Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	TTotCov	TVarCov	NTotCov	NVarCov	Trna_tot	Trna_ref	Trna_var	Trna_alt1	Trna_alt2
PRAMEF11	440560	broad.mit.edu	37	1	12887546	12887546	+	Missense_Mutation	SNP	C	C	T	rs71232899		TCGA-AL-3468-01A-01D-1252-08	TCGA-AL-3468-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3ace8906-6fda-48fe-8e46-4140e9ed7fce	e04284b9-b5a9-481b-b1bb-0377a566a154	495	7	585	1	0	0	0	0	0
HSPG2	3339	broad.mit.edu	37	1	22214000	22214000	+	Missense_Mutation	SNP	C	C	T	rs148693072	bycluster;by1000genomes;alternate_allele	TCGA-AL-3468-01A-01D-1252-08	TCGA-AL-3468-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3ace8906-6fda-48fe-8e46-4140e9ed7fce	e04284b9-b5a9-481b-b1bb-0377a566a154	129	5	101	1	3	3	0	0	0
YBX1	4904	hgsc.bcm.edu	37	1	43166452	43166452	+	Silent	SNP	G	G	A	novel		TCGA-AL-3468-01A-01D-1252-08	TCGA-AL-3468-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3ace8906-6fda-48fe-8e46-4140e9ed7fce	e04284b9-b5a9-481b-b1bb-0377a566a154	44	3	24	0	4	4	0	0	0
TRIM33	51592	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	114964258	114964258	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AL-3468-01A-01D-1252-08	TCGA-AL-3468-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3ace8906-6fda-48fe-8e46-4140e9ed7fce	e04284b9-b5a9-481b-b1bb-0377a566a154	88	37	139	1	1	0	1	0	0
ADAM15	8751	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	155032387	155032387	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AL-3468-01A-01D-1252-08	TCGA-AL-3468-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3ace8906-6fda-48fe-8e46-4140e9ed7fce	e04284b9-b5a9-481b-b1bb-0377a566a154	458	179	406	0	0	0	0	0	0
ASH1L	55870	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	155408153	155408153	+	Silent	SNP	T	T	A	novel		TCGA-AL-3468-01A-01D-1252-08	TCGA-AL-3468-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3ace8906-6fda-48fe-8e46-4140e9ed7fce	e04284b9-b5a9-481b-b1bb-0377a566a154	228	76	331	0	6	4	2	0	0
MSTO2P	100129405	broad.mit.edu	37	1	155719118	155719118	+	RNA	SNP	C	C	G	novel		TCGA-AL-3468-01A-01D-1252-08	TCGA-AL-3468-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3ace8906-6fda-48fe-8e46-4140e9ed7fce	e04284b9-b5a9-481b-b1bb-0377a566a154	63	17	37	11	0	0	0	0	0
ISG20L2	81875	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	156693972	156693972	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AL-3468-01A-01D-1252-08	TCGA-AL-3468-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3ace8906-6fda-48fe-8e46-4140e9ed7fce	e04284b9-b5a9-481b-b1bb-0377a566a154	226	21	239	0	17	17	0	0	0
FCRL4	83417	broad.mit.edu	37	1	157557285	157557285	+	Silent	SNP	G	G	A	novel		TCGA-AL-3468-01A-01D-1252-08	TCGA-AL-3468-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3ace8906-6fda-48fe-8e46-4140e9ed7fce	e04284b9-b5a9-481b-b1bb-0377a566a154	364	6	298	0	0	0	0	0	0
IGSF9	57549	hgsc.bcm.edu;broad.mit.edu	37	1	159898194	159898194	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AL-3468-01A-01D-1252-08	TCGA-AL-3468-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3ace8906-6fda-48fe-8e46-4140e9ed7fce	e04284b9-b5a9-481b-b1bb-0377a566a154	15	8	26	0	2	2	0	0	0
LY9	4063	hgsc.bcm.edu;bcgsc.ca	37	1	160771585	160771585	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-AL-3468-01A-01D-1252-08	TCGA-AL-3468-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3ace8906-6fda-48fe-8e46-4140e9ed7fce	e04284b9-b5a9-481b-b1bb-0377a566a154	284	121	251	0	0	0	0	0	0
KLHL20	27252	ucsc.edu	37	1	173702893	173702893	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AL-3468-01A-01D-1252-08	TCGA-AL-3468-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3ace8906-6fda-48fe-8e46-4140e9ed7fce	e04284b9-b5a9-481b-b1bb-0377a566a154	108	15	142	17	2	2	0	0	0
PROX1	5629	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	214178606	214178606	+	Silent	SNP	C	C	T	novel		TCGA-AL-3468-01A-01D-1252-08	TCGA-AL-3468-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3ace8906-6fda-48fe-8e46-4140e9ed7fce	e04284b9-b5a9-481b-b1bb-0377a566a154	91	29	148	0	0	0	0	0	0
BPNT1	10380	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	220232235	220232235	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AL-3468-01A-01D-1252-08	TCGA-AL-3468-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3ace8906-6fda-48fe-8e46-4140e9ed7fce	e04284b9-b5a9-481b-b1bb-0377a566a154	268	74	383	0	13	13	0	0	0
LBR	3930	broad.mit.edu	37	1	225611758	225611758	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AL-3468-01A-01D-1252-08	TCGA-AL-3468-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3ace8906-6fda-48fe-8e46-4140e9ed7fce	e04284b9-b5a9-481b-b1bb-0377a566a154	636	8	809	1	4	4	0	0	0
ZNF503	84858	hgsc.bcm.edu;broad.mit.edu	37	10	77159027	77159027	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AL-3468-01A-01D-1252-08	TCGA-AL-3468-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3ace8906-6fda-48fe-8e46-4140e9ed7fce	e04284b9-b5a9-481b-b1bb-0377a566a154	50	32	20	0	16	8	8	0	0
KIF20B	9585	broad.mit.edu	37	10	91470809	91470809	+	Silent	SNP	A	A	G	novel		TCGA-AL-3468-01A-01D-1252-08	TCGA-AL-3468-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3ace8906-6fda-48fe-8e46-4140e9ed7fce	e04284b9-b5a9-481b-b1bb-0377a566a154	103	3	149	0	0	0	0	0	0
ADD3	120	broad.mit.edu	37	10	111860425	111860425	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AL-3468-01A-01D-1252-08	TCGA-AL-3468-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3ace8906-6fda-48fe-8e46-4140e9ed7fce	e04284b9-b5a9-481b-b1bb-0377a566a154	59	4	61	0	30	30	0	0	0
CTBP2	1488	hgsc.bcm.edu	37	10	126715159	126715159	+	Silent	SNP	A	A	G	novel		TCGA-AL-3468-01A-01D-1252-08	TCGA-AL-3468-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3ace8906-6fda-48fe-8e46-4140e9ed7fce	e04284b9-b5a9-481b-b1bb-0377a566a154	15	3	4	0	0	0	0	0	0
KNDC1	85442	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	10	135009191	135009191	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AL-3468-01A-01D-1252-08	TCGA-AL-3468-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3ace8906-6fda-48fe-8e46-4140e9ed7fce	e04284b9-b5a9-481b-b1bb-0377a566a154	55	21	44	0	6	5	1	0	0
PHRF1	57661	broad.mit.edu	37	11	597418	597418	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AL-3468-01A-01D-1252-08	TCGA-AL-3468-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3ace8906-6fda-48fe-8e46-4140e9ed7fce	e04284b9-b5a9-481b-b1bb-0377a566a154	28	7	17	0	3	3	0	0	0
LOC650368	0	ucsc.edu	37	11	3427885	3427885	+	RNA	SNP	A	A	G	novel		TCGA-AL-3468-01A-01D-1252-08	TCGA-AL-3468-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3ace8906-6fda-48fe-8e46-4140e9ed7fce	e04284b9-b5a9-481b-b1bb-0377a566a154	37	4	29	1	14	14	0	0	0
OR10A5	144124	broad.mit.edu	37	11	6867579	6867579	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AL-3468-01A-01D-1252-08	TCGA-AL-3468-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3ace8906-6fda-48fe-8e46-4140e9ed7fce	e04284b9-b5a9-481b-b1bb-0377a566a154	250	7	321	1	0	0	0	0	0
OR5P2	120065	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	7817940	7817940	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AL-3468-01A-01D-1252-08	TCGA-AL-3468-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3ace8906-6fda-48fe-8e46-4140e9ed7fce	e04284b9-b5a9-481b-b1bb-0377a566a154	82	31	128	0	0	0	0	0	0
HNRNPUL2-BSCL2	0	bcgsc.ca	37	11	62490280	62490280	+	RNA	SNP	T	T	G	novel		TCGA-AL-3468-01A-01D-1252-08	TCGA-AL-3468-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3ace8906-6fda-48fe-8e46-4140e9ed7fce	e04284b9-b5a9-481b-b1bb-0377a566a154	73	24	71	0	0	0	0	0	0
NXF1	10482	hgsc.bcm.edu;bcgsc.ca	37	11	62567921	62567921	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AL-3468-01A-01D-1252-08	TCGA-AL-3468-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3ace8906-6fda-48fe-8e46-4140e9ed7fce	e04284b9-b5a9-481b-b1bb-0377a566a154	80	27	92	0	11	11	0	0	0
CD248	57124	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	66082566	66082566	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-AL-3468-01A-01D-1252-08	TCGA-AL-3468-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3ace8906-6fda-48fe-8e46-4140e9ed7fce	e04284b9-b5a9-481b-b1bb-0377a566a154	148	64	143	0	0	0	0	0	0
MAP6	4135	hgsc.bcm.edu	37	11	75378674	75378674	+	Missense_Mutation	SNP	A	A	C	rs12225010		TCGA-AL-3468-01A-01D-1252-08	TCGA-AL-3468-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3ace8906-6fda-48fe-8e46-4140e9ed7fce	e04284b9-b5a9-481b-b1bb-0377a566a154	2	2	0	0	0	0	0	0	0
CCDC67	159989	broad.mit.edu	37	11	93090210	93090210	+	Splice_Site	SNP	G	G	T	novel		TCGA-AL-3468-01A-01D-1252-08	TCGA-AL-3468-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3ace8906-6fda-48fe-8e46-4140e9ed7fce	e04284b9-b5a9-481b-b1bb-0377a566a154	7	3	9	0	0	0	0	0	0
GLB1L3	112937	hgsc.bcm.edu;broad.mit.edu	37	11	134147793	134147793	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AL-3468-01A-01D-1252-08	TCGA-AL-3468-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3ace8906-6fda-48fe-8e46-4140e9ed7fce	e04284b9-b5a9-481b-b1bb-0377a566a154	50	25	48	0	0	0	0	0	0
LOC100288778	0	broad.mit.edu	37	12	92000	92000	+	Missense_Mutation	SNP	A	A	T	rs71260406		TCGA-AL-3468-01A-01D-1252-08	TCGA-AL-3468-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3ace8906-6fda-48fe-8e46-4140e9ed7fce	e04284b9-b5a9-481b-b1bb-0377a566a154	18	7	10	0	24	4	0	0	20
LTBR	4055	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	6494285	6494285	+	Silent	SNP	C	C	T	novel		TCGA-AL-3468-01A-01D-1252-08	TCGA-AL-3468-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3ace8906-6fda-48fe-8e46-4140e9ed7fce	e04284b9-b5a9-481b-b1bb-0377a566a154	446	261	280	0	193	66	127	0	0
TAS2R10	50839	hgsc.bcm.edu;broad.mit.edu	37	12	10978002	10978002	+	Silent	SNP	C	C	T	novel		TCGA-AL-3468-01A-01D-1252-08	TCGA-AL-3468-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3ace8906-6fda-48fe-8e46-4140e9ed7fce	e04284b9-b5a9-481b-b1bb-0377a566a154	41	3	186	1	0	0	0	0	0
TM7SF3	51768	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	27156249	27156249	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AL-3468-01A-01D-1252-08	TCGA-AL-3468-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3ace8906-6fda-48fe-8e46-4140e9ed7fce	e04284b9-b5a9-481b-b1bb-0377a566a154	65	23	103	0	9	5	4	0	0
DENND5B	160518	hgsc.bcm.edu;broad.mit.edu	37	12	31633182	31633182	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AL-3468-01A-01D-1252-08	TCGA-AL-3468-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3ace8906-6fda-48fe-8e46-4140e9ed7fce	e04284b9-b5a9-481b-b1bb-0377a566a154	7	3	19	0	0	0	0	0	0
TIMELESS	8914	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	56822670	56822670	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AL-3468-01A-01D-1252-08	TCGA-AL-3468-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3ace8906-6fda-48fe-8e46-4140e9ed7fce	e04284b9-b5a9-481b-b1bb-0377a566a154	116	32	90	0	0	0	0	0	0
GRIP1	23426	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	66765685	66765685	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AL-3468-01A-01D-1252-08	TCGA-AL-3468-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3ace8906-6fda-48fe-8e46-4140e9ed7fce	e04284b9-b5a9-481b-b1bb-0377a566a154	187	51	133	0	9	8	1	0	0
POLR3B	55703	broad.mit.edu	37	12	106820975	106820975	+	Missense_Mutation	SNP	C	C	T	rs201079775		TCGA-AL-3468-01A-01D-1252-08	TCGA-AL-3468-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3ace8906-6fda-48fe-8e46-4140e9ed7fce	e04284b9-b5a9-481b-b1bb-0377a566a154	17	6	30	5	0	0	0	0	0
SSH1	54434	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	109182194	109182194	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AL-3468-01A-01D-1252-08	TCGA-AL-3468-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3ace8906-6fda-48fe-8e46-4140e9ed7fce	e04284b9-b5a9-481b-b1bb-0377a566a154	200	133	94	0	7	4	3	0	0
CUX2	23316	hgsc.bcm.edu	37	12	111758402	111758402	+	Silent	SNP	G	G	A	novel		TCGA-AL-3468-01A-01D-1252-08	TCGA-AL-3468-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3ace8906-6fda-48fe-8e46-4140e9ed7fce	e04284b9-b5a9-481b-b1bb-0377a566a154	21	7	12	0	0	0	0	0	0
ZCCHC8	55596	hgsc.bcm.edu	37	12	122966493	122966493	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AL-3468-01A-01D-1252-08	TCGA-AL-3468-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3ace8906-6fda-48fe-8e46-4140e9ed7fce	e04284b9-b5a9-481b-b1bb-0377a566a154	40	2	69	0	1	1	0	0	0
ATP7B	540	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	13	52548120	52548120	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-AL-3468-01A-01D-1252-08	TCGA-AL-3468-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3ace8906-6fda-48fe-8e46-4140e9ed7fce	e04284b9-b5a9-481b-b1bb-0377a566a154	147	59	163	0	0	0	0	0	0
KIAA0586	9786	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	58949256	58949256	+	Silent	SNP	C	C	T	novel		TCGA-AL-3468-01A-01D-1252-08	TCGA-AL-3468-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3ace8906-6fda-48fe-8e46-4140e9ed7fce	e04284b9-b5a9-481b-b1bb-0377a566a154	55	26	77	0	0	0	0	0	0
ZFP36L1	677	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	69256762	69256762	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AL-3468-01A-01D-1252-08	TCGA-AL-3468-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3ace8906-6fda-48fe-8e46-4140e9ed7fce	e04284b9-b5a9-481b-b1bb-0377a566a154	116	42	99	1	156	82	74	0	0
TRIP11	9321	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	92491671	92491671	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-AL-3468-01A-01D-1252-08	TCGA-AL-3468-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3ace8906-6fda-48fe-8e46-4140e9ed7fce	e04284b9-b5a9-481b-b1bb-0377a566a154	53	28	116	0	3	0	3	0	0
EIF5	1983	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	14	103807312	103807312	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-AL-3468-01A-01D-1252-08	TCGA-AL-3468-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3ace8906-6fda-48fe-8e46-4140e9ed7fce	e04284b9-b5a9-481b-b1bb-0377a566a154	54	16	118	0	0	0	0	0	0
LOC646214	0	broad.mit.edu	37	15	21936834	21936834	+	RNA	SNP	G	G	T	novel		TCGA-AL-3468-01A-01D-1252-08	TCGA-AL-3468-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3ace8906-6fda-48fe-8e46-4140e9ed7fce	e04284b9-b5a9-481b-b1bb-0377a566a154	218	9	332	9	0	0	0	0	0
USP3	9960	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	63882867	63882867	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AL-3468-01A-01D-1252-08	TCGA-AL-3468-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3ace8906-6fda-48fe-8e46-4140e9ed7fce	e04284b9-b5a9-481b-b1bb-0377a566a154	207	79	179	0	1	1	0	0	0
DENND4A	10260	hgsc.bcm.edu;broad.mit.edu	37	15	66021476	66021476	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AL-3468-01A-01D-1252-08	TCGA-AL-3468-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3ace8906-6fda-48fe-8e46-4140e9ed7fce	e04284b9-b5a9-481b-b1bb-0377a566a154	8	2	29	0	1	1	0	0	0
CRTC3	64784	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	91161146	91161146	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-AL-3468-01A-01D-1252-08	TCGA-AL-3468-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3ace8906-6fda-48fe-8e46-4140e9ed7fce	e04284b9-b5a9-481b-b1bb-0377a566a154	102	42	99	0	3	2	1	0	0
CACNA1H	8912	hgsc.bcm.edu;broad.mit.edu	37	16	1263882	1263882	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AL-3468-01A-01D-1252-08	TCGA-AL-3468-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3ace8906-6fda-48fe-8e46-4140e9ed7fce	e04284b9-b5a9-481b-b1bb-0377a566a154	34	21	20	0	0	0	0	0	0
SRCAP	10847	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	30736125	30736125	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-AL-3468-01A-01D-1252-08	TCGA-AL-3468-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3ace8906-6fda-48fe-8e46-4140e9ed7fce	e04284b9-b5a9-481b-b1bb-0377a566a154	98	32	49	0	10	8	2	0	0
COQ9	57017	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	57494525	57494525	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AL-3468-01A-01D-1252-08	TCGA-AL-3468-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3ace8906-6fda-48fe-8e46-4140e9ed7fce	e04284b9-b5a9-481b-b1bb-0377a566a154	124	23	118	1	619	420	199	0	0
MMP15	4324	broad.mit.edu	37	16	58073792	58073792	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AL-3468-01A-01D-1252-08	TCGA-AL-3468-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3ace8906-6fda-48fe-8e46-4140e9ed7fce	e04284b9-b5a9-481b-b1bb-0377a566a154	150	4	85	0	17	16	1	0	0
CCDC144B	284047	bcgsc.ca	37	17	18446396	18446396	+	RNA	SNP	G	G	A	novel		TCGA-AL-3468-01A-01D-1252-08	TCGA-AL-3468-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3ace8906-6fda-48fe-8e46-4140e9ed7fce	e04284b9-b5a9-481b-b1bb-0377a566a154	62	46	80	0	0	0	0	0	0
NEK8	284086	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	27067537	27067537	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-AL-3468-01A-01D-1252-08	TCGA-AL-3468-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3ace8906-6fda-48fe-8e46-4140e9ed7fce	e04284b9-b5a9-481b-b1bb-0377a566a154	324	87	202	0	1	0	1	0	0
CACNB1	782	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	37331566	37331566	+	Silent	SNP	C	C	T	novel		TCGA-AL-3468-01A-01D-1252-08	TCGA-AL-3468-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3ace8906-6fda-48fe-8e46-4140e9ed7fce	e04284b9-b5a9-481b-b1bb-0377a566a154	853	268	575	1	0	0	0	0	0
CDC6	990	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	38447499	38447499	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AL-3468-01A-01D-1252-08	TCGA-AL-3468-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3ace8906-6fda-48fe-8e46-4140e9ed7fce	e04284b9-b5a9-481b-b1bb-0377a566a154	184	108	123	0	1	0	1	0	0
DDX5	1655	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	62500099	62500102	+	Frame_Shift_Del	DEL	ACAG	ACAG	-	novel		TCGA-AL-3468-01A-01D-1252-08	TCGA-AL-3468-10A-01D-1252-08	ACAG	ACAG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3ace8906-6fda-48fe-8e46-4140e9ed7fce	e04284b9-b5a9-481b-b1bb-0377a566a154	179	45	294	0	0	0	0	0	0
KCNJ2	3759	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	68171425	68171425	+	Missense_Mutation	SNP	G	G	A	rs199473653		TCGA-AL-3468-01A-01D-1252-08	TCGA-AL-3468-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3ace8906-6fda-48fe-8e46-4140e9ed7fce	e04284b9-b5a9-481b-b1bb-0377a566a154	310	108	256	0	0	0	0	0	0
RAB37	326624	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	72736931	72736931	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AL-3468-01A-01D-1252-08	TCGA-AL-3468-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3ace8906-6fda-48fe-8e46-4140e9ed7fce	e04284b9-b5a9-481b-b1bb-0377a566a154	508	34	351	0	0	0	0	0	0
ACOX1	51	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	73945931	73945931	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AL-3468-01A-01D-1252-08	TCGA-AL-3468-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3ace8906-6fda-48fe-8e46-4140e9ed7fce	e04284b9-b5a9-481b-b1bb-0377a566a154	178	100	138	0	8	6	2	0	0
GAREM	64762	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	29867890	29867890	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AL-3468-01A-01D-1252-08	TCGA-AL-3468-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3ace8906-6fda-48fe-8e46-4140e9ed7fce	e04284b9-b5a9-481b-b1bb-0377a566a154	139	55	187	0	6	2	4	0	0
HMSD	284293	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	61621714	61621714	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AL-3468-01A-01D-1252-08	TCGA-AL-3468-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3ace8906-6fda-48fe-8e46-4140e9ed7fce	e04284b9-b5a9-481b-b1bb-0377a566a154	156	13	269	0	0	0	0	0	0
COL5A3	50509	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	10096525	10096525	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AL-3468-01A-01D-1252-08	TCGA-AL-3468-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3ace8906-6fda-48fe-8e46-4140e9ed7fce	e04284b9-b5a9-481b-b1bb-0377a566a154	473	258	571	1	0	0	0	0	0
SMARCA4	6597	hgsc.bcm.edu;broad.mit.edu	37	19	11141551	11141551	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-AL-3468-01A-01D-1252-08	TCGA-AL-3468-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3ace8906-6fda-48fe-8e46-4140e9ed7fce	e04284b9-b5a9-481b-b1bb-0377a566a154	37	19	22	0	42	16	26	0	0
HAVCR1P1	100101266	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	24345885	24345885	+	RNA	SNP	T	T	A	novel		TCGA-AL-3468-01A-01D-1252-08	TCGA-AL-3468-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3ace8906-6fda-48fe-8e46-4140e9ed7fce	e04284b9-b5a9-481b-b1bb-0377a566a154	56	24	79	0	0	0	0	0	0
PLEKHG2	64857	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	39915323	39915323	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AL-3468-01A-01D-1252-08	TCGA-AL-3468-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3ace8906-6fda-48fe-8e46-4140e9ed7fce	e04284b9-b5a9-481b-b1bb-0377a566a154	319	126	292	0	13	8	5	0	0
ERF	2077	hgsc.bcm.edu	37	19	42753342	42753342	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-AL-3468-01A-01D-1252-08	TCGA-AL-3468-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3ace8906-6fda-48fe-8e46-4140e9ed7fce	e04284b9-b5a9-481b-b1bb-0377a566a154	54	3	46	0	73	73	0	0	0
MEGF8	1954	hgsc.bcm.edu;broad.mit.edu	37	19	42872696	42872696	+	Silent	SNP	T	T	C	novel		TCGA-AL-3468-01A-01D-1252-08	TCGA-AL-3468-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3ace8906-6fda-48fe-8e46-4140e9ed7fce	e04284b9-b5a9-481b-b1bb-0377a566a154	29	13	28	0	15	4	11	0	0
KCNC3	3748	broad.mit.edu	37	19	50832052	50832052	+	Silent	SNP	G	G	A	novel		TCGA-AL-3468-01A-01D-1252-08	TCGA-AL-3468-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3ace8906-6fda-48fe-8e46-4140e9ed7fce	e04284b9-b5a9-481b-b1bb-0377a566a154	10	4	16	0	0	0	0	0	0
HAS1	3036	hgsc.bcm.edu	37	19	52222732	52222732	+	Silent	SNP	G	G	A	rs61736496		TCGA-AL-3468-01A-01D-1252-08	TCGA-AL-3468-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3ace8906-6fda-48fe-8e46-4140e9ed7fce	e04284b9-b5a9-481b-b1bb-0377a566a154	11	6	3	2	0	0	0	0	0
LILRB3	11025	broad.mit.edu	37	19	54721042	54721042	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AL-3468-01A-01D-1252-08	TCGA-AL-3468-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3ace8906-6fda-48fe-8e46-4140e9ed7fce	e04284b9-b5a9-481b-b1bb-0377a566a154	146	6	143	1	1	1	0	0	0
LENG8	114823	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	54963393	54963393	+	Silent	SNP	T	T	G	novel		TCGA-AL-3468-01A-01D-1252-08	TCGA-AL-3468-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3ace8906-6fda-48fe-8e46-4140e9ed7fce	e04284b9-b5a9-481b-b1bb-0377a566a154	114	47	107	2	89	39	50	0	0
PPP1R12C	54776	hgsc.bcm.edu;broad.mit.edu	37	19	55603617	55603617	+	Silent	SNP	G	G	C	novel		TCGA-AL-3468-01A-01D-1252-08	TCGA-AL-3468-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3ace8906-6fda-48fe-8e46-4140e9ed7fce	e04284b9-b5a9-481b-b1bb-0377a566a154	18	5	16	0	13	9	4	0	0
NLRP5	126206	broad.mit.edu;bcgsc.ca	37	19	56544099	56544099	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AL-3468-01A-01D-1252-08	TCGA-AL-3468-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3ace8906-6fda-48fe-8e46-4140e9ed7fce	e04284b9-b5a9-481b-b1bb-0377a566a154	147	56	139	0	0	0	0	0	0
ZNF17	7565	broad.mit.edu;bcgsc.ca	37	19	57931956	57931959	+	Frame_Shift_Del	DEL	TTCT	TTCT	-	novel		TCGA-AL-3468-01A-01D-1252-08	TCGA-AL-3468-10A-01D-1252-08	TTCT	TTCT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3ace8906-6fda-48fe-8e46-4140e9ed7fce	e04284b9-b5a9-481b-b1bb-0377a566a154	146	15	242	0	0	0	0	0	0
PRKCE	5581	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	46372319	46372319	+	Silent	SNP	T	T	C	novel		TCGA-AL-3468-01A-01D-1252-08	TCGA-AL-3468-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3ace8906-6fda-48fe-8e46-4140e9ed7fce	e04284b9-b5a9-481b-b1bb-0377a566a154	266	108	264	1	1	1	0	0	0
DCTN1	1639	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	74589259	74589259	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-AL-3468-01A-01D-1252-08	TCGA-AL-3468-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3ace8906-6fda-48fe-8e46-4140e9ed7fce	e04284b9-b5a9-481b-b1bb-0377a566a154	80	41	89	0	0	0	0	0	0
RGPD3	653489	broad.mit.edu;bcgsc.ca	37	2	107049613	107049613	+	Silent	SNP	A	A	G	novel		TCGA-AL-3468-01A-01D-1252-08	TCGA-AL-3468-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3ace8906-6fda-48fe-8e46-4140e9ed7fce	e04284b9-b5a9-481b-b1bb-0377a566a154	375	104	578	0	1	1	0	0	0
DPP10	57628	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	116598392	116598392	+	Missense_Mutation	SNP	C	C	A	rs201639501	alternate_allele	TCGA-AL-3468-01A-01D-1252-08	TCGA-AL-3468-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3ace8906-6fda-48fe-8e46-4140e9ed7fce	e04284b9-b5a9-481b-b1bb-0377a566a154	74	34	109	0	0	0	0	0	0
SMPD4	55627	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	130932501	130932501	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AL-3468-01A-01D-1252-08	TCGA-AL-3468-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3ace8906-6fda-48fe-8e46-4140e9ed7fce	e04284b9-b5a9-481b-b1bb-0377a566a154	269	17	382	1	20	16	4	0	0
ITGB6	3694	hgsc.bcm.edu;broad.mit.edu	37	2	160982928	160982928	+	Silent	SNP	T	T	C	novel		TCGA-AL-3468-01A-01D-1252-08	TCGA-AL-3468-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3ace8906-6fda-48fe-8e46-4140e9ed7fce	e04284b9-b5a9-481b-b1bb-0377a566a154	161	15	149	0	9	9	0	0	0
HSPD1	3329	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	198358118	198358118	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AL-3468-01A-01D-1252-08	TCGA-AL-3468-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3ace8906-6fda-48fe-8e46-4140e9ed7fce	e04284b9-b5a9-481b-b1bb-0377a566a154	179	74	290	2	330	146	184	0	0
ACADL	33	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	211081149	211081149	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AL-3468-01A-01D-1252-08	TCGA-AL-3468-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3ace8906-6fda-48fe-8e46-4140e9ed7fce	e04284b9-b5a9-481b-b1bb-0377a566a154	68	22	258	0	39	16	23	0	0
BARD1	580	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	215593624	215593624	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AL-3468-01A-01D-1252-08	TCGA-AL-3468-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3ace8906-6fda-48fe-8e46-4140e9ed7fce	e04284b9-b5a9-481b-b1bb-0377a566a154	59	36	107	0	1	0	1	0	0
STK25	10494	broad.mit.edu	37	2	242437690	242437690	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AL-3468-01A-01D-1252-08	TCGA-AL-3468-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3ace8906-6fda-48fe-8e46-4140e9ed7fce	e04284b9-b5a9-481b-b1bb-0377a566a154	226	10	224	0	58	54	4	0	0
FASTKD5	60493	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	3128940	3128940	+	Silent	SNP	A	A	G	novel		TCGA-AL-3468-01A-01D-1252-08	TCGA-AL-3468-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3ace8906-6fda-48fe-8e46-4140e9ed7fce	e04284b9-b5a9-481b-b1bb-0377a566a154	122	36	126	0	6	0	6	0	0
ZHX3	23051	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	39831715	39831715	+	Silent	SNP	G	G	T	novel		TCGA-AL-3468-01A-01D-1252-08	TCGA-AL-3468-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3ace8906-6fda-48fe-8e46-4140e9ed7fce	e04284b9-b5a9-481b-b1bb-0377a566a154	281	176	164	0	21	4	17	0	0
DSCAM	1826	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	21	41710196	41710196	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AL-3468-01A-01D-1252-08	TCGA-AL-3468-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3ace8906-6fda-48fe-8e46-4140e9ed7fce	e04284b9-b5a9-481b-b1bb-0377a566a154	103	80	235	0	0	0	0	0	0
AIFM3	150209	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	21330826	21330826	+	Silent	SNP	G	G	C	novel		TCGA-AL-3468-01A-01D-1252-08	TCGA-AL-3468-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3ace8906-6fda-48fe-8e46-4140e9ed7fce	e04284b9-b5a9-481b-b1bb-0377a566a154	81	37	52	1	0	0	0	0	0
IGLL5	100423062	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	23237695	23237695	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AL-3468-01A-01D-1252-08	TCGA-AL-3468-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3ace8906-6fda-48fe-8e46-4140e9ed7fce	e04284b9-b5a9-481b-b1bb-0377a566a154	54	21	48	0	14	14	0	0	0
BCRP3	644165	broad.mit.edu	37	22	25043021	25043021	+	RNA	SNP	C	C	G	novel		TCGA-AL-3468-01A-01D-1252-08	TCGA-AL-3468-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3ace8906-6fda-48fe-8e46-4140e9ed7fce	e04284b9-b5a9-481b-b1bb-0377a566a154	44	15	45	0	31	25	6	0	0
EIF4ENIF1	56478	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	31837941	31837941	+	Silent	SNP	T	T	C	novel		TCGA-AL-3468-01A-01D-1252-08	TCGA-AL-3468-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3ace8906-6fda-48fe-8e46-4140e9ed7fce	e04284b9-b5a9-481b-b1bb-0377a566a154	184	19	185	0	29	26	3	0	0
DEPDC5	9681	broad.mit.edu	37	22	32198798	32198798	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AL-3468-01A-01D-1252-08	TCGA-AL-3468-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3ace8906-6fda-48fe-8e46-4140e9ed7fce	e04284b9-b5a9-481b-b1bb-0377a566a154	211	5	233	0	3	3	0	0	0
POLDIP3	84271	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	22	42998037	42998037	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-AL-3468-01A-01D-1252-08	TCGA-AL-3468-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3ace8906-6fda-48fe-8e46-4140e9ed7fce	e04284b9-b5a9-481b-b1bb-0377a566a154	201	80	243	0	0	0	0	0	0
CELSR1	9620	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	22	46931045	46931045	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AL-3468-01A-01D-1252-08	TCGA-AL-3468-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3ace8906-6fda-48fe-8e46-4140e9ed7fce	e04284b9-b5a9-481b-b1bb-0377a566a154	43	13	26	0	4	1	3	0	0
LMF2	91289	broad.mit.edu	37	22	50941823	50941823	+	Silent	SNP	C	C	T	novel		TCGA-AL-3468-01A-01D-1252-08	TCGA-AL-3468-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3ace8906-6fda-48fe-8e46-4140e9ed7fce	e04284b9-b5a9-481b-b1bb-0377a566a154	39	5	49	0	52	47	5	0	0
BHLHE40	8553	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	5024904	5024904	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AL-3468-01A-01D-1252-08	TCGA-AL-3468-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3ace8906-6fda-48fe-8e46-4140e9ed7fce	e04284b9-b5a9-481b-b1bb-0377a566a154	146	92	98	0	189	67	122	0	0
SLC6A6	6533	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	14508150	14508150	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AL-3468-01A-01D-1252-08	TCGA-AL-3468-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3ace8906-6fda-48fe-8e46-4140e9ed7fce	e04284b9-b5a9-481b-b1bb-0377a566a154	191	115	121	0	2	0	2	0	0
BAP1	8314	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	52441417	52441417	+	Silent	SNP	G	G	C	novel		TCGA-AL-3468-01A-01D-1252-08	TCGA-AL-3468-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3ace8906-6fda-48fe-8e46-4140e9ed7fce	e04284b9-b5a9-481b-b1bb-0377a566a154	235	68	191	0	0	0	0	0	0
PDZRN3	23024	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	73432828	73432828	+	Silent	SNP	C	C	T	novel		TCGA-AL-3468-01A-01D-1252-08	TCGA-AL-3468-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3ace8906-6fda-48fe-8e46-4140e9ed7fce	e04284b9-b5a9-481b-b1bb-0377a566a154	278	79	147	0	15	9	6	0	0
ROBO1	6091	hgsc.bcm.edu	37	3	78717063	78717063	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AL-3468-01A-01D-1252-08	TCGA-AL-3468-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3ace8906-6fda-48fe-8e46-4140e9ed7fce	e04284b9-b5a9-481b-b1bb-0377a566a154	55	3	90	0	0	0	0	0	0
SLC2A2	6514	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	170732492	170732492	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AL-3468-01A-01D-1252-08	TCGA-AL-3468-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3ace8906-6fda-48fe-8e46-4140e9ed7fce	e04284b9-b5a9-481b-b1bb-0377a566a154	201	53	238	0	16	13	3	0	0
EIF2B5	8893	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	183861938	183861938	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AL-3468-01A-01D-1252-08	TCGA-AL-3468-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3ace8906-6fda-48fe-8e46-4140e9ed7fce	e04284b9-b5a9-481b-b1bb-0377a566a154	515	142	410	1	83	59	24	0	0
MUC4	4585	broad.mit.edu	37	3	195505813	195505813	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AL-3468-01A-01D-1252-08	TCGA-AL-3468-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3ace8906-6fda-48fe-8e46-4140e9ed7fce	e04284b9-b5a9-481b-b1bb-0377a566a154	36	4	12	0	1	1	0	0	0
CD180	4064	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	66479676	66479676	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AL-3468-01A-01D-1252-08	TCGA-AL-3468-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3ace8906-6fda-48fe-8e46-4140e9ed7fce	e04284b9-b5a9-481b-b1bb-0377a566a154	210	89	286	1	1	1	0	0	0
PCDHB1	29930	broad.mit.edu	37	5	140433403	140433403	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AL-3468-01A-01D-1252-08	TCGA-AL-3468-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3ace8906-6fda-48fe-8e46-4140e9ed7fce	e04284b9-b5a9-481b-b1bb-0377a566a154	156	4	207	0	0	0	0	0	0
SPINK5	11005	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	5	147505159	147505159	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AL-3468-01A-01D-1252-08	TCGA-AL-3468-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3ace8906-6fda-48fe-8e46-4140e9ed7fce	e04284b9-b5a9-481b-b1bb-0377a566a154	57	27	100	0	0	0	0	0	0
SLC6A7	6534	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	149580661	149580661	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AL-3468-01A-01D-1252-08	TCGA-AL-3468-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3ace8906-6fda-48fe-8e46-4140e9ed7fce	e04284b9-b5a9-481b-b1bb-0377a566a154	108	47	153	1	0	0	0	0	0
WWC1	23286	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	167836950	167836950	+	Silent	SNP	G	G	A	novel		TCGA-AL-3468-01A-01D-1252-08	TCGA-AL-3468-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3ace8906-6fda-48fe-8e46-4140e9ed7fce	e04284b9-b5a9-481b-b1bb-0377a566a154	171	83	177	1	34	17	17	0	0
PRELID1	27166	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	5	176733459	176733459	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AL-3468-01A-01D-1252-08	TCGA-AL-3468-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3ace8906-6fda-48fe-8e46-4140e9ed7fce	e04284b9-b5a9-481b-b1bb-0377a566a154	31	10	49	1	224	139	83	2	0
OR2J3	442186	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	29080474	29080475	+	Frame_Shift_Del	DEL	TT	TT	-	novel		TCGA-AL-3468-01A-01D-1252-08	TCGA-AL-3468-10A-01D-1252-08	TT	TT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3ace8906-6fda-48fe-8e46-4140e9ed7fce	e04284b9-b5a9-481b-b1bb-0377a566a154	89	79	216	0	0	0	0	0	0
FLOT1	10211	hgsc.bcm.edu	37	6	30697875	30697875	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AL-3468-01A-01D-1252-08	TCGA-AL-3468-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3ace8906-6fda-48fe-8e46-4140e9ed7fce	e04284b9-b5a9-481b-b1bb-0377a566a154	120	7	146	2	314	314	0	0	0
MSH5	4439	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	31712029	31712029	+	Silent	SNP	A	A	G	novel		TCGA-AL-3468-01A-01D-1252-08	TCGA-AL-3468-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3ace8906-6fda-48fe-8e46-4140e9ed7fce	e04284b9-b5a9-481b-b1bb-0377a566a154	195	63	211	0	28	12	16	0	0
LRRC1	55227	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	53787458	53787458	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AL-3468-01A-01D-1252-08	TCGA-AL-3468-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3ace8906-6fda-48fe-8e46-4140e9ed7fce	e04284b9-b5a9-481b-b1bb-0377a566a154	214	189	237	0	9	0	9	0	0
BAI3	577	hgsc.bcm.edu	37	6	69759168	69759168	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-AL-3468-01A-01D-1252-08	TCGA-AL-3468-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3ace8906-6fda-48fe-8e46-4140e9ed7fce	e04284b9-b5a9-481b-b1bb-0377a566a154	27	2	112	0	0	0	0	0	0
SDK1	221935	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	4153049	4153049	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-AL-3468-01A-01D-1252-08	TCGA-AL-3468-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3ace8906-6fda-48fe-8e46-4140e9ed7fce	e04284b9-b5a9-481b-b1bb-0377a566a154	619	41	291	2	3	3	0	0	0
ARL4A	10124	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	12728407	12728407	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-AL-3468-01A-01D-1252-08	TCGA-AL-3468-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3ace8906-6fda-48fe-8e46-4140e9ed7fce	e04284b9-b5a9-481b-b1bb-0377a566a154	168	70	197	0	13	10	3	0	0
CAMK2B	816	hgsc.bcm.edu;broad.mit.edu	37	7	44259810	44259810	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AL-3468-01A-01D-1252-08	TCGA-AL-3468-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3ace8906-6fda-48fe-8e46-4140e9ed7fce	e04284b9-b5a9-481b-b1bb-0377a566a154	76	8	45	0	13	12	1	0	0
LANCL2	55915	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	55459595	55459595	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-AL-3468-01A-01D-1252-08	TCGA-AL-3468-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3ace8906-6fda-48fe-8e46-4140e9ed7fce	e04284b9-b5a9-481b-b1bb-0377a566a154	214	34	142	0	1	1	0	0	0
GTF2IRD2	84163	broad.mit.edu	37	7	74212378	74212378	+	Silent	SNP	T	T	C	novel		TCGA-AL-3468-01A-01D-1252-08	TCGA-AL-3468-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3ace8906-6fda-48fe-8e46-4140e9ed7fce	e04284b9-b5a9-481b-b1bb-0377a566a154	628	4	360	0	12	12	0	0	0
ABCB1	5243	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	87148688	87148688	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AL-3468-01A-01D-1252-08	TCGA-AL-3468-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3ace8906-6fda-48fe-8e46-4140e9ed7fce	e04284b9-b5a9-481b-b1bb-0377a566a154	104	40	140	0	78	34	44	0	0
ASB4	51666	broad.mit.edu	37	7	95157443	95157443	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AL-3468-01A-01D-1252-08	TCGA-AL-3468-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3ace8906-6fda-48fe-8e46-4140e9ed7fce	e04284b9-b5a9-481b-b1bb-0377a566a154	127	5	60	0	0	0	0	0	0
SLC12A9	56996	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	100463708	100463708	+	Silent	SNP	T	T	C	novel		TCGA-AL-3468-01A-01D-1252-08	TCGA-AL-3468-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3ace8906-6fda-48fe-8e46-4140e9ed7fce	e04284b9-b5a9-481b-b1bb-0377a566a154	783	361	401	2	28	17	11	0	0
LMOD2	442721	hgsc.bcm.edu	37	7	123302930	123302930	+	Silent	SNP	T	T	C	novel		TCGA-AL-3468-01A-01D-1252-08	TCGA-AL-3468-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3ace8906-6fda-48fe-8e46-4140e9ed7fce	e04284b9-b5a9-481b-b1bb-0377a566a154	34	3	15	1	0	0	0	0	0
CALD1	800	hgsc.bcm.edu	37	7	134618538	134618538	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AL-3468-01A-01D-1252-08	TCGA-AL-3468-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3ace8906-6fda-48fe-8e46-4140e9ed7fce	e04284b9-b5a9-481b-b1bb-0377a566a154	31	2	14	0	29	25	4	0	0
PRSS55	203074	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	10396268	10396268	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AL-3468-01A-01D-1252-08	TCGA-AL-3468-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3ace8906-6fda-48fe-8e46-4140e9ed7fce	e04284b9-b5a9-481b-b1bb-0377a566a154	436	166	465	2	0	0	0	0	0
TMEM67	91147	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	94792858	94792858	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AL-3468-01A-01D-1252-08	TCGA-AL-3468-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3ace8906-6fda-48fe-8e46-4140e9ed7fce	e04284b9-b5a9-481b-b1bb-0377a566a154	291	134	444	1	3	3	0	0	0
KCNS2	3788	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	99441466	99441466	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-AL-3468-01A-01D-1252-08	TCGA-AL-3468-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3ace8906-6fda-48fe-8e46-4140e9ed7fce	e04284b9-b5a9-481b-b1bb-0377a566a154	271	114	273	0	0	0	0	0	0
ZNF658	26149	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	40774146	40774146	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AL-3468-01A-01D-1252-08	TCGA-AL-3468-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3ace8906-6fda-48fe-8e46-4140e9ed7fce	e04284b9-b5a9-481b-b1bb-0377a566a154	251	105	701	0	1	0	1	0	0
SPATA31D1	389763	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	9	84609703	84609703	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-AL-3468-01A-01D-1252-08	TCGA-AL-3468-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3ace8906-6fda-48fe-8e46-4140e9ed7fce	e04284b9-b5a9-481b-b1bb-0377a566a154	85	29	87	0	0	0	0	0	0
SVEP1	79987	broad.mit.edu;bcgsc.ca	37	9	113234604	113234615	+	Splice_Site	DEL	CTGGATAGTCGG	CTGGATAGTCGG	-	novel		TCGA-AL-3468-01A-01D-1252-08	TCGA-AL-3468-10A-01D-1252-08	CTGGATAGTCGG	CTGGATAGTCGG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3ace8906-6fda-48fe-8e46-4140e9ed7fce	e04284b9-b5a9-481b-b1bb-0377a566a154	55	17	118	0	0	0	0	0	0
WDR34	89891	hgsc.bcm.edu	37	9	131397941	131397941	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-AL-3468-01A-01D-1252-08	TCGA-AL-3468-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3ace8906-6fda-48fe-8e46-4140e9ed7fce	e04284b9-b5a9-481b-b1bb-0377a566a154	39	2	20	0	8	8	0	0	0
COL5A1	1289	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	137714852	137714852	+	Silent	SNP	T	T	C	novel		TCGA-AL-3468-01A-01D-1252-08	TCGA-AL-3468-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3ace8906-6fda-48fe-8e46-4140e9ed7fce	e04284b9-b5a9-481b-b1bb-0377a566a154	61	12	53	0	0	0	0	0	0
ND1	10625	bcgsc.ca	37	MT	3890	3890	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AL-3468-01A-01D-1252-08	TCGA-AL-3468-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3ace8906-6fda-48fe-8e46-4140e9ed7fce	e04284b9-b5a9-481b-b1bb-0377a566a154	108	102	10	0	9907	145	9760	1	1
MBTPS2	51360	hgsc.bcm.edu;broad.mit.edu	37	X	21857904	21857904	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AL-3468-01A-01D-1252-08	TCGA-AL-3468-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3ace8906-6fda-48fe-8e46-4140e9ed7fce	e04284b9-b5a9-481b-b1bb-0377a566a154	5	5	9	0	0	0	0	0	0
SPIN3	169981	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	X	57021007	57021007	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-AL-3468-01A-01D-1252-08	TCGA-AL-3468-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3ace8906-6fda-48fe-8e46-4140e9ed7fce	e04284b9-b5a9-481b-b1bb-0377a566a154	217	11	287	0	4	4	0	0	0
TAF9B	51616	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	77387232	77387232	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AL-3468-01A-01D-1252-08	TCGA-AL-3468-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3ace8906-6fda-48fe-8e46-4140e9ed7fce	e04284b9-b5a9-481b-b1bb-0377a566a154	100	32	176	1	14	9	5	0	0
BPNT1	10380	broad.mit.edu;bcgsc.ca	37	1	220232228	220232229	+	Frame_Shift_Ins	INS	-	-	GCATA	novel		TCGA-AL-3468-01A-01D-1252-08	TCGA-AL-3468-10A-01D-1252-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3ace8906-6fda-48fe-8e46-4140e9ed7fce	e04284b9-b5a9-481b-b1bb-0377a566a154	284	29	390	0	0	0	0	0	0
NXF1	10482	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	62567920	62567921	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-AL-3468-01A-01D-1252-08	TCGA-AL-3468-10A-01D-1252-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3ace8906-6fda-48fe-8e46-4140e9ed7fce	e04284b9-b5a9-481b-b1bb-0377a566a154	87	23	95	0	0	0	0	0	0
NR2F2	7026	hgsc.bcm.edu;broad.mit.edu	37	15	96875754	96875755	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-AL-3468-01A-01D-1252-08	TCGA-AL-3468-10A-01D-1252-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3ace8906-6fda-48fe-8e46-4140e9ed7fce	e04284b9-b5a9-481b-b1bb-0377a566a154	87	23	72	0	0	0	0	0	0
PCSK2	5126	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	20	17207956	17207957	+	In_Frame_Ins	INS	-	-	GGT	novel		TCGA-AL-3468-01A-01D-1252-08	TCGA-AL-3468-10A-01D-1252-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3ace8906-6fda-48fe-8e46-4140e9ed7fce	e04284b9-b5a9-481b-b1bb-0377a566a154	218	92	193	0	0	0	0	0	0
FRG2B	441581	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	135440204	135440205	+	Missense_Mutation	DNP	TG	TG	CA	novel		TCGA-AL-3468-01A-01D-1252-08	TCGA-AL-3468-10A-01D-1252-08	TG	TG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3ace8906-6fda-48fe-8e46-4140e9ed7fce	e04284b9-b5a9-481b-b1bb-0377a566a154	657	127	719	0	0	0	0	0	0
EIF4G3	8672	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	21276537	21276538	+	Missense_Mutation	DNP	GC	GC	AA	novel		TCGA-AL-3468-01A-01D-1252-08	TCGA-AL-3468-10A-01D-1252-08	GC	GC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3ace8906-6fda-48fe-8e46-4140e9ed7fce	e04284b9-b5a9-481b-b1bb-0377a566a154	47	8	65	1	0	0	0	0	0
