	c.C181T	p.R61C	.	.	.
KIAA1324L	222223	broad.mit.edu	36	7	86406076	86406076	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A03F-01A-11W-A096-10	TCGA-AA-A03F-11A-12W-A096-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_152748	exon6	c.C483T	p.D161D	.	.	.
DLC1	10395	broad.mit.edu	36	8	12992160	12992160	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A03F-01A-11W-A096-10	TCGA-AA-A03F-11A-12W-A096-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_182643	exon15	c.C4046T	p.S1349L	.	.	.
MYOM2	9172	broad.mit.edu	36	8	2080299	2080299	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A03F-01A-11W-A096-10	TCGA-AA-A03F-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_003970	exon37	c.C4385T	p.A1462V	.	.	.
GSR	2936	broad.mit.edu	36	8	30657966	30657966	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A03F-01A-11W-A096-10	TCGA-AA-A03F-11A-12W-A096-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001195102	exon11	c.A1329C	p.E443D	.	.	.
RP1	6101	broad.mit.edu	36	8	55696226	55696226	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A03F-01A-11W-A096-10	TCGA-AA-A03F-11A-12W-A096-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_006269	exon2	c.C147T	p.G49G	.	.	.
FAM110B	90362	broad.mit.edu	36	8	59222273	59222273	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A03F-01A-11W-A096-10	TCGA-AA-A03F-11A-12W-A096-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_147189	exon5	c.C930T	p.S310S	.	.	.
ZFHX4	79776	broad.mit.edu	36	8	77924314	77924314	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-A03F-01A-11W-A096-10	TCGA-AA-A03F-11A-12W-A096-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_024721	exon8	c.T3657C	p.C1219C	.	.	.
ASTN2	23245	broad.mit.edu	36	9	119016767	119016767	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A03F-01A-11W-A096-10	TCGA-AA-A03F-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_014010	exon3	c.C706T	p.R236C	.	.	.
TSC1	7248	broad.mit.edu	36	9	134769012	134769012	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-A03F-01A-11W-A096-10	TCGA-AA-A03F-11A-12W-A096-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001162426	exon17	c.A2052G	p.S684S	.	.	.
ANAPC2	29882	broad.mit.edu	36	9	139195184	139195184	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A03F-01A-11W-A096-10	TCGA-AA-A03F-11A-12W-A096-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_013366	exon8	c.G1487A	p.R496Q	.	.	.
PCSK5	5125	broad.mit.edu	36	9	77963787	77963787	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A03F-01A-11W-A096-10	TCGA-AA-A03F-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001190482	exon12	c.G1499A	p.R500H	.	.	.
SLC28A3	64078	broad.mit.edu	36	9	86097482	86097482	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-A03F-01A-11W-A096-10	TCGA-AA-A03F-11A-12W-A096-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_022127	exon11	c.T944A	p.V315D	.	.	.
ARMCX1	51309	broad.mit.edu	36	X	100695003	100695003	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A03F-01A-11W-A096-10	TCGA-AA-A03F-11A-12W-A096-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_016608	exon4	c.C434A	p.P145Q	.	.	.
ODZ1	10178	broad.mit.edu	36	X	123855882	123855882	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A03F-01A-11W-A096-10	TCGA-AA-A03F-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_014253	exon3	c.G479A	p.G160D	.	.	.
ENOX2	10495	broad.mit.edu	36	X	129627333	129627333	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A03F-01A-11W-A096-10	TCGA-AA-A03F-11A-12W-A096-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_182314	exon10	c.C1066T	p.R356W	.	.	.
GPR112	139378	broad.mit.edu	36	X	135307768	135307768	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A03F-01A-11W-A096-10	TCGA-AA-A03F-11A-12W-A096-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_153834	exon20	c.C8247T	p.T2749T	.	.	.
GABRA3	2556	broad.mit.edu	36	X	151264723	151264723	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A03F-01A-11W-A096-10	TCGA-AA-A03F-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_000808	exon3	c.G248A	p.R83Q	.	.	.
PTCHD1	139411	broad.mit.edu	36	X	23320584	23320584	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A03F-01A-11W-A096-10	TCGA-AA-A03F-11A-12W-A096-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_173495	exon3	c.G1028T	p.G343V	.	.	.
MXRA5	25878	broad.mit.edu	36	X	3238955	3238955	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A03F-01A-11W-A096-10	TCGA-AA-A03F-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_015419	exon7	c.C7289T	p.T2430M	.	.	.
CLCN5	1184	broad.mit.edu	36	X	49737805	49737805	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-A03F-01A-11W-A096-10	TCGA-AA-A03F-11A-12W-A096-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001127899	exon11	c.C1095A	p.I365I	.	.	.
GDPD2	54857	broad.mit.edu	36	X	69566532	69566532	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A03F-01A-11W-A096-10	TCGA-AA-A03F-11A-12W-A096-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001171193	exon11	c.C964T	p.R322W	.	.	.
TAF1	6872	broad.mit.edu	36	X	70515521	70515521	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-A03F-01A-11W-A096-10	TCGA-AA-A03F-11A-12W-A096-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_138923	exon8	c.A1272T	p.K424N	.	.	.
ATP7A	538	broad.mit.edu	36	X	77175963	77175963	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A03F-01A-11W-A096-10	TCGA-AA-A03F-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_000052	exon17	c.G3499A	p.A1167T	.	.	.
PCDH11X	27328	broad.mit.edu	36	X	90977688	90977688	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A03F-01A-11W-A096-10	TCGA-AA-A03F-11A-12W-A096-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_032968	exon1	c.G529A	p.E177K	.	.	.
