Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	TTotCov	TVarCov	NTotCov	NVarCov	Trna_tot	Trna_ref	Trna_var	Trna_alt1	Trna_alt2
TMEM52	339456	broad.mit.edu	37	1	1850628	1850636	+	In_Frame_Del	DEL	AGCGGCAGG	AGCGGCAGG	-	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	AGCGGCAGG	AGCGGCAGG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	7	3	5	0	0	0	0	0	0
NBPF1	55672	broad.mit.edu	37	1	16889992	16889992	+	RNA	SNP	G	G	A	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	17	5	14	0	5	5	0	0	0
KIAA1522	57648	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	33236795	33236795	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	141	46	134	0	13	3	10	0	0
WDR65	149465	bcgsc.ca	37	1	43649507	43649507	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	149	7	152	0	0	0	0	0	0
TOE1	114034	ucsc.edu;bcgsc.ca	37	1	45808520	45808520	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	38	5	40	0	0	0	0	0	0
EFCAB14-AS1	100130197	bcgsc.ca	37	1	47153969	47153970	+	RNA	DEL	TT	TT	-	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	TT	TT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	36	12	32	0	0	0	0	0	0
CYP4Z2P	163720	bcgsc.ca	37	1	47349050	47349050	+	RNA	SNP	T	T	C	rs2247305		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	46	6	41	0	0	0	0	0	0
SLC5A9	200010	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	48708165	48708165	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	162	9	129	0	0	0	0	0	0
CTH	1491	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	70895506	70895506	+	Silent	SNP	T	T	C	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	79	26	76	0	2	1	1	0	0
ABCA4	24	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	94528186	94528186	+	Silent	SNP	A	A	T	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	59	16	63	0	0	0	0	0	0
SEMA6C	10500	hgsc.bcm.edu	37	1	151112138	151112138	+	Silent	SNP	T	T	C	rs200312578	alternate_allele	TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	62	4	50	0	0	0	0	0	0
MRPL9	65005	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	151735603	151735616	+	Frame_Shift_Del	DEL	CGCTCCACGATGAC	CGCTCCACGATGAC	-	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	CGCTCCACGATGAC	CGCTCCACGATGAC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	47	12	52	0	0	0	0	0	0
THBS3	7059	ucsc.edu	37	1	155173033	155173033	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	34	4	51	0	2	2	0	0	0
USH2A	7399	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	216373415	216373415	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	90	31	88	1	0	0	0	0	0
JMJD4	65094	ucsc.edu	37	1	227920039	227920039	+	RNA	SNP	C	C	A	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	41	4	45	0	14	14	0	0	0
OBSCN	84033	ucsc.edu	37	1	228511237	228511237	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	34	4	21	0	0	0	0	0	0
CDHR1	92211	broad.mit.edu	37	10	85968003	85968003	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	84	3	70	0	2	2	0	0	0
PNLIP	5406	ucsc.edu	37	10	118320034	118320034	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	27	4	32	0	0	0	0	0	0
LOC650368	0	broad.mit.edu	37	11	3427845	3427845	+	RNA	SNP	C	C	T	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	61	7	60	1	5	2	3	0	0
OR4C15	81309	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	55322355	55322355	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	175	53	138	0	0	0	0	0	0
HNRNPUL2-BSCL2	0	bcgsc.ca	37	11	62482880	62482880	+	RNA	SNP	G	G	T	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	78	25	65	0	0	0	0	0	0
ARHGEF17	9828	bcgsc.ca	37	11	73021278	73021278	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	61	6	59	0	2	2	0	0	0
C2CD3	26005	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	73745646	73745646	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	40	10	51	0	0	0	0	0	0
TPI1	7167	broad.mit.edu;bcgsc.ca	37	12	6976722	6976722	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	34	16	28	1	63	36	27	0	0
TAS2R14	50840	ucsc.edu	37	12	11091514	11091514	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	32	5	55	0	0	0	0	0	0
LRIG3	121227	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	59283874	59283874	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	257	80	253	0	0	0	0	0	0
LRRC10	376132	ucsc.edu	37	12	70004209	70004209	+	Missense_Mutation	SNP	G	G	T	rs148806029		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	55	5	59	1	0	0	0	0	0
NTS	4922	ucsc.edu	37	12	86272345	86272345	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	45	5	54	0	0	0	0	0	0
SLC7A1	6541	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	30096467	30096467	+	Silent	SNP	C	C	T	rs150705194		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	254	65	249	0	0	0	0	0	0
ZC3H13	23091	bcgsc.ca	37	13	46619172	46619172	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	136	8	108	1	4	4	0	0	0
RCBTB2	1102	ucsc.edu	37	13	49075993	49075993	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	49	5	46	0	0	0	0	0	0
GPC6	10082	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	94482740	94482740	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	53	18	85	0	7	0	7	0	0
RAP2A	5911	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	98086836	98086836	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	174	57	149	0	1	1	0	0	0
GPR18	2841	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	99907879	99907879	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	69	18	79	0	0	0	0	0	0
OR4K2	390431	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	20345257	20345257	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	151	32	188	1	0	0	0	0	0
PRKD1	5587	ucsc.edu	37	14	30107916	30107916	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	46	5	53	0	1	1	0	0	0
SNX6	58533	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	35062276	35062276	+	Silent	SNP	A	A	T	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	61	18	96	0	20	9	11	0	0
CLEC14A	161198	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	38724316	38724316	+	Silent	SNP	C	C	T	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	139	50	135	0	0	0	0	0	0
PRPF39	55015	hgsc.bcm.edu	37	14	45565377	45565377	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	19	2	19	0	1	1	0	0	0
FERMT2	10979	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	53386065	53386065	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	99	27	107	0	0	0	0	0	0
ATG14	22863	bcgsc.ca	37	14	55878418	55878418	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	29	5	36	0	1	1	0	0	0
SLC35F4	341880	ucsc.edu;bcgsc.ca	37	14	58030899	58030899	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	44	5	39	0	0	0	0	0	0
ADAM21P1	145241	broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	70713349	70713349	+	RNA	SNP	T	T	C	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	287	54	262	0	0	0	0	0	0
DYNC1H1	1778	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	102466716	102466716	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	87	28	85	0	6	5	1	0	0
DYNC1H1	1778	broad.mit.edu	37	14	102483738	102483738	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	150	4	163	1	8	8	0	0	0
ATP10A	57194	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	15	25924510	25924510	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	100	25	74	0	0	0	0	0	0
RYR3	6263	ucsc.edu	37	15	33842468	33842468	+	Missense_Mutation	SNP	G	G	T	rs201830013	alternate_allele	TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	31	4	43	0	0	0	0	0	0
INO80	54617	ucsc.edu	37	15	41388484	41388484	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	42	4	54	0	0	0	0	0	0
TMEM87A	25963	ucsc.edu	37	15	42536249	42536249	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	42	4	47	0	0	0	0	0	0
HAPLN3	145864	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	15	89422488	89422488	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	65	19	68	0	0	0	0	0	0
SYNM	23336	broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	99670274	99670274	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	52	12	50	0	0	0	0	0	0
ZNF598	90850	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	16	2052644	2052644	+	Silent	SNP	C	C	T	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	50	10	40	0	5	4	1	0	0
CLUAP1	23059	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	3554721	3554721	+	Silent	SNP	T	T	C	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	105	21	60	0	0	0	0	0	0
GSPT1	2935	ucsc.edu	37	16	11990554	11990554	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	19	4	22	0	20	20	0	0	0
RRN3	54700	ucsc.edu	37	16	15188060	15188060	+	Missense_Mutation	SNP	G	G	A	rs201504364		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	35	8	12	0	6	6	0	0	0
RRN3	54700	ucsc.edu	37	16	15188066	15188066	+	Missense_Mutation	SNP	G	G	A	rs200006712		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	37	8	12	0	5	5	0	0	0
SETD1A	9739	bcgsc.ca	37	16	30977364	30977364	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	180	8	113	1	4	4	0	0	0
FAM96B	51647	bcgsc.ca	37	16	66966176	66966176	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	64	5	38	0	173	173	0	0	0
SPG7	6687	broad.mit.edu	37	16	89613084	89613084	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	173	33	146	16	16	16	0	0	0
KIF1C	10749	ucsc.edu	37	17	4910623	4910623	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	33	4	22	0	1	1	0	0	0
TIAF1	9220	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	27400954	27400954	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	251	129	206	0	23	6	17	0	0
ABHD15	116236	bcgsc.ca	37	17	27893331	27893331	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	77	6	58	1	10	10	0	0	0
TMEM101	84336	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	42089524	42089524	+	Silent	SNP	C	C	T	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	122	27	97	0	27	20	7	0	0
TOB1	10140	broad.mit.edu	37	17	48941062	48941062	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	150	3	135	0	46	46	0	0	0
BZRAP1	9256	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	56386306	56386306	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	149	36	89	0	1	0	1	0	0
KCNH6	81033	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	61623123	61623123	+	Silent	SNP	C	C	T	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	169	33	126	0	0	0	0	0	0
EVPL	2125	broad.mit.edu;bcgsc.ca	37	17	74004559	74004559	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	29	9	22	0	6	5	1	0	0
DCXR	51181	ucsc.edu	37	17	79994118	79994118	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	43	5	41	0	184	184	0	0	0
ANKRD12	23253	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	9257291	9257291	+	Silent	SNP	T	T	C	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	120	43	132	0	3	1	2	0	0
ASXL3	80816	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	31263418	31263418	+	Silent	SNP	A	A	G	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	54	14	53	0	0	0	0	0	0
HDHD2	84064	ucsc.edu;bcgsc.ca	37	18	44635157	44635157	+	Splice_Site	SNP	C	C	A	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	33	5	41	0	0	0	0	0	0
ELAC1	55520	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	48513160	48513160	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	48	14	55	0	5	2	3	0	0
ALPK2	115701	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	56196435	56196435	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	104	29	123	1	3	1	2	0	0
PLIN4	729359	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	4512468	4512468	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	216	58	210	1	0	0	0	0	0
ALKBH7	84266	hgsc.bcm.edu	37	19	6372879	6372879	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	7	4	5	1	5	2	3	0	0
ZNF763	284390	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	12089881	12089881	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	143	55	121	0	0	0	0	0	0
MAN2B1	4125	bcgsc.ca	37	19	12759091	12759091	+	Silent	SNP	G	G	T	rs10410289	byfrequency;alternate_allele	TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	38	5	23	0	13	13	0	0	0
ZSWIM4	65249	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	13915960	13915960	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	64	17	73	0	0	0	0	0	0
JAK3	3718	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	17946018	17946018	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	50	13	52	0	0	0	0	0	0
ZNF626	199777	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	20808028	20808028	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	48	11	64	0	1	1	0	0	0
KCTD15	79047	ucsc.edu	37	19	34302348	34302348	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	31	4	25	0	0	0	0	0	0
LGI4	163175	bcgsc.ca	37	19	35617294	35617294	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	29	5	22	0	0	0	0	0	0
RASGRP4	115727	ucsc.edu	37	19	38909077	38909077	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	41	4	24	0	0	0	0	0	0
GRWD1	83743	bcgsc.ca	37	19	48954384	48954384	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	103	7	86	0	13	13	0	0	0
ZNF787	126208	hgsc.bcm.edu	37	19	56599455	56599455	+	Missense_Mutation	SNP	C	C	G	rs202243737		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	26	14	11	0	0	0	0	0	0
GALP	85569	ucsc.edu	37	19	56696615	56696615	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	44	4	52	0	0	0	0	0	0
ADD2	119	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	2	70900055	70900055	+	Missense_Mutation	SNP	C	C	A	rs138503054	alternate_allele	TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	52	17	41	0	0	0	0	0	0
MAP4K4	9448	ucsc.edu	37	2	102441805	102441805	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	34	5	43	0	4	4	0	0	0
PLEKHB2	55041	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	131904282	131904282	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	311	83	293	0	0	0	0	0	0
PLEKHB2	55041	hgsc.bcm.edu	37	2	131904282	131904284	+	In_Frame_Del	DEL	CAC	CAC	-	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	CAC	CAC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	317	51	302	0	0	0	0	0	0
SLC23A3	151295	ucsc.edu	37	2	220033382	220033382	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	40	5	38	0	0	0	0	0	0
HTR2B	3357	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	231988374	231988374	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	144	48	132	0	0	0	0	0	0
COL6A3	1293	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	238283616	238283616	+	Missense_Mutation	SNP	C	C	T	rs78427077		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	76	24	87	0	1	1	0	0	0
GDF5	8200	broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	34025518	34025518	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	22	7	18	0	0	0	0	0	0
SALL4	57167	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	50405586	50405586	+	Silent	SNP	G	G	A	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	59	19	73	0	0	0	0	0	0
RTEL1-TNFRSF6B	100533107	bcgsc.ca	37	20	62294006	62294006	+	RNA	SNP	C	C	T	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	46	16	48	0	0	0	0	0	0
LINC00266-1	140849	broad.mit.edu	37	20	62926391	62926395	+	RNA	DEL	GATAC	GATAC	-	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	GATAC	GATAC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	62	0	53	0	0	0	0	0	0
KRTAP13-1	140258	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	21	31768620	31768620	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	83	26	89	0	0	0	0	0	0
SNORA80	677846	bcgsc.ca	37	21	33749530	33749530	+	RNA	SNP	G	G	T	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	58	5	74	0	0	0	0	0	0
SLC37A1	54020	ucsc.edu	37	21	43988470	43988470	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	36	5	38	0	1	1	0	0	0
NDUFV3	4731	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	21	44317078	44317078	+	Silent	SNP	T	T	C	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	94	27	121	0	14	7	7	0	0
AIFM3	150209	bcgsc.ca	37	22	21331211	21331211	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	152	7	104	0	1	1	0	0	0
PPM1F	9647	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	22287929	22287929	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	57	25	47	0	1	0	1	0	0
ZNF70	7621	ucsc.edu	37	22	24086754	24086754	+	Missense_Mutation	SNP	C	C	A	rs141104976	alternate_allele	TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	32	4	38	0	0	0	0	0	0
SFI1	9814	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	31924806	31924806	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	130	41	110	0	2	0	2	0	0
APOL1	8542	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	36661665	36661665	+	Silent	SNP	C	C	T	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	60	18	66	0	126	64	62	0	0
TNRC6B	23112	hgsc.bcm.edu;broad.mit.edu	37	22	40669533	40669533	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	13	5	9	0	1	0	1	0	0
AZI2	64343	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	28382066	28382066	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	127	50	121	0	0	0	0	0	0
CRTAP	10491	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	33156008	33156008	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	42	14	20	0	53	18	35	0	0
PTH1R	5745	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	46939563	46939563	+	Splice_Site	SNP	G	G	T	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	183	40	125	1	3	0	3	0	0
USP4	7375	bcgsc.ca	37	3	49377367	49377367	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	192	8	134	2	0	0	0	0	0
CISH	1154	broad.mit.edu;bcgsc.ca	37	3	50645554	50645554	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	69	10	66	0	0	0	0	0	0
ATP2C1	27032	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	130686204	130686204	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	132	33	96	1	36	30	6	0	0
DZIP1L	199221	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	137805834	137805834	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	133	31	102	0	0	0	0	0	0
RASA2	5922	broad.mit.edu;bcgsc.ca	37	3	141326509	141326518	+	Splice_Site	DEL	TTATTATTTA	TTATTATTTA	-	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	TTATTATTTA	TTATTATTTA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	35	21	34	0	0	0	0	0	0
EIF4G1	1981	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	184041746	184041746	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	124	33	104	0	40	26	14	0	0
HGFAC	3083	ucsc.edu	37	4	3444828	3444828	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	39	4	27	0	0	0	0	0	0
LAP3	51056	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	17590497	17590497	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	134	50	121	0	27	11	16	0	0
TMEM156	80008	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	38990526	38990526	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	121	31	160	1	0	0	0	0	0
GRXCR1	389207	bcgsc.ca	37	4	42964936	42964936	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	193	8	181	3	0	0	0	0	0
KIAA1211	57482	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	57182080	57182080	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	65	22	94	0	0	0	0	0	0
PRKG2	5593	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	82074809	82074809	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	55	10	57	0	0	0	0	0	0
OSTC	58505	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	109571838	109571838	+	Silent	SNP	C	C	T	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	131	42	90	0	37	27	10	0	0
NDUFS6	4726	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	1801592	1801592	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	44	21	32	0	37	21	16	0	0
NIPBL	25836	ucsc.edu	37	5	36976504	36976504	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	36	4	40	1	0	0	0	0	0
CSNK1G3	1456	ucsc.edu	37	5	122940483	122940483	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	40	4	29	0	4	4	0	0	0
JAKMIP2	9832	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	147010974	147010974	+	Splice_Site	SNP	A	A	G	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	53	13	65	0	0	0	0	0	0
CSF1R	1436	ucsc.edu	37	5	149433682	149433682	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	41	4	30	0	10	10	0	0	0
C6orf195	154386	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	2623684	2623684	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	75	27	64	0	0	0	0	0	0
C6orf223	221416	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	43970795	43970795	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	88	37	88	0	0	0	0	0	0
RUNX2	860	hgsc.bcm.edu	37	6	45390466	45390466	+	Silent	SNP	A	A	G	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	67	4	43	0	2812	33	2779	0	0
GFRAL	389400	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	55223709	55223709	+	Nonsense_Mutation	DEL	C	C	-	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	130	46	112	0	0	0	0	0	0
KIAA1919	91749	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	111587895	111587895	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	220	67	205	0	1	0	1	0	0
TIAM2	26230	hgsc.bcm.edu	37	6	155577964	155577964	+	Silent	SNP	C	C	A	rs201979145	alternate_allele	TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	57	3	53	2	1	1	0	0	0
MLLT4	4301	ucsc.edu;bcgsc.ca	37	6	168276027	168276027	+	Silent	SNP	A	A	C	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	275	87	259	2	0	0	0	0	0
THBS2	7058	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	169622311	169622311	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	102	25	150	0	33	23	10	0	0
INTS1	26173	ucsc.edu	37	7	1529028	1529028	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	27	4	17	0	0	0	0	0	0
CCM2	83605	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	45104062	45104062	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	75	11	41	0	0	0	0	0	0
PCLO	27445	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	82532016	82532016	+	Silent	SNP	A	A	G	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	111	63	89	0	0	0	0	0	0
SEMA3D	223117	bcgsc.ca	37	7	84644465	84644465	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	227	10	207	1	0	0	0	0	0
AGFG2	3268	hgsc.bcm.edu;broad.mit.edu	37	7	100160553	100160553	+	Silent	SNP	C	C	T	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	36	7	27	0	17	12	5	0	0
CHCHD3	54927	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	132523165	132523165	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	75	39	69	0	0	0	0	0	0
TRPV6	55503	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	142569741	142569741	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	145	30	114	1	0	0	0	0	0
ABCF2	10061	ucsc.edu	37	7	150920785	150920785	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	42	4	31	0	4	4	0	0	0
NUB1	51667	broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	151064971	151064971	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	25	6	26	0	19	15	4	0	0
CSMD1	64478	ucsc.edu	37	8	2823308	2823308	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	25	4	26	0	0	0	0	0	0
SFRP1	6422	ucsc.edu	37	8	41166510	41166510	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	34	4	41	0	1	1	0	0	0
KCNV1	27012	hgsc.bcm.edu	37	8	110986410	110986410	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	15	8	18	0	1	0	1	0	0
SLC30A8	169026	bcgsc.ca	37	8	118184887	118184887	+	Silent	SNP	C	C	A	rs149843171	alternate_allele	TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	240	9	197	1	0	0	0	0	0
PTGER4P2-CDK2AP2P2	442421	bcgsc.ca	37	9	66500810	66500810	+	RNA	SNP	G	G	A	rs201331241		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	38	6	29	0	0	0	0	0	0
ASTN2	23245	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	119202962	119202962	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	133	50	121	1	5	4	1	0	0
PTRH1	138428	ucsc.edu	37	9	130476385	130476385	+	Silent	SNP	C	C	T	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	21	1	29	0	16	11	5	0	0
GOLGA2	2801	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	131028577	131028577	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	107	39	124	0	0	0	0	0	0
UBAC1	10422	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	138839743	138839743	+	Silent	SNP	T	T	C	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	34	15	30	0	0	0	0	0	0
NOTCH1	4851	ucsc.edu	37	9	139418248	139418248	+	Silent	SNP	G	G	A	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	42	4	38	0	0	0	0	0	0
GPKOW	27238	ucsc.edu	37	X	48979105	48979105	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	42	4	32	0	8	8	0	0	0
GLUD2	2747	ucsc.edu	37	X	120182805	120182805	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	124	2	121	0	79	0	79	0	0
RPL10	6134	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	153627911	153627911	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	89	50	91	0	1065	187	877	0	1
PROX1	5629	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	214170437	214170438	+	Frame_Shift_Ins	INS	-	-	AT	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	74	21	79	0	0	0	0	0	0
SRCAP	10847	broad.mit.edu	37	16	30736370	30736371	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	237	0	145	0	0	0	0	0	0
DNAJC28	54943	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	21	34861049	34861050	+	Nonsense_Mutation	INS	-	-	A	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	202	51	202	0	0	0	0	0	0
MITF	4286	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	69988260	69988261	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	75	38	47	0	0	0	0	0	0
KDR	3791	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	55981041	55981042	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	93	27	83	0	0	0	0	0	0
PLEKHB2	55041	hgsc.bcm.edu;bcgsc.ca	37	2	131904283	131904284	+	Missense_Mutation	DNP	AC	AC	GG	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	AC	AC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	310	84	305	0	0	0	0	0	0
USP19	10869	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	49148708	49148709	+	Missense_Mutation	DNP	TC	TC	AT	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	TC	TC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	115	58	88	0	0	0	0	0	0
