Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	TTotCov	TVarCov	NTotCov	NVarCov	Trna_tot	Trna_ref	Trna_var	Trna_alt1	Trna_alt2
FAM132A	388581	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	1179848	1179848	+	Silent	SNP	G	G	C	rs200735866	alternate_allele	TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	90	18	104	0	0	0	0	0	0
TTC34	100287898	bcgsc.ca	37	1	2700302	2700302	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	298	15	286	1	0	0	0	0	0
KCNAB2	8514	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	6142274	6142274	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	80	29	97	0	0	0	0	0	0
CASZ1	54897	broad.mit.edu	37	1	10699156	10699158	+	In_Frame_Del	DEL	TCG	TCG	-	rs201089181	alternate_allele	TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	TCG	TCG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	6	2	28	0	0	0	0	0	0
SPEN	23013	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	16258337	16258337	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	67	48	81	0	4	1	3	0	0
RCAN3	11123	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	24840954	24840954	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	264	121	325	0	0	0	0	0	0
DNALI1	7802	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	38027791	38027793	+	In_Frame_Del	DEL	AGA	AGA	-	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	AGA	AGA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	110	56	119	0	0	0	0	0	0
EFCAB14	9813	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	47144193	47144194	+	Frame_Shift_Del	DEL	AA	AA	-	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	AA	AA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	56	21	89	0	0	0	0	0	0
SLC44A3	126969	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	95360468	95360468	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	294	58	295	0	53	38	15	0	0
ATXN7L2	127002	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	110029635	110029635	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	130	17	124	0	0	0	0	0	0
CTTNBP2NL	55917	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	112999419	112999419	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	142	88	120	0	0	0	0	0	0
CELF3	11189	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	151688462	151688462	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	145	95	139	1	0	0	0	0	0
MRPL24	79590	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	156707893	156707893	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	371	70	344	1	156	122	34	0	0
AXDND1	126859	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	179460842	179460842	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	309	52	309	0	0	0	0	0	0
ZNF648	127665	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	182026912	182026918	+	Frame_Shift_Del	DEL	TTCCTCT	TTCCTCT	-	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	TTCCTCT	TTCCTCT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	160	31	121	0	0	0	0	0	0
ZNF281	23528	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	200376815	200376815	+	Silent	SNP	T	T	C	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	66	13	53	0	1	1	0	0	0
TSNAX-DISC1	0	bcgsc.ca	37	1	232099383	232099383	+	RNA	SNP	T	T	G	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	154	88	139	0	0	0	0	0	0
MSS51	118490	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	75187422	75187422	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	83	43	110	0	0	0	0	0	0
FUT11	170384	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	75533456	75533456	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	98	50	128	0	5	4	1	0	0
KAT6B	23522	broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	76781667	76781667	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	79	29	106	1	0	0	0	0	0
GRID1	2894	broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	87484287	87484287	+	Silent	SNP	T	T	G	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	36	5	40	0	3	3	0	0	0
SUFU	51684	broad.mit.edu	37	10	104263976	104263982	+	Frame_Shift_Del	DEL	CCCCCGG	CCCCCGG	-	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	CCCCCGG	CCCCCGG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	12	10	12	0	0	0	0	0	0
PDCD11	22984	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	105205187	105205189	+	In_Frame_Del	DEL	TTC	TTC	-	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	TTC	TTC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	209	56	218	0	0	0	0	0	0
MUC2	4583	broad.mit.edu	37	11	1093326	1093326	+	Silent	SNP	C	C	A	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	82	4	81	0	0	0	0	0	0
DCHS1	8642	broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	6654032	6654032	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	233	108	189	1	1	1	0	0	0
FBXO3	26273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	33770331	33770331	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	51	14	50	0	0	0	0	0	0
CD6	923	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	60778597	60778605	+	In_Frame_Del	DEL	AGTCACTAT	AGTCACTAT	-	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	AGTCACTAT	AGTCACTAT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	171	38	230	0	0	0	0	0	0
HNRNPUL2	221092	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	62491416	62491416	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	157	95	215	0	0	0	0	0	0
PPP2R5B	5526	hgsc.bcm.edu	37	11	64694184	64694184	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	35	6	44	0	0	0	0	0	0
HEPHL1	341208	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	93797512	93797529	+	In_Frame_Del	DEL	ATTCAGGGACACGGAATG	ATTCAGGGACACGGAATG	-	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	ATTCAGGGACACGGAATG	ATTCAGGGACACGGAATG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	72	18	141	0	0	0	0	0	0
C11orf93	120376	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	111179020	111179020	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	62	5	125	0	2	2	0	0	0
PHLDB1	23187	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	118509935	118509935	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	95	77	169	1	31	8	23	0	0
CACNA2D4	93589	broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	1902856	1902856	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	150	46	165	1	0	0	0	0	0
DDX12P	440081	ucsc.edu	37	12	9578146	9578146	+	RNA	SNP	G	G	A	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	329	6	245	4	3	3	0	0	0
C2CD5	9847	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	12	22670928	22670928	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	85	36	70	0	0	0	0	0	0
KIF21A	55605	broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	39726729	39726729	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	179	72	155	1	8	4	4	0	0
ARID2	196528	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	46205220	46205221	+	Frame_Shift_Del	DEL	AA	AA	-	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	AA	AA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	82	33	85	0	0	0	0	0	0
PRPH	5630	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	49690229	49690229	+	Silent	SNP	C	C	T	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	151	9	168	0	1	1	0	0	0
KCNH3	23416	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	49951017	49951018	+	Frame_Shift_Del	DEL	AC	AC	-	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	AC	AC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	126	51	131	0	0	0	0	0	0
KRT85	3891	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	52754642	52754642	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	68	29	77	0	0	0	0	0	0
PTPRB	5787	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	70932007	70932007	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	184	74	145	0	0	0	0	0	0
TMCC3	57458	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	94965249	94965249	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	139	66	176	0	1	1	0	0	0
CCDC42B	387885	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	113593105	113593106	+	Frame_Shift_Del	DEL	AG	AG	-	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	AG	AG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	80	35	62	0	0	0	0	0	0
PXN	5829	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	120653013	120653013	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	68	28	84	0	0	0	0	0	0
BRCA2	675	broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	32912283	32912283	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	16	7	20	0	0	0	0	0	0
ABCC4	10257	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	95840715	95840715	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	112	23	140	0	0	0	0	0	0
DOCK9	23348	broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	99449739	99449739	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	116	18	122	0	0	0	0	0	0
ACIN1	22985	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	23549484	23549484	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	239	111	222	0	1	1	0	0	0
SAMD4A	23034	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	55203876	55203876	+	Missense_Mutation	SNP	C	C	T	rs138744574	byfrequency;alternate_allele	TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	130	52	140	0	0	0	0	0	0
SYNE2	23224	broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	64522891	64522891	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	132	59	144	1	2	2	0	0	0
SYNE2	23224	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	64610587	64610587	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	169	88	216	1	2	2	0	0	0
MTHFD1	4522	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	64924942	64924942	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	57	24	67	0	3	2	1	0	0
RDH11	51109	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	68159767	68159767	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	93	35	96	0	0	0	0	0	0
FLVCR2	55640	broad.mit.edu;bcgsc.ca	37	14	76107380	76107380	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	227	7	200	0	3	3	0	0	0
WDR20	91833	broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	102675669	102675669	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	155	59	166	1	2	1	1	0	0
C15orf41	84529	broad.mit.edu;bcgsc.ca	37	15	37002072	37002072	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	131	59	131	2	1	0	1	0	0
NUSAP1	51203	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	41657726	41657726	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	88	32	72	0	4	3	1	0	0
TP53BP1	7158	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	43771711	43771711	+	Silent	SNP	T	T	C	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	287	103	270	0	0	0	0	0	0
CATSPER2	117155	broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	43940128	43940128	+	Silent	SNP	G	G	A	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	454	183	486	2	1	1	0	0	0
DAPK2	23604	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	64204316	64204316	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	64	38	47	0	0	0	0	0	0
SENP8	123228	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	72432461	72432461	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	33	10	33	0	1	1	0	0	0
PARP6	56965	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	72543559	72543559	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	100	48	90	0	0	0	0	0	0
LOC100506874	0	broad.mit.edu;bcgsc.ca	37	15	85121409	85121409	+	RNA	DEL	T	T	-	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	44	20	24	0	0	0	0	0	0
FANCI	55215	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	15	89801970	89801970	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	102	46	82	0	0	0	0	0	0
OR4F6	390648	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	102346642	102346642	+	Silent	SNP	G	G	T	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	124	42	180	0	0	0	0	0	0
ABCC6P1	653190	bcgsc.ca	37	16	18593963	18593963	+	RNA	SNP	C	C	T	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	130	51	103	2	0	0	0	0	0
PLK1	5347	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	23690422	23690422	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	157	60	98	0	8	5	3	0	0
LONP2	83752	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	48311386	48311386	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	188	63	123	0	0	0	0	0	0
MINK1	50488	broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	4789856	4789856	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	118	37	136	1	7	4	3	0	0
GUCY2D	3000	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	7910749	7910749	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	88	6	90	0	0	0	0	0	0
MAP2K3	5606	broad.mit.edu;bcgsc.ca	37	17	21208389	21208389	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	131	19	126	2	35	35	0	0	0
FLJ36000	0	bcgsc.ca	37	17	21904833	21904833	+	RNA	SNP	C	C	A	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	157	7	145	2	0	0	0	0	0
SGK494	0	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	26938587	26938587	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	116	39	89	0	2	2	0	0	0
EFCAB5	374786	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	28296149	28296149	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	118	52	162	0	0	0	0	0	0
LRRC37BP1	147172	broad.mit.edu;bcgsc.ca	37	17	28961122	28961122	+	RNA	SNP	G	G	A	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	43	18	44	0	5	4	1	0	0
LRRC37B	114659	hgsc.bcm.edu;bcgsc.ca	37	17	30349520	30349520	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	268	45	231	0	0	0	0	0	0
PTRF	284119	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	40557359	40557359	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	20	4	16	0	47	37	10	0	0
MBTD1	54799	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	49302371	49302371	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	86	26	100	0	0	0	0	0	0
AKAP1	8165	ucsc.edu;bcgsc.ca	37	17	55197616	55197616	+	Silent	SNP	G	G	A	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	215	71	233	2	1	0	1	0	0
BZRAP1	9256	broad.mit.edu;bcgsc.ca	37	17	56382447	56382447	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	151	6	136	0	0	0	0	0	0
MED13	9969	broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	60042511	60042511	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	252	98	246	1	3	2	1	0	0
KCNH6	81033	broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	61623068	61623068	+	Silent	SNP	A	A	G	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	123	51	112	1	7	3	4	0	0
NAT9	26151	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	72768142	72768142	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	126	54	108	0	25	11	14	0	0
CARD14	79092	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	78166392	78166392	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	203	43	210	0	0	0	0	0	0
NPTX1	4884	hgsc.bcm.edu;bcgsc.ca	37	17	78449367	78449367	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	130	55	98	0	0	0	0	0	0
DSG3	1830	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	29038453	29038453	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	108	56	102	0	0	0	0	0	0
ABCA7	10347	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	1059069	1059069	+	Silent	SNP	G	G	T	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	118	28	116	0	38	12	26	0	0
MFSD12	126321	broad.mit.edu;bcgsc.ca	37	19	3546268	3546268	+	Silent	SNP	G	G	A	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	13	4	32	0	124	102	21	1	0
LOC100128568	0	bcgsc.ca	37	19	6002054	6002054	+	RNA	SNP	C	C	T	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	25	4	66	0	0	0	0	0	0
ZNF799	90576	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	12502558	12502558	+	Silent	SNP	C	C	T	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	99	39	160	1	0	0	0	0	0
CD97	976	hgsc.bcm.edu;broad.mit.edu	37	19	14517156	14517156	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	28	15	18	0	22	11	11	0	0
EPS15L1	58513	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	16548668	16548669	+	Frame_Shift_Del	DEL	AT	AT	-	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	AT	AT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	113	34	103	0	0	0	0	0	0
IFI30	10437	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	18288015	18288015	+	Silent	SNP	C	C	T	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	160	34	215	0	67	54	13	0	0
ZNF507	22847	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	32873421	32873421	+	Silent	SNP	T	T	A	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	202	106	203	2	5	2	3	0	0
CEACAM20	125931	broad.mit.edu;bcgsc.ca	37	19	45016957	45016957	+	Silent	SNP	C	C	T	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	204	7	206	0	0	0	0	0	0
FAM83E	54854	broad.mit.edu	37	19	49114033	49114033	+	Silent	SNP	G	G	A	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	180	6	191	0	6	6	0	0	0
ZNF814	730051	hgsc.bcm.edu	37	19	58385790	58385790	+	Missense_Mutation	SNP	G	G	T	rs111727691		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	131	13	108	0	2	2	0	0	0
ZNF814	730051	hgsc.bcm.edu	37	19	58385793	58385793	+	Missense_Mutation	SNP	C	C	T	rs113623532		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	122	12	103	0	1	1	0	0	0
HS1BP3	64342	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	20818857	20818857	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	210	93	153	0	149	84	65	0	0
CCDC121	79635	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	27850548	27850548	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	129	39	125	0	1	0	1	0	0
ALK	238	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	29420473	29420473	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	82	37	74	0	0	0	0	0	0
LOC285033	0	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	96906416	96906416	+	RNA	SNP	C	C	A	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	44	14	32	0	0	0	0	0	0
RGPD3	653489	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	107073432	107073432	+	Silent	SNP	G	G	A	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	384	132	342	0	0	0	0	0	0
RABL2A	11159	broad.mit.edu	37	2	114391751	114391751	+	Silent	SNP	G	G	A	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	215	7	181	0	34	33	1	0	0
SCN2A	6326	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	166153545	166153545	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	200	105	174	0	0	0	0	0	0
LRP2	4036	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	170055306	170055306	+	Silent	SNP	A	A	G	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	149	49	119	0	0	0	0	0	0
PGAP1	80055	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	197784853	197784853	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	56	28	43	0	0	0	0	0	0
COL6A3	1293	broad.mit.edu;bcgsc.ca	37	2	238275565	238275565	+	Silent	SNP	C	C	T	rs140699766		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	266	10	196	1	3	3	0	0	0
FARP2	9855	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	242407764	242407764	+	Silent	SNP	C	C	G	rs138469271	alternate_allele	TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	93	36	89	0	1	0	1	0	0
FAM182A	284800	broad.mit.edu	37	20	26061816	26061816	+	RNA	SNP	C	C	A	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	140	22	123	0	0	0	0	0	0
FRG1B	284802	bcgsc.ca	37	20	29625947	29625947	+	RNA	SNP	T	T	C	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	157	10	188	6	14	14	0	0	0
CHD6	84181	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	40143495	40143495	+	Silent	SNP	C	C	A	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	99	38	92	0	3	0	3	0	0
MYBL2	4605	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	42328636	42328636	+	Silent	SNP	C	C	T	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	82	34	92	0	0	0	0	0	0
WFDC8	90199	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	44181865	44181865	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	131	51	147	0	0	0	0	0	0
BCAS4	55653	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	49458324	49458324	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	250	109	333	0	9	6	3	0	0
NTSR1	4923	broad.mit.edu;bcgsc.ca	37	20	61389632	61389632	+	Missense_Mutation	SNP	G	G	A	rs201489051		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	201	10	149	0	0	0	0	0	0
URB1	9875	bcgsc.ca	37	21	33757860	33757860	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	77	32	98	2	0	0	0	0	0
POTEH	23784	broad.mit.edu;bcgsc.ca	37	22	16266950	16266950	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	1342	145	1499	1	0	0	0	0	0
CECR2	27443	broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	18029082	18029082	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	62	30	63	0	1	0	1	0	0
ZDHHC8	29801	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	22	20128194	20128194	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	32	16	40	0	7	7	0	0	0
C22orf42	150297	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	22	32555017	32555019	+	In_Frame_Del	DEL	CTG	CTG	-	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	CTG	CTG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	274	49	290	0	0	0	0	0	0
MKRN2	23609	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	12611673	12611673	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	83	77	76	0	2	0	2	0	0
RPSA	3921	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	39453553	39453556	+	Splice_Site	DEL	GTAT	GTAT	-	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	GTAT	GTAT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	23	17	39	0	0	0	0	0	0
POC1A	25886	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	52181040	52181040	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	127	32	150	0	0	0	0	0	0
PBRM1	55193	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	52637647	52637647	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	32	28	23	0	2	1	1	0	0
SLMAP	7871	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	57743531	57743531	+	Silent	SNP	A	A	G	rs147270008		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	282	236	317	2	0	0	0	0	0
THPO	7066	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	184090635	184090635	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	150	49	126	0	0	0	0	0	0
EIF4A2	1974	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	186503770	186503770	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	149	34	121	0	39	32	7	0	0
SDHAP2	727956	ucsc.edu	37	3	195400728	195400728	+	RNA	SNP	A	A	G	rs77981248		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	34	15	172	4	126	0	125	1	0
MUC4	4585	bcgsc.ca	37	3	195505787	195505787	+	Missense_Mutation	SNP	C	C	T	rs11915935		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	376	41	387	16	1	1	0	0	0
MUC4	4585	bcgsc.ca	37	3	195507744	195507744	+	Silent	SNP	A	A	C	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	81	32	224	16	2	2	0	0	0
MUC4	4585	bcgsc.ca	37	3	195507851	195507851	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	117	35	516	18	0	0	0	0	0
MUC4	4585	bcgsc.ca	37	3	195511874	195511874	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	682	19	541	7	0	0	0	0	0
SLC30A9	10463	bcgsc.ca	37	4	42051440	42051440	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	68	4	88	0	3	3	0	0	0
TMPRSS11A	339967	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	68777111	68777111	+	Nonsense_Mutation	DEL	G	G	-	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	163	70	206	0	0	0	0	0	0
TMPRSS11A	339967	hgsc.bcm.edu	37	4	68777111	68777112	+	Frame_Shift_Del	DEL	GT	GT	-	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	GT	GT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	165	48	207	0	0	0	0	0	0
TMPRSS11A	339967	bcgsc.ca	37	4	68777112	68777112	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	163	70	205	0	0	0	0	0	0
ZNF622	90441	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	16465479	16465479	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	155	31	148	0	22	16	6	0	0
MYO10	4651	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	16685914	16685914	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	56	24	60	0	4	2	2	0	0
CDH9	1007	broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	26915851	26915851	+	Missense_Mutation	SNP	C	C	T	rs150604531		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	112	37	112	1	0	0	0	0	0
GDNF	2668	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	37834925	37834925	+	Splice_Site	SNP	C	C	A	rs13169425		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	48	19	82	0	0	0	0	0	0
PRRC1	133619	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	126860514	126860514	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	182	83	145	0	4	3	1	0	0
MATR3	9782	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	138643239	138643239	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	198	84	210	0	6	3	3	0	0
PCDHB13	56123	broad.mit.edu	37	5	140595249	140595249	+	Silent	SNP	T	T	C	rs144959109	byfrequency;alternate_allele	TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	89	3	123	1	0	0	0	0	0
GRPEL2	134266	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	148730494	148730494	+	Silent	SNP	C	C	T	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	81	20	69	0	0	0	0	0	0
DSP	1832	hgsc.bcm.edu;bcgsc.ca	37	6	7562996	7562996	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	103	29	113	0	0	0	0	0	0
SLC17A3	10786	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	25850278	25850278	+	Nonsense_Mutation	DEL	A	A	-	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	99	41	95	0	0	0	0	0	0
MDC1	9656	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	30681013	30681013	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	126	7	126	0	3	3	0	0	0
TCP11	6954	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	35086064	35086064	+	Silent	SNP	T	T	G	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	202	87	179	0	0	0	0	0	0
KLC4	89953	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	43041648	43041648	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	128	40	149	0	2	2	0	0	0
YIPF3	25844	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	43480515	43480515	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	189	75	165	0	101	66	35	0	0
SNAP91	9892	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	84371294	84371294	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	100	59	95	0	0	0	0	0	0
SPACA1	81833	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	88775941	88775941	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	39	14	67	0	0	0	0	0	0
MDN1	23195	broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	90402313	90402313	+	Nonsense_Mutation	SNP	G	G	C	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	208	44	180	1	0	0	0	0	0
HACE1	57531	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	105298839	105298839	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	105	61	128	0	0	0	0	0	0
SOBP	55084	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	107827527	107827527	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	89	16	96	0	0	0	0	0	0
NUS1	116150	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	118015319	118015319	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	87	50	125	0	3	2	1	0	0
GPR126	57211	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	142691578	142691578	+	Silent	SNP	C	C	T	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	38	8	65	0	0	0	0	0	0
ARID1B	57492	broad.mit.edu	37	6	157099342	157099342	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	6	2	21	0	0	0	0	0	0
IGF2R	3482	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	160445676	160445676	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	172	47	198	0	0	0	0	0	0
CARD11	84433	broad.mit.edu	37	7	2959068	2959068	+	Silent	SNP	G	G	A	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	290	8	226	0	2	2	0	0	0
LOC646762	0	bcgsc.ca	37	7	29696996	29696997	+	RNA	DEL	AC	AC	-	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	AC	AC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	102	41	128	1	0	0	0	0	0
CCDC129	223075	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	31682718	31682718	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	138	61	136	0	0	0	0	0	0
HERPUD2	64224	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	35733937	35733937	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	166	62	156	0	5	3	2	0	0
PKD1L1	168507	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	47853600	47853600	+	Missense_Mutation	SNP	C	C	T	rs147316882		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	51	26	39	0	0	0	0	0	0
VWC2	375567	hgsc.bcm.edu	37	7	49815193	49815193	+	Silent	SNP	C	C	T	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	8	7	5	0	0	0	0	0	0
STAG3L2	442582	bcgsc.ca	37	7	74300942	74300942	+	RNA	SNP	C	C	T	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	67	17	90	1	1	1	0	0	0
RHBDD2	57414	broad.mit.edu;bcgsc.ca	37	7	75511278	75511278	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	399	22	337	1	82	81	1	0	0
POMZP3	22932	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	76240801	76240801	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	382	118	373	1	18	10	8	0	0
PCLO	27445	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	82579041	82579041	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	111	46	87	0	0	0	0	0	0
PCLO	27445	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	82585266	82585266	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	99	44	92	0	0	0	0	0	0
ANKIB1	54467	ucsc.edu;bcgsc.ca	37	7	91957150	91957150	+	Silent	SNP	T	T	C	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	67	30	56	1	1	0	1	0	0
PRKAR2B	5577	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	106799967	106799967	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	114	42	111	0	0	0	0	0	0
ADCK2	90956	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	140380887	140380887	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	287	122	278	0	31	16	15	0	0
RNF19A	25897	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	101276971	101276971	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	98	23	100	0	9	7	2	0	0
RSPO2	340419	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	108970372	108970372	+	Silent	SNP	T	T	C	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	239	112	217	0	0	0	0	0	0
MROH5	389690	broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	142486196	142486196	+	Silent	SNP	G	G	A	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	133	71	130	0	0	0	0	0	0
EEF1D	1936	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	144661995	144661995	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	112	42	99	0	0	0	0	0	0
STOML2	30968	broad.mit.edu	37	9	35101165	35101165	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	108	7	89	0	123	121	2	0	0
MELK	9833	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	36583634	36583634	+	Silent	SNP	A	A	G	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	31	13	34	0	0	0	0	0	0
ACOT9	23597	broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	23723676	23723676	+	Silent	SNP	G	G	A	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	66	48	130	2	5	2	3	0	0
POLA1	5422	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	24744126	24744126	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	34	26	99	0	0	0	0	0	0
OPHN1	4983	bcgsc.ca	37	X	67283721	67283721	+	Silent	SNP	G	G	A	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	68	62	28	1	0	0	0	0	0
SLC25A53	401612	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	103349337	103349337	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	84	12	66	0	0	0	0	0	0
COL4A5	1287	broad.mit.edu;bcgsc.ca	37	X	107938134	107938134	+	Missense_Mutation	SNP	G	G	A	rs104886424		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	219	9	184	0	12	11	1	0	0
HECTD4	283450	broad.mit.edu	37	12	112623045	112623046	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	14	6	12	0	0	0	0	0	0
SETD2	29072	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	47163966	47163967	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	49	37	71	0	0	0	0	0	0
STAB1	23166	hgsc.bcm.edu	37	3	52555670	52555671	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	92	14	108	0	0	0	0	0	0
KLC4	89953	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	43041642	43041643	+	Frame_Shift_Ins	INS	-	-	CAACACGA	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	126	24	146	0	0	0	0	0	0
RBM33	155435	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	155534581	155534582	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	165	69	190	0	0	0	0	0	0
FUT10	84750	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	33246682	33246683	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	311	126	301	0	0	0	0	0	0
ZNF814	730051	hgsc.bcm.edu	37	19	58385798	58385799	+	Missense_Mutation	DNP	CC	CC	TT	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	CC	CC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	119	13	96	0	0	0	0	0	0
NEUROD6	63974	broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	31378439	31378440	+	Missense_Mutation	DNP	TT	TT	AA	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	TT	TT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	97	36	80	1	0	0	0	0	0
