Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	TTotCov	TVarCov	NTotCov	NVarCov	Trna_tot	Trna_ref	Trna_var	Trna_alt1	Trna_alt2
FAM41C	284593	bcgsc.ca	37	1	809621	809621	+	RNA	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	171	11	173	1	1	1	0	0	0
SAMD11	148398	ucsc.edu	37	1	874777	874777	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	42	4	59	0	0	0	0	0	0
KIAA1751	85452	bcgsc.ca	37	1	1887181	1887181	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	110	9	98	0	0	0	0	0	0
KIAA1751	85452	ucsc.edu	37	1	1897895	1897895	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	52	5	59	1	0	0	0	0	0
TMEM201	199953	ucsc.edu	37	1	9655947	9655947	+	Splice_Site	SNP	G	G	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	41	4	46	0	0	0	0	0	0
FBXO2	26232	bcgsc.ca	37	1	11708828	11708828	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	96	8	133	2	23	23	0	0	0
CROCC	9696	bcgsc.ca	37	1	17280747	17280747	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	153	11	146	0	3	3	0	0	0
PADI1	29943	ucsc.edu	37	1	17550188	17550188	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	51	5	46	0	0	0	0	0	0
ARHGEF10L	55160	ucsc.edu	37	1	18023366	18023366	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	38	4	67	0	36	36	0	0	0
ALDH4A1	8659	ucsc.edu	37	1	19212101	19212101	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	45	5	57	0	393	393	0	0	0
UBR4	23352	bcgsc.ca	37	1	19484382	19484382	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	161	9	156	1	25	25	0	0	0
PQLC2	54896	bcgsc.ca	37	1	19644196	19644196	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	157	11	180	3	31	31	0	0	0
MUL1	79594	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	20827614	20827614	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	142	45	145	0	0	0	0	0	0
EIF4G3	8672	bcgsc.ca	37	1	21220042	21220042	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	126	9	143	0	82	82	0	0	0
HSPG2	3339	ucsc.edu	37	1	22165900	22165900	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	48	6	56	1	12	12	0	0	0
EPHA8	2046	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	22903099	22903099	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	69	25	74	0	0	0	0	0	0
EPHA8	2046	bcgsc.ca	37	1	22923922	22923922	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	164	10	219	0	0	0	0	0	0
ZNF436	80818	bcgsc.ca	37	1	23689306	23689306	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	221	12	239	1	13	13	0	0	0
STPG1	90529	bcgsc.ca	37	1	24710446	24710446	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	206	9	202	2	11	11	0	0	0
WDTC1	23038	ucsc.edu	37	1	27614200	27614200	+	Silent	SNP	G	G	T	rs149594820	byfrequency;alternate_allele	TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	28	4	39	0	34	34	0	0	0
MAP3K6	9064	ucsc.edu	37	1	27683139	27683139	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	39	4	36	0	27	27	0	0	0
AHDC1	27245	ucsc.edu	37	1	27876385	27876385	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	40	5	60	1	20	20	0	0	0
RCC1	1104	broad.mit.edu	37	1	28862497	28862497	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	69	5	95	0	24	21	3	0	0
SRSF4	6429	ucsc.edu	37	1	29475735	29475735	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	44	4	48	0	0	0	0	0	0
LAPTM5	7805	ucsc.edu	37	1	31230524	31230524	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	57	6	78	0	55	55	0	0	0
PEF1	553115	bcgsc.ca	37	1	32100853	32100853	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	112	7	138	1	75	75	0	0	0
SPOCD1	90853	ucsc.edu	37	1	32265078	32265078	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	18	4	24	0	0	0	0	0	0
KPNA6	23633	ucsc.edu	37	1	32627552	32627552	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	38	4	34	0	0	0	0	0	0
YARS	8565	bcgsc.ca	37	1	33272092	33272092	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	258	12	235	2	0	0	0	0	0
DLGAP3	58512	ucsc.edu	37	1	35334682	35334682	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	26	4	23	0	0	0	0	0	0
RSPO1	284654	ucsc.edu	37	1	38079412	38079412	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	46	5	46	0	0	0	0	0	0
MACF1	23499	ucsc.edu	37	1	39782940	39782940	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	38	4	42	0	20	20	0	0	0
MACF1	23499	ucsc.edu	37	1	39898294	39898294	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	38	4	58	0	64	64	0	0	0
MACF1	23499	bcgsc.ca	37	1	39919465	39919465	+	Silent	SNP	C	C	A	rs183443732	alternate_allele	TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	268	13	321	4	138	137	0	1	0
MACF1	23499	bcgsc.ca	37	1	39919498	39919498	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	254	12	282	2	159	159	0	0	0
RLF	6018	bcgsc.ca	37	1	40703877	40703877	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	114	8	132	1	6	6	0	0	0
ZFP69	339559	ucsc.edu	37	1	40961631	40961631	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	62	6	68	0	6	6	0	0	0
CCDC24	149473	ucsc.edu	37	1	44458304	44458304	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	43	4	31	0	1	1	0	0	0
TMEM53	79639	ucsc.edu	37	1	45120677	45120677	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	32	4	50	0	44	44	0	0	0
PTCH2	8643	ucsc.edu	37	1	45292172	45292172	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	29	4	35	0	1	1	0	0	0
SPATA6	54558	ucsc.edu;bcgsc.ca	37	1	48869547	48869547	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	39	8	37	0	0	0	0	0	0
NRD1	4898	ucsc.edu	37	1	52276004	52276004	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	42	4	44	0	66	66	0	0	0
RAB3B	5865	bcgsc.ca	37	1	52398990	52398990	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	124	9	138	2	0	0	0	0	0
PARS2	25973	ucsc.edu	37	1	55224725	55224725	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	33	4	24	0	48	48	0	0	0
USP24	23358	ucsc.edu	37	1	55561009	55561009	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	39	4	38	0	14	14	0	0	0
CACHD1	57685	ucsc.edu	37	1	65113694	65113694	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	31	4	20	0	2	2	0	0	0
PDE4B	5142	bcgsc.ca	37	1	66723334	66723334	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	304	11	291	1	0	0	0	0	0
COL24A1	255631	ucsc.edu	37	1	86342825	86342825	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	35	5	38	0	0	0	0	0	0
VAV3	10451	broad.mit.edu	37	1	108507542	108507544	+	Splice_Site	DEL	GCC	GCC	-	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	GCC	GCC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	6	2	13	0	0	0	0	0	0
KCNA2	3737	bcgsc.ca	37	1	111147025	111147025	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	69	6	81	0	0	0	0	0	0
BCAS2	10286	bcgsc.ca	37	1	115123939	115123939	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	342	16	350	6	79	79	0	0	0
CD101	9398	bcgsc.ca	37	1	117552691	117552691	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	81	7	59	0	1	1	0	0	0
NOTCH2	4853	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	120458888	120458888	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	111	36	123	1	124	61	63	0	0
NBPF9	400818	broad.mit.edu	37	1	144823878	144823878	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	117	4	128	0	8	8	0	0	0
PIAS3	10401	bcgsc.ca	37	1	145581541	145581541	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	154	11	183	4	7	7	0	0	0
PDIA3P	171423	ucsc.edu	37	1	146651176	146651176	+	RNA	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	28	4	42	0	11	11	0	0	0
MTMR11	10903	bcgsc.ca	37	1	149902412	149902412	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	161	10	151	0	16	16	0	0	0
OTUD7B	56957	ucsc.edu	37	1	149916179	149916179	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	57	6	72	1	20	20	0	0	0
ECM1	1893	bcgsc.ca	37	1	150484859	150484859	+	Missense_Mutation	SNP	G	G	T	rs201366320	alternate_allele	TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	98	8	131	1	0	0	0	0	0
FAM63A	55793	bcgsc.ca	37	1	150971953	150971953	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	269	11	274	2	27	27	0	0	0
LCE2A	353139	bcgsc.ca	37	1	152671600	152671600	+	Missense_Mutation	SNP	C	C	A	rs201971844	alternate_allele	TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	96	7	126	0	0	0	0	0	0
PGLYRP3	114771	ucsc.edu	37	1	153271672	153271672	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	32	4	45	0	0	0	0	0	0
CHTOP	26097	bcgsc.ca	37	1	153609084	153609084	+	Missense_Mutation	SNP	C	C	A	rs140840793	alternate_allele	TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	77	7	67	0	86	86	0	0	0
CRTC2	200186	ucsc.edu	37	1	153926751	153926751	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	39	4	30	0	32	32	0	0	0
CREB3L4	148327	ucsc.edu	37	1	153946370	153946370	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	34	4	41	0	16	16	0	0	0
UBE2Q1	55585	bcgsc.ca	37	1	154528418	154528418	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	92	9	87	1	74	74	0	0	0
PBXIP1	57326	ucsc.edu	37	1	154923708	154923708	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	41	4	60	0	0	0	0	0	0
SHC1	6464	bcgsc.ca	37	1	154940251	154940251	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	79	8	100	1	70	70	0	0	0
EFNA4	1945	ucsc.edu	37	1	155039290	155039290	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	32	4	49	0	21	21	0	0	0
FDPS	2224	ucsc.edu	37	1	155282155	155282155	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	33	4	41	0	168	168	0	0	0
RXFP4	339403	ucsc.edu	37	1	155911941	155911941	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	63	6	70	1	0	0	0	0	0
UBQLN4	56893	ucsc.edu	37	1	156020948	156020948	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	33	5	29	0	36	36	0	0	0
PEAR1	375033	bcgsc.ca	37	1	156882320	156882320	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	93	9	84	0	0	0	0	0	0
FCRL5	83416	bcgsc.ca	37	1	157514168	157514168	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	195	12	243	2	0	0	0	0	0
KIRREL	55243	ucsc.edu	37	1	158063507	158063507	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	40	5	36	0	21	21	0	0	0
SPTA1	6708	bcgsc.ca	37	1	158597435	158597435	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	122	10	122	1	0	0	0	0	0
SPTA1	6708	bcgsc.ca	37	1	158622423	158622423	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	116	8	99	0	0	0	0	0	0
ATP1A2	477	bcgsc.ca	37	1	160099057	160099057	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	217	11	245	2	0	0	0	0	0
ATP1A2	477	bcgsc.ca	37	1	160100007	160100007	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	125	10	131	0	0	0	0	0	0
SLAMF1	6504	bcgsc.ca	37	1	160589577	160589577	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	159	9	197	0	0	0	0	0	0
CD48	962	ucsc.edu	37	1	160654913	160654913	+	Missense_Mutation	SNP	G	G	T	rs7556485	bycluster;byfrequency;alternate_allele	TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	38	4	42	0	21	21	0	0	0
USF1	7391	bcgsc.ca	37	1	161011553	161011553	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	90	8	101	1	38	38	0	0	0
MAEL	84944	ucsc.edu;bcgsc.ca	37	1	166991043	166991043	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	104	10	138	1	0	0	0	0	0
TNN	63923	ucsc.edu	37	1	175049359	175049359	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	45	6	53	0	0	0	0	0	0
KIAA1614	57710	bcgsc.ca	37	1	180885893	180885893	+	Silent	SNP	C	C	A	rs12082445	alternate_allele	TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	176	11	193	3	5	5	0	0	0
LAMC1	3915	bcgsc.ca	37	1	183093812	183093812	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	126	9	116	1	124	124	0	0	0
PRG4	10216	ucsc.edu	37	1	186278261	186278261	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	63	6	68	0	0	0	0	0	0
MIR548F1	100302192	bcgsc.ca	37	1	186332465	186332465	+	RNA	SNP	G	G	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	72	8	77	0	0	0	0	0	0
PKP1	5317	ucsc.edu	37	1	201287823	201287823	+	Missense_Mutation	SNP	C	C	A	rs200975137	alternate_allele	TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	46	5	38	0	0	0	0	0	0
ATP2B4	493	bcgsc.ca	37	1	203681167	203681167	+	Missense_Mutation	SNP	G	G	T	rs201454023	alternate_allele	TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	114	8	114	0	14	14	0	0	0
NUAK2	81788	ucsc.edu	37	1	205273024	205273024	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	37	4	50	0	8	8	0	0	0
CR2	1380	bcgsc.ca	37	1	207639947	207639947	+	Silent	SNP	C	C	A	rs139230710	byfrequency;alternate_allele	TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	203	9	239	1	0	0	0	0	0
RRP15	51018	ucsc.edu	37	1	218480915	218480915	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	31	4	45	0	17	17	0	0	0
EPRS	2058	bcgsc.ca	37	1	220162102	220162102	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	146	10	166	2	46	46	0	0	0
WDR26	80232	ucsc.edu	37	1	224619227	224619227	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	47	5	58	1	19	19	0	0	0
OBSCN	84033	ucsc.edu	37	1	228559723	228559723	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	41	4	41	0	1	1	0	0	0
HEATR1	55127	ucsc.edu	37	1	236734692	236734692	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	38	4	60	1	4	4	0	0	0
CNST	163882	bcgsc.ca	37	1	246810884	246810884	+	Missense_Mutation	SNP	C	C	A	rs139917858	alternate_allele	TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	187	10	234	2	11	11	0	0	0
AHCTF1	25909	ucsc.edu	37	1	247039339	247039339	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	47	5	51	1	0	0	0	0	0
ZNF692	55657	ucsc.edu	37	1	249150110	249150110	+	Missense_Mutation	SNP	G	G	T	rs145545056	byfrequency;alternate_allele	TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	40	5	68	0	14	14	0	0	0
ITIH5	80760	ucsc.edu;bcgsc.ca	37	10	7679296	7679296	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	65	8	108	0	0	0	0	0	0
ZNF438	220929	bcgsc.ca	37	10	31134017	31134017	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	254	10	238	2	8	8	0	0	0
EPC1	80314	ucsc.edu	37	10	32561018	32561018	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	56	7	61	1	20	20	0	0	0
BMS1	9790	ucsc.edu	37	10	43326355	43326355	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	35	4	37	0	24	24	0	0	0
RASGEF1A	221002	ucsc.edu	37	10	43697256	43697256	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	33	4	48	0	0	0	0	0	0
JMJD1C	221037	bcgsc.ca	37	10	64968225	64968225	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	233	11	235	5	15	15	0	0	0
HKDC1	80201	ucsc.edu	37	10	70987115	70987115	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	42	4	60	0	0	0	0	0	0
SEC24C	9632	ucsc.edu	37	10	75526264	75526264	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	52	6	65	0	92	92	0	0	0
ZSWIM8	23053	ucsc.edu	37	10	75548451	75548451	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	61	6	70	0	23	23	0	0	0
LDB3	11155	bcgsc.ca	37	10	88476315	88476315	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	134	9	124	0	0	0	0	0	0
LDB3	11155	bcgsc.ca	37	10	88485940	88485940	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	116	8	100	1	0	0	0	0	0
PDE6C	5146	ucsc.edu	37	10	95418900	95418900	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	45	5	45	0	0	0	0	0	0
SORBS1	10580	ucsc.edu	37	10	97127433	97127433	+	Silent	SNP	C	C	A	rs202097631	alternate_allele	TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	43	5	44	0	4	4	0	0	0
ALDH18A1	5832	ucsc.edu;bcgsc.ca	37	10	97392770	97392770	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	81	9	100	0	39	39	0	0	0
BLNK	29760	ucsc.edu	37	10	97976474	97976474	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	50	5	54	0	8	8	0	0	0
TLL2	7093	bcgsc.ca	37	10	98165021	98165021	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	278	13	319	5	0	0	0	0	0
LOXL4	84171	ucsc.edu	37	10	100019178	100019178	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	40	4	68	0	0	0	0	0	0
SLC25A28	81894	ucsc.edu	37	10	101370911	101370911	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	60	6	81	0	29	29	0	0	0
ABCC2	1244	bcgsc.ca	37	10	101556985	101556985	+	Missense_Mutation	SNP	G	G	T	rs139964853	alternate_allele	TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	56	6	58	0	0	0	0	0	0
CHUK	1147	bcgsc.ca	37	10	101961882	101961882	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	137	9	117	1	37	37	0	0	0
PPRC1	23082	ucsc.edu	37	10	103906882	103906882	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	49	5	52	1	18	18	0	0	0
PDCD11	22984	bcgsc.ca	37	10	105166392	105166392	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	112	9	117	0	21	21	0	0	0
TDRD1	56165	bcgsc.ca	37	10	115963152	115963152	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	143	9	144	1	0	0	0	0	0
PDZD8	118987	bcgsc.ca	37	10	119049723	119049723	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	110	7	124	1	38	38	0	0	0
WDR11	55717	bcgsc.ca	37	10	122643355	122643355	+	Silent	SNP	C	C	A	rs146067486	byfrequency;alternate_allele	TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	87	8	102	1	29	29	0	0	0
WDR11	55717	ucsc.edu	37	10	122646341	122646341	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	48	6	69	1	0	0	0	0	0
TACC2	10579	ucsc.edu	37	10	123846914	123846914	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	53	5	54	0	26	26	0	0	0
TACC2	10579	bcgsc.ca	37	10	123988920	123988920	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	389	15	484	5	2	2	0	0	0
PTPRE	5791	bcgsc.ca	37	10	129864394	129864394	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	148	9	161	2	9	9	0	0	0
MGMT	4255	ucsc.edu	37	10	131565242	131565242	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	42	4	26	0	100	100	0	0	0
TSPAN32	10077	ucsc.edu	37	11	2339138	2339138	+	Missense_Mutation	SNP	G	G	T	rs199740795	alternate_allele	TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	35	4	61	0	1	1	0	0	0
OR51F1	256892	ucsc.edu;bcgsc.ca	37	11	4790880	4790880	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	51	6	39	0	0	0	0	0	0
DCHS1	8642	ucsc.edu	37	11	6649969	6649969	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	54	7	52	0	0	0	0	0	0
SYT9	143425	bcgsc.ca	37	11	7439309	7439309	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	121	8	134	2	0	0	0	0	0
SBF2	81846	ucsc.edu	37	11	10014060	10014060	+	Nonsense_Mutation	SNP	C	C	A	rs201970985	alternate_allele	TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	40	4	44	0	20	20	0	0	0
CTR9	9646	ucsc.edu	37	11	10800232	10800232	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	43	4	37	0	0	0	0	0	0
SOX6	55553	bcgsc.ca	37	11	16208432	16208432	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	258	12	291	5	8	8	0	0	0
IGSF22	283284	bcgsc.ca	37	11	18738393	18738393	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	277	12	304	4	0	0	0	0	0
GAS2	2620	ucsc.edu;bcgsc.ca	37	11	22770685	22770685	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	67	7	68	0	0	0	0	0	0
PAX6	5080	ucsc.edu	37	11	31824374	31824374	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	51	5	38	0	0	0	0	0	0
KIAA1549L	25758	ucsc.edu	37	11	33689523	33689523	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	39	4	67	1	0	0	0	0	0
FBXO3	26273	ucsc.edu	37	11	33777483	33777483	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	40	4	82	1	54	54	0	0	0
HNRNPKP3	399881	ucsc.edu	37	11	43284453	43284453	+	RNA	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	28	4	26	0	0	0	0	0	0
EXT2	2132	bcgsc.ca	37	11	44253941	44253941	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	95	9	79	1	82	82	0	0	0
KBTBD4	55709	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	47597183	47597183	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	176	44	182	0	0	0	0	0	0
OR4S2	219431	bcgsc.ca	37	11	55418988	55418988	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	198	11	235	2	0	0	0	0	0
TNKS1BP1	85456	broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	57085299	57085299	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	49	8	49	0	0	0	0	0	0
ZDHHC5	25921	ucsc.edu	37	11	57466455	57466455	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	47	5	56	0	134	134	0	0	0
MED19	219541	bcgsc.ca	37	11	57472194	57472194	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	142	9	130	0	0	0	0	0	0
DTX4	23220	bcgsc.ca	37	11	58959682	58959682	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	157	12	193	0	33	33	0	0	0
OR4D10	390197	bcgsc.ca	37	11	59245151	59245151	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	162	11	160	0	0	0	0	0	0
ZP1	22917	ucsc.edu	37	11	60636709	60636709	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	38	4	51	1	0	0	0	0	0
DAGLA	747	ucsc.edu	37	11	61503047	61503047	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	56	6	55	0	4	4	0	0	0
FLRT1	23769	ucsc.edu	37	11	63885449	63885449	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	39	4	43	0	1	1	0	0	0
ESRRA	2101	ucsc.edu	37	11	64074870	64074870	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	22	4	25	0	218	218	0	0	0
SLC22A12	116085	ucsc.edu	37	11	64361028	64361028	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	32	4	57	0	0	0	0	0	0
CDC42BPG	55561	ucsc.edu	37	11	64603243	64603243	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	27	4	41	0	0	0	0	0	0
CDC42BPG	55561	ucsc.edu	37	11	64609290	64609290	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	62	6	70	0	0	0	0	0	0
MALAT1	378938	ucsc.edu	37	11	65268364	65268364	+	RNA	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	43	5	67	0	148	148	0	0	0
LTBP3	4054	ucsc.edu	37	11	65321842	65321842	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	34	4	22	0	0	0	0	0	0
AP5B1	91056	ucsc.edu	37	11	65546254	65546254	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	29	4	20	0	17	17	0	0	0
BANF1	8815	ucsc.edu	37	11	65770732	65770732	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	46	5	54	0	184	184	0	0	0
CCDC87	55231	bcgsc.ca	37	11	66358971	66358971	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	132	9	150	1	3	3	0	0	0
C11orf80	79703	ucsc.edu	37	11	66563765	66563765	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	37	4	30	0	24	24	0	0	0
CLCF1	23529	ucsc.edu	37	11	67132739	67132739	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	70	7	69	0	27	27	0	0	0
CORO1B	57175	ucsc.edu	37	11	67206390	67206390	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	36	4	49	0	221	221	0	0	0
ANO1	55107	ucsc.edu	37	11	69933954	69933954	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	34	4	30	0	0	0	0	0	0
RNF121	55298	bcgsc.ca	37	11	71701757	71701757	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	297	15	334	2	0	0	0	0	0
NUMA1	4926	ucsc.edu	37	11	71717298	71717298	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	42	4	43	0	1	1	0	0	0
XRRA1	143570	ucsc.edu	37	11	74554931	74554931	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	30	4	27	0	8	8	0	0	0
OR2AT4	341152	ucsc.edu	37	11	74800043	74800043	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	51	5	64	0	0	0	0	0	0
C11orf30	56946	bcgsc.ca	37	11	76171053	76171053	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	216	11	201	1	5	5	0	0	0
PRSS23	11098	bcgsc.ca	37	11	86519773	86519773	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	237	13	240	0	32	32	0	0	0
FUT4	2526	ucsc.edu	37	11	94278514	94278514	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	40	4	29	0	17	17	0	0	0
AMOTL1	154810	ucsc.edu	37	11	94592857	94592857	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	20	4	20	0	29	29	0	0	0
DYNC2H1	79659	ucsc.edu	37	11	103339408	103339408	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	52	6	66	1	14	14	0	0	0
ANKK1	255239	ucsc.edu;bcgsc.ca	37	11	113270776	113270776	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	64	6	41	0	0	0	0	0	0
ZW10	9183	ucsc.edu	37	11	113614714	113614714	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	45	5	56	0	22	22	0	0	0
SIK3	23387	ucsc.edu;bcgsc.ca	37	11	116728956	116728956	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	55	6	56	0	26	26	0	0	0
RNF214	257160	ucsc.edu	37	11	117152041	117152041	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	36	4	58	1	0	0	0	0	0
BACE1	23621	bcgsc.ca	37	11	117163813	117163813	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	283	11	328	4	38	38	0	0	0
DSCAML1	57453	ucsc.edu	37	11	117395656	117395656	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	37	5	35	0	3	3	0	0	0
DDX6	1656	ucsc.edu	37	11	118650396	118650396	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	25	4	37	0	65	65	0	0	0
BCL9L	283149	ucsc.edu	37	11	118769396	118769396	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	38	4	38	0	20	20	0	0	0
NLRX1	79671	ucsc.edu	37	11	119053904	119053904	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	43	5	61	0	54	54	0	0	0
CBL	867	bcgsc.ca	37	11	119144723	119144723	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	95	7	118	1	1	1	0	0	0
OR6M1	390261	ucsc.edu	37	11	123676742	123676742	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	37	4	36	0	0	0	0	0	0
PATE2	399967	ucsc.edu	37	11	125647290	125647290	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	69	7	60	0	0	0	0	0	0
APLP2	334	ucsc.edu	37	11	130011927	130011927	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	38	4	41	0	1296	1296	0	0	0
IGSF9B	22997	bcgsc.ca	37	11	133790075	133790075	+	Missense_Mutation	SNP	C	C	A	rs199538394	alternate_allele	TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	97	8	85	0	0	0	0	0	0
FBXL14	144699	ucsc.edu	37	12	1675976	1675976	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	73	7	73	0	0	0	0	0	0
ADIPOR2	79602	bcgsc.ca	37	12	1863531	1863531	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	127	8	121	1	16	16	0	0	0
NTF3	4908	ucsc.edu	37	12	5604093	5604093	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	58	6	40	0	0	0	0	0	0
VWF	7450	ucsc.edu	37	12	6174374	6174374	+	Missense_Mutation	SNP	C	C	A	rs201306785	alternate_allele	TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	35	4	36	0	8	8	0	0	0
LAG3	3902	ucsc.edu	37	12	6886620	6886620	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	39	4	70	0	4	4	0	0	0
DUSP16	80824	bcgsc.ca	37	12	12629994	12629994	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	139	8	162	2	27	27	0	0	0
PTPRO	5800	ucsc.edu	37	12	15734707	15734707	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	58	6	57	0	7	7	0	0	0
AEBP2	121536	ucsc.edu	37	12	19615462	19615462	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	30	4	27	0	16	16	0	0	0
RASSF8	11228	ucsc.edu	37	12	26220645	26220645	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	62	7	78	0	0	0	0	0	0
DENND5B	160518	ucsc.edu	37	12	31632578	31632578	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	12	4	17	0	7	7	0	0	0
ADAMTS20	80070	ucsc.edu	37	12	43793011	43793011	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	19	4	23	0	0	0	0	0	0
HDAC7	51564	ucsc.edu	37	12	48192412	48192412	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	40	4	28	0	18	18	0	0	0
COL2A1	1280	ucsc.edu	37	12	48377886	48377886	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	40	4	40	0	0	0	0	0	0
SLC11A2	4891	ucsc.edu	37	12	51398585	51398585	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	32	4	42	0	33	33	0	0	0
KRT82	3888	bcgsc.ca	37	12	52799730	52799730	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	174	11	182	0	0	0	0	0	0
ATF7	11016	ucsc.edu	37	12	53937163	53937163	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	31	4	19	0	31	31	0	0	0
GPR84	53831	bcgsc.ca	37	12	54756590	54756590	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	178	11	209	2	2	2	0	0	0
DGKA	1606	ucsc.edu;bcgsc.ca	37	12	56346170	56346170	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	84	8	111	0	11	11	0	0	0
SMARCC2	6601	bcgsc.ca	37	12	56572289	56572289	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	107	8	127	1	67	67	0	0	0
BAZ2A	11176	ucsc.edu	37	12	57004254	57004254	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	42	4	37	0	20	20	0	0	0
GPR182	11318	ucsc.edu	37	12	57389547	57389547	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	41	4	64	1	0	0	0	0	0
STAT6	6778	ucsc.edu	37	12	57500336	57500336	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	72	7	76	1	102	102	0	0	0
STAT6	6778	ucsc.edu	37	12	57501527	57501527	+	Splice_Site	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	44	4	63	2	0	0	0	0	0
LRP1	4035	ucsc.edu	37	12	57600440	57600440	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	58	6	86	0	133	133	0	0	0
SHMT2	6472	ucsc.edu;bcgsc.ca	37	12	57627365	57627365	+	Missense_Mutation	SNP	G	G	T	rs201473547	alternate_allele	TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	57	6	73	0	194	194	0	0	0
DCTN2	10540	ucsc.edu	37	12	57929554	57929554	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	33	4	36	0	190	190	0	0	0
B4GALNT1	2583	ucsc.edu	37	12	58021606	58021606	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	24	4	22	0	0	0	0	0	0
METTL1	4234	ucsc.edu	37	12	58163187	58163187	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	45	6	63	0	0	0	0	0	0
METTL21B	25895	ucsc.edu	37	12	58168512	58168512	+	Silent	SNP	C	C	A	rs149061035	alternate_allele	TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	25	4	18	0	0	0	0	0	0
AVIL	10677	ucsc.edu	37	12	58196046	58196046	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	40	4	51	0	1	1	0	0	0
LGR5	8549	ucsc.edu	37	12	71965293	71965293	+	Splice_Site	SNP	G	G	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	52	5	69	0	0	0	0	0	0
NAV3	89795	bcgsc.ca	37	12	78513453	78513453	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	76	7	91	1	0	0	0	0	0
STAB2	55576	bcgsc.ca	37	12	104081963	104081963	+	Silent	SNP	C	C	A	rs147383981	byfrequency;alternate_allele	TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	165	9	151	2	0	0	0	0	0
APPL2	55198	bcgsc.ca	37	12	105582079	105582079	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	105	8	101	1	56	56	0	0	0
ACACB	32	bcgsc.ca	37	12	109684182	109684182	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	87	7	96	1	10	10	0	0	0
GCN1L1	10985	bcgsc.ca	37	12	120592783	120592783	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	87	8	102	0	0	0	0	0	0
P2RX7	5027	bcgsc.ca	37	12	121593947	121593947	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	111	7	128	1	0	0	0	0	0
P2RX7	5027	bcgsc.ca	37	12	121598738	121598738	+	Silent	SNP	C	C	A	rs200430009	alternate_allele	TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	299	12	342	0	6	6	0	0	0
KNTC1	9735	ucsc.edu	37	12	123019253	123019253	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	40	4	29	0	3	3	0	0	0
HIP1R	9026	ucsc.edu	37	12	123339831	123339831	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	41	4	42	0	33	33	0	0	0
TNFRSF19	55504	ucsc.edu	37	13	24242173	24242173	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	27	4	32	0	13	13	0	0	0
PARP4	143	ucsc.edu	37	13	25016013	25016013	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	70	7	80	0	169	169	0	0	0
FRY	10129	ucsc.edu;bcgsc.ca	37	13	32823675	32823675	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	49	6	73	0	0	0	0	0	0
NAA16	79612	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	41905433	41905433	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	148	47	187	0	10	6	4	0	0
VWA8	23078	bcgsc.ca	37	13	42277540	42277540	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	68	7	93	0	0	0	0	0	0
FNDC3A	22862	ucsc.edu	37	13	49781375	49781375	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	40	4	54	0	76	76	0	0	0
SETDB2	83852	ucsc.edu	37	13	50038156	50038156	+	Splice_Site	SNP	G	G	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	29	4	32	0	0	0	0	0	0
DHRS12	79758	ucsc.edu	37	13	52345533	52345533	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	42	4	31	0	2	2	0	0	0
RNF113B	140432	bcgsc.ca	37	13	98828600	98828600	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	163	12	165	2	0	0	0	0	0
STK24	8428	ucsc.edu	37	13	99118675	99118675	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	70	7	102	0	228	228	0	0	0
MIR623	693208	bcgsc.ca	37	13	100008450	100008450	+	RNA	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	536	17	574	4	0	0	0	0	0
ARGLU1	55082	hgsc.bcm.edu;bcgsc.ca	37	13	107211878	107211878	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	208	12	197	2	52	52	0	0	0
ATP11A	23250	bcgsc.ca	37	13	113478731	113478731	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	86	6	130	0	0	0	0	0	0
MCF2L	23263	ucsc.edu	37	13	113733007	113733007	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	38	4	22	0	9	9	0	0	0
TEP1	7011	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	20841196	20841196	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	103	41	115	0	8	4	4	0	0
OSGEP	55644	bcgsc.ca	37	14	20922834	20922834	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	55	6	64	0	19	19	0	0	0
MYH7	4625	ucsc.edu	37	14	23899873	23899873	+	Splice_Site	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	37	5	60	0	0	0	0	0	0
PCK2	5106	ucsc.edu	37	14	24567800	24567800	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	53	5	56	0	134	134	0	0	0
IPO4	79711	ucsc.edu	37	14	24653212	24653212	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	30	4	36	0	0	0	0	0	0
HEATR5A	25938	bcgsc.ca	37	14	31774324	31774324	+	Nonsense_Mutation	SNP	C	C	A	rs61754158	byfrequency;alternate_allele	TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	112	8	99	0	20	20	0	0	0
RALGAPA1	253959	ucsc.edu	37	14	36211636	36211636	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	49	5	41	0	5	5	0	0	0
SEC23A	10484	bcgsc.ca	37	14	39555062	39555062	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	251	12	234	2	42	42	0	0	0
L2HGDH	79944	ucsc.edu	37	14	50745238	50745238	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	29	4	13	0	0	0	0	0	0
TXNDC16	57544	ucsc.edu	37	14	52906021	52906021	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	49	5	62	1	5	5	0	0	0
TMEM260	0	bcgsc.ca	37	14	57092170	57092170	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	113	7	135	2	13	13	0	0	0
C14orf37	145407	ucsc.edu	37	14	58478859	58478859	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	22	4	32	0	0	0	0	0	0
C14orf39	317761	ucsc.edu	37	14	60938168	60938168	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	24	4	30	0	0	0	0	0	0
MTHFD1	4522	bcgsc.ca	37	14	64882195	64882195	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	291	12	272	3	120	120	0	0	0
PLEKHH1	57475	bcgsc.ca	37	14	68047705	68047705	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	86	8	126	1	8	8	0	0	0
MAP3K9	4293	ucsc.edu	37	14	71206849	71206849	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	37	5	57	0	12	12	0	0	0
ELMSAN1	91748	ucsc.edu	37	14	74205655	74205655	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	41	4	44	0	11	11	0	0	0
ABCD4	5826	bcgsc.ca	37	14	74766251	74766251	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	120	8	113	0	0	0	0	0	0
LTBP2	4053	ucsc.edu	37	14	74974697	74974697	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	31	4	48	0	12	12	0	0	0
C14orf166B	145497	ucsc.edu	37	14	77311221	77311221	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	42	5	45	0	0	0	0	0	0
DDX24	57062	bcgsc.ca	37	14	94517650	94517650	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	109	8	107	0	79	79	0	0	0
DYNC1H1	1778	ucsc.edu	37	14	102504828	102504828	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	32	4	47	1	210	210	0	0	0
AMN	81693	ucsc.edu	37	14	103395249	103395249	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	42	4	55	1	115	114	0	0	1
INF2	64423	ucsc.edu	37	14	105178789	105178789	+	Missense_Mutation	SNP	C	C	A	rs201534539	alternate_allele	TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	31	4	40	0	64	64	0	0	0
INF2	64423	ucsc.edu	37	14	105185142	105185142	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	38	4	44	0	0	0	0	0	0
AHNAK2	113146	ucsc.edu	37	14	105415291	105415291	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	485	2	539	0	96	96	0	0	0
NDNL2	56160	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	29561225	29561225	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	134	50	149	0	34	17	17	0	0
LOC100288637	0	broad.mit.edu	37	15	30938316	30938316	+	Splice_Site	SNP	G	G	A	rs112615235		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	37	4	40	1	0	0	0	0	0
ARHGAP11A	9824	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	32928906	32928906	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	46	25	59	0	0	0	0	0	0
PLCB2	5330	ucsc.edu	37	15	40581108	40581108	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	47	5	59	0	0	0	0	0	0
RTF1	23168	bcgsc.ca	37	15	41770784	41770784	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	354	17	308	2	65	65	0	0	0
SPTBN5	51332	ucsc.edu	37	15	42172452	42172452	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	20	4	17	0	2	2	0	0	0
TMEM87A	25963	ucsc.edu;bcgsc.ca	37	15	42553407	42553407	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	51	7	58	0	0	0	0	0	0
TP53BP1	7158	ucsc.edu	37	15	43701895	43701895	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	42	4	50	0	24	24	0	0	0
DUOX2	50506	ucsc.edu	37	15	45396441	45396441	+	Silent	SNP	G	G	T	rs151013553	alternate_allele	TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	54	4	45	0	11	11	0	0	0
ATP8B4	79895	ucsc.edu	37	15	50264984	50264984	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	36	4	50	0	0	0	0	0	0
UNC13C	440279	bcgsc.ca	37	15	54542518	54542518	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	88	9	95	1	0	0	0	0	0
RAB27A	5873	bcgsc.ca	37	15	55497728	55497728	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	214	11	200	1	12	12	0	0	0
CGNL1	84952	ucsc.edu	37	15	57731090	57731090	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	37	4	29	0	74	74	0	0	0
HERC1	8925	bcgsc.ca	37	15	64019985	64019985	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	101	8	90	0	3	3	0	0	0
DAPK2	23604	ucsc.edu	37	15	64204365	64204365	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	40	4	48	0	4	4	0	0	0
PARP16	54956	ucsc.edu	37	15	65559076	65559076	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	37	4	48	0	16	16	0	0	0
MEGF11	84465	ucsc.edu	37	15	66207910	66207910	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	44	4	40	0	0	0	0	0	0
AAGAB	79719	ucsc.edu	37	15	67495915	67495915	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	40	4	39	0	73	73	0	0	0
AAGAB	79719	bcgsc.ca	37	15	67500947	67500947	+	Missense_Mutation	SNP	C	C	A	rs201284578	alternate_allele	TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	143	10	127	0	40	40	0	0	0
STRA6	64220	ucsc.edu	37	15	74488468	74488468	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	37	5	31	0	0	0	0	0	0
SIN3A	25942	bcgsc.ca	37	15	75685139	75685139	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	107	7	123	1	21	21	0	0	0
ADAMTS7	11173	bcgsc.ca	37	15	79058002	79058002	+	Silent	SNP	C	C	A	rs143941580	alternate_allele	TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	155	9	197	4	1	1	0	0	0
ARNT2	9915	ucsc.edu	37	15	80762616	80762616	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	39	4	41	0	21	21	0	0	0
ZNF592	9640	hgsc.bcm.edu;bcgsc.ca	37	15	85342401	85342401	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	183	11	239	2	46	46	0	0	0
AKAP13	11214	ucsc.edu;bcgsc.ca	37	15	86123378	86123378	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	83	8	127	0	12	12	0	0	0
TICRR	90381	bcgsc.ca	37	15	90167030	90167030	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	125	8	187	2	0	0	0	0	0
PEX11A	8800	bcgsc.ca	37	15	90226613	90226613	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	357	17	410	2	24	24	0	0	0
CRTC3	64784	hgsc.bcm.edu	37	15	91172481	91172481	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	94	5	106	1	45	45	0	0	0
MCTP2	55784	ucsc.edu	37	15	94927335	94927335	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	40	4	44	0	8	8	0	0	0
NR2F2	7026	broad.mit.edu	37	15	96877563	96877563	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	159	6	183	0	357	357	0	0	0
PRKXP1	441733	ucsc.edu	37	15	101098950	101098950	+	RNA	SNP	G	G	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	39	4	35	0	25	0	25	0	0
RHOT2	89941	ucsc.edu	37	16	720913	720913	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	33	4	43	0	68	68	0	0	0
CACNA1H	8912	ucsc.edu	37	16	1265548	1265548	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	32	4	25	0	6	6	0	0	0
CLCN7	1186	ucsc.edu	37	16	1509126	1509126	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	40	5	32	0	140	140	0	0	0
MAPK8IP3	23162	hgsc.bcm.edu	37	16	1817800	1817807	+	Frame_Shift_Del	DEL	CCACAGGC	CCACAGGC	-	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	CCACAGGC	CCACAGGC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	66	14	93	0	0	0	0	0	0
MRPS34	65993	bcgsc.ca	37	16	1822493	1822493	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	215	11	161	2	92	92	0	0	0
EME2	197342	bcgsc.ca	37	16	1825335	1825335	+	Silent	SNP	C	C	A	rs200684848	alternate_allele	TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	87	7	52	0	5	5	0	0	0
ABCA17P	650655	ucsc.edu	37	16	2474626	2474626	+	RNA	SNP	G	G	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	24	4	18	0	65	65	0	0	0
FLYWCH1	84256	ucsc.edu	37	16	2979774	2979774	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	41	4	43	0	67	67	0	0	0
FLYWCH1	84256	ucsc.edu	37	16	2980827	2980827	+	Silent	SNP	C	C	A	rs202153698	alternate_allele	TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	32	4	12	0	65	65	0	0	0
ADCY9	115	bcgsc.ca	37	16	4039001	4039001	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	239	12	146	2	0	0	0	0	0
CORO7	79585	ucsc.edu	37	16	4457531	4457531	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	10	4	11	0	20	20	0	0	0
ABAT	18	bcgsc.ca	37	16	8870207	8870207	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	125	8	131	0	0	0	0	0	0
MKL2	57496	bcgsc.ca	37	16	14355285	14355285	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	151	8	129	0	13	13	0	0	0
ARL6IP1	23204	bcgsc.ca	37	16	18805973	18805973	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	222	10	191	0	295	295	0	0	0
TMC5	79838	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	19490814	19490814	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	389	116	344	1	0	0	0	0	0
DNAH3	55567	bcgsc.ca	37	16	21073816	21073816	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	166	9	96	0	0	0	0	0	0
VWA3A	146177	ucsc.edu	37	16	22159559	22159559	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	16	4	12	0	0	0	0	0	0
EEF2K	29904	ucsc.edu	37	16	22274500	22274500	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	28	4	26	0	0	0	0	0	0
USP31	57478	ucsc.edu;bcgsc.ca	37	16	23080837	23080837	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	41	6	28	0	8	8	0	0	0
ERN2	10595	ucsc.edu	37	16	23717720	23717720	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	15	4	11	0	0	0	0	0	0
TNRC6A	27327	broad.mit.edu	37	16	24807240	24807240	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	312	7	260	0	0	0	0	0	0
ARHGAP17	55114	bcgsc.ca	37	16	24942603	24942603	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	210	10	153	1	33	33	0	0	0
KIAA0556	23247	bcgsc.ca	37	16	27786298	27786298	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	132	10	120	0	22	22	0	0	0
SRCAP	10847	bcgsc.ca	37	16	30749632	30749632	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	113	8	94	1	54	54	0	0	0
PRSS53	339105	ucsc.edu	37	16	31095941	31095941	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	21	4	17	0	1	1	0	0	0
PRSS36	146547	ucsc.edu	37	16	31150600	31150600	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	41	4	37	0	3	3	0	0	0
ITGAX	3687	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	31383749	31383749	+	Silent	SNP	G	G	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	130	68	101	1	25	24	1	0	0
SLC5A2	6524	ucsc.edu	37	16	31501725	31501725	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	58	6	25	0	137	137	0	0	0
C16orf70	80262	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	67168085	67168085	+	Silent	SNP	T	T	C	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	175	52	109	0	11	8	3	0	0
FAM65A	79567	ucsc.edu	37	16	67577132	67577132	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	25	4	13	0	126	126	0	0	0
SLC12A4	6560	bcgsc.ca	37	16	67979970	67979970	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	85	7	88	0	90	90	0	0	0
SMPD3	55512	ucsc.edu	37	16	68405665	68405665	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	52	6	34	0	0	0	0	0	0
CDH3	1001	bcgsc.ca	37	16	68729765	68729765	+	Missense_Mutation	SNP	C	C	A	rs200361366	alternate_allele	TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	99	7	79	0	0	0	0	0	0
SF3B3	23450	bcgsc.ca	37	16	70598999	70598999	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	203	10	158	0	88	88	0	0	0
ZFHX3	463	bcgsc.ca	37	16	72923800	72923800	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	97	7	54	0	7	7	0	0	0
MLYCD	23417	bcgsc.ca	37	16	83940666	83940666	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	229	13	153	0	39	39	0	0	0
ATP2C2	9914	bcgsc.ca	37	16	84476139	84476139	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	416	16	336	4	0	0	0	0	0
FBXO31	79791	ucsc.edu	37	16	87376549	87376549	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	39	4	19	0	0	0	0	0	0
MVD	4597	bcgsc.ca	37	16	88723976	88723976	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	92	8	68	0	1	1	0	0	0
SPG7	6687	ucsc.edu	37	16	89590435	89590435	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	50	5	47	0	89	89	0	0	0
RTN4RL1	146760	ucsc.edu	37	17	1840106	1840106	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	48	5	38	0	0	0	0	0	0
MNT	4335	ucsc.edu	37	17	2290478	2290478	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	39	4	30	0	27	27	0	0	0
C17orf85	55421	bcgsc.ca	37	17	3724614	3724614	+	Missense_Mutation	SNP	C	C	A	rs200384098	alternate_allele	TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	184	9	172	3	25	25	0	0	0
CAMKK1	84254	bcgsc.ca	37	17	3785602	3785602	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	169	10	158	1	0	0	0	0	0
CXCL16	58191	ucsc.edu	37	17	4638441	4638441	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	63	6	54	0	184	184	0	0	0
MINK1	50488	ucsc.edu	37	17	4800578	4800578	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	63	6	60	0	77	77	0	0	0
EFNB3	1949	bcgsc.ca	37	17	7611316	7611316	+	Missense_Mutation	SNP	G	G	T	rs201123805	alternate_allele	TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	115	7	105	1	0	0	0	0	0
GUCY2D	3000	ucsc.edu	37	17	7918082	7918082	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	41	4	22	1	0	0	0	0	0
NTN1	9423	ucsc.edu	37	17	8926202	8926202	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	24	4	26	0	0	0	0	0	0
MYH13	8735	broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	10267725	10267725	+	Silent	SNP	C	C	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	64	13	53	0	0	0	0	0	0
COPS3	8533	bcgsc.ca	37	17	17152311	17152311	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	195	9	149	1	97	97	0	0	0
MYO15A	51168	ucsc.edu	37	17	18075034	18075034	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	53	5	61	0	0	0	0	0	0
MFAP4	4239	ucsc.edu	37	17	19289656	19289656	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	36	4	26	0	8	8	0	0	0
CCDC144C	348254	broad.mit.edu	37	17	20243242	20243242	+	RNA	SNP	A	A	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	186	66	128	0	1	1	0	0	0
FLJ36000	0	broad.mit.edu	37	17	21904139	21904139	+	RNA	SNP	T	T	G	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	53	4	45	0	0	0	0	0	0
TMEM97	27346	ucsc.edu	37	17	26653776	26653776	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	45	5	55	1	9	9	0	0	0
VTN	7448	bcgsc.ca	37	17	26695555	26695555	+	Missense_Mutation	SNP	C	C	A	rs201659420		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	133	9	97	0	0	0	0	0	0
ERAL1	26284	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	27182278	27182278	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	95	56	85	0	110	39	71	0	0
MYO19	80179	ucsc.edu	37	17	34871025	34871025	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	41	4	39	0	0	0	0	0	0
KCNH4	23415	ucsc.edu	37	17	40318469	40318469	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	41	6	42	0	0	0	0	0	0
BRCA1	672	bcgsc.ca	37	17	41243810	41243810	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	182	9	147	1	6	6	0	0	0
MPP3	4356	ucsc.edu	37	17	41909259	41909259	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	36	4	27	0	0	0	0	0	0
ACBD4	79777	ucsc.edu	37	17	43220856	43220856	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	42	4	56	0	35	35	0	0	0
FMNL1	752	ucsc.edu	37	17	43311465	43311465	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	48	5	42	0	9	9	0	0	0
IGF2BP1	10642	bcgsc.ca	37	17	47121337	47121337	+	Silent	SNP	C	C	A	rs201936728	alternate_allele	TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	156	10	102	0	0	0	0	0	0
B4GALNT2	124872	ucsc.edu	37	17	47246238	47246238	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	29	4	36	0	0	0	0	0	0
MTMR4	9110	bcgsc.ca	37	17	56573371	56573371	+	Missense_Mutation	SNP	C	C	A	rs145309683	alternate_allele	TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	525	18	417	7	43	43	0	0	0
TEX14	56155	ucsc.edu	37	17	56643157	56643157	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	42	4	29	0	1	1	0	0	0
ERN1	2081	ucsc.edu	37	17	62149445	62149445	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	51	5	31	0	3	3	0	0	0
BPTF	2186	bcgsc.ca	37	17	65871104	65871104	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	187	11	123	1	27	27	0	0	0
BPTF	2186	bcgsc.ca	37	17	65907679	65907679	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	81	8	68	0	22	22	0	0	0
ABCA8	10351	bcgsc.ca	37	17	66937003	66937003	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	92	8	80	0	8	8	0	0	0
CDC42EP4	23580	bcgsc.ca	37	17	71282518	71282518	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	96	9	72	1	50	50	0	0	0
GPR142	350383	bcgsc.ca	37	17	72363722	72363722	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	103	9	99	1	0	0	0	0	0
OTOP2	92736	ucsc.edu	37	17	72920907	72920907	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	29	4	24	0	0	0	0	0	0
CDR2L	30850	ucsc.edu	37	17	72999980	72999980	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	24	4	16	0	38	38	0	0	0
GGA3	23163	ucsc.edu	37	17	73234995	73234995	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	51	5	31	0	0	0	0	0	0
KIAA0195	9772	ucsc.edu	37	17	73492083	73492083	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	44	5	38	0	81	81	0	0	0
LLGL2	3993	ucsc.edu	37	17	73554657	73554657	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	38	4	19	0	111	111	0	0	0
TEN1-CDK3	100529145	bcgsc.ca	37	17	73999215	73999215	+	RNA	SNP	G	G	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	216	11	184	1	0	0	0	0	0
EXOC7	23265	ucsc.edu	37	17	74084587	74084587	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	43	4	35	0	160	160	0	0	0
SYNGR2	9144	hgsc.bcm.edu;bcgsc.ca	37	17	76167099	76167099	+	Missense_Mutation	SNP	C	C	A	rs147752279	alternate_allele	TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	90	7	70	0	294	294	0	0	0
RNF213	57674	bcgsc.ca	37	17	78341809	78341809	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	258	16	214	4	130	130	0	0	0
MYOM1	8736	ucsc.edu	37	18	3168826	3168826	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	47	6	53	1	0	0	0	0	0
DLGAP1	9229	broad.mit.edu;bcgsc.ca	37	18	3499238	3499238	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	25	6	16	0	2	2	0	0	0
LAMA1	284217	ucsc.edu	37	18	6966261	6966261	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	43	5	48	0	4	4	0	0	0
LAMA1	284217	ucsc.edu	37	18	7007165	7007165	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	31	4	43	0	4	4	0	0	0
LAMA1	284217	ucsc.edu	37	18	7007192	7007192	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	33	4	50	0	1	1	0	0	0
SOGA2	23255	ucsc.edu	37	18	8825934	8825934	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	38	4	39	0	4	4	0	0	0
ANKRD12	23253	bcgsc.ca	37	18	9256230	9256230	+	Missense_Mutation	SNP	G	G	T	rs35253121	byfrequency;alternate_allele	TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	204	12	196	0	24	24	0	0	0
MPPE1	65258	ucsc.edu;bcgsc.ca	37	18	11889485	11889485	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	71	8	73	0	1	1	0	0	0
LAMA3	3909	ucsc.edu	37	18	21338429	21338429	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	60	6	58	0	1	1	0	0	0
TAF4B	6875	ucsc.edu	37	18	23901164	23901164	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	52	5	47	0	0	0	0	0	0
RNF138	51444	bcgsc.ca	37	18	29704751	29704751	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	77	7	91	0	14	14	0	0	0
SLC14A2	8170	ucsc.edu	37	18	43246991	43246991	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	49	5	53	0	0	0	0	0	0
LIPG	9388	ucsc.edu	37	18	47091703	47091703	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	41	4	58	1	0	0	0	0	0
NEDD4L	23327	ucsc.edu	37	18	56063446	56063446	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	35	4	41	0	53	53	0	0	0
SERPINB12	89777	bcgsc.ca	37	18	61231315	61231315	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	111	8	98	0	0	0	0	0	0
ZNF407	55628	ucsc.edu	37	18	72775792	72775792	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	50	5	51	0	7	7	0	0	0
ZNF516	9658	ucsc.edu	37	18	74074491	74074491	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	49	6	71	1	13	13	0	0	0
ZNF236	7776	bcgsc.ca	37	18	74631742	74631742	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	123	8	118	0	0	0	0	0	0
ADNP2	22850	bcgsc.ca	37	18	77894777	77894777	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	88	7	104	1	26	26	0	0	0
PARD6G	84552	ucsc.edu	37	18	77960800	77960800	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	48	5	48	0	4	4	0	0	0
MADCAM1	8174	ucsc.edu	37	19	498521	498521	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	39	4	39	0	0	0	0	0	0
REXO1	57455	ucsc.edu	37	19	1816258	1816258	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	19	4	14	0	39	39	0	0	0
AP3D1	8943	ucsc.edu	37	19	2118692	2118692	+	Missense_Mutation	SNP	C	C	A	rs34569645	byfrequency;alternate_allele	TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	51	5	50	0	100	100	0	0	0
NFIC	4782	ucsc.edu	37	19	3435155	3435155	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	31	5	28	0	53	53	0	0	0
DOHH	83475	ucsc.edu	37	19	3494102	3494102	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	38	4	42	0	0	0	0	0	0
KDM4B	23030	bcgsc.ca	37	19	5041222	5041222	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	142	9	154	1	36	36	0	0	0
LONP1	9361	ucsc.edu	37	19	5696708	5696708	+	Silent	SNP	C	C	A	rs138649872	alternate_allele	TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	42	4	46	0	156	156	0	0	0
ZNF557	79230	ucsc.edu	37	19	7081459	7081459	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	36	4	42	0	0	0	0	0	0
PNPLA6	10908	bcgsc.ca	37	19	7621350	7621350	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	281	12	300	6	0	0	0	0	0
LRRC8E	80131	bcgsc.ca	37	19	7963610	7963610	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	196	10	205	2	4	4	0	0	0
MUC16	94025	ucsc.edu	37	19	9085273	9085273	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	39	4	53	0	0	0	0	0	0
ZNF559	84527	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	9453288	9453288	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	72	20	70	0	0	0	0	0	0
ZNF559	84527	hgsc.bcm.edu;bcgsc.ca	37	19	9453293	9453293	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	74	26	71	0	6	6	0	0	0
ZNF561	93134	bcgsc.ca	37	19	9720974	9720974	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	164	11	177	0	15	15	0	0	0
COL5A3	50509	ucsc.edu	37	19	10116872	10116872	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	23	5	18	0	0	0	0	0	0
PPAN	56342	ucsc.edu	37	19	10218644	10218644	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	40	4	33	0	0	0	0	0	0
ICAM5	7087	ucsc.edu	37	19	10405235	10405235	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	41	4	46	0	0	0	0	0	0
PDE4A	5141	bcgsc.ca	37	19	10578032	10578032	+	Missense_Mutation	SNP	G	G	T	rs201380135	alternate_allele	TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	136	7	159	0	5	5	0	0	0
KANK2	25959	ucsc.edu	37	19	11304098	11304098	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	42	4	57	0	23	23	0	0	0
KANK2	25959	ucsc.edu	37	19	11304699	11304699	+	Silent	SNP	G	G	T	rs143435441	alternate_allele	TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	53	5	41	0	41	41	0	0	0
DOCK6	57572	ucsc.edu	37	19	11363551	11363551	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	42	4	42	0	5	5	0	0	0
ZNF563	147837	ucsc.edu	37	19	12432147	12432147	+	Splice_Site	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	27	4	30	0	0	0	0	0	0
ZNF709	163051	bcgsc.ca	37	19	12574851	12574851	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	217	12	215	4	6	6	0	0	0
MAN2B1	4125	ucsc.edu	37	19	12769284	12769284	+	Missense_Mutation	SNP	G	G	T	rs121434333	alternate_allele	TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	42	4	46	0	138	138	0	0	0
C19orf57	79173	ucsc.edu	37	19	14003599	14003599	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	42	4	61	0	0	0	0	0	0
CC2D1A	54862	ucsc.edu	37	19	14023197	14023197	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	18	4	26	0	37	37	0	0	0
CLEC17A	388512	ucsc.edu	37	19	14705606	14705606	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	34	4	36	0	0	0	0	0	0
EMR2	30817	ucsc.edu	37	19	14865929	14865929	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	50	6	46	0	0	0	0	0	0
NOTCH3	4854	ucsc.edu	37	19	15290900	15290900	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	68	7	90	2	3	3	0	0	0
NOTCH3	4854	ucsc.edu	37	19	15302249	15302249	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	36	4	49	0	4	4	0	0	0
EPS15L1	58513	ucsc.edu	37	19	16515538	16515538	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	63	6	71	1	26	26	0	0	0
F2RL3	9002	ucsc.edu	37	19	17000653	17000653	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	23	4	28	0	0	0	0	0	0
ANO8	57719	bcgsc.ca	37	19	17441735	17441735	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	206	11	257	3	18	18	0	0	0
MAP1S	55201	ucsc.edu	37	19	17845145	17845145	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	44	5	66	1	34	34	0	0	0
PDE4C	5143	ucsc.edu	37	19	18322052	18322052	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	38	4	71	0	0	0	0	0	0
PGPEP1	54858	ucsc.edu	37	19	18474301	18474301	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	37	4	45	0	68	68	0	0	0
GDF15	9518	ucsc.edu	37	19	18499253	18499253	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	27	5	42	0	345	345	0	0	0
KLHL26	55295	ucsc.edu	37	19	18779557	18779557	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	41	4	33	0	14	14	0	0	0
GATAD2A	54815	bcgsc.ca	37	19	19613158	19613158	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	79	7	108	0	56	56	0	0	0
ZNF506	440515	ucsc.edu	37	19	19906134	19906134	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	29	4	48	0	7	7	0	0	0
ZNF737	100129842	ucsc.edu	37	19	20728763	20728763	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	49	5	61	1	7	7	0	0	0
CCNE1	898	bcgsc.ca	37	19	30313487	30313487	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	185	11	187	1	3	3	0	0	0
TSHZ3	57616	ucsc.edu	37	19	31767882	31767882	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	64	6	71	0	0	0	0	0	0
TMEM147	10430	ucsc.edu	37	19	36038328	36038328	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	42	4	33	0	128	128	0	0	0
ZBTB32	27033	ucsc.edu	37	19	36205980	36205980	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	53	5	50	0	0	0	0	0	0
MLL4	8085	ucsc.edu	37	19	36223190	36223190	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	22	4	18	0	20	20	0	0	0
THAP8	199745	ucsc.edu	37	19	36545087	36545087	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	41	4	43	0	9	9	0	0	0
RASGRP4	115727	ucsc.edu	37	19	38905638	38905638	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	31	4	27	0	0	0	0	0	0
PAPL	0	bcgsc.ca	37	19	39590971	39590971	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	151	9	169	1	0	0	0	0	0
NUMBL	9253	ucsc.edu	37	19	41183262	41183262	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	41	4	52	0	3	3	0	0	0
ATP1A3	478	bcgsc.ca	37	19	42492118	42492118	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	127	8	158	2	0	0	0	0	0
TMEM145	284339	bcgsc.ca	37	19	42818481	42818481	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	177	9	183	3	0	0	0	0	0
LYPD3	27076	bcgsc.ca	37	19	43969648	43969648	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	133	10	134	0	0	0	0	0	0
RELB	5971	ucsc.edu	37	19	45528638	45528638	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	27	4	28	0	40	40	0	0	0
ERCC2	2068	ucsc.edu	37	19	45860620	45860620	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	39	4	33	0	0	0	0	0	0
FOSB	2354	bcgsc.ca	37	19	45971968	45971968	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	148	9	148	1	2	2	0	0	0
STRN4	29888	ucsc.edu	37	19	47230779	47230779	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	36	4	26	0	80	80	0	0	0
LMTK3	114783	ucsc.edu	37	19	49013313	49013313	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	45	5	50	0	1	1	0	0	0
BCAT2	587	bcgsc.ca	37	19	49309888	49309888	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	224	10	227	0	293	293	0	0	0
PLEKHA4	57664	ucsc.edu	37	19	49351223	49351223	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	38	4	52	0	67	67	0	0	0
MED25	81857	ucsc.edu	37	19	50339168	50339168	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	45	5	40	0	69	69	0	0	0
TBC1D17	79735	bcgsc.ca	37	19	50387772	50387772	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	126	8	194	2	82	82	0	0	0
POLD1	5424	bcgsc.ca	37	19	50906823	50906823	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	112	8	148	1	27	27	0	0	0
HAS1	3036	ucsc.edu	37	19	52217192	52217192	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	43	5	37	0	0	0	0	0	0
LILRP2	79166	ucsc.edu	37	19	55221458	55221458	+	RNA	SNP	G	G	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	42	4	45	0	0	0	0	0	0
TNNI3	7137	bcgsc.ca	37	19	55665438	55665438	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	113	8	130	0	0	0	0	0	0
HSPBP1	23640	ucsc.edu	37	19	55777303	55777303	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	34	4	33	0	111	111	0	0	0
CCDC106	29903	ucsc.edu	37	19	56160800	56160800	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	42	5	58	1	111	111	0	0	0
ZNF606	80095	bcgsc.ca	37	19	58500038	58500038	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	266	13	284	1	6	6	0	0	0
ZNF135	7694	ucsc.edu	37	19	58579098	58579098	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	27	4	45	0	10	10	0	0	0
ZNF274	10782	bcgsc.ca	37	19	58724137	58724137	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	155	9	170	2	23	23	0	0	0
FAM110C	642273	bcgsc.ca	37	2	41613	41613	+	Silent	SNP	G	G	T	rs151311604	by1000genomes;alternate_allele	TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	130	9	125	1	12	12	0	0	0
CPSF3	51692	bcgsc.ca	37	2	9576435	9576435	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	115	10	151	1	43	43	0	0	0
NOL10	79954	ucsc.edu;bcgsc.ca	37	2	10822140	10822140	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	45	6	51	0	12	12	0	0	0
LPIN1	23175	ucsc.edu	37	2	11955274	11955274	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	67	6	65	1	13	13	0	0	0
OTOF	9381	ucsc.edu	37	2	26703836	26703836	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	36	4	68	0	0	0	0	0	0
SUPT7L	9913	bcgsc.ca	37	2	27878438	27878438	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	111	9	129	0	55	55	0	0	0
WDR43	23160	ucsc.edu	37	2	29165213	29165213	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	36	4	45	0	35	35	0	0	0
XDH	7498	bcgsc.ca	37	2	31611136	31611136	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	137	9	119	2	2	2	0	0	0
BIRC6	57448	ucsc.edu	37	2	32667468	32667468	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	35	4	30	0	12	12	0	0	0
BIRC6	57448	ucsc.edu	37	2	32842810	32842810	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	41	5	33	0	50	50	0	0	0
HEATR5B	54497	ucsc.edu	37	2	37259899	37259899	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	44	4	44	0	14	14	0	0	0
HNRPLL	92906	ucsc.edu	37	2	38811043	38811043	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	40	4	27	0	20	20	0	0	0
THADA	63892	ucsc.edu	37	2	43819124	43819124	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	13	4	20	0	5	5	0	0	0
SLC3A1	6519	ucsc.edu	37	2	44502778	44502778	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	37	5	28	0	0	0	0	0	0
PRKCE	5581	ucsc.edu	37	2	46378224	46378224	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	43	4	51	0	10	10	0	0	0
C2orf73	129852	ucsc.edu	37	2	54587346	54587346	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	21	4	25	0	0	0	0	0	0
SPTBN1	6711	bcgsc.ca	37	2	54849566	54849566	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	131	9	116	0	227	227	0	0	0
CCDC88A	55704	bcgsc.ca	37	2	55602020	55602020	+	Splice_Site	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	154	10	151	2	0	0	0	0	0
FANCL	55120	ucsc.edu	37	2	58425742	58425742	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	45	5	66	1	1	1	0	0	0
SNRNP27	11017	bcgsc.ca	37	2	70122252	70122252	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	197	9	205	3	45	45	0	0	0
CD207	50489	ucsc.edu;bcgsc.ca	37	2	71060052	71060052	+	Silent	SNP	C	C	A	rs142863447	by1000genomes;alternate_allele	TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	72	7	61	0	0	0	0	0	0
ANKRD53	79998	ucsc.edu	37	2	71206871	71206871	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	36	4	50	0	2	2	0	0	0
ZNF638	27332	bcgsc.ca	37	2	71576910	71576910	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	185	9	218	3	24	24	0	0	0
ALMS1	7840	bcgsc.ca	37	2	73677919	73677919	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	186	11	225	2	7	7	0	0	0
SEMA4F	10505	bcgsc.ca	37	2	74889902	74889902	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	213	10	209	2	7	7	0	0	0
HK2	3099	ucsc.edu	37	2	75113788	75113788	+	Missense_Mutation	SNP	C	C	A	rs146476722	byfrequency;alternate_allele	TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	66	6	78	1	0	0	0	0	0
USP39	10713	bcgsc.ca	37	2	85850772	85850772	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	395	15	385	6	1	1	0	0	0
CD8A	925	bcgsc.ca	37	2	87013079	87013079	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	221	10	215	0	4	4	0	0	0
ANKRD36BP2	645784	ucsc.edu	37	2	89084304	89084304	+	RNA	SNP	G	G	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	37	4	22	0	0	0	0	0	0
SNRNP200	23020	ucsc.edu	37	2	96961396	96961396	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	36	4	32	0	0	0	0	0	0
ARID5A	10865	ucsc.edu	37	2	97217063	97217063	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	41	4	43	0	13	13	0	0	0
SH3RF3	344558	ucsc.edu	37	2	110053584	110053584	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	30	4	36	0	12	12	0	0	0
IL36RN	26525	ucsc.edu	37	2	113819722	113819722	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	37	4	53	0	0	0	0	0	0
PTPN4	5775	ucsc.edu;bcgsc.ca	37	2	120635092	120635092	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	69	9	73	0	5	5	0	0	0
GPR17	2840	bcgsc.ca	37	2	128408630	128408630	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	82	6	95	0	0	0	0	0	0
UGGT1	56886	bcgsc.ca	37	2	128917201	128917201	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	138	9	139	0	18	18	0	0	0
NEB	4703	ucsc.edu	37	2	152364570	152364570	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	28	4	38	0	0	0	0	0	0
NEB	4703	ucsc.edu	37	2	152421592	152421592	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	40	4	34	0	0	0	0	0	0
FMNL2	114793	ucsc.edu	37	2	153476165	153476165	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	32	4	33	0	42	42	0	0	0
TANK	10010	ucsc.edu	37	2	162036222	162036222	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	51	5	62	0	58	57	1	0	0
SLC38A11	151258	ucsc.edu	37	2	165768155	165768155	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	39	4	48	0	0	0	0	0	0
STK39	27347	ucsc.edu	37	2	168812064	168812064	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	38	4	40	0	55	55	0	0	0
ABCB11	8647	bcgsc.ca	37	2	169847418	169847418	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	191	9	197	1	0	0	0	0	0
TTN	7273	bcgsc.ca	37	2	179648811	179648811	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	122	10	140	1	0	0	0	0	0
MYO1B	4430	bcgsc.ca	37	2	192265124	192265124	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	158	9	161	0	30	30	0	0	0
SF3B1	23451	bcgsc.ca	37	2	198274609	198274609	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	115	7	131	1	100	100	0	0	0
MOB4	25843	ucsc.edu	37	2	198380822	198380822	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	19	4	24	0	24	24	0	0	0
IGFBP2	3485	ucsc.edu	37	2	217525369	217525369	+	Silent	SNP	C	C	A	rs200421058	alternate_allele	TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	42	4	45	0	70	70	0	0	0
ZNF142	7701	ucsc.edu	37	2	219503454	219503454	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	47	5	51	1	10	9	1	0	0
CRYBA2	1412	ucsc.edu	37	2	219855118	219855118	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	40	4	44	0	0	0	0	0	0
CCDC108	255101	ucsc.edu	37	2	219874169	219874169	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	46	5	50	0	0	0	0	0	0
OBSL1	23363	ucsc.edu	37	2	220418409	220418409	+	Splice_Site	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	39	5	21	0	0	0	0	0	0
NYAP2	57624	ucsc.edu	37	2	226378288	226378288	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	37	5	51	0	0	0	0	0	0
COL4A4	1286	bcgsc.ca	37	2	227915857	227915857	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	138	8	154	2	18	18	0	0	0
COL4A4	1286	bcgsc.ca	37	2	227973298	227973298	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	209	14	184	2	0	0	0	0	0
DIS3L2	129563	hgsc.bcm.edu;bcgsc.ca	37	2	233195445	233195445	+	Missense_Mutation	SNP	C	C	A	rs113330536	alternate_allele	TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	260	13	294	2	28	28	0	0	0
CHRNG	1146	ucsc.edu	37	2	233408077	233408077	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	33	4	40	0	0	0	0	0	0
RAB17	64284	ucsc.edu	37	2	238486769	238486769	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	49	5	37	0	189	189	0	0	0
ESPNL	339768	ucsc.edu	37	2	239039023	239039023	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	20	4	35	0	0	0	0	0	0
LOC643387	0	ucsc.edu	37	2	239140776	239140776	+	RNA	SNP	G	G	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	44	5	39	0	0	0	0	0	0
PASK	23178	bcgsc.ca	37	2	242075339	242075339	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	150	10	168	3	6	6	0	0	0
PPP1R7	5510	ucsc.edu	37	2	242097275	242097275	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	49	5	64	0	0	0	0	0	0
DEFB128	245939	bcgsc.ca	37	20	170228	170228	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	191	10	194	1	0	0	0	0	0
CSNK2A1	1457	bcgsc.ca	37	20	472936	472936	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	102	7	93	0	71	70	0	0	1
TMC2	117532	ucsc.edu	37	20	2577877	2577877	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	51	6	54	0	0	0	0	0	0
LZTS3	0	ucsc.edu	37	20	3147497	3147497	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	39	4	56	0	26	26	0	0	0
CHGB	1114	ucsc.edu	37	20	5905689	5905689	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	62	6	69	0	0	0	0	0	0
FLRT3	23767	bcgsc.ca	37	20	14308036	14308036	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	121	8	137	1	38	38	0	0	0
CSRP2BP	57325	ucsc.edu	37	20	18139770	18139770	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	73	7	73	0	8	8	0	0	0
DUSP15	128853	bcgsc.ca	37	20	30450488	30450488	+	Silent	SNP	C	C	A	rs141277279	alternate_allele	TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	100	7	113	0	52	52	0	0	0
BPIFB3	359710	ucsc.edu	37	20	31656707	31656707	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	66	7	87	0	0	0	0	0	0
GSS	2937	ucsc.edu	37	20	33530797	33530797	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	32	4	30	0	341	341	0	0	0
GDF5	8200	bcgsc.ca	37	20	34022109	34022109	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	226	12	243	1	2	2	0	0	0
NFS1	9054	ucsc.edu	37	20	34268668	34268668	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	40	4	59	0	0	0	0	0	0
EPB41L1	2036	ucsc.edu	37	20	34785946	34785946	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	37	4	57	1	232	232	0	0	0
MROH8	140699	ucsc.edu	37	20	35766358	35766358	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	33	4	43	0	1	1	0	0	0
HNF4A	3172	ucsc.edu	37	20	43052909	43052909	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	34	4	42	0	9	9	0	0	0
KCNK15	60598	ucsc.edu	37	20	43378789	43378789	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	28	4	46	0	2	2	0	0	0
SEMG2	6407	ucsc.edu	37	20	43851834	43851834	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	48	5	67	0	0	0	0	0	0
SDC4	6385	ucsc.edu;bcgsc.ca	37	20	43959148	43959148	+	Silent	SNP	G	G	T	rs188331002	alternate_allele	TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	70	7	73	0	597	597	0	0	0
NCOA5	57727	ucsc.edu	37	20	44691163	44691163	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	53	5	71	1	25	25	0	0	0
ZNF334	55713	ucsc.edu	37	20	45132946	45132946	+	Splice_Site	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	49	5	48	0	0	0	0	0	0
NCOA3	8202	ucsc.edu	37	20	46264255	46264255	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	29	4	42	0	5	5	0	0	0
PREX1	57580	ucsc.edu	37	20	47273719	47273719	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	38	4	45	0	0	0	0	0	0
BCAS4	55653	ucsc.edu	37	20	49458397	49458397	+	Missense_Mutation	SNP	G	G	T	rs202162521	alternate_allele	TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	35	4	32	0	11	11	0	0	0
HELZ2	85441	ucsc.edu	37	20	62202201	62202201	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	37	4	39	0	16	16	0	0	0
APP	351	bcgsc.ca	37	21	27372472	27372472	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	87	7	71	0	1280	1280	0	0	0
LTN1	26046	bcgsc.ca	37	21	30339341	30339341	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	229	11	240	1	4	4	0	0	0
KRTAP13-4	284827	ucsc.edu	37	21	31802966	31802966	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	52	5	76	0	0	0	0	0	0
CBR1	873	bcgsc.ca	37	21	37445138	37445138	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	136	9	145	0	481	480	0	0	1
ETS2	2114	bcgsc.ca	37	21	40188984	40188984	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	102	7	108	0	43	43	0	0	0
SIK1	150094	ucsc.edu	37	21	44836655	44836655	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	40	4	52	0	8	8	0	0	0
AGPAT3	56894	bcgsc.ca	37	21	45391317	45391317	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	180	9	153	1	70	70	0	0	0
ZNF74	7625	ucsc.edu	37	22	20755609	20755609	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	18	4	14	0	6	6	0	0	0
IGLL5	100423062	ucsc.edu	37	22	23237590	23237590	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	47	5	44	0	52	52	0	0	0
CABIN1	23523	ucsc.edu	37	22	24573650	24573650	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	57	6	62	1	66	66	0	0	0
SEZ6L	23544	ucsc.edu	37	22	26688381	26688381	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	27	4	39	0	0	0	0	0	0
HPS4	89781	ucsc.edu;bcgsc.ca	37	22	26862203	26862203	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	51	7	75	1	0	0	0	0	0
TFIP11	24144	ucsc.edu	37	22	26895232	26895232	+	Silent	SNP	G	G	T	rs144151697	byfrequency;alternate_allele	TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	62	7	64	1	20	20	0	0	0
ZNRF3	84133	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	29445350	29445350	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	55	15	69	0	23	12	11	0	0
AP1B1	162	ucsc.edu	37	22	29754952	29754952	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	33	4	28	1	0	0	0	0	0
SEC14L3	266629	ucsc.edu	37	22	30857668	30857668	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	20	4	17	0	0	0	0	0	0
TOM1	10043	ucsc.edu	37	22	35729474	35729474	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	43	4	55	1	149	149	0	0	0
MYH9	4627	bcgsc.ca	37	22	36689446	36689446	+	Silent	SNP	G	G	T	rs147901502	byfrequency;alternate_allele	TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	106	7	126	0	358	358	0	0	0
MPST	4357	bcgsc.ca	37	22	37420678	37420678	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	27	5	19	0	113	113	0	0	0
TRIOBP	11078	bcgsc.ca	37	22	38121212	38121212	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	188	12	221	1	0	0	0	0	0
PICK1	9463	ucsc.edu	37	22	38470967	38470967	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	40	4	54	1	30	30	0	0	0
SLC16A8	23539	ucsc.edu	37	22	38477917	38477917	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	15	4	11	0	0	0	0	0	0
RNU86	0	ucsc.edu;bcgsc.ca	37	22	39712900	39712900	+	RNA	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	50	7	56	0	2	2	0	0	0
TAB1	10454	ucsc.edu	37	22	39824073	39824073	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	61	6	76	1	62	62	0	0	0
MGAT3	4248	ucsc.edu	37	22	39884585	39884585	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	40	4	47	0	1	1	0	0	0
CACNA1I	8911	ucsc.edu	37	22	40056382	40056382	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	24	4	26	0	0	0	0	0	0
TNRC6B	23112	bcgsc.ca	37	22	40708612	40708612	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	204	11	239	2	9	9	0	0	0
SGSM3	27352	ucsc.edu	37	22	40804433	40804433	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	43	4	54	0	0	0	0	0	0
ACO2	50	ucsc.edu	37	22	41916279	41916279	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	34	4	32	0	1	1	0	0	0
MEI1	150365	ucsc.edu	37	22	42191540	42191540	+	Missense_Mutation	SNP	C	C	A	rs6002488	byfrequency;alternate_allele	TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	42	4	51	0	0	0	0	0	0
SEPT3	55964	ucsc.edu	37	22	42383224	42383224	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	52	5	53	0	3	3	0	0	0
RRP7B	91695	ucsc.edu	37	22	42973917	42973917	+	RNA	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	21	4	26	0	5	5	0	0	0
TTLL12	23170	ucsc.edu	37	22	43572393	43572393	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	29	4	40	0	0	0	0	0	0
FBLN1	2192	bcgsc.ca	37	22	45958824	45958824	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	411	17	439	6	5	5	0	0	0
ATXN10	25814	bcgsc.ca	37	22	46202861	46202861	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	102	9	117	1	202	202	0	0	0
CELSR1	9620	ucsc.edu	37	22	46930387	46930387	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	37	4	30	0	23	23	0	0	0
MOV10L1	54456	ucsc.edu;bcgsc.ca	37	22	50588098	50588098	+	Silent	SNP	G	G	T	rs140980361	alternate_allele	TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	44	6	50	0	0	0	0	0	0
PPP6R2	9701	ucsc.edu	37	22	50878204	50878204	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	32	4	41	0	19	19	0	0	0
CHKB-CPT1B	386593	ucsc.edu	37	22	51010741	51010741	+	RNA	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	50	5	58	0	0	0	0	0	0
CPT1B	1375	bcgsc.ca	37	22	51016339	51016339	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	64	6	55	0	5	5	0	0	0
BRPF1	7862	ucsc.edu	37	3	9785585	9785585	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	35	4	21	0	0	0	0	0	0
FANCD2	2177	bcgsc.ca	37	3	10136016	10136016	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	565	17	421	2	6	6	0	0	0
KCNH8	131096	ucsc.edu	37	3	19479853	19479853	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	40	4	53	0	0	0	0	0	0
ZNF619	285267	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	40529349	40529349	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	115	64	84	0	6	4	2	0	0
CCRL2	9034	bcgsc.ca	37	3	46450375	46450375	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	589	22	426	7	3	3	0	0	0
NBEAL2	23218	ucsc.edu	37	3	47044163	47044163	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	34	4	15	0	21	21	0	0	0
NBEAL2	23218	ucsc.edu	37	3	47044743	47044743	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	57	6	57	0	14	14	0	0	0
NBEAL2	23218	ucsc.edu	37	3	47046526	47046526	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	32	4	17	0	27	27	0	0	0
BSN	8927	bcgsc.ca	37	3	49693153	49693153	+	Missense_Mutation	SNP	C	C	A	rs140934925	alternate_allele	TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	142	10	143	1	1	1	0	0	0
MST1R	4486	bcgsc.ca	37	3	49940117	49940117	+	Missense_Mutation	SNP	C	C	A	rs150736542		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	191	10	167	1	2	2	0	0	0
CACNA2D2	9254	ucsc.edu	37	3	50404913	50404913	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	41	4	32	0	2	2	0	0	0
DOCK3	1795	ucsc.edu	37	3	51112853	51112853	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	39	4	20	0	0	0	0	0	0
RPL29	6159	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	52029445	52029445	+	Silent	SNP	G	G	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	116	26	106	0	0	0	0	0	0
POC1A	25886	ucsc.edu	37	3	52172226	52172226	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	55	5	42	0	7	7	0	0	0
DNAH1	25981	ucsc.edu	37	3	52409372	52409372	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	41	4	32	0	1	1	0	0	0
STAB1	23166	ucsc.edu	37	3	52538090	52538090	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	12	4	15	0	4	4	0	0	0
PRKCD	5580	bcgsc.ca	37	3	53222768	53222768	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	136	8	139	2	27	27	0	0	0
DCP1A	55802	ucsc.edu	37	3	53381425	53381425	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	41	4	36	1	15	15	0	0	0
PDE12	201626	bcgsc.ca	37	3	57543371	57543371	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	175	12	148	0	60	60	0	0	0
PTPRG	5793	bcgsc.ca	37	3	62188894	62188894	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	238	12	182	2	59	59	0	0	0
LMOD3	56203	ucsc.edu	37	3	69167924	69167924	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	49	5	61	0	0	0	0	0	0
TOMM70A	9868	bcgsc.ca	37	3	100100548	100100548	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	111	7	87	0	230	229	0	1	0
WDR52	55779	ucsc.edu	37	3	113092404	113092404	+	Splice_Site	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	38	4	33	0	0	0	0	0	0
QTRTD1	79691	bcgsc.ca	37	3	113798851	113798851	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	259	11	204	1	8	8	0	0	0
GPR156	165829	bcgsc.ca	37	3	119911799	119911799	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	153	8	115	0	0	0	0	0	0
HGD	3081	broad.mit.edu	37	3	120366724	120366724	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	261	7	211	0	0	0	0	0	0
POLQ	10721	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	121168266	121168266	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	395	195	343	1	0	0	0	0	0
CSTA	1475	bcgsc.ca	37	3	122044172	122044172	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	161	9	126	1	10	10	0	0	0
KPNA1	3836	ucsc.edu	37	3	122146564	122146564	+	Splice_Site	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	50	5	41	0	0	0	0	0	0
KALRN	8997	ucsc.edu;bcgsc.ca	37	3	124160890	124160890	+	Silent	SNP	C	C	A	rs184463395	alternate_allele	TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	42	6	38	0	17	17	0	0	0
KALRN	8997	bcgsc.ca	37	3	124415000	124415000	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	284	17	236	2	0	0	0	0	0
ALDH1L1	10840	ucsc.edu	37	3	125849067	125849067	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	43	4	30	0	0	0	0	0	0
CCDC37	348807	bcgsc.ca	37	3	126152009	126152009	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	167	10	140	0	0	0	0	0	0
TPRA1	131601	ucsc.edu	37	3	127294885	127294885	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	36	4	46	0	1	1	0	0	0
CPNE4	131034	bcgsc.ca	37	3	131261579	131261579	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	110	9	85	0	0	0	0	0	0
SLCO2A1	6578	ucsc.edu	37	3	133666245	133666245	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	48	5	32	0	13	13	0	0	0
VEPH1	79674	bcgsc.ca	37	3	156978954	156978954	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	189	12	170	0	19	19	0	0	0
KPNA4	3840	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	160249255	160249255	+	Silent	SNP	A	A	G	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	235	128	182	0	0	0	0	0	0
PLD1	5337	bcgsc.ca	37	3	171410132	171410132	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	142	9	94	0	0	0	0	0	0
KCNMB3	27094	bcgsc.ca	37	3	178968832	178968832	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	162	9	145	2	0	0	0	0	0
SOX2	6657	ucsc.edu	37	3	181430645	181430645	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	36	4	20	0	0	0	0	0	0
ABCC5	10057	bcgsc.ca	37	3	183667658	183667658	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	153	10	131	1	31	31	0	0	0
CLCN2	1181	ucsc.edu	37	3	184070542	184070542	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	37	4	30	0	30	30	0	0	0
CHRD	8646	ucsc.edu	37	3	184104472	184104472	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	34	4	27	0	9	9	0	0	0
DGKG	1608	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	186006591	186006591	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	420	97	346	0	0	0	0	0	0
LEPREL1	55214	ucsc.edu	37	3	189838050	189838050	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	39	4	29	0	0	0	0	0	0
MUC4	4585	broad.mit.edu	37	3	195516451	195516451	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	156	5	140	0	0	0	0	0	0
TNK2	10188	ucsc.edu	37	3	195595543	195595543	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	32	4	25	0	9	9	0	0	0
NELFA	7469	ucsc.edu	37	4	1985758	1985758	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	36	4	36	0	47	47	0	0	0
SH3BP2	6452	ucsc.edu	37	4	2824666	2824666	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	41	4	54	1	0	0	0	0	0
MFSD10	10227	ucsc.edu	37	4	2933829	2933829	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	40	5	59	0	83	83	0	0	0
EVC2	132884	bcgsc.ca	37	4	5630388	5630388	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	121	9	127	3	16	16	0	0	0
EVC2	132884	ucsc.edu	37	4	5667346	5667346	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	39	6	63	0	15	15	0	0	0
JAKMIP1	152789	ucsc.edu	37	4	6114542	6114542	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	61	6	81	1	0	0	0	0	0
SLC2A9	56606	bcgsc.ca	37	4	9982231	9982231	+	Silent	SNP	G	G	T	rs139449249	alternate_allele	TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	72	7	90	1	161	161	0	0	0
BOD1L1	259282	bcgsc.ca	37	4	13616973	13616973	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	336	18	368	4	8	8	0	0	0
CLRN2	645104	bcgsc.ca	37	4	17528678	17528678	+	Silent	SNP	G	G	T	rs151100539	alternate_allele	TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	157	8	175	1	0	0	0	0	0
LAP3	51056	ucsc.edu	37	4	17583917	17583917	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	42	4	49	0	0	0	0	0	0
SLIT2	9353	ucsc.edu	37	4	20533668	20533668	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	59	6	65	0	0	0	0	0	0
SLC34A2	10568	ucsc.edu	37	4	25678271	25678271	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	52	6	50	0	35	35	0	0	0
RBPJ	3516	ucsc.edu	37	4	26422272	26422272	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	62	7	58	1	27	27	0	0	0
RPL9	6133	ucsc.edu	37	4	39458152	39458152	+	Missense_Mutation	SNP	G	G	T	rs200276230	alternate_allele	TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	42	4	46	0	0	0	0	0	0
LIMCH1	22998	ucsc.edu	37	4	41668680	41668680	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	43	4	41	0	0	0	0	0	0
FIP1L1	81608	ucsc.edu	37	4	54319225	54319225	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	44	5	68	1	27	27	0	0	0
KIAA1211	57482	ucsc.edu	37	4	57181068	57181068	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	35	5	37	0	0	0	0	0	0
UGT2A3	79799	bcgsc.ca	37	4	69798433	69798433	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	213	12	263	1	166	166	0	0	0
UGT2B28	54490	ucsc.edu	37	4	70148239	70148239	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	66	6	90	0	0	0	0	0	0
ENAM	10117	ucsc.edu	37	4	71509745	71509745	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	62	6	91	0	11	11	0	0	0
SEPT11	55752	ucsc.edu	37	4	77941744	77941744	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	52	5	53	0	20	20	0	0	0
ARHGAP24	83478	bcgsc.ca	37	4	86916655	86916655	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	87	8	100	0	181	181	0	0	0
PTPN13	5783	ucsc.edu	37	4	87593679	87593679	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	18	4	19	0	11	11	0	0	0
PTPN13	5783	ucsc.edu	37	4	87653614	87653614	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	25	4	18	0	0	0	0	0	0
AFF1	4299	ucsc.edu	37	4	88036382	88036382	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	32	4	29	0	38	38	0	0	0
KLHL8	57563	broad.mit.edu;bcgsc.ca	37	4	88091355	88091355	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	127	9	120	0	7	6	1	0	0
FAM13A	10144	bcgsc.ca	37	4	89660228	89660228	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	142	10	147	2	47	47	0	0	0
FAM13A	10144	ucsc.edu	37	4	89726197	89726197	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	30	4	29	0	0	0	0	0	0
ELOVL6	79071	ucsc.edu	37	4	111026785	111026785	+	Splice_Site	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	35	4	42	0	0	0	0	0	0
MIR577	693162	ucsc.edu	37	4	115577918	115577918	+	RNA	SNP	G	G	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	32	4	23	0	0	0	0	0	0
NUDT6	11162	bcgsc.ca	37	4	123814148	123814148	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	107	8	135	2	23	23	0	0	0
LARP1B	55132	bcgsc.ca	37	4	129100599	129100599	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	198	13	170	1	11	11	0	0	0
PET112	5188	ucsc.edu	37	4	152682132	152682132	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	46	6	71	0	3	3	0	0	0
DCHS2	54798	ucsc.edu	37	4	155237039	155237039	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	37	4	50	0	0	0	0	0	0
DDX60	55601	bcgsc.ca	37	4	169190007	169190007	+	Silent	SNP	G	G	T	rs145361158	alternate_allele	TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	84	6	83	0	0	0	0	0	0
DDX60L	91351	bcgsc.ca	37	4	169294862	169294862	+	Silent	SNP	C	C	A	rs201273359	alternate_allele	TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	360	12	364	6	10	10	0	0	0
CLCN3	1182	bcgsc.ca	37	4	170618512	170618512	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	253	12	235	2	51	51	0	0	0
ZDHHC11	79844	bcgsc.ca	37	5	840685	840685	+	Missense_Mutation	SNP	C	C	A	rs200003984	alternate_allele	TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	576	26	605	11	1	1	0	0	0
SLC6A18	348932	bcgsc.ca	37	5	1244357	1244357	+	Silent	SNP	C	C	A	rs144703302	byfrequency;alternate_allele	TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	141	8	150	1	0	0	0	0	0
CCT5	22948	ucsc.edu	37	5	10256095	10256095	+	Silent	SNP	G	G	T	rs140826112	byfrequency;alternate_allele	TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	42	5	53	1	314	314	0	0	0
DNAH5	1767	ucsc.edu	37	5	13792144	13792144	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	41	4	59	0	1	1	0	0	0
DNAH5	1767	ucsc.edu	37	5	13850819	13850819	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	60	6	87	1	2	2	0	0	0
MYO10	4651	ucsc.edu	37	5	16794798	16794798	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	43	4	33	0	20	20	0	0	0
NIM1	0	bcgsc.ca	37	5	43280248	43280248	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	109	9	114	1	0	0	0	0	0
MAP3K1	4214	ucsc.edu	37	5	56155636	56155636	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	40	4	43	0	13	13	0	0	0
BDP1	55814	bcgsc.ca	37	5	70819777	70819777	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	106	7	97	1	0	0	0	0	0
PTCD2	79810	bcgsc.ca	37	5	71654137	71654137	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	79	7	64	0	14	14	0	0	0
JMY	133746	bcgsc.ca	37	5	78573862	78573862	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	152	9	125	0	14	14	0	0	0
MTX3	345778	bcgsc.ca	37	5	79282874	79282874	+	Missense_Mutation	SNP	C	C	A	rs186130359	by1000genomes;alternate_allele	TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	124	8	116	1	8	8	0	0	0
RASGRF2	5924	ucsc.edu	37	5	80390118	80390118	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	41	4	25	0	0	0	0	0	0
GPR98	84059	bcgsc.ca	37	5	89953849	89953849	+	Silent	SNP	C	C	A	rs17543819	byfrequency;alternate_allele	TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	154	12	171	0	0	0	0	0	0
RGMB	285704	ucsc.edu	37	5	98115658	98115658	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	40	4	39	0	0	0	0	0	0
SEMA6A	57556	bcgsc.ca	37	5	115827490	115827490	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	166	9	157	0	41	40	0	0	1
ZNF608	57507	bcgsc.ca	37	5	123982598	123982598	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	191	9	153	1	12	12	0	0	0
SLC12A2	6558	bcgsc.ca	37	5	127488408	127488408	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	157	11	150	3	0	0	0	0	0
FBN2	2201	ucsc.edu	37	5	127625607	127625607	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	46	5	38	0	0	0	0	0	0
RAPGEF6	51735	bcgsc.ca	37	5	130782196	130782196	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	209	11	205	2	12	12	0	0	0
P4HA2	8974	ucsc.edu	37	5	131554245	131554245	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	39	4	35	0	0	0	0	0	0
TCF7	6932	ucsc.edu	37	5	133479331	133479331	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	34	4	37	0	0	0	0	0	0
C5orf20	140947	bcgsc.ca	37	5	134782380	134782380	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	180	12	193	2	1	1	0	0	0
BRD8	10902	ucsc.edu	37	5	137485367	137485367	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	65	7	61	0	0	0	0	0	0
BRD8	10902	ucsc.edu	37	5	137502367	137502367	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	47	6	54	0	21	21	0	0	0
PFDN1	5201	bcgsc.ca	37	5	139682647	139682647	+	Silent	SNP	G	G	T	rs146934289		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	371	15	483	8	40	40	0	0	0
TMCO6	55374	bcgsc.ca	37	5	140024235	140024235	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	301	14	339	2	17	17	0	0	0
WDR55	54853	ucsc.edu	37	5	140048333	140048333	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	54	6	47	0	18	18	0	0	0
PCDHGB7	56099	hgsc.bcm.edu	37	5	140797670	140797670	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	135	7	147	1	35	35	0	0	0
PCDHGC4	56098	ucsc.edu	37	5	140865820	140865820	+	Silent	SNP	C	C	A	rs148995268	alternate_allele	TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	60	6	73	0	0	0	0	0	0
RELL2	285613	ucsc.edu	37	5	141018586	141018586	+	Silent	SNP	C	C	A	rs147498015	alternate_allele	TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	42	4	41	0	0	0	0	0	0
JAKMIP2	9832	bcgsc.ca	37	5	147029919	147029919	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	80	7	97	0	1	1	0	0	0
AFAP1L1	134265	ucsc.edu	37	5	148719569	148719569	+	Splice_Site	SNP	G	G	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	41	4	44	0	0	0	0	0	0
CSF1R	1436	bcgsc.ca	37	5	149435803	149435803	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	132	10	155	1	71	71	0	0	0
CAMK2A	815	ucsc.edu;bcgsc.ca	37	5	149631572	149631572	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	58	6	61	0	0	0	0	0	0
NDST1	3340	ucsc.edu	37	5	149907409	149907409	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	39	4	41	0	43	43	0	0	0
GRIA1	2890	bcgsc.ca	37	5	153065836	153065836	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	114	7	122	1	0	0	0	0	0
GEMIN5	25929	bcgsc.ca	37	5	154316729	154316729	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	165	10	169	3	2	2	0	0	0
SLU7	10569	bcgsc.ca	37	5	159833527	159833527	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	105	9	134	1	57	57	0	0	0
SH3PXD2B	285590	ucsc.edu	37	5	171781010	171781010	+	Splice_Site	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	53	5	72	0	0	0	0	0	0
NSD1	64324	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	176637880	176637880	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	49	13	61	0	0	0	0	0	0
PRELID1	27166	ucsc.edu	37	5	176731046	176731046	+	Silent	SNP	C	C	A	rs61746761	alternate_allele	TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	40	4	57	0	266	266	0	0	0
TBC1D9B	23061	ucsc.edu	37	5	179320276	179320276	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	39	4	51	0	78	77	0	0	1
MAPK9	5601	bcgsc.ca	37	5	179676023	179676023	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	318	11	417	3	22	22	0	0	0
NQO2	4835	ucsc.edu	37	6	3017149	3017149	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	36	4	48	0	102	102	0	0	0
TFAP2A	7020	bcgsc.ca	37	6	10415176	10415176	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	97	7	94	1	1	1	0	0	0
KIAA0319	9856	ucsc.edu	37	6	24563724	24563724	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	41	4	45	0	0	0	0	0	0
HIST1H4F	8361	ucsc.edu	37	6	26240819	26240819	+	Missense_Mutation	SNP	C	C	A	rs146739153	alternate_allele	TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	42	4	56	1	0	0	0	0	0
ZSCAN31	64288	bcgsc.ca	37	6	28297162	28297162	+	Missense_Mutation	SNP	C	C	A	rs192606380	alternate_allele	TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	256	11	294	5	20	20	0	0	0
SCAND3	114821	bcgsc.ca	37	6	28543671	28543671	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	205	13	188	0	0	0	0	0	0
OR10C1	442194	bcgsc.ca	37	6	29408592	29408592	+	Missense_Mutation	SNP	C	C	A	rs150247833	alternate_allele	TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	284	11	272	2	0	0	0	0	0
MDC1	9656	ucsc.edu	37	6	30671006	30671006	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	38	5	72	0	21	21	0	0	0
C6orf15	29113	ucsc.edu	37	6	31079483	31079483	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	39	4	57	0	0	0	0	0	0
MCCD1	401250	ucsc.edu	37	6	31497641	31497641	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	10	4	13	0	15	15	0	0	0
CFB	629	bcgsc.ca	37	6	31914037	31914037	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	150	11	219	2	287	287	0	0	0
PSMB8	5696	bcgsc.ca	37	6	32809450	32809450	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	244	11	259	3	545	545	0	0	0
RXRB	6257	ucsc.edu;bcgsc.ca	37	6	33163390	33163390	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	59	6	85	0	57	57	0	0	0
WDR46	9277	ucsc.edu	37	6	33248491	33248491	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	40	4	29	0	27	27	0	0	0
SYNGAP1	8831	bcgsc.ca	37	6	33411300	33411300	+	Missense_Mutation	SNP	G	G	T	rs145472959	alternate_allele	TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	276	10	311	1	14	14	0	0	0
GRM4	2914	ucsc.edu	37	6	34100765	34100765	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	31	4	53	0	0	0	0	0	0
RPS10	6204	ucsc.edu	37	6	34392605	34392605	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	40	4	50	1	1890	1890	0	0	0
PACSIN1	29993	ucsc.edu	37	6	34498058	34498058	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	44	4	51	0	0	0	0	0	0
SRPK1	6732	ucsc.edu	37	6	35806177	35806177	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	24	4	41	0	38	38	0	0	0
CPNE5	57699	bcgsc.ca	37	6	36790865	36790865	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	150	9	136	0	0	0	0	0	0
KIF6	221458	bcgsc.ca	37	6	39325087	39325087	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	150	9	172	0	1	1	0	0	0
PRICKLE4	29964	ucsc.edu	37	6	41751960	41751960	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	44	4	32	0	3	3	0	0	0
PTCRA	171558	ucsc.edu	37	6	42893400	42893400	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	27	4	34	1	0	0	0	0	0
PTK7	5754	ucsc.edu	37	6	43109713	43109713	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	35	5	49	0	10	10	0	0	0
PTK7	5754	bcgsc.ca	37	6	43111198	43111198	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	127	10	115	0	18	18	0	0	0
TTBK1	84630	bcgsc.ca	37	6	43220495	43220495	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	75	6	71	0	1	1	0	0	0
RUNX2	860	hgsc.bcm.edu;broad.mit.edu	37	6	45390466	45390466	+	Silent	SNP	A	A	G	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	48	4	46	0	7180	156	7016	2	6
PKHD1	5314	ucsc.edu	37	6	51524465	51524465	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	58	6	81	0	25	25	0	0	0
GFRAL	389400	ucsc.edu;bcgsc.ca	37	6	55264214	55264214	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	95	9	115	0	0	0	0	0	0
COL9A1	1297	ucsc.edu	37	6	70970413	70970413	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	25	4	41	0	0	0	0	0	0
MYO6	4646	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	76542650	76542650	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	140	43	107	0	0	0	0	0	0
MAP3K7	6885	bcgsc.ca	37	6	91263201	91263201	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	174	9	167	1	18	18	0	0	0
FIG4	9896	ucsc.edu;bcgsc.ca	37	6	110098159	110098159	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	70	7	86	0	37	37	0	0	0
TRAF3IP2	10758	bcgsc.ca	37	6	111913058	111913058	+	Silent	SNP	G	G	T	rs73764462	byfrequency;alternate_allele	TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	125	8	134	0	33	33	0	0	0
ROS1	6098	ucsc.edu	37	6	117686801	117686801	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	50	5	56	0	0	0	0	0	0
LAMA2	3908	bcgsc.ca	37	6	129609141	129609141	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	279	15	322	4	0	0	0	0	0
AHI1	54806	ucsc.edu	37	6	135644393	135644393	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	47	5	49	0	4	4	0	0	0
MAP3K5	4217	bcgsc.ca	37	6	136944043	136944043	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	290	12	313	2	7	7	0	0	0
UTRN	7402	ucsc.edu;bcgsc.ca	37	6	145069622	145069622	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	57	6	75	0	31	31	0	0	0
SOD2	6648	ucsc.edu	37	6	160103564	160103564	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	62	6	61	0	1293	1292	0	1	0
T	6862	ucsc.edu	37	6	166580344	166580344	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	60	6	82	0	0	0	0	0	0
TTLL2	83887	ucsc.edu	37	6	167752251	167752251	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	39	4	38	0	0	0	0	0	0
MLLT4	4301	ucsc.edu	37	6	168349013	168349013	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	60	6	83	1	63	63	0	0	0
SUN1	23353	ucsc.edu	37	7	891065	891065	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	32	4	28	0	63	63	0	0	0
SNX8	29886	ucsc.edu	37	7	2302938	2302938	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	41	4	32	0	19	19	0	0	0
SLC29A4	222962	ucsc.edu	37	7	5342552	5342552	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	35	4	17	0	0	0	0	0	0
CDK13	8621	bcgsc.ca	37	7	40102462	40102462	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	746	24	522	4	20	20	0	0	0
URGCP	55665	ucsc.edu	37	7	43918327	43918327	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	38	4	34	0	101	101	0	0	0
DDX56	54606	hgsc.bcm.edu	37	7	44613238	44613238	+	Missense_Mutation	SNP	C	C	A	rs11548034		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	132	9	99	1	76	76	0	0	0
OGDH	4967	ucsc.edu	37	7	44714852	44714852	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	41	4	48	0	287	287	0	0	0
OGDH	4967	ucsc.edu	37	7	44746839	44746839	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	74	7	61	1	277	277	0	0	0
ADCY1	107	bcgsc.ca	37	7	45717544	45717544	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	171	9	135	0	0	0	0	0	0
C7orf57	136288	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	48081007	48081007	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	100	46	88	0	0	0	0	0	0
ABCA13	154664	ucsc.edu	37	7	48431541	48431541	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	39	4	46	0	0	0	0	0	0
EGFR	1956	bcgsc.ca	37	7	55232972	55232972	+	Splice_Site	SNP	G	G	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	109	8	108	0	0	0	0	0	0
ZNF92	168374	bcgsc.ca	37	7	64864681	64864681	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	165	12	111	1	13	13	0	0	0
LIMK1	3984	bcgsc.ca	37	7	73535328	73535328	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	233	12	216	2	61	61	0	0	0
PCLO	27445	bcgsc.ca	37	7	82584365	82584365	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	249	10	184	1	3	3	0	0	0
ZKSCAN5	23660	bcgsc.ca	37	7	99128903	99128903	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	170	9	138	1	9	9	0	0	0
GJC3	349149	bcgsc.ca	37	7	99526694	99526694	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	212	10	151	2	0	0	0	0	0
LRCH4	4034	ucsc.edu	37	7	100173598	100173598	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	40	4	23	0	51	51	0	0	0
COL26A1	136227	ucsc.edu;bcgsc.ca	37	7	101063284	101063284	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	44	6	43	0	1	1	0	0	0
LRWD1	222229	ucsc.edu	37	7	102108796	102108796	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	31	4	21	0	56	56	0	0	0
ORC5	5001	bcgsc.ca	37	7	103808892	103808892	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	176	8	146	2	1	1	0	0	0
PPP1R3A	5506	bcgsc.ca	37	7	113519998	113519998	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	249	11	193	3	0	0	0	0	0
ST7	7982	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	116863027	116863027	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	84	42	66	0	67	17	50	0	0
FLNC	2318	ucsc.edu	37	7	128494133	128494133	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	46	5	44	0	85	85	0	0	0
FLNC	2318	ucsc.edu	37	7	128494226	128494226	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	37	4	45	0	38	38	0	0	0
ZC3HC1	51530	bcgsc.ca	37	7	129658553	129658553	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	158	11	126	0	47	47	0	0	0
KLHDC10	23008	bcgsc.ca	37	7	129770530	129770530	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	174	11	140	2	44	44	0	0	0
PARP12	64761	bcgsc.ca	37	7	139756920	139756920	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	241	12	198	1	29	29	0	0	0
MGAM	8972	bcgsc.ca	37	7	141755509	141755509	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	104	9	103	1	0	0	0	0	0
MGAM	8972	ucsc.edu	37	7	141759706	141759706	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	43	6	33	0	0	0	0	0	0
ZNF786	136051	ucsc.edu	37	7	148768225	148768225	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	36	4	41	0	7	7	0	0	0
ZNF746	155061	ucsc.edu	37	7	149171568	149171568	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	23	4	20	0	10	10	0	0	0
ZNF746	155061	bcgsc.ca	37	7	149174049	149174049	+	Missense_Mutation	SNP	C	C	A	rs202035156	alternate_allele	TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	166	8	139	1	18	18	0	0	0
ASIC3	9311	bcgsc.ca	37	7	150747242	150747242	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	99	9	80	1	1	1	0	0	0
PTPRN2	5799	bcgsc.ca	37	7	157985146	157985146	+	Missense_Mutation	SNP	C	C	A	rs140017402	alternate_allele	TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	209	11	114	1	0	0	0	0	0
ANGPT2	285	bcgsc.ca	37	8	6372269	6372269	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	408	14	480	2	1	1	0	0	0
TNKS	8658	bcgsc.ca	37	8	9437750	9437750	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	210	11	214	0	14	14	0	0	0
LPL	4023	bcgsc.ca	37	8	19818544	19818544	+	Silent	SNP	C	C	A	rs200852756	alternate_allele	TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	68	6	87	1	7	7	0	0	0
SLC18A1	6570	ucsc.edu	37	8	20007239	20007239	+	Splice_Site	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	39	4	42	0	0	0	0	0	0
DOK2	9046	ucsc.edu	37	8	21768278	21768278	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	42	4	47	0	5	5	0	0	0
FAM160B2	64760	bcgsc.ca	37	8	21958382	21958382	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	146	8	158	1	42	42	0	0	0
SLC39A14	23516	bcgsc.ca	37	8	22262246	22262246	+	Missense_Mutation	SNP	C	C	A	rs34328787	byfrequency;alternate_allele	TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	176	9	199	1	21	21	0	0	0
RHOBTB2	23221	bcgsc.ca	37	8	22868085	22868085	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	149	8	168	1	14	14	0	0	0
KCTD9	54793	ucsc.edu;bcgsc.ca	37	8	25296853	25296853	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	56	6	62	0	27	27	0	0	0
CDCA2	157313	bcgsc.ca	37	8	25365086	25365086	+	Silent	SNP	C	C	A	rs145926305	byfrequency;alternate_allele	TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	390	13	386	1	0	0	0	0	0
KIF13B	23303	bcgsc.ca	37	8	28966965	28966965	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	224	13	281	1	1	1	0	0	0
WRN	7486	bcgsc.ca	37	8	30999036	30999036	+	Missense_Mutation	SNP	C	C	A	rs190364546	by1000genomes;alternate_allele	TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	104	8	99	0	6	6	0	0	0
RNF122	79845	bcgsc.ca	37	8	33408899	33408899	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	116	7	163	2	0	0	0	0	0
DUSP26	78986	ucsc.edu;bcgsc.ca	37	8	33451245	33451245	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	56	6	54	0	0	0	0	0	0
ASH2L	9070	ucsc.edu	37	8	37993284	37993284	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	53	5	44	0	1	1	0	0	0
ANK1	286	bcgsc.ca	37	8	41572556	41572556	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	125	7	96	0	0	0	0	0	0
HGSNAT	138050	ucsc.edu	37	8	43025836	43025836	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	23	4	26	0	0	0	0	0	0
PRKDC	5591	bcgsc.ca	37	8	48771540	48771540	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	215	10	236	1	0	0	0	0	0
RGS20	8601	bcgsc.ca	37	8	54764475	54764475	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	163	10	195	2	0	0	0	0	0
COPS5	10987	bcgsc.ca	37	8	67971611	67971611	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	155	8	159	0	70	70	0	0	0
PREX2	80243	bcgsc.ca	37	8	68995493	68995493	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	78	7	106	1	0	0	0	0	0
NCOA2	10499	ucsc.edu	37	8	71033589	71033589	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	38	4	35	0	23	23	0	0	0
NCOA2	10499	ucsc.edu	37	8	71069322	71069322	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	33	4	46	0	16	16	0	0	0
JPH1	56704	ucsc.edu	37	8	75227845	75227845	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	33	4	49	0	0	0	0	0	0
JPH1	56704	ucsc.edu	37	8	75233216	75233216	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	38	4	55	1	0	0	0	0	0
PTDSS1	9791	ucsc.edu	37	8	97274304	97274304	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	38	4	45	0	32	32	0	0	0
POP1	10940	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	99161148	99161148	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	47	16	52	0	6	4	2	0	0
KLF10	7071	ucsc.edu	37	8	103663622	103663622	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	60	6	73	0	28	28	0	0	0
CSMD3	114788	bcgsc.ca	37	8	114448922	114448922	+	Silent	SNP	C	C	A	rs141568192	alternate_allele	TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	282	12	294	1	0	0	0	0	0
TOP1MT	116447	bcgsc.ca	37	8	144403462	144403462	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	69	7	59	0	4	4	0	0	0
TSTA3	7264	bcgsc.ca	37	8	144698868	144698868	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	118	8	145	0	69	69	0	0	0
SCRIB	23513	ucsc.edu	37	8	144877243	144877243	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	39	6	43	0	43	43	0	0	0
NRBP2	340371	ucsc.edu	37	8	144919431	144919431	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	37	4	47	0	0	0	0	0	0
PLEC	5339	ucsc.edu	37	8	144990824	144990824	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	41	4	58	1	85	85	0	0	0
CYC1	1537	bcgsc.ca	37	8	145150769	145150769	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	110	8	107	1	159	159	0	0	0
ZNF250	58500	ucsc.edu	37	8	146106923	146106923	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	30	4	34	0	10	10	0	0	0
ZNF250	58500	ucsc.edu	37	8	146115336	146115336	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	24	4	32	0	5	5	0	0	0
KANK1	23189	ucsc.edu	37	9	730103	730103	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	40	5	55	0	36	36	0	0	0
DMRT1	1761	ucsc.edu;bcgsc.ca	37	9	916774	916774	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	60	7	94	0	0	0	0	0	0
CNTLN	54875	bcgsc.ca	37	9	17415871	17415871	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	112	8	124	0	0	0	0	0	0
LRRC19	64922	ucsc.edu	37	9	26999702	26999702	+	Splice_Site	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	41	4	46	0	0	0	0	0	0
TAF1L	138474	bcgsc.ca	37	9	32634482	32634482	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	200	11	189	1	5	5	0	0	0
BAG1	573	bcgsc.ca	37	9	33261107	33261107	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	130	8	99	0	255	255	0	0	0
PRSS3	5646	bcgsc.ca	37	9	33798556	33798556	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	232	11	276	1	0	0	0	0	0
C9orf131	138724	bcgsc.ca	37	9	35045131	35045131	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	621	23	644	12	0	0	0	0	0
ARHGEF39	84904	ucsc.edu	37	9	35664814	35664814	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	51	5	70	0	2	2	0	0	0
SPAG8	26206	bcgsc.ca	37	9	35811258	35811258	+	Missense_Mutation	SNP	G	G	T	rs146436726	alternate_allele	TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	217	12	227	2	0	0	0	0	0
FRMPD1	22844	ucsc.edu	37	9	37740612	37740612	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	52	5	54	0	0	0	0	0	0
ALDH1B1	219	bcgsc.ca	37	9	38396047	38396047	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	111	7	189	1	155	155	0	0	0
TRPM3	80036	ucsc.edu	37	9	73736255	73736255	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	42	4	48	0	0	0	0	0	0
RORB	6096	bcgsc.ca	37	9	77257710	77257710	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	106	8	149	1	2	2	0	0	0
AGTPBP1	23287	ucsc.edu	37	9	88275888	88275888	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	38	5	37	0	0	0	0	0	0
ASPN	54829	hgsc.bcm.edu	37	9	95237030	95237030	+	Missense_Mutation	SNP	A	A	C	rs143279922		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	34	5	26	0	0	0	0	0	0
C9orf3	84909	ucsc.edu	37	9	97741705	97741705	+	Missense_Mutation	SNP	C	C	A	rs200397586		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	38	4	51	0	0	0	0	0	0
SLC35D2	11046	bcgsc.ca	37	9	99106226	99106226	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	334	14	276	3	25	25	0	0	0
GABBR2	9568	ucsc.edu	37	9	101235526	101235526	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	44	4	63	0	1	1	0	0	0
SVEP1	79987	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	113163288	113163288	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	102	33	110	1	0	0	0	0	0
FKBP15	23307	ucsc.edu	37	9	115932022	115932022	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	16	4	28	0	37	37	0	0	0
TRAF1	7185	ucsc.edu	37	9	123673636	123673636	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	42	4	52	0	9	9	0	0	0
OR1J1	347168	bcgsc.ca	37	9	125239420	125239420	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	154	10	140	1	0	0	0	0	0
PBX3	5090	ucsc.edu	37	9	128697825	128697825	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	52	6	65	1	10	10	0	0	0
LRSAM1	90678	ucsc.edu	37	9	130230038	130230038	+	Nonsense_Mutation	SNP	C	C	A	rs75690855	byfrequency;alternate_allele	TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	35	4	38	0	29	29	0	0	0
FAM129B	64855	ucsc.edu	37	9	130279440	130279440	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	38	4	37	0	266	266	0	0	0
CERCAM	51148	bcgsc.ca	37	9	131193497	131193497	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	130	14	125	1	7	7	0	0	0
PKN3	29941	ucsc.edu	37	9	131469004	131469004	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	22	4	27	0	0	0	0	0	0
PRRC2B	84726	ucsc.edu	37	9	134319610	134319610	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	35	4	52	0	54	54	0	0	0
SDCCAG3	10807	ucsc.edu	37	9	139301622	139301622	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	30	4	38	0	29	29	0	0	0
SEC16A	9919	ucsc.edu	37	9	139354251	139354251	+	Missense_Mutation	SNP	C	C	A	rs202232995	alternate_allele	TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	31	4	33	0	41	41	0	0	0
NOTCH1	4851	ucsc.edu	37	9	139407969	139407969	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	32	4	23	0	11	11	0	0	0
LCN10	414332	ucsc.edu	37	9	139636465	139636465	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	33	4	43	0	0	0	0	0	0
LCN8	138307	ucsc.edu	37	9	139652379	139652379	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	49	5	35	0	0	0	0	0	0
PTGDS	5730	ucsc.edu	37	9	139874729	139874729	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	38	4	38	0	0	0	0	0	0
PTGDS	5730	ucsc.edu	37	9	139874735	139874735	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	33	4	37	0	0	0	0	0	0
FAM166A	401565	ucsc.edu	37	9	140140245	140140245	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	45	5	51	0	0	0	0	0	0
CACNA1B	774	ucsc.edu	37	9	140970328	140970328	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	26	4	28	0	0	0	0	0	0
PLCXD1	55344	bcgsc.ca	37	X	200942	200942	+	Silent	SNP	C	C	A	rs137999220	alternate_allele	TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	87	8	131	0	4	4	0	0	0
ASMTL	8623	ucsc.edu	37	X	1561211	1561211	+	Splice_Site	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	57	6	92	1	0	0	0	0	0
ASMT	438	bcgsc.ca	37	X	1746635	1746635	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	806	25	890	9	0	0	0	0	0
BEND2	139105	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	18195783	18195783	+	Silent	SNP	A	A	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	291	207	265	0	0	0	0	0	0
SUPT20HL2	170067	ucsc.edu	37	X	24329362	24329362	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	31	4	47	0	0	0	0	0	0
POLA1	5422	ucsc.edu;bcgsc.ca	37	X	24750541	24750541	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	47	7	51	0	2	2	0	0	0
MAGEB6	158809	ucsc.edu	37	X	26212077	26212077	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	44	5	48	0	0	0	0	0	0
TAB3	257397	ucsc.edu	37	X	30852186	30852186	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	49	6	50	0	21	21	0	0	0
DMD	1756	ucsc.edu	37	X	32862919	32862919	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	41	4	40	0	0	0	0	0	0
FAM47A	158724	ucsc.edu	37	X	34149053	34149053	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	42	4	49	0	0	0	0	0	0
CHDC2	286464	ucsc.edu	37	X	36089986	36089986	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	26	4	35	0	0	0	0	0	0
CYBB	1536	ucsc.edu	37	X	37664329	37664329	+	Nonsense_Mutation	SNP	G	G	T	rs151344473	alternate_allele	TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	34	4	32	0	30	30	0	0	0
KDM6A	7403	broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	44733231	44733231	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	12	8	25	0	0	0	0	0	0
UBA1	7317	ucsc.edu	37	X	47060734	47060734	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	27	4	18	0	138	138	0	0	0
ZNF182	7569	ucsc.edu	37	X	47836079	47836079	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	43	4	66	0	2	2	0	0	0
ZNF630	57232	ucsc.edu	37	X	47918061	47918061	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	23	4	23	0	1	1	0	0	0
SMC1A	8243	ucsc.edu	37	X	53421809	53421809	+	Splice_Site	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	40	4	34	0	0	0	0	0	0
FAM120C	54954	ucsc.edu	37	X	54107888	54107888	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	29	4	32	0	0	0	0	0	0
WNK3	65267	ucsc.edu	37	X	54265411	54265411	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	41	6	51	0	0	0	0	0	0
ITIH6	347365	ucsc.edu	37	X	54823447	54823447	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	38	4	40	0	0	0	0	0	0
PAGE2	203569	ucsc.edu	37	X	55116992	55116992	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	39	4	45	0	0	0	0	0	0
MTMR8	55613	ucsc.edu	37	X	63488803	63488803	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	38	4	39	0	0	0	0	0	0
MTMR8	55613	ucsc.edu;bcgsc.ca	37	X	63569900	63569900	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	85	10	108	0	0	0	0	0	0
MTMR8	55613	ucsc.edu	37	X	63576180	63576180	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	31	4	36	0	0	0	0	0	0
DLG3	1741	ucsc.edu	37	X	69670488	69670488	+	Splice_Site	SNP	G	G	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	22	4	23	0	0	0	0	0	0
CXorf65	158830	ucsc.edu	37	X	70323875	70323875	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	38	4	39	0	0	0	0	0	0
TAF1	6872	ucsc.edu	37	X	70608099	70608099	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	50	7	52	0	10	10	0	0	0
HDAC8	55869	ucsc.edu	37	X	71708796	71708796	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	62	6	60	1	0	0	0	0	0
PHKA1	5255	ucsc.edu	37	X	71840658	71840658	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	32	4	44	0	24	24	0	0	0
HMGN5	79366	ucsc.edu	37	X	80375289	80375289	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	33	4	27	0	0	0	0	0	0
KLHL4	56062	ucsc.edu	37	X	86887409	86887409	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	45	5	35	1	3	3	0	0	0
KLHL4	56062	ucsc.edu	37	X	86890595	86890595	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	36	4	33	0	4	4	0	0	0
NAP1L3	4675	ucsc.edu	37	X	92928280	92928280	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	38	4	34	0	9	9	0	0	0
TSPAN6	7105	ucsc.edu	37	X	99887551	99887551	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	19	4	11	0	1	1	0	0	0
SYTL4	94121	bcgsc.ca	37	X	99955946	99955946	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	178	10	145	0	6	6	0	0	0
TCEAL2	140597	ucsc.edu	37	X	101381876	101381876	+	Missense_Mutation	SNP	C	C	A	rs181755164	alternate_allele	TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	36	4	41	0	1	1	0	0	0
BEX2	84707	ucsc.edu	37	X	102564902	102564902	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	37	4	44	0	1	1	0	0	0
RAB9B	51209	ucsc.edu	37	X	103080544	103080544	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	52	5	58	0	1	1	0	0	0
CXorf57	55086	bcgsc.ca	37	X	105883951	105883951	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	72	7	45	0	0	0	0	0	0
KLHL13	90293	bcgsc.ca	37	X	117033240	117033240	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	250	14	258	2	7	7	0	0	0
LONRF3	79836	ucsc.edu	37	X	118151639	118151639	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	46	6	59	0	12	12	0	0	0
GPC3	2719	bcgsc.ca	37	X	132834038	132834038	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	111	9	118	2	3	3	0	0	0
FMR1	2332	ucsc.edu	37	X	147030261	147030261	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	42	4	60	0	51	51	0	0	0
PNMA3	29944	ucsc.edu	37	X	152226589	152226589	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	31	4	51	1	4	4	0	0	0
FLNA	2316	ucsc.edu	37	X	153586596	153586596	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	28	4	24	0	73	73	0	0	0
LRBA	987	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	151271258	151271259	+	Frame_Shift_Ins	INS	-	-	AT	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	70	12	81	0	0	0	0	0	0
ZNF559	84527	bcgsc.ca	37	19	9453288	9453289	+	Missense_Mutation	DNP	AA	AA	GG	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	AA	AA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	72	20	67	0	0	0	0	0	0
