Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	TTotCov	TVarCov	NTotCov	NVarCov	Trna_tot	Trna_ref	Trna_var	Trna_alt1	Trna_alt2
CCNL2	81669	ucsc.edu	37	1	1330806	1330806	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	37	4	57	0	30	30	0	0	0
CHD5	26038	ucsc.edu	37	1	6206743	6206743	+	Silent	SNP	G	G	T	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	46	5	62	0	0	0	0	0	0
KIF1B	23095	ucsc.edu	37	1	10338172	10338172	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	36	5	59	0	0	0	0	0	0
PTCHD2	57540	bcgsc.ca	37	1	11579475	11579475	+	Silent	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	252	12	357	0	0	0	0	0	0
MFN2	9927	bcgsc.ca	37	1	12058935	12058935	+	Silent	SNP	G	G	T	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	112	8	183	0	0	0	0	0	0
VPS13D	55187	bcgsc.ca	37	1	12317087	12317087	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	109	7	128	1	7	7	0	0	0
PRDM2	7799	bcgsc.ca	37	1	14107969	14107969	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	123	8	156	0	6	6	0	0	0
DDI2	84301	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	15956850	15956850	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	112	24	131	0	6	5	1	0	0
DDI2	84301	ucsc.edu	37	1	15978293	15978293	+	Silent	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	37	4	67	0	6	6	0	0	0
FBXO42	54455	ucsc.edu	37	1	16578095	16578095	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	43	5	48	0	30	30	0	0	0
PADI4	23569	ucsc.edu	37	1	17674467	17674467	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	41	5	65	0	0	0	0	0	0
UBR4	23352	ucsc.edu	37	1	19500942	19500942	+	Splice_Site	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	34	4	48	0	0	0	0	0	0
OTUD3	23252	ucsc.edu	37	1	20233043	20233043	+	Silent	SNP	C	C	A	rs201617692		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	38	4	46	0	0	0	0	0	0
PLA2G2C	391013	ucsc.edu	37	1	20490553	20490553	+	Silent	SNP	G	G	T	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	39	4	50	0	1	1	0	0	0
ECE1	1889	bcgsc.ca	37	1	21582497	21582497	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	122	8	126	0	40	40	0	0	0
GRHL3	57822	ucsc.edu	37	1	24663603	24663603	+	Silent	SNP	G	G	T	rs141756434	byfrequency;alternate_allele	TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	48	5	46	0	1	1	0	0	0
ZNF683	257101	ucsc.edu	37	1	26694143	26694143	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	34	4	42	1	0	0	0	0	0
WDTC1	23038	ucsc.edu	37	1	27614204	27614204	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	35	4	40	0	40	40	0	0	0
PEF1	553115	ucsc.edu	37	1	32101008	32101008	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	23	4	35	0	37	36	0	0	1
PEF1	553115	ucsc.edu	37	1	32101039	32101039	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	23	4	37	0	31	31	0	0	0
CSMD2	114784	ucsc.edu	37	1	34052688	34052688	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	27	4	16	0	0	0	0	0	0
THRAP3	9967	bcgsc.ca	37	1	36762298	36762298	+	Silent	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	109	7	123	0	75	75	0	0	0
STK40	83931	ucsc.edu	37	1	36809542	36809542	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	53	6	78	1	24	24	0	0	0
MTF1	4520	ucsc.edu	37	1	38289485	38289485	+	Splice_Site	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	38	4	56	1	0	0	0	0	0
MACF1	23499	ucsc.edu	37	1	39768750	39768750	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	44	4	46	0	0	0	0	0	0
LEPRE1	64175	ucsc.edu	37	1	43216004	43216004	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	39	5	45	0	0	0	0	0	0
SZT2	23334	ucsc.edu	37	1	43908730	43908730	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	43	4	51	0	7	7	0	0	0
PTPRF	5792	ucsc.edu	37	1	44019470	44019470	+	Splice_Site	SNP	G	G	T	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	33	4	72	0	0	0	0	0	0
ST3GAL3	6487	hgsc.bcm.edu;bcgsc.ca	37	1	44290408	44290408	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	141	8	179	0	0	0	0	0	0
RPS8	6202	ucsc.edu	37	1	45242401	45242401	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	41	4	56	0	1682	1681	0	1	0
HECTD3	79654	bcgsc.ca	37	1	45474319	45474319	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	143	8	203	0	28	28	0	0	0
ZSWIM5	57643	bcgsc.ca	37	1	45486398	45486398	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	328	14	402	2	3	3	0	0	0
TESK2	10420	ucsc.edu	37	1	45810998	45810998	+	Silent	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	54	5	89	0	1	1	0	0	0
MMACHC	25974	ucsc.edu	37	1	45974495	45974495	+	Silent	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	33	4	41	0	4	4	0	0	0
LRRC41	10489	ucsc.edu	37	1	46746845	46746845	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	52	5	84	1	66	66	0	0	0
DMBX1	127343	bcgsc.ca	37	1	46977796	46977796	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	143	8	252	1	0	0	0	0	0
CYP4Z1	199974	bcgsc.ca	37	1	47571865	47571865	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	143	11	130	0	0	0	0	0	0
SLC5A9	200010	bcgsc.ca	37	1	48701511	48701511	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	90	9	124	0	1	1	0	0	0
SPATA6	54558	ucsc.edu	37	1	48877259	48877259	+	Silent	SNP	C	C	A	rs144588885		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	38	4	51	0	0	0	0	0	0
BEND5	79656	ucsc.edu	37	1	49224813	49224813	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	50	6	80	0	5	5	0	0	0
ORC1	4998	ucsc.edu	37	1	52859470	52859470	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	40	4	42	0	0	0	0	0	0
ORC1	4998	bcgsc.ca	37	1	52867069	52867069	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	136	9	196	1	0	0	0	0	0
SCP2	6342	ucsc.edu	37	1	53407504	53407504	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	40	4	47	0	77	77	0	0	0
SLC1A7	6512	ucsc.edu	37	1	53608094	53608094	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	22	4	31	0	0	0	0	0	0
DOCK7	85440	bcgsc.ca	37	1	63084456	63084456	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	178	10	204	1	12	12	0	0	0
PGM1	5236	bcgsc.ca	37	1	64095099	64095099	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	136	9	165	1	0	0	0	0	0
CACHD1	57685	bcgsc.ca	37	1	65139111	65139111	+	Silent	SNP	G	G	T	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	111	8	119	0	1	1	0	0	0
JAK1	3716	ucsc.edu	37	1	65301899	65301899	+	Splice_Site	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	51	5	47	0	2	2	0	0	0
SLC44A5	204962	ucsc.edu	37	1	75684946	75684946	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	53	6	48	0	0	0	0	0	0
USP33	23032	ucsc.edu	37	1	78189057	78189057	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	38	4	35	0	29	29	0	0	0
CYR61	3491	ucsc.edu	37	1	86048580	86048580	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	41	4	68	0	81	80	1	0	0
SYPL2	284612	ucsc.edu	37	1	110019448	110019448	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	38	5	49	0	16	16	0	0	0
SYPL2	284612	ucsc.edu;bcgsc.ca	37	1	110019592	110019592	+	Missense_Mutation	SNP	C	C	A	rs200904754	alternate_allele	TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	71	7	78	0	0	0	0	0	0
CYB561D1	284613	bcgsc.ca	37	1	110038540	110038540	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	101	7	156	0	7	7	0	0	0
BCL2L15	440603	ucsc.edu	37	1	114424423	114424423	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	35	4	47	0	2	2	0	0	0
HIPK1	204851	bcgsc.ca	37	1	114511119	114511119	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	171	11	217	0	33	33	0	0	0
SYT6	148281	bcgsc.ca	37	1	114641767	114641767	+	Missense_Mutation	SNP	G	G	T	rs200649940	alternate_allele	TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	158	8	190	0	0	0	0	0	0
SYCP1	6847	ucsc.edu	37	1	115430313	115430313	+	Silent	SNP	G	G	T	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	26	4	49	0	0	0	0	0	0
WARS2	10352	bcgsc.ca	37	1	119619162	119619162	+	Silent	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	212	10	237	0	34	34	0	0	0
POLR3C	10623	ucsc.edu	37	1	145598261	145598261	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	36	4	48	0	16	16	0	0	0
SETDB1	9869	bcgsc.ca	37	1	150923333	150923333	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	123	9	127	0	20	20	0	0	0
DENND4B	9909	ucsc.edu	37	1	153914750	153914750	+	Silent	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	42	4	57	0	9	9	0	0	0
NUP210L	91181	bcgsc.ca	37	1	154067513	154067513	+	Silent	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	64	6	61	0	0	0	0	0	0
UBAP2L	9898	ucsc.edu	37	1	154226519	154226519	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	62	6	77	0	43	43	0	0	0
PBXIP1	57326	ucsc.edu	37	1	154920726	154920726	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	21	4	30	0	77	77	0	0	0
ZBTB7B	51043	ucsc.edu;bcgsc.ca	37	1	154988019	154988019	+	Missense_Mutation	SNP	G	G	T	rs144925298	byfrequency;alternate_allele	TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	61	8	68	0	23	23	0	0	0
ZBTB7B	51043	ucsc.edu	37	1	154988131	154988131	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	40	4	71	0	35	35	0	0	0
UBQLN4	56893	ucsc.edu	37	1	156020945	156020945	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	29	4	54	0	19	19	0	0	0
SMG5	23381	ucsc.edu	37	1	156230358	156230358	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	49	5	67	0	41	41	0	0	0
IQGAP3	128239	ucsc.edu	37	1	156504354	156504354	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	51	5	86	0	0	0	0	0	0
ARHGEF11	9826	bcgsc.ca	37	1	156911752	156911752	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	69	6	99	0	23	23	0	0	0
SUMO1P3	474338	bcgsc.ca	37	1	160287524	160287524	+	RNA	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	80	7	145	0	0	0	0	0	0
NCSTN	23385	hgsc.bcm.edu;bcgsc.ca	37	1	160326497	160326497	+	Silent	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	121	7	156	1	147	147	0	0	0
PVRL4	81607	bcgsc.ca	37	1	161043548	161043548	+	Silent	SNP	G	G	T	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	85	7	121	0	0	0	0	0	0
USP21	27005	ucsc.edu	37	1	161130674	161130674	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	44	4	103	0	13	13	0	0	0
TOMM40L	84134	ucsc.edu	37	1	161197115	161197115	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	42	4	60	0	25	25	0	0	0
GPR161	23432	ucsc.edu	37	1	168073733	168073733	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	33	4	65	0	0	0	0	0	0
PRRC2C	23215	ucsc.edu	37	1	171509729	171509729	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	48	5	77	0	23	23	0	0	0
ZBTB37	84614	ucsc.edu	37	1	173842669	173842669	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	38	5	60	0	1	1	0	0	0
ASTN1	460	ucsc.edu	37	1	176863699	176863699	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	59	6	91	0	0	0	0	0	0
FAM5C	339479	ucsc.edu	37	1	190423983	190423983	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	34	4	47	0	0	0	0	0	0
UCHL5	51377	bcgsc.ca	37	1	192992161	192992161	+	Silent	SNP	G	G	T	rs139984685	byfrequency;alternate_allele	TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	135	10	129	0	0	0	0	0	0
CACNA1S	779	ucsc.edu;bcgsc.ca	37	1	201039532	201039532	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	99	10	134	0	0	0	0	0	0
ATP2B4	493	ucsc.edu	37	1	203680111	203680111	+	Silent	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	57	6	86	0	26	26	0	0	0
MDM4	4194	ucsc.edu	37	1	204515936	204515936	+	Silent	SNP	G	G	T	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	51	5	39	0	0	0	0	0	0
LRRN2	10446	ucsc.edu	37	1	204587526	204587526	+	Missense_Mutation	SNP	C	C	A	rs141369408	byfrequency;alternate_allele	TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	50	5	79	0	0	0	0	0	0
SLC41A1	254428	ucsc.edu;bcgsc.ca	37	1	205779362	205779362	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	76	8	109	1	14	14	0	0	0
SLC26A9	115019	bcgsc.ca	37	1	205904850	205904850	+	Silent	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	148	11	213	2	0	0	0	0	0
PLXNA2	5362	ucsc.edu	37	1	208390164	208390164	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	42	4	68	0	5	5	0	0	0
PTPN14	5784	bcgsc.ca	37	1	214551321	214551321	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	112	10	103	1	21	21	0	0	0
ESRRG	2104	ucsc.edu;bcgsc.ca	37	1	216692679	216692679	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	44	8	72	0	0	0	0	0	0
GPATCH2	55105	bcgsc.ca	37	1	217622646	217622646	+	Silent	SNP	C	C	A	rs34341444	alternate_allele	TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	121	8	124	0	1	1	0	0	0
PYCR2	29920	ucsc.edu	37	1	226108962	226108962	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	30	4	63	1	71	71	0	0	0
ABCB10	23456	ucsc.edu	37	1	229678001	229678001	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	44	5	45	0	8	8	0	0	0
DISC1	27185	ucsc.edu	37	1	231829919	231829919	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	32	4	48	0	6	6	0	0	0
IRF2BP2	359948	ucsc.edu	37	1	234743438	234743438	+	Silent	SNP	G	G	T	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	44	5	65	0	275	275	0	0	0
LYST	1130	bcgsc.ca	37	1	235840464	235840464	+	Silent	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	152	9	152	0	3	3	0	0	0
AHCTF1	25909	ucsc.edu	37	1	247051804	247051804	+	Silent	SNP	G	G	T	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	35	4	69	0	16	16	0	0	0
ZNF496	84838	ucsc.edu;bcgsc.ca	37	1	247486493	247486493	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	64	6	100	0	11	11	0	0	0
DIP2C	22982	bcgsc.ca	37	10	394703	394703	+	Splice_Site	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	148	9	192	0	0	0	0	0	0
LARP4B	23185	ucsc.edu	37	10	910099	910099	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	42	4	58	1	19	19	0	0	0
FBXO18	84893	bcgsc.ca	37	10	5960383	5960383	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	125	8	194	0	29	29	0	0	0
FBXO18	84893	ucsc.edu	37	10	5979133	5979133	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	35	4	58	0	37	37	0	0	0
PRPF18	8559	ucsc.edu	37	10	13655839	13655839	+	Silent	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	46	5	76	0	29	29	0	0	0
ZNF37A	7587	ucsc.edu;bcgsc.ca	37	10	38385558	38385558	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	105	10	130	0	0	0	0	0	0
RET	5979	ucsc.edu	37	10	43615168	43615168	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	48	5	83	1	0	0	0	0	0
FRMPD2	143162	ucsc.edu	37	10	49457100	49457100	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	42	4	74	0	0	0	0	0	0
TET1	80312	bcgsc.ca	37	10	70451287	70451287	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	100	7	160	0	1	1	0	0	0
CCAR1	55749	ucsc.edu	37	10	70516151	70516151	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	35	4	59	0	15	15	0	0	0
CDH23	64072	ucsc.edu	37	10	73377119	73377119	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	48	5	47	0	1	1	0	0	0
C10orf54	64115	ucsc.edu	37	10	73511566	73511566	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	34	4	61	0	96	96	0	0	0
ADK	132	ucsc.edu	37	10	76430024	76430024	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	31	4	42	0	0	0	0	0	0
DLG5	9231	bcgsc.ca	37	10	79569482	79569482	+	Silent	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	169	8	229	0	0	0	0	0	0
LDB3	11155	bcgsc.ca	37	10	88451695	88451695	+	Silent	SNP	C	C	A	rs144509718	byfrequency;alternate_allele	TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	118	8	151	0	0	0	0	0	0
MINPP1	9562	ucsc.edu	37	10	89264846	89264846	+	Silent	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	37	4	67	0	8	8	0	0	0
LIPK	643414	bcgsc.ca	37	10	90499788	90499788	+	Silent	SNP	G	G	T	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	105	8	112	0	0	0	0	0	0
SLC16A12	387700	bcgsc.ca	37	10	91203549	91203549	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	60	4	56	0	22	22	0	0	0
KIF20B	9585	ucsc.edu;bcgsc.ca	37	10	91474909	91474909	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	61	7	77	0	1	1	0	0	0
MYOF	26509	bcgsc.ca	37	10	95115408	95115408	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	185	10	252	0	80	80	0	0	0
SLIT1	6585	ucsc.edu	37	10	98790557	98790557	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	57	6	136	0	0	0	0	0	0
ARHGAP19	84986	bcgsc.ca	37	10	98995038	98995038	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	186	8	204	0	8	8	0	0	0
ENTPD7	57089	ucsc.edu	37	10	101451265	101451265	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	39	4	55	0	0	0	0	0	0
WNT8B	7479	bcgsc.ca	37	10	102240865	102240865	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	84	7	112	0	0	0	0	0	0
NDUFB8	4714	ucsc.edu	37	10	102286732	102286732	+	Silent	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	42	5	54	0	0	0	0	0	0
AS3MT	57412	ucsc.edu	37	10	104629917	104629917	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	53	5	93	1	6	6	0	0	0
ACSL5	51703	bcgsc.ca	37	10	114154815	114154815	+	Silent	SNP	C	C	A	rs11195943	byfrequency;alternate_allele	TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	83	7	129	0	20	20	0	0	0
ACSL5	51703	bcgsc.ca	37	10	114182198	114182198	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	75	7	102	0	0	0	0	0	0
VWA2	340706	bcgsc.ca	37	10	116014801	116014801	+	Silent	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	176	10	208	1	0	0	0	0	0
GRK5	2869	ucsc.edu	37	10	121212295	121212295	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	34	4	30	0	6	6	0	0	0
ADAM12	8038	ucsc.edu	37	10	127731623	127731623	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	28	5	54	0	0	0	0	0	0
BNIP3	664	ucsc.edu	37	10	133784143	133784143	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	26	4	28	0	2	2	0	0	0
BNIP3	664	ucsc.edu	37	10	133784252	133784252	+	Silent	SNP	G	G	T	rs10223		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	44	4	69	0	172	172	0	0	0
KNDC1	85442	ucsc.edu	37	10	135000054	135000054	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	45	5	85	1	0	0	0	0	0
MTG1	92170	bcgsc.ca	37	10	135233571	135233571	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	96	7	139	0	33	33	0	0	0
ATHL1	80162	ucsc.edu	37	11	290761	290761	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	47	5	74	0	45	45	0	0	0
MUC6	4588	ucsc.edu;bcgsc.ca	37	11	1020138	1020138	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	48	7	70	0	0	0	0	0	0
TRIM68	55128	ucsc.edu	37	11	4623627	4623627	+	Silent	SNP	G	G	T	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	28	5	50	0	8	8	0	0	0
OR51A7	119687	broad.mit.edu;bcgsc.ca	37	11	4928976	4928976	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	112	15	138	0	0	0	0	0	0
TRIM5	85363	bcgsc.ca	37	11	5699597	5699597	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	171	9	229	0	20	20	0	0	0
HPX	3263	bcgsc.ca	37	11	6452991	6452991	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	121	9	171	0	0	0	0	0	0
DCHS1	8642	ucsc.edu	37	11	6652970	6652970	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	27	4	40	0	1	1	0	0	0
OR6A2	8590	ucsc.edu	37	11	6816666	6816666	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	63	6	91	0	0	0	0	0	0
PPFIBP2	8495	ucsc.edu	37	11	7670377	7670377	+	Splice_Site	SNP	G	G	T	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	40	4	47	0	0	0	0	0	0
SPON1	10418	bcgsc.ca	37	11	14101461	14101461	+	RNA	SNP	G	G	T	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	44	7	54	0	24	24	0	0	0
SLC5A12	159963	ucsc.edu	37	11	26732854	26732854	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	63	6	52	0	0	0	0	0	0
KIAA1549L	25758	hgsc.bcm.edu;bcgsc.ca	37	11	33564582	33564582	+	Silent	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	220	15	312	2	0	0	0	0	0
MAPK8IP1	9479	ucsc.edu	37	11	45919735	45919735	+	Silent	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	38	4	48	0	0	0	0	0	0
LRP4	4038	bcgsc.ca	37	11	46907674	46907674	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	149	8	194	0	1	1	0	0	0
MYBPC3	4607	ucsc.edu	37	11	47367809	47367809	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	45	5	53	0	0	0	0	0	0
NDUFS3	4722	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	47604000	47604000	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	378	86	512	1	79	60	19	0	0
MTCH2	23788	ucsc.edu	37	11	47644279	47644279	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	42	4	62	0	98	98	0	0	0
OR4X2	119764	bcgsc.ca	37	11	48266804	48266804	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	147	11	198	0	0	0	0	0	0
LOC283194	0	bcgsc.ca	37	11	58711167	58711167	+	RNA	SNP	T	T	C	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	41	8	56	1	0	0	0	0	0
SLC15A3	51296	bcgsc.ca	37	11	60709553	60709553	+	Missense_Mutation	SNP	G	G	T	rs199700410	alternate_allele	TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	206	10	262	0	162	162	0	0	0
VWCE	220001	ucsc.edu	37	11	61048186	61048186	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	45	5	62	0	0	0	0	0	0
RPLP0P2	113157	ucsc.edu	37	11	61404640	61404640	+	RNA	SNP	G	G	T	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	33	4	66	0	2166	3	2162	1	0
AHNAK	79026	ucsc.edu	37	11	62291914	62291914	+	Silent	SNP	G	G	T	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	41	4	66	0	222	219	0	1	2
TUT1	64852	ucsc.edu	37	11	62348883	62348883	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	26	4	48	0	9	9	0	0	0
B3GAT3	26229	ucsc.edu	37	11	62384640	62384640	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	31	4	58	1	46	46	0	0	0
GANAB	23193	bcgsc.ca	37	11	62401841	62401841	+	Silent	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	161	8	209	0	3	3	0	0	0
HNRNPUL2	221092	ucsc.edu;bcgsc.ca	37	11	62483371	62483371	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	20	5	43	0	144	144	0	0	0
WDR74	54663	ucsc.edu	37	11	62600441	62600441	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	40	4	19	0	9	9	0	0	0
WDR74	54663	ucsc.edu	37	11	62603210	62603210	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	43	4	45	0	12	12	0	0	0
MARK2	2011	bcgsc.ca	37	11	63668038	63668038	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	199	9	321	4	0	0	0	0	0
MRPL11	65003	ucsc.edu	37	11	66206200	66206200	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	16	4	33	0	15	15	0	0	0
CCDC87	55231	ucsc.edu;bcgsc.ca	37	11	66359147	66359147	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	85	9	118	0	0	0	0	0	0
RBM14	10432	ucsc.edu	37	11	66393065	66393065	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	27	4	41	0	40	40	0	0	0
PPP1CA	5499	ucsc.edu	37	11	67167076	67167076	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	41	4	55	0	216	215	0	1	0
SHANK2	22941	ucsc.edu;bcgsc.ca	37	11	70332267	70332267	+	Silent	SNP	C	C	A	rs151081661	alternate_allele	TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	45	6	79	0	4	4	0	0	0
NADSYN1	55191	ucsc.edu	37	11	71212387	71212387	+	Missense_Mutation	SNP	G	G	T	rs12282060	byfrequency;alternate_allele	TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	21	4	16	0	25	25	0	0	0
NUMA1	4926	bcgsc.ca	37	11	71715072	71715072	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	174	9	243	2	45	45	0	0	0
CLPB	81570	ucsc.edu	37	11	72005138	72005138	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	36	4	49	0	26	26	0	0	0
ARAP1	116985	ucsc.edu	37	11	72418367	72418367	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	37	5	57	0	35	35	0	0	0
ARHGEF17	9828	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	73020521	73020521	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	50	13	82	0	12	9	3	0	0
XRRA1	143570	ucsc.edu	37	11	74554954	74554954	+	Silent	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	35	4	41	0	16	16	0	0	0
GDPD5	81544	ucsc.edu	37	11	75173905	75173905	+	Silent	SNP	G	G	T	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	26	4	37	0	4	4	0	0	0
C11orf30	56946	ucsc.edu	37	11	76224452	76224452	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	38	4	53	0	8	8	0	0	0
RSF1	51773	bcgsc.ca	37	11	77413481	77413481	+	Missense_Mutation	SNP	G	G	T	rs202076715	alternate_allele	TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	115	8	133	0	11	11	0	0	0
MAML2	84441	bcgsc.ca	37	11	95713023	95713023	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	71	6	92	0	17	17	0	0	0
ANKK1	255239	ucsc.edu	37	11	113265693	113265693	+	Silent	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	29	4	39	0	0	0	0	0	0
SORL1	6653	bcgsc.ca	37	11	121448064	121448064	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	130	8	122	0	38	38	0	0	0
ROBO3	64221	ucsc.edu	37	11	124738765	124738765	+	Silent	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	14	4	22	0	0	0	0	0	0
ROBO3	64221	ucsc.edu	37	11	124740148	124740148	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	36	4	85	0	0	0	0	0	0
ROBO4	54538	ucsc.edu	37	11	124764977	124764977	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	25	4	40	0	0	0	0	0	0
GLB1L2	89944	bcgsc.ca	37	11	134240205	134240205	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	158	9	214	2	30	30	0	0	0
CD9	928	bcgsc.ca	37	12	6334598	6334598	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	200	10	156	0	0	0	0	0	0
IFFO1	25900	ucsc.edu	37	12	6659932	6659932	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	42	4	46	0	19	19	0	0	0
CD163L1	283316	bcgsc.ca	37	12	7593799	7593799	+	Silent	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	201	10	171	1	3	3	0	0	0
C3AR1	719	bcgsc.ca	37	12	8212674	8212674	+	Silent	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	112	9	94	0	72	72	0	0	0
TAS2R19	259294	bcgsc.ca	37	12	11175067	11175067	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	121	8	93	0	0	0	0	0	0
DDX47	51202	bcgsc.ca	37	12	12967118	12967118	+	Silent	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	365	16	296	2	29	29	0	0	0
GSG1	83445	bcgsc.ca	37	12	13243543	13243543	+	Silent	SNP	G	G	T	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	178	10	195	2	0	0	0	0	0
GRIN2B	2904	bcgsc.ca	37	12	13716628	13716628	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	124	8	113	0	0	0	0	0	0
PIK3C2G	5288	bcgsc.ca	37	12	18534754	18534754	+	Silent	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	208	10	159	0	0	0	0	0	0
MLL2	8085	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	49446075	49446075	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	180	48	166	0	10	7	3	0	0
KCNH3	23416	ucsc.edu	37	12	49949533	49949533	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	43	4	27	0	0	0	0	0	0
ANKRD33	341405	ucsc.edu	37	12	52284612	52284612	+	Silent	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	27	4	35	0	0	0	0	0	0
KRT78	196374	ucsc.edu	37	12	53240601	53240601	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	48	5	26	0	0	0	0	0	0
AMHR2	269	ucsc.edu	37	12	53819355	53819355	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	38	4	52	0	0	0	0	0	0
NEUROD4	58158	bcgsc.ca	37	12	55420844	55420844	+	Silent	SNP	G	G	T	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	197	10	148	0	0	0	0	0	0
LRP1	4035	ucsc.edu	37	12	57570973	57570973	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	59	6	64	0	109	109	0	0	0
METTL21B	25895	ucsc.edu;bcgsc.ca	37	12	58166557	58166557	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	72	8	68	0	8	8	0	0	0
ALX1	8092	bcgsc.ca	37	12	85677441	85677441	+	Silent	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	139	9	92	0	0	0	0	0	0
RASSF9	9182	bcgsc.ca	37	12	86199211	86199211	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	276	13	228	0	1	1	0	0	0
UTP20	27340	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	101684601	101684601	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	95	28	65	1	4	2	2	0	0
USP30	84749	bcgsc.ca	37	12	109495757	109495757	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	284	15	271	0	15	15	0	0	0
TRPV4	59341	ucsc.edu	37	12	110240876	110240876	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	52	5	40	0	21	21	0	0	0
TCTN1	79600	ucsc.edu	37	12	111052133	111052133	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	30	4	24	0	99	99	0	0	0
PTPN11	5781	broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	112892482	112892482	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	50	7	39	0	0	0	0	0	0
C12orf49	79794	ucsc.edu;bcgsc.ca	37	12	117161028	117161028	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	62	7	78	0	0	0	0	0	0
SRRM4	84530	ucsc.edu	37	12	119583466	119583466	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	31	4	24	0	0	0	0	0	0
HSPB8	26353	hgsc.bcm.edu;bcgsc.ca	37	12	119617182	119617182	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	271	14	315	0	447	445	1	1	0
CCDC60	160777	bcgsc.ca	37	12	119926639	119926639	+	Silent	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	127	8	111	1	0	0	0	0	0
OASL	8638	bcgsc.ca	37	12	121465600	121465600	+	Silent	SNP	G	G	T	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	74	7	88	0	3	3	0	0	0
MLXIP	22877	bcgsc.ca	37	12	122614518	122614518	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	71	6	64	0	31	31	0	0	0
ABCB9	23457	broad.mit.edu	37	12	123444428	123444428	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	35	6	43	0	11	6	5	0	0
OGFOD2	79676	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	123463804	123463804	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	70	13	86	0	29	13	16	0	0
DHX37	57647	bcgsc.ca	37	12	125441353	125441353	+	Silent	SNP	G	G	T	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	191	9	176	2	25	25	0	0	0
MPHOSPH8	54737	ucsc.edu	37	13	20220620	20220620	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	38	4	39	0	42	42	0	0	0
SACS	26278	bcgsc.ca	37	13	23905482	23905482	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	139	10	177	0	6	6	0	0	0
RNF17	56163	ucsc.edu	37	13	25425700	25425700	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	26	4	33	0	0	0	0	0	0
FLT1	2321	ucsc.edu	37	13	29012477	29012477	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	34	4	34	0	0	0	0	0	0
SLC7A1	6541	ucsc.edu	37	13	30098344	30098344	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	38	5	79	0	11	11	0	0	0
BRCA2	675	ucsc.edu	37	13	32972842	32972842	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	49	5	37	0	1	1	0	0	0
SLC25A15	10166	bcgsc.ca	37	13	41373270	41373270	+	Silent	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	106	8	155	0	5	5	0	0	0
DNAJC15	29103	ucsc.edu	37	13	43597772	43597772	+	Missense_Mutation	SNP	C	C	A	rs35918532	byfrequency;alternate_allele	TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	21	4	22	0	54	54	0	0	0
CCDC122	160857	ucsc.edu	37	13	44411566	44411566	+	Splice_Site	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	44	5	61	0	0	0	0	0	0
RCBTB1	55213	ucsc.edu	37	13	50123677	50123677	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	57	6	76	0	57	57	0	0	0
NEK5	341676	bcgsc.ca	37	13	52639630	52639630	+	Silent	SNP	C	C	A	rs148904641	alternate_allele	TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	96	6	129	0	0	0	0	0	0
SCEL	8796	bcgsc.ca	37	13	78163340	78163340	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	213	11	214	0	3	3	0	0	0
EDNRB	1910	ucsc.edu	37	13	78474093	78474093	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	47	5	56	0	0	0	0	0	0
GPC6	10082	ucsc.edu	37	13	94938666	94938666	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	41	4	59	0	2	2	0	0	0
FARP1	10160	ucsc.edu	37	13	98865556	98865556	+	Silent	SNP	G	G	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	153	5	249	0	89	81	8	0	0
GPR183	1880	ucsc.edu	37	13	99947906	99947906	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	66	7	70	1	225	225	0	0	0
TUBGCP3	10426	bcgsc.ca	37	13	113223540	113223540	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	118	7	113	0	7	7	0	0	0
TFDP1	7027	ucsc.edu	37	13	114290988	114290988	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	41	4	44	0	40	40	0	0	0
OR4K1	79544	bcgsc.ca	37	14	20404275	20404275	+	Silent	SNP	G	G	T	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	183	9	196	0	0	0	0	0	0
TEP1	7011	bcgsc.ca	37	14	20846219	20846219	+	Silent	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	84	7	153	1	12	12	0	0	0
EDDM3A	10876	ucsc.edu	37	14	21215994	21215994	+	Silent	SNP	G	G	T	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	41	5	53	0	2	2	0	0	0
OR5AU1	390445	ucsc.edu	37	14	21623524	21623524	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	52	5	68	1	0	0	0	0	0
EFS	10278	ucsc.edu	37	14	23826607	23826607	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	40	4	63	0	2	2	0	0	0
EFS	10278	ucsc.edu	37	14	23830000	23830000	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	36	6	59	0	0	0	0	0	0
DHRS2	10202	bcgsc.ca	37	14	24112385	24112385	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	268	13	364	0	0	0	0	0	0
FITM1	161247	bcgsc.ca	37	14	24601870	24601870	+	Silent	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	97	7	113	1	0	0	0	0	0
DHRS1	115817	ucsc.edu	37	14	24768263	24768263	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	32	4	62	0	25	24	1	0	0
ADCY4	196883	ucsc.edu	37	14	24801008	24801008	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	30	4	61	0	0	0	0	0	0
ARHGAP5	394	ucsc.edu	37	14	32615516	32615516	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	53	6	40	0	53	52	1	0	0
GEMIN2	8487	ucsc.edu	37	14	39583635	39583635	+	Silent	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	32	4	67	0	4	4	0	0	0
ARF6	382	ucsc.edu	37	14	50360607	50360607	+	Silent	SNP	G	G	T	rs61755563	alternate_allele	TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	40	5	78	0	136	136	0	0	0
C14orf183	196913	ucsc.edu	37	14	50558408	50558408	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	62	6	55	1	0	0	0	0	0
SOS2	6655	ucsc.edu	37	14	50585249	50585249	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	57	6	85	0	16	16	0	0	0
FRMD6	122786	ucsc.edu	37	14	52174910	52174910	+	Silent	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	51	5	52	0	2	2	0	0	0
PTGDR	5729	bcgsc.ca	37	14	52734813	52734813	+	Missense_Mutation	SNP	G	G	T	rs200280201	alternate_allele	TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	137	7	210	2	0	0	0	0	0
FERMT2	10979	bcgsc.ca	37	14	53360017	53360017	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	165	10	196	0	0	0	0	0	0
DLGAP5	9787	ucsc.edu	37	14	55617544	55617544	+	Silent	SNP	G	G	T	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	37	4	58	0	0	0	0	0	0
SYNE2	23224	ucsc.edu;bcgsc.ca	37	14	64488165	64488165	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	73	9	82	0	15	15	0	0	0
GPHN	10243	bcgsc.ca	37	14	67525471	67525471	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	161	9	193	2	21	21	0	0	0
ACTN1	87	bcgsc.ca	37	14	69378948	69378948	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	138	10	160	0	0	0	0	0	0
ERH	2079	ucsc.edu	37	14	69853682	69853682	+	Silent	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	42	4	37	0	0	0	0	0	0
SLC10A1	6554	ucsc.edu	37	14	70246024	70246024	+	Silent	SNP	G	G	T	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	45	5	42	0	0	0	0	0	0
SLC8A3	6547	ucsc.edu	37	14	70512765	70512765	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	37	5	57	0	0	0	0	0	0
ENTPD5	957	ucsc.edu	37	14	74454715	74454715	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	41	4	56	0	14	14	0	0	0
LTBP2	4053	bcgsc.ca	37	14	75070395	75070395	+	Missense_Mutation	SNP	C	C	A	rs143777450	alternate_allele	TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	94	7	140	0	0	0	0	0	0
GPATCH2L	55668	ucsc.edu	37	14	76621214	76621214	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	39	4	58	1	9	9	0	0	0
CEP128	145508	ucsc.edu	37	14	81223283	81223283	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	49	5	39	0	0	0	0	0	0
BTBD7	55727	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	93730186	93730186	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	75	16	89	0	13	7	6	0	0
UNC79	57578	ucsc.edu	37	14	93995632	93995632	+	Silent	SNP	G	G	T	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	44	4	44	0	0	0	0	0	0
CLMN	79789	bcgsc.ca	37	14	95786084	95786084	+	Missense_Mutation	SNP	C	C	A	rs201470524	alternate_allele	TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	39	6	35	0	3	3	0	0	0
TCL1A	8115	bcgsc.ca	37	14	96180382	96180382	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	75	6	89	0	0	0	0	0	0
HHIPL1	84439	ucsc.edu	37	14	100119079	100119079	+	Silent	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	34	4	51	0	1	1	0	0	0
AHNAK2	113146	ucsc.edu	37	14	105405556	105405556	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	37	4	55	0	93	93	0	0	0
BTBD6	90135	ucsc.edu	37	14	105716670	105716670	+	Silent	SNP	G	G	T	rs61746991	alternate_allele	TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	42	4	60	1	29	29	0	0	0
TJP1	7082	bcgsc.ca	37	15	30029501	30029501	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	150	10	155	0	28	28	0	0	0
FAN1	22909	bcgsc.ca	37	15	31220834	31220834	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	170	8	284	0	4	4	0	0	0
RYR3	6263	ucsc.edu	37	15	34072505	34072505	+	Silent	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	43	4	53	0	0	0	0	0	0
EIF2AK4	440275	ucsc.edu	37	15	40226511	40226511	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	28	4	35	0	5	5	0	0	0
MGA	23269	ucsc.edu	37	15	42021482	42021482	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	42	5	59	0	14	14	0	0	0
EPB42	2038	bcgsc.ca	37	15	43512964	43512964	+	Silent	SNP	G	G	T	rs183927436	alternate_allele	TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	197	9	296	0	0	0	0	0	0
TP53BP1	7158	bcgsc.ca	37	15	43699639	43699639	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	105	8	121	0	30	30	0	0	0
MAP1A	4130	ucsc.edu	37	15	43820043	43820043	+	Silent	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	39	4	84	1	1	1	0	0	0
SPG11	80208	ucsc.edu	37	15	44858486	44858486	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	32	4	45	0	37	37	0	0	0
DUOX2	50506	ucsc.edu	37	15	45386775	45386775	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	20	4	27	0	0	0	0	0	0
SLC28A2	9153	ucsc.edu	37	15	45545478	45545478	+	Missense_Mutation	SNP	C	C	A	rs61637002	byfrequency;alternate_allele	TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	46	5	55	0	0	0	0	0	0
FBN1	2200	ucsc.edu	37	15	48787387	48787387	+	Silent	SNP	G	G	T	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	42	5	54	0	4	4	0	0	0
FBN1	2200	ucsc.edu	37	15	48812887	48812887	+	Silent	SNP	G	G	T	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	42	4	68	0	11	11	0	0	0
SLC27A2	11001	broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	50528292	50528292	+	Silent	SNP	G	G	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	75	15	99	0	11	3	7	1	0
HDC	3067	ucsc.edu;bcgsc.ca	37	15	50546856	50546856	+	Silent	SNP	C	C	A	rs200120421	alternate_allele	TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	59	6	55	0	0	0	0	0	0
USP50	373509	ucsc.edu	37	15	50835938	50835938	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	35	4	30	0	0	0	0	0	0
DYX1C1	161582	ucsc.edu;bcgsc.ca	37	15	55790435	55790435	+	Silent	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	38	6	36	0	3	3	0	0	0
CGNL1	84952	ucsc.edu	37	15	57820975	57820975	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	33	4	79	0	43	43	0	0	0
LDHAL6B	92483	ucsc.edu;bcgsc.ca	37	15	59499276	59499276	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	75	8	79	0	0	0	0	0	0
ANXA2	302	ucsc.edu	37	15	60644645	60644645	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	37	4	57	0	791	791	0	0	0
PIF1	80119	ucsc.edu	37	15	65114741	65114741	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	50	5	60	0	0	0	0	0	0
ANKDD1A	348094	ucsc.edu	37	15	65209587	65209587	+	Silent	SNP	G	G	T	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	39	4	32	0	0	0	0	0	0
NPTN	27020	bcgsc.ca	37	15	73866014	73866014	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	104	8	129	1	2	2	0	0	0
ISLR2	57611	ucsc.edu	37	15	74426957	74426957	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	64	6	69	1	0	0	0	0	0
MESDC1	59274	ucsc.edu	37	15	81295210	81295210	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	36	4	40	0	4	4	0	0	0
ZNF592	9640	ucsc.edu	37	15	85327289	85327289	+	Silent	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	34	4	83	0	15	15	0	0	0
ZNF592	9640	bcgsc.ca	37	15	85342401	85342401	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	178	8	254	0	16	16	0	0	0
ALPK3	57538	ucsc.edu	37	15	85360193	85360193	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	40	4	45	0	0	0	0	0	0
ALPK3	57538	ucsc.edu	37	15	85401339	85401339	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	26	4	27	0	18	18	0	0	0
ACAN	176	ucsc.edu	37	15	89389029	89389029	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	14	4	17	0	0	0	0	0	0
HAPLN3	145864	ucsc.edu	37	15	89422415	89422415	+	Silent	SNP	C	C	A	rs182871593	alternate_allele	TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	29	4	64	0	0	0	0	0	0
RLBP1	6017	bcgsc.ca	37	15	89760522	89760522	+	Silent	SNP	G	G	T	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	129	7	178	1	0	0	0	0	0
VPS33B	26276	bcgsc.ca	37	15	91548924	91548924	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	100	7	133	0	0	0	0	0	0
IGF1R	3480	ucsc.edu	37	15	99500554	99500554	+	Silent	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	30	4	69	1	24	24	0	0	0
TARSL2	123283	bcgsc.ca	37	15	102215848	102215848	+	Silent	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	176	8	172	0	14	14	0	0	0
BAIAP3	8938	ucsc.edu	37	16	1398420	1398420	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	29	4	30	0	1	1	0	0	0
PTX4	390667	ucsc.edu	37	16	1536550	1536550	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	43	4	62	0	0	0	0	0	0
PKD1	5310	ucsc.edu	37	16	2140442	2140442	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	39	4	38	0	28	28	0	0	0
C16orf59	80178	ucsc.edu	37	16	2514085	2514085	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	42	4	48	0	0	0	0	0	0
SRRM2	23524	bcgsc.ca	37	16	2815014	2815014	+	Silent	SNP	G	G	T	rs140489489	byfrequency;alternate_allele	TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	212	11	247	0	92	91	1	0	0
SRRM2	23524	ucsc.edu	37	16	2815728	2815728	+	Silent	SNP	G	G	T	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	41	4	52	0	142	142	0	0	0
PRSS21	10942	bcgsc.ca	37	16	2868703	2868703	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	94	7	92	1	1	1	0	0	0
TRAP1	10131	ucsc.edu	37	16	3724472	3724472	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	37	4	56	0	120	120	0	0	0
GLYR1	84656	bcgsc.ca	37	16	4882097	4882097	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	214	13	216	0	72	72	0	0	0
FAM86A	196483	bcgsc.ca	37	16	5135730	5135730	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	155	8	183	0	5	5	0	0	0
ATF7IP2	80063	ucsc.edu	37	16	10567846	10567846	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	48	5	43	0	0	0	0	0	0
TVP23A	780776	ucsc.edu	37	16	10867927	10867927	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	36	6	26	0	0	0	0	0	0
ZC3H7A	29066	bcgsc.ca	37	16	11875281	11875281	+	Silent	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	201	9	231	4	0	0	0	0	0
SYT17	51760	bcgsc.ca	37	16	19195460	19195460	+	Silent	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	297	13	329	2	0	0	0	0	0
ACSM2A	123876	bcgsc.ca	37	16	20486735	20486735	+	Silent	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	196	10	188	0	124	124	0	0	0
DNAH3	55567	bcgsc.ca	37	16	21045358	21045358	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	118	11	123	0	0	0	0	0	0
EEF2K	29904	ucsc.edu	37	16	22268112	22268112	+	Missense_Mutation	SNP	C	C	A	rs138681546	byfrequency;alternate_allele	TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	40	5	62	0	2	2	0	0	0
IL21R	50615	ucsc.edu	37	16	27441434	27441434	+	Silent	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	44	5	45	0	0	0	0	0	0
GTF3C1	2975	bcgsc.ca	37	16	27472809	27472809	+	Silent	SNP	G	G	T	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	154	9	175	0	55	55	0	0	0
ATP2A1	487	ucsc.edu	37	16	28905556	28905556	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	37	4	46	0	0	0	0	0	0
MVP	9961	ucsc.edu	37	16	29845377	29845377	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	35	4	38	0	1	1	0	0	0
CDIPT	10423	ucsc.edu	37	16	29871937	29871937	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	38	4	41	0	126	126	0	0	0
SRCAP	10847	ucsc.edu	37	16	30722324	30722324	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	37	4	41	0	0	0	0	0	0
ARMC5	79798	ucsc.edu	37	16	31473556	31473556	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	40	5	66	0	5	5	0	0	0
ZNF720	124411	bcgsc.ca	37	16	31733987	31733987	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	112	9	180	2	9	9	0	0	0
NLRC5	84166	ucsc.edu;bcgsc.ca	37	16	57075912	57075912	+	Silent	SNP	G	G	T	rs73546859	byfrequency;alternate_allele	TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	45	6	41	0	9	9	0	0	0
USB1	79650	bcgsc.ca	37	16	58036445	58036445	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	137	8	198	0	22	22	0	0	0
GOT2	2806	bcgsc.ca	37	16	58757682	58757682	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	489	17	542	1	44	44	0	0	0
CDH16	1014	ucsc.edu	37	16	66949283	66949283	+	Splice_Site	SNP	T	T	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	65	1	60	0	4	4	0	0	0
PLEKHG4	25894	ucsc.edu;bcgsc.ca	37	16	67314184	67314184	+	Silent	SNP	G	G	T	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	63	6	75	0	1	1	0	0	0
FUK	197258	ucsc.edu	37	16	70504933	70504933	+	Silent	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	25	4	23	0	24	24	0	0	0
TAT	6898	ucsc.edu	37	16	71610124	71610124	+	Silent	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	29	5	33	0	0	0	0	0	0
ZFP1	162239	ucsc.edu;bcgsc.ca	37	16	75204188	75204188	+	Silent	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	63	8	72	0	9	9	0	0	0
CNTNAP4	85445	ucsc.edu	37	16	76523616	76523616	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	38	4	17	0	0	0	0	0	0
MON1B	22879	bcgsc.ca	37	16	77228710	77228710	+	Silent	SNP	G	G	T	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	130	9	187	0	15	15	0	0	0
CDYL2	124359	ucsc.edu	37	16	80718715	80718715	+	Silent	SNP	G	G	T	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	58	6	77	0	6	6	0	0	0
PKD1L2	114780	ucsc.edu	37	16	81248789	81248789	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	33	4	35	0	0	0	0	0	0
GAN	8139	bcgsc.ca	37	16	81390561	81390561	+	Silent	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	225	12	243	0	0	0	0	0	0
MBTPS1	8720	ucsc.edu;bcgsc.ca	37	16	84093018	84093018	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	50	6	48	0	76	76	0	0	0
USP10	9100	ucsc.edu	37	16	84779133	84779133	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	28	4	25	0	57	57	0	0	0
KIAA0513	9764	ucsc.edu	37	16	85112053	85112053	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	36	4	41	0	0	0	0	0	0
BANP	54971	ucsc.edu	37	16	88068946	88068946	+	Silent	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	31	4	41	0	6	6	0	0	0
BANP	54971	ucsc.edu	37	16	88068967	88068967	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	33	4	39	0	8	8	0	0	0
ZC3H18	124245	ucsc.edu	37	16	88688704	88688704	+	Silent	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	32	4	46	0	41	41	0	0	0
TRAPPC2L	51693	bcgsc.ca	37	16	88926307	88926307	+	Silent	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	171	8	193	1	0	0	0	0	0
CDH15	1013	ucsc.edu;bcgsc.ca	37	16	89261471	89261471	+	Missense_Mutation	SNP	G	G	T	rs149307887		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	64	6	39	0	0	0	0	0	0
CDK10	8558	ucsc.edu	37	16	89760640	89760640	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	42	4	47	0	3	3	0	0	0
YWHAE	7531	ucsc.edu	37	17	1265238	1265238	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	41	4	40	0	629	629	0	0	0
PRPF8	10594	bcgsc.ca	37	17	1577166	1577166	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	125	7	106	0	110	110	0	0	0
DPH1	1801	bcgsc.ca	37	17	1943867	1943867	+	Silent	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	128	8	125	0	26	26	0	0	0
P2RX1	5023	bcgsc.ca	37	17	3802293	3802293	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	139	7	149	0	4	4	0	0	0
SPNS3	201305	ucsc.edu	37	17	4381883	4381883	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	18	4	16	0	17	17	0	0	0
NLGN2	57555	bcgsc.ca	37	17	7318875	7318875	+	Silent	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	99	8	116	0	4	4	0	0	0
EFNB3	1949	bcgsc.ca	37	17	7611343	7611343	+	Silent	SNP	C	C	A	rs17854240	bycluster	TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	97	9	123	0	3	3	0	0	0
ARHGEF15	22899	ucsc.edu	37	17	8218518	8218518	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	43	5	47	0	2	2	0	0	0
PIK3R6	146850	broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	8731475	8731475	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	80	9	138	0	13	13	0	0	0
USP43	124739	ucsc.edu	37	17	9596449	9596449	+	Silent	SNP	G	G	T	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	34	4	56	0	0	0	0	0	0
PIGL	9487	ucsc.edu	37	17	16220021	16220021	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	70	7	85	1	1	1	0	0	0
TRPV2	51393	bcgsc.ca	37	17	16335480	16335480	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	116	7	103	0	26	26	0	0	0
COPS3	8533	ucsc.edu	37	17	17174239	17174239	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	62	6	32	0	48	48	0	0	0
FAM83G	644815	ucsc.edu;bcgsc.ca	37	17	18881091	18881091	+	Silent	SNP	G	G	T	rs201046878	byfrequency;alternate_allele	TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	59	7	74	1	0	0	0	0	0
TLCD1	116238	bcgsc.ca	37	17	27051862	27051862	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	106	8	108	0	10	10	0	0	0
DHRS13	147015	ucsc.edu	37	17	27225571	27225571	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	21	4	20	0	6	6	0	0	0
EFCAB5	374786	bcgsc.ca	37	17	28384837	28384837	+	Nonsense_Mutation	SNP	G	G	T	rs183004596	by1000genomes;alternate_allele	TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	171	9	136	1	0	0	0	0	0
NLE1	54475	ucsc.edu	37	17	33469084	33469084	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	35	4	50	0	9	9	0	0	0
SOCS7	30837	ucsc.edu	37	17	36552250	36552250	+	Splice_Site	SNP	G	G	T	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	37	4	48	0	0	0	0	0	0
PSMD3	5709	ucsc.edu	37	17	38153830	38153830	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	54	6	60	0	14	14	0	0	0
WIPF2	147179	bcgsc.ca	37	17	38433420	38433420	+	Silent	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	126	9	124	0	34	34	0	0	0
ACLY	47	ucsc.edu	37	17	40054082	40054082	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	37	4	42	0	0	0	0	0	0
BRCA1	672	bcgsc.ca	37	17	41197784	41197784	+	Silent	SNP	G	G	T	rs41293465	bycluster;alternate_allele	TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	79	6	90	0	4	4	0	0	0
DHX8	1659	bcgsc.ca	37	17	41577385	41577385	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	275	13	346	0	34	34	0	0	0
ADAM11	4185	ucsc.edu	37	17	42851950	42851950	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	34	4	47	0	0	0	0	0	0
KIF18B	146909	ucsc.edu	37	17	43011405	43011405	+	Silent	SNP	G	G	T	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	22	4	19	0	0	0	0	0	0
SCRN2	90507	ucsc.edu	37	17	45916818	45916818	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	39	4	60	0	0	0	0	0	0
B4GALNT2	124872	bcgsc.ca	37	17	47218741	47218741	+	Silent	SNP	G	G	T	rs141409265	byfrequency;alternate_allele	TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	132	8	158	1	2	2	0	0	0
ITGA3	3675	bcgsc.ca	37	17	48149437	48149437	+	Silent	SNP	G	G	T	rs201297040	alternate_allele	TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	109	7	106	0	327	327	0	0	0
COL1A1	1277	ucsc.edu	37	17	48273524	48273524	+	Missense_Mutation	SNP	C	C	A	rs72645357	bycluster;alternate_allele	TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	38	4	80	0	0	0	0	0	0
SPAG9	9043	bcgsc.ca	37	17	49048171	49048171	+	Silent	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	106	10	101	0	48	48	0	0	0
ANKFN1	162282	bcgsc.ca	37	17	54559840	54559840	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	148	10	189	0	0	0	0	0	0
SRSF1	6426	bcgsc.ca	37	17	56084345	56084345	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	129	8	154	0	75	75	0	0	0
BZRAP1	9256	ucsc.edu	37	17	56382531	56382531	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	52	5	69	0	0	0	0	0	0
MTMR4	9110	bcgsc.ca	37	17	56573371	56573371	+	Missense_Mutation	SNP	C	C	A	rs145309683	alternate_allele	TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	392	14	432	1	12	12	0	0	0
TEX14	56155	bcgsc.ca	37	17	56638924	56638924	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	236	11	235	1	1	1	0	0	0
TANC2	26115	ucsc.edu	37	17	61482535	61482535	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	36	4	36	0	1	1	0	0	0
RGS9	8787	ucsc.edu	37	17	63156705	63156705	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	41	5	45	0	0	0	0	0	0
NOL11	25926	broad.mit.edu	37	17	65732103	65732103	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	81	8	90	0	0	0	0	0	0
KIF19	124602	ucsc.edu	37	17	72340429	72340429	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	40	4	75	0	0	0	0	0	0
DNAH17	8632	ucsc.edu	37	17	76563099	76563099	+	Silent	SNP	G	G	T	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	37	4	26	0	0	0	0	0	0
RNF213	57674	bcgsc.ca	37	17	78264396	78264396	+	Silent	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	130	8	147	1	45	45	0	0	0
ASPSCR1	79058	ucsc.edu	37	17	79941439	79941439	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	38	5	37	0	0	0	0	0	0
TBCD	6904	ucsc.edu	37	17	80881599	80881599	+	Silent	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	18	4	19	0	0	0	0	0	0
ENOSF1	55556	bcgsc.ca	37	18	706513	706513	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	140	9	205	0	42	42	0	0	0
EPB41L3	23136	ucsc.edu	37	18	5423509	5423509	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	48	5	63	0	50	49	0	1	0
CEP76	79959	ucsc.edu	37	18	12695293	12695293	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	26	4	26	0	1	1	0	0	0
LAMA3	3909	ucsc.edu	37	18	21338392	21338392	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	46	6	38	0	8	8	0	0	0
CCDC178	374864	ucsc.edu	37	18	30991995	30991995	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	35	4	29	0	0	0	0	0	0
ASXL3	80816	hgsc.bcm.edu	37	18	31318454	31318454	+	Silent	SNP	G	G	C	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	36	2	27	0	0	0	0	0	0
EPG5	57724	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	43440155	43440155	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	90	18	145	0	12	10	2	0	0
ST8SIA5	29906	bcgsc.ca	37	18	44266171	44266171	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	71	6	78	0	0	0	0	0	0
CTIF	9811	bcgsc.ca	37	18	46385785	46385785	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	87	7	123	1	12	12	0	0	0
LIPG	9388	ucsc.edu	37	18	47091729	47091729	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	50	6	84	0	9	9	0	0	0
NARS	4677	bcgsc.ca	37	18	55287843	55287843	+	Silent	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	170	9	194	1	107	107	0	0	0
ZNF532	55205	ucsc.edu	37	18	56586955	56586955	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	32	3	50	0	5	5	0	0	0
CCDC102B	79839	bcgsc.ca	37	18	66504227	66504227	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	156	10	204	1	5	5	0	0	0
SALL3	27164	ucsc.edu	37	18	76754980	76754980	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	62	6	90	0	0	0	0	0	0
MIDN	90007	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	1257046	1257048	+	In_Frame_Del	DEL	GCT	GCT	-	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	GCT	GCT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	40	10	70	0	0	0	0	0	0
ADAMTSL5	339366	ucsc.edu	37	19	1506190	1506190	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	38	4	53	0	1	1	0	0	0
TLE6	79816	ucsc.edu	37	19	2989300	2989300	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	33	4	66	0	0	0	0	0	0
PIAS4	51588	bcgsc.ca	37	19	4012940	4012940	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	117	9	182	1	11	11	0	0	0
PLIN3	10226	ucsc.edu	37	19	4852247	4852247	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	25	4	46	1	59	58	0	0	1
KDM4B	23030	bcgsc.ca	37	19	5032906	5032906	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	111	8	169	0	10	10	0	0	0
ZNRF4	148066	ucsc.edu;bcgsc.ca	37	19	5456679	5456679	+	Silent	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	55	6	87	0	0	0	0	0	0
LONP1	9361	ucsc.edu	37	19	5708362	5708362	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	35	4	48	0	0	0	0	0	0
TRIP10	9322	bcgsc.ca	37	19	6750377	6750377	+	Silent	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	80	6	96	0	54	54	0	0	0
FBN3	84467	ucsc.edu	37	19	8171076	8171076	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	42	4	59	0	0	0	0	0	0
MYO1F	4542	ucsc.edu	37	19	8613174	8613174	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	42	4	66	0	44	44	0	0	0
ADAMTS10	81794	ucsc.edu	37	19	8662144	8662144	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	38	4	71	0	0	0	0	0	0
FBXL12	54850	ucsc.edu	37	19	9921676	9921676	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	41	4	57	0	1	1	0	0	0
TYK2	7297	ucsc.edu;bcgsc.ca	37	19	10468591	10468591	+	Missense_Mutation	SNP	C	C	A	rs148823525	alternate_allele	TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	45	7	76	0	1	1	0	0	0
RFX1	5989	ucsc.edu	37	19	14076475	14076475	+	Silent	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	36	4	39	0	14	14	0	0	0
LPHN1	22859	ucsc.edu	37	19	14261619	14261619	+	RNA	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	38	5	48	0	7	7	0	0	0
LPHN1	22859	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	14263148	14263148	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	69	7	110	0	5	2	3	0	0
LPHN1	22859	ucsc.edu	37	19	14272134	14272134	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	37	4	54	0	4	4	0	0	0
EMR2	30817	ucsc.edu	37	19	14884819	14884819	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	142	1	210	0	74	47	27	0	0
ILVBL	10994	ucsc.edu	37	19	15233557	15233557	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	63	6	110	0	43	43	0	0	0
KIAA1683	80726	ucsc.edu	37	19	18376585	18376585	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	37	4	66	0	1	1	0	0	0
LPAR2	9170	broad.mit.edu	37	19	19735163	19735163	+	Missense_Mutation	SNP	G	G	A	rs144007983		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	75	6	109	0	3	3	0	0	0
ZNF493	284443	ucsc.edu	37	19	21606719	21606719	+	Missense_Mutation	SNP	C	C	A	rs201385477	alternate_allele	TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	48	5	65	1	5	5	0	0	0
ZNF429	353088	ucsc.edu	37	19	21719585	21719585	+	Missense_Mutation	SNP	C	C	A	rs190803666	alternate_allele	TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	43	4	74	0	2	2	0	0	0
ZNF43	7594	ucsc.edu	37	19	21990819	21990819	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	48	5	100	0	66	66	0	0	0
SLC7A9	11136	ucsc.edu	37	19	33355186	33355186	+	Silent	SNP	G	G	T	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	42	5	50	0	6	6	0	0	0
GRAMD1A	57655	ucsc.edu	37	19	35510143	35510143	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	51	5	74	0	37	37	0	0	0
MLL4	8085	ucsc.edu	37	19	36218068	36218068	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	19	4	24	0	0	0	0	0	0
MLL4	8085	ucsc.edu	37	19	36229070	36229070	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	40	4	50	0	11	11	0	0	0
IGFLR1	79713	ucsc.edu	37	19	36231987	36231987	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	50	5	72	0	28	28	0	0	0
ZNF420	147923	hgsc.bcm.edu	37	19	37618799	37618799	+	Silent	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	107	6	127	0	0	0	0	0	0
RYR1	6261	ucsc.edu	37	19	38966067	38966067	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	28	4	68	0	1	1	0	0	0
ACTN4	81	bcgsc.ca	37	19	39196735	39196735	+	Missense_Mutation	SNP	C	C	A	rs149027682	byfrequency;alternate_allele	TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	72	7	106	0	229	229	0	0	0
NUMBL	9253	ucsc.edu	37	19	41174044	41174044	+	Splice_Site	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	28	5	17	0	0	0	0	0	0
GRIK5	2901	ucsc.edu	37	19	42558561	42558561	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	51	5	108	0	0	0	0	0	0
ZNF576	79177	ucsc.edu	37	19	44103313	44103313	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	41	5	54	0	14	14	0	0	0
SMG9	56006	ucsc.edu	37	19	44241773	44241773	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	42	5	64	0	5	5	0	0	0
ZNF229	7772	ucsc.edu	37	19	44933955	44933955	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	43	4	77	0	0	0	0	0	0
PPP1R13L	10848	ucsc.edu	37	19	45885974	45885974	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	30	4	73	0	0	0	0	0	0
PPM1N	147699	ucsc.edu	37	19	46002457	46002457	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	52	5	61	0	1	1	0	0	0
OPA3	80207	bcgsc.ca	37	19	46032614	46032614	+	Silent	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	163	9	233	2	3	3	0	0	0
SEC1P	653677	ucsc.edu	37	19	49183691	49183691	+	RNA	SNP	G	G	T	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	28	4	55	0	0	0	0	0	0
LIN7B	64130	ucsc.edu	37	19	49619661	49619661	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	42	4	52	0	2	2	0	0	0
ALDH16A1	126133	ucsc.edu	37	19	49967450	49967450	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	30	4	29	0	37	37	0	0	0
MED25	81857	ucsc.edu	37	19	50340145	50340145	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	27	4	35	0	27	27	0	0	0
SIGLEC11	114132	hgsc.bcm.edu	37	19	50462728	50462728	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	35	3	57	1	5	5	0	0	0
FAM71E1	112703	ucsc.edu	37	19	50970945	50970945	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	23	4	12	0	4	4	0	0	0
SYT3	84258	hgsc.bcm.edu	37	19	51135725	51135725	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	37	2	59	0	0	0	0	0	0
KLK4	9622	bcgsc.ca	37	19	51412561	51412561	+	Silent	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	254	12	386	3	0	0	0	0	0
MIR517A	574479	ucsc.edu;bcgsc.ca	37	19	54215537	54215537	+	RNA	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	78	8	89	1	0	0	0	0	0
LILRA4	23547	ucsc.edu	37	19	54848779	54848779	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	40	4	50	0	53	53	0	0	0
PTPRH	5794	ucsc.edu	37	19	55697671	55697671	+	Silent	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	60	6	95	1	0	0	0	0	0
ZNF548	147694	ucsc.edu	37	19	57910487	57910487	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	53	5	77	0	5	5	0	0	0
RAD51AP2	729475	bcgsc.ca	37	2	17699244	17699244	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	74	7	82	0	0	0	0	0	0
OTOF	9381	ucsc.edu	37	2	26683822	26683822	+	Silent	SNP	G	G	T	rs141119917	alternate_allele	TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	36	4	75	0	0	0	0	0	0
OTOF	9381	ucsc.edu	37	2	26706440	26706440	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	44	5	66	0	0	0	0	0	0
KHK	3795	ucsc.edu	37	2	27322576	27322576	+	Silent	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	41	4	53	0	41	41	0	0	0
CAD	790	bcgsc.ca	37	2	27456643	27456643	+	Silent	SNP	C	C	A	rs150127787	byfrequency;alternate_allele	TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	66	6	95	0	17	17	0	0	0
FNDC4	64838	ucsc.edu	37	2	27716950	27716950	+	Silent	SNP	G	G	T	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	53	5	58	0	5	5	0	0	0
C2orf16	84226	bcgsc.ca	37	2	27803644	27803644	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	137	9	174	0	1	1	0	0	0
BIRC6	57448	ucsc.edu	37	2	32820111	32820111	+	Silent	SNP	G	G	T	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	32	4	29	0	0	0	0	0	0
GALM	130589	ucsc.edu	37	2	38916962	38916962	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	41	4	82	0	0	0	0	0	0
EML4	27436	ucsc.edu	37	2	42557160	42557160	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	39	5	56	0	40	40	0	0	0
NRXN1	9378	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	50149203	50149203	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	111	16	130	1	0	0	0	0	0
TSPYL6	388951	ucsc.edu	37	2	54483007	54483007	+	Silent	SNP	G	G	T	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	43	4	81	0	0	0	0	0	0
RTN4	57142	ucsc.edu	37	2	55209651	55209651	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	30	4	45	0	0	0	0	0	0
MTIF2	4528	ucsc.edu	37	2	55467312	55467312	+	Splice_Site	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	54	5	44	0	0	0	0	0	0
CCDC88A	55704	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	55523606	55523606	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	68	19	104	0	25	24	1	0	0
XPO1	7514	bcgsc.ca	37	2	61715355	61715355	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	158	11	154	0	40	40	0	0	0
FAM161A	84140	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	62067675	62067675	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	67	8	90	0	2	1	1	0	0
MEIS1	4211	bcgsc.ca	37	2	66670064	66670064	+	Silent	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	355	14	451	0	2	2	0	0	0
WDR92	116143	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	68368907	68368907	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	201	31	248	2	4	3	1	0	0
SFXN5	94097	ucsc.edu	37	2	73247384	73247384	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	40	4	36	0	0	0	0	0	0
ALMS1	7840	ucsc.edu	37	2	73682419	73682419	+	Silent	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	46	6	51	0	0	0	0	0	0
MOB1A	55233	bcgsc.ca	37	2	74394143	74394143	+	Silent	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	145	9	110	0	0	0	0	0	0
SLC4A5	57835	bcgsc.ca	37	2	74458396	74458396	+	Silent	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	76	7	79	0	0	0	0	0	0
INO80B	83444	ucsc.edu	37	2	74683252	74683252	+	Silent	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	40	4	59	1	43	43	0	0	0
AUP1	550	ucsc.edu	37	2	74756022	74756022	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	40	5	111	0	168	168	0	0	0
MAT2A	4144	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	85770091	85770091	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	143	28	172	0	50	38	12	0	0
CNOT11	55571	bcgsc.ca	37	2	101874319	101874319	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	96	7	105	1	19	19	0	0	0
SLC5A7	60482	ucsc.edu	37	2	108624955	108624955	+	Silent	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	45	5	39	0	0	0	0	0	0
SULT1C3	442038	ucsc.edu	37	2	108868934	108868934	+	Missense_Mutation	SNP	C	C	A	rs199656598		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	37	4	30	0	0	0	0	0	0
NPHP1	4867	ucsc.edu	37	2	110919199	110919199	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	49	5	48	0	11	11	0	0	0
LOC150776	0	ucsc.edu	37	2	132259032	132259032	+	RNA	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	40	4	44	0	1	1	0	0	0
NCKAP5	344148	ucsc.edu	37	2	133540394	133540394	+	Silent	SNP	G	G	T	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	30	4	58	0	3	3	0	0	0
LCT	3938	bcgsc.ca	37	2	136569955	136569955	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	111	8	120	1	0	0	0	0	0
MCM6	4175	bcgsc.ca	37	2	136620300	136620300	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	69	6	75	0	10	10	0	0	0
LRP1B	53353	ucsc.edu	37	2	141283492	141283492	+	Silent	SNP	G	G	T	rs143446090	byfrequency;alternate_allele	TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	52	7	64	1	0	0	0	0	0
ORC4	5000	ucsc.edu	37	2	148712964	148712964	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	27	4	37	0	0	0	0	0	0
KIF5C	3800	ucsc.edu;bcgsc.ca	37	2	149837880	149837880	+	Silent	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	23	6	21	0	0	0	0	0	0
PHOSPHO2	493911	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	2	170557930	170557930	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	75	13	90	0	1	1	0	0	0
PLEKHA3	65977	ucsc.edu	37	2	179368700	179368700	+	RNA	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	21	6	24	0	9	7	2	0	0
TTN	7273	ucsc.edu	37	2	179406207	179406207	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	39	4	50	0	3	3	0	0	0
TTN	7273	bcgsc.ca	37	2	179431647	179431647	+	Silent	SNP	G	G	T	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	131	8	145	0	0	0	0	0	0
TTN	7273	bcgsc.ca	37	2	179474447	179474447	+	Silent	SNP	G	G	T	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	201	10	267	0	0	0	0	0	0
TTN	7273	bcgsc.ca	37	2	179640549	179640549	+	Silent	SNP	G	G	T	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	200	9	218	0	0	0	0	0	0
SDPR	8436	bcgsc.ca	37	2	192700829	192700829	+	Silent	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	148	8	201	1	38	38	0	0	0
CRYGB	1419	ucsc.edu;bcgsc.ca	37	2	209010842	209010842	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	62	7	108	0	0	0	0	0	0
PIKFYVE	200576	ucsc.edu	37	2	209176980	209176980	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	50	6	40	0	10	10	0	0	0
MAP2	4133	ucsc.edu	37	2	210558772	210558772	+	Silent	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	32	4	66	1	0	0	0	0	0
RPE	6120	ucsc.edu	37	2	210884445	210884445	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	52	5	58	1	23	23	0	0	0
ABCA12	26154	ucsc.edu;bcgsc.ca	37	2	215819926	215819926	+	Silent	SNP	C	C	A	rs200758693	alternate_allele	TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	53	6	46	0	0	0	0	0	0
SLC11A1	6556	ucsc.edu	37	2	219254617	219254617	+	Silent	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	31	4	50	0	0	0	0	0	0
IHH	3549	ucsc.edu	37	2	219920490	219920490	+	Silent	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	43	5	77	0	5	5	0	0	0
ANKZF1	55139	bcgsc.ca	37	2	220098983	220098983	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	119	9	136	0	11	11	0	0	0
SPEG	10290	ucsc.edu	37	2	220355236	220355236	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	43	4	63	0	0	0	0	0	0
CHPF	79586	ucsc.edu	37	2	220406737	220406737	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	15	4	20	0	54	54	0	0	0
PAX3	5077	ucsc.edu	37	2	223161800	223161800	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	41	4	41	0	0	0	0	0	0
COL4A4	1286	ucsc.edu	37	2	227876908	227876908	+	Missense_Mutation	SNP	G	G	T	rs192942886	by1000genomes;alternate_allele	TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	41	4	50	0	0	0	0	0	0
PSMD1	5707	broad.mit.edu;bcgsc.ca	37	2	231943417	231943417	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	78	12	82	0	0	0	0	0	0
GIGYF2	26058	bcgsc.ca	37	2	233655500	233655500	+	Silent	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	164	8	211	1	30	30	0	0	0
CXCR7	57007	bcgsc.ca	37	2	237489921	237489921	+	Silent	SNP	G	G	T	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	209	10	246	0	4	4	0	0	0
COPS8	10920	ucsc.edu	37	2	238004496	238004496	+	Silent	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	42	4	50	0	78	78	0	0	0
RAB17	64284	ucsc.edu	37	2	238486776	238486776	+	Silent	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	34	4	52	0	21	21	0	0	0
ESPNL	339768	ucsc.edu	37	2	239013307	239013307	+	Silent	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	27	5	46	0	0	0	0	0	0
OR6B2	389090	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	240969643	240969643	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	168	20	242	0	0	0	0	0	0
KIF1A	547	ucsc.edu	37	2	241697805	241697805	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	37	5	49	0	2	2	0	0	0
KIF1A	547	ucsc.edu	37	2	241715279	241715279	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	44	5	61	0	0	0	0	0	0
MGME1	92667	broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	17950811	17950811	+	Silent	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	96	14	104	0	24	20	3	0	1
C20orf26	26074	bcgsc.ca	37	20	20051641	20051641	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	86	7	69	0	0	0	0	0	0
RALGAPA2	57186	ucsc.edu	37	20	20486114	20486114	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	24	4	35	0	12	12	0	0	0
RALGAPA2	57186	ucsc.edu	37	20	20493668	20493668	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	35	4	28	0	6	6	0	0	0
CD93	22918	ucsc.edu	37	20	23065771	23065771	+	Silent	SNP	G	G	T	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	46	5	54	0	5	5	0	0	0
VSX1	30813	ucsc.edu	37	20	25060106	25060106	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	41	5	34	0	0	0	0	0	0
EPB41L1	2036	ucsc.edu	37	20	34806841	34806841	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	40	5	59	0	228	228	0	0	0
MROH8	140699	bcgsc.ca	37	20	35769661	35769661	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	19	5	34	0	0	0	0	0	0
SERINC3	10955	ucsc.edu;bcgsc.ca	37	20	43128950	43128950	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	31	5	42	0	124	124	0	0	0
STK4	6789	ucsc.edu	37	20	43629037	43629037	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	40	4	31	0	0	0	0	0	0
CTSA	5476	bcgsc.ca	37	20	44520946	44520946	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	283	13	305	0	509	508	1	0	0
PCIF1	63935	ucsc.edu	37	20	44569770	44569770	+	Silent	SNP	C	C	A	rs201267070	alternate_allele	TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	39	4	47	0	53	53	0	0	0
ELMO2	63916	bcgsc.ca	37	20	45022174	45022174	+	Silent	SNP	G	G	T	rs139415068	alternate_allele	TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	410	14	452	4	1	1	0	0	0
SLC13A3	64849	hgsc.bcm.edu	37	20	45195024	45195024	+	Silent	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	118	7	152	1	0	0	0	0	0
CBLN4	140689	bcgsc.ca	37	20	54579048	54579048	+	Silent	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	94	8	137	0	0	0	0	0	0
RAE1	8480	ucsc.edu	37	20	55931542	55931542	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	28	4	24	0	26	26	0	0	0
ZNF831	128611	bcgsc.ca	37	20	57767922	57767922	+	Silent	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	131	9	113	1	1	1	0	0	0
CABLES2	81928	ucsc.edu	37	20	60969999	60969999	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	31	4	43	0	1	1	0	0	0
DIDO1	11083	bcgsc.ca	37	20	61513251	61513251	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	180	9	242	2	8	8	0	0	0
KCNQ2	3785	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	62070959	62070959	+	Silent	SNP	G	G	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	75	28	89	0	0	0	0	0	0
NCAM2	4685	ucsc.edu	37	21	22707920	22707920	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	37	4	50	0	0	0	0	0	0
TIAM1	7074	ucsc.edu	37	21	32492781	32492781	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	63	6	98	0	8	8	0	0	0
DSCR3	10311	ucsc.edu	37	21	38604680	38604680	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	46	5	66	0	0	0	0	0	0
DSCAM	1826	bcgsc.ca	37	21	42080530	42080530	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	102	7	131	0	0	0	0	0	0
TRPM2	7226	ucsc.edu;bcgsc.ca	37	21	45820224	45820224	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	45	6	64	1	13	13	0	0	0
PCBP3	54039	ucsc.edu	37	21	47330827	47330827	+	Silent	SNP	C	C	A	rs199793318		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	35	4	62	0	0	0	0	0	0
PCNT	5116	ucsc.edu;bcgsc.ca	37	21	47862448	47862448	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	50	6	62	0	3	3	0	0	0
DIP2A	23181	ucsc.edu	37	21	47924305	47924305	+	Silent	SNP	G	G	T	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	33	4	49	0	5	5	0	0	0
PRMT2	3275	bcgsc.ca	37	21	48064352	48064352	+	Silent	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	113	8	181	0	81	81	0	0	0
IL17RA	23765	ucsc.edu	37	22	17589523	17589523	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	38	4	45	0	6	6	0	0	0
CECR2	27443	ucsc.edu	37	22	18020293	18020293	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	37	4	51	0	0	0	0	0	0
CLDN5	7122	ucsc.edu	37	22	19511366	19511366	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	23	4	34	0	2	2	0	0	0
THAP7-AS1	439931	ucsc.edu	37	22	21363694	21363694	+	RNA	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	38	4	68	0	2	2	0	0	0
ZDHHC8P1	150244	ucsc.edu	37	22	23742752	23742752	+	RNA	SNP	G	G	T	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	21	5	28	0	3	3	0	0	0
GUSBP11	91316	ucsc.edu	37	22	24056395	24056395	+	RNA	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	18	4	33	0	4	4	0	0	0
SUSD2	56241	ucsc.edu	37	22	24582269	24582269	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	38	5	44	0	7	7	0	0	0
TPST2	8459	ucsc.edu	37	22	26937378	26937378	+	Silent	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	41	4	54	0	14	14	0	0	0
GAS2L1	10634	ucsc.edu	37	22	29704112	29704112	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	37	4	25	0	3	3	0	0	0
THOC5	8563	ucsc.edu	37	22	29908044	29908044	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	52	5	72	0	16	16	0	0	0
MTMR3	8897	bcgsc.ca	37	22	30416142	30416142	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	124	8	140	0	24	24	0	0	0
SEC14L4	284904	ucsc.edu	37	22	30886109	30886109	+	Silent	SNP	G	G	T	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	28	4	49	0	0	0	0	0	0
SLC35E4	339665	ucsc.edu	37	22	31043003	31043003	+	Silent	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	49	5	58	0	1	1	0	0	0
TNRC6B	23112	ucsc.edu;bcgsc.ca	37	22	40711447	40711447	+	Silent	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	63	7	99	0	11	11	0	0	0
EP300	2033	bcgsc.ca	37	22	41537185	41537185	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	146	10	166	0	17	17	0	0	0
L3MBTL2	83746	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	22	41621916	41621916	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	70	6	97	0	26	25	1	0	0
SREBF2	6721	ucsc.edu	37	22	42276948	42276948	+	Silent	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	44	5	54	0	32	32	0	0	0
WBP2NL	164684	bcgsc.ca	37	22	42422872	42422872	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	201	11	344	1	1	1	0	0	0
CYP2D7P1	1564	ucsc.edu	37	22	42537234	42537234	+	RNA	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	32	4	35	0	1	1	0	0	0
BIK	638	bcgsc.ca	37	22	43524614	43524614	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	107	8	130	1	4	4	0	0	0
KIAA0930	23313	bcgsc.ca	37	22	45607845	45607845	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	129	8	164	0	0	0	0	0	0
ATXN10	25814	bcgsc.ca	37	22	46238911	46238911	+	Silent	SNP	C	C	A	rs199724468	alternate_allele	TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	139	10	183	0	43	43	0	0	0
GRAMD4	23151	bcgsc.ca	37	22	47059987	47059987	+	Silent	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	156	10	170	1	26	26	0	0	0
MIOX	55586	ucsc.edu	37	22	50926739	50926739	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	44	5	70	0	356	356	0	0	0
ITPR1	3708	ucsc.edu	37	3	4687299	4687299	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	39	4	37	0	9	9	0	0	0
ITPR1	3708	ucsc.edu	37	3	4726881	4726881	+	Silent	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	31	5	15	0	0	0	0	0	0
SLC6A6	6533	ucsc.edu	37	3	14487348	14487348	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	65	6	78	0	0	0	0	0	0
SH3BP5	9467	ucsc.edu	37	3	15298393	15298393	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	26	4	29	0	42	42	0	0	0
BTD	686	ucsc.edu;bcgsc.ca	37	3	15686274	15686274	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	95	10	136	1	46	45	1	0	0
SLC22A14	9389	bcgsc.ca	37	3	38357176	38357176	+	Silent	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	213	12	220	0	0	0	0	0	0
RPL14	9045	hgsc.bcm.edu	37	3	40503557	40503557	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	37	2	49	2	733	729	1	0	3
ULK4	54986	bcgsc.ca	37	3	41949345	41949345	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	136	9	123	0	0	0	0	0	0
CCR9	10803	ucsc.edu	37	3	45943385	45943385	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	52	5	47	0	3	3	0	0	0
ALS2CL	259173	ucsc.edu	37	3	46728490	46728490	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	35	5	42	0	13	13	0	0	0
ALS2CL	259173	ucsc.edu	37	3	46730892	46730892	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	36	4	27	0	2	2	0	0	0
NBEAL2	23218	ucsc.edu	37	3	47030653	47030653	+	Silent	SNP	G	G	T	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	49	5	48	0	0	0	0	0	0
PLXNB1	5364	ucsc.edu	37	3	48462118	48462118	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	41	4	63	0	50	50	0	0	0
WDR6	11180	ucsc.edu	37	3	49050465	49050465	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	37	5	58	0	59	59	0	0	0
MAPKAPK3	7867	bcgsc.ca	37	3	50683621	50683621	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	183	8	288	0	173	173	0	0	0
GRM2	2912	ucsc.edu;bcgsc.ca	37	3	51749380	51749380	+	Silent	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	52	6	57	0	0	0	0	0	0
DNAH1	25981	ucsc.edu;bcgsc.ca	37	3	52386588	52386588	+	Silent	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	72	7	87	0	0	0	0	0	0
NISCH	11188	bcgsc.ca	37	3	52518612	52518612	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	136	9	132	0	13	13	0	0	0
SPCS1	28972	bcgsc.ca	37	3	52740848	52740848	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	294	12	309	5	232	232	0	0	0
ACTR8	93973	ucsc.edu	37	3	53908326	53908326	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	51	5	50	0	25	25	0	0	0
ERC2	26059	bcgsc.ca	37	3	56026194	56026194	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	307	13	285	1	0	0	0	0	0
FLNB	2317	ucsc.edu	37	3	58116480	58116480	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	40	4	41	0	0	0	0	0	0
FLNB	2317	ucsc.edu	37	3	58116533	58116533	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	42	4	50	0	62	62	0	0	0
CADPS	8618	ucsc.edu;bcgsc.ca	37	3	62648042	62648042	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	94	9	114	0	0	0	0	0	0
SUCLG2	8801	bcgsc.ca	37	3	67659948	67659948	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	112	7	77	0	102	101	0	1	0
GPR128	84873	bcgsc.ca	37	3	100373864	100373864	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	214	10	164	0	0	0	0	0	0
ZBTB11	27107	bcgsc.ca	37	3	101378727	101378727	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	105	8	106	0	6	6	0	0	0
CBLB	868	ucsc.edu	37	3	105439085	105439085	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	41	5	46	0	0	0	0	0	0
DZIP3	9666	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	108324275	108324275	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	96	20	94	0	0	0	0	0	0
PHLDB2	90102	bcgsc.ca	37	3	111603276	111603276	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	430	17	445	2	20	20	0	0	0
PHLDB2	90102	bcgsc.ca	37	3	111632373	111632373	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	140	9	186	0	31	31	0	0	0
WDR52	55779	ucsc.edu	37	3	113138950	113138950	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	47	5	59	0	3	3	0	0	0
LSAMP	4045	ucsc.edu	37	3	115805256	115805256	+	Silent	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	49	5	71	0	0	0	0	0	0
SLC12A8	84561	ucsc.edu	37	3	124807171	124807171	+	Silent	SNP	G	G	T	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	39	4	69	0	10	10	0	0	0
EFCAB12	90288	ucsc.edu	37	3	129120677	129120677	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	37	4	34	0	3	3	0	0	0
ACAD11	84129	ucsc.edu	37	3	132358451	132358451	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	49	5	63	0	21	21	0	0	0
NPHP3	27031	bcgsc.ca	37	3	132410126	132410126	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	204	13	197	1	0	0	0	0	0
KCNAB1	7881	bcgsc.ca	37	3	156192601	156192601	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	199	11	261	0	0	0	0	0	0
OTOL1	131149	ucsc.edu	37	3	161221372	161221372	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	34	5	52	0	0	0	0	0	0
GOLIM4	27333	ucsc.edu	37	3	167812901	167812901	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	40	4	48	0	0	0	0	0	0
KCNMB2	10242	ucsc.edu	37	3	178546161	178546161	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	38	4	39	0	0	0	0	0	0
MCCC1	56922	ucsc.edu	37	3	182775188	182775188	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	27	4	18	0	30	30	0	0	0
MCCC1	56922	ucsc.edu	37	3	182810334	182810334	+	Splice_Site	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	40	4	32	0	0	0	0	0	0
VPS8	23355	ucsc.edu	37	3	184644404	184644404	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	16	4	27	0	30	30	0	0	0
LIPH	200879	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	185241864	185241865	+	Frame_Shift_Del	DEL	AA	AA	-	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	AA	AA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	63	24	60	0	0	0	0	0	0
ATP13A4	84239	bcgsc.ca	37	3	193175210	193175210	+	Silent	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	244	11	196	1	1	1	0	0	0
MUC20	200958	ucsc.edu	37	3	195452997	195452997	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	39	4	55	0	3	3	0	0	0
UBXN7	26043	ucsc.edu	37	3	196083712	196083712	+	Missense_Mutation	SNP	C	C	A	rs77416847		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	49	5	36	0	0	0	0	0	0
SPON2	10417	bcgsc.ca	37	4	1165716	1165716	+	Silent	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	205	10	279	0	145	145	0	0	0
POLN	353497	bcgsc.ca	37	4	2087472	2087472	+	Splice_Site	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	129	9	151	0	0	0	0	0	0
FAM193A	8603	ucsc.edu	37	4	2701461	2701461	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	43	4	60	1	15	15	0	0	0
ADD1	118	ucsc.edu	37	4	2906685	2906685	+	Silent	SNP	G	G	T	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	42	4	53	0	292	292	0	0	0
DOK7	285489	ucsc.edu	37	4	3475236	3475236	+	Silent	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	58	6	53	1	0	0	0	0	0
MAN2B2	23324	ucsc.edu	37	4	6590862	6590862	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	59	6	104	1	24	24	0	0	0
FGFBP2	83888	bcgsc.ca	37	4	15964215	15964215	+	Silent	SNP	G	G	T	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	235	12	314	1	0	0	0	0	0
PROM1	8842	bcgsc.ca	37	4	15995666	15995666	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	158	8	184	1	80	80	0	0	0
LGI2	55203	ucsc.edu	37	4	25014097	25014097	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	52	5	87	0	2	2	0	0	0
SEPSECS	51091	ucsc.edu	37	4	25156760	25156760	+	Silent	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	35	4	48	0	6	6	0	0	0
TLR1	7096	bcgsc.ca	37	4	38798777	38798777	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	177	8	245	1	14	14	0	0	0
N4BP2	55728	ucsc.edu	37	4	40122777	40122777	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	50	5	53	0	0	0	0	0	0
AFP	174	ucsc.edu	37	4	74301987	74301987	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	43	5	53	0	0	0	0	0	0
CXCL13	10563	ucsc.edu	37	4	78531834	78531834	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	38	4	39	0	0	0	0	0	0
FRAS1	80144	ucsc.edu	37	4	79229221	79229221	+	Silent	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	42	4	38	0	0	0	0	0	0
FRAS1	80144	bcgsc.ca	37	4	79437046	79437046	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	103	7	93	0	8	8	0	0	0
PRDM8	56978	bcgsc.ca	37	4	81123123	81123123	+	Silent	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	218	12	303	3	2	2	0	0	0
THAP9	79725	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	83839493	83839493	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	107	26	101	0	2	2	0	0	0
IBSP	3381	ucsc.edu	37	4	88732830	88732830	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	34	4	57	0	0	0	0	0	0
ADH5	128	ucsc.edu	37	4	100003127	100003127	+	Silent	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	36	5	76	0	1	1	0	0	0
C4orf17	84103	ucsc.edu;bcgsc.ca	37	4	100434255	100434255	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	73	7	110	0	0	0	0	0	0
BANK1	55024	bcgsc.ca	37	4	102946487	102946487	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	82	8	97	0	1	1	0	0	0
SLC39A8	64116	ucsc.edu	37	4	103189038	103189038	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	30	4	32	0	0	0	0	0	0
CENPE	1062	ucsc.edu	37	4	104117196	104117196	+	Splice_Site	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	36	4	35	0	0	0	0	0	0
PLA2G12A	81579	ucsc.edu	37	4	110639868	110639868	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	33	4	28	0	24	24	0	0	0
AP1AR	55435	ucsc.edu	37	4	113189565	113189565	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	40	4	52	0	27	27	0	0	0
C4orf21	55345	bcgsc.ca	37	4	113527198	113527198	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	195	10	202	2	0	0	0	0	0
PDE5A	8654	ucsc.edu	37	4	120427082	120427082	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	41	4	52	1	0	0	0	0	0
PCDH10	57575	ucsc.edu	37	4	134075510	134075510	+	Silent	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	26	4	34	0	0	0	0	0	0
NR3C2	4306	ucsc.edu	37	4	149035311	149035311	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	33	4	44	0	2	2	0	0	0
NR3C2	4306	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	149075914	149075914	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	177	30	289	0	3	2	1	0	0
LRBA	987	ucsc.edu	37	4	151814286	151814286	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	32	5	40	0	18	18	0	0	0
FAT1	2195	bcgsc.ca	37	4	187516905	187516905	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	112	8	104	0	351	350	1	0	0
SDHA	6389	bcgsc.ca	37	5	251134	251134	+	Missense_Mutation	SNP	C	C	A	rs138723511	alternate_allele	TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	150	8	156	0	338	338	0	0	0
TERT	7015	ucsc.edu	37	5	1293509	1293509	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	40	5	49	0	0	0	0	0	0
PAPD7	11044	ucsc.edu	37	5	6739913	6739913	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	61	6	62	0	7	7	0	0	0
TRIO	7204	ucsc.edu	37	5	14497079	14497079	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	30	4	44	0	36	36	0	0	0
UGT3A1	133688	ucsc.edu	37	5	35954366	35954366	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	37	4	43	0	12	12	0	0	0
NIPBL	25836	ucsc.edu	37	5	37022236	37022236	+	Silent	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	47	6	58	0	26	26	0	0	0
RGS7BP	401190	ucsc.edu	37	5	63803670	63803670	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	44	6	59	1	0	0	0	0	0
SREK1	140890	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	65466769	65466769	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	69	17	63	0	1	0	1	0	0
HMGCR	3156	bcgsc.ca	37	5	74650487	74650487	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	77	7	69	0	14	14	0	0	0
MSH3	4437	ucsc.edu	37	5	80109402	80109402	+	Splice_Site	SNP	G	G	T	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	61	6	54	0	0	0	0	0	0
TMEM161B	153396	bcgsc.ca	37	5	87516502	87516502	+	Silent	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	155	10	153	1	6	6	0	0	0
GPR98	84059	ucsc.edu	37	5	89920987	89920987	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	28	4	33	0	0	0	0	0	0
GPR98	84059	ucsc.edu	37	5	90055374	90055374	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	46	5	35	0	0	0	0	0	0
PCSK1	5122	ucsc.edu	37	5	95744016	95744016	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	41	4	37	0	0	0	0	0	0
CAMK4	814	ucsc.edu	37	5	110784889	110784889	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	41	4	47	0	0	0	0	0	0
MCC	4163	bcgsc.ca	37	5	112420915	112420915	+	Silent	SNP	G	G	T	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	269	11	279	2	6	6	0	0	0
YTHDC2	64848	ucsc.edu	37	5	112860747	112860747	+	Silent	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	42	4	34	0	12	12	0	0	0
RAPGEF6	51735	bcgsc.ca	37	5	130846179	130846179	+	Silent	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	79	6	79	0	0	0	0	0	0
SKP1	6500	ucsc.edu	37	5	133509682	133509682	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	51	5	70	0	303	301	1	1	0
DDX46	9879	bcgsc.ca	37	5	134094636	134094636	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	139	10	132	0	0	0	0	0	0
TRPC7	57113	ucsc.edu;bcgsc.ca	37	5	135610371	135610371	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	37	6	42	0	0	0	0	0	0
KLHL3	26249	ucsc.edu	37	5	136974782	136974782	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	36	4	33	0	1	1	0	0	0
KDM3B	51780	bcgsc.ca	37	5	137756629	137756629	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	125	9	133	0	44	44	0	0	0
PCDHB1	29930	bcgsc.ca	37	5	140432357	140432357	+	Silent	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	159	9	135	1	2	2	0	0	0
PCDHB2	56133	ucsc.edu	37	5	140475032	140475032	+	Missense_Mutation	SNP	G	G	T	rs200473303	alternate_allele	TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	39	5	37	0	10	10	0	0	0
PCDHB7	56129	ucsc.edu;bcgsc.ca	37	5	140552890	140552890	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	62	7	75	0	1	1	0	0	0
PCDHGA7	56108	ucsc.edu	37	5	140764916	140764916	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	30	4	52	1	0	0	0	0	0
PCDHGA12	26025	ucsc.edu	37	5	140811782	140811782	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	59	6	81	0	5	5	0	0	0
ARAP3	64411	bcgsc.ca	37	5	141035827	141035827	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	108	7	117	0	1	1	0	0	0
SPRY4	81848	bcgsc.ca	37	5	141694317	141694317	+	Silent	SNP	G	G	T	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	131	9	135	1	7	7	0	0	0
STK32A	202374	bcgsc.ca	37	5	146752790	146752790	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	230	10	243	0	2	2	0	0	0
JAKMIP2	9832	bcgsc.ca	37	5	147030069	147030069	+	Silent	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	84	9	74	0	1	1	0	0	0
FBXO38	81545	ucsc.edu;bcgsc.ca	37	5	147784247	147784247	+	Splice_Site	SNP	G	G	T	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	69	7	61	0	0	0	0	0	0
ABLIM3	22885	ucsc.edu	37	5	148630937	148630937	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	49	5	76	0	17	17	0	0	0
FAXDC2	10826	ucsc.edu	37	5	154199893	154199893	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	23	4	20	0	20	20	0	0	0
CLINT1	9685	ucsc.edu	37	5	157214889	157214889	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	40	4	45	0	139	137	2	0	0
STC2	8614	bcgsc.ca	37	5	172744956	172744956	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	123	8	145	0	1	1	0	0	0
CDHR2	54825	ucsc.edu	37	5	176018219	176018219	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	42	4	45	0	0	0	0	0	0
DOK3	79930	ucsc.edu	37	5	176931453	176931453	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	43	4	37	1	11	11	0	0	0
MGAT4B	11282	ucsc.edu	37	5	179225382	179225382	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	28	4	51	0	365	364	0	0	1
CDYL	9425	bcgsc.ca	37	6	4935969	4935969	+	Silent	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	139	9	144	0	14	14	0	0	0
ACOT13	55856	ucsc.edu	37	6	24667519	24667519	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	51	5	50	0	55	55	0	0	0
BTN1A1	696	ucsc.edu	37	6	26509106	26509106	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	50	5	69	0	0	0	0	0	0
ZSCAN16	80345	ucsc.edu	37	6	28094668	28094668	+	Silent	SNP	G	G	T	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	32	4	40	0	2	2	0	0	0
OR2J2	26707	bcgsc.ca	37	6	29141861	29141861	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	368	17	442	0	0	0	0	0	0
HLA-J	3137	bcgsc.ca	37	6	29976917	29976917	+	RNA	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	111	7	140	1	5	5	0	0	0
TRIM15	89870	ucsc.edu	37	6	30131513	30131513	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	29	4	43	0	4	4	0	0	0
ATF6B	1388	bcgsc.ca	37	6	32093914	32093914	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	128	9	179	0	53	53	0	0	0
NOTCH4	4855	ucsc.edu	37	6	32171922	32171922	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	35	4	48	0	0	0	0	0	0
NOTCH4	4855	ucsc.edu	37	6	32190526	32190526	+	Silent	SNP	G	G	T	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	40	4	72	0	1	1	0	0	0
COL11A2	1302	ucsc.edu	37	6	33139351	33139351	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	26	4	55	0	0	0	0	0	0
COL11A2	1302	ucsc.edu;bcgsc.ca	37	6	33141305	33141305	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	58	6	95	0	0	0	0	0	0
SYNGAP1	8831	ucsc.edu	37	6	33408702	33408702	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	42	4	80	0	7	7	0	0	0
SPDEF	25803	ucsc.edu	37	6	34508800	34508800	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	42	6	41	0	0	0	0	0	0
SCUBE3	222663	bcgsc.ca	37	6	35213840	35213840	+	Missense_Mutation	SNP	C	C	A	rs142335824	alternate_allele	TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	177	8	261	0	0	0	0	0	0
MAPK14	1432	bcgsc.ca	37	6	36068011	36068011	+	Silent	SNP	C	C	A	rs201060351		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	208	10	267	4	9	9	0	0	0
MDGA1	266727	ucsc.edu	37	6	37612406	37612406	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	38	4	49	0	0	0	0	0	0
FRS3	10817	bcgsc.ca	37	6	41740590	41740590	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	101	7	138	1	6	6	0	0	0
GNMT	27232	ucsc.edu	37	6	42931125	42931125	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	24	4	37	0	0	0	0	0	0
PTK7	5754	broad.mit.edu	37	6	43112987	43112987	+	Silent	SNP	G	G	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	103	4	115	0	31	31	0	0	0
SLC22A7	10864	ucsc.edu	37	6	43270500	43270500	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	13	2	21	0	6	0	6	0	0
DLK2	65989	ucsc.edu	37	6	43419796	43419796	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	46	5	64	0	0	0	0	0	0
MAD2L1BP	9587	ucsc.edu	37	6	43607810	43607810	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	41	4	42	0	30	30	0	0	0
CENPQ	55166	ucsc.edu	37	6	49437949	49437949	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	39	4	41	0	1	1	0	0	0
TFAP2B	7021	ucsc.edu	37	6	50791410	50791410	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	22	4	50	0	0	0	0	0	0
ELOVL5	60481	ucsc.edu	37	6	53160468	53160468	+	Silent	SNP	G	G	T	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	25	4	34	0	31	31	0	0	0
BEND6	221336	bcgsc.ca	37	6	56846641	56846641	+	Silent	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	113	8	91	1	2	2	0	0	0
KCNQ5	56479	ucsc.edu	37	6	73834213	73834213	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	40	4	70	0	0	0	0	0	0
SLC17A5	26503	ucsc.edu	37	6	74310079	74310079	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	38	5	25	0	0	0	0	0	0
IBTK	25998	bcgsc.ca	37	6	82943876	82943876	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	96	8	123	1	0	0	0	0	0
UBE3D	90025	bcgsc.ca	37	6	83748154	83748154	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	85	8	120	0	3	3	0	0	0
UBE3D	90025	ucsc.edu	37	6	83767736	83767736	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	42	4	37	0	0	0	0	0	0
ANKRD6	22881	ucsc.edu	37	6	90333714	90333714	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	26	4	40	0	10	10	0	0	0
BEND3	57673	ucsc.edu	37	6	107392142	107392142	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	43	4	53	0	0	0	0	0	0
NT5DC1	221294	broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	116429548	116429548	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	71	10	77	0	36	30	6	0	0
FAM26D	221301	bcgsc.ca	37	6	116879198	116879198	+	Missense_Mutation	SNP	G	G	T	rs151332485	alternate_allele	TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	158	11	185	0	0	0	0	0	0
MCM9	254394	bcgsc.ca	37	6	119245169	119245169	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	275	13	370	0	2	2	0	0	0
STL	0	ucsc.edu	37	6	125233341	125233341	+	RNA	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	50	6	51	0	0	0	0	0	0
LAMA2	3908	ucsc.edu	37	6	129511447	129511447	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	49	6	47	0	0	0	0	0	0
SGK1	6446	ucsc.edu	37	6	134492212	134492212	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	51	5	51	0	656	656	0	0	0
SGK1	6446	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	134495704	134495704	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	51	7	70	0	303	253	50	0	0
BCLAF1	9774	ucsc.edu	37	6	136590751	136590751	+	Splice_Site	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	37	4	40	0	0	0	0	0	0
SLC35D3	340146	hgsc.bcm.edu	37	6	137245094	137245094	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	10	6	4	1	0	0	0	0	0
KIAA1244	57221	bcgsc.ca	37	6	138617994	138617994	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	176	10	193	0	2	2	0	0	0
PHACTR2	9749	ucsc.edu	37	6	144074894	144074894	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	30	4	29	0	0	0	0	0	0
STXBP5	134957	bcgsc.ca	37	6	147635449	147635449	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	117	8	140	1	3	3	0	0	0
WTAP	9589	ucsc.edu	37	6	160169381	160169381	+	Silent	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	40	6	39	1	82	82	0	0	0
RPS6KA2	6196	ucsc.edu	37	6	166923842	166923842	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	41	4	47	0	0	0	0	0	0
WDR27	253769	ucsc.edu	37	6	170052098	170052098	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	53	5	44	0	0	0	0	0	0
INTS1	26173	ucsc.edu	37	7	1513941	1513941	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	62	6	79	0	36	36	0	0	0
CARD11	84433	bcgsc.ca	37	7	2985453	2985453	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	250	12	308	1	0	0	0	0	0
SDK1	221935	ucsc.edu;bcgsc.ca	37	7	4050670	4050670	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	53	6	68	0	13	13	0	0	0
WIPI2	26100	bcgsc.ca	37	7	5270553	5270553	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	105	7	75	0	56	56	0	0	0
GLCCI1	113263	bcgsc.ca	37	7	8126022	8126022	+	Silent	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	366	13	501	2	5	5	0	0	0
SNX13	23161	ucsc.edu	37	7	17937005	17937005	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	43	4	40	0	10	10	0	0	0
RP9	6100	broad.mit.edu	37	7	33139017	33139017	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	123	5	135	1	13	13	0	0	0
BMPER	168667	bcgsc.ca	37	7	34125419	34125419	+	Missense_Mutation	SNP	C	C	A	rs115364786	byfrequency;alternate_allele	TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	80	8	58	0	0	0	0	0	0
ANLN	54443	bcgsc.ca	37	7	36463518	36463518	+	Missense_Mutation	SNP	G	G	T	rs199943918		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	110	8	66	0	1	1	0	0	0
HECW1	23072	ucsc.edu;bcgsc.ca	37	7	43447254	43447254	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	51	7	58	0	1	1	0	0	0
PKD1L1	168507	bcgsc.ca	37	7	47894769	47894769	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	126	9	125	0	0	0	0	0	0
ABCA13	154664	ucsc.edu	37	7	48626757	48626757	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	27	4	42	0	0	0	0	0	0
POM121	9883	bcgsc.ca	37	7	72409183	72409183	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	330	13	336	0	73	72	0	1	0
HIP1	3092	ucsc.edu	37	7	75210553	75210553	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	36	4	26	0	0	0	0	0	0
ZNF804B	219578	ucsc.edu	37	7	88962752	88962752	+	Silent	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	36	4	28	0	0	0	0	0	0
ANKIB1	54467	ucsc.edu	37	7	91980314	91980314	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	31	5	31	0	40	40	0	0	0
ZAN	7455	ucsc.edu;bcgsc.ca	37	7	100348286	100348286	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	39	6	36	0	0	0	0	0	0
SRRT	51593	ucsc.edu	37	7	100483872	100483872	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	42	4	65	0	0	0	0	0	0
CUX1	1523	ucsc.edu	37	7	101926023	101926023	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	39	4	53	1	142	142	0	0	0
LHFPL3	375612	ucsc.edu	37	7	104377155	104377155	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	41	4	36	1	0	0	0	0	0
MLL5	55904	bcgsc.ca	37	7	104747053	104747053	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	204	9	204	0	23	23	0	0	0
MLL5	55904	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	104748161	104748161	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	65	22	54	0	17	8	9	0	0
SLC26A3	1811	ucsc.edu	37	7	107431532	107431532	+	Silent	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	51	5	42	0	0	0	0	0	0
CADPS2	93664	ucsc.edu	37	7	122019487	122019487	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	40	4	34	0	0	0	0	0	0
CPA1	1357	bcgsc.ca	37	7	130021986	130021986	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	100	8	90	0	0	0	0	0	0
KIAA1549	57670	ucsc.edu	37	7	138601771	138601771	+	Silent	SNP	G	G	T	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	31	4	25	0	6	6	0	0	0
TTC26	79989	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	138822639	138822639	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	110	7	82	0	12	11	1	0	0
TRPV6	55503	bcgsc.ca	37	7	142569678	142569678	+	Silent	SNP	G	G	T	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	164	8	161	0	0	0	0	0	0
ZNF212	7988	bcgsc.ca	37	7	148947867	148947867	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	116	8	141	0	5	5	0	0	0
ZNF783	0	ucsc.edu	37	7	148964220	148964220	+	Silent	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	52	5	60	0	5	5	0	0	0
SSPO	23145	ucsc.edu	37	7	149500901	149500901	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	47	5	42	0	0	0	0	0	0
ZNF862	643641	ucsc.edu	37	7	149545316	149545316	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	42	4	41	0	7	7	0	0	0
NOS3	4846	ucsc.edu	37	7	150707717	150707717	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	22	4	19	0	1	1	0	0	0
SMARCD3	6604	ucsc.edu	37	7	150937325	150937325	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	41	5	67	1	3	3	0	0	0
MLL3	58508	bcgsc.ca	37	7	151874538	151874538	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	136	8	113	0	20	20	0	0	0
MYOM2	9172	ucsc.edu	37	8	2024234	2024234	+	Silent	SNP	G	G	T	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	21	4	34	0	0	0	0	0	0
CSMD1	64478	ucsc.edu	37	8	3141815	3141815	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	32	5	72	0	0	0	0	0	0
SGK223	0	ucsc.edu	37	8	8235183	8235183	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	39	5	60	0	4	4	0	0	0
DEFB136	613210	bcgsc.ca	37	8	11831556	11831556	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	248	10	296	2	0	0	0	0	0
CHRNA2	1135	ucsc.edu	37	8	27328546	27328546	+	Silent	SNP	G	G	T	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	54	6	71	0	0	0	0	0	0
KIF13B	23303	ucsc.edu	37	8	28984011	28984011	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	24	4	17	0	0	0	0	0	0
UNC5D	137970	ucsc.edu	37	8	35541166	35541166	+	Silent	SNP	G	G	T	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	51	5	61	2	6	6	0	0	0
ASH2L	9070	ucsc.edu	37	8	37991055	37991055	+	Silent	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	40	4	56	0	0	0	0	0	0
FGFR1	2260	bcgsc.ca	37	8	38282115	38282115	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	155	9	187	0	14	14	0	0	0
AGPAT6	137964	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	41467379	41467379	+	Silent	SNP	C	C	T	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	124	30	150	0	45	34	10	1	0
SDR16C5	195814	ucsc.edu	37	8	57228812	57228812	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	38	4	65	0	0	0	0	0	0
ASPH	444	bcgsc.ca	37	8	62596721	62596721	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	88	7	89	0	52	52	0	0	0
C8orf44	56260	ucsc.edu	37	8	67592144	67592144	+	Silent	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	39	4	60	0	0	0	0	0	0
TERF1	7013	ucsc.edu	37	8	73932953	73932953	+	Silent	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	45	4	23	0	5	5	0	0	0
PAG1	55824	bcgsc.ca	37	8	81892689	81892689	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	83	7	67	0	6	6	0	0	0
CNBD1	168975	ucsc.edu	37	8	88296946	88296946	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	27	4	32	0	0	0	0	0	0
VPS13B	157680	bcgsc.ca	37	8	100533188	100533188	+	Silent	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	212	11	200	1	6	6	0	0	0
NACAP1	83955	bcgsc.ca	37	8	102381423	102381423	+	RNA	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	141	8	216	0	1	1	0	0	0
DPYS	1807	ucsc.edu	37	8	105463571	105463571	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	61	6	60	0	6	6	0	0	0
CSMD3	114788	ucsc.edu	37	8	113678596	113678596	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	33	4	27	0	0	0	0	0	0
TRIB1	10221	bcgsc.ca	37	8	126448584	126448584	+	Silent	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	108	7	159	2	49	49	0	0	0
KCNQ3	3786	ucsc.edu	37	8	133144503	133144503	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	40	5	65	0	0	0	0	0	0
GPR20	2843	ucsc.edu	37	8	142366994	142366994	+	Missense_Mutation	SNP	C	C	A	rs79164234	alternate_allele	TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	38	5	49	0	1	1	0	0	0
MROH6	642475	ucsc.edu	37	8	144650343	144650343	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	24	4	24	0	11	11	0	0	0
FOXH1	8928	ucsc.edu	37	8	145700319	145700319	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	20	4	21	0	0	0	0	0	0
DOCK8	81704	ucsc.edu	37	9	317093	317093	+	Silent	SNP	G	G	T	rs141674633	alternate_allele	TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	40	4	48	0	18	18	0	0	0
CDC37L1	55664	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	4706079	4706079	+	Silent	SNP	A	A	G	rs200977934	alternate_allele	TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	46	6	50	0	14	11	3	0	0
MPDZ	8777	ucsc.edu	37	9	13193198	13193198	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	32	5	66	0	6	6	0	0	0
FREM1	158326	ucsc.edu	37	9	14746937	14746937	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	38	4	44	0	4	4	0	0	0
FREM1	158326	ucsc.edu	37	9	14784504	14784504	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	51	5	70	0	5	5	0	0	0
LOC389705	0	ucsc.edu;bcgsc.ca	37	9	14997253	14997253	+	RNA	SNP	T	T	C	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	28	6	23	0	0	0	0	0	0
NFX1	4799	ucsc.edu;bcgsc.ca	37	9	33295194	33295194	+	Silent	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	60	7	106	0	23	23	0	0	0
NOL6	65083	ucsc.edu	37	9	33467712	33467712	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	43	4	69	0	10	10	0	0	0
CNTFR	1271	ucsc.edu	37	9	34552681	34552681	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	38	4	61	0	0	0	0	0	0
TESK1	7016	bcgsc.ca	37	9	35607970	35607970	+	Silent	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	100	8	143	0	46	46	0	0	0
CREB3	10488	ucsc.edu	37	9	35733117	35733117	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	67	7	67	1	48	47	0	1	0
RGP1	9827	ucsc.edu	37	9	35750258	35750258	+	Silent	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	35	4	61	0	12	12	0	0	0
RNF38	152006	ucsc.edu	37	9	36339762	36339762	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	33	4	29	0	16	16	0	0	0
SPATA31D1	389763	ucsc.edu	37	9	84609758	84609758	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	49	6	91	0	0	0	0	0	0
ROR2	4920	ucsc.edu	37	9	94538053	94538053	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	49	5	63	0	0	0	0	0	0
OGN	4969	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	9	95148550	95148550	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	50	16	55	0	0	0	0	0	0
CCDC180	0	ucsc.edu	37	9	100087364	100087364	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	51	5	101	0	1	1	0	0	0
SEC61B	10952	ucsc.edu;bcgsc.ca	37	9	101990197	101990197	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	50	6	53	0	189	189	0	0	0
LPPR1	0	bcgsc.ca	37	9	104079716	104079716	+	Missense_Mutation	SNP	C	C	A	rs200604503	alternate_allele	TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	234	10	357	0	0	0	0	0	0
ZNF462	58499	ucsc.edu	37	9	109687283	109687283	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	34	4	56	0	2	2	0	0	0
ZNF462	58499	ucsc.edu	37	9	109691727	109691727	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	65	6	96	0	10	10	0	0	0
ZNF462	58499	bcgsc.ca	37	9	109765603	109765603	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	138	8	172	0	10	10	0	0	0
SVEP1	79987	ucsc.edu	37	9	113276263	113276263	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	16	4	26	0	2	2	0	0	0
MUSK	4593	bcgsc.ca	37	9	113562828	113562828	+	Silent	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	224	10	321	0	0	0	0	0	0
C9orf84	158401	ucsc.edu;bcgsc.ca	37	9	114543246	114543246	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	49	6	62	0	0	0	0	0	0
HSDL2	84263	ucsc.edu	37	9	115200731	115200731	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	42	4	63	0	57	57	0	0	0
KIAA1958	158405	bcgsc.ca	37	9	115421590	115421590	+	Silent	SNP	C	C	A	rs151231750	byfrequency;alternate_allele	TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	96	7	99	0	7	7	0	0	0
ALAD	210	ucsc.edu;bcgsc.ca	37	9	116151936	116151936	+	Silent	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	43	7	48	0	30	30	0	0	0
PHF19	26147	bcgsc.ca	37	9	123629214	123629214	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	102	8	104	1	2	2	0	0	0
GSN	2934	bcgsc.ca	37	9	124064369	124064369	+	Silent	SNP	G	G	T	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	149	9	200	1	163	163	0	0	0
OR1N1	138883	ucsc.edu	37	9	125288877	125288877	+	Silent	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	55	6	60	1	0	0	0	0	0
OLFML2A	169611	bcgsc.ca	37	9	127563858	127563858	+	Missense_Mutation	SNP	C	C	A	rs199848350	alternate_allele	TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	46	6	81	0	3	3	0	0	0
LMX1B	4010	ucsc.edu	37	9	129453227	129453227	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	39	4	41	0	0	0	0	0	0
LRSAM1	90678	ucsc.edu	37	9	130258249	130258249	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	39	4	36	0	0	0	0	0	0
STXBP1	6812	ucsc.edu	37	9	130413927	130413927	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	42	5	38	0	0	0	0	0	0
TOR2A	27433	ucsc.edu	37	9	130494938	130494938	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	4	1	12	0	19	16	3	0	0
PTGES2	80142	ucsc.edu	37	9	130883516	130883516	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	17	4	14	0	0	0	0	0	0
GOLGA2	2801	ucsc.edu	37	9	131027898	131027898	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	33	4	47	0	31	31	0	0	0
SLC27A4	10999	ucsc.edu	37	9	131107450	131107450	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	41	4	51	2	17	17	0	0	0
SLC27A4	10999	ucsc.edu	37	9	131112839	131112839	+	Missense_Mutation	SNP	C	C	A	rs191620324	by1000genomes;alternate_allele	TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	27	4	21	0	30	30	0	0	0
ODF2	4957	bcgsc.ca	37	9	131262517	131262517	+	Silent	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	164	10	269	3	10	10	0	0	0
C9orf106	414318	ucsc.edu	37	9	132084472	132084472	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	53	6	64	0	0	0	0	0	0
LAMC3	10319	ucsc.edu	37	9	133936531	133936531	+	Silent	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	39	4	76	0	3	3	0	0	0
NTNG2	84628	ucsc.edu	37	9	135102347	135102347	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	33	4	41	0	0	0	0	0	0
GFI1B	8328	ucsc.edu	37	9	135863736	135863736	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	37	4	97	0	0	0	0	0	0
ADAMTS13	11093	ucsc.edu;bcgsc.ca	37	9	136290671	136290671	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	26	5	39	0	1	1	0	0	0
CACFD1	11094	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	136333115	136333115	+	Silent	SNP	G	G	A	rs150411088		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	59	16	68	0	19	8	11	0	0
COL5A1	1289	bcgsc.ca	37	9	137664643	137664643	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	107	8	143	1	0	0	0	0	0
PPP1R26	9858	bcgsc.ca	37	9	138376740	138376740	+	Silent	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	117	7	158	1	27	27	0	0	0
SOHLH1	402381	ucsc.edu	37	9	138588480	138588480	+	Silent	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	36	4	65	0	0	0	0	0	0
SLC34A3	142680	ucsc.edu	37	9	140130534	140130534	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	49	5	72	0	1	1	0	0	0
EXD3	54932	ucsc.edu;bcgsc.ca	37	9	140201514	140201514	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	33	6	44	0	2	2	0	0	0
PNPLA7	375775	ucsc.edu	37	9	140396157	140396157	+	Missense_Mutation	SNP	C	C	A	rs147523012	alternate_allele	TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	38	4	53	0	1	1	0	0	0
ARRDC1	92714	ucsc.edu	37	9	140507361	140507361	+	Silent	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	37	4	48	0	36	36	0	0	0
TLR7	51284	ucsc.edu	37	X	12905453	12905453	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	43	4	79	0	11	11	0	0	0
SMS	6611	ucsc.edu	37	X	21996164	21996164	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	51	7	75	0	192	191	0	0	1
ACOT9	23597	ucsc.edu	37	X	23722056	23722056	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	49	5	58	0	45	45	0	0	0
DCAF8L1	139425	ucsc.edu	37	X	27998020	27998020	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	22	5	34	0	0	0	0	0	0
DMD	1756	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	31152282	31152282	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	39	13	59	0	7	4	3	0	0
DMD	1756	ucsc.edu	37	X	32360316	32360316	+	Silent	SNP	G	G	T	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	31	4	37	0	0	0	0	0	0
MID1IP1	58526	ucsc.edu;bcgsc.ca	37	X	38664656	38664656	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	21	5	26	0	111	111	0	0	0
BCOR	54880	ucsc.edu	37	X	39930265	39930265	+	Missense_Mutation	SNP	G	G	T	rs138675866	alternate_allele	TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	84	8	74	1	14	14	0	0	0
GPR34	2857	ucsc.edu	37	X	41554943	41554943	+	Silent	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	41	5	44	0	84	84	0	0	0
USP11	8237	ucsc.edu	37	X	47104816	47104816	+	Silent	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	23	5	22	0	42	42	0	0	0
USP11	8237	ucsc.edu	37	X	47107073	47107073	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	40	4	57	0	79	79	0	0	0
EBP	10682	ucsc.edu	37	X	48385411	48385411	+	Silent	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	41	4	80	0	0	0	0	0	0
FOXP3	50943	ucsc.edu	37	X	49113922	49113922	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	21	4	24	0	0	0	0	0	0
GNL3L	54552	ucsc.edu	37	X	54569459	54569459	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	24	4	23	0	0	0	0	0	0
KLF8	11279	ucsc.edu	37	X	56292171	56292171	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	26	5	33	0	0	0	0	0	0
HEPH	9843	ucsc.edu	37	X	65411982	65411982	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	32	4	47	0	0	0	0	0	0
ARR3	407	ucsc.edu	37	X	69496297	69496297	+	Silent	SNP	G	G	T	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	34	4	38	0	0	0	0	0	0
TAF1	6872	ucsc.edu	37	X	70674085	70674085	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	24	4	35	0	0	0	0	0	0
ACRC	93953	bcgsc.ca	37	X	70823664	70823664	+	Silent	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	167	8	178	2	0	0	0	0	0
UPRT	139596	ucsc.edu	37	X	74516241	74516241	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	41	4	64	0	0	0	0	0	0
ATRX	546	ucsc.edu	37	X	76845317	76845317	+	Silent	SNP	G	G	T	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	39	4	33	0	9	9	0	0	0
ZNF711	7552	ucsc.edu	37	X	84520178	84520178	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	41	4	26	0	2	2	0	0	0
DACH2	117154	ucsc.edu	37	X	85404021	85404021	+	Missense_Mutation	SNP	G	G	T	rs201644507	alternate_allele	TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	42	4	57	0	0	0	0	0	0
PCDH19	57526	ucsc.edu	37	X	99657776	99657776	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	40	4	34	0	0	0	0	0	0
RAB9B	51209	ucsc.edu	37	X	103080490	103080490	+	Silent	SNP	G	G	T	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	33	4	44	0	1	1	0	0	0
SERPINA7	6906	bcgsc.ca	37	X	105279119	105279119	+	Missense_Mutation	SNP	G	G	T	rs182605024	by1000genomes;alternate_allele	TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	205	10	204	1	0	0	0	0	0
MUM1L1	139221	ucsc.edu	37	X	105451280	105451280	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	12	4	14	0	4	4	0	0	0
GLUD2	2747	ucsc.edu	37	X	120182436	120182436	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	92	1	109	0	150	1	149	0	0
HPRT1	3251	ucsc.edu	37	X	133609215	133609215	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	25	4	46	0	0	0	0	0	0
CXorf48	54967	ucsc.edu	37	X	134294442	134294442	+	Silent	SNP	G	G	T	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	42	5	27	0	0	0	0	0	0
LAGE3	8270	ucsc.edu	37	X	153706714	153706714	+	Silent	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	43	4	58	0	14	14	0	0	0
F8	2157	ucsc.edu	37	X	154066017	154066017	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	26	4	32	0	0	0	0	0	0
F8	2157	ucsc.edu	37	X	154159474	154159474	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	35	5	38	0	0	0	0	0	0
CYP4F2	8529	broad.mit.edu;bcgsc.ca	37	19	16003152	16003153	+	Frame_Shift_Ins	INS	-	-	ATAT	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	186	22	258	0	0	0	0	0	0
MIA	8190	ucsc.edu	37	19	41282923	41282924	+	Missense_Mutation	DNP	CC	CC	AA	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	CC	CC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	37	4	65	2	0	0	0	0	0
