Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	TTotCov	TVarCov	NTotCov	NVarCov	Trna_tot	Trna_ref	Trna_var	Trna_alt1	Trna_alt2
KLHL17	339451	ucsc.edu	37	1	897356	897356	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	48	5	137	0	2	2	0	0	0
KIAA1751	85452	ucsc.edu	37	1	1891458	1891458	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	18	4	49	0	0	0	0	0	0
PANK4	55229	ucsc.edu	37	1	2450707	2450707	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	30	4	56	0	6	6	0	0	0
NPHP4	261734	ucsc.edu	37	1	5923984	5923984	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	31	4	71	0	5	5	0	0	0
CHD5	26038	ucsc.edu	37	1	6211114	6211114	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	40	4	64	0	0	0	0	0	0
ACOT7	11332	ucsc.edu	37	1	6355008	6355008	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	25	4	77	1	40	40	0	0	0
MASP2	10747	ucsc.edu	37	1	11103024	11103024	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	52	5	127	0	0	0	0	0	0
VPS13D	55187	ucsc.edu	37	1	12294416	12294416	+	Silent	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	46	5	94	1	0	0	0	0	0
VPS13D	55187	ucsc.edu	37	1	12418531	12418531	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	40	4	92	1	9	9	0	0	0
PLEKHM2	23207	ucsc.edu	37	1	16053935	16053935	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	14	4	18	0	23	23	0	0	0
CLCNKB	1188	bcgsc.ca	37	1	16378015	16378015	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	135	9	321	1	1	1	0	0	0
NECAP2	55707	ucsc.edu	37	1	16767269	16767269	+	Missense_Mutation	SNP	G	G	T	rs145414698	alternate_allele	TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	47	6	93	0	47	47	0	0	0
ACTL8	81569	ucsc.edu	37	1	18152505	18152505	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	25	4	67	0	0	0	0	0	0
EMC1	23065	ucsc.edu	37	1	19546167	19546167	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	28	5	78	0	14	14	0	0	0
AKR7L	246181	ucsc.edu	37	1	19597050	19597050	+	RNA	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	22	4	69	0	0	0	0	0	0
KIF17	57576	ucsc.edu	37	1	21039979	21039979	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	33	4	60	0	0	0	0	0	0
HSPG2	3339	ucsc.edu	37	1	22150681	22150681	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	28	4	52	1	52	52	0	0	0
HSPG2	3339	ucsc.edu	37	1	22205098	22205098	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	37	4	90	0	36	36	0	0	0
C1QB	713	ucsc.edu	37	1	22986004	22986004	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	27	4	73	0	104	104	0	0	0
GRHL3	57822	ucsc.edu	37	1	24663602	24663602	+	Missense_Mutation	SNP	C	C	A	rs149044763	alternate_allele	TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	36	4	76	1	0	0	0	0	0
SLC30A2	7780	ucsc.edu	37	1	26368246	26368246	+	Silent	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	39	4	72	0	12	12	0	0	0
RPS6KA1	6195	ucsc.edu	37	1	26873706	26873706	+	Silent	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	29	4	60	0	25	25	0	0	0
WASF2	10163	ucsc.edu	37	1	27736431	27736431	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	53	5	93	0	20	20	0	0	0
SNHG12	85028	ucsc.edu	37	1	28907349	28907349	+	RNA	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	30	4	61	0	5	5	0	0	0
BAI2	576	ucsc.edu	37	1	32207655	32207655	+	Silent	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	44	5	101	1	0	0	0	0	0
PHC2	1912	bcgsc.ca	37	1	33797902	33797902	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	71	6	140	0	90	90	0	0	0
CSMD2	114784	ucsc.edu;bcgsc.ca	37	1	34006188	34006188	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	38	6	114	1	0	0	0	0	0
CSMD2	114784	ucsc.edu	37	1	34100821	34100821	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	41	4	69	0	0	0	0	0	0
AGO1	26523	ucsc.edu;bcgsc.ca	37	1	36349040	36349040	+	Silent	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	24	5	35	0	0	0	0	0	0
COL8A2	1296	ucsc.edu	37	1	36563301	36563301	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	39	4	95	0	0	0	0	0	0
COL8A2	1296	ucsc.edu	37	1	36564442	36564442	+	Silent	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	28	4	74	0	3	3	0	0	0
SH3D21	79729	ucsc.edu	37	1	36785878	36785878	+	Silent	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	28	4	84	0	2	2	0	0	0
FHL3	2275	ucsc.edu	37	1	38463462	38463462	+	Silent	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	38	4	101	0	12	12	0	0	0
NT5C1A	84618	ucsc.edu	37	1	40126901	40126901	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	43	4	68	0	0	0	0	0	0
COL9A2	1298	ucsc.edu	37	1	40775945	40775945	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	54	5	134	0	0	0	0	0	0
RIMS3	9783	ucsc.edu	37	1	41107430	41107430	+	Silent	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	42	4	78	0	0	0	0	0	0
ATP6V0B	533	ucsc.edu	37	1	44442493	44442493	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	43	4	83	0	0	0	0	0	0
KLF17	128209	ucsc.edu	37	1	44596412	44596412	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	43	5	89	0	0	0	0	0	0
RNF220	55182	ucsc.edu;bcgsc.ca	37	1	44877782	44877782	+	Silent	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	41	5	82	0	0	0	0	0	0
ZSWIM5	57643	ucsc.edu	37	1	45485820	45485820	+	Splice_Site	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	36	4	62	0	0	0	0	0	0
ZSWIM5	57643	ucsc.edu	37	1	45516768	45516768	+	Silent	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	52	5	77	0	1	1	0	0	0
LURAP1	541468	ucsc.edu	37	1	46669215	46669215	+	Silent	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	33	4	76	0	1	1	0	0	0
CYP4Z1	199974	bcgsc.ca	37	1	47571882	47571882	+	Silent	SNP	C	C	A	rs201816403	alternate_allele	TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	90	9	104	0	0	0	0	0	0
STIL	6491	ucsc.edu	37	1	47775989	47775989	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	39	4	59	0	1	1	0	0	0
ANKRD13C	81573	bcgsc.ca	37	1	70771959	70771959	+	Silent	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	102	8	114	0	14	14	0	0	0
USP33	23032	ucsc.edu	37	1	78191408	78191408	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	41	4	59	0	15	15	0	0	0
FUBP1	8880	ucsc.edu	37	1	78425923	78425923	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	43	4	66	0	49	49	0	0	0
DNAJB4	11080	ucsc.edu	37	1	78481779	78481779	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	46	5	69	0	13	13	0	0	0
CLCA2	9635	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	86890015	86890015	+	Silent	SNP	C	C	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	55	35	47	0	0	0	0	0	0
CLCA4	22802	ucsc.edu	37	1	87029380	87029380	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	40	4	73	0	0	0	0	0	0
LRRC8D	55144	bcgsc.ca	37	1	90398642	90398642	+	Silent	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	85	7	76	0	8	8	0	0	0
C1orf146	388649	ucsc.edu	37	1	92709866	92709866	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	32	4	27	0	0	0	0	0	0
EVI5	7813	bcgsc.ca	37	1	93070928	93070928	+	Missense_Mutation	SNP	C	C	A	rs201454672	alternate_allele	TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	110	7	149	0	2	2	0	0	0
ACTG1P4	648740	ucsc.edu	37	1	104113087	104113087	+	RNA	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	32	4	57	1	0	0	0	0	0
ATXN7L2	127002	ucsc.edu	37	1	110032735	110032735	+	Silent	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	41	4	76	1	9	9	0	0	0
PPM1J	333926	ucsc.edu	37	1	113253117	113253117	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	40	4	111	0	4	4	0	0	0
LRIG2	9860	ucsc.edu	37	1	113662126	113662126	+	Silent	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	44	5	68	0	0	0	0	0	0
MAGI3	260425	ucsc.edu	37	1	114226622	114226622	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	18	4	11	0	5	5	0	0	0
PHTF1	10745	ucsc.edu	37	1	114253017	114253017	+	Silent	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	42	5	77	1	4	4	0	0	0
TRIM33	51592	ucsc.edu	37	1	114964246	114964246	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	41	4	60	0	0	0	0	0	0
NOTCH2	4853	ucsc.edu	37	1	120484162	120484162	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	34	4	61	0	0	0	0	0	0
ANKRD35	148741	ucsc.edu	37	1	145560240	145560240	+	Silent	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	43	4	95	0	0	0	0	0	0
PDIA3P	171423	ucsc.edu	37	1	146649818	146649818	+	RNA	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	41	4	75	0	91	91	0	0	0
APH1A	51107	ucsc.edu	37	1	150239044	150239044	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	32	4	54	0	0	0	0	0	0
ARNT	405	bcgsc.ca	37	1	150811975	150811975	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	106	7	143	0	17	17	0	0	0
GABPB2	126626	ucsc.edu	37	1	151090695	151090695	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	49	6	72	0	1	1	0	0	0
ZNF687	57592	ucsc.edu	37	1	151261675	151261675	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	36	4	95	0	7	7	0	0	0
CGN	57530	ucsc.edu	37	1	151506470	151506470	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	26	4	86	0	6	6	0	0	0
LCE1F	353137	ucsc.edu	37	1	152749188	152749188	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	60	6	96	0	0	0	0	0	0
S100A12	6283	ucsc.edu	37	1	153346988	153346988	+	Silent	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	74	7	138	0	2	2	0	0	0
ILF2	3608	ucsc.edu	37	1	153636546	153636546	+	Silent	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	25	4	57	1	101	101	0	0	0
SLC27A3	11000	ucsc.edu	37	1	153752337	153752337	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	42	4	92	0	34	34	0	0	0
TDRD10	126668	ucsc.edu	37	1	154479796	154479796	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	29	4	34	0	1	1	0	0	0
ADAR	103	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	154574741	154574741	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	41	24	94	0	24	5	19	0	0
ASH1L	55870	ucsc.edu	37	1	155451260	155451260	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	32	4	32	0	8	8	0	0	0
RRNAD1	51093	ucsc.edu	37	1	156704259	156704259	+	Silent	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	10	4	15	0	7	7	0	0	0
NTRK1	4914	ucsc.edu	37	1	156837906	156837906	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	50	5	149	0	0	0	0	0	0
NTRK1	4914	ucsc.edu	37	1	156845383	156845383	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	31	4	88	1	0	0	0	0	0
FCRL5	83416	ucsc.edu	37	1	157494192	157494192	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	61	6	138	0	0	0	0	0	0
CCDC19	25790	ucsc.edu	37	1	159846540	159846540	+	Splice_Site	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	29	4	62	0	0	0	0	0	0
IGSF8	93185	ucsc.edu	37	1	160062152	160062152	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	45	5	141	0	75	75	0	0	0
ALDH9A1	223	ucsc.edu	37	1	165652240	165652240	+	Silent	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	42	4	47	0	43	43	0	0	0
F5	2153	bcgsc.ca	37	1	169510884	169510884	+	Silent	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	136	9	122	0	0	0	0	0	0
RFWD2	64326	ucsc.edu	37	1	176132951	176132951	+	Silent	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	27	4	13	0	0	0	0	0	0
FAM5B	57795	ucsc.edu	37	1	177250093	177250093	+	Missense_Mutation	SNP	G	G	T	rs191738799	alternate_allele	TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	34	4	41	0	0	0	0	0	0
FAM20B	9917	ucsc.edu	37	1	179013096	179013096	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	45	5	102	0	4	4	0	0	0
KIAA1614	57710	ucsc.edu	37	1	180913533	180913533	+	Silent	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	57	6	136	1	1	1	0	0	0
NPL	80896	ucsc.edu	37	1	182775346	182775346	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	41	4	57	0	4	4	0	0	0
SHCBP1L	81626	ucsc.edu	37	1	182920476	182920476	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	37	4	39	0	0	0	0	0	0
HMCN1	83872	bcgsc.ca	37	1	185987425	185987425	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	82	7	56	0	0	0	0	0	0
PRG4	10216	ucsc.edu	37	1	186276665	186276665	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	43	4	65	0	0	0	0	0	0
TROVE2	6738	ucsc.edu	37	1	193051691	193051691	+	Splice_Site	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	23	4	18	0	0	0	0	0	0
F13B	2165	ucsc.edu	37	1	197021797	197021797	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	49	6	16	0	0	0	0	0	0
LHX9	56956	ucsc.edu	37	1	197890636	197890636	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	29	4	65	0	0	0	0	0	0
CACNA1S	779	ucsc.edu	37	1	201047027	201047027	+	Silent	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	28	4	48	1	0	0	0	0	0
PKP1	5317	ucsc.edu	37	1	201286754	201286754	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	36	5	52	0	0	0	0	0	0
MYOG	4656	ucsc.edu	37	1	203054693	203054693	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	38	4	86	0	0	0	0	0	0
RBBP5	5929	bcgsc.ca	37	1	205065870	205065870	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	114	8	265	0	9	9	0	0	0
TMCC2	9911	ucsc.edu;bcgsc.ca	37	1	205238607	205238607	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	68	8	126	0	0	0	0	0	0
NUAK2	81788	ucsc.edu	37	1	205272806	205272806	+	Silent	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	35	4	100	0	6	6	0	0	0
SLC41A1	254428	ucsc.edu	37	1	205767086	205767086	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	60	6	117	0	20	20	0	0	0
CTSE	1510	ucsc.edu	37	1	206328789	206328789	+	Missense_Mutation	SNP	C	C	A	rs141402875	alternate_allele	TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	48	5	63	0	89	89	0	0	0
C1orf116	79098	ucsc.edu	37	1	207196825	207196825	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	38	4	51	0	0	0	0	0	0
CR1	1378	ucsc.edu	37	1	207696977	207696977	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	36	4	68	0	0	0	0	0	0
PLXNA2	5362	ucsc.edu	37	1	208207859	208207859	+	Silent	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	35	4	87	0	5	5	0	0	0
PLXNA2	5362	ucsc.edu	37	1	208315682	208315682	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	33	4	75	0	0	0	0	0	0
TRAF3IP3	80342	bcgsc.ca	37	1	209953828	209953828	+	Silent	SNP	C	C	A	rs148709289	alternate_allele	TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	122	7	194	1	3	3	0	0	0
DIEXF	27042	ucsc.edu	37	1	210016967	210016967	+	Silent	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	42	4	62	0	9	9	0	0	0
RCOR3	55758	ucsc.edu	37	1	211477482	211477482	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	23	4	19	0	0	0	0	0	0
TMEM206	55248	bcgsc.ca	37	1	212583857	212583857	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	179	11	305	0	0	0	0	0	0
CENPF	1063	ucsc.edu	37	1	214828713	214828713	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	43	4	40	0	3	3	0	0	0
EPRS	2058	ucsc.edu	37	1	220154790	220154790	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	39	4	62	0	0	0	0	0	0
HHIPL2	79802	ucsc.edu	37	1	222717308	222717308	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	38	4	93	0	0	0	0	0	0
TLR5	7100	ucsc.edu	37	1	223286371	223286371	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	29	5	40	0	0	0	0	0	0
DNAH14	127602	ucsc.edu	37	1	225147911	225147911	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	26	4	22	0	1	1	0	0	0
OBSCN	84033	ucsc.edu	37	1	228459864	228459864	+	Silent	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	28	4	75	0	2	2	0	0	0
GALNT2	2590	ucsc.edu	37	1	230415163	230415163	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	42	4	81	0	17	17	0	0	0
TRIM67	440730	ucsc.edu	37	1	231337238	231337238	+	Silent	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	19	4	50	1	0	0	0	0	0
PCNXL2	80003	ucsc.edu	37	1	233344357	233344357	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	34	4	51	0	4	4	0	0	0
SLC35F3	148641	ucsc.edu	37	1	234458905	234458905	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	38	4	97	0	1	1	0	0	0
LYST	1130	bcgsc.ca	37	1	235840464	235840464	+	Silent	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	78	6	70	0	4	4	0	0	0
LYST	1130	ucsc.edu	37	1	235944306	235944306	+	Silent	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	29	4	28	0	0	0	0	0	0
NID1	4811	ucsc.edu	37	1	236195906	236195906	+	Silent	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	40	4	74	0	9	9	0	0	0
HEATR1	55127	bcgsc.ca	37	1	236746447	236746447	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	207	10	244	1	4	4	0	0	0
MTR	4548	ucsc.edu	37	1	237058766	237058766	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	10	4	19	0	6	6	0	0	0
RYR2	6262	ucsc.edu	37	1	237794821	237794821	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	21	4	28	0	0	0	0	0	0
RYR2	6262	ucsc.edu	37	1	237802363	237802363	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	39	4	44	0	0	0	0	0	0
CHRM3	1131	ucsc.edu	37	1	240071104	240071104	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	35	4	58	0	0	0	0	0	0
SDCCAG8	10806	ucsc.edu	37	1	243652398	243652398	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	22	4	40	0	8	8	0	0	0
SH3BP5L	80851	ucsc.edu	37	1	249108699	249108699	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	31	4	40	0	22	22	0	0	0
ARMC3	219681	ucsc.edu	37	10	23270567	23270567	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	38	4	36	0	3	3	0	0	0
THNSL1	79896	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	25312238	25312238	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	118	48	80	0	2	1	1	0	0
PTCHD3	374308	ucsc.edu	37	10	27702886	27702886	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	41	4	70	1	0	0	0	0	0
RET	5979	bcgsc.ca	37	10	43606777	43606777	+	Silent	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	114	8	132	0	0	0	0	0	0
ALOX5	240	bcgsc.ca	37	10	45938569	45938569	+	Silent	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	237	10	293	1	31	31	0	0	0
MARCH8	220972	ucsc.edu	37	10	46028621	46028621	+	Silent	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	48	5	54	0	12	12	0	0	0
SGMS1	259230	ucsc.edu	37	10	52103385	52103385	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	46	5	52	0	20	20	0	0	0
ANK3	288	bcgsc.ca	37	10	61832368	61832368	+	Silent	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	149	8	86	0	0	0	0	0	0
TYSND1	219743	ucsc.edu	37	10	71905219	71905219	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	13	4	22	0	21	21	0	0	0
SEC24C	9632	ucsc.edu	37	10	75519436	75519436	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	30	4	48	0	46	45	0	0	1
NDST2	8509	ucsc.edu	37	10	75564622	75564622	+	Silent	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	54	5	72	0	1	1	0	0	0
BEND3P3	650623	ucsc.edu;bcgsc.ca	37	10	81443803	81443803	+	RNA	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	45	6	34	0	4	4	0	0	0
CYP26A1	1592	ucsc.edu;bcgsc.ca	37	10	94834784	94834784	+	Silent	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	64	7	122	1	0	0	0	0	0
PDLIM1	9124	ucsc.edu	37	10	96997780	96997780	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	42	4	37	0	122	122	0	0	0
ZDHHC16	84287	bcgsc.ca	37	10	99212232	99212232	+	Silent	SNP	C	C	A	rs138262030	byfrequency;alternate_allele	TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	69	6	79	0	30	30	0	0	0
HPS6	79803	ucsc.edu	37	10	103825804	103825804	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	39	4	60	0	23	23	0	0	0
GSTO2	119391	ucsc.edu	37	10	106057441	106057441	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	51	5	50	0	5	5	0	0	0
SORCS3	22986	bcgsc.ca	37	10	106974208	106974208	+	Missense_Mutation	SNP	G	G	T	rs201158982	alternate_allele	TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	101	7	90	0	0	0	0	0	0
NRAP	4892	bcgsc.ca	37	10	115383376	115383376	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	164	9	150	0	0	0	0	0	0
NRAP	4892	bcgsc.ca	37	10	115402734	115402734	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	95	7	118	0	0	0	0	0	0
AFAP1L2	84632	ucsc.edu	37	10	116082936	116082936	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	15	4	12	0	0	0	0	0	0
GRK5	2869	ucsc.edu	37	10	121196330	121196330	+	Silent	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	39	4	56	0	5	5	0	0	0
DOCK1	1793	ucsc.edu	37	10	128788811	128788811	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	37	5	31	0	32	32	0	0	0
CYP2E1	1571	ucsc.edu;bcgsc.ca	37	10	135342119	135342119	+	Silent	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	83	9	97	0	0	0	0	0	0
RIC8A	60626	ucsc.edu	37	11	212423	212423	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	25	4	32	0	2	2	0	0	0
NLRP6	171389	ucsc.edu	37	11	281832	281832	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	51	5	70	0	0	0	0	0	0
MUC2	4583	ucsc.edu;bcgsc.ca	37	11	1077668	1077668	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	28	6	34	0	0	0	0	0	0
MUC2	4583	ucsc.edu	37	11	1081486	1081486	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	40	4	45	0	0	0	0	0	0
OR52B4	143496	ucsc.edu	37	11	4389301	4389301	+	Silent	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	39	4	14	0	0	0	0	0	0
OR52N5	390075	ucsc.edu	37	11	5799359	5799359	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	90	10	24	0	0	0	0	0	0
ST5	6764	bcgsc.ca	37	11	8752343	8752343	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	77	7	85	1	18	18	0	0	0
ASCL3	56676	ucsc.edu	37	11	8959455	8959455	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	51	5	108	0	0	0	0	0	0
GALNT18	374378	ucsc.edu	37	11	11454187	11454187	+	Silent	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	18	4	17	0	4	4	0	0	0
MICAL2	9645	bcgsc.ca	37	11	12262602	12262602	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	161	11	204	0	0	0	0	0	0
LIN7C	55327	bcgsc.ca	37	11	27528287	27528287	+	Missense_Mutation	SNP	C	C	A	rs147126784	alternate_allele	TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	109	8	139	1	2	2	0	0	0
KCNA4	3739	ucsc.edu	37	11	30032454	30032454	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	41	4	38	0	0	0	0	0	0
KIAA1549L	25758	ucsc.edu	37	11	33564230	33564230	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	44	5	55	0	0	0	0	0	0
ALX4	60529	ucsc.edu	37	11	44286631	44286631	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	43	4	58	0	0	0	0	0	0
CELF1	10658	bcgsc.ca	37	11	47505964	47505964	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	132	8	105	0	26	26	0	0	0
NUP160	23279	bcgsc.ca	37	11	47843669	47843669	+	Silent	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	82	6	66	0	12	12	0	0	0
PTPRJ	5795	ucsc.edu;bcgsc.ca	37	11	48166236	48166236	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	70	7	63	0	0	0	0	0	0
OR4A5	81318	hgsc.bcm.edu	37	11	51411515	51411515	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	38	16	5	1	0	0	0	0	0
CTNND1	1500	ucsc.edu	37	11	57559044	57559044	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	35	4	30	0	26	26	0	0	0
OR10W1	81341	bcgsc.ca	37	11	58034424	58034424	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	101	9	66	0	0	0	0	0	0
DTX4	23220	bcgsc.ca	37	11	58949284	58949284	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	144	9	187	2	14	14	0	0	0
MPEG1	219972	bcgsc.ca	37	11	58980270	58980270	+	Silent	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	175	10	144	1	12	12	0	0	0
MS4A14	84689	bcgsc.ca	37	11	60183164	60183164	+	Silent	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	167	9	77	0	1	1	0	0	0
MS4A14	84689	bcgsc.ca	37	11	60184082	60184082	+	Silent	SNP	C	C	A	rs80173276	byfrequency;alternate_allele	TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	103	9	38	0	1	1	0	0	0
TUT1	64852	ucsc.edu	37	11	62343438	62343438	+	Silent	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	30	4	67	0	22	22	0	0	0
TRPT1	83707	ucsc.edu	37	11	63992268	63992268	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	32	4	59	0	3	3	0	0	0
SLC22A11	55867	bcgsc.ca	37	11	64329844	64329844	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	154	9	208	0	13	13	0	0	0
NRXN2	9379	ucsc.edu	37	11	64390484	64390484	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	26	4	26	0	5	5	0	0	0
PYGM	5837	ucsc.edu	37	11	64519897	64519897	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	53	5	79	0	0	0	0	0	0
CDC42BPG	55561	ucsc.edu	37	11	64597339	64597339	+	Missense_Mutation	SNP	G	G	T	rs149394775	alternate_allele	TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	38	4	59	0	38	38	0	0	0
ATG2A	23130	ucsc.edu	37	11	64676840	64676840	+	Splice_Site	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	35	4	59	0	0	0	0	0	0
SNX15	29907	ucsc.edu	37	11	64802534	64802534	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	53	5	104	0	0	0	0	0	0
SLC22A20	440044	ucsc.edu	37	11	64981705	64981705	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	16	4	25	0	2	2	0	0	0
MALAT1	378938	bcgsc.ca	37	11	65266499	65266499	+	RNA	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	152	9	171	0	0	0	0	0	0
LTBP3	4054	ucsc.edu	37	11	65321591	65321591	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	43	4	83	0	130	130	0	0	0
EHBP1L1	254102	ucsc.edu	37	11	65349507	65349507	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	29	4	74	0	21	21	0	0	0
MAP3K11	4296	ucsc.edu	37	11	65380922	65380922	+	Silent	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	37	4	65	0	57	57	0	0	0
CST6	1474	bcgsc.ca	37	11	65779535	65779535	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	22	5	16	0	13	13	0	0	0
SYT12	91683	bcgsc.ca	37	11	66802216	66802216	+	Silent	SNP	G	G	T	rs78654575	byfrequency;alternate_allele	TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	84	7	141	0	1	1	0	0	0
CARNS1	57571	ucsc.edu	37	11	67186994	67186994	+	Silent	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	20	4	31	0	0	0	0	0	0
PITPNM1	9600	ucsc.edu	37	11	67269975	67269975	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	43	4	80	0	0	0	0	0	0
UNC93B1	81622	ucsc.edu	37	11	67765249	67765249	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	23	4	16	0	90	90	0	0	0
LRP5	4041	ucsc.edu	37	11	68178982	68178982	+	Silent	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	48	5	63	0	31	31	0	0	0
PPFIA1	8500	ucsc.edu	37	11	70200546	70200546	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	31	4	39	0	0	0	0	0	0
IL18BP	10068	ucsc.edu	37	11	71712326	71712326	+	Silent	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	35	4	47	0	13	13	0	0	0
LRRC32	2615	ucsc.edu;bcgsc.ca	37	11	76371042	76371042	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	99	10	113	0	13	13	0	0	0
MYO7A	4647	broad.mit.edu	37	11	76888670	76888670	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	11	3	30	0	2	1	1	0	0
INTS4	92105	ucsc.edu	37	11	77602473	77602473	+	Silent	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	36	4	26	0	13	13	0	0	0
GPR83	10888	ucsc.edu	37	11	94113822	94113822	+	Silent	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	37	4	40	0	0	0	0	0	0
KDM4D	55693	ucsc.edu;bcgsc.ca	37	11	94731906	94731906	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	77	8	92	0	1	1	0	0	0
DSCAML1	57453	ucsc.edu	37	11	117352857	117352857	+	Missense_Mutation	SNP	G	G	T	rs147554220	byfrequency;alternate_allele	TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	27	4	49	0	14	14	0	0	0
DSCAML1	57453	ucsc.edu	37	11	117392103	117392103	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	32	4	31	0	0	0	0	0	0
DSCAML1	57453	bcgsc.ca	37	11	117395657	117395657	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	27	5	40	0	4	4	0	0	0
DSCAML1	57453	ucsc.edu	37	11	117647571	117647571	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	39	6	60	0	8	8	0	0	0
MLL	4297	bcgsc.ca	37	11	118390355	118390355	+	Silent	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	165	9	182	0	24	24	0	0	0
CCDC84	338657	broad.mit.edu;ucsc.edu	37	11	118869166	118869166	+	Silent	SNP	C	C	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	22	5	30	0	7	2	5	0	0
SLC37A4	2542	ucsc.edu	37	11	118900023	118900023	+	Silent	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	38	4	42	0	157	157	0	0	0
HYOU1	10525	ucsc.edu	37	11	118919909	118919909	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	36	4	40	0	0	0	0	0	0
RNF26	79102	ucsc.edu	37	11	119206376	119206376	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	49	5	76	0	0	0	0	0	0
PVRL1	5818	ucsc.edu	37	11	119548418	119548418	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	46	5	60	0	13	13	0	0	0
FAM118B	79607	ucsc.edu	37	11	126120586	126120586	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	46	5	66	0	15	15	0	0	0
ZBTB44	29068	bcgsc.ca	37	11	130130906	130130906	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	266	10	300	0	29	29	0	0	0
B4GALNT3	283358	bcgsc.ca	37	12	663011	663011	+	Missense_Mutation	SNP	G	G	T	rs138791810	byfrequency;alternate_allele	TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	125	9	181	2	3	3	0	0	0
TULP3	7289	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	3048537	3048537	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	165	48	170	0	61	32	29	0	0
NOP2	4839	ucsc.edu	37	12	6675459	6675459	+	Silent	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	43	4	49	0	10	10	0	0	0
CD4	920	ucsc.edu	37	12	6925213	6925213	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	46	5	53	0	1	1	0	0	0
LEPREL2	10536	bcgsc.ca	37	12	6940394	6940394	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	153	11	227	0	2	2	0	0	0
SPSB2	84727	ucsc.edu	37	12	6981668	6981668	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	52	5	123	1	12	12	0	0	0
HEBP1	50865	hgsc.bcm.edu;bcgsc.ca	37	12	13142261	13142261	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	138	7	118	0	186	186	0	0	0
GRIN2B	2904	ucsc.edu	37	12	13715997	13715997	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	46	6	48	0	0	0	0	0	0
ABCC9	10060	bcgsc.ca	37	12	21970222	21970222	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	119	8	77	0	2	2	0	0	0
C2CD5	9847	bcgsc.ca	37	12	22676435	22676435	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	75	6	66	0	20	20	0	0	0
DENND5B	160518	ucsc.edu	37	12	31633109	31633109	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	17	4	13	0	6	6	0	0	0
TMEM117	84216	bcgsc.ca	37	12	44782069	44782069	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	209	11	77	0	7	7	0	0	0
RACGAP1P	83956	ucsc.edu	37	12	45457552	45457552	+	RNA	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	34	4	31	0	0	0	0	0	0
HDAC7	51564	ucsc.edu	37	12	48188547	48188547	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	39	5	59	0	0	0	0	0	0
OR10AD1	121275	ucsc.edu	37	12	48596618	48596618	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	39	4	41	0	0	0	0	0	0
MLL2	8085	ucsc.edu	37	12	49420469	49420469	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	39	4	72	0	28	28	0	0	0
MLL2	8085	ucsc.edu	37	12	49421809	49421809	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	39	4	72	0	34	34	0	0	0
MLL2	8085	ucsc.edu	37	12	49447311	49447311	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	15	4	18	0	2	2	0	0	0
FMNL3	91010	ucsc.edu	37	12	50048002	50048002	+	Silent	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	63	6	53	0	16	16	0	0	0
CELA1	1990	ucsc.edu	37	12	51735082	51735082	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	54	5	73	0	0	0	0	0	0
KRT79	338785	ucsc.edu	37	12	53215700	53215700	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	38	4	41	0	0	0	0	0	0
TENC1	23371	ucsc.edu;bcgsc.ca	37	12	53447791	53447791	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	77	9	108	0	0	0	0	0	0
TENC1	23371	ucsc.edu	37	12	53452373	53452373	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	42	4	83	0	6	6	0	0	0
RARG	5916	ucsc.edu	37	12	53605576	53605576	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	41	4	65	0	7	7	0	0	0
ESPL1	9700	ucsc.edu	37	12	53668740	53668740	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	41	4	34	0	0	0	0	0	0
ITGA7	3679	ucsc.edu	37	12	56088721	56088721	+	Silent	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	30	4	80	0	6	6	0	0	0
PAN2	9924	ucsc.edu	37	12	56720462	56720462	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	40	4	60	1	15	14	0	0	1
BAZ2A	11176	ucsc.edu	37	12	57007757	57007757	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	36	4	49	0	13	13	0	0	0
STAT6	6778	ucsc.edu	37	12	57499253	57499253	+	Silent	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	44	5	67	0	0	0	0	0	0
LRP1	4035	ucsc.edu	37	12	57590842	57590842	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	36	4	62	0	19	19	0	0	0
DCTN2	10540	ucsc.edu	37	12	57928929	57928929	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	34	4	43	0	0	0	0	0	0
C12orf66	144577	ucsc.edu	37	12	64609718	64609718	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	51	5	34	0	1	1	0	0	0
LEMD3	23592	ucsc.edu;bcgsc.ca	37	12	65564140	65564140	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	23	5	17	0	8	8	0	0	0
GRIP1	23426	ucsc.edu	37	12	66826335	66826335	+	Silent	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	56	6	16	0	0	0	0	0	0
CPM	1368	ucsc.edu	37	12	69264179	69264179	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	48	5	48	0	0	0	0	0	0
LGR5	8549	ucsc.edu	37	12	71955617	71955617	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	40	4	17	0	0	0	0	0	0
E2F7	144455	bcgsc.ca	37	12	77424026	77424026	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	178	9	157	1	0	0	0	0	0
EPYC	1833	ucsc.edu	37	12	91365657	91365657	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	36	4	17	0	0	0	0	0	0
SLC25A3	5250	ucsc.edu	37	12	98987785	98987785	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	52	5	83	0	360	359	1	0	0
ANKS1B	56899	ucsc.edu	37	12	99447079	99447079	+	Silent	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	24	4	11	0	0	0	0	0	0
UTP20	27340	ucsc.edu	37	12	101767244	101767244	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	61	6	70	0	1	1	0	0	0
CCDC53	51019	ucsc.edu	37	12	102455721	102455721	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	23	4	11	0	53	53	0	0	0
C12orf42	374470	ucsc.edu	37	12	103699961	103699961	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	38	4	32	0	0	0	0	0	0
PWP1	11137	bcgsc.ca	37	12	108098496	108098496	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	120	8	63	0	31	31	0	0	0
ACACB	32	ucsc.edu	37	12	109689911	109689911	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	36	4	40	0	22	22	0	0	0
RAD9B	144715	ucsc.edu	37	12	110940171	110940171	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	33	4	39	0	1	1	0	0	0
ACAD10	80724	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	112183962	112183962	+	Silent	SNP	T	T	C	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	101	34	132	0	27	8	19	0	0
OAS3	4940	ucsc.edu	37	12	113376355	113376355	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	41	4	52	0	5	5	0	0	0
OAS3	4940	ucsc.edu	37	12	113405850	113405850	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	45	6	74	0	20	20	0	0	0
FBXW8	26259	ucsc.edu	37	12	117461957	117461957	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	58	6	79	0	1	1	0	0	0
WSB2	55884	bcgsc.ca	37	12	118474292	118474292	+	Silent	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	109	8	126	0	78	78	0	0	0
TAOK3	51347	bcgsc.ca	37	12	118671524	118671524	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	122	8	114	0	13	13	0	0	0
COQ5	84274	bcgsc.ca	37	12	120947859	120947859	+	Silent	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	127	8	133	0	48	48	0	0	0
CABP1	9478	ucsc.edu	37	12	121104687	121104687	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	24	4	25	0	0	0	0	0	0
KNTC1	9735	ucsc.edu	37	12	123071263	123071263	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	33	4	19	0	4	4	0	0	0
OGFOD2	79676	ucsc.edu	37	12	123463680	123463680	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	34	4	48	0	23	23	0	0	0
SLC7A1	6541	ucsc.edu	37	13	30091329	30091329	+	Silent	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	29	4	32	0	4	4	0	0	0
SLC7A1	6541	ucsc.edu	37	13	30091362	30091362	+	Silent	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	29	4	25	0	4	4	0	0	0
SPG20	23111	ucsc.edu	37	13	36905714	36905714	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	53	5	53	0	32	32	0	0	0
MYCBP2	23077	bcgsc.ca	37	13	77750689	77750689	+	Silent	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	74	6	45	0	7	7	0	0	0
TPP2	7174	bcgsc.ca	37	13	103297280	103297280	+	Missense_Mutation	SNP	C	C	A	rs200612094	alternate_allele	TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	112	7	56	0	17	17	0	0	0
TPP2	7174	bcgsc.ca	37	13	103309416	103309416	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	149	12	69	0	5	5	0	0	0
CARS2	79587	bcgsc.ca	37	13	111298343	111298343	+	Missense_Mutation	SNP	C	C	A	rs113033050		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	121	8	189	1	101	101	0	0	0
MCF2L	23263	ucsc.edu	37	13	113743982	113743982	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	42	5	48	0	17	17	0	0	0
GAS6	2621	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	114523928	114523928	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	52	23	69	0	39	22	17	0	0
TEP1	7011	ucsc.edu	37	14	20851386	20851386	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	32	4	62	0	3	3	0	0	0
LRP10	26020	ucsc.edu	37	14	23345242	23345242	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	14	4	25	0	83	83	0	0	0
RBM23	55147	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	23374814	23374814	+	Splice_Site	SNP	C	C	G	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	40	26	99	0	2	0	2	0	0
CPNE6	9362	ucsc.edu	37	14	24546094	24546094	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	43	4	71	0	0	0	0	0	0
TGM1	7051	ucsc.edu	37	14	24724691	24724691	+	Missense_Mutation	SNP	C	C	A	rs2748529	alternate_allele	TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	33	4	84	0	0	0	0	0	0
ADCY4	196883	ucsc.edu	37	14	24798435	24798435	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	21	4	35	0	0	0	0	0	0
NFATC4	4776	ucsc.edu	37	14	24841785	24841785	+	Silent	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	22	4	73	0	0	0	0	0	0
NOVA1	4857	ucsc.edu	37	14	26949337	26949337	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	41	5	62	0	1	1	0	0	0
AKAP6	9472	ucsc.edu	37	14	33004826	33004826	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	52	6	99	0	0	0	0	0	0
AKAP6	9472	ucsc.edu	37	14	33291287	33291287	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	41	5	31	0	2	2	0	0	0
KIAA0391	9692	ucsc.edu	37	14	35592504	35592504	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	41	4	74	0	13	13	0	0	0
SLC25A21	89874	ucsc.edu	37	14	37203760	37203760	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	10	4	27	0	1	1	0	0	0
FSCB	84075	ucsc.edu	37	14	44974946	44974946	+	Silent	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	39	4	63	0	0	0	0	0	0
KIAA0586	9786	ucsc.edu	37	14	58965534	58965534	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	32	4	38	0	2	2	0	0	0
GPR135	64582	ucsc.edu	37	14	59930529	59930529	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	27	5	51	0	1	1	0	0	0
PLEKHG3	26030	bcgsc.ca	37	14	65208451	65208451	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	81	6	180	0	22	22	0	0	0
SPTB	6710	ucsc.edu	37	14	65271709	65271709	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	40	5	112	0	0	0	0	0	0
ACTN1	87	ucsc.edu	37	14	69358773	69358773	+	Silent	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	25	4	57	0	0	0	0	0	0
ADAM20	8748	ucsc.edu	37	14	70991341	70991341	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	39	4	33	0	0	0	0	0	0
MAP3K9	4293	ucsc.edu	37	14	71202742	71202742	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	51	5	79	0	0	0	0	0	0
PCNX	22990	ucsc.edu	37	14	71444561	71444561	+	Missense_Mutation	SNP	G	G	T	rs144559729		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	46	5	68	0	6	6	0	0	0
PSEN1	5663	ucsc.edu	37	14	73637561	73637561	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	25	4	58	0	36	36	0	0	0
LTBP2	4053	ucsc.edu	37	14	74995297	74995297	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	33	4	88	0	0	0	0	0	0
ADCK1	57143	bcgsc.ca	37	14	78285434	78285434	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	75	7	123	0	4	4	0	0	0
KCNK10	54207	ucsc.edu	37	14	88652364	88652364	+	Silent	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	29	4	76	0	0	0	0	0	0
PTPN21	11099	ucsc.edu	37	14	88946525	88946525	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	23	4	45	0	4	4	0	0	0
PSMC1	5700	ucsc.edu	37	14	90730384	90730384	+	Splice_Site	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	32	5	56	0	0	0	0	0	0
RPS6KA5	9252	ucsc.edu	37	14	91356933	91356933	+	Silent	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	44	4	60	0	2	2	0	0	0
UNC79	57578	ucsc.edu	37	14	94088937	94088937	+	Silent	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	32	4	83	0	5	5	0	0	0
FAM181A	90050	ucsc.edu	37	14	94395178	94395178	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	13	4	52	1	0	0	0	0	0
BDKRB1	623	ucsc.edu	37	14	96730714	96730714	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	43	4	75	0	0	0	0	0	0
SIVA1	10572	ucsc.edu	37	14	105222098	105222098	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	22	4	47	0	65	65	0	0	0
BRF1	2972	ucsc.edu	37	14	105686447	105686447	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	44	5	118	0	13	13	0	0	0
HERC2P2	400322	ucsc.edu	37	15	23283331	23283331	+	RNA	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	42	4	58	0	19	19	0	0	0
HERC2	8924	ucsc.edu	37	15	28422127	28422127	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	28	4	55	1	15	15	0	0	0
HERC2	8924	bcgsc.ca	37	15	28483301	28483301	+	Silent	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	104	9	165	0	10	10	0	0	0
TRPM1	4308	ucsc.edu	37	15	31342779	31342779	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	41	5	82	0	0	0	0	0	0
ACTC1	70	ucsc.edu	37	15	35084753	35084753	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	42	4	77	0	0	0	0	0	0
EIF2AK4	440275	bcgsc.ca	37	15	40289185	40289185	+	Silent	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	196	10	252	0	8	8	0	0	0
EIF2AK4	440275	ucsc.edu	37	15	40303485	40303485	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	34	4	32	0	0	0	0	0	0
DISP2	85455	bcgsc.ca	37	15	40657358	40657358	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	87	8	216	3	0	0	0	0	0
BAHD1	22893	ucsc.edu	37	15	40751093	40751093	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	41	4	118	0	9	9	0	0	0
RMDN3	55177	ucsc.edu	37	15	41044355	41044355	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	32	4	52	0	21	21	0	0	0
CHP1	11261	ucsc.edu	37	15	41535890	41535890	+	Silent	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	37	5	66	0	88	88	0	0	0
MGA	23269	ucsc.edu	37	15	41962068	41962068	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	29	4	45	0	1	1	0	0	0
UBR1	197131	ucsc.edu	37	15	43237665	43237665	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	29	4	48	0	1	1	0	0	0
UBR1	197131	ucsc.edu;bcgsc.ca	37	15	43324769	43324769	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	26	5	20	0	0	0	0	0	0
CCNDBP1	23582	ucsc.edu	37	15	43482288	43482288	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	32	4	52	0	30	30	0	0	0
EPB42	2038	ucsc.edu	37	15	43499634	43499634	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	38	4	78	0	0	0	0	0	0
TUBGCP4	27229	bcgsc.ca	37	15	43690305	43690305	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	166	9	255	0	2	2	0	0	0
MAP1A	4130	ucsc.edu	37	15	43819392	43819392	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	36	4	97	0	1	1	0	0	0
MYEF2	50804	ucsc.edu	37	15	48446066	48446066	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	35	4	20	0	11	11	0	0	0
DTWD1	56986	ucsc.edu	37	15	49935602	49935602	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	38	4	16	0	11	11	0	0	0
HDC	3067	ucsc.edu	37	15	50546762	50546762	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	34	4	74	0	0	0	0	0	0
USP50	373509	ucsc.edu	37	15	50836928	50836928	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	37	4	77	0	0	0	0	0	0
TRPM7	54822	ucsc.edu	37	15	50906461	50906461	+	Splice_Site	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	27	4	36	0	0	0	0	0	0
RNF111	54778	ucsc.edu	37	15	59376372	59376372	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	58	6	70	0	8	8	0	0	0
TLN2	83660	bcgsc.ca	37	15	63127949	63127949	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	108	8	223	2	22	22	0	0	0
CILP	8483	ucsc.edu	37	15	65490857	65490857	+	Silent	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	38	4	105	0	0	0	0	0	0
MEGF11	84465	ucsc.edu	37	15	66262915	66262915	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	28	4	41	0	2	2	0	0	0
DIS3L	115752	ucsc.edu	37	15	66618603	66618603	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	54	6	106	0	21	21	0	0	0
ZWILCH	55055	ucsc.edu	37	15	66807934	66807934	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	28	4	82	1	2	2	0	0	0
TLE3	7090	ucsc.edu	37	15	70347516	70347516	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	41	5	83	0	19	19	0	0	0
CT62	196993	ucsc.edu	37	15	71403518	71403518	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	12	4	18	0	0	0	0	0	0
THSD4	79875	ucsc.edu	37	15	71535151	71535151	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	39	4	96	1	0	0	0	0	0
CCDC33	80125	ucsc.edu	37	15	74628373	74628373	+	Silent	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	40	4	105	0	0	0	0	0	0
CYP11A1	1583	ucsc.edu	37	15	74632075	74632075	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	30	4	73	0	7	7	0	0	0
EFTUD1	79631	ucsc.edu	37	15	82520608	82520608	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	37	4	47	0	7	7	0	0	0
ALPK3	57538	ucsc.edu	37	15	85400766	85400766	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	40	4	97	0	12	12	0	0	0
TICRR	90381	ucsc.edu	37	15	90152089	90152089	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	40	6	54	0	1	1	0	0	0
UNC45A	55898	ucsc.edu	37	15	91482975	91482975	+	Silent	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	39	4	91	1	25	25	0	0	0
LINS	55180	ucsc.edu	37	15	101110032	101110032	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	38	4	66	0	8	8	0	0	0
RHBDF1	64285	bcgsc.ca	37	16	113682	113682	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	101	8	101	1	54	54	0	0	0
WDR24	84219	ucsc.edu	37	16	735521	735521	+	Silent	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	43	4	45	0	33	33	0	0	0
MSLN	10232	ucsc.edu	37	16	815568	815568	+	Missense_Mutation	SNP	G	G	T	rs148281244	byfrequency;alternate_allele	TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	35	4	57	0	7	7	0	0	0
CLCN7	1186	ucsc.edu	37	16	1501689	1501689	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	42	4	39	0	83	83	0	0	0
MAPK8IP3	23162	ucsc.edu;bcgsc.ca	37	16	1808148	1808148	+	Splice_Site	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	62	7	74	0	0	0	0	0	0
MAPK8IP3	23162	ucsc.edu	37	16	1815987	1815987	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	37	4	33	0	60	60	0	0	0
PKD1	5310	ucsc.edu	37	16	2143707	2143707	+	Silent	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	13	4	24	0	37	37	0	0	0
ABCA3	21	bcgsc.ca	37	16	2342157	2342157	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	113	8	101	0	61	60	0	1	0
CEMP1	752014	bcgsc.ca	37	16	2580540	2580540	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	96	7	112	0	20	20	0	0	0
ZG16B	124220	bcgsc.ca	37	16	2881994	2881994	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	109	9	117	0	0	0	0	0	0
ZSCAN10	84891	ucsc.edu	37	16	3142647	3142647	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	32	4	33	0	0	0	0	0	0
MEFV	4210	ucsc.edu	37	16	3299666	3299666	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	39	4	46	0	0	0	0	0	0
NLRC3	197358	ucsc.edu	37	16	3613718	3613718	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	27	4	27	0	3	3	0	0	0
CORO7	79585	ucsc.edu	37	16	4409377	4409377	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	33	4	39	0	2	2	0	0	0
TEKT5	146279	bcgsc.ca	37	16	10729630	10729630	+	Missense_Mutation	SNP	G	G	T	rs201346320	alternate_allele	TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	205	9	194	2	0	0	0	0	0
ABCC6	368	ucsc.edu	37	16	16244569	16244569	+	Silent	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	40	4	35	0	82	82	0	0	0
SMG1	23049	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	18840922	18840922	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	70	40	38	0	32	11	21	0	0
GGA2	23062	bcgsc.ca	37	16	23497377	23497377	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	159	8	162	0	71	71	0	0	0
KIAA0556	23247	bcgsc.ca	37	16	27777777	27777777	+	Silent	SNP	C	C	A	rs138259068	byfrequency;alternate_allele	TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	81	6	67	0	24	24	0	0	0
GSG1L	146395	ucsc.edu	37	16	27856291	27856291	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	33	4	30	0	0	0	0	0	0
SULT1A2	6799	bcgsc.ca	37	16	28603625	28603625	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	240	10	269	2	1	1	0	0	0
ASPHD1	253982	ucsc.edu	37	16	29913223	29913223	+	Silent	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	40	4	61	0	63	63	0	0	0
TAOK2	9344	ucsc.edu	37	16	29997180	29997180	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	34	4	33	0	0	0	0	0	0
ITGAL	3683	bcgsc.ca	37	16	30507456	30507456	+	Silent	SNP	C	C	A	rs149654067	alternate_allele	TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	164	9	186	1	16	16	0	0	0
ITGAL	3683	bcgsc.ca	37	16	30518144	30518144	+	Silent	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	228	11	283	1	13	13	0	0	0
PHKG2	5261	bcgsc.ca	37	16	30764839	30764839	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	89	6	99	0	77	77	0	0	0
RBL2	5934	bcgsc.ca	37	16	53504799	53504799	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	212	10	123	0	55	55	0	0	0
DOK4	55715	ucsc.edu	37	16	57509488	57509488	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	33	4	26	0	46	46	0	0	0
NOL3	8996	ucsc.edu;bcgsc.ca	37	16	67208826	67208826	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	46	5	47	0	69	69	0	0	0
TANGO6	79613	ucsc.edu	37	16	68953060	68953060	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	40	4	38	0	18	17	0	0	1
LOC100506083	0	bcgsc.ca	37	16	70367395	70367395	+	RNA	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	203	11	188	1	0	0	0	0	0
SF3B3	23450	bcgsc.ca	37	16	70566423	70566423	+	Silent	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	213	11	156	0	36	36	0	0	0
FTSJD1	55783	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	71317552	71317552	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	67	17	31	0	23	16	7	0	0
PHLPP2	23035	ucsc.edu	37	16	71748522	71748522	+	Silent	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	52	6	46	0	6	6	0	0	0
WDR59	79726	bcgsc.ca	37	16	74951873	74951873	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	214	11	200	0	37	37	0	0	0
KARS	3735	bcgsc.ca	37	16	75664348	75664348	+	Missense_Mutation	SNP	G	G	T	rs7186504		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	92	7	70	0	193	192	1	0	0
PLCG2	5336	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	81990321	81990321	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	77	28	67	0	6	6	0	0	0
OSGIN1	29948	ucsc.edu;bcgsc.ca	37	16	83992980	83992980	+	Silent	SNP	G	G	T	rs142057575	alternate_allele	TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	44	6	71	0	17	17	0	0	0
GSE1	23199	ucsc.edu	37	16	85689962	85689962	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	42	4	51	0	23	23	0	0	0
MAP1LC3B	81631	bcgsc.ca	37	16	87436683	87436683	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	270	11	223	0	416	416	0	0	0
BANP	54971	ucsc.edu	37	16	88066736	88066736	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	40	4	45	0	7	7	0	0	0
ZC3H18	124245	ucsc.edu	37	16	88643961	88643961	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	37	4	53	0	41	41	0	0	0
IL17C	27189	bcgsc.ca	37	16	88706444	88706444	+	Silent	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	152	9	175	0	0	0	0	0	0
ABR	29	ucsc.edu	37	17	973278	973278	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	36	4	58	0	24	24	0	0	0
SCARF1	8578	ucsc.edu	37	17	1538680	1538680	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	38	4	83	0	8	8	0	0	0
RTN4RL1	146760	ucsc.edu	37	17	1840887	1840887	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	31	4	59	0	21	21	0	0	0
TRPV1	7442	ucsc.edu	37	17	3477226	3477226	+	Missense_Mutation	SNP	C	C	A	rs201098725	alternate_allele	TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	26	4	27	0	4	4	0	0	0
ZNF594	84622	bcgsc.ca	37	17	5086567	5086567	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	204	10	190	0	5	5	0	0	0
DVL2	1856	ucsc.edu	37	17	7129607	7129607	+	Silent	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	43	5	87	0	8	8	0	0	0
TMEM95	339168	ucsc.edu	37	17	7259514	7259514	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	39	4	54	0	0	0	0	0	0
TRAPPC1	58485	ucsc.edu	37	17	7834833	7834833	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	45	4	92	1	0	0	0	0	0
ALOX12B	242	ucsc.edu	37	17	7977069	7977069	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	36	4	34	0	0	0	0	0	0
NTN1	9423	ucsc.edu	37	17	9066264	9066264	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	30	4	30	0	1	1	0	0	0
MPRIP	23164	ucsc.edu	37	17	17077315	17077315	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	47	4	63	0	55	55	0	0	0
RAI1	10743	bcgsc.ca	37	17	17707146	17707146	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	76	7	106	0	28	28	0	0	0
MYO15A	51168	ucsc.edu	37	17	18058520	18058520	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	35	4	46	0	0	0	0	0	0
FAM222B	55731	ucsc.edu	37	17	27085525	27085525	+	Silent	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	53	5	98	0	20	20	0	0	0
SEZ6	124925	ucsc.edu	37	17	27306707	27306707	+	Silent	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	40	4	63	0	0	0	0	0	0
TAOK1	57551	ucsc.edu	37	17	27869958	27869958	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	34	4	37	0	14	14	0	0	0
TP53I13	90313	ucsc.edu	37	17	27899046	27899046	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	43	4	64	0	51	51	0	0	0
GIT1	28964	ucsc.edu	37	17	27909734	27909734	+	Silent	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	42	4	47	0	46	46	0	0	0
CRLF3	51379	hgsc.bcm.edu;bcgsc.ca	37	17	29119514	29119514	+	Silent	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	189	11	205	0	16	16	0	0	0
RNF135	84282	bcgsc.ca	37	17	29325745	29325745	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	130	7	124	0	20	20	0	0	0
TMEM132E	124842	ucsc.edu	37	17	32964471	32964471	+	Missense_Mutation	SNP	G	G	T	rs146508723	byfrequency;alternate_allele	TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	47	5	78	0	0	0	0	0	0
SLC35G3	146861	ucsc.edu	37	17	33520323	33520323	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	43	5	78	0	0	0	0	0	0
ZNHIT3	9326	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	34849806	34849806	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	162	65	128	0	59	39	20	0	0
ACACA	31	bcgsc.ca	37	17	35564674	35564674	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	107	7	71	0	13	13	0	0	0
SYNRG	11276	ucsc.edu	37	17	35960427	35960427	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	48	5	29	0	2	2	0	0	0
GPR179	440435	ucsc.edu	37	17	36487230	36487230	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	27	4	24	0	0	0	0	0	0
CACNB1	782	ucsc.edu	37	17	37342801	37342801	+	Silent	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	34	4	36	0	4	4	0	0	0
KRT37	8688	ucsc.edu	37	17	39577139	39577139	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	36	5	38	0	0	0	0	0	0
PSMC3IP	29893	ucsc.edu	37	17	40726166	40726166	+	Silent	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	47	5	65	0	14	14	0	0	0
TUBG1	7283	bcgsc.ca	37	17	40766977	40766977	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	144	9	173	0	64	64	0	0	0
RPL27	6155	ucsc.edu	37	17	41152114	41152114	+	Silent	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	37	4	41	1	0	0	0	0	0
IFI35	3430	ucsc.edu	37	17	41165351	41165351	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	49	5	77	1	56	56	0	0	0
GRN	2896	ucsc.edu	37	17	42427069	42427069	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	44	6	64	0	555	555	0	0	0
CCDC43	124808	ucsc.edu	37	17	42766921	42766921	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	38	4	57	0	0	0	0	0	0
SPPL2C	162540	bcgsc.ca	37	17	43923627	43923627	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	110	9	151	0	0	0	0	0	0
RPRML	388394	bcgsc.ca	37	17	45056186	45056186	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	23	7	24	0	0	0	0	0	0
SCRN2	90507	ucsc.edu	37	17	45917593	45917593	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	75	7	108	0	66	66	0	0	0
UBE2Z	65264	ucsc.edu	37	17	47004480	47004480	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	34	4	57	0	62	62	0	0	0
KAT7	11143	bcgsc.ca	37	17	47900579	47900579	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	102	8	83	0	9	9	0	0	0
DLX3	1747	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	48072053	48072053	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	51	25	69	0	0	0	0	0	0
COL1A1	1277	ucsc.edu	37	17	48273518	48273518	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	40	4	61	0	0	0	0	0	0
XYLT2	64132	ucsc.edu	37	17	48437593	48437593	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	33	4	43	0	40	40	0	0	0
LRRC59	55379	bcgsc.ca	37	17	48465453	48465453	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	212	9	210	2	95	95	0	0	0
CACNA1G	8913	ucsc.edu	37	17	48646301	48646301	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	47	5	57	0	0	0	0	0	0
CACNA1G	8913	ucsc.edu	37	17	48703696	48703696	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	28	4	53	0	0	0	0	0	0
ABCC3	8714	ucsc.edu	37	17	48761464	48761464	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	42	4	42	0	0	0	0	0	0
SPAG9	9043	bcgsc.ca	37	17	49067869	49067869	+	Silent	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	73	6	91	0	83	83	0	0	0
EPX	8288	ucsc.edu	37	17	56272358	56272358	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	39	4	53	0	0	0	0	0	0
DDX42	11325	bcgsc.ca	37	17	61890688	61890688	+	Silent	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	78	6	110	0	35	35	0	0	0
RGS9	8787	ucsc.edu	37	17	63156457	63156457	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	63	6	68	0	0	0	0	0	0
CD300A	11314	ucsc.edu	37	17	72473633	72473633	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	43	4	70	0	13	13	0	0	0
KIAA0195	9772	ucsc.edu	37	17	73482023	73482023	+	Silent	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	27	4	26	0	17	17	0	0	0
CASKIN2	57513	ucsc.edu	37	17	73501038	73501038	+	Silent	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	27	5	54	0	22	22	0	0	0
CASKIN2	57513	ucsc.edu	37	17	73501935	73501935	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	58	6	88	1	17	17	0	0	0
RECQL5	9400	ucsc.edu	37	17	73625187	73625187	+	Silent	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	36	5	60	0	20	20	0	0	0
SAP30BP	29115	bcgsc.ca	37	17	73695914	73695914	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	216	11	245	1	36	36	0	0	0
FBF1	85302	bcgsc.ca	37	17	73915917	73915917	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	91	7	123	0	12	12	0	0	0
ST6GALNAC1	55808	ucsc.edu;bcgsc.ca	37	17	74625222	74625222	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	66	7	107	1	0	0	0	0	0
TMC6	11322	ucsc.edu	37	17	76122871	76122871	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	27	4	26	0	0	0	0	0	0
DNAH17	8632	ucsc.edu	37	17	76451911	76451911	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	34	4	49	0	0	0	0	0	0
ENGASE	64772	ucsc.edu	37	17	77079579	77079579	+	Silent	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	40	4	43	0	13	13	0	0	0
BAIAP2	10458	bcgsc.ca	37	17	79027490	79027490	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	152	9	210	0	29	29	0	0	0
BAIAP2	10458	ucsc.edu;bcgsc.ca	37	17	79080555	79080555	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	72	7	100	1	0	0	0	0	0
TBCD	6904	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	80885835	80885835	+	Silent	SNP	G	G	C	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	97	33	108	0	79	48	31	0	0
SMCHD1	23347	ucsc.edu	37	18	2763787	2763787	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	50	5	28	0	0	0	0	0	0
MYOM1	8736	ucsc.edu	37	18	3067511	3067511	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	74	7	57	0	2	2	0	0	0
TGIF1	7050	bcgsc.ca	37	18	3457731	3457731	+	Silent	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	100	7	112	0	248	247	0	1	0
NPC1	4864	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	21128030	21128030	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	184	72	207	0	9	2	7	0	0
LAMA3	3909	ucsc.edu	37	18	21395184	21395184	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	42	4	38	0	4	4	0	0	0
DSC3	1825	ucsc.edu;bcgsc.ca	37	18	28576762	28576762	+	Missense_Mutation	SNP	C	C	A	rs142851621	byfrequency;alternate_allele	TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	74	7	40	0	0	0	0	0	0
RNF165	494470	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	18	44013351	44013353	+	In_Frame_Del	DEL	CCC	CCC	-	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	CCC	CCC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	49	15	51	0	0	0	0	0	0
RNF165	494470	hgsc.bcm.edu;bcgsc.ca	37	18	44013357	44013357	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	58	16	58	0	0	0	0	0	0
CXXC1	30827	bcgsc.ca	37	18	47812935	47812935	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	171	10	232	0	45	45	0	0	0
RAB27B	5874	bcgsc.ca	37	18	52546674	52546674	+	Silent	SNP	G	G	T	rs3764511	alternate_allele	TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	161	10	101	1	0	0	0	0	0
ONECUT2	9480	bcgsc.ca	37	18	55143872	55143872	+	Silent	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	78	6	68	0	0	0	0	0	0
ALPK2	115701	bcgsc.ca	37	18	56247676	56247676	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	185	11	202	1	0	0	0	0	0
CNDP1	84735	ucsc.edu	37	18	72247448	72247448	+	Missense_Mutation	SNP	C	C	A	rs144587048	alternate_allele	TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	53	5	48	0	1	1	0	0	0
GRIN3B	116444	hgsc.bcm.edu	37	19	1005500	1005500	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	37	2	57	0	62	62	0	0	0
ABCA7	10347	ucsc.edu	37	19	1056107	1056107	+	Silent	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	37	4	85	0	25	25	0	0	0
ABCA7	10347	hgsc.bcm.edu;bcgsc.ca	37	19	1062293	1062293	+	Missense_Mutation	SNP	C	C	A	rs144378856	alternate_allele	TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	128	8	244	0	15	15	0	0	0
GPX4	2879	ucsc.edu;bcgsc.ca	37	19	1106396	1106396	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	52	7	116	0	106	7	99	0	0
APC2	10297	bcgsc.ca	37	19	1462038	1462038	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	67	6	95	0	0	0	0	0	0
TLE2	7089	ucsc.edu	37	19	3009545	3009545	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	26	4	53	0	0	0	0	0	0
MFSD12	126321	bcgsc.ca	37	19	3544868	3544868	+	Silent	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	17	5	31	0	46	46	0	0	0
PIP5K1C	23396	bcgsc.ca	37	19	3653479	3653479	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	77	7	79	0	35	35	0	0	0
DAPK3	1613	ucsc.edu	37	19	3964284	3964284	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	36	4	48	0	41	41	0	0	0
EBI3	10148	ucsc.edu	37	19	4229584	4229584	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	26	4	15	0	17	17	0	0	0
SH3GL1	6455	bcgsc.ca	37	19	4366961	4366961	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	336	15	413	2	39	39	0	0	0
KDM4B	23030	ucsc.edu	37	19	5082416	5082416	+	Silent	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	41	4	49	0	36	36	0	0	0
LONP1	9361	ucsc.edu	37	19	5707113	5707113	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	27	4	45	0	77	77	0	0	0
C3	718	ucsc.edu	37	19	6713306	6713306	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	29	4	34	0	465	465	0	0	0
TRIP10	9322	bcgsc.ca	37	19	6743533	6743533	+	Missense_Mutation	SNP	G	G	T	rs149097976	alternate_allele	TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	67	6	111	0	96	96	0	0	0
PEX11G	92960	ucsc.edu	37	19	7550853	7550853	+	Silent	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	34	4	58	1	15	15	0	0	0
KANK3	256949	ucsc.edu	37	19	8389642	8389642	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	49	5	69	0	21	21	0	0	0
MUC16	94025	ucsc.edu;bcgsc.ca	37	19	8995977	8995977	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	83	8	113	0	0	0	0	0	0
MUC16	94025	ucsc.edu	37	19	9084575	9084575	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	39	5	35	0	0	0	0	0	0
DNMT1	1786	ucsc.edu	37	19	10252737	10252737	+	Silent	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	28	4	45	0	26	26	0	0	0
DNMT1	1786	ucsc.edu	37	19	10291562	10291562	+	Splice_Site	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	41	4	52	0	0	0	0	0	0
LDLR	3949	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	11216253	11216253	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	66	28	74	0	0	0	0	0	0
TSPAN16	26526	ucsc.edu	37	19	11422863	11422863	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	26	4	38	0	0	0	0	0	0
ACP5	54	ucsc.edu	37	19	11685843	11685843	+	Silent	SNP	C	C	A	rs147954991	alternate_allele	TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	54	5	64	0	20	20	0	0	0
ZNF878	729747	ucsc.edu	37	19	12155975	12155975	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	28	4	28	0	0	0	0	0	0
ZNF625	90589	ucsc.edu;bcgsc.ca	37	19	12258600	12258600	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	85	8	91	0	7	7	0	0	0
ZNF563	147837	bcgsc.ca	37	19	12430212	12430212	+	Silent	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	161	9	174	0	1	1	0	0	0
STX10	8677	ucsc.edu	37	19	13255375	13255375	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	36	4	49	0	5	5	0	0	0
DCAF15	90379	ucsc.edu	37	19	14065197	14065197	+	Silent	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	50	5	48	0	14	14	0	0	0
SLC1A6	6511	ucsc.edu	37	19	15079286	15079286	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	25	4	37	0	20	20	0	0	0
EPHX3	79852	ucsc.edu	37	19	15341868	15341868	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	39	4	69	0	0	0	0	0	0
AKAP8	10270	ucsc.edu	37	19	15482783	15482783	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	58	6	79	0	40	40	0	0	0
AP1M1	8907	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	16339616	16339616	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	56	19	78	0	135	76	59	0	0
CPAMD8	27151	ucsc.edu	37	19	17122568	17122568	+	Splice_Site	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	41	4	47	0	0	0	0	0	0
ABHD8	79575	ucsc.edu	37	19	17405584	17405584	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	40	4	56	0	35	35	0	0	0
UNC13A	23025	bcgsc.ca	37	19	17763482	17763482	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	302	10	406	0	0	0	0	0	0
ARRDC2	27106	bcgsc.ca	37	19	18119549	18119549	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	115	8	165	0	48	48	0	0	0
SSBP4	170463	ucsc.edu	37	19	18542852	18542852	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	34	4	62	0	47	47	0	0	0
ELL	8178	bcgsc.ca	37	19	18632819	18632819	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	52	6	79	0	14	14	0	0	0
KLHL26	55295	ucsc.edu	37	19	18779686	18779686	+	Silent	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	44	5	81	0	6	6	0	0	0
ZNF493	284443	ucsc.edu	37	19	21607153	21607153	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	45	5	14	0	77	46	0	31	0
ZNF99	7652	broad.mit.edu	37	19	22941129	22941129	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	77	3	48	1	0	0	0	0	0
ZNF99	7652	hgsc.bcm.edu;broad.mit.edu	37	19	22941154	22941154	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	63	4	44	1	0	0	0	0	0
ETV2	2116	ucsc.edu	37	19	36133379	36133379	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	39	4	59	0	0	0	0	0	0
KIRREL2	84063	ucsc.edu	37	19	36348051	36348051	+	Silent	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	30	4	81	0	0	0	0	0	0
SYNE4	163183	ucsc.edu	37	19	36494529	36494529	+	Silent	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	39	4	38	0	16	16	0	0	0
SIPA1L3	23094	ucsc.edu	37	19	38591694	38591694	+	Silent	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	26	4	45	0	0	0	0	0	0
PSMD8	5714	ucsc.edu	37	19	38869893	38869893	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	27	4	53	0	0	0	0	0	0
GGN	199720	ucsc.edu	37	19	38876999	38876999	+	Silent	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	35	5	30	0	1	1	0	0	0
RASGRP4	115727	ucsc.edu	37	19	38901762	38901762	+	Silent	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	36	4	81	0	0	0	0	0	0
RYR1	6261	ucsc.edu	37	19	38996000	38996000	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	34	4	50	0	1	1	0	0	0
SAMD4B	55095	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	39868382	39868391	+	Frame_Shift_Del	DEL	TCCCACTGAT	TCCCACTGAT	-	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	TCCCACTGAT	TCCCACTGAT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	61	10	110	0	0	0	0	0	0
FCGBP	8857	hgsc.bcm.edu;bcgsc.ca	37	19	40362919	40362919	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	82	8	148	0	2	2	0	0	0
CYP2B7P1	1556	ucsc.edu	37	19	41442314	41442314	+	RNA	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	30	4	45	0	0	0	0	0	0
MEGF8	1954	ucsc.edu	37	19	42840381	42840381	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	53	5	64	0	20	20	0	0	0
ZNF283	284349	bcgsc.ca	37	19	44351959	44351959	+	Silent	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	161	10	104	1	4	4	0	0	0
ZNF225	7768	bcgsc.ca	37	19	44636132	44636132	+	Silent	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	104	9	103	0	8	8	0	0	0
ERCC2	2068	bcgsc.ca	37	19	45872372	45872372	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	122	8	157	0	15	15	0	0	0
SYMPK	8189	ucsc.edu	37	19	46328569	46328569	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	50	5	67	0	56	56	0	0	0
IRF2BP1	26145	ucsc.edu	37	19	46388582	46388582	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	23	4	36	0	15	15	0	0	0
NOVA2	4858	broad.mit.edu;bcgsc.ca	37	19	46443735	46443735	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	24	4	21	0	0	0	0	0	0
KCNJ14	3770	ucsc.edu	37	19	48967488	48967488	+	Silent	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	41	4	55	0	3	3	0	0	0
CA11	770	ucsc.edu	37	19	49142273	49142273	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	38	4	63	0	26	26	0	0	0
MAMSTR	284358	ucsc.edu	37	19	49216528	49216528	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	50	5	61	0	2	2	0	0	0
RASIP1	54922	ucsc.edu	37	19	49243527	49243527	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	37	4	61	0	1	1	0	0	0
PPP1R15A	23645	ucsc.edu	37	19	49376560	49376560	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	25	4	56	0	22	22	0	0	0
MYBPC2	4606	ucsc.edu	37	19	50967721	50967721	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	30	4	35	0	0	0	0	0	0
LRRC4B	94030	ucsc.edu	37	19	51021838	51021838	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	34	5	60	0	1	1	0	0	0
KLK15	55554	ucsc.edu	37	19	51330150	51330150	+	Silent	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	42	4	57	0	0	0	0	0	0
KLK6	5653	bcgsc.ca	37	19	51465050	51465050	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	112	9	110	0	0	0	0	0	0
EPS8L1	54869	ucsc.edu	37	19	55591186	55591186	+	Silent	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	32	4	36	0	23	23	0	0	0
SBK2	646643	ucsc.edu	37	19	56047433	56047433	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	31	5	57	0	0	0	0	0	0
NLRP4	147945	bcgsc.ca	37	19	56369571	56369571	+	Missense_Mutation	SNP	C	C	A	rs147621156	alternate_allele	TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	73	6	112	1	0	0	0	0	0
ZIK1	284307	bcgsc.ca	37	19	58101535	58101535	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	116	8	115	0	2	2	0	0	0
ZNF324	25799	ucsc.edu	37	19	58980672	58980672	+	Silent	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	44	5	60	1	0	0	0	0	0
ZNF446	55663	ucsc.edu	37	19	58989075	58989075	+	Silent	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	42	4	59	0	3	3	0	0	0
TRIM28	10155	ucsc.edu	37	19	59061400	59061400	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	30	4	60	0	3	3	0	0	0
KIDINS220	57498	ucsc.edu	37	2	8873750	8873750	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	37	4	60	0	33	33	0	0	0
KLF11	8462	ucsc.edu	37	2	10192598	10192598	+	Silent	SNP	G	G	T	rs36091043	bycluster;byfrequency;alternate_allele	TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	39	4	32	0	44	44	0	0	0
KCNF1	3754	ucsc.edu	37	2	11053069	11053069	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	35	4	43	0	1	1	0	0	0
ATAD2B	54454	ucsc.edu;bcgsc.ca	37	2	24087743	24087743	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	30	6	16	0	3	3	0	0	0
OTOF	9381	ucsc.edu	37	2	26687877	26687877	+	Missense_Mutation	SNP	C	C	A	rs141800430	alternate_allele	TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	42	4	70	0	0	0	0	0	0
OTOF	9381	ucsc.edu;bcgsc.ca	37	2	26707380	26707380	+	Silent	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	39	6	53	0	0	0	0	0	0
SLC5A6	8884	ucsc.edu	37	2	27423309	27423309	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	31	4	45	0	16	16	0	0	0
FAM179A	165186	ucsc.edu	37	2	29247177	29247177	+	Missense_Mutation	SNP	G	G	T	rs200564513	alternate_allele	TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	20	4	21	0	0	0	0	0	0
C2orf71	388939	ucsc.edu	37	2	29294393	29294393	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	42	4	59	1	0	0	0	0	0
CAPN13	92291	ucsc.edu	37	2	30985978	30985978	+	Silent	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	31	4	39	0	0	0	0	0	0
BIRC6	57448	ucsc.edu;bcgsc.ca	37	2	32613843	32613843	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	73	7	63	0	6	6	0	0	0
HEATR5B	54497	ucsc.edu	37	2	37296047	37296047	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	45	4	38	0	5	5	0	0	0
GEMIN6	79833	bcgsc.ca	37	2	39009029	39009029	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	141	9	114	0	24	24	0	0	0
EHBP1	23301	bcgsc.ca	37	2	63215108	63215108	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	159	9	95	0	2	2	0	0	0
MEIS1	4211	ucsc.edu	37	2	66691296	66691296	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	22	4	14	0	4	4	0	0	0
APLF	200558	bcgsc.ca	37	2	68753242	68753242	+	Silent	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	102	9	52	0	2	2	0	0	0
PAIP2B	400961	ucsc.edu	37	2	71417143	71417143	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	28	5	27	0	1	1	0	0	0
ZNF638	27332	bcgsc.ca	37	2	71645731	71645731	+	Splice_Site	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	149	9	106	0	0	0	0	0	0
TET3	200424	ucsc.edu	37	2	74274685	74274685	+	Silent	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	41	4	52	0	2	2	0	0	0
STARD7	56910	ucsc.edu;bcgsc.ca	37	2	96852636	96852636	+	Silent	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	75	7	78	0	90	90	0	0	0
KANSL3	55683	ucsc.edu	37	2	97261351	97261351	+	Silent	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	34	4	44	0	44	44	0	0	0
TMEM131	23505	ucsc.edu	37	2	98373703	98373703	+	Silent	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	44	4	88	0	39	39	0	0	0
INPP4A	3631	ucsc.edu	37	2	99198193	99198193	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	27	4	37	0	3	3	0	0	0
TBC1D8	11138	hgsc.bcm.edu	37	2	101706726	101706726	+	Silent	SNP	G	G	C	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	44	3	64	0	1	1	0	0	0
IL1RL2	8808	ucsc.edu	37	2	102805728	102805728	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	39	5	44	0	3	3	0	0	0
IL1RL2	8808	bcgsc.ca	37	2	102851497	102851497	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	68	6	72	0	1	1	0	0	0
SLC9A2	6549	ucsc.edu	37	2	103299928	103299928	+	Silent	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	44	5	25	0	0	0	0	0	0
SLC9A2	6549	ucsc.edu	37	2	103299936	103299936	+	Silent	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	39	4	21	0	0	0	0	0	0
SEPT10	151011	bcgsc.ca	37	2	110343299	110343299	+	Silent	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	113	10	101	1	0	0	0	0	0
PSD4	23550	ucsc.edu	37	2	113940599	113940599	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	41	5	62	0	17	17	0	0	0
TMEM37	140738	bcgsc.ca	37	2	120194864	120194864	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	298	11	332	1	46	46	0	0	0
CNTNAP5	129684	ucsc.edu	37	2	125555723	125555723	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	39	4	27	0	0	0	0	0	0
ZRANB3	84083	ucsc.edu	37	2	136072978	136072978	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	30	4	27	0	1	1	0	0	0
UBXN4	23190	ucsc.edu	37	2	136511115	136511115	+	Silent	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	38	4	24	0	1	1	0	0	0
LYPD6B	130576	bcgsc.ca	37	2	150064840	150064840	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	113	9	74	0	0	0	0	0	0
NR4A2	4929	ucsc.edu	37	2	157182825	157182825	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	63	6	93	1	3	3	0	0	0
PKP4	8502	ucsc.edu	37	2	159526396	159526396	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	28	4	36	0	224	224	0	0	0
DPP4	1803	ucsc.edu	37	2	162862281	162862281	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	44	6	30	0	132	132	0	0	0
KCNH7	90134	bcgsc.ca	37	2	163279921	163279921	+	Silent	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	237	11	99	0	0	0	0	0	0
SLC38A11	151258	ucsc.edu;bcgsc.ca	37	2	165765170	165765170	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	87	9	37	0	24	24	0	0	0
SCN1A	6323	bcgsc.ca	37	2	166901560	166901560	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	84	7	53	0	0	0	0	0	0
SPC25	57405	ucsc.edu	37	2	169746021	169746021	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	20	4	21	0	1	1	0	0	0
LRP2	4036	bcgsc.ca	37	2	170062534	170062534	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	163	10	76	0	0	0	0	0	0
LRP2	4036	bcgsc.ca	37	2	170150721	170150721	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	182	10	134	1	45	45	0	0	0
SSB	6741	bcgsc.ca	37	2	170667718	170667718	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	80	7	72	0	115	115	0	0	0
UBR3	130507	ucsc.edu;bcgsc.ca	37	2	170937153	170937153	+	Silent	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	90	9	53	0	11	11	0	0	0
GORASP2	26003	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	171806790	171806790	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	76	32	29	0	0	0	0	0	0
TTN	7273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	179411556	179411556	+	Silent	SNP	A	A	G	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	44	22	17	0	0	0	0	0	0
COL5A2	1290	ucsc.edu	37	2	189901530	189901530	+	Splice_Site	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	24	4	14	0	0	0	0	0	0
SF3B1	23451	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	2	198269882	198269882	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	42	4	29	0	108	108	0	0	0
SATB2	23314	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	200193570	200193570	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	46	11	16	0	16	8	8	0	0
KCTD18	130535	ucsc.edu	37	2	201354861	201354861	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	42	4	48	0	25	25	0	0	0
NOP58	51602	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	203155146	203155146	+	Silent	SNP	T	T	C	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	76	31	58	0	24	10	14	0	0
ABCA12	26154	bcgsc.ca	37	2	215876849	215876849	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	139	8	98	0	0	0	0	0	0
TNS1	7145	ucsc.edu	37	2	218672824	218672824	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	41	4	78	0	2	2	0	0	0
BCS1L	617	ucsc.edu	37	2	219526662	219526662	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	33	4	48	0	17	17	0	0	0
CYP27A1	1593	bcgsc.ca	37	2	219677361	219677361	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	314	14	507	1	57	57	0	0	0
IHH	3549	ucsc.edu	37	2	219922212	219922212	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	25	4	23	0	15	15	0	0	0
CNPPD1	27013	bcgsc.ca	37	2	220041538	220041538	+	Missense_Mutation	SNP	C	C	A	rs150342479	alternate_allele	TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	7	4	21	0	214	214	0	0	0
ANKZF1	55139	bcgsc.ca	37	2	220100015	220100015	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	109	9	144	1	20	20	0	0	0
SPEG	10290	ucsc.edu	37	2	220347560	220347560	+	Silent	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	52	5	69	0	0	0	0	0	0
OBSL1	23363	ucsc.edu	37	2	220431721	220431721	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	28	4	55	0	50	50	0	0	0
COL4A4	1286	bcgsc.ca	37	2	227924906	227924906	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	156	9	172	0	14	14	0	0	0
COL4A3	1285	ucsc.edu	37	2	228153944	228153944	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	41	4	36	0	14	14	0	0	0
SPHKAP	80309	bcgsc.ca	37	2	228846519	228846519	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	79	7	42	0	0	0	0	0	0
SP110	3431	ucsc.edu	37	2	231042903	231042903	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	42	4	31	0	11	11	0	0	0
PDE6D	5147	bcgsc.ca	37	2	232603881	232603881	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	106	9	115	0	27	27	0	0	0
GIGYF2	26058	ucsc.edu	37	2	233680401	233680401	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	52	6	69	0	31	31	0	0	0
ATG16L1	55054	ucsc.edu	37	2	234183322	234183322	+	Silent	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	39	4	46	0	1	1	0	0	0
UGT1A1	54658	ucsc.edu	37	2	234668942	234668942	+	Silent	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	40	4	41	0	0	0	0	0	0
SCLY	51540	ucsc.edu	37	2	239005502	239005502	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	24	4	33	0	32	32	0	0	0
HDAC4	9759	ucsc.edu;bcgsc.ca	37	2	240024568	240024568	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	58	7	104	0	3	3	0	0	0
ANKMY1	51281	ucsc.edu	37	2	241459909	241459909	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	23	4	66	0	4	4	0	0	0
KIF1A	547	ucsc.edu	37	2	241723216	241723216	+	Silent	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	11	4	17	0	0	0	0	0	0
C2orf54	79919	ucsc.edu;bcgsc.ca	37	2	241835039	241835039	+	Nonsense_Mutation	SNP	C	C	A	rs200160556	alternate_allele	TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	31	5	60	0	0	0	0	0	0
ATG4B	23192	ucsc.edu	37	2	242606060	242606060	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	37	4	32	0	0	0	0	0	0
NSFL1C	55968	bcgsc.ca	37	20	1435749	1435749	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	319	14	261	0	147	147	0	0	0
UBOX5	22888	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	3102965	3102965	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	73	23	116	0	8	6	2	0	0
SIGLEC1	6614	ucsc.edu	37	20	3677422	3677422	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	50	5	97	0	0	0	0	0	0
SMOX	54498	bcgsc.ca	37	20	4162833	4162833	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	55	7	98	1	16	16	0	0	0
LRRN4	164312	bcgsc.ca	37	20	6022369	6022369	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	150	9	230	0	383	382	1	0	0
MKKS	8195	ucsc.edu	37	20	10388347	10388347	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	37	4	49	0	39	39	0	0	0
SLC24A3	57419	bcgsc.ca	37	20	19654247	19654247	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	111	8	91	1	0	0	0	0	0
ACSS1	84532	ucsc.edu	37	20	24994298	24994298	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	39	4	39	0	0	0	0	0	0
NINL	22981	ucsc.edu	37	20	25457463	25457463	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	43	5	49	0	18	18	0	0	0
TM9SF4	9777	ucsc.edu	37	20	30737563	30737563	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	31	4	63	0	0	0	0	0	0
PLAGL2	5326	hgsc.bcm.edu	37	20	30784822	30784822	+	Silent	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	146	8	177	1	8	8	0	0	0
POFUT1	23509	ucsc.edu	37	20	30816123	30816123	+	Silent	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	37	4	88	1	15	15	0	0	0
NFATC2	4773	ucsc.edu	37	20	50049132	50049132	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	35	4	57	0	2	2	0	0	0
BCAS1	8537	bcgsc.ca	37	20	52645037	52645037	+	Missense_Mutation	SNP	T	T	C	rs143209009		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	231	6	239	0	0	0	0	0	0
C20orf85	128602	ucsc.edu	37	20	56735750	56735750	+	Missense_Mutation	SNP	C	C	A	rs201437061	alternate_allele	TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	41	5	61	0	0	0	0	0	0
TAF4	6874	hgsc.bcm.edu	37	20	60585136	60585136	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	49	3	82	0	12	11	0	1	0
SS18L1	26039	ucsc.edu	37	20	60733743	60733743	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	35	4	57	1	9	9	0	0	0
LAMA5	3911	ucsc.edu	37	20	60891752	60891752	+	Silent	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	30	4	23	0	27	27	0	0	0
TCEA2	6919	ucsc.edu	37	20	62699429	62699429	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	34	4	54	0	48	48	0	0	0
ANKRD30BP2	149992	broad.mit.edu	37	21	14414844	14414844	+	RNA	SNP	T	T	C	rs71203526		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	94	6	73	0	0	0	0	0	0
MRPL39	54148	ucsc.edu	37	21	26979762	26979762	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	42	4	69	0	56	56	0	0	0
CRYZL1	9946	bcgsc.ca	37	21	34975795	34975795	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	138	8	129	0	15	15	0	0	0
SETD4	54093	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	21	37418117	37418117	+	Silent	SNP	T	T	C	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	204	90	200	0	24	14	10	0	0
BACE2	25825	bcgsc.ca	37	21	42613801	42613801	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	162	9	236	0	102	102	0	0	0
C2CD2	25966	ucsc.edu	37	21	43309333	43309333	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	42	4	73	0	9	9	0	0	0
SIK1	150094	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	21	44841223	44841223	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	119	46	168	0	4	4	0	0	0
TRAPPC10	7109	ucsc.edu	37	21	45523372	45523372	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	31	4	48	0	50	50	0	0	0
TRPM2	7226	ucsc.edu	37	21	45789086	45789086	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	20	4	14	0	2	2	0	0	0
LSS	4047	ucsc.edu	37	21	47614576	47614576	+	Splice_Site	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	35	4	38	0	0	0	0	0	0
DIP2A	23181	ucsc.edu	37	21	47977654	47977654	+	Silent	SNP	G	G	T	rs113139129		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	30	4	55	0	0	0	0	0	0
GAB4	128954	ucsc.edu	37	22	17468976	17468976	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	50	5	49	0	0	0	0	0	0
CDC45	8318	ucsc.edu	37	22	19481893	19481893	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	42	4	66	0	0	0	0	0	0
KLHL22	84861	ucsc.edu;bcgsc.ca	37	22	20825698	20825698	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	90	11	124	0	15	15	0	0	0
BCR	613	ucsc.edu	37	22	23627322	23627322	+	Silent	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	34	5	31	0	32	32	0	0	0
ADRBK2	157	ucsc.edu	37	22	26040630	26040630	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	26	4	20	0	0	0	0	0	0
ADRBK2	157	bcgsc.ca	37	22	26114261	26114261	+	Silent	SNP	G	G	T	rs151190692	alternate_allele	TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	182	10	160	1	4	4	0	0	0
LIF	3976	bcgsc.ca	37	22	30639980	30639980	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	78	7	91	0	2	2	0	0	0
SMTN	6525	ucsc.edu	37	22	31485822	31485822	+	Silent	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	44	4	68	0	13	13	0	0	0
PATZ1	23598	ucsc.edu	37	22	31740897	31740897	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	40	5	72	0	25	25	0	0	0
SFI1	9814	ucsc.edu	37	22	32009747	32009747	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	26	4	25	0	34	34	0	0	0
DEPDC5	9681	bcgsc.ca	37	22	32198758	32198758	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	142	8	190	0	2	2	0	0	0
HMGXB4	10042	bcgsc.ca	37	22	35660935	35660935	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	168	8	162	2	1	1	0	0	0
PLA2G6	8398	ucsc.edu	37	22	38565386	38565386	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	36	4	56	0	8	8	0	0	0
TNRC6B	23112	ucsc.edu	37	22	40662922	40662922	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	42	4	53	0	1	1	0	0	0
NAGA	4668	bcgsc.ca	37	22	42463911	42463911	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	216	10	333	1	52	52	0	0	0
SERHL2	253190	ucsc.edu	37	22	42950046	42950046	+	Missense_Mutation	SNP	C	C	A	rs138377748	alternate_allele	TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	39	5	46	0	0	0	0	0	0
A4GALT	53947	ucsc.edu	37	22	43089055	43089055	+	Silent	SNP	C	C	A	rs6002904	byfrequency;alternate_allele	TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	40	4	47	0	105	105	0	0	0
SCUBE1	80274	ucsc.edu	37	22	43625174	43625174	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	53	5	73	0	0	0	0	0	0
PHF21B	112885	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	45312440	45312440	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	85	30	134	0	0	0	0	0	0
TTC38	55020	ucsc.edu	37	22	46685350	46685350	+	Silent	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	42	5	72	0	88	88	0	0	0
CELSR1	9620	ucsc.edu	37	22	46930962	46930962	+	Silent	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	27	4	39	0	13	13	0	0	0
CPNE9	151835	ucsc.edu;bcgsc.ca	37	3	9759712	9759712	+	Splice_Site	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	63	7	83	0	0	0	0	0	0
ATP2B2	491	ucsc.edu;bcgsc.ca	37	3	10392233	10392233	+	Missense_Mutation	SNP	C	C	A	rs200250553	alternate_allele	TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	63	8	90	0	1	1	0	0	0
SYN2	6854	ucsc.edu	37	3	12224826	12224826	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	36	4	23	0	0	0	0	0	0
IQSEC1	9922	ucsc.edu	37	3	12977378	12977378	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	42	4	53	0	10	9	1	0	0
GALNT15	117248	hgsc.bcm.edu	37	3	16217029	16217029	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	36	2	42	0	4	4	0	0	0
TRIM71	131405	ucsc.edu	37	3	32932925	32932925	+	Silent	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	41	4	48	0	0	0	0	0	0
MLH1	4292	hgsc.bcm.edu;bcgsc.ca	37	3	37067255	37067255	+	Missense_Mutation	SNP	G	G	T	rs63750361	byfrequency;alternate_allele	TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	186	12	206	0	14	14	0	0	0
PLCD1	5333	bcgsc.ca	37	3	38052822	38052822	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	90	8	135	0	14	14	0	0	0
FYCO1	79443	bcgsc.ca	37	3	45977987	45977987	+	Silent	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	132	7	150	1	16	16	0	0	0
XCR1	2829	ucsc.edu	37	3	46062953	46062953	+	Missense_Mutation	SNP	G	G	T	rs139879820	alternate_allele	TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	41	4	40	0	0	0	0	0	0
CCR1	1230	ucsc.edu	37	3	46245645	46245645	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	49	6	58	0	1	1	0	0	0
NBEAL2	23218	ucsc.edu	37	3	47049772	47049772	+	Splice_Site	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	25	4	23	0	2	2	0	0	0
SETD2	29072	bcgsc.ca	37	3	47079241	47079241	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	99	8	98	0	66	66	0	0	0
SETD2	29072	ucsc.edu	37	3	47125763	47125763	+	Missense_Mutation	SNP	G	G	T	rs144171734	alternate_allele	TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	40	4	31	0	30	30	0	0	0
WDR6	11180	ucsc.edu	37	3	49050221	49050221	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	43	4	54	0	104	104	0	0	0
DALRD3	55152	broad.mit.edu	37	3	49055671	49055671	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	6	2	5	0	0	0	0	0	0
BSN	8927	ucsc.edu	37	3	49689901	49689901	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	51	5	71	0	0	0	0	0	0
SEMA3G	56920	ucsc.edu	37	3	52472118	52472118	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	33	4	62	0	1	1	0	0	0
TNNC1	7134	bcgsc.ca	37	3	52486169	52486169	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	131	9	214	0	0	0	0	0	0
PBRM1	55193	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	52588791	52588791	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	39	19	47	0	6	2	4	0	0
IL17RB	55540	hgsc.bcm.edu	37	3	53891719	53891719	+	Splice_Site	SNP	T	T	C	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	57	3	64	0	215	215	0	0	0
IL17RB	55540	ucsc.edu	37	3	53892836	53892836	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	41	4	54	0	14	14	0	0	0
ARF4	378	ucsc.edu	37	3	57582838	57582838	+	Silent	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	41	4	67	0	365	365	0	0	0
ROBO1	6091	ucsc.edu	37	3	78706342	78706342	+	Silent	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	40	4	25	0	10	10	0	0	0
CRYBG3	131544	ucsc.edu	37	3	97617776	97617776	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	37	4	19	0	0	0	0	0	0
COL8A1	1295	ucsc.edu	37	3	99514429	99514429	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	39	4	50	0	1	1	0	0	0
SIDT1	54847	ucsc.edu	37	3	113320506	113320506	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	54	6	45	0	0	0	0	0	0
GSK3B	2932	bcgsc.ca	37	3	119582331	119582331	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	129	7	95	0	39	39	0	0	0
PDIA5	10954	bcgsc.ca	37	3	122880761	122880761	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	88	6	111	0	26	26	0	0	0
ADCY5	111	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	123010068	123010068	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	74	24	102	0	0	0	0	0	0
KALRN	8997	ucsc.edu	37	3	123983420	123983420	+	Silent	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	35	4	46	0	5	5	0	0	0
HEG1	57493	ucsc.edu	37	3	124732690	124732690	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	43	4	44	0	3	3	0	0	0
SLC12A8	84561	ucsc.edu	37	3	124906235	124906235	+	Missense_Mutation	SNP	G	G	T	rs201200353	alternate_allele	TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	36	4	56	0	35	34	1	0	0
KBTBD12	166348	ucsc.edu	37	3	127682185	127682185	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	34	4	15	0	0	0	0	0	0
C3orf27	23434	ucsc.edu	37	3	128292483	128292483	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	41	4	47	0	0	0	0	0	0
TMCC1	23023	bcgsc.ca	37	3	129389858	129389858	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	197	8	151	0	6	6	0	0	0
COL6A6	131873	ucsc.edu	37	3	130292860	130292860	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	43	4	49	0	0	0	0	0	0
NUDT16P1	152195	ucsc.edu	37	3	131082216	131082216	+	RNA	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	39	4	47	0	0	0	0	0	0
NPHP3-ACAD11	0	bcgsc.ca	37	3	132407880	132407880	+	RNA	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	87	9	69	0	0	0	0	0	0
TOPBP1	11073	ucsc.edu	37	3	133336116	133336116	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	50	7	39	0	19	19	0	0	0
CLDN18	51208	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	137742626	137742626	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	68	22	89	0	0	0	0	0	0
PRR23B	389151	ucsc.edu	37	3	138738992	138738992	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	48	5	75	0	0	0	0	0	0
PRR23C	389152	ucsc.edu	37	3	138763012	138763012	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	23	5	10	0	0	0	0	0	0
OTOL1	131149	ucsc.edu	37	3	161221702	161221702	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	43	4	23	0	0	0	0	0	0
SLC7A14	57709	ucsc.edu	37	3	170244615	170244615	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	37	4	41	0	0	0	0	0	0
FNDC3B	64778	hgsc.bcm.edu;bcgsc.ca	37	3	171965496	171965496	+	Silent	SNP	C	C	A	rs139712731	byfrequency;alternate_allele	TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	145	8	168	0	33	33	0	0	0
ABCC5	10057	ucsc.edu	37	3	183667893	183667893	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	42	5	39	0	8	8	0	0	0
DVL3	1857	bcgsc.ca	37	3	183882160	183882160	+	Silent	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	65	6	143	1	39	39	0	0	0
THPO	7066	ucsc.edu	37	3	184091301	184091301	+	Nonsense_Mutation	SNP	C	C	A	rs201796235	alternate_allele	TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	29	4	42	0	0	0	0	0	0
TMEM41A	90407	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	185209397	185209397	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	95	41	75	0	19	11	8	0	0
ZDHHC19	131540	bcgsc.ca	37	3	195938107	195938107	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	117	8	160	2	0	0	0	0	0
ZNF718	255403	hgsc.bcm.edu	37	4	154974	154974	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	11	2	5	0	3	3	0	0	0
FGFR3	2261	bcgsc.ca	37	4	1806088	1806088	+	Silent	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	154	8	281	0	21	21	0	0	0
ADD1	118	ucsc.edu	37	4	2896452	2896452	+	Silent	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	37	4	45	0	0	0	0	0	0
NOP14	8602	ucsc.edu	37	4	2945921	2945921	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	46	5	79	0	8	8	0	0	0
WDR1	9948	ucsc.edu	37	4	10100739	10100739	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	42	4	100	1	392	392	0	0	0
PROM1	8842	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	15989284	15989287	+	Frame_Shift_Del	DEL	ACCA	ACCA	-	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	ACCA	ACCA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	233	69	228	0	0	0	0	0	0
PROM1	8842	ucsc.edu	37	4	15992902	15992902	+	Silent	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	32	4	22	0	39	39	0	0	0
UBE2K	3093	bcgsc.ca	37	4	39780014	39780014	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	96	8	80	0	65	65	0	0	0
ATP10D	57205	broad.mit.edu	37	4	47538506	47538506	+	Silent	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	284	9	101	0	17	17	0	0	0
KDR	3791	ucsc.edu	37	4	55981537	55981537	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	33	4	25	0	2	2	0	0	0
EXOC1	55763	ucsc.edu;bcgsc.ca	37	4	56734538	56734538	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	60	7	40	0	21	21	0	0	0
PPAT	5471	ucsc.edu	37	4	57267614	57267614	+	Silent	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	41	4	22	0	7	7	0	0	0
PTPN13	5783	ucsc.edu	37	4	87705626	87705626	+	Silent	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	26	4	30	0	0	0	0	0	0
SLC10A6	345274	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	87749228	87749228	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	45	16	55	0	0	0	0	0	0
PPM1K	152926	ucsc.edu	37	4	89199680	89199680	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	47	5	65	0	8	8	0	0	0
HERC6	55008	ucsc.edu	37	4	89363482	89363482	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	32	4	24	0	23	23	0	0	0
CCSER1	401145	ucsc.edu	37	4	91701595	91701595	+	Silent	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	41	4	13	0	0	0	0	0	0
ATOH1	474	bcgsc.ca	37	4	94751074	94751074	+	Silent	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	185	9	188	0	0	0	0	0	0
PDLIM5	10611	ucsc.edu	37	4	95506154	95506154	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	32	4	23	0	0	0	0	0	0
CAMK2D	817	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	114434488	114434488	+	Silent	SNP	G	G	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	113	42	84	0	2	1	1	0	0
NDST4	64579	ucsc.edu	37	4	115891740	115891740	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	30	4	22	0	0	0	0	0	0
MAML3	55534	ucsc.edu	37	4	140640861	140640861	+	Silent	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	31	4	26	0	2	2	0	0	0
ZNF827	152485	bcgsc.ca	37	4	146823970	146823970	+	Silent	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	85	7	84	0	5	5	0	0	0
ARHGAP10	79658	bcgsc.ca	37	4	148968106	148968106	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	89	6	116	0	15	14	0	0	1
LRBA	987	bcgsc.ca	37	4	151388895	151388895	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	156	9	63	0	30	30	0	0	0
FNIP2	57600	ucsc.edu	37	4	159790400	159790400	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	32	4	47	0	33	33	0	0	0
NPY1R	4886	bcgsc.ca	37	4	164246582	164246582	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	187	8	111	0	33	33	0	0	0
DDX60	55601	ucsc.edu	37	4	169167599	169167599	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	59	7	27	0	13	13	0	0	0
DDX60L	91351	ucsc.edu	37	4	169377261	169377261	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	43	5	20	0	5	5	0	0	0
SH3RF1	57630	ucsc.edu	37	4	170028203	170028203	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	29	4	38	0	14	14	0	0	0
STOX2	56977	ucsc.edu	37	4	184930914	184930914	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	33	4	29	0	5	5	0	0	0
TLR3	7098	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	187004092	187004092	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	79	26	62	0	21	11	10	0	0
FAT1	2195	bcgsc.ca	37	4	187557908	187557908	+	Missense_Mutation	SNP	C	C	A	rs113970444	byfrequency;alternate_allele	TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	224	10	267	0	0	0	0	0	0
SLC6A18	348932	ucsc.edu	37	5	1244869	1244869	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	51	5	116	0	1	1	0	0	0
CDH9	1007	bcgsc.ca	37	5	26890039	26890039	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	164	10	86	0	0	0	0	0	0
ZFR	51663	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	32403408	32403408	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	160	70	102	0	41	21	20	0	0
SLC45A2	51151	bcgsc.ca	37	5	33947427	33947427	+	Silent	SNP	C	C	A	rs146560887	alternate_allele	TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	121	8	105	1	0	0	0	0	0
C7	730	ucsc.edu	37	5	40931192	40931192	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	47	5	32	0	0	0	0	0	0
MAP3K1	4214	ucsc.edu	37	5	56155678	56155678	+	Missense_Mutation	SNP	C	C	A	rs56160159	alternate_allele	TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	30	4	34	0	25	25	0	0	0
ADAMTS6	11174	bcgsc.ca	37	5	64766855	64766855	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	124	7	100	0	0	0	0	0	0
PIK3R1	5295	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	67576767	67576767	+	Silent	SNP	T	T	G	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	61	18	41	0	5	4	1	0	0
MAP1B	4131	bcgsc.ca	37	5	71494371	71494371	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	255	11	219	0	5	5	0	0	0
PAPD4	167153	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	78975410	78975410	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	73	33	57	0	0	0	0	0	0
CMYA5	202333	ucsc.edu	37	5	79035031	79035031	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	28	6	13	0	6	6	0	0	0
CMYA5	202333	ucsc.edu	37	5	79057656	79057656	+	Silent	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	34	4	27	0	3	3	0	0	0
EPB41L4A	64097	bcgsc.ca	37	5	111570404	111570404	+	Silent	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	215	11	127	0	24	24	0	0	0
RAPGEF6	51735	ucsc.edu	37	5	130825285	130825285	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	40	4	24	0	5	5	0	0	0
H2AFY	9555	ucsc.edu	37	5	134705770	134705770	+	Silent	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	31	4	38	0	187	187	0	0	0
PCDHA11	56138	ucsc.edu	37	5	140250956	140250956	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	32	4	47	0	4	4	0	0	0
PCDHGA8	9708	ucsc.edu	37	5	140773873	140773873	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	40	4	63	0	0	0	0	0	0
SPRY4	81848	bcgsc.ca	37	5	141694187	141694187	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	100	8	165	1	4	4	0	0	0
AFAP1L1	134265	ucsc.edu;bcgsc.ca	37	5	148695859	148695859	+	Silent	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	85	8	135	0	0	0	0	0	0
TIGD6	81789	ucsc.edu	37	5	149374387	149374387	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	29	4	15	0	6	6	0	0	0
GM2A	2760	ucsc.edu;bcgsc.ca	37	5	150639341	150639341	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	52	6	47	0	97	97	0	0	0
FAT2	2196	ucsc.edu	37	5	150911264	150911264	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	34	4	45	0	0	0	0	0	0
FAT2	2196	ucsc.edu	37	5	150914204	150914204	+	Splice_Site	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	43	4	71	0	0	0	0	0	0
ATP10B	23120	ucsc.edu	37	5	160059243	160059243	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	51	5	64	0	0	0	0	0	0
SLIT3	6586	hgsc.bcm.edu	37	5	168112858	168112858	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	28	2	28	1	5	5	0	0	0
SNCB	6620	ucsc.edu	37	5	176048270	176048270	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	25	4	36	0	0	0	0	0	0
SLC34A1	6569	bcgsc.ca	37	5	176823783	176823783	+	Silent	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	77	7	95	0	0	0	0	0	0
B4GALT7	11285	ucsc.edu	37	5	177035609	177035609	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	40	4	71	0	0	0	0	0	0
TRIM7	81786	ucsc.edu	37	5	180625784	180625784	+	Silent	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	36	4	35	0	0	0	0	0	0
C6orf195	154386	ucsc.edu	37	6	2624011	2624011	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	61	6	45	0	0	0	0	0	0
WRNIP1	56897	ucsc.edu	37	6	2784635	2784635	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	48	5	47	0	0	0	0	0	0
SYCP2L	221711	ucsc.edu	37	6	10959021	10959021	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	42	4	57	0	0	0	0	0	0
SLC17A1	6568	ucsc.edu	37	6	25819356	25819356	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	49	5	30	0	89	89	0	0	0
SLC17A1	6568	ucsc.edu	37	6	25819383	25819383	+	Splice_Site	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	28	5	23	0	11	11	0	0	0
ZSCAN9	7746	ucsc.edu	37	6	28200460	28200460	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	58	6	51	0	20	20	0	0	0
OR10C1	442194	bcgsc.ca	37	6	29408444	29408444	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	202	9	267	0	0	0	0	0	0
ABCF1	23	ucsc.edu;bcgsc.ca	37	6	30557472	30557472	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	83	10	106	0	0	0	0	0	0
C6orf15	29113	ucsc.edu	37	6	31079495	31079495	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	35	5	66	0	0	0	0	0	0
BAG6	7917	ucsc.edu	37	6	31609977	31609977	+	Silent	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	42	4	70	0	118	118	0	0	0
EHMT2	10919	bcgsc.ca	37	6	31848824	31848824	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	94	8	145	0	39	39	0	0	0
NELFE	7936	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	31922209	31922209	+	Silent	SNP	T	T	C	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	88	30	109	0	1	1	0	0	0
COL11A2	1302	ucsc.edu	37	6	33132085	33132085	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	39	4	60	0	0	0	0	0	0
KIFC1	3833	bcgsc.ca	37	6	33372926	33372926	+	Silent	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	124	7	198	0	1	1	0	0	0
SYNGAP1	8831	bcgsc.ca	37	6	33406692	33406692	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	121	9	181	0	0	0	0	0	0
ETV7	51513	ucsc.edu;bcgsc.ca	37	6	36339229	36339229	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	20	5	22	0	20	20	0	0	0
NCR2	9436	ucsc.edu	37	6	41304166	41304166	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	51	5	72	0	0	0	0	0	0
KLC4	89953	ucsc.edu	37	6	43038186	43038186	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	52	5	72	0	1	1	0	0	0
ABCC10	89845	bcgsc.ca	37	6	43403589	43403589	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	97	6	125	0	10	10	0	0	0
MRPL14	64928	bcgsc.ca	37	6	44081880	44081880	+	Silent	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	220	12	365	0	118	118	0	0	0
GPR116	221395	ucsc.edu	37	6	46826182	46826182	+	Missense_Mutation	SNP	C	C	A	rs145046261	alternate_allele	TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	36	4	35	0	11	11	0	0	0
DST	667	ucsc.edu	37	6	56437729	56437729	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	33	4	18	0	40	39	0	1	0
EYS	346007	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	66204808	66204808	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	97	32	54	0	0	0	0	0	0
COL19A1	1310	ucsc.edu	37	6	70840103	70840103	+	Silent	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	36	4	25	0	0	0	0	0	0
COL19A1	1310	ucsc.edu	37	6	70897895	70897895	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	42	5	48	0	0	0	0	0	0
DPPA5	340168	ucsc.edu	37	6	74063917	74063917	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	48	5	82	0	0	0	0	0	0
SNX14	57231	ucsc.edu	37	6	86239910	86239910	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	37	4	32	0	0	0	0	0	0
SNHG5	387066	ucsc.edu	37	6	86387387	86387387	+	RNA	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	41	4	29	0	1	1	0	0	0
MDN1	23195	ucsc.edu	37	6	90359901	90359901	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	50	5	32	0	17	17	0	0	0
BEND3	57673	ucsc.edu	37	6	107390458	107390458	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	30	4	67	0	0	0	0	0	0
ZBTB24	9841	bcgsc.ca	37	6	109802327	109802327	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	198	11	205	0	1	1	0	0	0
SLC22A16	85413	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	110746234	110746234	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	135	48	132	1	0	0	0	0	0
DCBLD1	285761	bcgsc.ca	37	6	117859837	117859837	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	104	9	94	0	4	4	0	0	0
LAMA2	3908	ucsc.edu	37	6	129618950	129618950	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	41	5	38	0	0	0	0	0	0
ENPP1	5167	ucsc.edu	37	6	132181527	132181527	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	39	4	16	0	0	0	0	0	0
AHI1	54806	ucsc.edu	37	6	135776923	135776923	+	Silent	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	30	4	16	0	5	5	0	0	0
TMEM181	57583	bcgsc.ca	37	6	159010769	159010769	+	Silent	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	74	7	66	0	10	10	0	0	0
PDE10A	10846	bcgsc.ca	37	6	165746581	165746581	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	118	8	131	0	28	28	0	0	0
BRAT1	221927	ucsc.edu	37	7	2594047	2594047	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	27	4	53	0	14	14	0	0	0
SDK1	221935	bcgsc.ca	37	7	4218193	4218193	+	Silent	SNP	C	C	A	rs139887943	byfrequency;alternate_allele	TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	179	9	180	1	5	5	0	0	0
TNRC18	84629	ucsc.edu;bcgsc.ca	37	7	5355642	5355642	+	Silent	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	36	5	51	0	28	28	0	0	0
EIF2AK1	27102	bcgsc.ca	37	7	6080730	6080730	+	Silent	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	170	8	167	0	71	71	0	0	0
ETV1	2115	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	13971323	13971323	+	Silent	SNP	C	C	G	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	45	17	46	0	2	1	1	0	0
TRIL	9865	bcgsc.ca	37	7	28996152	28996152	+	RNA	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	7	4	19	0	4	4	0	0	0
NME8	51314	ucsc.edu	37	7	37903981	37903981	+	Silent	SNP	G	G	T	rs199713986	alternate_allele	TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	36	4	24	0	0	0	0	0	0
HECW1	23072	ucsc.edu	37	7	43484484	43484484	+	Silent	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	64	6	95	0	2	2	0	0	0
SUN3	256979	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	48035693	48035693	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	126	40	115	0	0	0	0	0	0
EGFR	1956	ucsc.edu	37	7	55273143	55273143	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	41	4	57	0	49	49	0	0	0
NSUN5	55695	bcgsc.ca	37	7	72718004	72718004	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	67	6	82	0	41	41	0	0	0
CLIP2	7461	ucsc.edu	37	7	73770881	73770881	+	Silent	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	40	5	65	0	16	16	0	0	0
NSUN5P1	155400	ucsc.edu	37	7	75044512	75044512	+	RNA	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	57	4	67	0	2	2	0	0	0
CCDC146	57639	bcgsc.ca	37	7	76903057	76903057	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	184	8	124	0	12	12	0	0	0
CACNA2D1	781	ucsc.edu	37	7	81695796	81695796	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	45	5	22	0	0	0	0	0	0
ABCB1	5243	bcgsc.ca	37	7	87214933	87214933	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	124	8	95	1	72	72	0	0	0
PEX1	5189	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	92151473	92151473	+	Silent	SNP	A	A	G	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	130	55	90	0	9	3	6	0	0
C7orf43	55262	ucsc.edu	37	7	99754783	99754783	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	44	5	93	0	22	22	0	0	0
NYAP1	222950	ucsc.edu	37	7	100082964	100082964	+	Silent	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	28	4	19	0	1	1	0	0	0
RPL19P12	100129424	ucsc.edu	37	7	102782384	102782384	+	RNA	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	41	4	45	0	0	0	0	0	0
RELN	5649	ucsc.edu	37	7	103151359	103151359	+	Missense_Mutation	SNP	C	C	A	rs141115137		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	51	5	51	1	86	86	0	0	0
CDHR3	222256	ucsc.edu	37	7	105635247	105635247	+	Silent	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	26	4	24	0	3	3	0	0	0
NRCAM	4897	ucsc.edu	37	7	107831698	107831698	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	43	5	26	0	0	0	0	0	0
PPP1R3A	5506	bcgsc.ca	37	7	113519911	113519911	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	198	10	44	0	0	0	0	0	0
ING3	54556	ucsc.edu	37	7	120610914	120610914	+	Silent	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	49	5	40	0	8	8	0	0	0
RNF133	168433	bcgsc.ca	37	7	122338640	122338640	+	Silent	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	189	10	77	0	0	0	0	0	0
FLNC	2318	ucsc.edu	37	7	128470817	128470817	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	24	4	39	0	0	0	0	0	0
NUP205	23165	bcgsc.ca	37	7	135301970	135301970	+	Missense_Mutation	SNP	G	G	T	rs201319149	alternate_allele	TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	162	9	118	1	9	9	0	0	0
KIAA1549	57670	ucsc.edu	37	7	138536989	138536989	+	Silent	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	37	4	19	0	8	8	0	0	0
KCNH2	3757	bcgsc.ca	37	7	150649656	150649656	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	132	7	168	0	67	67	0	0	0
DPP6	1804	ucsc.edu	37	7	154680997	154680997	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	41	5	47	0	0	0	0	0	0
WDR60	55112	bcgsc.ca	37	7	158695251	158695251	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	122	10	99	0	26	26	0	0	0
WDR60	55112	bcgsc.ca	37	7	158711459	158711459	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	95	6	95	0	51	51	0	0	0
SGK223	0	ucsc.edu	37	8	8239148	8239148	+	Missense_Mutation	SNP	C	C	A	rs151137026	alternate_allele	TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	42	4	59	0	4	4	0	0	0
TUSC3	7991	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	15508312	15508312	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	222	96	163	0	0	0	0	0	0
FGL1	2267	bcgsc.ca	37	8	17743028	17743028	+	Silent	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	105	8	93	0	0	0	0	0	0
PSD3	23362	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	18430149	18430149	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	225	73	115	0	3	2	1	0	0
RHOBTB2	23221	ucsc.edu	37	8	22862047	22862047	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	30	4	84	1	5	5	0	0	0
ADRA1A	148	ucsc.edu	37	8	26721762	26721762	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	41	5	52	0	6	6	0	0	0
TRIM35	23087	broad.mit.edu;bcgsc.ca	37	8	27168425	27168425	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	24	9	42	0	9	5	4	0	0
PTK2B	2185	ucsc.edu	37	8	27289836	27289836	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	41	5	84	0	9	9	0	0	0
ZNF395	55893	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	28206721	28206721	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	70	22	110	0	53	36	17	0	0
ZNF395	55893	ucsc.edu	37	8	28218402	28218402	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	30	4	55	0	0	0	0	0	0
WRN	7486	bcgsc.ca	37	8	30921833	30921833	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	193	10	189	1	9	9	0	0	0
MCM4	4173	ucsc.edu	37	8	48874094	48874094	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	64	6	81	1	12	12	0	0	0
SNAI2	6591	ucsc.edu	37	8	49831548	49831548	+	Splice_Site	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	40	4	40	0	0	0	0	0	0
ZFHX4	79776	ucsc.edu	37	8	77618651	77618651	+	Silent	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	35	4	32	0	0	0	0	0	0
MRPS28	28957	ucsc.edu	37	8	80942421	80942421	+	Silent	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	35	4	52	0	59	59	0	0	0
RIPK2	8767	ucsc.edu;bcgsc.ca	37	8	90775129	90775129	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	73	7	42	0	9	9	0	0	0
SLC26A7	115111	ucsc.edu	37	8	92382039	92382039	+	Silent	SNP	C	C	A	rs184516896	alternate_allele	TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	33	4	24	0	2	2	0	0	0
MTSS1	9788	ucsc.edu;bcgsc.ca	37	8	125565622	125565622	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	39	6	60	0	22	22	0	0	0
OC90	729330	ucsc.edu	37	8	133037019	133037019	+	Silent	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	38	4	40	0	0	0	0	0	0
TRAPPC9	83696	bcgsc.ca	37	8	141294100	141294100	+	Missense_Mutation	SNP	C	C	A	rs147687394	alternate_allele	TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	99	8	130	1	15	15	0	0	0
ZC3H3	23144	ucsc.edu	37	8	144620241	144620241	+	Silent	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	36	4	73	0	7	7	0	0	0
TIGD5	84948	ucsc.edu	37	8	144681986	144681986	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	52	6	87	0	24	24	0	0	0
FAM83H	286077	ucsc.edu	37	8	144808180	144808180	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	29	5	47	0	84	83	0	0	1
PUF60	22827	ucsc.edu	37	8	144899873	144899873	+	Silent	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	39	5	47	0	142	142	0	0	0
PLEC	5339	ucsc.edu	37	8	145009069	145009069	+	Missense_Mutation	SNP	C	C	A	rs188076386	alternate_allele	TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	18	4	50	0	29	29	0	0	0
OPLAH	26873	ucsc.edu	37	8	145111556	145111556	+	Silent	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	33	5	38	0	49	49	0	0	0
GPAA1	8733	ucsc.edu	37	8	145138077	145138077	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	41	4	49	0	109	109	0	0	0
DGAT1	8694	hgsc.bcm.edu	37	8	145542536	145542536	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	31	2	37	0	36	36	0	0	0
TONSL	4796	ucsc.edu	37	8	145660201	145660201	+	Silent	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	47	5	75	0	0	0	0	0	0
DMRT3	58524	bcgsc.ca	37	9	977192	977192	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	64	6	83	0	0	0	0	0	0
TYRP1	7306	ucsc.edu	37	9	12694181	12694181	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	37	4	16	0	0	0	0	0	0
ARID3C	138715	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	34622092	34622092	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	130	44	184	0	0	0	0	0	0
RUSC2	9853	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	35547391	35547391	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	93	31	150	0	14	5	9	0	0
TLN1	7094	ucsc.edu;bcgsc.ca	37	9	35713957	35713957	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	69	7	88	0	0	0	0	0	0
FRMPD1	22844	bcgsc.ca	37	9	37737150	37737150	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	127	8	101	1	2	2	0	0	0
SHB	6461	ucsc.edu	37	9	37955895	37955895	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	37	4	27	0	57	57	0	0	0
KGFLP2	0	broad.mit.edu	37	9	41962602	41962602	+	RNA	SNP	G	G	T	rs59351873	bycluster	TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	90	7	60	1	2	1	1	0	0
SMC5	23137	ucsc.edu	37	9	72959149	72959149	+	Silent	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	34	4	28	0	14	14	0	0	0
PCSK5	5125	ucsc.edu	37	9	78808176	78808176	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	51	5	29	0	3	3	0	0	0
SPATA31D1	389763	bcgsc.ca	37	9	84609125	84609125	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	251	14	252	0	0	0	0	0	0
C9orf170	401535	bcgsc.ca	37	9	89771611	89771611	+	Silent	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	74	7	42	0	0	0	0	0	0
WNK2	65268	ucsc.edu	37	9	95992080	95992080	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	42	4	51	0	0	0	0	0	0
NANS	54187	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	100840514	100840514	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	127	47	167	0	63	52	11	0	0
CORO2A	7464	ucsc.edu	37	9	100897130	100897130	+	Silent	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	29	4	48	0	0	0	0	0	0
GRIN3A	116443	ucsc.edu	37	9	104499762	104499762	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	47	5	38	0	0	0	0	0	0
PRPF4	9128	bcgsc.ca	37	9	116041305	116041305	+	Silent	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	126	7	114	0	23	23	0	0	0
C9orf43	257169	ucsc.edu	37	9	116191653	116191653	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	37	4	36	0	1	1	0	0	0
AKNA	80709	ucsc.edu	37	9	117104375	117104375	+	Missense_Mutation	SNP	G	G	T	rs200572978	alternate_allele	TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	35	4	59	0	7	7	0	0	0
ASTN2	23245	bcgsc.ca	37	9	119488187	119488187	+	Missense_Mutation	SNP	C	C	A	rs150849349	byfrequency;alternate_allele	TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	128	7	100	1	14	14	0	0	0
NR6A1	2649	hgsc.bcm.edu;bcgsc.ca	37	9	127316717	127316717	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	135	7	107	0	3	3	0	0	0
GOLGA1	2800	bcgsc.ca	37	9	127651769	127651769	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	220	11	239	0	7	7	0	0	0
ZBTB34	403341	ucsc.edu	37	9	129642759	129642759	+	Silent	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	34	4	47	0	3	3	0	0	0
FAM129B	64855	ucsc.edu	37	9	130269572	130269572	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	41	4	59	0	117	117	0	0	0
TTC16	158248	ucsc.edu	37	9	130489606	130489606	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	34	4	43	0	2	2	0	0	0
SPTAN1	6709	ucsc.edu	37	9	131345547	131345547	+	Silent	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	36	4	46	0	0	0	0	0	0
C9orf114	51490	ucsc.edu	37	9	131587291	131587291	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	11	5	10	0	21	21	0	0	0
FIBCD1	84929	ucsc.edu	37	9	133805017	133805017	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	30	4	48	0	0	0	0	0	0
SURF1	6834	ucsc.edu	37	9	136218805	136218805	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	35	4	51	0	96	96	0	0	0
C9orf96	169436	ucsc.edu	37	9	136270533	136270533	+	Silent	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	49	5	48	0	1	1	0	0	0
VAV2	7410	ucsc.edu	37	9	136640099	136640099	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	35	4	56	0	28	28	0	0	0
KCNT1	57582	ucsc.edu;bcgsc.ca	37	9	138651551	138651551	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	59	6	72	0	0	0	0	0	0
ENTPD8	377841	ucsc.edu	37	9	140329722	140329722	+	Silent	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	39	5	60	0	6	6	0	0	0
EHMT1	79813	ucsc.edu	37	9	140728805	140728805	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	40	4	79	0	0	0	0	0	0
CSF2RA	1438	ucsc.edu;bcgsc.ca	37	X	1413319	1413319	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	42	6	131	1	23	23	0	0	0
ARSF	416	ucsc.edu	37	X	3030441	3030441	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	59	6	49	0	0	0	0	0	0
MXRA5	25878	ucsc.edu	37	X	3240899	3240899	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	43	4	34	0	2	2	0	0	0
STS	412	ucsc.edu	37	X	7177581	7177581	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	36	4	31	0	5	5	0	0	0
PRPS2	5634	bcgsc.ca	37	X	12817489	12817489	+	Silent	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	80	6	76	0	54	54	0	0	0
CNKSR2	22866	ucsc.edu	37	X	21581397	21581397	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	38	4	12	0	0	0	0	0	0
MAGEB6	158809	ucsc.edu	37	X	26211971	26211971	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	42	5	62	0	0	0	0	0	0
MAGEB4	4115	ucsc.edu	37	X	30260934	30260934	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	42	4	40	0	0	0	0	0	0
CYBB	1536	bcgsc.ca	37	X	37665662	37665662	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	79	6	42	0	25	25	0	0	0
USP9X	8239	ucsc.edu	37	X	41022077	41022077	+	Silent	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	41	4	19	0	25	25	0	0	0
FUNDC1	139341	ucsc.edu	37	X	44383474	44383474	+	Silent	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	36	4	37	0	37	37	0	0	0
UBA1	7317	ucsc.edu	37	X	47074304	47074304	+	Silent	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	42	4	77	0	370	369	1	0	0
HDAC6	10013	ucsc.edu	37	X	48664818	48664818	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	39	4	55	0	26	26	0	0	0
CCDC120	90060	ucsc.edu	37	X	48923086	48923086	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	24	4	20	0	13	13	0	0	0
SHROOM4	57477	ucsc.edu	37	X	50345766	50345766	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	38	4	43	0	1	1	0	0	0
SMC1A	8243	ucsc.edu	37	X	53440051	53440051	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	39	4	35	0	13	12	1	0	0
FGD1	2245	ucsc.edu	37	X	54482659	54482659	+	Silent	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	27	4	29	0	0	0	0	0	0
ALAS2	212	ucsc.edu	37	X	55052317	55052317	+	Silent	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	53	5	40	0	7	7	0	0	0
ITGB1BP2	26548	ucsc.edu	37	X	70522260	70522260	+	Splice_Site	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	37	4	45	0	0	0	0	0	0
ITGB1BP2	26548	ucsc.edu	37	X	70523525	70523525	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	34	5	49	0	0	0	0	0	0
TAF1	6872	ucsc.edu;bcgsc.ca	37	X	70598120	70598120	+	Silent	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	46	6	48	0	4	4	0	0	0
SH3BGRL	6451	ucsc.edu	37	X	80533896	80533896	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	44	5	34	0	162	162	0	0	0
DACH2	117154	ucsc.edu	37	X	85404026	85404026	+	Silent	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	30	4	45	0	0	0	0	0	0
KLHL4	56062	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	86773063	86773063	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	31	26	16	0	1	0	1	0	0
ARMCX2	9823	ucsc.edu	37	X	100912056	100912056	+	Silent	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	27	4	34	0	14	14	0	0	0
NRK	203447	broad.mit.edu	37	X	105167297	105167297	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	7	2	10	0	0	0	0	0	0
MID2	11043	bcgsc.ca	37	X	107148801	107148801	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	151	11	66	0	2	1	0	1	0
LRCH2	57631	ucsc.edu	37	X	114347865	114347865	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	31	4	10	0	0	0	0	0	0
GLUD2	2747	ucsc.edu	37	X	120182120	120182120	+	Silent	SNP	C	C	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	81	1	72	0	5	5	0	0	0
TENM1	10178	bcgsc.ca	37	X	123526153	123526153	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	79	6	41	0	3	3	0	0	0
DCAF12L1	139170	ucsc.edu	37	X	125685421	125685421	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	45	5	38	0	9	9	0	0	0
UTP14A	10813	bcgsc.ca	37	X	129059135	129059135	+	Silent	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	107	8	125	0	2	2	0	0	0
ELF4	2000	ucsc.edu	37	X	129201355	129201355	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	38	5	74	0	18	18	0	0	0
TFDP3	51270	ucsc.edu	37	X	132351710	132351710	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	39	4	39	0	0	0	0	0	0
CDR1	1038	hgsc.bcm.edu	37	X	139866440	139866440	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	93	6	46	2	1	1	0	0	0
AFF2	2334	bcgsc.ca	37	X	148069037	148069037	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	121	8	78	0	3	3	0	0	0
CD99L2	83692	ucsc.edu	37	X	149962197	149962197	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	54	5	44	0	80	80	0	0	0
CNGA2	1260	ucsc.edu	37	X	150912265	150912265	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	43	4	36	0	0	0	0	0	0
ZNF185	7739	ucsc.edu	37	X	152113849	152113849	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	21	4	22	0	16	8	0	8	0
HCFC1	3054	ucsc.edu	37	X	153220883	153220883	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	42	4	54	0	33	33	0	0	0
HCFC1	3054	ucsc.edu	37	X	153220973	153220973	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	40	4	46	0	29	29	0	0	0
GDI1	2664	bcgsc.ca	37	X	153668314	153668314	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	185	8	330	0	84	84	0	0	0
GAB3	139716	hgsc.bcm.edu	37	X	153928305	153928305	+	Silent	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	137	7	84	0	2	2	0	0	0
HDGF	3068	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	156715103	156715104	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	21	13	42	0	0	0	0	0	0
MAST3	23031	broad.mit.edu;bcgsc.ca	37	19	18254602	18254603	+	Frame_Shift_Ins	INS	-	-	CT	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	23	9	37	0	0	0	0	0	0
HAO1	54363	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	20	7886831	7886832	+	In_Frame_Ins	INS	-	-	TTT	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	183	51	120	0	0	0	0	0	0
BPIFB2	80341	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	20	31604905	31604906	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	111	35	143	0	0	0	0	0	0
DOLK	22845	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	9	131708944	131708945	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	105	36	146	0	0	0	0	0	0
GAGE2A	729447	broad.mit.edu	37	X	49208295	49208296	+	In_Frame_Ins	INS	-	-	TAT	rs33925578		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	542	2	601	0	0	0	0	0	0
COL18A1	80781	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	21	46911142	46911143	+	Missense_Mutation	DNP	GA	GA	AT	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	GA	GA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	51	18	65	0	0	0	0	0	0
CCT7	10574	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	73471795	73471796	+	Nonsense_Mutation	DNP	GC	GC	TT	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	GC	GC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	35	11	40	0	0	0	0	0	0
