Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	TTotCov	TVarCov	NTotCov	NVarCov	Trna_tot	Trna_ref	Trna_var	Trna_alt1	Trna_alt2
SAMD11	148398	ucsc.edu	37	1	878725	878725	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	34	4	71	0	12	12	0	0	0
NOC2L	26155	ucsc.edu	37	1	881564	881564	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	44	4	40	0	1	1	0	0	0
AGRN	375790	ucsc.edu	37	1	977520	977520	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	39	4	67	0	548	548	0	0	0
MMEL1	79258	ucsc.edu;bcgsc.ca	37	1	2540857	2540857	+	Silent	SNP	C	C	A	rs145177132	alternate_allele	TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	27	5	25	0	0	0	0	0	0
NPHP4	261734	ucsc.edu	37	1	5965709	5965709	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	38	4	45	0	6	6	0	0	0
PLEKHG5	57449	ucsc.edu	37	1	6528549	6528549	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	39	4	49	0	6	6	0	0	0
PHF13	148479	ucsc.edu	37	1	6680256	6680256	+	Nonsense_Mutation	SNP	G	G	T	rs201588675	alternate_allele	TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	54	5	80	0	25	25	0	0	0
CLSTN1	22883	bcgsc.ca	37	1	9796038	9796038	+	Missense_Mutation	SNP	C	C	A	rs72633875	alternate_allele	TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	152	9	159	0	191	191	0	0	0
KIAA2013	90231	ucsc.edu	37	1	11985708	11985708	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	44	5	50	0	9	9	0	0	0
PRDM2	7799	ucsc.edu	37	1	14105825	14105825	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	46	6	49	0	6	6	0	0	0
CTRC	11330	bcgsc.ca	37	1	15772170	15772170	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	145	8	188	1	0	0	0	0	0
SPATA21	374955	ucsc.edu	37	1	16736161	16736161	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	30	4	63	0	0	0	0	0	0
ATP13A2	23400	ucsc.edu	37	1	17318772	17318772	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	43	4	61	0	47	47	0	0	0
SDHB	6390	ucsc.edu;bcgsc.ca	37	1	17371316	17371316	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	64	9	75	0	114	114	0	0	0
KLHDC7A	127707	ucsc.edu	37	1	18807605	18807605	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	71	7	67	0	2	2	0	0	0
KLHDC7A	127707	ucsc.edu	37	1	18807696	18807696	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	40	4	44	0	14	14	0	0	0
PAX7	5081	ucsc.edu	37	1	19018400	19018400	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	35	4	41	0	0	0	0	0	0
PINK1	65018	ucsc.edu	37	1	20975121	20975121	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	44	5	56	0	6	6	0	0	0
HSPG2	3339	ucsc.edu	37	1	22222444	22222444	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	37	4	55	0	40	40	0	0	0
GALE	2582	ucsc.edu	37	1	24123423	24123423	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	29	4	45	0	0	0	0	0	0
GALE	2582	bcgsc.ca	37	1	24125444	24125444	+	Silent	SNP	C	C	A	rs187654497	alternate_allele	TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	96	7	123	1	55	55	0	0	0
PDIK1L	149420	ucsc.edu	37	1	26440950	26440950	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	42	4	27	0	2	2	0	0	0
PIGV	55650	bcgsc.ca	37	1	27120705	27120705	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	96	8	119	0	19	19	0	0	0
GPATCH3	63906	bcgsc.ca	37	1	27219262	27219262	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	389	15	411	3	10	10	0	0	0
PTAFR	5724	ucsc.edu	37	1	28476939	28476939	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	38	4	36	0	7	7	0	0	0
SESN2	83667	bcgsc.ca	37	1	28607299	28607299	+	Missense_Mutation	SNP	C	C	A	rs149879215	alternate_allele	TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	113	8	156	0	13	13	0	0	0
TINAGL1	64129	ucsc.edu	37	1	32042828	32042828	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	41	4	34	0	57	57	0	0	0
ZBTB8OS	339487	bcgsc.ca	37	1	33099612	33099612	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	109	8	87	0	48	48	0	0	0
RBBP4	5928	bcgsc.ca	37	1	33135100	33135100	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	134	8	94	0	159	159	0	0	0
TRIM62	55223	ucsc.edu	37	1	33631124	33631124	+	Missense_Mutation	SNP	C	C	A	rs149870428	byfrequency;alternate_allele	TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	30	4	26	0	2	2	0	0	0
ZSCAN20	7579	ucsc.edu	37	1	33954753	33954753	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	36	4	55	1	1	1	0	0	0
KIAA0319L	79932	broad.mit.edu	37	1	36020070	36020070	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	136	4	127	0	19	16	3	0	0
AGO4	192670	ucsc.edu	37	1	36292396	36292396	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	54	5	27	0	4	4	0	0	0
MACF1	23499	bcgsc.ca	37	1	39838256	39838256	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	76	7	45	0	0	0	0	0	0
COL9A2	1298	ucsc.edu	37	1	40776918	40776918	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	43	4	42	0	20	20	0	0	0
NFYC	4802	ucsc.edu	37	1	41228643	41228643	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	55	6	44	0	71	70	0	0	1
HIVEP3	59269	bcgsc.ca	37	1	42048952	42048952	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	150	8	215	0	1	1	0	0	0
ERMAP	114625	ucsc.edu	37	1	43296558	43296558	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	35	5	22	0	8	8	0	0	0
KLF17	128209	bcgsc.ca	37	1	44596307	44596307	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	123	8	154	0	0	0	0	0	0
TMEM53	79639	ucsc.edu	37	1	45140016	45140016	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	43	5	47	0	3	3	0	0	0
PTCH2	8643	ucsc.edu	37	1	45291922	45291922	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	34	5	38	0	0	0	0	0	0
CYB5RL	606495	ucsc.edu	37	1	54640459	54640459	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	42	4	51	0	2	2	0	0	0
C1orf177	163747	ucsc.edu	37	1	55277856	55277856	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	50	5	64	0	0	0	0	0	0
USP24	23358	ucsc.edu	37	1	55567368	55567368	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	28	4	19	0	0	0	0	0	0
ATG4C	84938	bcgsc.ca	37	1	63284955	63284955	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	92	8	44	0	7	7	0	0	0
DNAJC6	9829	ucsc.edu	37	1	65850001	65850001	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	44	5	46	0	0	0	0	0	0
DNASE2B	58511	ucsc.edu	37	1	84876572	84876572	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	54	5	39	0	0	0	0	0	0
SYDE2	84144	ucsc.edu	37	1	85648024	85648024	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	63	6	49	0	3	3	0	0	0
CLCA2	9635	bcgsc.ca	37	1	86919113	86919113	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	118	9	94	0	0	0	0	0	0
DNTTIP2	30836	bcgsc.ca	37	1	94342801	94342801	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	266	13	242	1	14	14	0	0	0
CDC14A	8556	ucsc.edu;bcgsc.ca	37	1	100819371	100819371	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	53	7	32	0	2	2	0	0	0
WDR47	22911	bcgsc.ca	37	1	109538443	109538443	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	137	11	123	0	4	4	0	0	0
CELSR2	1952	ucsc.edu	37	1	109793850	109793850	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	40	4	69	0	16	16	0	0	0
CELSR2	1952	bcgsc.ca	37	1	109813581	109813581	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	310	13	375	0	78	78	0	0	0
KCNA3	3738	bcgsc.ca	37	1	111216031	111216031	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	76	6	67	0	8	8	0	0	0
AKR7A2P1	246182	ucsc.edu	37	1	113466328	113466328	+	RNA	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	53	5	54	0	0	0	0	0	0
MAGI3	260425	bcgsc.ca	37	1	114215983	114215983	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	147	12	161	0	2	2	0	0	0
PDE4DIP	9659	bcgsc.ca	37	1	144877177	144877177	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	178	11	160	0	1	1	0	0	0
FAM63A	55793	ucsc.edu	37	1	150970209	150970209	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	42	4	66	1	25	25	0	0	0
PRUNE	58497	ucsc.edu	37	1	150997192	150997192	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	41	4	79	0	23	23	0	0	0
POGZ	23126	ucsc.edu	37	1	151379083	151379083	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	63	6	46	0	0	0	0	0	0
RORC	6097	bcgsc.ca	37	1	151804227	151804227	+	Missense_Mutation	SNP	G	G	T	rs201660295	alternate_allele	TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	146	11	173	0	11	11	0	0	0
FLG	2312	bcgsc.ca	37	1	152285906	152285906	+	Missense_Mutation	SNP	C	C	A	rs142634697	alternate_allele	TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	300	12	360	1	6	6	0	0	0
EFNA3	1944	ucsc.edu	37	1	155057829	155057829	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	29	4	28	0	4	4	0	0	0
HCN3	57657	bcgsc.ca	37	1	155257122	155257122	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	81	7	97	0	0	0	0	0	0
KIAA0907	22889	hgsc.bcm.edu	37	1	155887397	155887397	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	37	2	36	0	3	3	0	0	0
IQGAP3	128239	ucsc.edu;bcgsc.ca	37	1	156502788	156502788	+	Missense_Mutation	SNP	G	G	T	rs200621017	alternate_allele	TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	52	6	74	0	5	5	0	0	0
OR6K6	128371	bcgsc.ca	37	1	158725364	158725364	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	124	9	144	1	0	0	0	0	0
F5	2153	ucsc.edu	37	1	169519882	169519882	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	52	6	52	0	0	0	0	0	0
PRRC2C	23215	ucsc.edu	37	1	171537412	171537412	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	39	4	29	0	57	57	0	0	0
TNN	63923	ucsc.edu	37	1	175054581	175054581	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	32	4	25	0	0	0	0	0	0
RALGPS2	55103	ucsc.edu	37	1	178745915	178745915	+	Missense_Mutation	SNP	G	G	T	rs139533001	alternate_allele	TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	42	5	25	0	17	17	0	0	0
IVNS1ABP	10625	bcgsc.ca	37	1	185274733	185274733	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	117	8	101	0	108	107	1	0	0
CYB5R1	51706	hgsc.bcm.edu	37	1	202932271	202932271	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	84	6	86	0	79	79	0	0	0
CYB5R1	51706	ucsc.edu	37	1	202932847	202932847	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	21	5	16	0	0	0	0	0	0
ZC3H11A	9877	bcgsc.ca	37	1	203820195	203820195	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	399	14	306	0	0	0	0	0	0
PLEKHA6	22874	ucsc.edu	37	1	204226809	204226809	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	16	4	31	0	10	10	0	0	0
USH2A	7399	bcgsc.ca	37	1	215847752	215847752	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	255	12	248	0	0	0	0	0	0
SNORA36B	677818	ucsc.edu	37	1	220373994	220373994	+	RNA	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	43	5	46	0	0	0	0	0	0
PARP1	142	ucsc.edu	37	1	226574037	226574037	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	60	6	48	0	0	0	0	0	0
OBSCN	84033	bcgsc.ca	37	1	228474494	228474494	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	82	7	106	0	4	4	0	0	0
GALNT2	2590	bcgsc.ca	37	1	230410190	230410190	+	Splice_Site	SNP	G	G	T	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	142	9	115	0	0	0	0	0	0
TARBP1	6894	ucsc.edu	37	1	234527371	234527371	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	63	6	63	0	3	3	0	0	0
ERO1LB	56605	bcgsc.ca	37	1	236389808	236389808	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	94	9	70	0	1	1	0	0	0
KIF26B	55083	ucsc.edu	37	1	245850524	245850524	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	36	4	31	0	8	8	0	0	0
AHCTF1	25909	ucsc.edu	37	1	247016443	247016443	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	54	4	37	0	21	21	0	0	0
AHCTF1	25909	bcgsc.ca	37	1	247062792	247062792	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	131	8	77	0	8	8	0	0	0
NLRP3	114548	ucsc.edu	37	1	247607322	247607322	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	50	5	59	0	5	5	0	0	0
OR2M3	127062	bcgsc.ca	37	1	248366884	248366884	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	250	10	292	0	0	0	0	0	0
ADARB2	105	ucsc.edu	37	10	1230951	1230951	+	Silent	SNP	C	C	A	rs201079175	alternate_allele	TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	39	4	59	0	0	0	0	0	0
PRKCQ	5588	bcgsc.ca	37	10	6506346	6506346	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	401	15	365	0	38	38	0	0	0
DHTKD1	55526	bcgsc.ca	37	10	12123550	12123550	+	Silent	SNP	C	C	A	rs138526346	byfrequency;alternate_allele	TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	147	8	135	0	11	11	0	0	0
ITGA8	8516	bcgsc.ca	37	10	15573065	15573065	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	205	10	115	1	0	0	0	0	0
NEBL	10529	bcgsc.ca	37	10	21108410	21108410	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	268	11	216	0	0	0	0	0	0
ZNF33B	7582	bcgsc.ca	37	10	43088204	43088204	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	203	10	169	0	20	20	0	0	0
C10orf71	118461	ucsc.edu	37	10	50531300	50531300	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	34	4	32	0	0	0	0	0	0
C10orf71	118461	ucsc.edu	37	10	50531995	50531995	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	32	4	42	0	0	0	0	0	0
SLC18A3	6572	bcgsc.ca	37	10	50819699	50819699	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	115	9	152	1	0	0	0	0	0
MYPN	84665	ucsc.edu	37	10	69926169	69926169	+	Silent	SNP	C	C	A	rs201279829	alternate_allele	TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	31	4	47	0	0	0	0	0	0
TET1	80312	bcgsc.ca	37	10	70412306	70412306	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	77	6	52	0	1	1	0	0	0
PRF1	5551	ucsc.edu	37	10	72360556	72360556	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	36	4	42	0	6	6	0	0	0
ADAMTS14	140766	ucsc.edu;bcgsc.ca	37	10	72496488	72496488	+	Missense_Mutation	SNP	C	C	A	rs200441505	alternate_allele	TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	72	7	81	0	4	4	0	0	0
UNC5B	219699	ucsc.edu	37	10	73055598	73055598	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	38	4	36	0	9	9	0	0	0
CDH23	64072	ucsc.edu	37	10	73453980	73453980	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	43	4	47	0	0	0	0	0	0
OIT3	170392	ucsc.edu	37	10	74658702	74658702	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	41	4	71	0	0	0	0	0	0
OIT3	170392	bcgsc.ca	37	10	74684093	74684093	+	Missense_Mutation	SNP	C	C	A	rs200649313	alternate_allele	TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	95	7	122	0	0	0	0	0	0
SEC24C	9632	bcgsc.ca	37	10	75530064	75530064	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	307	12	391	0	105	105	0	0	0
ZSWIM8	23053	ucsc.edu	37	10	75557556	75557556	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	42	4	61	0	19	19	0	0	0
KCNMA1	3778	bcgsc.ca	37	10	78708940	78708940	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	258	16	269	1	0	0	0	0	0
RNLS	55328	ucsc.edu	37	10	90342065	90342065	+	Splice_Site	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	42	4	36	0	0	0	0	0	0
LIPA	3988	ucsc.edu	37	10	90974635	90974635	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	51	5	39	0	55	55	0	0	0
RBP4	5950	ucsc.edu	37	10	95360439	95360439	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	25	4	44	0	1	1	0	0	0
CYP2C8	1558	bcgsc.ca	37	10	96824689	96824689	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	186	10	118	0	5	5	0	0	0
SLIT1	6585	ucsc.edu;bcgsc.ca	37	10	98781171	98781171	+	Splice_Site	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	41	6	44	0	0	0	0	0	0
ARHGAP19	84986	bcgsc.ca	37	10	99006078	99006078	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	79	6	51	0	4	4	0	0	0
RRP12	23223	ucsc.edu	37	10	99140660	99140660	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	48	5	58	0	0	0	0	0	0
CWF19L1	55280	bcgsc.ca	37	10	102005626	102005626	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	130	9	91	0	5	5	0	0	0
PKD2L1	9033	bcgsc.ca	37	10	102089764	102089764	+	Missense_Mutation	SNP	C	C	A	rs201665433	alternate_allele	TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	128	10	185	1	0	0	0	0	0
SFXN2	118980	bcgsc.ca	37	10	104493353	104493353	+	Missense_Mutation	SNP	G	G	T	rs113903951	bycluster;byfrequency;alternate_allele	TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	109	8	102	0	0	0	0	0	0
TAF5	6877	ucsc.edu	37	10	105145247	105145247	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	37	4	36	0	0	0	0	0	0
PDCD11	22984	hgsc.bcm.edu;bcgsc.ca	37	10	105202030	105202030	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	187	11	180	0	28	28	0	0	0
PNLIPRP1	5407	bcgsc.ca	37	10	118368594	118368594	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	96	8	100	0	0	0	0	0	0
WDR11	55717	ucsc.edu	37	10	122610930	122610930	+	RNA	SNP	G	G	T	rs112459242	alternate_allele	TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	31	4	30	0	6	6	0	0	0
TACC2	10579	ucsc.edu	37	10	123969987	123969987	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	32	4	34	0	7	7	0	0	0
BTBD16	118663	ucsc.edu	37	10	124043432	124043432	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	51	5	43	0	0	0	0	0	0
FAM175B	23172	ucsc.edu	37	10	126523375	126523375	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	71	7	76	1	20	20	0	0	0
ADAM12	8038	ucsc.edu	37	10	127753448	127753448	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	31	4	24	0	5	5	0	0	0
DOCK1	1793	ucsc.edu	37	10	129237454	129237454	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	36	4	29	0	53	53	0	0	0
MKI67	4288	bcgsc.ca	37	10	129906863	129906863	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	222	10	253	0	3	3	0	0	0
LRRC56	115399	ucsc.edu	37	11	551923	551923	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	37	4	49	0	12	12	0	0	0
TOLLIP	54472	ucsc.edu	37	11	1316980	1316980	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	14	4	19	0	42	42	0	0	0
IGF2	3481	ucsc.edu	37	11	2154863	2154863	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	38	4	56	0	0	0	0	0	0
OR52A1	23538	ucsc.edu	37	11	5173567	5173567	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	51	5	51	0	0	0	0	0	0
OR56A5	390084	ucsc.edu	37	11	5988906	5988906	+	Silent	SNP	C	C	A	rs61738948	alternate_allele	TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	39	4	45	0	0	0	0	0	0
DCHS1	8642	ucsc.edu;bcgsc.ca	37	11	6650045	6650045	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	30	6	29	0	2	2	0	0	0
AMPD3	272	ucsc.edu	37	11	10523016	10523016	+	Splice_Site	SNP	G	G	T	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	34	4	47	0	0	0	0	0	0
HPS5	11234	bcgsc.ca	37	11	18303596	18303596	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	134	8	142	0	14	14	0	0	0
NAT10	55226	ucsc.edu	37	11	34140006	34140006	+	Missense_Mutation	SNP	C	C	A	rs144347888	alternate_allele	TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	42	4	53	1	10	10	0	0	0
RAG2	5897	bcgsc.ca	37	11	36614806	36614806	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	201	12	184	2	0	0	0	0	0
AMBRA1	55626	bcgsc.ca	37	11	46568801	46568801	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	156	8	121	0	4	4	0	0	0
CELF1	10658	bcgsc.ca	37	11	47510469	47510469	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	223	9	208	1	16	16	0	0	0
NUP160	23279	hgsc.bcm.edu	37	11	47828693	47828693	+	Splice_Site	SNP	C	C	G	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	42	3	45	1	0	0	0	0	0
GLYATL1	92292	bcgsc.ca	37	11	58715361	58715361	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	112	7	113	1	3	3	0	0	0
CD5	921	ucsc.edu	37	11	60893295	60893295	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	44	4	40	0	4	4	0	0	0
PPP1R32	220004	ucsc.edu	37	11	61252172	61252172	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	36	5	52	0	0	0	0	0	0
AHNAK	79026	bcgsc.ca	37	11	62299753	62299753	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	329	15	316	0	86	86	0	0	0
PLCB3	5331	ucsc.edu	37	11	64022763	64022763	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	37	4	64	0	13	13	0	0	0
SLC22A11	55867	ucsc.edu	37	11	64323832	64323832	+	Missense_Mutation	SNP	C	C	A	rs75540378	byfrequency;alternate_allele	TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	42	4	66	0	11	11	0	0	0
NRXN2	9379	bcgsc.ca	37	11	64397879	64397879	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	71	6	77	1	0	0	0	0	0
NRXN2	9379	ucsc.edu	37	11	64418788	64418788	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	43	4	50	0	0	0	0	0	0
PYGM	5837	bcgsc.ca	37	11	64525729	64525729	+	Missense_Mutation	SNP	C	C	A	rs141265458	byfrequency;alternate_allele	TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	191	10	175	1	0	0	0	0	0
NAALADL1	10004	ucsc.edu	37	11	64821986	64821986	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	34	4	46	0	0	0	0	0	0
CAPN1	823	ucsc.edu	37	11	64953474	64953474	+	Silent	SNP	C	C	A	rs200317628	alternate_allele	TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	23	5	20	0	380	380	0	0	0
PCNXL3	399909	ucsc.edu	37	11	65384770	65384770	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	45	5	30	0	21	21	0	0	0
C11orf68	83638	ucsc.edu	37	11	65685648	65685648	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	34	4	30	0	33	33	0	0	0
ACTN3	89	bcgsc.ca	37	11	66328198	66328198	+	RNA	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	135	8	187	0	0	0	0	0	0
CARNS1	57571	ucsc.edu	37	11	67191523	67191523	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	30	4	36	0	0	0	0	0	0
ACY3	91703	bcgsc.ca	37	11	67412587	67412587	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	156	9	175	0	2	2	0	0	0
LRP5	4041	ucsc.edu	37	11	68125162	68125162	+	Missense_Mutation	SNP	G	G	T	rs183377804		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	39	4	46	0	37	37	0	0	0
LRP5	4041	bcgsc.ca	37	11	68171003	68171003	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	94	7	116	0	0	0	0	0	0
PPP6R3	55291	ucsc.edu	37	11	68370896	68370896	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	58	6	88	0	43	43	0	0	0
CTTN	2017	bcgsc.ca	37	11	70282501	70282501	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	289	11	240	0	224	224	0	0	0
FCHSD2	9873	ucsc.edu	37	11	72552599	72552599	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	29	4	29	0	47	47	0	0	0
SLCO2B1	11309	ucsc.edu	37	11	74862434	74862434	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	38	4	41	0	0	0	0	0	0
MAP6	4135	bcgsc.ca	37	11	75316930	75316930	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	199	9	167	1	9	9	0	0	0
LRRC32	2615	ucsc.edu	37	11	76371797	76371797	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	50	5	94	1	57	57	0	0	0
NDUFC2	4718	bcgsc.ca	37	11	77781012	77781012	+	RNA	SNP	G	G	T	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	100	9	52	0	158	158	0	0	0
PCF11	51585	ucsc.edu	37	11	82879869	82879869	+	Missense_Mutation	SNP	C	C	A	rs200272966	alternate_allele	TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	41	4	57	0	11	11	0	0	0
PCF11	51585	broad.mit.edu;bcgsc.ca	37	11	82882883	82882883	+	Silent	SNP	A	A	G	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	158	9	128	1	15	13	2	0	0
FAM76B	143684	ucsc.edu	37	11	95520788	95520788	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	39	4	22	0	0	0	0	0	0
ATM	472	bcgsc.ca	37	11	108158368	108158368	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	88	7	82	0	12	12	0	0	0
POU2AF1	5450	ucsc.edu	37	11	111228358	111228358	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	31	4	46	0	42	42	0	0	0
ALG9	79796	ucsc.edu;bcgsc.ca	37	11	111708330	111708330	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	39	5	55	0	0	0	0	0	0
NCAM1	4684	ucsc.edu	37	11	113103986	113103986	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	26	4	33	0	24	24	0	0	0
DSCAML1	57453	bcgsc.ca	37	11	117310629	117310629	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	148	10	166	0	2	2	0	0	0
DSCAML1	57453	bcgsc.ca	37	11	117335788	117335788	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	150	9	158	0	5	5	0	0	0
DSCAML1	57453	ucsc.edu	37	11	117352874	117352874	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	42	4	62	0	0	0	0	0	0
DDX6	1656	bcgsc.ca	37	11	118626200	118626200	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	126	7	88	0	0	0	0	0	0
BCL9L	283149	ucsc.edu	37	11	118772770	118772770	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	36	4	61	0	48	48	0	0	0
NLRX1	79671	bcgsc.ca	37	11	119050552	119050552	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	205	11	238	0	16	16	0	0	0
NLRX1	79671	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	119051968	119051968	+	Splice_Site	SNP	T	T	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	59	16	55	0	3	1	2	0	0
MCAM	4162	bcgsc.ca	37	11	119182985	119182985	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	88	6	114	0	0	0	0	0	0
PVRL1	5818	ucsc.edu;bcgsc.ca	37	11	119547836	119547836	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	60	7	82	0	14	14	0	0	0
TRIM29	23650	bcgsc.ca	37	11	119998174	119998174	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	182	12	191	1	3	3	0	0	0
FOXRED1	55572	bcgsc.ca	37	11	126146336	126146336	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	167	10	186	0	5	5	0	0	0
TIRAP	114609	ucsc.edu	37	11	126162415	126162415	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	37	4	48	0	7	7	0	0	0
ERC1	23085	bcgsc.ca	37	12	1225177	1225177	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	175	10	148	0	10	10	0	0	0
CACNA2D4	93589	ucsc.edu	37	12	2019078	2019078	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	33	5	33	0	0	0	0	0	0
ITFG2	55846	ucsc.edu;bcgsc.ca	37	12	2927408	2927408	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	66	8	60	1	23	23	0	0	0
USP5	8078	bcgsc.ca	37	12	6964682	6964682	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	271	13	262	0	0	0	0	0	0
CLSTN3	9746	ucsc.edu;bcgsc.ca	37	12	7301610	7301610	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	70	7	58	0	66	66	0	0	0
LRP6	4040	bcgsc.ca	37	12	12274335	12274335	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	218	10	210	0	12	12	0	0	0
TM7SF3	51768	bcgsc.ca	37	12	27149677	27149677	+	Silent	SNP	C	C	A	rs150245356	alternate_allele	TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	77	7	56	0	0	0	0	0	0
YARS2	51067	bcgsc.ca	37	12	32902875	32902875	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	155	8	159	0	0	0	0	0	0
PDZRN4	29951	bcgsc.ca	37	12	41967123	41967123	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	183	9	213	1	0	0	0	0	0
MLL2	8085	ucsc.edu	37	12	49425593	49425593	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	31	4	53	1	10	10	0	0	0
KCNH3	23416	ucsc.edu	37	12	49951554	49951554	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	42	4	57	0	0	0	0	0	0
FMNL3	91010	ucsc.edu	37	12	50050189	50050189	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	42	6	39	0	0	0	0	0	0
FIGNL2	401720	broad.mit.edu	37	12	52215124	52215124	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	6	2	7	0	0	0	0	0	0
KRT78	196374	ucsc.edu	37	12	53242704	53242704	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	41	4	42	0	0	0	0	0	0
OR6C75	390323	bcgsc.ca	37	12	55759009	55759009	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	274	14	253	0	0	0	0	0	0
ERBB3	2065	bcgsc.ca	37	12	56477656	56477656	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	201	11	218	1	29	29	0	0	0
ERBB3	2065	bcgsc.ca	37	12	56491620	56491620	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	277	11	238	0	22	22	0	0	0
SMARCC2	6601	ucsc.edu	37	12	56559257	56559257	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	33	4	52	0	68	68	0	0	0
BAZ2A	11176	bcgsc.ca	37	12	56994493	56994493	+	Missense_Mutation	SNP	C	C	A	rs199970765	alternate_allele	TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	211	12	224	0	46	46	0	0	0
STAT6	6778	ucsc.edu	37	12	57502044	57502044	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	28	4	26	0	82	81	0	0	1
LRP1	4035	bcgsc.ca	37	12	57603829	57603829	+	Missense_Mutation	SNP	C	C	A	rs150845737	alternate_allele	TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	100	7	132	0	78	78	0	0	0
CDK4	1019	bcgsc.ca	37	12	58145090	58145090	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	148	9	161	2	122	122	0	0	0
CPSF6	11052	bcgsc.ca	37	12	69651535	69651535	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	214	11	224	0	41	41	0	0	0
PTPRR	5801	hgsc.bcm.edu;ucsc.edu	37	12	71095023	71095023	+	Missense_Mutation	SNP	C	C	A	rs142312572	alternate_allele	TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	161	15	126	2	0	0	0	0	0
TMEM19	55266	bcgsc.ca	37	12	72092800	72092800	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	139	7	130	0	42	42	0	0	0
CAPS2	84698	ucsc.edu;bcgsc.ca	37	12	75693617	75693617	+	Missense_Mutation	SNP	C	C	A	rs138519970	alternate_allele	TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	56	6	31	0	0	0	0	0	0
ZDHHC17	23390	ucsc.edu	37	12	77216280	77216280	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	39	4	24	0	4	4	0	0	0
NAV3	89795	bcgsc.ca	37	12	78400237	78400237	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	157	9	133	0	1	1	0	0	0
UTP20	27340	bcgsc.ca	37	12	101693787	101693787	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	346	16	277	0	4	4	0	0	0
C12orf45	121053	ucsc.edu	37	12	105381985	105381985	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	42	4	23	0	19	19	0	0	0
PWP1	11137	bcgsc.ca	37	12	108104181	108104181	+	Splice_Site	SNP	G	G	T	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	171	11	153	0	0	0	0	0	0
FAM222A-AS1	84983	bcgsc.ca	37	12	110205788	110205788	+	RNA	SNP	G	G	T	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	36	6	47	0	0	0	0	0	0
CUX2	23316	ucsc.edu	37	12	111746253	111746253	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	32	4	51	0	0	0	0	0	0
DNAH10	196385	ucsc.edu	37	12	124323009	124323009	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	26	4	35	0	0	0	0	0	0
NCOR2	9612	ucsc.edu	37	12	124841221	124841221	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	46	5	44	0	88	88	0	0	0
RIMBP2	23504	bcgsc.ca	37	12	130926969	130926969	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	147	10	200	0	0	0	0	0	0
GALNT9	50614	ucsc.edu	37	12	132682409	132682409	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	33	4	35	0	21	21	0	0	0
N6AMT2	221143	bcgsc.ca	37	13	21303284	21303284	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	303	12	274	2	6	6	0	0	0
ATP12A	479	bcgsc.ca	37	13	25265130	25265130	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	165	9	219	2	0	0	0	0	0
MTUS2	23281	ucsc.edu;bcgsc.ca	37	13	29598882	29598882	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	112	12	89	0	0	0	0	0	0
FRY	10129	ucsc.edu	37	13	32811802	32811802	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	63	6	47	0	9	9	0	0	0
ELF1	1997	bcgsc.ca	37	13	41515248	41515248	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	222	12	228	1	49	49	0	0	0
SPERT	220082	ucsc.edu	37	13	46288306	46288306	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	21	4	41	0	0	0	0	0	0
VPS36	51028	bcgsc.ca	37	13	52997748	52997748	+	Silent	SNP	C	C	A	rs200690433	alternate_allele	TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	195	10	111	0	45	45	0	0	0
CTAGE11P	647288	ucsc.edu	37	13	75814465	75814465	+	RNA	SNP	G	G	T	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	42	4	65	0	0	0	0	0	0
EDNRB	1910	bcgsc.ca	37	13	78474785	78474785	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	57	6	51	0	0	0	0	0	0
SLC15A1	6564	bcgsc.ca	37	13	99374120	99374120	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	141	8	156	0	14	14	0	0	0
DOCK9	23348	ucsc.edu	37	13	99481726	99481726	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	41	4	43	0	29	29	0	0	0
TPP2	7174	bcgsc.ca	37	13	103275272	103275272	+	Silent	SNP	C	C	A	rs149008480	byfrequency;alternate_allele	TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	268	13	204	2	16	16	0	0	0
ARGLU1	55082	ucsc.edu	37	13	107196390	107196390	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	53	5	25	0	29	29	0	0	0
COL4A1	1282	ucsc.edu	37	13	110833684	110833684	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	51	5	73	0	208	208	0	0	0
ARHGEF7	8874	bcgsc.ca	37	13	111933012	111933012	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	159	9	186	0	1	1	0	0	0
F7	2155	ucsc.edu	37	13	113773073	113773073	+	Silent	SNP	G	G	T	rs145994193	byfrequency;alternate_allele	TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	38	4	45	0	0	0	0	0	0
GRTP1	79774	ucsc.edu	37	13	113980145	113980145	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	25	4	27	0	7	7	0	0	0
ARHGEF40	55701	bcgsc.ca	37	14	21543657	21543657	+	Silent	SNP	G	G	T	rs77764649	byfrequency;alternate_allele	TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	134	10	179	1	0	0	0	0	0
MYH6	4624	ucsc.edu	37	14	23871954	23871954	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	58	6	74	0	0	0	0	0	0
RNF31	55072	ucsc.edu	37	14	24617467	24617467	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	44	5	53	0	0	0	0	0	0
RNF31	55072	ucsc.edu	37	14	24620096	24620096	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	34	4	42	0	1	1	0	0	0
IPO4	79711	ucsc.edu	37	14	24651543	24651543	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	28	4	32	0	27	27	0	0	0
DNAAF2	55172	ucsc.edu	37	14	50100351	50100351	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	38	4	39	0	12	12	0	0	0
TRIM9	114088	ucsc.edu	37	14	51448800	51448800	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	38	5	42	0	2	2	0	0	0
NID2	22795	ucsc.edu;bcgsc.ca	37	14	52474674	52474674	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	66	7	39	0	1	1	0	0	0
COQ6	51004	ucsc.edu	37	14	74427959	74427959	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	48	5	43	0	14	14	0	0	0
ENTPD5	957	bcgsc.ca	37	14	74449813	74449813	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	254	11	269	1	5	5	0	0	0
FLRT2	23768	bcgsc.ca	37	14	86089367	86089367	+	Silent	SNP	G	G	T	rs147101710	byfrequency;alternate_allele	TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	161	9	202	1	3	3	0	0	0
CPSF2	53981	bcgsc.ca	37	14	92627523	92627523	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	143	8	114	1	48	48	0	0	0
LINC00521	256369	ucsc.edu	37	14	94464452	94464452	+	RNA	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	50	5	69	0	0	0	0	0	0
WDR25	79446	ucsc.edu	37	14	100992334	100992334	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	60	6	86	0	25	25	0	0	0
CDC42BPB	9578	bcgsc.ca	37	14	103412005	103412005	+	Silent	SNP	G	G	T	rs140036206	alternate_allele	TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	105	7	96	0	0	0	0	0	0
EXOC3L4	91828	ucsc.edu	37	14	103566803	103566803	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	39	4	33	0	6	6	0	0	0
BAG5	9529	bcgsc.ca	37	14	104027028	104027028	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	115	7	98	0	45	45	0	0	0
ZFYVE21	79038	ucsc.edu	37	14	104194101	104194101	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	39	4	72	1	49	49	0	0	0
HERC2P3	283755	ucsc.edu	37	15	20657753	20657753	+	RNA	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	61	7	82	0	1	1	0	0	0
TUBGCP5	114791	ucsc.edu	37	15	22853815	22853815	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	37	4	53	0	16	16	0	0	0
HERC2P2	400322	ucsc.edu	37	15	23300065	23300065	+	RNA	SNP	G	G	T	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	34	4	38	0	11	11	0	0	0
PAR4	0	ucsc.edu	37	15	25457126	25457126	+	RNA	SNP	G	G	T	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	31	4	45	0	0	0	0	0	0
OCA2	4948	ucsc.edu	37	15	28230312	28230312	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	30	4	42	0	0	0	0	0	0
HERC2	8924	ucsc.edu	37	15	28362205	28362205	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	42	4	60	0	27	27	0	0	0
HERC2	8924	bcgsc.ca	37	15	28387401	28387401	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	108	7	93	1	21	21	0	0	0
HERC2	8924	ucsc.edu	37	15	28389908	28389908	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	49	5	64	0	23	23	0	0	0
C15orf55	256646	ucsc.edu	37	15	34648390	34648390	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	41	4	63	0	0	0	0	0	0
THBS1	7057	ucsc.edu	37	15	39880827	39880827	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	48	5	50	0	81	81	0	0	0
SPTBN5	51332	ucsc.edu	37	15	42143316	42143316	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	33	4	31	0	5	5	0	0	0
SPTBN5	51332	bcgsc.ca	37	15	42155940	42155940	+	Silent	SNP	G	G	T	rs201500312	alternate_allele	TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	105	8	145	0	1	1	0	0	0
TTBK2	146057	ucsc.edu;bcgsc.ca	37	15	43038414	43038414	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	84	8	51	0	5	5	0	0	0
EPB42	2038	ucsc.edu	37	15	43499577	43499577	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	43	4	60	0	0	0	0	0	0
TGM7	116179	bcgsc.ca	37	15	43572110	43572110	+	Missense_Mutation	SNP	C	C	A	rs150635499	byfrequency;alternate_allele	TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	124	7	127	0	0	0	0	0	0
SPG11	80208	ucsc.edu	37	15	44862731	44862731	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	35	4	45	0	1	1	0	0	0
SEMA6D	80031	ucsc.edu	37	15	48055262	48055262	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	42	4	36	0	0	0	0	0	0
FBN1	2200	bcgsc.ca	37	15	48764763	48764763	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	298	13	293	0	20	20	0	0	0
FAM214A	56204	bcgsc.ca	37	15	52901599	52901599	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	378	16	329	0	9	9	0	0	0
CCPG1	9236	ucsc.edu	37	15	55651610	55651610	+	RNA	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	46	5	34	0	98	97	0	0	1
HERC1	8925	bcgsc.ca	37	15	64067421	64067421	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	240	12	243	2	2	2	0	0	0
PLEKHO2	80301	ucsc.edu	37	15	65157773	65157773	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	23	4	57	0	39	39	0	0	0
RASL12	51285	ucsc.edu	37	15	65357556	65357556	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	31	4	46	0	0	0	0	0	0
KBTBD13	390594	ucsc.edu	37	15	65370415	65370415	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	18	4	29	0	0	0	0	0	0
DENND4A	10260	ucsc.edu	37	15	65983371	65983371	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	42	5	37	0	15	15	0	0	0
NEO1	4756	bcgsc.ca	37	15	73562521	73562521	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	117	7	105	0	28	28	0	0	0
NEO1	4756	bcgsc.ca	37	15	73585760	73585760	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	358	15	380	0	50	50	0	0	0
NEO1	4756	ucsc.edu	37	15	73590706	73590706	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	61	6	59	0	84	84	0	0	0
PPCDC	60490	ucsc.edu	37	15	75341564	75341564	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	42	4	54	0	18	18	0	0	0
C15orf39	56905	ucsc.edu	37	15	75503183	75503183	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	41	4	43	0	42	42	0	0	0
ACSBG1	23205	bcgsc.ca	37	15	78475047	78475047	+	Silent	SNP	C	C	A	rs138877360		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	187	11	225	1	0	0	0	0	0
RASGRF1	5923	bcgsc.ca	37	15	79356857	79356857	+	Silent	SNP	C	C	A	rs139580872	alternate_allele	TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	222	9	203	0	0	0	0	0	0
WHAMM	123720	bcgsc.ca	37	15	83499372	83499372	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	289	12	257	0	23	23	0	0	0
MRPS11	64963	ucsc.edu	37	15	89011141	89011141	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	30	4	69	0	1	1	0	0	0
DET1	55070	bcgsc.ca	37	15	89074876	89074876	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	149	10	162	0	10	10	0	0	0
MESP2	145873	ucsc.edu	37	15	90320364	90320364	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	36	4	34	0	0	0	0	0	0
TTLL13	440307	bcgsc.ca	37	15	90799480	90799480	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	99	7	128	0	0	0	0	0	0
UNC45A	55898	ucsc.edu	37	15	91496169	91496169	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	38	4	48	0	0	0	0	0	0
IGF1R	3480	ucsc.edu	37	15	99452065	99452065	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	33	4	43	0	34	34	0	0	0
SYNM	23336	ucsc.edu	37	15	99671501	99671501	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	32	4	33	0	0	0	0	0	0
DNM1P46	196968	ucsc.edu	37	15	100332040	100332040	+	RNA	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	42	4	58	0	0	0	0	0	0
LRRK1	79705	ucsc.edu	37	15	101549266	101549266	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	36	4	50	0	0	0	0	0	0
TMEM8A	58986	ucsc.edu	37	16	426548	426548	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	38	5	62	0	1	1	0	0	0
CACNA1H	8912	ucsc.edu	37	16	1263928	1263928	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	23	4	31	0	0	0	0	0	0
ZNF598	90850	ucsc.edu	37	16	2049733	2049733	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	37	4	53	0	15	15	0	0	0
ZNF598	90850	ucsc.edu	37	16	2051665	2051665	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	42	4	51	0	12	12	0	0	0
TSC2	7249	hgsc.bcm.edu;bcgsc.ca	37	16	2129191	2129191	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	101	7	149	0	0	0	0	0	0
ABCA3	21	bcgsc.ca	37	16	2373673	2373673	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	440	15	490	2	33	33	0	0	0
CCNF	899	ucsc.edu	37	16	2506692	2506692	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	48	5	77	1	0	0	0	0	0
SRRM2	23524	bcgsc.ca	37	16	2814154	2814154	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	204	11	203	0	58	58	0	0	0
ANKS3	124401	ucsc.edu	37	16	4751435	4751435	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	32	5	37	0	0	0	0	0	0
TMEM186	25880	bcgsc.ca	37	16	8890029	8890029	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	89	6	111	0	24	24	0	0	0
ERCC4	2072	bcgsc.ca	37	16	14041767	14041767	+	Silent	SNP	C	C	A	rs150920741	alternate_allele	TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	129	7	170	1	6	6	0	0	0
MPV17L	255027	ucsc.edu	37	16	15494714	15494714	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	36	4	26	0	0	0	0	0	0
ITPRIPL2	162073	ucsc.edu	37	16	19126782	19126782	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	54	5	85	0	23	23	0	0	0
DNAH3	55567	bcgsc.ca	37	16	21147761	21147761	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	149	8	140	0	0	0	0	0	0
CDR2	1039	bcgsc.ca	37	16	22360668	22360668	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	199	10	216	0	72	72	0	0	0
RBBP6	5930	ucsc.edu;bcgsc.ca	37	16	24576168	24576168	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	31	6	23	0	4	4	0	0	0
CCDC101	112869	ucsc.edu	37	16	28601673	28601673	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	27	4	40	0	32	32	0	0	0
RRN3P2	653390	ucsc.edu	37	16	29110458	29110458	+	RNA	SNP	T	T	C	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	88	9	63	1	31	0	31	0	0
MVP	9961	ucsc.edu	37	16	29847044	29847044	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	28	4	46	0	184	184	0	0	0
MVP	9961	bcgsc.ca	37	16	29856131	29856131	+	Missense_Mutation	SNP	G	G	T	rs3764944	byfrequency;alternate_allele	TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	151	9	193	0	282	282	0	0	0
ASPHD1	253982	ucsc.edu	37	16	29912439	29912439	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	36	4	49	0	2	2	0	0	0
DOC2A	8448	ucsc.edu	37	16	30017653	30017653	+	Splice_Site	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	30	4	57	0	0	0	0	0	0
SRCAP	10847	ucsc.edu	37	16	30750379	30750379	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	50	5	78	0	64	64	0	0	0
FBXL19	54620	ucsc.edu	37	16	30939823	30939823	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	30	4	36	0	3	3	0	0	0
PYCARD	29108	bcgsc.ca	37	16	31213082	31213082	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	100	8	117	1	54	54	0	0	0
FAM192A	80011	ucsc.edu	37	16	57188358	57188358	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	49	5	29	0	99	99	0	0	0
KATNB1	10300	ucsc.edu	37	16	57771166	57771166	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	53	5	57	0	16	16	0	0	0
CNGB1	1258	ucsc.edu	37	16	57945779	57945779	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	37	4	51	0	0	0	0	0	0
USB1	79650	bcgsc.ca	37	16	58036493	58036493	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	87	7	107	1	35	35	0	0	0
CNOT1	23019	ucsc.edu	37	16	58566224	58566224	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	45	5	45	0	84	84	0	0	0
CNOT1	23019	bcgsc.ca	37	16	58619388	58619388	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	118	9	91	0	12	12	0	0	0
CDH5	1003	ucsc.edu;bcgsc.ca	37	16	66420799	66420799	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	61	7	59	0	10	10	0	0	0
CA7	766	ucsc.edu	37	16	66886614	66886614	+	Splice_Site	SNP	G	G	T	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	45	5	59	0	0	0	0	0	0
FHOD1	29109	ucsc.edu	37	16	67270472	67270472	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	25	4	46	0	0	0	0	0	0
KCTD19	146212	bcgsc.ca	37	16	67327781	67327781	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	250	11	293	0	0	0	0	0	0
SLC7A6OS	84138	ucsc.edu	37	16	68344277	68344277	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	40	4	43	0	8	8	0	0	0
DDX19B	11269	ucsc.edu	37	16	70346560	70346560	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	41	4	23	0	1	1	0	0	0
CALB2	794	bcgsc.ca	37	16	71417895	71417895	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	163	10	195	1	0	0	0	0	0
ZNF19	7567	ucsc.edu	37	16	71512232	71512232	+	Missense_Mutation	SNP	G	G	T	rs202223719	alternate_allele	TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	44	5	58	0	0	0	0	0	0
ZFHX3	463	bcgsc.ca	37	16	72993432	72993432	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	147	9	160	0	5	5	0	0	0
MLKL	197259	bcgsc.ca	37	16	74725268	74725268	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	472	18	403	0	11	11	0	0	0
MLKL	197259	bcgsc.ca	37	16	74725283	74725283	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	403	17	369	2	9	9	0	0	0
BCAR1	9564	ucsc.edu	37	16	75269035	75269035	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	50	5	65	0	106	106	0	0	0
VAT1L	57687	broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	78011538	78011538	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	59	10	56	0	19	12	7	0	0
SLC38A8	146167	bcgsc.ca	37	16	84066960	84066960	+	Missense_Mutation	SNP	C	C	A	rs142152244	alternate_allele	TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	208	10	286	0	0	0	0	0	0
ADAD2	161931	ucsc.edu	37	16	84228076	84228076	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	28	4	37	0	0	0	0	0	0
ADAD2	161931	ucsc.edu	37	16	84229960	84229960	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	63	6	100	0	0	0	0	0	0
CA5A	763	ucsc.edu	37	16	87936070	87936070	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	69	6	47	0	2	2	0	0	0
APRT	353	ucsc.edu	37	16	88876836	88876836	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	37	4	61	0	0	0	0	0	0
GALNS	2588	ucsc.edu	37	16	88902642	88902642	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	42	4	45	0	11	11	0	0	0
ANKRD11	29123	ucsc.edu	37	16	89348521	89348521	+	Silent	SNP	G	G	T	rs199761925		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	42	4	53	0	21	21	0	0	0
VPS9D1	9605	ucsc.edu	37	16	89777779	89777779	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	30	4	31	0	29	29	0	0	0
GLOD4	51031	ucsc.edu	37	17	673368	673368	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	44	5	54	0	89	89	0	0	0
RNMTL1	55178	ucsc.edu	37	17	685917	685917	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	47	5	52	0	12	12	0	0	0
SMG6	23293	ucsc.edu	37	17	1968920	1968920	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	53	5	62	0	19	19	0	0	0
USP6	9098	bcgsc.ca	37	17	5035720	5035720	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	266	16	337	1	0	0	0	0	0
DHX33	56919	ucsc.edu	37	17	5357237	5357237	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	41	4	56	0	4	4	0	0	0
AIPL1	23746	ucsc.edu	37	17	6329948	6329948	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	52	5	56	0	0	0	0	0	0
TEKT1	83659	bcgsc.ca	37	17	6703404	6703404	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	274	11	261	2	0	0	0	0	0
NEURL4	84461	bcgsc.ca	37	17	7221470	7221470	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	85	7	142	0	16	16	0	0	0
SENP3	26168	ucsc.edu	37	17	7466458	7466458	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	32	4	26	0	29	29	0	0	0
TP53	7157	ucsc.edu	37	17	7579389	7579389	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	54	6	118	0	56	56	0	0	0
DNAH2	146754	bcgsc.ca	37	17	7721337	7721337	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	156	8	188	0	6	6	0	0	0
KCNAB3	9196	bcgsc.ca	37	17	7831121	7831121	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	193	10	244	0	0	0	0	0	0
PFAS	5198	bcgsc.ca	37	17	8159686	8159686	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	140	8	172	0	14	14	0	0	0
PFAS	5198	bcgsc.ca	37	17	8172152	8172152	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	79	6	91	0	16	16	0	0	0
ARHGEF15	22899	ucsc.edu	37	17	8218483	8218483	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	39	4	49	0	1	1	0	0	0
MYH10	4628	bcgsc.ca	37	17	8409745	8409745	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	156	9	139	0	32	32	0	0	0
MYH13	8735	bcgsc.ca	37	17	10247205	10247205	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	132	10	147	0	0	0	0	0	0
MYH1	4619	bcgsc.ca	37	17	10402081	10402081	+	Missense_Mutation	SNP	C	C	A	rs146728905	alternate_allele	TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	245	10	250	1	3	3	0	0	0
MYH2	4620	bcgsc.ca	37	17	10441020	10441020	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	226	10	196	0	0	0	0	0	0
MPRIP	23164	bcgsc.ca	37	17	17079797	17079797	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	147	9	164	0	91	91	0	0	0
PEMT	10400	ucsc.edu	37	17	17409121	17409121	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	34	4	43	0	197	197	0	0	0
PEMT	10400	ucsc.edu	37	17	17415869	17415869	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	38	4	56	0	96	96	0	0	0
MYO15A	51168	broad.mit.edu	37	17	18025392	18025392	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	88	8	125	0	0	0	0	0	0
SLC5A10	125206	ucsc.edu	37	17	18923105	18923105	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	32	4	39	0	3	3	0	0	0
SLC47A1	55244	bcgsc.ca	37	17	19458615	19458615	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	240	13	230	0	0	0	0	0	0
TNFAIP1	7126	ucsc.edu	37	17	26669389	26669389	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	33	4	56	0	33	33	0	0	0
TRAF4	9618	ucsc.edu	37	17	27075399	27075399	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	35	4	49	0	50	50	0	0	0
ERAL1	26284	ucsc.edu	37	17	27182306	27182306	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	76	7	102	0	31	31	0	0	0
ATAD5	79915	bcgsc.ca	37	17	29220888	29220888	+	Missense_Mutation	SNP	G	G	T	rs201517179	alternate_allele	TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	221	11	167	1	2	2	0	0	0
CCL3	6348	bcgsc.ca	37	17	34416069	34416069	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	207	12	196	0	7	7	0	0	0
MRM1	79922	ucsc.edu;bcgsc.ca	37	17	34958699	34958699	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	33	6	46	0	4	4	0	0	0
AATF	26574	ucsc.edu	37	17	35345877	35345877	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	56	7	55	0	48	48	0	0	0
FBXO47	494188	bcgsc.ca	37	17	37113472	37113472	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	268	12	171	0	0	0	0	0	0
CASC3	22794	broad.mit.edu	37	17	38324637	38324637	+	Silent	SNP	C	C	G	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	104	4	114	0	37	37	0	0	0
KRT16	3868	ucsc.edu	37	17	39767955	39767955	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	37	5	39	0	0	0	0	0	0
LEPREL4	10609	ucsc.edu	37	17	39967183	39967183	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	37	4	50	0	55	55	0	0	0
ATP6V0A1	535	bcgsc.ca	37	17	40659537	40659537	+	Splice_Site	SNP	G	G	T	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	125	9	136	1	2	2	0	0	0
AOC2	314	bcgsc.ca	37	17	41002174	41002174	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	293	13	273	0	2	2	0	0	0
NXPH3	11248	ucsc.edu	37	17	47656249	47656249	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	53	5	72	0	1	1	0	0	0
MPO	4353	ucsc.edu	37	17	56356994	56356994	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	44	4	51	0	0	0	0	0	0
BZRAP1	9256	ucsc.edu	37	17	56388089	56388089	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	39	4	58	1	10	10	0	0	0
RNF43	54894	bcgsc.ca	37	17	56448306	56448306	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	89	6	93	0	4	4	0	0	0
SEPT4	5414	ucsc.edu	37	17	56603656	56603656	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	31	4	43	0	6	6	0	0	0
ACE	1636	bcgsc.ca	37	17	61557165	61557165	+	Missense_Mutation	SNP	G	G	T	rs12720754	byfrequency;alternate_allele	TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	98	6	97	0	3	3	0	0	0
ABCA8	10351	ucsc.edu	37	17	66883199	66883199	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	38	5	34	0	0	0	0	0	0
ABCA10	10349	ucsc.edu;bcgsc.ca	37	17	67189684	67189684	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	61	7	49	0	0	0	0	0	0
ABCA5	23461	bcgsc.ca	37	17	67283804	67283804	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	196	10	154	1	1	1	0	0	0
COG1	9382	bcgsc.ca	37	17	71197421	71197421	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	226	9	229	1	32	32	0	0	0
RAB37	326624	bcgsc.ca	37	17	72736918	72736918	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	281	13	324	0	0	0	0	0	0
KIAA0195	9772	bcgsc.ca	37	17	73484907	73484907	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	98	7	178	1	20	20	0	0	0
EVPL	2125	ucsc.edu	37	17	74004370	74004370	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	40	4	43	0	29	29	0	0	0
TMC6	11322	ucsc.edu	37	17	76122887	76122887	+	Silent	SNP	G	G	T	rs145198906	alternate_allele	TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	39	5	48	0	41	41	0	0	0
USP36	57602	ucsc.edu	37	17	76798495	76798495	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	32	4	24	0	20	20	0	0	0
SLC26A11	284129	ucsc.edu	37	17	78220404	78220404	+	Missense_Mutation	SNP	C	C	A	rs140113501	alternate_allele	TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	44	4	43	0	18	18	0	0	0
RPTOR	57521	bcgsc.ca	37	17	78519590	78519590	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	201	10	177	0	0	0	0	0	0
RPTOR	57521	ucsc.edu	37	17	78914300	78914300	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	35	5	32	0	0	0	0	0	0
ARHGDIA	396	ucsc.edu	37	17	79826919	79826919	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	51	5	64	0	327	327	0	0	0
PCYT2	5833	ucsc.edu	37	17	79865714	79865714	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	41	4	78	0	14	14	0	0	0
SIRT7	51547	ucsc.edu;bcgsc.ca	37	17	79873336	79873336	+	Missense_Mutation	SNP	G	G	T	rs200359843	alternate_allele	TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	39	5	37	0	9	9	0	0	0
NOTUM	147111	ucsc.edu	37	17	79914946	79914946	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	34	4	40	0	0	0	0	0	0
FASN	2194	ucsc.edu	37	17	80040427	80040427	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	44	4	61	0	26	26	0	0	0
WDR45B	56270	ucsc.edu	37	17	80579656	80579656	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	50	6	54	0	73	73	0	0	0
TUBB6	84617	bcgsc.ca	37	18	12325448	12325448	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	139	9	169	0	51	51	0	0	0
NPC1	4864	ucsc.edu;bcgsc.ca	37	18	21114473	21114473	+	Silent	SNP	C	C	A	rs150602021	byfrequency;alternate_allele	TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	48	6	53	0	56	56	0	0	0
LAMA3	3909	bcgsc.ca	37	18	21395476	21395476	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	147	9	135	0	8	8	0	0	0
KLHL14	57565	bcgsc.ca	37	18	30350196	30350196	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	161	8	225	1	1	1	0	0	0
FHOD3	80206	ucsc.edu	37	18	34320643	34320643	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	39	4	53	0	30	30	0	0	0
FHOD3	80206	ucsc.edu	37	18	34320646	34320646	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	42	4	57	0	31	31	0	0	0
CELF4	56853	ucsc.edu	37	18	35145485	35145485	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	42	4	71	0	0	0	0	0	0
KATNAL2	83473	bcgsc.ca	37	18	44589731	44589731	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	98	8	91	0	0	0	0	0	0
SMAD2	4087	ucsc.edu	37	18	45368227	45368227	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	80	9	67	1	58	58	0	0	0
MYO5B	4645	bcgsc.ca	37	18	47398600	47398600	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	408	14	474	1	0	0	0	0	0
MYO5B	4645	ucsc.edu	37	18	47455927	47455927	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	39	4	27	0	0	0	0	0	0
MRO	83876	bcgsc.ca	37	18	48331550	48331550	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	87	8	101	0	0	0	0	0	0
ZNF516	9658	ucsc.edu	37	18	74154840	74154840	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	43	4	52	0	5	5	0	0	0
MIER2	54531	ucsc.edu	37	19	307395	307395	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	28	4	43	0	26	26	0	0	0
PRTN3	5657	ucsc.edu	37	19	847816	847816	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	25	4	36	0	0	0	0	0	0
CREB3L3	84699	bcgsc.ca	37	19	4157210	4157210	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	130	9	185	0	0	0	0	0	0
CCDC94	55702	ucsc.edu	37	19	4258381	4258381	+	Missense_Mutation	SNP	G	G	T	rs138383919	alternate_allele	TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	27	4	29	0	38	38	0	0	0
UBXN6	80700	bcgsc.ca	37	19	4453969	4453969	+	Silent	SNP	G	G	T	rs200291730	alternate_allele	TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	159	9	270	0	184	184	0	0	0
ACSBG2	81616	ucsc.edu	37	19	6141560	6141560	+	Silent	SNP	T	T	C	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	39	4	48	0	0	0	0	0	0
TRIP10	9322	bcgsc.ca	37	19	6750601	6750601	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	80	7	108	0	49	49	0	0	0
INSR	3643	ucsc.edu	37	19	7166387	7166387	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	34	4	47	0	9	9	0	0	0
CAMSAP3	57662	ucsc.edu	37	19	7676579	7676579	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	31	5	30	0	0	0	0	0	0
FBN3	84467	ucsc.edu	37	19	8191671	8191671	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	63	6	74	0	0	0	0	0	0
CERS4	79603	bcgsc.ca	37	19	8322847	8322847	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	160	9	169	0	44	44	0	0	0
MUC16	94025	bcgsc.ca	37	19	9049259	9049259	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	225	11	205	1	1	1	0	0	0
MUC16	94025	ucsc.edu;bcgsc.ca	37	19	9084301	9084301	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	69	7	70	0	0	0	0	0	0
PIN1	5300	ucsc.edu	37	19	9958728	9958728	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	53	5	64	0	71	71	0	0	0
DNMT1	1786	bcgsc.ca	37	19	10250861	10250861	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	91	8	133	0	26	26	0	0	0
ICAM1	3383	ucsc.edu	37	19	10381853	10381853	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	45	4	73	0	175	175	0	0	0
SMARCA4	6597	ucsc.edu	37	19	11145752	11145752	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	34	4	32	0	134	134	0	0	0
C19orf80	55908	ucsc.edu	37	19	11350381	11350381	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	47	5	61	0	2	2	0	0	0
DHPS	1725	bcgsc.ca	37	19	12791044	12791044	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	292	15	348	0	59	59	0	0	0
CYP4F3	4051	ucsc.edu	37	19	15754734	15754734	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	36	4	35	0	0	0	0	0	0
SLC35E1	79939	bcgsc.ca	37	19	16664524	16664524	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	300	13	263	3	64	64	0	0	0
USHBP1	83878	ucsc.edu;bcgsc.ca	37	19	17370140	17370140	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	50	7	54	0	1	1	0	0	0
UNC13A	23025	bcgsc.ca	37	19	17763482	17763482	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	384	15	448	1	0	0	0	0	0
KIAA1683	80726	bcgsc.ca	37	19	18377013	18377013	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	113	8	131	0	0	0	0	0	0
DDX49	54555	ucsc.edu	37	19	19030662	19030662	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	25	4	36	0	0	0	0	0	0
TM6SF2	53345	bcgsc.ca	37	19	19380545	19380545	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	230	12	296	0	0	0	0	0	0
CILP2	148113	ucsc.edu	37	19	19654061	19654061	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	38	4	68	0	0	0	0	0	0
ZNF738	148203	ucsc.edu	37	19	21544602	21544602	+	RNA	SNP	G	G	T	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	45	5	32	0	3	3	0	0	0
ZNF536	9745	bcgsc.ca	37	19	31025864	31025864	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	99	7	129	0	0	0	0	0	0
WDR62	284403	ucsc.edu	37	19	36595560	36595560	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	45	4	58	0	1	1	0	0	0
ZNF345	25850	bcgsc.ca	37	19	37367785	37367785	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	119	8	68	0	4	4	0	0	0
FBXO17	115290	bcgsc.ca	37	19	39433331	39433331	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	105	7	150	0	30	30	0	0	0
SERTAD1	29950	ucsc.edu	37	19	40929052	40929052	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	21	4	20	0	43	43	0	0	0
SPTBN4	57731	bcgsc.ca	37	19	41077930	41077930	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	572	24	624	1	0	0	0	0	0
RAB4B	53916	ucsc.edu	37	19	41286334	41286334	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	36	4	25	0	34	34	0	0	0
ARHGEF1	9138	ucsc.edu	37	19	42396683	42396683	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	44	6	73	0	0	0	0	0	0
ATP1A3	478	bcgsc.ca	37	19	42492254	42492254	+	Missense_Mutation	SNP	C	C	A	rs201573515	alternate_allele	TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	95	7	105	0	1	1	0	0	0
GRIK5	2901	ucsc.edu	37	19	42510815	42510815	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	41	4	49	0	9	9	0	0	0
PRR19	284338	ucsc.edu;bcgsc.ca	37	19	42813885	42813885	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	121	12	170	1	1	1	0	0	0
PSG2	5670	broad.mit.edu	37	19	43576061	43576061	+	Missense_Mutation	SNP	C	C	T	rs1135795		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	236	10	262	0	0	0	0	0	0
ZNF404	342908	broad.mit.edu;bcgsc.ca	37	19	44378055	44378055	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	331	14	250	0	1	1	0	0	0
RSPH6A	81492	bcgsc.ca	37	19	46313908	46313908	+	Silent	SNP	G	G	T	rs147742600	alternate_allele	TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	178	10	193	1	0	0	0	0	0
EHD2	30846	ucsc.edu	37	19	48229179	48229179	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	41	4	46	0	103	103	0	0	0
CARD8	22900	ucsc.edu	37	19	48734068	48734068	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	48	5	82	0	6	6	0	0	0
RPL18	6141	ucsc.edu	37	19	49119186	49119186	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	30	4	31	0	1606	1606	0	0	0
SLC6A16	28968	ucsc.edu	37	19	49793913	49793913	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	37	4	38	0	3	3	0	0	0
TEAD2	8463	ucsc.edu	37	19	49844671	49844671	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	64	6	68	0	71	71	0	0	0
SCAF1	58506	ucsc.edu	37	19	50157674	50157674	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	35	4	39	0	2	2	0	0	0
MYH14	79784	ucsc.edu	37	19	50728877	50728877	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	35	4	32	0	9	9	0	0	0
MYH14	79784	bcgsc.ca	37	19	50752994	50752994	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	136	9	176	0	9	9	0	0	0
MYH14	79784	ucsc.edu	37	19	50763949	50763949	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	36	4	41	0	0	0	0	0	0
EMC10	284361	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	50981244	50981244	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	101	22	132	0	0	0	0	0	0
ZNF614	80110	hgsc.bcm.edu	37	19	52521662	52521662	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	169	9	208	1	6	6	0	0	0
ZNF610	162963	ucsc.edu	37	19	52869312	52869312	+	Silent	SNP	C	C	A	rs162120	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes;alternate_allele	TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	42	4	42	0	0	0	0	0	0
LENG8	114823	ucsc.edu	37	19	54966717	54966717	+	Silent	SNP	C	C	A	rs150470357	alternate_allele	TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	34	4	31	0	10	10	0	0	0
NLRP7	199713	ucsc.edu	37	19	55447698	55447698	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	72	7	109	0	0	0	0	0	0
UBE2S	27338	ucsc.edu	37	19	55915800	55915800	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	51	4	59	1	18	18	0	0	0
PEG3	5178	bcgsc.ca	37	19	57327327	57327327	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	140	9	126	0	2	2	0	0	0
ZSCAN4	201516	ucsc.edu;bcgsc.ca	37	19	58189887	58189887	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	74	9	82	0	0	0	0	0	0
ZNF497	162968	ucsc.edu	37	19	58868508	58868508	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	27	4	38	0	3	3	0	0	0
PXDN	7837	ucsc.edu	37	2	1665890	1665890	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	19	4	26	0	60	60	0	0	0
KIDINS220	57498	ucsc.edu	37	2	8890450	8890450	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	37	4	49	0	33	33	0	0	0
FAM49A	81553	ucsc.edu	37	2	16736356	16736356	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	52	5	63	0	7	7	0	0	0
SDC1	6382	bcgsc.ca	37	2	20403757	20403757	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	155	13	203	0	90	90	0	0	0
DNAJC27	51277	ucsc.edu	37	2	25194707	25194707	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	34	4	34	0	3	3	0	0	0
OTOF	9381	ucsc.edu	37	2	26699045	26699045	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	40	4	56	0	0	0	0	0	0
IFT172	26160	bcgsc.ca	37	2	27671846	27671846	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	182	9	202	0	23	23	0	0	0
CAPN13	92291	ucsc.edu	37	2	30977218	30977218	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	31	4	31	0	0	0	0	0	0
CEBPZ	10153	ucsc.edu	37	2	37438988	37438988	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	35	4	32	0	1	1	0	0	0
SRBD1	55133	bcgsc.ca	37	2	45829106	45829106	+	Missense_Mutation	SNP	C	C	A	rs190074005	alternate_allele	TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	281	13	240	0	3	3	0	0	0
ASPRV1	151516	bcgsc.ca	37	2	70188562	70188562	+	Missense_Mutation	SNP	C	C	A	rs148290351	byfrequency;alternate_allele	TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	67	6	81	0	1	1	0	0	0
DYSF	8291	bcgsc.ca	37	2	71797362	71797362	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	103	7	111	1	0	0	0	0	0
TRABD2A	129293	bcgsc.ca	37	2	85097468	85097468	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	196	11	213	0	8	8	0	0	0
USP39	10713	bcgsc.ca	37	2	85850772	85850772	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	406	14	401	2	1	1	0	0	0
SFTPB	6439	ucsc.edu	37	2	85890608	85890608	+	Missense_Mutation	SNP	G	G	T	rs35076740	alternate_allele	TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	34	4	39	0	0	0	0	0	0
GNLY	10578	ucsc.edu	37	2	85922455	85922455	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	52	5	47	0	4	4	0	0	0
SNRNP200	23020	bcgsc.ca	37	2	96964100	96964100	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	144	9	151	1	41	41	0	0	0
SNRNP200	23020	bcgsc.ca	37	2	96965144	96965144	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	154	8	132	0	29	29	0	0	0
FER1L5	90342	ucsc.edu	37	2	97368772	97368772	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	33	4	30	0	0	0	0	0	0
LMAN2L	81562	bcgsc.ca	37	2	97377601	97377601	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	78	7	72	0	0	0	0	0	0
CNNM4	26504	bcgsc.ca	37	2	97464907	97464907	+	Missense_Mutation	SNP	C	C	A	rs142888878	alternate_allele	TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	115	9	150	0	3	3	0	0	0
VWA3B	200403	ucsc.edu	37	2	98709582	98709582	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	51	6	56	1	0	0	0	0	0
RALB	5899	ucsc.edu	37	2	121050745	121050745	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	49	5	49	0	76	76	0	0	0
MKI67IP	84365	hgsc.bcm.edu	37	2	122488590	122488590	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	160	8	125	0	45	45	0	0	0
BIN1	274	ucsc.edu	37	2	127821183	127821183	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	28	4	35	0	121	121	0	0	0
IWS1	55677	bcgsc.ca	37	2	128250885	128250885	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	112	8	94	1	40	40	0	0	0
MYO7B	4648	ucsc.edu	37	2	128378023	128378023	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	42	5	61	0	0	0	0	0	0
MYO7B	4648	ucsc.edu	37	2	128393305	128393305	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	17	4	17	0	0	0	0	0	0
RIF1	55183	bcgsc.ca	37	2	152322624	152322624	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	93	8	92	0	0	0	0	0	0
NEB	4703	bcgsc.ca	37	2	152410486	152410486	+	Silent	SNP	G	G	T	rs200333206	alternate_allele	TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	283	11	243	0	0	0	0	0	0
NEB	4703	ucsc.edu	37	2	152426705	152426705	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	39	4	39	1	0	0	0	0	0
NEB	4703	bcgsc.ca	37	2	152521924	152521924	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	68	6	51	0	0	0	0	0	0
ACVR1	90	bcgsc.ca	37	2	158655956	158655956	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	114	9	94	1	21	21	0	0	0
TANC1	85461	bcgsc.ca	37	2	160050974	160050974	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	97	8	87	0	11	11	0	0	0
FAP	2191	ucsc.edu	37	2	163031474	163031474	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	62	6	65	0	0	0	0	0	0
SCN1A	6323	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	166904262	166904262	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	161	19	106	2	0	0	0	0	0
TTC30A	92104	bcgsc.ca	37	2	178482878	178482878	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	96	8	137	0	9	9	0	0	0
OSBPL6	114880	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	179247924	179247924	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	74	25	85	1	0	0	0	0	0
TTN	7273	ucsc.edu	37	2	179549649	179549649	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	36	4	23	0	0	0	0	0	0
COL3A1	1281	bcgsc.ca	37	2	189868136	189868136	+	Splice_Site	SNP	G	G	T	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	74	8	53	0	0	0	0	0	0
ASNSD1	54529	bcgsc.ca	37	2	190531029	190531029	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	202	11	162	0	4	4	0	0	0
HECW2	57520	ucsc.edu	37	2	197182043	197182043	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	43	5	23	0	6	6	0	0	0
RFTN2	130132	bcgsc.ca	37	2	198511301	198511301	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	188	9	153	0	1	1	0	0	0
PLCL1	5334	ucsc.edu	37	2	198950956	198950956	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	37	4	35	0	0	0	0	0	0
ABI2	10152	ucsc.edu	37	2	204255840	204255840	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	50	5	54	0	25	25	0	0	0
RAPH1	65059	broad.mit.edu	37	2	204304841	204304841	+	Silent	SNP	G	G	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	152	5	185	1	15	15	0	0	0
VIL1	7429	ucsc.edu;bcgsc.ca	37	2	219300066	219300066	+	Silent	SNP	C	C	A	rs146226771	byfrequency;alternate_allele	TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	80	8	103	0	0	0	0	0	0
BCS1L	617	bcgsc.ca	37	2	219525948	219525948	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	216	10	237	0	37	37	0	0	0
STK36	27148	bcgsc.ca	37	2	219563344	219563344	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	327	15	327	0	29	29	0	0	0
HJURP	55355	bcgsc.ca	37	2	234752911	234752911	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	152	9	176	0	0	0	0	0	0
COL6A3	1293	ucsc.edu;bcgsc.ca	37	2	238283362	238283362	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	73	8	100	0	17	17	0	0	0
SCLY	51540	bcgsc.ca	37	2	239003070	239003070	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	199	11	182	0	0	0	0	0	0
SEPT2	4735	bcgsc.ca	37	2	242277178	242277178	+	Silent	SNP	G	G	C	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	82	4	101	0	324	324	0	0	0
DTYMK	1841	ucsc.edu	37	2	242615558	242615558	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	39	4	45	0	54	54	0	0	0
D2HGDH	728294	ucsc.edu	37	2	242681953	242681953	+	Missense_Mutation	SNP	C	C	A	rs201926349	alternate_allele	TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	66	6	90	0	12	12	0	0	0
SIRPD	128646	bcgsc.ca	37	20	1532596	1532596	+	Silent	SNP	G	G	T	rs144302855	alternate_allele	TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	117	10	82	0	0	0	0	0	0
JAG1	182	ucsc.edu;bcgsc.ca	37	20	10625814	10625814	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	61	7	105	0	48	48	0	0	0
ZNF133	7692	ucsc.edu	37	20	18286992	18286992	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	41	5	48	0	4	4	0	0	0
ID1	3397	ucsc.edu	37	20	30193869	30193869	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	36	4	46	0	78	78	0	0	0
TM9SF4	9777	broad.mit.edu;bcgsc.ca	37	20	30723909	30723909	+	Silent	SNP	A	A	G	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	102	5	77	0	45	43	2	0	0
TM9SF4	9777	ucsc.edu	37	20	30737520	30737520	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	40	4	57	0	53	53	0	0	0
NCOA6	23054	bcgsc.ca	37	20	33338043	33338043	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	136	9	201	1	6	6	0	0	0
PTPRT	11122	bcgsc.ca	37	20	41306549	41306549	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	130	9	161	1	0	0	0	0	0
SRSF6	6431	bcgsc.ca	37	20	42089566	42089566	+	Missense_Mutation	SNP	C	C	A	rs146307833	alternate_allele	TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	161	9	137	0	86	86	0	0	0
IFT52	51098	bcgsc.ca	37	20	42265804	42265804	+	Missense_Mutation	SNP	G	G	T	rs145627647	byfrequency;alternate_allele	TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	183	9	124	0	48	48	0	0	0
WFDC5	149708	ucsc.edu	37	20	43739287	43739287	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	37	4	64	1	0	0	0	0	0
RBPJL	11317	ucsc.edu	37	20	43944977	43944977	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	36	4	53	0	0	0	0	0	0
ARFGEF2	10564	bcgsc.ca	37	20	47648639	47648639	+	Missense_Mutation	SNP	G	G	T	rs201225495	alternate_allele	TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	206	11	174	0	14	14	0	0	0
ATP9A	10079	ucsc.edu	37	20	50217817	50217817	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	39	4	41	0	42	42	0	0	0
EEF1A2	1917	bcgsc.ca	37	20	62121863	62121863	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	65	6	73	0	0	0	0	0	0
ANKRD30BP2	149992	broad.mit.edu	37	21	14414855	14414855	+	RNA	SNP	A	A	G	rs201948955		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	82	6	55	2	0	0	0	0	0
IFNAR1	3454	bcgsc.ca	37	21	34721524	34721524	+	Missense_Mutation	SNP	C	C	A	rs201281365	alternate_allele	TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	187	10	107	0	86	86	0	0	0
DSCR6	53820	ucsc.edu	37	21	38390297	38390297	+	Silent	SNP	C	C	A	rs138756839	byfrequency;alternate_allele	TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	52	5	47	0	1	1	0	0	0
UMODL1	89766	bcgsc.ca	37	21	43547923	43547923	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	123	8	96	0	0	0	0	0	0
PDE9A	5152	ucsc.edu	37	21	44179144	44179144	+	Silent	SNP	C	C	A	rs148908136	byfrequency;alternate_allele	TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	40	4	55	0	15	15	0	0	0
COL6A2	1292	ucsc.edu	37	21	47537366	47537366	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	51	5	49	0	0	0	0	0	0
GAB4	128954	ucsc.edu	37	22	17488988	17488988	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	28	4	21	0	0	0	0	0	0
DGCR8	54487	bcgsc.ca	37	22	20073955	20073955	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	196	11	235	0	11	11	0	0	0
ZNF74	7625	bcgsc.ca	37	22	20754989	20754989	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	139	9	144	0	7	7	0	0	0
ZNF280A	129025	broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	22869234	22869234	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	94	15	102	0	0	0	0	0	0
RAB36	9609	ucsc.edu	37	22	23492295	23492295	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	44	4	29	0	19	19	0	0	0
SUSD2	56241	ucsc.edu	37	22	24582358	24582358	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	39	4	72	0	3	3	0	0	0
SFI1	9814	ucsc.edu	37	22	32011096	32011096	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	44	4	68	1	11	11	0	0	0
MYH9	4627	ucsc.edu;bcgsc.ca	37	22	36701102	36701102	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	95	9	111	0	237	237	0	0	0
MYH9	4627	bcgsc.ca	37	22	36714304	36714304	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	267	11	297	0	160	160	0	0	0
TMPRSS6	164656	ucsc.edu	37	22	37485640	37485640	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	46	5	39	0	1	1	0	0	0
PICK1	9463	ucsc.edu	37	22	38471047	38471047	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	42	4	58	0	29	29	0	0	0
SMCR7L	54471	ucsc.edu	37	22	39909679	39909679	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	42	4	52	0	23	23	0	0	0
MKL1	57591	ucsc.edu	37	22	40815024	40815024	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	27	4	51	0	20	20	0	0	0
MKL1	57591	bcgsc.ca	37	22	40817001	40817001	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	78	6	110	0	27	27	0	0	0
MEI1	150365	ucsc.edu	37	22	42177353	42177353	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	23	4	39	0	6	6	0	0	0
TCF20	6942	bcgsc.ca	37	22	42607615	42607615	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	121	8	111	0	15	15	0	0	0
PANX2	56666	ucsc.edu	37	22	50617376	50617376	+	Silent	SNP	C	C	A	rs149772397		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	31	4	42	0	1	1	0	0	0
BHLHE40	8553	ucsc.edu	37	3	5022084	5022084	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	50	5	52	0	15	15	0	0	0
CPNE9	151835	bcgsc.ca	37	3	9760188	9760188	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	97	7	132	0	0	0	0	0	0
EMC3	55831	bcgsc.ca	37	3	10018670	10018670	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	299	11	255	0	55	55	0	0	0
SLC6A1	6529	ucsc.edu	37	3	11067207	11067207	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	41	5	69	0	1	1	0	0	0
IQSEC1	9922	ucsc.edu	37	3	12977263	12977263	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	44	4	62	0	13	13	0	0	0
NR2C2	7182	bcgsc.ca	37	3	15064791	15064791	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	146	8	159	1	9	9	0	0	0
PDCD6IP	10015	bcgsc.ca	37	3	33868068	33868068	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	78	7	52	0	0	0	0	0	0
LRRFIP2	9209	bcgsc.ca	37	3	37107301	37107301	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	143	9	136	1	0	0	0	0	0
PLCD1	5333	ucsc.edu	37	3	38053048	38053048	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	40	4	67	0	0	0	0	0	0
SCN5A	6331	ucsc.edu	37	3	38622583	38622583	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	40	4	52	0	0	0	0	0	0
CCDC13	152206	hgsc.bcm.edu;bcgsc.ca	37	3	42777251	42777251	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	163	10	169	0	0	0	0	0	0
ZNF445	353274	ucsc.edu	37	3	44490226	44490226	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	31	4	36	0	0	0	0	0	0
ZNF197	10168	ucsc.edu	37	3	44683520	44683520	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	40	4	36	0	11	11	0	0	0
ZNF197	10168	ucsc.edu	37	3	44683629	44683629	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	44	5	47	0	13	13	0	0	0
FYCO1	79443	bcgsc.ca	37	3	46008688	46008688	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	203	12	214	0	13	13	0	0	0
FYCO1	79443	bcgsc.ca	37	3	46023122	46023122	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	117	9	72	0	10	10	0	0	0
FYCO1	79443	bcgsc.ca	37	3	46026360	46026360	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	156	8	129	0	0	0	0	0	0
CCRL2	9034	bcgsc.ca	37	3	46450534	46450534	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	212	11	224	1	1	1	0	0	0
NBEAL2	23218	ucsc.edu	37	3	47046580	47046580	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	41	4	42	0	0	0	0	0	0
NBEAL2	23218	ucsc.edu	37	3	47049874	47049874	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	33	4	36	0	23	23	0	0	0
PTPN23	25930	ucsc.edu	37	3	47451167	47451167	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	32	4	26	0	18	18	0	0	0
BSN	8927	bcgsc.ca	37	3	49662673	49662673	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	98	8	131	0	0	0	0	0	0
PARP3	10039	bcgsc.ca	37	3	51978533	51978533	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	204	11	230	0	35	35	0	0	0
TWF2	11344	ucsc.edu	37	3	52264013	52264013	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	28	4	44	0	128	128	0	0	0
STAB1	23166	ucsc.edu	37	3	52551393	52551393	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	72	7	89	0	14	14	0	0	0
PBRM1	55193	bcgsc.ca	37	3	52643972	52643972	+	Splice_Site	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	167	9	119	0	0	0	0	0	0
SFMBT1	51460	ucsc.edu	37	3	52977499	52977499	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	66	7	67	0	3	3	0	0	0
IL17RD	54756	ucsc.edu	37	3	57135325	57135325	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	43	4	38	0	3	3	0	0	0
PRICKLE2	166336	bcgsc.ca	37	3	64085134	64085134	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	94	8	116	1	9	9	0	0	0
ADAMTS9	56999	bcgsc.ca	37	3	64527079	64527079	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	195	11	179	0	0	0	0	0	0
ADAMTS9	56999	bcgsc.ca	37	3	64580058	64580058	+	Missense_Mutation	SNP	C	C	A	rs139134722	alternate_allele	TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	340	12	342	1	41	41	0	0	0
PPP4R2	151987	ucsc.edu	37	3	73113218	73113218	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	63	6	78	0	34	34	0	0	0
GBE1	2632	ucsc.edu	37	3	81720038	81720038	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	40	5	30	0	84	84	0	0	0
PROS1	5627	broad.mit.edu;ucsc.edu	37	3	93629510	93629510	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	59	6	59	0	29	25	4	0	0
CPOX	1371	bcgsc.ca	37	3	98300252	98300252	+	Silent	SNP	G	G	T	rs202148820	alternate_allele	TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	99	7	88	0	0	0	0	0	0
TBC1D23	55773	bcgsc.ca	37	3	100042452	100042452	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	28	6	17	0	41	41	0	0	0
ZPLD1	131368	bcgsc.ca	37	3	102175067	102175067	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	131	9	120	0	12	12	0	0	0
CASR	846	bcgsc.ca	37	3	121994773	121994773	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	177	10	175	0	0	0	0	0	0
ASTE1	28990	bcgsc.ca	37	3	130737435	130737435	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	168	8	155	0	6	6	0	0	0
RAB6B	51560	bcgsc.ca	37	3	133560167	133560167	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	62	6	101	0	20	20	0	0	0
EPHB1	2047	ucsc.edu	37	3	134644712	134644712	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	20	4	19	0	0	0	0	0	0
ARMC8	25852	broad.mit.edu;ucsc.edu	37	3	137964017	137964017	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	90	6	81	0	13	8	5	0	0
PRR23B	389151	ucsc.edu	37	3	138739253	138739253	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	42	4	47	0	0	0	0	0	0
SLC9A9	285195	ucsc.edu	37	3	143371163	143371163	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	40	4	42	0	5	5	0	0	0
KCNAB1	7881	ucsc.edu	37	3	156241614	156241614	+	Splice_Site	SNP	A	A	G	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	254	1	188	0	2	2	0	0	0
MFSD1	64747	ucsc.edu	37	3	158520044	158520044	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	36	4	46	0	33	33	0	0	0
PRKCI	5584	ucsc.edu;bcgsc.ca	37	3	169981194	169981194	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	88	9	67	0	23	23	0	0	0
NCEH1	57552	ucsc.edu	37	3	172351560	172351560	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	60	7	76	0	47	47	0	0	0
ABCC5	10057	hgsc.bcm.edu	37	3	183681371	183681371	+	Silent	SNP	T	T	C	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	53	3	83	0	0	0	0	0	0
DGKG	1608	ucsc.edu	37	3	185983090	185983090	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	42	5	47	0	0	0	0	0	0
MUC4	4585	ucsc.edu	37	3	195515735	195515735	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	49	6	60	0	0	0	0	0	0
PCYT1A	5130	ucsc.edu	37	3	195965674	195965674	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	44	5	55	0	19	19	0	0	0
PIGX	54965	ucsc.edu	37	3	196457884	196457884	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	43	4	32	0	28	28	0	0	0
LOC220729	0	broad.mit.edu	37	3	197348646	197348646	+	RNA	SNP	T	T	C	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	99	4	88	1	186	74	112	0	0
DGKQ	1609	bcgsc.ca	37	4	955800	955800	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	175	11	223	2	15	15	0	0	0
GRK4	2868	bcgsc.ca	37	4	3031085	3031085	+	Silent	SNP	C	C	A	rs144354307	byfrequency;alternate_allele	TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	83	7	50	0	1	1	0	0	0
HGFAC	3083	ucsc.edu	37	4	3444583	3444583	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	60	7	103	0	0	0	0	0	0
HGFAC	3083	ucsc.edu	37	4	3444808	3444808	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	30	4	52	0	0	0	0	0	0
AFAP1	60312	hgsc.bcm.edu;bcgsc.ca	37	4	7840357	7840357	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	174	9	166	0	6	6	0	0	0
CC2D2A	57545	ucsc.edu	37	4	15529235	15529235	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	41	4	25	0	7	7	0	0	0
RPL9	6133	ucsc.edu	37	4	39458117	39458117	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	64	6	40	0	2883	2882	0	1	0
GRXCR1	389207	bcgsc.ca	37	4	42895655	42895655	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	110	8	106	0	0	0	0	0	0
CORIN	10699	bcgsc.ca	37	4	47676433	47676433	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	190	9	170	1	0	0	0	0	0
CEP135	9662	bcgsc.ca	37	4	56819396	56819396	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	221	11	111	0	2	2	0	0	0
SRP72	6731	ucsc.edu	37	4	57367856	57367856	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	28	5	34	0	0	0	0	0	0
POLR2B	5431	bcgsc.ca	37	4	57896390	57896390	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	124	9	69	0	66	66	0	0	0
CENPC1	1060	ucsc.edu	37	4	68359614	68359614	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	38	4	32	0	0	0	0	0	0
SCARB2	950	bcgsc.ca	37	4	77095410	77095410	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	161	8	166	0	131	131	0	0	0
PRDM8	56978	ucsc.edu;bcgsc.ca	37	4	81122482	81122482	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	70	7	48	0	1	1	0	0	0
PRKG2	5593	bcgsc.ca	37	4	82058574	82058574	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	243	13	201	0	0	0	0	0	0
COQ2	27235	ucsc.edu	37	4	84185378	84185378	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	40	4	24	0	11	11	0	0	0
HERC5	51191	ucsc.edu	37	4	89427002	89427002	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	28	5	26	0	14	14	0	0	0
FAM13A	10144	bcgsc.ca	37	4	89660228	89660228	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	146	8	155	1	6	6	0	0	0
PDHA2	5161	bcgsc.ca	37	4	96762282	96762282	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	77	7	74	0	0	0	0	0	0
LAMTOR3	8649	ucsc.edu	37	4	100808464	100808464	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	35	4	38	0	0	0	0	0	0
PPP3CA	5530	ucsc.edu	37	4	101953480	101953480	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	44	4	49	0	15	14	1	0	0
MANBA	4126	bcgsc.ca	37	4	103585890	103585890	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	110	9	101	0	10	10	0	0	0
PLA2G12A	81579	ucsc.edu	37	4	110639847	110639847	+	Missense_Mutation	SNP	C	C	A	rs78154817		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	40	4	29	0	0	0	0	0	0
FABP2	2169	ucsc.edu	37	4	120240798	120240798	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	42	4	22	0	0	0	0	0	0
SH3D19	152503	bcgsc.ca	37	4	152069125	152069125	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	103	7	89	0	27	27	0	0	0
RBM46	166863	ucsc.edu	37	4	155720632	155720632	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	41	4	20	0	0	0	0	0	0
TMEM192	201931	bcgsc.ca	37	4	166006752	166006752	+	Silent	SNP	C	C	A	rs181591398	alternate_allele	TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	117	8	91	0	1	1	0	0	0
DDX60L	91351	bcgsc.ca	37	4	169342917	169342917	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	262	11	268	2	0	0	0	0	0
TENM3	55714	ucsc.edu	37	4	183601489	183601489	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	40	4	37	0	0	0	0	0	0
WWC2	80014	ucsc.edu	37	4	184182259	184182259	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	43	5	54	0	15	15	0	0	0
SDHA	6389	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	224586	224586	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	165	27	215	0	47	22	25	0	0
AHRR	57491	ucsc.edu	37	5	427963	427963	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	52	5	60	0	0	0	0	0	0
AHRR	57491	ucsc.edu	37	5	434295	434295	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	39	5	54	0	0	0	0	0	0
AHRR	57491	ucsc.edu	37	5	434408	434408	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	34	4	50	0	1	1	0	0	0
NKD2	85409	ucsc.edu	37	5	1037980	1037980	+	Missense_Mutation	SNP	G	G	T	rs201232442	alternate_allele	TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	40	4	47	0	7	7	0	0	0
CDH18	1016	bcgsc.ca	37	5	19473753	19473753	+	Missense_Mutation	SNP	C	C	A	rs144313870	alternate_allele	TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	349	14	287	2	0	0	0	0	0
ADAMTS12	81792	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	33596055	33596055	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	168	30	181	0	0	0	0	0	0
C1QTNF3-AMACR	0	bcgsc.ca	37	5	34004668	34004668	+	RNA	SNP	T	T	C	rs201830086	alternate_allele	TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	238	35	238	0	1	0	1	0	0
MROH2B	133558	ucsc.edu	37	5	41038852	41038852	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	38	4	43	0	0	0	0	0	0
MROH2B	133558	broad.mit.edu	37	5	41048436	41048436	+	Silent	SNP	C	C	T	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	178	6	165	0	0	0	0	0	0
ITGA1	3672	ucsc.edu	37	5	52235437	52235437	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	51	5	41	0	19	19	0	0	0
SKIV2L2	23517	ucsc.edu	37	5	54640414	54640414	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	45	5	52	0	10	10	0	0	0
DDX4	54514	bcgsc.ca	37	5	55082490	55082490	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	189	11	138	0	0	0	0	0	0
MAP1B	4131	bcgsc.ca	37	5	71494371	71494371	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	251	10	263	1	4	4	0	0	0
PDE8B	8622	ucsc.edu;bcgsc.ca	37	5	76633140	76633140	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	41	6	26	0	0	0	0	0	0
EDIL3	10085	ucsc.edu	37	5	83476277	83476277	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	34	4	35	0	25	25	0	0	0
TTC37	9652	bcgsc.ca	37	5	94830459	94830459	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	222	10	178	1	40	40	0	0	0
SLC25A46	91137	ucsc.edu	37	5	110079488	110079488	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	41	4	52	0	0	0	0	0	0
LOX	4015	bcgsc.ca	37	5	121405748	121405748	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	136	8	123	0	0	0	0	0	0
RAD50	10111	ucsc.edu	37	5	131940534	131940534	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	36	4	29	0	22	22	0	0	0
CTNNA1	1495	ucsc.edu;bcgsc.ca	37	5	138269708	138269708	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	58	6	56	0	715	715	0	0	0
HBEGF	1839	bcgsc.ca	37	5	139715603	139715603	+	Silent	SNP	C	C	A	rs141251136	byfrequency;alternate_allele	TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	141	8	163	0	0	0	0	0	0
SH3TC2	79628	bcgsc.ca	37	5	148406972	148406972	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	78	7	87	0	0	0	0	0	0
PDGFRB	5159	ucsc.edu	37	5	149515317	149515317	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	28	4	52	0	20	20	0	0	0
SLC6A7	6534	bcgsc.ca	37	5	149574469	149574469	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	109	9	111	0	0	0	0	0	0
FAT2	2196	ucsc.edu	37	5	150932930	150932930	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	39	4	49	0	0	0	0	0	0
KIF4B	285643	bcgsc.ca	37	5	154394892	154394892	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	213	11	180	0	0	0	0	0	0
CDHR2	54825	bcgsc.ca	37	5	176016107	176016107	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	284	12	352	0	0	0	0	0	0
DBN1	1627	bcgsc.ca	37	5	176895199	176895199	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	208	11	287	0	61	61	0	0	0
LOC202181	0	ucsc.edu	37	5	177058420	177058420	+	RNA	SNP	G	G	T	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	35	4	30	0	1	1	0	0	0
HNRNPAB	3182	ucsc.edu	37	5	177637558	177637558	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	44	4	50	0	1	1	0	0	0
COL23A1	91522	ucsc.edu	37	5	177683356	177683356	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	43	5	51	0	0	0	0	0	0
MGAT1	4245	bcgsc.ca	37	5	180219404	180219404	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	81	7	122	0	63	62	1	0	0
TRIM41	90933	ucsc.edu	37	5	180651507	180651507	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	35	4	56	0	17	17	0	0	0
PIP5K1P1	206426	ucsc.edu	37	6	7988475	7988475	+	RNA	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	16	4	21	0	0	0	0	0	0
HIST1H2BC	8347	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	26123936	26123936	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	226	15	279	0	4	2	2	0	0
MOG	4340	bcgsc.ca	37	6	29633972	29633972	+	Silent	SNP	G	G	T	rs148630553	byfrequency;alternate_allele	TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	250	14	253	2	0	0	0	0	0
DHX16	8449	hgsc.bcm.edu;bcgsc.ca	37	6	30632597	30632597	+	Missense_Mutation	SNP	G	G	T	rs200865497	alternate_allele	TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	113	9	110	1	16	16	0	0	0
VARS2	57176	ucsc.edu	37	6	30888873	30888873	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	42	4	50	0	35	35	0	0	0
MICA	100507436	ucsc.edu	37	6	31379868	31379868	+	Missense_Mutation	SNP	G	G	T	rs72558175	alternate_allele	TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	27	4	35	0	24	24	0	0	0
CLIC1	1192	ucsc.edu	37	6	31702027	31702027	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	32	4	47	0	608	608	0	0	0
ITPR3	3710	ucsc.edu	37	6	33646559	33646559	+	Silent	SNP	C	C	A	rs145939493	byfrequency;alternate_allele	TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	41	4	32	0	91	91	0	0	0
RPS10-NUDT3	0	ucsc.edu	37	6	34256699	34256699	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	47	5	36	0	0	0	0	0	0
RPL10A	4736	ucsc.edu	37	6	35436772	35436772	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	38	4	43	0	1174	1173	0	1	0
CLPSL2	389383	ucsc.edu	37	6	35745356	35745356	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	30	4	39	0	0	0	0	0	0
FGD2	221472	ucsc.edu	37	6	36993627	36993627	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	50	5	80	0	4	4	0	0	0
DNAH8	1769	bcgsc.ca	37	6	38723802	38723802	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	124	9	92	0	0	0	0	0	0
TREM2	54209	ucsc.edu	37	6	41126794	41126794	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	36	4	39	0	1	1	0	0	0
PGC	5225	ucsc.edu;bcgsc.ca	37	6	41712225	41712225	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	82	8	112	0	0	0	0	0	0
PRPH2	5961	bcgsc.ca	37	6	42689558	42689558	+	Missense_Mutation	SNP	C	C	A	rs61755793	bycluster;alternate_allele	TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	214	11	191	1	0	0	0	0	0
GLTSCR1L	23506	bcgsc.ca	37	6	42824907	42824907	+	Silent	SNP	G	G	T	rs9471932	byfrequency;alternate_allele	TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	179	8	141	0	18	18	0	0	0
SRF	6722	ucsc.edu	37	6	43146908	43146908	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	59	6	89	0	36	36	0	0	0
ABCC10	89845	bcgsc.ca	37	6	43406417	43406417	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	118	10	101	0	16	16	0	0	0
CAPN11	11131	ucsc.edu	37	6	44137685	44137685	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	21	4	19	0	0	0	0	0	0
PKHD1	5314	bcgsc.ca	37	6	51944754	51944754	+	Missense_Mutation	SNP	C	C	A	rs149841071	byfrequency;alternate_allele	TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	207	10	260	1	10	10	0	0	0
FBXO9	26268	ucsc.edu	37	6	52938384	52938384	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	30	4	26	0	43	43	0	0	0
ZNF451	26036	ucsc.edu	37	6	57013200	57013200	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	33	4	25	0	17	17	0	0	0
COL19A1	1310	ucsc.edu	37	6	70854849	70854849	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	23	4	17	0	0	0	0	0	0
COL19A1	1310	bcgsc.ca	37	6	70916970	70916970	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	231	12	290	2	0	0	0	0	0
MTO1	25821	bcgsc.ca	37	6	74210320	74210320	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	130	8	111	1	18	18	0	0	0
UFL1	23376	ucsc.edu	37	6	96988520	96988520	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	35	5	29	0	4	4	0	0	0
PRDM13	59336	ucsc.edu;bcgsc.ca	37	6	100054966	100054966	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	66	7	81	0	0	0	0	0	0
PRDM1	639	bcgsc.ca	37	6	106553435	106553435	+	Missense_Mutation	SNP	C	C	A	rs77256382	alternate_allele	TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	132	8	176	0	7	7	0	0	0
AIM1	202	ucsc.edu	37	6	106960867	106960867	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	29	4	34	0	14	14	0	0	0
ROS1	6098	bcgsc.ca	37	6	117631391	117631391	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	216	11	183	0	0	0	0	0	0
DCBLD1	285761	bcgsc.ca	37	6	117861907	117861907	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	164	9	182	0	2	2	0	0	0
STL	0	ucsc.edu	37	6	125233676	125233676	+	RNA	SNP	G	G	T	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	32	4	22	0	0	0	0	0	0
SAMD3	154075	ucsc.edu	37	6	130466523	130466523	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	52	5	35	0	0	0	0	0	0
ARG1	383	ucsc.edu	37	6	131904923	131904923	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	61	6	52	0	0	0	0	0	0
AHI1	54806	ucsc.edu	37	6	135751082	135751082	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	36	4	27	0	7	7	0	0	0
TAB2	23118	bcgsc.ca	37	6	149730786	149730786	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	255	11	191	0	68	68	0	0	0
ULBP2	80328	broad.mit.edu	37	6	150263283	150263283	+	Silent	SNP	T	T	G	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	38	12	26	9	0	0	0	0	0
SYNJ2	8871	hgsc.bcm.edu;bcgsc.ca	37	6	158516906	158516906	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	74	7	102	0	16	16	0	0	0
DLL1	28514	ucsc.edu	37	6	170593100	170593100	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	14	4	16	0	1	1	0	0	0
INTS1	26173	ucsc.edu;bcgsc.ca	37	7	1523742	1523742	+	Missense_Mutation	SNP	G	G	T	rs200983063	alternate_allele	TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	61	6	103	0	39	39	0	0	0
FBXL18	80028	ucsc.edu	37	7	5541208	5541208	+	Missense_Mutation	SNP	C	C	A	rs182776266	by1000genomes;alternate_allele	TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	35	4	49	0	6	6	0	0	0
AIMP2	7965	ucsc.edu	37	7	6063149	6063149	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	53	6	64	0	49	49	0	0	0
EIF2AK1	27102	bcgsc.ca	37	7	6078214	6078214	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	172	10	181	0	104	104	0	0	0
HDAC9	9734	ucsc.edu	37	7	18669040	18669040	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	38	4	35	0	1	1	0	0	0
TWIST1	7291	ucsc.edu	37	7	19156538	19156538	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	52	5	59	0	1	1	0	0	0
ITGB8	3696	bcgsc.ca	37	7	20371503	20371503	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	107	7	102	0	55	55	0	0	0
NOD1	10392	bcgsc.ca	37	7	30491663	30491663	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	98	8	84	0	5	5	0	0	0
INMT-FAM188B	100526825	bcgsc.ca	37	7	30931521	30931521	+	RNA	SNP	G	G	T	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	215	11	198	1	0	0	0	0	0
NEUROD6	63974	bcgsc.ca	37	7	31378656	31378656	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	228	12	258	1	0	0	0	0	0
BBS9	27241	ucsc.edu	37	7	33573754	33573754	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	38	5	38	0	27	27	0	0	0
ANLN	54443	ucsc.edu;bcgsc.ca	37	7	36459789	36459789	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	67	7	62	0	0	0	0	0	0
GLI3	2737	bcgsc.ca	37	7	42012111	42012111	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	133	8	138	0	2	2	0	0	0
PKD1L1	168507	ucsc.edu	37	7	47842925	47842925	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	49	5	73	0	0	0	0	0	0
ABCA13	154664	ucsc.edu	37	7	48313032	48313032	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	43	4	49	0	2	2	0	0	0
ELN	2006	bcgsc.ca	37	7	73474352	73474352	+	Silent	SNP	C	C	A	rs141115671	alternate_allele	TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	167	8	210	0	25	25	0	0	0
CACNA2D1	781	bcgsc.ca	37	7	81600016	81600016	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	229	12	213	0	4	4	0	0	0
ADAM22	53616	bcgsc.ca	37	7	87808319	87808319	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	112	7	119	1	0	0	0	0	0
SLC25A13	10165	ucsc.edu	37	7	95750680	95750680	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	52	6	60	0	0	0	0	0	0
ZKSCAN1	7586	ucsc.edu	37	7	99621917	99621917	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	31	4	55	0	0	0	0	0	0
PLOD3	8985	ucsc.edu	37	7	100853926	100853926	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	52	5	93	1	57	57	0	0	0
RPL19P12	100129424	ucsc.edu	37	7	102782176	102782176	+	RNA	SNP	G	G	T	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	41	4	44	0	1	1	0	0	0
SRPK2	6733	bcgsc.ca	37	7	104773542	104773542	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	93	8	98	0	0	0	0	0	0
CDHR3	222256	ucsc.edu	37	7	105664947	105664947	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	50	5	65	0	0	0	0	0	0
SLC26A4	5172	bcgsc.ca	37	7	107335068	107335068	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	114	7	95	0	0	0	0	0	0
DLD	1738	ucsc.edu	37	7	107545483	107545483	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	30	5	28	0	32	32	0	0	0
DOCK4	9732	ucsc.edu	37	7	111462465	111462465	+	Silent	SNP	C	C	A	rs17158877	byfrequency;alternate_allele	TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	51	5	39	0	9	9	0	0	0
FLNC	2318	ucsc.edu	37	7	128486368	128486368	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	42	6	44	0	0	0	0	0	0
STRIP2	57464	bcgsc.ca	37	7	129122761	129122761	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	102	8	124	0	0	0	0	0	0
TMEM209	84928	bcgsc.ca	37	7	129813516	129813516	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	192	10	179	1	22	22	0	0	0
COPG2	26958	ucsc.edu	37	7	130148460	130148460	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	37	5	24	0	27	27	0	0	0
PODXL	5420	hgsc.bcm.edu	37	7	131241029	131241029	+	Silent	SNP	G	G	C	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	15	3	16	1	0	0	0	0	0
STRA8	346673	bcgsc.ca	37	7	134930077	134930077	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	109	8	91	1	9	9	0	0	0
SVOPL	136306	ucsc.edu	37	7	138312142	138312142	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	46	5	23	0	2	2	0	0	0
HIPK2	28996	bcgsc.ca	37	7	139416356	139416356	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	134	8	180	0	16	16	0	0	0
KEL	3792	bcgsc.ca	37	7	142658158	142658158	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	77	6	86	0	0	0	0	0	0
FAM131B	9715	ucsc.edu	37	7	143056060	143056060	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	52	5	43	0	0	0	0	0	0
SSPO	23145	ucsc.edu	37	7	149477563	149477563	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	42	6	58	0	0	0	0	0	0
NOS3	4846	ucsc.edu	37	7	150695741	150695741	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	39	4	33	0	0	0	0	0	0
CSMD1	64478	bcgsc.ca	37	8	2820777	2820777	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	179	12	196	0	0	0	0	0	0
FAM86B3P	286042	ucsc.edu	37	8	8095877	8095877	+	RNA	SNP	G	G	T	rs9721107	byfrequency;alternate_allele	TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	53	12	74	5	10	10	0	0	0
SGK223	0	ucsc.edu	37	8	8235155	8235155	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	41	6	56	0	5	5	0	0	0
MFHAS1	9258	ucsc.edu	37	8	8749038	8749038	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	40	4	68	0	36	36	0	0	0
TNKS	8658	bcgsc.ca	37	8	9590802	9590802	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	156	10	113	0	0	0	0	0	0
DLC1	10395	bcgsc.ca	37	8	12957326	12957326	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	123	10	126	0	15	15	0	0	0
PCM1	5108	ucsc.edu	37	8	17849058	17849058	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	25	4	14	0	0	0	0	0	0
DOK2	9046	bcgsc.ca	37	8	21771103	21771103	+	Missense_Mutation	SNP	C	C	A	rs149394218	byfrequency;alternate_allele	TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	114	7	162	0	1	1	0	0	0
SORBS3	10174	ucsc.edu	37	8	22428725	22428725	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	42	4	67	0	0	0	0	0	0
RHOBTB2	23221	ucsc.edu	37	8	22861942	22861942	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	56	6	67	0	0	0	0	0	0
TNFRSF10A	8797	ucsc.edu	37	8	23056801	23056801	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	63	6	90	0	22	22	0	0	0
LOXL2	4017	ucsc.edu	37	8	23167234	23167234	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	41	4	34	0	60	60	0	0	0
NKX3-1	4824	bcgsc.ca	37	8	23538947	23538947	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	276	12	288	0	9	9	0	0	0
ADRA1A	148	bcgsc.ca	37	8	26627680	26627680	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	287	12	300	1	0	0	0	0	0
PLAT	5327	broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	42037495	42037495	+	Silent	SNP	G	G	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	28	7	24	0	12	10	2	0	0
IKBKB	3551	ucsc.edu	37	8	42174417	42174417	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	33	5	38	0	0	0	0	0	0
ATP6V1H	51606	ucsc.edu	37	8	54730060	54730060	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	46	5	28	0	68	68	0	0	0
EYA1	2138	broad.mit.edu	37	8	72129012	72129012	+	Silent	SNP	C	C	G	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	118	4	118	0	0	0	0	0	0
ZFHX4	79776	ucsc.edu	37	8	77763589	77763589	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	36	4	53	0	0	0	0	0	0
ZNF704	619279	ucsc.edu	37	8	81553672	81553672	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	40	5	44	0	2	2	0	0	0
WWP1	11059	bcgsc.ca	37	8	87447901	87447901	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	171	9	112	0	40	40	0	0	0
CNGB3	54714	bcgsc.ca	37	8	87638274	87638274	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	93	7	65	0	0	0	0	0	0
MMP16	4325	ucsc.edu	37	8	89180116	89180116	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	64	7	50	0	0	0	0	0	0
RUNX1T1	862	bcgsc.ca	37	8	92988192	92988192	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	155	9	160	0	0	0	0	0	0
GRHL2	79977	bcgsc.ca	37	8	102570794	102570794	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	158	8	173	0	0	0	0	0	0
ATAD2	29028	bcgsc.ca	37	8	124369951	124369951	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	78	8	38	0	0	0	0	0	0
KCNQ3	3786	bcgsc.ca	37	8	133198359	133198359	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	99	8	72	0	1	1	0	0	0
EEF1D	1936	ucsc.edu	37	8	144668461	144668461	+	Splice_Site	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	18	4	17	0	0	0	0	0	0
CPSF1	29894	ucsc.edu	37	8	145622102	145622102	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	43	6	60	0	33	33	0	0	0
RECQL4	9401	ucsc.edu	37	8	145737312	145737312	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	29	4	50	0	9	9	0	0	0
ZNF7	7553	bcgsc.ca	37	8	146067311	146067311	+	Silent	SNP	G	G	T	rs142068099	alternate_allele	TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	142	8	117	0	12	12	0	0	0
ZNF250	58500	ucsc.edu	37	8	146107821	146107821	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	41	5	53	0	8	8	0	0	0
DOCK8	81704	bcgsc.ca	37	9	396901	396901	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	138	9	91	0	9	9	0	0	0
SLC1A1	6505	bcgsc.ca	37	9	4576650	4576650	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	200	12	237	1	56	56	0	0	0
ELAVL2	1993	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	23762205	23762205	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	433	83	388	0	2	0	2	0	0
SPINK4	27290	bcgsc.ca	37	9	33246653	33246653	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	128	9	106	0	0	0	0	0	0
CHMP5	51510	ucsc.edu	37	9	33266112	33266112	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	38	4	43	0	0	0	0	0	0
NFX1	4799	ucsc.edu	37	9	33364758	33364758	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	27	4	37	0	14	14	0	0	0
DCTN3	11258	ucsc.edu	37	9	34613787	34613787	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	30	4	55	0	116	116	0	0	0
C9orf131	138724	bcgsc.ca	37	9	35045210	35045210	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	438	19	515	2	0	0	0	0	0
RECK	8434	bcgsc.ca	37	9	36118828	36118828	+	Silent	SNP	G	G	T	rs147027096	byfrequency;alternate_allele	TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	90	7	87	1	1	1	0	0	0
PIP5K1B	8395	bcgsc.ca	37	9	71606113	71606113	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	83	7	88	0	5	5	0	0	0
TRPM3	80036	ucsc.edu	37	9	73426086	73426086	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	32	4	22	0	0	0	0	0	0
SPATA31D1	389763	ucsc.edu	37	9	84609397	84609397	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	27	4	26	0	0	0	0	0	0
CTSL1	1514	bcgsc.ca	37	9	90343207	90343207	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	97	7	89	0	260	259	0	0	1
NOL8	55035	ucsc.edu	37	9	95060598	95060598	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	39	5	29	0	40	40	0	0	0
ECM2	1842	bcgsc.ca	37	9	95263247	95263247	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	112	8	93	0	9	9	0	0	0
FANCC	2176	ucsc.edu	37	9	97869474	97869474	+	Silent	SNP	C	C	A	rs79722116	byfrequency;alternate_allele	TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	51	5	57	0	22	22	0	0	0
COL15A1	1306	bcgsc.ca	37	9	101824329	101824329	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	255	14	203	0	52	52	0	0	0
MRPL50	54534	bcgsc.ca	37	9	104160816	104160816	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	205	11	201	0	21	21	0	0	0
EPB41L4B	54566	ucsc.edu	37	9	111947828	111947828	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	52	6	84	0	0	0	0	0	0
INIP	58493	bcgsc.ca	37	9	115451858	115451858	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	89	8	110	0	19	19	0	0	0
BSPRY	54836	hgsc.bcm.edu	37	9	116111948	116111948	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	6	4	5	0	0	0	0	0	0
ZNF618	114991	bcgsc.ca	37	9	116812343	116812343	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	171	8	146	0	10	10	0	0	0
TNC	3371	ucsc.edu	37	9	117853223	117853223	+	Silent	SNP	G	G	T	rs62638691	byfrequency;alternate_allele	TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	64	6	81	0	344	344	0	0	0
ASTN2	23245	bcgsc.ca	37	9	119488093	119488093	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	276	12	238	1	5	5	0	0	0
C5	727	bcgsc.ca	37	9	123725020	123725020	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	161	9	113	0	2	2	0	0	0
TTLL11	158135	bcgsc.ca	37	9	124751734	124751734	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	144	7	162	0	9	9	0	0	0
OR1L1	26737	bcgsc.ca	37	9	125424828	125424828	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	132	7	120	0	0	0	0	0	0
DENND1A	57706	bcgsc.ca	37	9	126429320	126429320	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	85	8	58	0	22	22	0	0	0
FAM129B	64855	ucsc.edu	37	9	130271374	130271374	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	37	4	50	0	540	540	0	0	0
PKN3	29941	bcgsc.ca	37	9	131482249	131482249	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	121	10	149	0	5	5	0	0	0
NUP188	23511	bcgsc.ca	37	9	131745645	131745645	+	Missense_Mutation	SNP	C	C	A	rs145874026	byfrequency;alternate_allele	TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	187	9	176	0	20	20	0	0	0
PRRC2B	84726	ucsc.edu	37	9	134334700	134334700	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	40	4	52	0	69	68	0	1	0
TTF1	7270	bcgsc.ca	37	9	135276979	135276979	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	154	10	145	0	10	10	0	0	0
C9orf96	169436	ucsc.edu	37	9	136262421	136262421	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	41	4	59	0	0	0	0	0	0
SLC2A6	11182	ucsc.edu	37	9	136340706	136340706	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	30	4	31	0	10	10	0	0	0
BRD3	8019	bcgsc.ca	37	9	136899943	136899943	+	Missense_Mutation	SNP	C	C	A	rs201974693	alternate_allele	TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	203	10	250	1	0	0	0	0	0
PMPCA	23203	ucsc.edu	37	9	139306505	139306505	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	42	5	50	0	30	30	0	0	0
INPP5E	56623	ucsc.edu	37	9	139325463	139325463	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	40	4	37	0	1	1	0	0	0
SEC16A	9919	ucsc.edu;bcgsc.ca	37	9	139369154	139369154	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	51	6	41	0	31	31	0	0	0
UAP1L1	91373	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	139972976	139972976	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	96	22	127	1	5	3	2	0	0
MAN1B1	11253	ucsc.edu	37	9	139990711	139990711	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	49	5	75	0	67	67	0	0	0
MAN1B1	11253	bcgsc.ca	37	9	140001761	140001761	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	82	7	122	0	71	71	0	0	0
ANAPC2	29882	ucsc.edu	37	9	140082408	140082408	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	48	5	63	1	32	32	0	0	0
PNPLA7	375775	ucsc.edu	37	9	140395252	140395252	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	38	4	48	0	3	3	0	0	0
PNPLA7	375775	bcgsc.ca	37	9	140441843	140441843	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	103	7	126	0	0	0	0	0	0
CACNA1B	774	bcgsc.ca	37	9	140968021	140968021	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	189	9	184	0	0	0	0	0	0
CACNA1B	774	ucsc.edu	37	9	140997212	140997212	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	38	4	54	0	0	0	0	0	0
PLCXD1	55344	bcgsc.ca	37	X	209733	209733	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	68	6	103	0	7	7	0	0	0
AKAP17A	8227	ucsc.edu	37	X	1720332	1720332	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	18	4	27	0	10	10	0	0	0
GYG2	8908	ucsc.edu	37	X	2777931	2777931	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	36	4	36	0	1	1	0	0	0
MXRA5	25878	bcgsc.ca	37	X	3240269	3240269	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	96	7	120	1	10	10	0	0	0
SYAP1	94056	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	16773188	16773188	+	Silent	SNP	T	T	C	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	87	37	97	1	41	6	35	0	0
MAGEB3	4114	ucsc.edu	37	X	30254372	30254372	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	33	4	15	0	0	0	0	0	0
FAM47A	158724	ucsc.edu	37	X	34149842	34149842	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	35	4	52	0	0	0	0	0	0
MID1IP1	58526	ucsc.edu	37	X	38664675	38664675	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	19	4	21	0	92	92	0	0	0
KDM6A	7403	ucsc.edu	37	X	44919371	44919371	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	35	4	36	0	12	12	0	0	0
CXorf36	79742	ucsc.edu	37	X	45011086	45011086	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	21	4	25	0	5	5	0	0	0
SLC9A7	84679	ucsc.edu	37	X	46502739	46502739	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	21	4	29	0	10	10	0	0	0
SLC38A5	92745	ucsc.edu	37	X	48318138	48318138	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	40	4	32	0	19	19	0	0	0
GATA1	2623	ucsc.edu	37	X	48649707	48649707	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	20	5	19	0	0	0	0	0	0
PIM2	11040	ucsc.edu	37	X	48771709	48771709	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	43	4	56	0	149	149	0	0	0
CCDC22	28952	ucsc.edu	37	X	49099645	49099645	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	32	4	31	0	0	0	0	0	0
MAGED1	9500	hgsc.bcm.edu	37	X	51638750	51638750	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	26	2	29	0	123	123	0	0	0
FAM120C	54954	ucsc.edu	37	X	54161445	54161445	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	20	4	21	0	3	3	0	0	0
FGD1	2245	ucsc.edu	37	X	54495292	54495292	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	34	4	20	0	13	13	0	0	0
ITIH6	347365	ucsc.edu	37	X	54823470	54823470	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	47	6	38	0	0	0	0	0	0
PDZD11	51248	ucsc.edu;bcgsc.ca	37	X	69508350	69508350	+	Missense_Mutation	SNP	G	G	T	rs200894457	alternate_allele	TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	31	5	32	0	63	63	0	0	0
KIF4A	24137	ucsc.edu	37	X	69510591	69510591	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	40	4	33	0	0	0	0	0	0
SLC7A3	84889	ucsc.edu	37	X	70145949	70145949	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	26	4	26	0	0	0	0	0	0
SNX12	29934	ucsc.edu	37	X	70281796	70281796	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	48	5	38	0	107	107	0	0	0
ZMYM3	9203	ucsc.edu	37	X	70464709	70464709	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	32	4	24	0	9	9	0	0	0
TAF1	6872	ucsc.edu	37	X	70601747	70601747	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	42	4	47	0	6	6	0	0	0
ABCB7	22	ucsc.edu	37	X	74334589	74334589	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	44	4	26	0	0	0	0	0	0
DACH2	117154	ucsc.edu	37	X	85403765	85403765	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	24	4	29	0	0	0	0	0	0
XRCC6P5	0	ucsc.edu	37	X	98974705	98974705	+	RNA	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	43	5	47	0	0	0	0	0	0
GLA	2717	ucsc.edu	37	X	100655746	100655746	+	Splice_Site	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	40	5	23	0	0	0	0	0	0
SLC25A53	401612	ucsc.edu	37	X	103349379	103349379	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	59	6	93	1	1	1	0	0	0
CXorf57	55086	bcgsc.ca	37	X	105879846	105879846	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	67	7	75	0	1	1	0	0	0
CXorf57	55086	bcgsc.ca	37	X	105882791	105882791	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	100	8	76	0	0	0	0	0	0
DOCK11	139818	ucsc.edu;bcgsc.ca	37	X	117796691	117796691	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	65	8	26	0	45	45	0	0	0
BCORL1	63035	bcgsc.ca	37	X	129149252	129149252	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	82	7	107	1	12	12	0	0	0
BCORL1	63035	ucsc.edu	37	X	129171341	129171341	+	Splice_Site	SNP	G	G	T	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	37	4	53	0	0	0	0	0	0
BCORL1	63035	ucsc.edu	37	X	129173257	129173257	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	41	4	49	0	0	0	0	0	0
ELF4	2000	ucsc.edu	37	X	129201074	129201074	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	46	6	89	0	16	16	0	0	0
DDX26B	203522	bcgsc.ca	37	X	134711181	134711181	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	127	11	118	0	6	6	0	0	0
GPR112	139378	bcgsc.ca	37	X	135487988	135487988	+	Missense_Mutation	SNP	G	G	T	rs199501897	alternate_allele	TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	97	7	99	0	0	0	0	0	0
SRPK3	26576	ucsc.edu	37	X	153048493	153048493	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	41	4	49	0	0	0	0	0	0
PDZD4	57595	ucsc.edu	37	X	153070222	153070222	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	45	6	73	0	3	3	0	0	0
FLNA	2316	ucsc.edu	37	X	153599290	153599290	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	31	4	21	0	325	325	0	0	0
DNASE1L1	1774	ucsc.edu	37	X	153631918	153631918	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	38	4	43	0	61	61	0	0	0
G6PD	2539	ucsc.edu	37	X	153762296	153762296	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	51	5	71	0	73	72	1	0	0
CTAG2	30848	ucsc.edu	37	X	153880442	153880442	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	50	4	65	0	0	0	0	0	0
RBMY1A3P	286557	broad.mit.edu	37	Y	9160442	9160442	+	RNA	SNP	A	A	C	novel		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	87	4	90	0	0	0	0	0	0
