Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	TTotCov	TVarCov	NTotCov	NVarCov	Trna_tot	Trna_ref	Trna_var	Trna_alt1	Trna_alt2
PLEKHN1	84069	ucsc.edu	37	1	907465	907465	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	68	7	101	0	1	1	0	0	0
TTLL10	254173	ucsc.edu	37	1	1120509	1120509	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	42	4	46	0	0	0	0	0	0
CCNL2	81669	ucsc.edu	37	1	1323220	1323220	+	Missense_Mutation	SNP	C	C	A	rs141555700	alternate_allele	TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	45	5	50	0	60	60	0	0	0
KIAA1751	85452	ucsc.edu;bcgsc.ca	37	1	1904424	1904424	+	Missense_Mutation	SNP	C	C	A	rs200452181	alternate_allele	TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	38	6	54	0	0	0	0	0	0
PRKCZ	5590	ucsc.edu	37	1	2066717	2066717	+	Silent	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	50	5	80	0	35	35	0	0	0
MEGF6	1953	ucsc.edu	37	1	3418388	3418388	+	Silent	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	31	4	46	0	13	13	0	0	0
CEP104	9731	ucsc.edu	37	1	3732022	3732022	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	39	4	40	0	54	53	1	0	0
CHD5	26038	ucsc.edu	37	1	6188974	6188974	+	Silent	SNP	C	C	A	rs139842525	alternate_allele	TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	64	6	74	1	0	0	0	0	0
ACOT7	11332	ucsc.edu	37	1	6324672	6324672	+	Silent	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	28	4	38	0	40	40	0	0	0
SLC45A1	50651	ucsc.edu	37	1	8390576	8390576	+	Silent	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	35	4	49	0	1	1	0	0	0
ENO1	2023	bcgsc.ca	37	1	8925417	8925417	+	Silent	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	103	8	101	0	8117	8100	3	10	4
CASZ1	54897	ucsc.edu	37	1	10703326	10703326	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	44	5	67	0	6	6	0	0	0
PTCHD2	57540	ucsc.edu	37	1	11562817	11562817	+	Silent	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	39	4	68	0	2	2	0	0	0
PTCHD2	57540	ucsc.edu	37	1	11595082	11595082	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	25	4	15	0	0	0	0	0	0
KIAA2013	90231	ucsc.edu	37	1	11982761	11982761	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	29	4	45	0	155	154	0	1	0
PRDM2	7799	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	14068533	14068533	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	65	35	76	0	4	1	3	0	0
TMEM51	55092	ucsc.edu	37	1	15545873	15545873	+	Silent	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	67	7	89	0	104	104	0	0	0
CELA2A	63036	ucsc.edu	37	1	15783623	15783623	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	54	5	99	1	0	0	0	0	0
CASP9	842	ucsc.edu	37	1	15831145	15831145	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	41	4	76	0	18	18	0	0	0
AGMAT	79814	ucsc.edu	37	1	15904351	15904351	+	Silent	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	33	4	45	0	0	0	0	0	0
TMEM82	388595	ucsc.edu	37	1	16071026	16071026	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	40	4	37	0	101	101	0	0	0
SDHB	6390	ucsc.edu	37	1	17350503	17350503	+	Nonsense_Mutation	SNP	C	C	A	rs201517260	alternate_allele	TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	55	5	61	0	223	222	0	0	1
PADI4	23569	ucsc.edu	37	1	17681179	17681179	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	28	4	53	0	0	0	0	0	0
PADI6	353238	ucsc.edu	37	1	17720808	17720808	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	34	4	37	0	0	0	0	0	0
UBR4	23352	bcgsc.ca	37	1	19426979	19426979	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	163	9	141	0	78	78	0	0	0
UBR4	23352	ucsc.edu	37	1	19495972	19495972	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	47	6	35	0	8	8	0	0	0
NBPF3	84224	bcgsc.ca	37	1	21799979	21799979	+	Missense_Mutation	SNP	G	G	T	rs141340113	byfrequency;alternate_allele	TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	269	11	337	1	14	14	0	0	0
TCEB3	6924	bcgsc.ca	37	1	24078344	24078344	+	Silent	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	307	13	298	1	21	21	0	0	0
CNR2	1269	ucsc.edu	37	1	24201598	24201598	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	53	5	66	0	0	0	0	0	0
CATSPER4	378807	ucsc.edu	37	1	26517795	26517795	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	39	4	50	0	0	0	0	0	0
RPS6KA1	6195	bcgsc.ca	37	1	26899813	26899813	+	Silent	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	120	11	195	0	146	146	0	0	0
GPN2	54707	bcgsc.ca	37	1	27215512	27215512	+	Silent	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	247	14	320	0	37	37	0	0	0
STX12	23673	ucsc.edu	37	1	28136756	28136756	+	Splice_Site	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	39	4	26	0	0	0	0	0	0
THEMIS2	9473	ucsc.edu	37	1	28208986	28208986	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	31	4	58	0	22	22	0	0	0
RCC1	1104	ucsc.edu	37	1	28857039	28857039	+	Silent	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	24	4	45	0	1	1	0	0	0
SNHG12	85028	ucsc.edu	37	1	28907328	28907328	+	RNA	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	39	4	52	0	2	2	0	0	0
OPRD1	4985	ucsc.edu	37	1	29189548	29189548	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	23	4	19	0	0	0	0	0	0
COL16A1	1307	ucsc.edu	37	1	32133809	32133809	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	39	4	78	0	0	0	0	0	0
KIAA1522	57648	ucsc.edu	37	1	33236012	33236012	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	39	4	32	0	117	117	0	0	0
PHC2	1912	bcgsc.ca	37	1	33797050	33797050	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	211	11	289	1	268	268	0	0	0
GJA4	2701	ucsc.edu	37	1	35260285	35260285	+	Silent	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	44	5	42	0	0	0	0	0	0
AGO1	26523	bcgsc.ca	37	1	36367166	36367166	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	160	11	156	0	9	9	0	0	0
GNL2	29889	ucsc.edu	37	1	38040016	38040016	+	Silent	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	33	4	44	0	92	91	0	1	0
KIAA0754	643314	ucsc.edu	37	1	39875952	39875952	+	Silent	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	50	5	59	1	14	14	0	0	0
MACF1	23499	ucsc.edu	37	1	39895720	39895720	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	60	6	64	0	53	52	0	0	1
TRIT1	54802	ucsc.edu	37	1	40315797	40315797	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	56	6	63	0	2	2	0	0	0
ZMYND12	84217	ucsc.edu	37	1	42921652	42921652	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	42	4	49	0	5	5	0	0	0
EBNA1BP2	10969	bcgsc.ca	37	1	43637245	43637245	+	Silent	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	226	13	270	2	189	189	0	0	0
SZT2	23334	ucsc.edu	37	1	43886419	43886419	+	Splice_Site	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	41	4	66	0	0	0	0	0	0
SZT2	23334	ucsc.edu	37	1	43908022	43908022	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	38	4	72	0	7	7	0	0	0
IPO13	9670	ucsc.edu	37	1	44422086	44422086	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	41	4	56	0	36	36	0	0	0
KLF17	128209	bcgsc.ca	37	1	44595271	44595271	+	Silent	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	211	12	238	1	0	0	0	0	0
KIF2C	11004	ucsc.edu	37	1	45206648	45206648	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	36	4	31	0	2	2	0	0	0
MUTYH	4595	ucsc.edu	37	1	45798128	45798128	+	Silent	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	35	5	37	0	27	27	0	0	0
AKR1A1	10327	ucsc.edu	37	1	46035570	46035570	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	44	4	78	0	1	1	0	0	0
FAF1	11124	ucsc.edu	37	1	51171560	51171560	+	Silent	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	39	4	41	0	0	0	0	0	0
EPS15	2060	ucsc.edu	37	1	51860120	51860120	+	Splice_Site	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	36	4	29	0	0	0	0	0	0
TXNDC12	51060	ucsc.edu	37	1	52520712	52520712	+	Silent	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	42	4	70	0	62	60	1	1	0
SLC1A7	6512	ucsc.edu	37	1	53559203	53559203	+	Missense_Mutation	SNP	C	C	A	rs145709346	alternate_allele	TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	26	4	42	1	0	0	0	0	0
ATG4C	84938	ucsc.edu	37	1	63307215	63307215	+	Silent	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	41	4	32	1	0	0	0	0	0
ITGB3BP	23421	ucsc.edu	37	1	63920061	63920061	+	Silent	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	36	4	29	0	0	0	0	0	0
IL12RB2	3595	ucsc.edu	37	1	67861346	67861346	+	Silent	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	59	7	106	0	27	27	0	0	0
NEXN	91624	ucsc.edu	37	1	78381807	78381807	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	38	5	24	0	0	0	0	0	0
SYDE2	84144	ucsc.edu	37	1	85648161	85648161	+	Silent	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	53	5	40	0	6	6	0	0	0
ABCA4	24	ucsc.edu	37	1	94495158	94495158	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	44	7	60	0	0	0	0	0	0
PALMD	54873	ucsc.edu	37	1	100155255	100155255	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	35	5	63	0	19	19	0	0	0
PRPF38B	55119	ucsc.edu	37	1	109242041	109242041	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	37	4	58	0	73	73	0	0	0
RBM15	64783	ucsc.edu	37	1	110882226	110882226	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	49	7	76	0	8	8	0	0	0
AP4B1	10717	ucsc.edu	37	1	114445278	114445278	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	44	7	53	1	8	8	0	0	0
NOTCH2	4853	ucsc.edu	37	1	120459289	120459289	+	Missense_Mutation	SNP	C	C	A	rs201446896	alternate_allele	TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	48	5	58	0	121	120	1	0	0
NOTCH2	4853	ucsc.edu	37	1	120459314	120459314	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	35	4	51	0	0	0	0	0	0
PDIA3P	171423	ucsc.edu	37	1	146651176	146651176	+	RNA	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	37	4	33	0	9	9	0	0	0
SF3B4	10262	ucsc.edu	37	1	149897877	149897877	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	35	4	30	0	153	152	0	1	0
RPRD2	23248	ucsc.edu	37	1	150443549	150443549	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	44	4	67	2	55	55	0	0	0
RPRD2	23248	ucsc.edu	37	1	150443656	150443656	+	Silent	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	38	4	77	0	32	32	0	0	0
CTSS	1520	ucsc.edu	37	1	150722648	150722648	+	Splice_Site	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	49	6	25	0	0	0	0	0	0
CDC42SE1	56882	ucsc.edu	37	1	151028158	151028158	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	29	4	30	0	7	7	0	0	0
SLC27A3	11000	ucsc.edu	37	1	153751267	153751267	+	Silent	SNP	C	C	A	rs138614386	alternate_allele	TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	55	6	58	0	51	50	0	1	0
PMVK	10654	ucsc.edu	37	1	154909154	154909154	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	15	4	29	0	76	76	0	0	0
EFNA3	1944	ucsc.edu	37	1	155058416	155058416	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	12	4	23	0	0	0	0	0	0
MTX1	4580	ucsc.edu	37	1	155182010	155182010	+	Silent	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	36	4	31	0	0	0	0	0	0
SCAMP3	10067	ucsc.edu	37	1	155226564	155226564	+	Silent	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	42	6	55	0	163	163	0	0	0
IQGAP3	128239	ucsc.edu	37	1	156539181	156539181	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	32	4	44	0	0	0	0	0	0
TTC24	164118	ucsc.edu	37	1	156555750	156555750	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	16	4	14	0	0	0	0	0	0
INSRR	3645	broad.mit.edu	37	1	156818724	156818724	+	Silent	SNP	G	G	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	8	3	14	0	0	0	0	0	0
ARHGEF11	9826	ucsc.edu	37	1	156950258	156950258	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	22	4	16	0	26	26	0	0	0
COPA	1314	ucsc.edu	37	1	160281658	160281658	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	35	4	27	0	0	0	0	0	0
VANGL2	57216	ucsc.edu	37	1	160385927	160385927	+	Silent	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	58	6	89	0	4	4	0	0	0
CD244	51744	ucsc.edu	37	1	160805987	160805987	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	39	4	62	0	0	0	0	0	0
F11R	50848	ucsc.edu	37	1	160968875	160968875	+	Silent	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	42	4	56	0	0	0	0	0	0
FCRLB	127943	ucsc.edu	37	1	161695810	161695810	+	Silent	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	41	4	48	0	2	2	0	0	0
C1orf226	400793	ucsc.edu	37	1	162353017	162353017	+	Silent	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	49	5	81	0	3	3	0	0	0
DUSP27	92235	ucsc.edu	37	1	167096706	167096706	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	37	4	79	0	0	0	0	0	0
MPC2	25874	ucsc.edu	37	1	167889832	167889832	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	34	4	41	0	378	378	0	0	0
C1orf112	55732	ucsc.edu	37	1	169819406	169819406	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	33	4	21	0	5	5	0	0	0
PRRC2C	23215	ucsc.edu	37	1	171494081	171494081	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	40	6	37	0	59	59	0	0	0
PRRC2C	23215	ucsc.edu	37	1	171553642	171553642	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	20	4	17	0	103	103	0	0	0
SUCO	51430	ucsc.edu	37	1	172501711	172501711	+	Silent	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	37	4	40	0	0	0	0	0	0
GAS5	60674	ucsc.edu	37	1	173835872	173835872	+	RNA	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	53	5	38	0	2	2	0	0	0
FAM5B	57795	ucsc.edu	37	1	177249757	177249757	+	Missense_Mutation	SNP	C	C	A	rs143438287	alternate_allele	TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	55	6	50	0	0	0	0	0	0
CEP350	9857	ucsc.edu	37	1	179965876	179965876	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	38	4	30	0	0	0	0	0	0
CEP350	9857	ucsc.edu	37	1	180031394	180031394	+	Silent	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	37	4	15	0	6	6	0	0	0
IVNS1ABP	10625	ucsc.edu	37	1	185269245	185269245	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	40	5	34	0	593	593	0	0	0
HMCN1	83872	ucsc.edu	37	1	186057396	186057396	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	41	4	28	0	0	0	0	0	0
CRB1	23418	ucsc.edu	37	1	197297791	197297791	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	58	6	59	0	1	1	0	0	0
KIF21B	23046	ucsc.edu	37	1	200944786	200944786	+	Silent	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	36	4	32	0	0	0	0	0	0
LAD1	3898	ucsc.edu	37	1	201356214	201356214	+	Missense_Mutation	SNP	C	C	A	rs201050623	alternate_allele	TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	38	5	50	0	1	1	0	0	0
OPTC	26254	ucsc.edu	37	1	203465361	203465361	+	Silent	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	38	4	59	0	0	0	0	0	0
ZC3H11A	9877	ucsc.edu	37	1	203800889	203800889	+	Silent	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	38	4	47	0	0	0	0	0	0
LRRN2	10446	ucsc.edu	37	1	204587188	204587188	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	42	4	59	0	0	0	0	0	0
CD34	947	ucsc.edu	37	1	208061204	208061204	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	41	4	76	0	30	30	0	0	0
PLXNA2	5362	ucsc.edu	37	1	208206777	208206777	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	37	4	70	0	10	10	0	0	0
MIR205HG	642587	ucsc.edu	37	1	209602719	209602719	+	Missense_Mutation	SNP	C	C	A	rs111328726	byfrequency;by1000genomes;alternate_allele	TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	26	4	31	0	0	0	0	0	0
CAMK1G	57172	ucsc.edu	37	1	209784885	209784885	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	24	4	37	0	0	0	0	0	0
G0S2	50486	ucsc.edu	37	1	209849315	209849315	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	38	4	68	0	26	26	0	0	0
IRF6	3664	ucsc.edu	37	1	209965732	209965732	+	Silent	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	53	6	62	0	15	15	0	0	0
DIEXF	27042	ucsc.edu	37	1	210015997	210015997	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	58	6	64	0	17	17	0	0	0
SYT14	255928	ucsc.edu	37	1	210194391	210194391	+	Silent	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	37	4	28	0	0	0	0	0	0
NEK2	4751	broad.mit.edu	37	1	211843673	211843673	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	218	5	200	0	2	2	0	0	0
HLX	3142	ucsc.edu	37	1	221057808	221057808	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	41	4	73	0	1	1	0	0	0
NVL	4931	ucsc.edu	37	1	224491560	224491560	+	Splice_Site	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	26	4	43	0	0	0	0	0	0
TMEM63A	9725	ucsc.edu	37	1	226065129	226065129	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	50	5	57	0	58	58	0	0	0
LIN9	286826	ucsc.edu	37	1	226455674	226455674	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	35	4	25	0	5	5	0	0	0
JMJD4	65094	ucsc.edu	37	1	227921240	227921240	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	42	4	55	0	25	25	0	0	0
OBSCN	84033	ucsc.edu	37	1	228471283	228471283	+	Silent	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	31	4	57	0	0	0	0	0	0
HEATR1	55127	ucsc.edu	37	1	236729958	236729958	+	Silent	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	31	4	26	0	0	0	0	0	0
ZMYND11	10771	ucsc.edu	37	10	282813	282813	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	54	6	49	0	42	42	0	0	0
DIP2C	22982	ucsc.edu	37	10	486818	486818	+	Silent	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	43	4	60	0	0	0	0	0	0
ITGA8	8516	ucsc.edu	37	10	15648406	15648406	+	Silent	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	36	4	47	0	0	0	0	0	0
CUBN	8029	ucsc.edu	37	10	16962080	16962080	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	38	5	42	0	4	4	0	0	0
ENKUR	219670	ucsc.edu	37	10	25288332	25288332	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	30	4	52	0	0	0	0	0	0
RSU1P2	100133308	ucsc.edu	37	10	45642914	45642914	+	RNA	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	37	6	35	0	0	0	0	0	0
OGDHL	55753	ucsc.edu	37	10	50944567	50944567	+	Splice_Site	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	47	6	64	0	5	5	0	0	0
PCDH15	65217	broad.mit.edu;ucsc.edu	37	10	55568839	55568839	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	27	13	29	0	0	0	0	0	0
ZNF365	22891	ucsc.edu	37	10	64415146	64415146	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	53	5	51	0	0	0	0	0	0
HK1	3098	ucsc.edu	37	10	71148970	71148970	+	Silent	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	35	4	43	0	69	68	0	1	0
UNC5B	219699	ucsc.edu	37	10	73051569	73051569	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	36	4	44	0	0	0	0	0	0
VCL	7414	ucsc.edu	37	10	75877915	75877915	+	Silent	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	51	6	66	0	108	108	0	0	0
AP3M1	26985	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	10	75898090	75898090	+	Silent	SNP	T	T	C	rs147488745	alternate_allele	TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	93	50	71	0	14	4	10	0	0
NRG3	10718	ucsc.edu	37	10	84738732	84738732	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	41	4	46	0	0	0	0	0	0
RGR	5995	ucsc.edu	37	10	86018364	86018364	+	Missense_Mutation	SNP	C	C	A	rs200927654	alternate_allele	TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	55	6	64	0	0	0	0	0	0
PAPSS2	9060	ucsc.edu	37	10	89487205	89487205	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	38	5	35	0	63	63	0	0	0
HECTD2	143279	ucsc.edu	37	10	93244390	93244390	+	Silent	SNP	C	C	A	rs199855841	alternate_allele	TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	49	5	56	0	3	3	0	0	0
ARHGAP19	84986	ucsc.edu	37	10	98985890	98985890	+	Splice_Site	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	52	6	27	0	0	0	0	0	0
PKD2L1	9033	ucsc.edu	37	10	102056007	102056007	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	46	5	43	0	0	0	0	0	0
KAZALD1	81621	ucsc.edu	37	10	102822631	102822631	+	Silent	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	46	5	44	0	0	0	0	0	0
FGF8	2253	ucsc.edu	37	10	103534515	103534515	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	41	4	67	0	0	0	0	0	0
GPR123	84435	ucsc.edu	37	10	134916339	134916339	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	35	4	63	0	0	0	0	0	0
TUBGCP2	10844	ucsc.edu	37	10	135099016	135099016	+	Silent	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	45	5	69	0	94	94	0	0	0
PHRF1	57661	ucsc.edu	37	11	608533	608533	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	46	5	52	0	57	57	0	0	0
PIDD	55367	ucsc.edu	37	11	804256	804256	+	Missense_Mutation	SNP	C	C	A	rs201895214	alternate_allele	TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	44	5	50	0	8	8	0	0	0
RPLP2	6181	ucsc.edu	37	11	810286	810286	+	Missense_Mutation	SNP	C	C	A	rs199757717	alternate_allele	TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	48	6	84	0	1339	1338	0	0	1
MUC2	4583	broad.mit.edu	37	11	1098668	1098668	+	Silent	SNP	G	G	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	25	8	45	0	0	0	0	0	0
MUC5B	727897	ucsc.edu	37	11	1248331	1248331	+	Silent	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	40	4	50	0	0	0	0	0	0
INS	3630	ucsc.edu	37	11	2182199	2182199	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	29	4	48	0	0	0	0	0	0
TRIM21	6737	ucsc.edu	37	11	4406908	4406908	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	27	4	28	0	18	18	0	0	0
OR52N5	390075	ucsc.edu	37	11	5799500	5799500	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	39	4	29	0	0	0	0	0	0
OR56A4	120793	ucsc.edu	37	11	6023763	6023763	+	Silent	SNP	G	G	T	rs116036052	byfrequency;alternate_allele	TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	40	4	57	0	0	0	0	0	0
DCHS1	8642	ucsc.edu	37	11	6644787	6644787	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	25	4	30	0	2	2	0	0	0
MICAL2	9645	ucsc.edu	37	11	12183909	12183909	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	36	4	49	0	10	10	0	0	0
PARVA	55742	ucsc.edu	37	11	12540035	12540035	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	33	4	50	0	111	111	0	0	0
USH1C	10083	ucsc.edu	37	11	17527377	17527377	+	Silent	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	50	5	65	0	2	2	0	0	0
UEVLD	55293	ucsc.edu	37	11	18610199	18610199	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	40	5	71	0	17	17	0	0	0
SLC6A5	9152	ucsc.edu	37	11	20622688	20622688	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	33	4	39	0	0	0	0	0	0
MUC15	143662	ucsc.edu	37	11	26587115	26587115	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	35	4	43	0	0	0	0	0	0
WT1	7490	ucsc.edu	37	11	32421579	32421579	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	45	5	56	0	0	0	0	0	0
KIAA1549L	25758	ucsc.edu	37	11	33689522	33689522	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	36	4	72	0	0	0	0	0	0
SLC1A2	6506	ucsc.edu	37	11	35323077	35323077	+	Silent	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	41	4	35	0	0	0	0	0	0
LRRC4C	57689	ucsc.edu	37	11	40137715	40137715	+	Missense_Mutation	SNP	C	C	A	rs141998335	alternate_allele	TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	32	5	46	0	1	1	0	0	0
PHF21A	51317	ucsc.edu	37	11	45986866	45986866	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	40	4	26	0	0	0	0	0	0
DGKZ	8525	ucsc.edu	37	11	46388119	46388119	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	21	4	26	0	1	1	0	0	0
NR1H3	10062	ucsc.edu	37	11	47282834	47282834	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	45	4	81	0	44	44	0	0	0
FNBP4	23360	ucsc.edu	37	11	47765698	47765698	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	42	4	49	0	39	39	0	0	0
TRIM51HP	440041	broad.mit.edu	37	11	55065601	55065601	+	RNA	SNP	C	C	G	rs4100282		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	30	3	32	0	0	0	0	0	0
OR7E5P	219445	ucsc.edu	37	11	55747435	55747435	+	RNA	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	30	4	68	0	0	0	0	0	0
OR7E5P	219445	ucsc.edu	37	11	55747511	55747511	+	RNA	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	23	4	50	0	5	5	0	0	0
OR8I2	120586	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	11	55861472	55861472	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	91	26	101	0	0	0	0	0	0
TNKS1BP1	85456	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	11	57076186	57076186	+	Silent	SNP	C	C	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	244	100	404	2	39	17	22	0	0
ZDHHC5	25921	ucsc.edu	37	11	57463496	57463496	+	Silent	SNP	C	C	A	rs140343860	alternate_allele	TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	36	5	54	0	38	38	0	0	0
MS4A14	84689	ucsc.edu	37	11	60184126	60184126	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	27	4	28	0	0	0	0	0	0
VWCE	220001	ucsc.edu	37	11	61039194	61039194	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	50	5	35	0	10	10	0	0	0
VWCE	220001	ucsc.edu	37	11	61048116	61048116	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	64	7	78	0	0	0	0	0	0
INCENP	3619	ucsc.edu	37	11	61908498	61908498	+	Silent	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	34	4	50	0	12	12	0	0	0
EEF1G	1937	ucsc.edu	37	11	62327282	62327282	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	43	4	58	0	3100	3089	5	3	3
EEF1G	1937	ucsc.edu	37	11	62341309	62341309	+	Silent	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	43	5	61	0	0	0	0	0	0
TUT1	64852	ucsc.edu	37	11	62343647	62343647	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	28	6	39	0	29	29	0	0	0
BSCL2	26580	ucsc.edu	37	11	62458269	62458269	+	Missense_Mutation	SNP	G	G	T	rs150914934	alternate_allele	TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	42	4	48	0	0	0	0	0	0
SLC3A2	6520	ucsc.edu	37	11	62648666	62648666	+	Silent	SNP	G	G	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	18	4	25	0	249	248	0	1	0
FKBP2	2286	ucsc.edu	37	11	64010736	64010736	+	Silent	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	60	6	68	0	332	331	0	1	0
CCDC88B	283234	ucsc.edu	37	11	64119644	64119644	+	Silent	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	53	5	61	0	4	4	0	0	0
CCDC88B	283234	ucsc.edu	37	11	64120905	64120905	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	37	4	60	0	8	8	0	0	0
SF1	7536	ucsc.edu	37	11	64537439	64537439	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	35	4	25	0	1	1	0	0	0
ATG2A	23130	ucsc.edu	37	11	64677266	64677266	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	45	5	58	0	18	18	0	0	0
CAPN1	823	ucsc.edu	37	11	64956075	64956075	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	42	4	54	0	593	592	1	0	0
PCNXL3	399909	ucsc.edu	37	11	65389837	65389837	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	13	4	15	0	0	0	0	0	0
PACS1	55690	ucsc.edu	37	11	65983734	65983734	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	44	5	59	0	0	0	0	0	0
RIN1	9610	ucsc.edu	37	11	66103847	66103847	+	Silent	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	42	5	51	0	21	21	0	0	0
C11orf80	79703	ucsc.edu	37	11	66595793	66595793	+	Silent	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	43	5	49	0	19	19	0	0	0
TBC1D10C	374403	ucsc.edu	37	11	67172966	67172966	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	38	4	56	0	0	0	0	0	0
CARNS1	57571	ucsc.edu	37	11	67191581	67191581	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	27	5	50	0	0	0	0	0	0
PPFIA1	8500	ucsc.edu	37	11	70200468	70200468	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	41	5	56	0	52	52	0	0	0
CTTN	2017	ucsc.edu	37	11	70281840	70281840	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	27	5	40	0	351	351	0	0	0
RNF121	55298	ucsc.edu	37	11	71707350	71707350	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	40	4	63	0	76	76	0	0	0
CHRDL2	25884	ucsc.edu	37	11	74414449	74414449	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	40	4	67	0	0	0	0	0	0
TENM4	26011	ucsc.edu	37	11	78372610	78372610	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	27	4	28	0	4	4	0	0	0
FUT4	2526	ucsc.edu	37	11	94278256	94278256	+	Silent	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	38	4	63	0	3	3	0	0	0
DCUN1D5	84259	ucsc.edu	37	11	102937041	102937041	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	52	5	62	0	23	23	0	0	0
NCAM1	4684	ucsc.edu	37	11	113073133	113073133	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	48	6	55	0	1	1	0	0	0
ZBTB16	7704	ucsc.edu	37	11	114118002	114118002	+	Silent	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	42	4	59	0	9	9	0	0	0
DSCAML1	57453	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	11	117375681	117375681	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	67	27	102	0	23	13	10	0	0
SLC37A4	2542	ucsc.edu	37	11	118898936	118898936	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	19	4	19	0	227	225	2	0	0
TMEM225	338661	ucsc.edu	37	11	123756105	123756105	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	49	5	57	0	0	0	0	0	0
ROBO4	54538	ucsc.edu	37	11	124756952	124756952	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	44	5	83	0	15	15	0	0	0
CCDC15	80071	ucsc.edu	37	11	124908465	124908465	+	Silent	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	13	4	10	0	0	0	0	0	0
CDON	50937	ucsc.edu	37	11	125853987	125853987	+	Silent	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	51	5	41	0	0	0	0	0	0
C12orf5	57103	ucsc.edu	37	12	4459055	4459055	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	63	6	58	0	0	0	0	0	0
ANO2	57101	ucsc.edu	37	12	5721865	5721865	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	40	5	67	0	0	0	0	0	0
CD27	939	ucsc.edu	37	12	6560553	6560553	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	43	6	68	0	4	4	0	0	0
GPR162	27239	ucsc.edu	37	12	6936291	6936291	+	Silent	SNP	G	G	T	rs139203738	byfrequency;alternate_allele	TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	43	4	119	0	13	13	0	0	0
ACSM4	341392	ucsc.edu	37	12	7475898	7475898	+	Silent	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	33	4	25	0	0	0	0	0	0
CD163L1	283316	ucsc.edu	37	12	7548933	7548933	+	Missense_Mutation	SNP	C	C	A	rs145169248	alternate_allele	TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	42	5	43	0	0	0	0	0	0
CD163L1	283316	ucsc.edu	37	12	7548962	7548962	+	Silent	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	35	5	34	0	0	0	0	0	0
NANOG	79923	ucsc.edu	37	12	7945794	7945794	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	40	4	41	0	1	1	0	0	0
MFAP5	8076	ucsc.edu	37	12	8800766	8800766	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	52	5	51	0	0	0	0	0	0
OLR1	4973	ucsc.edu	37	12	10321695	10321695	+	Silent	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	41	4	58	1	2	2	0	0	0
LRP6	4040	ucsc.edu	37	12	12397584	12397584	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	34	5	56	0	0	0	0	0	0
HEBP1	50865	ucsc.edu	37	12	13140254	13140254	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	38	6	49	0	0	0	0	0	0
ITPR2	3709	ucsc.edu	37	12	26568412	26568412	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	81	9	87	0	7	7	0	0	0
PPFIBP1	8496	ucsc.edu	37	12	27799019	27799019	+	Nonsense_Mutation	SNP	G	G	T	rs138904548	alternate_allele	TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	41	4	38	0	105	105	0	0	0
DENND5B	160518	ucsc.edu	37	12	31579322	31579322	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	37	4	19	0	4	4	0	0	0
ADAMTS20	80070	ucsc.edu	37	12	43826114	43826114	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	49	5	36	0	0	0	0	0	0
SLC38A1	81539	ucsc.edu	37	12	46622980	46622980	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	42	6	50	0	76	75	0	0	0
WNT10B	7480	ucsc.edu	37	12	49364268	49364268	+	Silent	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	31	5	53	1	0	0	0	0	0
LIMA1	51474	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	12	50571511	50571511	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	193	89	213	0	66	35	31	0	0
SARNP	84324	ucsc.edu	37	12	56188600	56188600	+	Missense_Mutation	SNP	C	C	A	rs183066383	alternate_allele	TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	52	5	65	0	0	0	0	0	0
CS	1431	ucsc.edu	37	12	56676207	56676207	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	43	4	62	0	0	0	0	0	0
TAC3	6866	ucsc.edu	37	12	57406231	57406231	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	40	4	54	1	0	0	0	0	0
MYO1A	4640	ucsc.edu	37	12	57432744	57432744	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	36	4	64	0	0	0	0	0	0
LRP1	4035	ucsc.edu	37	12	57589705	57589705	+	Missense_Mutation	SNP	C	C	A	rs148336699	alternate_allele	TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	44	4	56	1	55	54	1	0	0
MBD6	114785	ucsc.edu	37	12	57922754	57922754	+	Missense_Mutation	SNP	C	C	A	rs144794136	byfrequency;alternate_allele	TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	39	4	60	0	110	110	0	0	0
RPSAP52	204010	ucsc.edu	37	12	66152445	66152445	+	RNA	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	37	5	40	0	0	0	0	0	0
TMTC2	160335	ucsc.edu	37	12	83251184	83251184	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	49	5	59	0	74	74	0	0	0
CEP290	80184	ucsc.edu	37	12	88471041	88471041	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	28	4	35	0	25	25	0	0	0
GNPTAB	79158	ucsc.edu	37	12	102151030	102151030	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	43	4	58	0	32	32	0	0	0
MYO1H	283446	ucsc.edu	37	12	109877435	109877435	+	Splice_Site	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	31	4	29	0	0	0	0	0	0
CUX2	23316	ucsc.edu	37	12	111772333	111772333	+	Silent	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	43	4	73	0	0	0	0	0	0
FAM109A	144717	ucsc.edu	37	12	111801084	111801084	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	43	4	57	0	22	22	0	0	0
ACAD10	80724	ucsc.edu	37	12	112184951	112184951	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	49	6	59	0	77	77	0	0	0
ALDH2	217	ucsc.edu	37	12	112241720	112241720	+	Silent	SNP	G	G	T	rs190914158	alternate_allele	TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	17	4	26	0	2029	2028	0	0	1
HECTD4	283450	ucsc.edu	37	12	112684725	112684725	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	36	4	39	0	11	11	0	0	0
HECTD4	283450	ucsc.edu	37	12	112720994	112720994	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	56	6	54	0	5	5	0	0	0
OAS3	4940	ucsc.edu	37	12	113385827	113385827	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	27	4	28	0	8	8	0	0	0
PLBD2	196463	ucsc.edu	37	12	113822700	113822700	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	30	4	70	0	78	78	0	0	0
MED13L	23389	ucsc.edu	37	12	116429696	116429696	+	Silent	SNP	G	G	T	rs142191700	alternate_allele	TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	50	5	57	1	30	30	0	0	0
MED13L	23389	ucsc.edu	37	12	116446261	116446261	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	43	4	55	0	40	39	1	0	0
NOS1	4842	ucsc.edu	37	12	117715884	117715884	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	44	5	67	0	0	0	0	0	0
HNF1A	6927	ucsc.edu	37	12	121434417	121434417	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	43	4	52	0	48	47	0	0	0
MLXIP	22877	ucsc.edu	37	12	122614537	122614537	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	37	4	55	0	16	16	0	0	0
VPS33A	65082	ucsc.edu	37	12	122717484	122717484	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	19	4	44	0	31	31	0	0	0
HIP1R	9026	ucsc.edu	37	12	123342741	123342741	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	42	4	72	0	85	85	0	0	0
RILPL1	353116	ucsc.edu	37	12	123970180	123970180	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	36	4	38	0	0	0	0	0	0
NCOR2	9612	ucsc.edu	37	12	124817695	124817695	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	52	5	81	0	56	56	0	0	0
DDX51	317781	ucsc.edu	37	12	132626450	132626450	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	45	5	51	0	21	21	0	0	0
LNX2	222484	ucsc.edu	37	13	28130464	28130464	+	Silent	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	42	4	67	0	29	29	0	0	0
MTUS2	23281	ucsc.edu	37	13	29599442	29599442	+	Silent	SNP	C	C	A	rs201600406	alternate_allele	TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	70	7	81	0	0	0	0	0	0
NBEA	26960	ucsc.edu	37	13	35758125	35758125	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	40	4	38	0	12	12	0	0	0
NBEA	26960	ucsc.edu	37	13	35758176	35758176	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	44	4	38	0	5	5	0	0	0
KBTBD7	84078	ucsc.edu	37	13	41767338	41767338	+	Silent	SNP	G	G	T	rs2039134	byfrequency;alternate_allele	TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	48	5	75	0	0	0	0	0	0
NAA16	79612	ucsc.edu	37	13	41941751	41941751	+	Silent	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	42	4	16	0	7	7	0	0	0
ZC3H13	23091	ucsc.edu	37	13	46549856	46549856	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	41	4	36	0	42	42	0	0	0
ESD	2098	ucsc.edu	37	13	47354109	47354109	+	Silent	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	54	5	99	1	51	51	0	0	0
MLNR	2862	ucsc.edu	37	13	49794673	49794673	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	26	4	27	0	0	0	0	0	0
INTS6	26512	ucsc.edu	37	13	51956177	51956177	+	Silent	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	35	4	19	0	0	0	0	0	0
TPP2	7174	ucsc.edu	37	13	103299567	103299567	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	40	4	19	0	0	0	0	0	0
MYO16	23026	ucsc.edu	37	13	109779831	109779831	+	Silent	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	35	4	44	0	0	0	0	0	0
CARKD	55739	ucsc.edu	37	13	111277601	111277601	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	42	4	50	0	48	48	0	0	0
LAMP1	3916	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	13	113964011	113964011	+	Silent	SNP	C	C	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	117	64	116	0	546	275	271	0	0
CHD8	57680	ucsc.edu	37	14	21863274	21863274	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	30	4	30	0	0	0	0	0	0
CHD8	57680	ucsc.edu	37	14	21871372	21871372	+	Splice_Site	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	52	6	49	0	0	0	0	0	0
PCK2	5106	ucsc.edu	37	14	24569412	24569412	+	Silent	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	32	4	40	0	0	0	0	0	0
IRF9	10379	ucsc.edu	37	14	24635088	24635088	+	Missense_Mutation	SNP	C	C	A	rs140928070	byfrequency;alternate_allele	TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	45	5	62	0	65	65	0	0	0
NFATC4	4776	ucsc.edu	37	14	24839508	24839508	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	28	4	74	0	7	7	0	0	0
G2E3	55632	ucsc.edu	37	14	31074919	31074919	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	42	4	46	0	7	7	0	0	0
ARHGAP5	394	ucsc.edu	37	14	32615479	32615479	+	Silent	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	44	4	33	0	0	0	0	0	0
BAZ1A	11177	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	14	35242930	35242930	+	Silent	SNP	A	A	G	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	46	26	43	0	0	0	0	0	0
FANCM	57697	hgsc.bcm.edu	37	14	45636324	45636324	+	Silent	SNP	C	C	A	rs112784867	bycluster;byfrequency;alternate_allele	TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	127	10	118	0	0	0	0	0	0
ARID4A	5926	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	14	58827698	58827698	+	Nonsense_Mutation	DEL	C	C	-	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	132	59	85	0	0	0	0	0	0
KCNH5	27133	ucsc.edu	37	14	63316474	63316474	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	76	7	88	0	0	0	0	0	0
ESR2	2100	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	14	64746749	64746749	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	345	152	426	1	0	0	0	0	0
SYNJ2BP-COX16	0	ucsc.edu	37	14	70793097	70793097	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	26	4	25	0	165	165	0	0	0
MAP3K9	4293	ucsc.edu	37	14	71199654	71199654	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	42	4	64	0	4	4	0	0	0
YLPM1	56252	ucsc.edu	37	14	75265566	75265566	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	57	5	59	0	33	33	0	0	0
IFT43	112752	ucsc.edu	37	14	76452154	76452154	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	63	6	55	0	128	127	0	1	0
POMT2	29954	ucsc.edu	37	14	77769239	77769239	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	22	4	22	0	8	8	0	0	0
C14orf159	80017	ucsc.edu	37	14	91655260	91655260	+	Missense_Mutation	SNP	G	G	T	rs145176315	alternate_allele	TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	36	4	29	0	0	0	0	0	0
PRIMA1	145270	ucsc.edu	37	14	94203672	94203672	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	34	4	55	0	0	0	0	0	0
ATG2B	55102	ucsc.edu	37	14	96773254	96773254	+	Splice_Site	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	41	4	24	0	0	0	0	0	0
HHIPL1	84439	ucsc.edu	37	14	100118990	100118990	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	30	4	33	0	0	0	0	0	0
SLC25A47	283600	ucsc.edu	37	14	100792557	100792557	+	Silent	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	40	5	68	0	0	0	0	0	0
TECPR2	9895	ucsc.edu	37	14	102898339	102898339	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	41	5	50	0	17	17	0	0	0
TRMT61A	115708	ucsc.edu	37	14	103998968	103998968	+	Silent	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	62	6	83	0	15	15	0	0	0
INF2	64423	ucsc.edu	37	14	105175648	105175648	+	Silent	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	41	4	56	0	45	45	0	0	0
GPR132	29933	ucsc.edu	37	14	105517538	105517538	+	Silent	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	37	4	58	0	2	2	0	0	0
HERC2P2	400322	ucsc.edu	37	15	23300030	23300030	+	RNA	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	38	4	42	0	6	6	0	0	0
LOC100288637	0	broad.mit.edu;ucsc.edu	37	15	30938440	30938440	+	RNA	SNP	A	A	G	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	51	9	40	0	0	0	0	0	0
LOC100288637	0	broad.mit.edu	37	15	30938448	30938448	+	RNA	SNP	A	A	G	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	43	8	40	1	4	0	4	0	0
FAN1	22909	ucsc.edu	37	15	31197177	31197177	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	40	4	41	0	13	13	0	0	0
RYR3	6263	ucsc.edu	37	15	34072473	34072473	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	42	4	53	0	5	5	0	0	0
SLC12A6	9990	ucsc.edu	37	15	34538064	34538064	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	39	4	50	0	0	0	0	0	0
SLC12A6	9990	ucsc.edu	37	15	34544573	34544573	+	Silent	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	42	5	51	0	0	0	0	0	0
C15orf55	256646	ucsc.edu	37	15	34640511	34640511	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	40	4	70	0	0	0	0	0	0
PAK6	56924	ucsc.edu	37	15	40565820	40565820	+	Silent	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	53	5	66	0	0	0	0	0	0
ITPKA	3706	ucsc.edu	37	15	41795017	41795017	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	32	4	47	0	0	0	0	0	0
JMJD7-PLA2G4B	8681	ucsc.edu	37	15	42137181	42137181	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	25	5	24	0	6	6	0	0	0
SPTBN5	51332	ucsc.edu	37	15	42172471	42172471	+	Missense_Mutation	SNP	C	C	A	rs140057818	by1000genomes;alternate_allele	TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	19	4	21	1	0	0	0	0	0
PLA2G4F	255189	ucsc.edu	37	15	42434834	42434834	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	70	7	81	0	0	0	0	0	0
GANC	2595	ucsc.edu	37	15	42646611	42646611	+	Missense_Mutation	SNP	G	G	T	rs187596079	alternate_allele	TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	33	4	22	0	6	6	0	0	0
SHF	90525	ucsc.edu	37	15	45464474	45464474	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	39	4	52	0	5	5	0	0	0
DYX1C1	161582	ucsc.edu	37	15	55742566	55742566	+	Splice_Site	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	40	4	65	0	0	0	0	0	0
CGNL1	84952	ucsc.edu	37	15	57731569	57731569	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	39	5	68	0	6	6	0	0	0
NARG2	79664	ucsc.edu	37	15	60741050	60741050	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	40	4	41	0	1	1	0	0	0
RORA	6095	ucsc.edu	37	15	60907186	60907186	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	61	6	74	0	0	0	0	0	0
HERC1	8925	ucsc.edu	37	15	63901303	63901303	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	36	4	34	0	17	17	0	0	0
PIAS1	8554	ucsc.edu	37	15	68434627	68434627	+	Splice_Site	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	24	4	33	0	0	0	0	0	0
LARP6	55323	ucsc.edu	37	15	71125146	71125146	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	37	4	58	0	50	49	0	1	0
NPTN	27020	ucsc.edu	37	15	73889636	73889636	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	41	4	54	0	4	4	0	0	0
STRA6	64220	ucsc.edu	37	15	74494589	74494589	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	60	6	92	0	0	0	0	0	0
CSPG4	1464	ucsc.edu	37	15	75981826	75981826	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	41	4	61	0	2	2	0	0	0
PEAK1	0	ucsc.edu	37	15	77473155	77473155	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	61	6	61	0	5	5	0	0	0
HMG20A	10363	ucsc.edu	37	15	77769915	77769915	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	51	5	48	0	23	23	0	0	0
ACSBG1	23205	ucsc.edu	37	15	78474852	78474852	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	43	4	60	0	0	0	0	0	0
CHRNA5	1138	ucsc.edu	37	15	78882720	78882720	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	60	6	90	0	4	4	0	0	0
CTSH	1512	ucsc.edu	37	15	79217690	79217690	+	Silent	SNP	C	C	A	rs2044226	byfrequency;alternate_allele	TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	26	4	28	0	2	2	0	0	0
KIAA1199	57214	ucsc.edu	37	15	81199122	81199122	+	Silent	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	42	4	69	0	0	0	0	0	0
EFTUD1	79631	ucsc.edu	37	15	82533745	82533745	+	Splice_Site	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	33	4	29	0	0	0	0	0	0
ZSCAN2	54993	ucsc.edu	37	15	85164677	85164677	+	Silent	SNP	C	C	A	rs145697567	byfrequency;alternate_allele	TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	62	6	119	1	9	9	0	0	0
ANPEP	290	ucsc.edu	37	15	90349394	90349394	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	33	4	84	0	289	289	0	0	0
ANPEP	290	ucsc.edu	37	15	90349407	90349407	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	31	4	68	0	316	315	0	0	1
GABARAPL3	23766	ucsc.edu	37	15	90892289	90892289	+	RNA	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	27	4	50	0	0	0	0	0	0
FES	2242	ucsc.edu	37	15	91430244	91430244	+	Silent	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	40	4	64	0	3	3	0	0	0
DNM1P46	196968	ucsc.edu	37	15	100339973	100339973	+	RNA	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	28	4	47	0	0	0	0	0	0
PCSK6	5046	ucsc.edu	37	15	101847480	101847480	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	37	4	27	0	0	0	0	0	0
TARSL2	123283	ucsc.edu	37	15	102252173	102252173	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	38	4	39	0	13	13	0	0	0
LUC7L	55692	ucsc.edu	37	16	277241	277241	+	Silent	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	34	4	36	0	0	0	0	0	0
WFIKKN1	117166	ucsc.edu	37	16	683146	683146	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	43	4	48	0	1	1	0	0	0
RPUSD1	113000	ucsc.edu	37	16	837591	837591	+	Silent	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	38	4	37	0	33	33	0	0	0
SPSB3	90864	ucsc.edu	37	16	1828210	1828210	+	Silent	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	35	4	52	0	97	97	0	0	0
PKD1	5310	ucsc.edu	37	16	2159395	2159395	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	42	4	38	0	12	12	0	0	0
TRAF7	84231	ucsc.edu	37	16	2222337	2222337	+	Silent	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	43	4	47	0	92	92	0	0	0
SLX4	84464	ucsc.edu	37	16	3645695	3645695	+	Splice_Site	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	41	4	49	0	0	0	0	0	0
CREBBP	1387	ucsc.edu	37	16	3795340	3795340	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	61	6	32	0	48	48	0	0	0
CORO7	79585	ucsc.edu	37	16	4405298	4405298	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	48	5	56	0	1	1	0	0	0
ZNF500	26048	ucsc.edu	37	16	4803023	4803023	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	102	10	89	0	12	12	0	0	0
ARL6IP1	23204	ucsc.edu	37	16	18812780	18812780	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	52	5	57	0	202	202	0	0	0
CCP110	9738	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	16	19548870	19548870	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	62	25	51	0	11	4	7	0	0
TNRC6A	27327	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	16	24826534	24826534	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	136	36	93	0	17	14	3	0	0
IL21R	50615	ucsc.edu	37	16	27457380	27457380	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	56	6	59	0	0	0	0	0	0
KIAA0556	23247	ucsc.edu	37	16	27784504	27784504	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	49	5	22	0	15	15	0	0	0
IL27	246778	ucsc.edu	37	16	28511047	28511047	+	Silent	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	43	4	25	0	0	0	0	0	0
CD19	930	ucsc.edu	37	16	28948675	28948675	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	61	7	72	0	0	0	0	0	0
LAT	27040	ucsc.edu	37	16	28997925	28997925	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	47	5	71	0	0	0	0	0	0
C16orf54	283897	ucsc.edu	37	16	29755606	29755606	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	36	4	20	0	0	0	0	0	0
ASPHD1	253982	ucsc.edu	37	16	29917208	29917208	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	69	7	54	0	14	14	0	0	0
SHCBP1	79801	ucsc.edu	37	16	46617977	46617977	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	42	4	22	0	4	4	0	0	0
ABCC11	85320	ucsc.edu	37	16	48210860	48210860	+	Silent	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	42	6	40	0	0	0	0	0	0
ZNF423	23090	ucsc.edu	37	16	49670583	49670583	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	43	5	47	0	3	3	0	0	0
CCDC102A	92922	ucsc.edu	37	16	57549316	57549316	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	49	5	59	0	70	70	0	0	0
GPR114	221188	ucsc.edu	37	16	57601782	57601782	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	34	4	34	0	1	1	0	0	0
GPR114	221188	ucsc.edu	37	16	57601816	57601816	+	Silent	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	43	4	36	0	0	0	0	0	0
GPR114	221188	ucsc.edu	37	16	57608898	57608898	+	Silent	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	37	4	39	0	0	0	0	0	0
CNOT1	23019	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	16	58585134	58585134	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	464	292	226	0	57	14	41	1	1
LRRC36	55282	ucsc.edu	37	16	67418837	67418837	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	111	10	82	0	3	3	0	0	0
ZDHHC1	29800	ucsc.edu	37	16	67428995	67428995	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	37	4	36	0	8	8	0	0	0
RLTPR	146206	ucsc.edu	37	16	67683017	67683017	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	31	5	33	0	0	0	0	0	0
MTSS1L	92154	ucsc.edu	37	16	70698647	70698647	+	Missense_Mutation	SNP	G	G	T	rs146665408	alternate_allele	TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	39	4	31	0	8	8	0	0	0
ZFP1	162239	ucsc.edu	37	16	75204219	75204219	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	53	7	48	0	34	34	0	0	0
CTRB2	440387	ucsc.edu	37	16	75238167	75238167	+	Silent	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	72	8	86	0	0	0	0	0	0
CDH15	1013	ucsc.edu	37	16	89246730	89246730	+	Silent	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	34	5	21	0	0	0	0	0	0
ANKRD11	29123	ucsc.edu	37	16	89351140	89351140	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	61	6	64	0	39	39	0	0	0
DPEP1	1800	ucsc.edu	37	16	89704484	89704484	+	Nonsense_Mutation	SNP	G	G	T	rs147872447	alternate_allele	TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	26	4	34	0	0	0	0	0	0
SPATA2L	124044	ucsc.edu	37	16	89764286	89764286	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	34	4	38	0	39	39	0	0	0
VPS9D1	9605	ucsc.edu	37	16	89777094	89777094	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	30	4	25	0	56	56	0	0	0
TCF25	22980	ucsc.edu	37	16	89962464	89962464	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	52	5	43	0	224	224	0	0	0
RPH3AL	9501	ucsc.edu	37	17	169267	169267	+	Missense_Mutation	SNP	C	C	A	rs150241223	alternate_allele	TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	51	7	65	0	55	55	0	0	0
MYBBP1A	10514	ucsc.edu	37	17	4449141	4449141	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	40	5	33	0	0	0	0	0	0
GP1BA	2811	hgsc.bcm.edu;broad.mit.edu	37	17	4837101	4837101	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	56	14	77	0	3	2	1	0	0
CAMTA2	23125	ucsc.edu	37	17	4883442	4883442	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	60	7	73	0	44	44	0	0	0
CHRNB1	1140	ucsc.edu	37	17	7350212	7350212	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	52	5	55	0	62	61	0	0	1
SENP3	26168	ucsc.edu	37	17	7474028	7474028	+	Silent	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	37	4	28	0	164	164	0	0	0
MPDU1	9526	ucsc.edu	37	17	7489390	7489390	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	42	4	47	0	0	0	0	0	0
SPDYE4	388333	ucsc.edu	37	17	8656789	8656789	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	28	4	44	0	0	0	0	0	0
TVP23C	201158	ucsc.edu	37	17	15457087	15457087	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	632	81	334	49	89	12	77	0	0
NCOR1	9611	ucsc.edu	37	17	15942832	15942832	+	Missense_Mutation	SNP	C	C	A	rs139149781	byfrequency;alternate_allele	TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	94	9	51	0	142	142	0	0	0
UBB	7314	broad.mit.edu	37	17	16285476	16285476	+	Silent	SNP	C	C	G	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	189	4	159	0	6957	6944	3	2	8
SREBF1	6720	ucsc.edu	37	17	17716757	17716757	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	25	4	19	0	55	55	0	0	0
SHMT1	6470	ucsc.edu	37	17	18244118	18244118	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	29	4	21	0	0	0	0	0	0
RNF112	7732	ucsc.edu	37	17	19318195	19318195	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	51	5	76	0	0	0	0	0	0
PPY2	23614	ucsc.edu	37	17	26574583	26574583	+	RNA	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	37	4	39	0	0	0	0	0	0
SPAG5-AS1	100506436	ucsc.edu	37	17	26944202	26944202	+	RNA	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	43	4	23	0	0	0	0	0	0
MYO18A	399687	ucsc.edu	37	17	27448110	27448110	+	Silent	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	37	4	19	0	37	37	0	0	0
SLC6A4	6532	hgsc.bcm.edu	37	17	28525539	28525565	+	Frame_Shift_Del	DEL	TAATAATACGCTATTGGGAAGAAAATA	TAATAATACGCTATTGGGAAGAAAATA	-	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	TAATAATACGCTATTGGGAAGAAAATA	TAATAATACGCTATTGGGAAGAAAATA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	89	18	81	0	0	0	0	0	0
BLMH	642	hgsc.bcm.edu;broad.mit.edu	37	17	28601215	28601215	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	85	14	58	1	0	0	0	0	0
NLE1	54475	ucsc.edu	37	17	33460467	33460467	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	61	6	47	0	47	47	0	0	0
RASL10B	91608	ucsc.edu	37	17	34068053	34068053	+	Splice_Site	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	51	5	52	0	0	0	0	0	0
MLLT6	4302	ucsc.edu	37	17	36868239	36868239	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	44	4	45	0	64	64	0	0	0
MLLT6	4302	ucsc.edu	37	17	36871979	36871979	+	Missense_Mutation	SNP	G	G	T	rs142342422	alternate_allele	TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	62	6	47	0	88	87	0	1	0
MLLT6	4302	ucsc.edu	37	17	36872681	36872681	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	44	4	51	0	122	121	1	0	0
PNMT	5409	ucsc.edu	37	17	37826436	37826436	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	28	4	38	0	0	0	0	0	0
MED24	9862	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	17	38182477	38182477	+	Silent	SNP	C	C	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	200	45	203	0	95	62	33	0	0
KRT17	3872	ucsc.edu	37	17	39780701	39780701	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	43	4	20	0	0	0	0	0	0
JUP	3728	ucsc.edu	37	17	39912060	39912060	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	64	7	49	0	589	588	0	1	0
STAT5B	6777	ucsc.edu	37	17	40369219	40369219	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	48	5	28	0	79	79	0	0	0
STAT5A	6776	ucsc.edu	37	17	40456409	40456409	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	87	8	94	1	16	16	0	0	0
STAT5A	6776	hgsc.bcm.edu;ucsc.edu	37	17	40459443	40459443	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	46	7	40	0	24	24	0	0	0
BECN1	8678	ucsc.edu	37	17	40975889	40975889	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	49	5	61	0	0	0	0	0	0
RND2	8153	hgsc.bcm.edu	37	17	41180503	41180503	+	Silent	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	170	12	136	0	19	19	0	0	0
ITGB3	3690	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	17	45369560	45369560	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	104	67	108	0	145	52	93	0	0
OSBPL7	114881	ucsc.edu	37	17	45893999	45893999	+	Silent	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	41	4	47	0	17	17	0	0	0
HOXB2	3212	broad.mit.edu	37	17	46620496	46620496	+	Silent	SNP	A	A	G	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	160	3	138	0	89	89	0	0	0
GIP	2695	ucsc.edu	37	17	47038311	47038311	+	Missense_Mutation	SNP	C	C	A	rs148732781		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	37	4	27	0	0	0	0	0	0
COL1A1	1277	ucsc.edu	37	17	48269385	48269385	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	41	4	33	0	0	0	0	0	0
WFIKKN2	124857	ucsc.edu	37	17	48916889	48916889	+	Silent	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	44	5	40	0	0	0	0	0	0
HSF5	124535	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	17	56540550	56540550	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	227	69	144	0	0	0	0	0	0
TEX14	56155	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	17	56663339	56663339	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	257	74	209	1	0	0	0	0	0
METTL2A	339175	broad.mit.edu	37	17	60501296	60501296	+	Silent	SNP	A	A	G	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	63	21	47	0	67	42	25	0	0
MRC2	9902	ucsc.edu	37	17	60768367	60768367	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	21	4	25	0	11	11	0	0	0
CYB561	1534	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	17	61511913	61511913	+	Silent	SNP	G	G	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	50	33	44	0	142	57	85	0	0
SCN4A	6329	ucsc.edu	37	17	62043569	62043569	+	Missense_Mutation	SNP	C	C	A	rs201429528	alternate_allele	TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	29	5	11	0	0	0	0	0	0
PITPNC1	26207	ucsc.edu	37	17	65529051	65529051	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	27	4	18	0	14	14	0	0	0
ABCA5	23461	hgsc.bcm.edu;broad.mit.edu	37	17	67303077	67303077	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	113	39	63	0	4	2	2	0	0
LLGL2	3993	ucsc.edu	37	17	73565065	73565065	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	40	4	32	0	3	3	0	0	0
FBF1	85302	ucsc.edu	37	17	73919689	73919689	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	33	6	22	0	5	5	0	0	0
EVPL	2125	ucsc.edu	37	17	74020136	74020136	+	Missense_Mutation	SNP	C	C	A	rs200956385	alternate_allele	TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	44	4	30	0	53	52	0	0	1
CBX2	84733	ucsc.edu	37	17	77758287	77758287	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	53	5	65	0	1	1	0	0	0
GAA	2548	ucsc.edu	37	17	78087041	78087041	+	Nonsense_Mutation	SNP	G	G	T	rs1800309	byfrequency;alternate_allele	TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	24	4	22	0	101	101	0	0	0
ENDOV	284131	ucsc.edu	37	17	78395747	78395747	+	Silent	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	44	6	40	0	5	5	0	0	0
NOTUM	147111	broad.mit.edu	37	17	79913365	79913365	+	Silent	SNP	G	G	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	54	20	43	0	0	0	0	0	0
GPS1	2873	ucsc.edu	37	17	80012540	80012540	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	37	4	43	0	268	268	0	0	0
FASN	2194	ucsc.edu	37	17	80044324	80044324	+	Silent	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	51	5	53	0	31	31	0	0	0
LAMA1	284217	ucsc.edu	37	18	6974972	6974972	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	39	4	40	0	44	44	0	0	0
TWSG1	57045	ucsc.edu	37	18	9399487	9399487	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	50	5	35	0	35	35	0	0	0
MC2R	4158	ucsc.edu	37	18	13884886	13884886	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	42	4	64	0	0	0	0	0	0
ANKRD30B	374860	ucsc.edu	37	18	14791414	14791414	+	Silent	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	63	7	71	1	0	0	0	0	0
ABHD3	171586	ucsc.edu	37	18	19244153	19244153	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	47	5	52	0	14	14	0	0	0
DSC3	1825	ucsc.edu	37	18	28588039	28588039	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	30	4	32	0	0	0	0	0	0
CELF4	56853	ucsc.edu	37	18	35145464	35145464	+	Silent	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	36	4	80	0	0	0	0	0	0
ACAA2	10449	ucsc.edu	37	18	47318532	47318532	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	49	5	60	0	0	0	0	0	0
MAPK4	5596	ucsc.edu	37	18	48248452	48248452	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	52	5	37	0	2	2	0	0	0
SMAD4	4089	ucsc.edu	37	18	48584505	48584505	+	Silent	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	39	4	38	0	0	0	0	0	0
NEDD4L	23327	ucsc.edu	37	18	55998048	55998048	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	51	5	58	0	35	35	0	0	0
MC4R	4160	ucsc.edu	37	18	58039572	58039572	+	Missense_Mutation	SNP	G	G	T	rs146099234	alternate_allele	TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	43	5	52	0	0	0	0	0	0
ZNF516	9658	ucsc.edu	37	18	74154200	74154200	+	Silent	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	50	6	67	0	3	3	0	0	0
ZNF236	7776	ucsc.edu	37	18	74659608	74659608	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	55	5	70	0	0	0	0	0	0
ADNP2	22850	ucsc.edu	37	18	77895112	77895112	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	66	6	92	0	24	24	0	0	0
HCN2	610	broad.mit.edu	37	19	615935	615935	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	22	3	36	0	0	0	0	0	0
NDUFS7	374291	ucsc.edu	37	19	1391035	1391035	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	29	4	55	0	262	261	0	1	0
ATP8B3	148229	ucsc.edu	37	19	1805888	1805888	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	47	6	73	0	0	0	0	0	0
AP3D1	8943	ucsc.edu	37	19	2112906	2112906	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	54	5	100	0	74	74	0	0	0
OAZ1	4946	ucsc.edu	37	19	2271804	2271804	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	42	5	46	0	1043	1041	1	1	0
C19orf35	374872	ucsc.edu	37	19	2280906	2280906	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	42	4	44	0	0	0	0	0	0
ZNF57	126295	ucsc.edu	37	19	2918147	2918147	+	Missense_Mutation	SNP	G	G	T	rs143668692	byfrequency;alternate_allele	TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	48	5	51	1	11	11	0	0	0
TLE6	79816	ucsc.edu	37	19	2989139	2989139	+	Missense_Mutation	SNP	C	C	A	rs144709669	alternate_allele	TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	45	5	64	0	1	1	0	0	0
TLE2	7089	ucsc.edu	37	19	3006508	3006508	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	22	4	27	0	53	53	0	0	0
FZR1	51343	ucsc.edu	37	19	3525894	3525894	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	30	4	47	0	33	33	0	0	0
TBXA2R	6915	ucsc.edu	37	19	3600036	3600036	+	Silent	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	27	4	44	0	0	0	0	0	0
TBXA2R	6915	ucsc.edu	37	19	3600058	3600058	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	42	4	51	0	0	0	0	0	0
NMRK2	27231	ucsc.edu	37	19	3938684	3938684	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	38	4	38	0	0	0	0	0	0
MPND	84954	ucsc.edu	37	19	4354106	4354106	+	Silent	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	35	5	63	0	72	72	0	0	0
PLIN3	10226	ucsc.edu	37	19	4839437	4839437	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	30	4	32	0	149	149	0	0	0
KDM4B	23030	ucsc.edu	37	19	5047537	5047537	+	Silent	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	33	4	75	0	26	26	0	0	0
C19orf70	125988	ucsc.edu	37	19	5679356	5679356	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	37	4	44	0	2	2	0	0	0
INSR	3643	ucsc.edu	37	19	7132285	7132285	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	25	4	45	0	36	36	0	0	0
PNPLA6	10908	ucsc.edu	37	19	7623833	7623833	+	Silent	SNP	C	C	A	rs138837774	byfrequency;alternate_allele	TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	37	4	67	0	121	119	0	1	0
FBN3	84467	ucsc.edu	37	19	8209830	8209830	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	32	4	39	0	0	0	0	0	0
MUC16	94025	ucsc.edu	37	19	9046335	9046335	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	61	7	92	0	0	0	0	0	0
PPAN	56342	ucsc.edu	37	19	10221010	10221010	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	44	4	62	0	0	0	0	0	0
DNMT1	1786	ucsc.edu	37	19	10248508	10248508	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	27	4	18	0	0	0	0	0	0
DNMT1	1786	ucsc.edu	37	19	10266561	10266561	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	45	6	59	1	7	7	0	0	0
PDE4A	5141	ucsc.edu	37	19	10570336	10570336	+	Silent	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	33	4	50	0	0	0	0	0	0
CARM1	10498	ucsc.edu	37	19	11019854	11019854	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	57	5	85	0	60	60	0	0	0
ZNF833P	401898	ucsc.edu	37	19	11796044	11796044	+	RNA	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	62	7	62	0	0	0	0	0	0
ZNF823	55552	ucsc.edu	37	19	11832536	11832536	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	54	5	82	0	6	6	0	0	0
CCDC130	81576	ucsc.edu	37	19	13873864	13873864	+	Silent	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	31	4	52	0	43	43	0	0	0
DCAF15	90379	ucsc.edu	37	19	14065198	14065198	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	49	5	56	1	13	13	0	0	0
SLC1A6	6511	ucsc.edu	37	19	15083589	15083589	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	40	4	46	0	19	19	0	0	0
BABAM1	29086	ucsc.edu	37	19	17389816	17389816	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	33	4	25	0	139	138	1	0	0
UBA52	7311	ucsc.edu	37	19	18685710	18685710	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	41	4	63	1	1809	1807	1	1	0
ZNF430	80264	ucsc.edu	37	19	21240303	21240303	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	30	4	62	0	17	8	0	9	0
WDR88	126248	ucsc.edu	37	19	33642191	33642191	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	24	4	39	0	0	0	0	0	0
KIAA0355	9710	ucsc.edu	37	19	34791742	34791742	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	42	4	41	0	17	17	0	0	0
GRAMD1A	57655	ucsc.edu	37	19	35510176	35510176	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	33	4	59	0	66	66	0	0	0
LOC100128675	0	ucsc.edu	37	19	35550915	35550915	+	RNA	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	32	5	38	0	2	2	0	0	0
CD22	933	ucsc.edu	37	19	35831852	35831852	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	64	6	77	0	0	0	0	0	0
GAPDHS	26330	ucsc.edu	37	19	36033229	36033229	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	40	4	73	1	1	1	0	0	0
GAPDHS	26330	ucsc.edu	37	19	36034650	36034650	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	51	5	86	0	3	3	0	0	0
UPK1A	11045	ucsc.edu	37	19	36164353	36164353	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	56	5	112	0	0	0	0	0	0
MLL4	8085	ucsc.edu	37	19	36211197	36211197	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	36	4	37	0	5	5	0	0	0
MLL4	8085	ucsc.edu	37	19	36211209	36211209	+	Silent	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	31	4	37	0	4	4	0	0	0
IGFLR1	79713	ucsc.edu	37	19	36231982	36231982	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	42	4	81	0	3	3	0	0	0
ARHGAP33	115703	ucsc.edu	37	19	36273703	36273703	+	Silent	SNP	G	G	T	rs201822304	alternate_allele	TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	17	4	36	0	8	8	0	0	0
APLP1	333	ucsc.edu	37	19	36360573	36360573	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	30	4	46	0	0	0	0	0	0
HKR1	284459	ucsc.edu	37	19	37853254	37853254	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	33	4	50	0	40	40	0	0	0
ZNF793	390927	ucsc.edu	37	19	38028002	38028002	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	35	5	42	0	4	4	0	0	0
SIPA1L3	23094	ucsc.edu	37	19	38610233	38610233	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	33	4	79	0	31	31	0	0	0
YIF1B	90522	ucsc.edu	37	19	38798151	38798151	+	Missense_Mutation	SNP	C	C	A	rs140083774	alternate_allele	TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	42	5	54	0	0	0	0	0	0
ACTN4	81	ucsc.edu	37	19	39207935	39207935	+	Silent	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	31	4	32	0	750	750	0	0	0
LRFN1	57622	ucsc.edu	37	19	39804831	39804831	+	Silent	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	42	4	58	0	0	0	0	0	0
RPS16	6217	ucsc.edu	37	19	39926291	39926291	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	47	6	58	0	2847	2841	0	4	2
FCGBP	8857	ucsc.edu	37	19	40366195	40366195	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	37	4	90	0	7	7	0	0	0
ZNF546	339327	ucsc.edu	37	19	40520748	40520748	+	Missense_Mutation	SNP	C	C	A	rs143827814	alternate_allele	TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	60	6	58	0	5	5	0	0	0
ZNF546	339327	ucsc.edu	37	19	40521204	40521204	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	71	8	59	0	3	3	0	0	0
HIPK4	147746	ucsc.edu	37	19	40885639	40885639	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	21	4	22	0	0	0	0	0	0
SPTBN4	57731	ucsc.edu	37	19	40993663	40993663	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	60	6	73	0	0	0	0	0	0
LTBP4	8425	ucsc.edu	37	19	41114248	41114248	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	20	4	29	0	25	24	1	0	0
CYP2S1	29785	ucsc.edu	37	19	41711994	41711994	+	Silent	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	43	4	43	0	1	1	0	0	0
TGFB1	7040	ucsc.edu	37	19	41838160	41838160	+	Missense_Mutation	SNP	C	C	A	rs200164212	alternate_allele	TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	25	4	55	0	85	85	0	0	0
TGFB1	7040	ucsc.edu	37	19	41850655	41850655	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	38	4	66	0	0	0	0	0	0
CEACAM4	1089	ucsc.edu	37	19	42126962	42126962	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	37	4	59	0	0	0	0	0	0
ARHGEF1	9138	ucsc.edu	37	19	42410728	42410728	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	24	4	60	0	39	39	0	0	0
POU2F2	5452	ucsc.edu	37	19	42599786	42599786	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	46	5	42	0	1	1	0	0	0
MEGF8	1954	ucsc.edu	37	19	42838201	42838201	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	45	5	44	0	11	11	0	0	0
CNFN	84518	ucsc.edu	37	19	42891327	42891327	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	59	6	69	0	22	22	0	0	0
ETHE1	23474	ucsc.edu	37	19	44030464	44030464	+	Silent	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	43	5	65	0	81	80	0	1	0
ZNF284	342909	broad.mit.edu	37	19	44590761	44590761	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	110	4	112	0	2	2	0	0	0
LOC100379224	0	ucsc.edu	37	19	44610521	44610521	+	RNA	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	32	4	35	0	0	0	0	0	0
KLC3	147700	ucsc.edu	37	19	45850756	45850756	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	56	6	76	0	7	7	0	0	0
KLC3	147700	ucsc.edu	37	19	45851940	45851940	+	Silent	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	12	4	18	0	6	6	0	0	0
ERCC1	2067	ucsc.edu	37	19	45923611	45923611	+	Silent	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	22	4	30	0	98	98	0	0	0
IGFL3	388555	ucsc.edu	37	19	46627534	46627534	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	38	4	65	1	0	0	0	0	0
PPP5C	5536	ucsc.edu	37	19	46857043	46857043	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	41	4	38	0	98	97	1	0	0
AP2S1	1175	ucsc.edu	37	19	47349271	47349271	+	Silent	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	34	4	46	0	247	246	1	0	0
EHD2	30846	ucsc.edu	37	19	48244435	48244435	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	43	4	78	0	268	268	0	0	0
DKKL1	27120	ucsc.edu	37	19	49867855	49867855	+	Silent	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	41	4	80	0	2	2	0	0	0
SLC17A7	57030	ucsc.edu	37	19	49937244	49937244	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	22	4	62	0	1	1	0	0	0
ALDH16A1	126133	ucsc.edu	37	19	49973630	49973630	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	53	5	114	0	38	38	0	0	0
PRR12	57479	ucsc.edu	37	19	50099678	50099678	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	27	5	39	0	17	17	0	0	0
KLK7	5650	ucsc.edu	37	19	51485078	51485078	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	28	4	39	0	0	0	0	0	0
SIGLEC9	27180	ucsc.edu	37	19	51633284	51633284	+	Missense_Mutation	SNP	G	G	T	rs150823857	byfrequency;alternate_allele	TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	58	6	102	0	1	1	0	0	0
ZNF841	284371	ucsc.edu	37	19	52569709	52569709	+	Silent	SNP	G	G	T	rs192036158	by1000genomes;alternate_allele	TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	24	4	55	0	5	5	0	0	0
MIR518B	574474	ucsc.edu	37	19	54206052	54206052	+	RNA	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	66	6	68	0	0	0	0	0	0
VSTM1	284415	ucsc.edu	37	19	54545033	54545033	+	Silent	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	41	4	39	0	0	0	0	0	0
LILRB4	11006	ucsc.edu	37	19	55176625	55176625	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	24	5	42	1	0	0	0	0	0
GP6	51206	ucsc.edu	37	19	55525881	55525881	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	77	7	122	1	0	0	0	0	0
EPS8L1	54869	ucsc.edu	37	19	55598752	55598752	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	53	5	86	0	104	104	0	0	0
HSPBP1	23640	ucsc.edu	37	19	55777316	55777316	+	Silent	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	30	4	32	0	180	180	0	0	0
ZNF805	390980	ucsc.edu	37	19	57765042	57765042	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	43	4	60	0	9	9	0	0	0
ZNF671	79891	ucsc.edu	37	19	58232302	58232302	+	Silent	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	40	5	64	0	7	7	0	0	0
ADI1	55256	ucsc.edu	37	2	3504719	3504719	+	Missense_Mutation	SNP	G	G	T	rs139359190	alternate_allele	TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	36	5	52	0	162	162	0	0	0
CPSF3	51692	ucsc.edu	37	2	9613123	9613123	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	42	4	36	0	68	68	0	0	0
NBAS	51594	ucsc.edu	37	2	15319241	15319241	+	Splice_Site	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	43	6	86	0	5	5	0	0	0
C2orf44	80304	ucsc.edu	37	2	24262046	24262046	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	52	5	61	0	5	5	0	0	0
FKBP1B	2281	ucsc.edu	37	2	24283794	24283794	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	34	5	30	0	1	1	0	0	0
MAPRE3	22924	ucsc.edu	37	2	27248600	27248600	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	41	4	67	0	0	0	0	0	0
GTF3C2	2976	ucsc.edu	37	2	27564816	27564816	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	66	6	60	0	0	0	0	0	0
SPDYA	245711	ucsc.edu	37	2	29063147	29063147	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	44	4	58	0	0	0	0	0	0
WDR43	23160	ucsc.edu	37	2	29152511	29152511	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	53	6	66	0	63	63	0	0	0
CAPN13	92291	ucsc.edu	37	2	30977231	30977231	+	Splice_Site	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	23	4	31	0	0	0	0	0	0
BIRC6	57448	ucsc.edu	37	2	32740469	32740469	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	39	5	35	0	28	28	0	0	0
HEATR5B	54497	ucsc.edu	37	2	37283595	37283595	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	40	4	87	0	0	0	0	0	0
SLC8A1	6546	ucsc.edu	37	2	40402401	40402401	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	42	5	33	0	0	0	0	0	0
SLC8A1	6546	ucsc.edu	37	2	40656723	40656723	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	41	4	48	1	6	6	0	0	0
EML4	27436	ucsc.edu	37	2	42490360	42490360	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	73	7	64	0	27	27	0	0	0
SLC3A1	6519	ucsc.edu	37	2	44502778	44502778	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	35	6	35	0	492	490	0	0	2
SPTBN1	6711	ucsc.edu	37	2	54885165	54885165	+	Silent	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	43	4	49	0	209	209	0	0	0
FANCL	55120	ucsc.edu	37	2	58388728	58388728	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	40	4	44	0	26	26	0	0	0
BMP10	27302	ucsc.edu	37	2	69093080	69093080	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	42	4	57	0	0	0	0	0	0
CD207	50489	ucsc.edu	37	2	71061076	71061076	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	35	4	32	0	0	0	0	0	0
NAGK	55577	ucsc.edu	37	2	71303784	71303784	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	39	4	61	0	82	82	0	0	0
TET3	200424	ucsc.edu	37	2	74275395	74275395	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	33	4	41	0	7	7	0	0	0
AUP1	550	ucsc.edu	37	2	74756022	74756022	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	48	5	88	0	328	328	0	0	0
RETSAT	54884	ucsc.edu	37	2	85571838	85571838	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	41	5	48	0	188	188	0	0	0
GGCX	2677	ucsc.edu	37	2	85783305	85783305	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	42	4	44	0	0	0	0	0	0
PTCD3	55037	ucsc.edu	37	2	86352175	86352175	+	Silent	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	70	8	53	1	74	74	0	0	0
IMMT	10989	ucsc.edu	37	2	86385730	86385730	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	20	4	19	0	182	182	0	0	0
GGT8P	645367	ucsc.edu	37	2	91968639	91968639	+	RNA	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	46	5	54	0	0	0	0	0	0
TEKT4	150483	ucsc.edu	37	2	95542466	95542466	+	Silent	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	35	4	43	0	0	0	0	0	0
GPAT2	150763	ucsc.edu	37	2	96688722	96688722	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	48	5	64	0	7	7	0	0	0
ADRA2B	151	ucsc.edu	37	2	96781447	96781447	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	41	5	35	0	0	0	0	0	0
STARD7	56910	ucsc.edu	37	2	96858882	96858882	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	43	5	51	0	168	167	1	0	0
SEMA4C	54910	ucsc.edu	37	2	97526961	97526961	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	42	4	82	0	10	10	0	0	0
KIAA1211L	343990	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	99413866	99413867	+	Frame_Shift_Del	DEL	GT	GT	-	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	GT	GT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	102	42	181	0	0	0	0	0	0
MAP4K4	9448	ucsc.edu	37	2	102505288	102505288	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	40	4	27	0	57	57	0	0	0
MERTK	10461	ucsc.edu	37	2	112686840	112686840	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	43	6	52	0	2	2	0	0	0
MERTK	10461	ucsc.edu	37	2	112779951	112779951	+	Silent	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	69	7	98	0	6	6	0	0	0
ZC3H6	376940	ucsc.edu	37	2	113069432	113069432	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	46	5	31	0	9	9	0	0	0
PSD4	23550	ucsc.edu	37	2	113940606	113940606	+	Silent	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	43	4	67	0	6	6	0	0	0
STEAP3	55240	ucsc.edu	37	2	120005377	120005377	+	Silent	SNP	C	C	A	rs140126918	byfrequency;alternate_allele	TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	40	6	69	0	4	3	0	0	1
EPB41L5	57669	ucsc.edu	37	2	120858280	120858280	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	45	5	43	0	0	0	0	0	0
GLI2	2736	ucsc.edu	37	2	121747291	121747291	+	Silent	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	58	6	85	0	0	0	0	0	0
CLASP1	23332	ucsc.edu	37	2	122216417	122216417	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	63	6	48	0	0	0	0	0	0
MYO7B	4648	ucsc.edu	37	2	128388912	128388912	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	39	4	65	0	19	19	0	0	0
LOC401010	0	ucsc.edu	37	2	132200622	132200622	+	RNA	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	35	4	41	0	0	0	0	0	0
NCKAP5	344148	ucsc.edu	37	2	133541617	133541617	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	37	4	66	0	1	1	0	0	0
ZRANB3	84083	ucsc.edu	37	2	136072945	136072945	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	36	4	32	0	3	3	0	0	0
THSD7B	80731	ucsc.edu	37	2	137872740	137872740	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	45	5	47	0	0	0	0	0	0
ACVR1	90	ucsc.edu	37	2	158656003	158656003	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	68	8	81	0	0	0	0	0	0
CCDC148	130940	ucsc.edu	37	2	159033105	159033105	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	37	4	21	0	7	7	0	0	0
TANC1	85461	hgsc.bcm.edu	37	2	160035592	160035592	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	121	8	149	1	1	1	0	0	0
KCNH7	90134	hgsc.bcm.edu	37	2	163279987	163279987	+	Silent	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	117	8	148	0	0	0	0	0	0
SCN3A	6328	ucsc.edu	37	2	165994431	165994431	+	Silent	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	54	5	60	0	3	3	0	0	0
BBS5	129880	ucsc.edu	37	2	170359688	170359688	+	Silent	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	35	4	31	0	0	0	0	0	0
TTN	7273	ucsc.edu	37	2	179473205	179473205	+	Splice_Site	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	27	4	13	0	0	0	0	0	0
CERKL	375298	ucsc.edu	37	2	182413585	182413585	+	Splice_Site	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	44	5	51	0	0	0	0	0	0
DNAJC10	54431	ucsc.edu	37	2	183583015	183583015	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	61	6	61	0	0	0	0	0	0
GLS	2744	ucsc.edu	37	2	191765349	191765349	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	36	4	39	0	83	83	0	0	0
DNAH7	56171	ucsc.edu	37	2	196682499	196682499	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	41	5	45	0	7	7	0	0	0
ANKRD44	91526	ucsc.edu	37	2	198011812	198011812	+	Silent	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	41	4	29	0	1	1	0	0	0
AOX1	316	ucsc.edu	37	2	201473715	201473715	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	66	9	65	1	0	0	0	0	0
EEF1B2	1933	broad.mit.edu	37	2	207025358	207025358	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	111	5	133	3	814	812	0	1	1
ERBB4	2066	ucsc.edu	37	2	212248766	212248766	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	70	7	75	0	0	0	0	0	0
ERBB4	2066	ucsc.edu	37	2	212543826	212543826	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	43	4	48	0	0	0	0	0	0
TNS1	7145	ucsc.edu	37	2	218682941	218682941	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	37	4	55	0	29	29	0	0	0
VIL1	7429	ucsc.edu	37	2	219296623	219296623	+	Silent	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	43	4	46	0	2	2	0	0	0
ANKZF1	55139	ucsc.edu	37	2	220099702	220099702	+	Silent	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	42	4	81	0	33	33	0	0	0
ANKZF1	55139	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	220099828	220099828	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	57	22	68	0	28	18	10	0	0
ASIC4	55515	ucsc.edu	37	2	220402010	220402010	+	Silent	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	27	4	47	1	0	0	0	0	0
SLC4A3	6508	ucsc.edu	37	2	220500541	220500541	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	28	4	40	0	0	0	0	0	0
MOGAT1	116255	ucsc.edu	37	2	223559130	223559130	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	41	4	54	0	4	4	0	0	0
TRIP12	9320	ucsc.edu	37	2	230705591	230705591	+	Silent	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	40	4	42	0	36	36	0	0	0
DGKD	8527	ucsc.edu	37	2	234354361	234354361	+	Silent	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	49	6	87	0	11	11	0	0	0
GPC1	2817	ucsc.edu	37	2	241398587	241398587	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	33	4	37	0	96	95	0	1	0
KIF1A	547	ucsc.edu	37	2	241664806	241664806	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	27	4	32	0	0	0	0	0	0
SNED1	25992	ucsc.edu	37	2	241979578	241979578	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	21	4	15	0	4	4	0	0	0
PPP1R7	5510	ucsc.edu	37	2	242099901	242099901	+	Missense_Mutation	SNP	C	C	A	rs144669419	alternate_allele	TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	35	4	25	0	0	0	0	0	0
ANO7	50636	ucsc.edu	37	2	242140732	242140732	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	46	5	60	0	0	0	0	0	0
RBCK1	10616	ucsc.edu	37	20	409609	409609	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	38	4	52	0	59	59	0	0	0
CSNK2A1	1457	ucsc.edu	37	20	464648	464648	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	46	5	61	0	126	125	1	0	0
PCED1A	64773	ucsc.edu	37	20	2819677	2819677	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	35	4	76	0	41	41	0	0	0
SLC4A11	83959	ucsc.edu	37	20	3214163	3214163	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	48	5	77	0	0	0	0	0	0
SIGLEC1	6614	ucsc.edu	37	20	3675486	3675486	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	40	4	73	0	1	1	0	0	0
AP5S1	55317	ucsc.edu	37	20	3804812	3804812	+	Silent	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	38	4	67	0	14	14	0	0	0
RASSF2	9770	ucsc.edu	37	20	4771169	4771169	+	Silent	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	41	4	51	0	1	1	0	0	0
ANKEF1	63926	ucsc.edu	37	20	10019059	10019059	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	79	9	77	0	21	21	0	0	0
RIN2	54453	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	20	19955386	19955386	+	Silent	SNP	C	C	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	68	33	105	0	18	11	7	0	0
FOXS1	2307	ucsc.edu	37	20	30432897	30432897	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	21	4	48	0	0	0	0	0	0
BPIFB3	359710	ucsc.edu	37	20	31647701	31647701	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	25	4	33	0	0	0	0	0	0
SNTA1	6640	ucsc.edu	37	20	32000230	32000230	+	Silent	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	44	5	61	0	0	0	0	0	0
ZNF341	84905	ucsc.edu	37	20	32379072	32379072	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	34	4	58	0	10	10	0	0	0
GHRH	2691	ucsc.edu	37	20	35879622	35879622	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	91	9	110	0	0	0	0	0	0
LBP	3929	ucsc.edu	37	20	36992682	36992682	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	44	4	69	0	0	0	0	0	0
LPIN3	64900	ucsc.edu	37	20	39986035	39986035	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	62	6	86	1	52	52	0	0	0
CHD6	84181	ucsc.edu	37	20	40033493	40033493	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	44	5	86	0	25	25	0	0	0
SGK2	10110	ucsc.edu	37	20	42195723	42195723	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	43	6	54	0	31	31	0	0	0
WISP2	8839	ucsc.edu	37	20	43348657	43348657	+	Silent	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	21	4	30	0	1	1	0	0	0
CTSA	5476	ucsc.edu	37	20	44527047	44527047	+	Silent	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	35	4	35	0	880	880	0	0	0
CTSA	5476	ucsc.edu	37	20	44527069	44527069	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	31	4	43	0	508	508	0	0	0
PCIF1	63935	ucsc.edu	37	20	44567730	44567730	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	52	6	83	0	72	72	0	0	0
PTGIS	5740	ucsc.edu	37	20	48127695	48127695	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	38	5	44	0	0	0	0	0	0
KCNG1	3755	ucsc.edu	37	20	49626225	49626225	+	Silent	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	26	4	40	0	0	0	0	0	0
TSHZ2	128553	ucsc.edu	37	20	51870592	51870592	+	Silent	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	40	4	59	0	1	1	0	0	0
ADRM1	11047	ucsc.edu	37	20	60879554	60879554	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	48	6	57	0	186	186	0	0	0
COL20A1	57642	ucsc.edu	37	20	61959455	61959455	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	41	4	70	0	0	0	0	0	0
RGS19	10287	ucsc.edu	37	20	62705504	62705504	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	41	4	44	0	0	0	0	0	0
MYT1	4661	ucsc.edu	37	20	62868690	62868690	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	37	4	32	0	0	0	0	0	0
USP25	29761	ucsc.edu	37	21	17138376	17138376	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	39	4	42	0	38	38	0	0	0
USP25	29761	ucsc.edu	37	21	17250225	17250225	+	Silent	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	32	4	32	0	57	57	0	0	0
JAM2	58494	ucsc.edu	37	21	27071036	27071036	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	24	4	44	0	2	2	0	0	0
EVA1C	59271	ucsc.edu	37	21	33825637	33825637	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	31	4	47	0	22	22	0	0	0
CHAF1B	8208	ucsc.edu	37	21	37769778	37769778	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	52	5	56	1	3	3	0	0	0
ZBTB21	49854	ucsc.edu	37	21	43413876	43413876	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	36	5	46	0	5	5	0	0	0
TMPRSS3	64699	ucsc.edu	37	21	43803197	43803197	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	33	5	62	0	0	0	0	0	0
KRTAP12-1	353332	ucsc.edu	37	21	46102032	46102032	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	33	4	56	0	0	0	0	0	0
COL6A1	1291	ucsc.edu	37	21	47423542	47423542	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	52	6	46	0	98	98	0	0	0
IL17RA	23765	ucsc.edu	37	22	17588622	17588622	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	35	4	86	0	0	0	0	0	0
CECR1	51816	ucsc.edu	37	22	17662808	17662808	+	Silent	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	36	4	96	0	5	5	0	0	0
SEPT5	5413	ucsc.edu	37	22	19707394	19707394	+	Silent	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	36	4	113	1	7	7	0	0	0
GNB1L	54584	ucsc.edu	37	22	19789698	19789698	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	40	4	86	0	6	6	0	0	0
PPM1F	9647	ucsc.edu	37	22	22287826	22287826	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	29	4	69	0	6	6	0	0	0
BCR	613	ucsc.edu	37	22	23631732	23631732	+	Silent	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	37	4	78	0	47	47	0	0	0
GGT1	2678	ucsc.edu	37	22	25011031	25011031	+	Missense_Mutation	SNP	C	C	A	rs142987478	alternate_allele	TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	31	4	79	0	181	181	0	0	0
IGLL3P	91353	ucsc.edu	37	22	25715969	25715969	+	RNA	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	40	4	114	0	16	16	0	0	0
ADRBK2	157	ucsc.edu	37	22	26107057	26107057	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	38	5	52	0	1	1	0	0	0
TFIP11	24144	ucsc.edu	37	22	26897976	26897976	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	66	7	118	0	18	18	0	0	0
THOC5	8563	ucsc.edu	37	22	29913073	29913073	+	Silent	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	60	6	129	0	21	21	0	0	0
ASCC2	84164	ucsc.edu	37	22	30204118	30204118	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	38	4	93	0	34	34	0	0	0
CCDC157	550631	ucsc.edu	37	22	30772606	30772606	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	64	6	208	1	1	1	0	0	0
MCM5	4174	ucsc.edu	37	22	35802633	35802633	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	54	6	69	0	55	54	0	0	1
RBFOX2	23543	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	22	36206007	36206007	+	Silent	SNP	A	A	G	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	131	58	172	1	49	25	24	0	0
CDC42EP1	11135	ucsc.edu	37	22	37964239	37964239	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	49	5	157	0	109	109	0	0	0
TRIOBP	11078	ucsc.edu	37	22	38109280	38109280	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	32	4	106	0	0	0	0	0	0
GCAT	23464	ucsc.edu	37	22	38206082	38206082	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	38	4	85	0	13	13	0	0	0
EIF3L	51386	ucsc.edu	37	22	38259318	38259318	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	57	6	98	0	227	226	1	0	0
EIF3L	51386	ucsc.edu	37	22	38266327	38266327	+	Silent	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	35	6	76	0	213	213	0	0	0
MICALL1	85377	ucsc.edu	37	22	38321823	38321823	+	Missense_Mutation	SNP	C	C	A	rs201216667	alternate_allele	TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	25	4	51	0	6	6	0	0	0
MAPK12	6300	ucsc.edu	37	22	50694558	50694558	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	45	5	98	0	5	5	0	0	0
SBF1	6305	ucsc.edu	37	22	50885640	50885640	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	23	4	44	0	27	27	0	0	0
CHKB	1120	ucsc.edu	37	22	51017937	51017937	+	Splice_Site	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	15	5	43	0	0	0	0	0	0
SHANK3	85358	ucsc.edu	37	22	51159785	51159785	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	26	4	58	0	7	7	0	0	0
SHANK3	85358	ucsc.edu	37	22	51160759	51160759	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	34	4	54	0	2	2	0	0	0
CAV3	859	ucsc.edu	37	3	8787317	8787317	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	42	4	54	0	0	0	0	0	0
SETD5	55209	ucsc.edu	37	3	9517775	9517775	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	33	4	27	0	69	69	0	0	0
FGD5	152273	ucsc.edu	37	3	14941938	14941938	+	Silent	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	43	4	32	0	1	1	0	0	0
PLCL2	23228	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	3	17051783	17051783	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	161	53	102	1	14	10	4	0	0
KAT2B	8850	ucsc.edu	37	3	20164195	20164195	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	48	5	28	0	26	26	0	0	0
NEK10	152110	ucsc.edu	37	3	27355796	27355796	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	32	4	21	0	0	0	0	0	0
OSBPL10	114884	ucsc.edu	37	3	31725583	31725583	+	Silent	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	57	6	56	0	223	221	1	0	1
PLCD1	5333	ucsc.edu	37	3	38065836	38065836	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	42	4	64	0	0	0	0	0	0
XYLB	9942	ucsc.edu	37	3	38416746	38416746	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	39	4	44	0	0	0	0	0	0
TRAK1	22906	ucsc.edu	37	3	42251523	42251523	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	65	3	75	3	11	9	2	0	0
COL7A1	1294	ucsc.edu	37	3	48618351	48618351	+	Silent	SNP	C	C	A	rs111360822	bycluster;byfrequency;alternate_allele	TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	52	6	52	0	0	0	0	0	0
CELSR3	1951	ucsc.edu	37	3	48691854	48691854	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	60	6	55	0	3	3	0	0	0
WDR6	11180	ucsc.edu	37	3	49050300	49050300	+	Missense_Mutation	SNP	C	C	A	rs145953012	alternate_allele	TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	32	4	32	0	180	180	0	0	0
KLHDC8B	200942	ucsc.edu	37	3	49212572	49212572	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	44	4	37	0	62	62	0	0	0
APEH	327	ucsc.edu	37	3	49712644	49712644	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	50	6	40	0	267	267	0	0	0
APEH	327	ucsc.edu	37	3	49719828	49719828	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	36	5	34	0	790	789	0	0	1
DOCK3	1795	ucsc.edu	37	3	50971508	50971508	+	Silent	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	41	5	15	0	0	0	0	0	0
RAD54L2	23132	ucsc.edu	37	3	51675822	51675822	+	Silent	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	27	4	12	0	21	21	0	0	0
DNAH1	25981	ucsc.edu	37	3	52378533	52378533	+	Silent	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	68	6	69	0	7	7	0	0	0
DNAH1	25981	ucsc.edu	37	3	52428930	52428930	+	Splice_Site	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	54	6	37	0	1	1	0	0	0
STAB1	23166	ucsc.edu	37	3	52546925	52546925	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	60	6	51	0	8	8	0	0	0
ABI3BP	25890	ucsc.edu	37	3	100568929	100568929	+	Silent	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	42	5	20	0	166	166	0	0	0
ZBTB11	27107	hgsc.bcm.edu	37	3	101390912	101390912	+	Silent	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	186	11	107	0	11	11	0	0	0
KALRN	8997	hgsc.bcm.edu	37	3	124053283	124053283	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	101	8	77	0	7	7	0	0	0
SLC12A8	84561	ucsc.edu	37	3	124837627	124837627	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	48	5	41	0	21	21	0	0	0
C3orf27	23434	broad.mit.edu	37	3	128292497	128292497	+	Missense_Mutation	SNP	C	C	T	rs141693917		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	58	10	50	0	0	0	0	0	0
COL6A5	256076	ucsc.edu	37	3	130095660	130095660	+	Silent	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	30	5	32	0	0	0	0	0	0
KY	339855	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	3	134323200	134323200	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	143	104	111	0	6	4	2	0	0
HPS3	84343	hgsc.bcm.edu;broad.mit.edu	37	3	148885021	148885021	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	45	26	29	1	1	1	0	0	0
ARHGEF26	26084	ucsc.edu	37	3	153909169	153909169	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	62	6	60	0	0	0	0	0	0
SI	6476	ucsc.edu	37	3	164724671	164724671	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	51	5	32	0	0	0	0	0	0
VPS8	23355	ucsc.edu	37	3	184603940	184603940	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	40	4	21	0	0	0	0	0	0
TMEM175	84286	ucsc.edu	37	4	949635	949635	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	49	5	70	0	34	34	0	0	0
CTBP1	1487	ucsc.edu	37	4	1209927	1209927	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	48	5	65	0	306	305	0	0	1
CRIPAK	285464	broad.mit.edu	37	4	1388729	1388729	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	254	4	394	1	19	19	0	0	0
RNF4	6047	ucsc.edu	37	4	2498803	2498803	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	16	4	15	0	67	67	0	0	0
MFSD10	10227	ucsc.edu	37	4	2933791	2933791	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	41	4	72	0	171	170	1	0	0
RGS12	6002	ucsc.edu	37	4	3432654	3432654	+	Silent	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	32	5	49	0	67	67	0	0	0
ZBTB49	166793	ucsc.edu	37	4	4322632	4322632	+	Silent	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	50	5	53	1	6	6	0	0	0
EVC	2121	ucsc.edu	37	4	5733348	5733348	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	35	4	55	0	189	189	0	0	0
PSAPL1	768239	ucsc.edu	37	4	7435334	7435334	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	16	4	32	0	0	0	0	0	0
ABLIM2	84448	ucsc.edu	37	4	7985053	7985053	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	22	4	43	0	5	5	0	0	0
RAB28	9364	ucsc.edu	37	4	13370239	13370239	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	55	6	60	0	38	38	0	0	0
FBXL5	26234	ucsc.edu	37	4	15627174	15627174	+	Silent	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	32	4	40	0	353	353	0	0	0
CD38	952	ucsc.edu	37	4	15835924	15835924	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	72	7	60	1	0	0	0	0	0
FGFBP2	83888	ucsc.edu	37	4	15964665	15964665	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	66	6	124	0	1	1	0	0	0
ATP10D	57205	ucsc.edu	37	4	47527650	47527650	+	Missense_Mutation	SNP	G	G	T	rs201697796	alternate_allele	TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	45	5	36	0	0	0	0	0	0
KDR	3791	ucsc.edu	37	4	55981483	55981483	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	52	5	55	0	2	2	0	0	0
CLOCK	9575	ucsc.edu	37	4	56319980	56319980	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	38	4	25	0	0	0	0	0	0
PPAT	5471	ucsc.edu	37	4	57267513	57267513	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	35	4	34	0	3	3	0	0	0
SPINK2	6691	ucsc.edu	37	4	57676351	57676351	+	Splice_Site	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	38	5	41	0	0	0	0	0	0
EPHA5	2044	ucsc.edu	37	4	66217148	66217148	+	Silent	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	51	5	45	0	0	0	0	0	0
EPHA5	2044	ucsc.edu	37	4	66233140	66233140	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	27	4	37	0	0	0	0	0	0
YTHDC1	91746	ucsc.edu	37	4	69204060	69204060	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	36	5	39	0	47	47	0	0	0
SULT1B1	27284	ucsc.edu	37	4	70596313	70596313	+	Silent	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	41	5	30	0	0	0	0	0	0
PROL1	58503	ucsc.edu	37	4	71275519	71275519	+	Silent	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	43	4	86	0	0	0	0	0	0
ENAM	10117	ucsc.edu	37	4	71509583	71509583	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	68	7	60	0	4	4	0	0	0
SLC4A4	8671	ucsc.edu	37	4	72432773	72432773	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	52	5	45	0	59	59	0	0	0
EREG	2069	ucsc.edu	37	4	75231066	75231066	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	42	4	54	0	7	7	0	0	0
SHROOM3	57619	ucsc.edu	37	4	77660144	77660144	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	41	4	56	0	38	38	0	0	0
SEC31A	22872	ucsc.edu	37	4	83796928	83796928	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	39	4	23	0	76	76	0	0	0
PTPN13	5783	ucsc.edu	37	4	87687632	87687632	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	31	4	23	0	114	113	1	0	0
FAM13A	10144	ucsc.edu	37	4	89668083	89668083	+	Silent	SNP	C	C	A	rs200408844	alternate_allele	TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	62	6	41	0	0	0	0	0	0
ADH4	127	ucsc.edu	37	4	100052908	100052908	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	42	4	55	0	0	0	0	0	0
SLC39A8	64116	ucsc.edu	37	4	103226262	103226262	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	38	4	39	0	0	0	0	0	0
BDH2	56898	ucsc.edu	37	4	104012408	104012408	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	60	7	53	0	235	235	0	0	0
TBCK	93627	ucsc.edu	37	4	107114894	107114894	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	39	4	41	0	25	25	0	0	0
SEC24B	10427	ucsc.edu	37	4	110384800	110384800	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	61	8	68	0	0	0	0	0	0
C4orf21	55345	ucsc.edu	37	4	113508815	113508815	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	40	5	50	0	1	1	0	0	0
SYNPO2	171024	ucsc.edu	37	4	119810281	119810281	+	Silent	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	71	7	90	0	0	0	0	0	0
USP38	84640	ucsc.edu	37	4	144106840	144106840	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	38	4	64	0	43	43	0	0	0
ZNF827	152485	ucsc.edu	37	4	146807179	146807179	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	48	5	71	0	10	10	0	0	0
DCLK2	166614	ucsc.edu	37	4	151120186	151120186	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	27	4	17	0	0	0	0	0	0
FHDC1	85462	ucsc.edu	37	4	153896621	153896621	+	Silent	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	30	4	45	0	0	0	0	0	0
RNF175	285533	ucsc.edu	37	4	154641345	154641345	+	Silent	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	41	5	63	0	0	0	0	0	0
DCHS2	54798	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	4	155256161	155256161	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	108	55	89	1	0	0	0	0	0
SPOCK3	50859	ucsc.edu	37	4	167663166	167663166	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	121	12	78	0	0	0	0	0	0
SPOCK3	50859	ucsc.edu	37	4	167983644	167983644	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	36	4	39	0	0	0	0	0	0
DDX60	55601	ucsc.edu	37	4	169158851	169158851	+	Silent	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	45	5	35	0	0	0	0	0	0
CEP44	80817	ucsc.edu	37	4	175220340	175220340	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	61	7	48	0	9	9	0	0	0
TENM3	55714	ucsc.edu	37	4	183710407	183710407	+	Silent	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	31	4	36	0	8	8	0	0	0
STOX2	56977	ucsc.edu	37	4	184931614	184931614	+	Silent	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	40	5	25	0	8	8	0	0	0
TERT	7015	ucsc.edu	37	5	1272338	1272338	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	38	4	32	0	0	0	0	0	0
ADCY2	108	ucsc.edu	37	5	7695932	7695932	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	38	4	57	0	17	17	0	0	0
ADCY2	108	ucsc.edu	37	5	7727296	7727296	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	38	4	74	0	14	14	0	0	0
DNAH5	1767	ucsc.edu	37	5	13736032	13736032	+	Missense_Mutation	SNP	C	C	A	rs140380565	alternate_allele	TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	41	4	115	0	0	0	0	0	0
DNAH5	1767	ucsc.edu	37	5	13751195	13751195	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	50	5	76	0	0	0	0	0	0
DNAH5	1767	ucsc.edu	37	5	13922242	13922242	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	33	4	64	1	0	0	0	0	0
TRIO	7204	ucsc.edu	37	5	14397202	14397202	+	Silent	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	40	4	58	0	9	9	0	0	0
ANKH	56172	ucsc.edu	37	5	14756002	14756002	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	44	5	72	0	3	3	0	0	0
ZNF622	90441	ucsc.edu	37	5	16465598	16465598	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	41	4	107	0	19	19	0	0	0
FAM134B	54463	ucsc.edu	37	5	16474962	16474962	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	40	4	67	0	148	148	0	0	0
CDH18	1016	ucsc.edu	37	5	19543978	19543978	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	33	4	87	1	0	0	0	0	0
CDH18	1016	ucsc.edu	37	5	19591303	19591303	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	30	4	52	0	0	0	0	0	0
CDH10	1008	ucsc.edu	37	5	24535389	24535389	+	Splice_Site	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	33	4	74	0	0	0	0	0	0
CDH6	1004	ucsc.edu	37	5	31323205	31323205	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	44	4	46	0	378	378	0	0	0
SPEF2	79925	ucsc.edu	37	5	35654684	35654684	+	Silent	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	61	7	54	0	2	2	0	0	0
LMBRD2	92255	ucsc.edu	37	5	36143434	36143434	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	43	7	51	0	11	11	0	0	0
NADKD1	133686	ucsc.edu	37	5	36219698	36219698	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	56	6	54	0	0	0	0	0	0
NNT	23530	hgsc.bcm.edu	37	5	43656832	43656832	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	166	10	117	1	120	120	0	0	0
PARP8	79668	ucsc.edu	37	5	50111271	50111271	+	Silent	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	40	5	43	0	0	0	0	0	0
IL31RA	133396	ucsc.edu	37	5	55185822	55185822	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	47	6	56	0	0	0	0	0	0
MAP3K1	4214	ucsc.edu	37	5	56176629	56176629	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	53	6	30	0	0	0	0	0	0
MAP3K1	4214	ucsc.edu	37	5	56181766	56181766	+	Silent	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	48	5	60	0	1	1	0	0	0
IPO11	51194	ucsc.edu	37	5	61846259	61846259	+	Silent	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	80	8	83	0	20	20	0	0	0
SREK1	140890	ucsc.edu	37	5	65465889	65465889	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	16	4	11	0	1	1	0	0	0
BHMT	635	ucsc.edu	37	5	78422020	78422020	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	51	5	68	0	347	347	0	0	0
SSBP2	23635	ucsc.edu	37	5	80785101	80785101	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	41	5	38	0	26	26	0	0	0
TMEM167A	153339	ucsc.edu	37	5	82352971	82352971	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	30	4	32	0	0	0	0	0	0
VCAN	1462	ucsc.edu	37	5	82849187	82849187	+	Silent	SNP	C	C	A	rs149711061	alternate_allele	TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	69	7	92	0	0	0	0	0	0
MBLAC2	153364	ucsc.edu	37	5	89757069	89757069	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	42	4	32	0	3	3	0	0	0
MCTP1	79772	ucsc.edu	37	5	94204110	94204110	+	Silent	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	26	4	19	0	1	1	0	0	0
ERAP2	64167	ucsc.edu	37	5	96215656	96215656	+	Silent	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	51	5	61	0	3	3	0	0	0
SLC25A46	91137	ucsc.edu	37	5	110097443	110097443	+	Silent	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	25	4	33	0	16	16	0	0	0
MCC	4163	ucsc.edu	37	5	112487060	112487060	+	Silent	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	39	4	44	0	7	7	0	0	0
TSSK1B	83942	ucsc.edu	37	5	112769664	112769664	+	Silent	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	42	4	52	0	0	0	0	0	0
MEGF10	84466	ucsc.edu	37	5	126771152	126771152	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	44	5	37	0	0	0	0	0	0
PRRC1	133619	ucsc.edu	37	5	126869470	126869470	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	40	4	85	0	0	0	0	0	0
SLC27A6	28965	ucsc.edu	37	5	128302311	128302311	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	21	4	37	0	0	0	0	0	0
SLC27A6	28965	ucsc.edu	37	5	128368866	128368866	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	38	4	22	0	0	0	0	0	0
CTNNA1	1495	ucsc.edu	37	5	138269766	138269766	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	43	4	46	0	989	987	1	0	1
PSD2	84249	ucsc.edu	37	5	139193186	139193186	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	44	4	58	0	0	0	0	0	0
PCDHAC2	56134	ucsc.edu	37	5	140346797	140346797	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	38	5	46	0	0	0	0	0	0
PCDHB13	56123	hgsc.bcm.edu	37	5	140595879	140595879	+	Silent	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	180	9	344	2	3	3	0	0	0
PCDHB15	56121	hgsc.bcm.edu	37	5	140625665	140625665	+	Silent	SNP	T	T	C	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	27	2	61	0	36	36	0	0	0
PCDHGA8	9708	ucsc.edu	37	5	140772901	140772901	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	79	7	98	0	0	0	0	0	0
PCDHGB5	56101	ucsc.edu	37	5	140779239	140779239	+	Silent	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	30	4	42	0	0	0	0	0	0
ARAP3	64411	ucsc.edu	37	5	141051307	141051307	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	35	4	66	0	0	0	0	0	0
SPRY4	81848	ucsc.edu	37	5	141694592	141694592	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	40	4	56	0	12	12	0	0	0
CSF1R	1436	ucsc.edu	37	5	149440498	149440498	+	Silent	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	32	4	23	0	8	8	0	0	0
NDST1	3340	ucsc.edu	37	5	149907410	149907410	+	Silent	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	37	6	37	0	29	29	0	0	0
CYFIP2	26999	ucsc.edu	37	5	156809656	156809656	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	42	4	31	0	1	1	0	0	0
EBF1	1879	ucsc.edu	37	5	158523375	158523375	+	Silent	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	40	4	35	0	0	0	0	0	0
EBF1	1879	ucsc.edu	37	5	158524122	158524122	+	Silent	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	34	4	30	0	0	0	0	0	0
NKX2-5	1482	ucsc.edu	37	5	172659621	172659621	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	60	6	87	0	0	0	0	0	0
HRH2	3274	ucsc.edu	37	5	175110705	175110705	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	44	5	87	1	1	1	0	0	0
GPRIN1	114787	ucsc.edu	37	5	176024788	176024788	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	51	5	70	0	11	11	0	0	0
RMND5B	64777	ucsc.edu	37	5	177565239	177565239	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	30	4	47	0	49	49	0	0	0
HNRNPAB	3182	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	5	177632984	177632984	+	Silent	SNP	G	G	A	rs201431713	alternate_allele	TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	198	104	193	0	193	108	84	0	1
RIPK1	8737	ucsc.edu	37	6	3078114	3078114	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	42	4	56	0	26	26	0	0	0
CCDC90A	63933	broad.mit.edu;ucsc.edu	37	6	13800602	13800602	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	26	9	14	0	0	0	0	0	0
ALDH5A1	7915	ucsc.edu	37	6	24503526	24503526	+	Silent	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	33	6	33	0	15	15	0	0	0
ALDH5A1	7915	ucsc.edu	37	6	24503565	24503565	+	Silent	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	35	4	41	0	11	10	0	1	0
ZKSCAN3	80317	ucsc.edu	37	6	28329118	28329118	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	41	4	68	0	4	4	0	0	0
MUC21	394263	ucsc.edu	37	6	30955879	30955879	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	46	6	77	0	0	0	0	0	0
PRRC2A	7916	ucsc.edu	37	6	31591584	31591584	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	53	5	81	0	177	177	0	0	0
CLIC1	1192	ucsc.edu	37	6	31701358	31701358	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	75	7	78	0	1009	1008	1	0	0
SKIV2L	6499	ucsc.edu	37	6	31935749	31935749	+	Silent	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	41	5	61	0	51	51	0	0	0
GRM4	2914	ucsc.edu	37	6	34026770	34026770	+	Silent	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	38	4	53	0	0	0	0	0	0
GRM4	2914	ucsc.edu	37	6	34100802	34100802	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	36	4	44	0	0	0	0	0	0
SCUBE3	222663	ucsc.edu	37	6	35211769	35211769	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	40	4	58	0	1	1	0	0	0
DNAH8	1769	ucsc.edu	37	6	38883129	38883129	+	Silent	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	36	4	25	0	0	0	0	0	0
GLP1R	2740	ucsc.edu	37	6	39024192	39024192	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	35	4	52	0	0	0	0	0	0
UNC5CL	222643	ucsc.edu	37	6	41001685	41001685	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	37	4	40	0	25	25	0	0	0
MDFI	4188	broad.mit.edu;ucsc.edu	37	6	41614025	41614025	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	32	15	67	0	0	0	0	0	0
GUCA1A	2978	ucsc.edu	37	6	42147066	42147066	+	Silent	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	32	4	51	0	0	0	0	0	0
TBCC	6903	ucsc.edu	37	6	42713306	42713306	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	40	4	31	0	27	27	0	0	0
CUL7	9820	ucsc.edu	37	6	43019932	43019932	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	30	5	40	0	9	9	0	0	0
MRPL2	51069	ucsc.edu	37	6	43024174	43024174	+	Missense_Mutation	SNP	C	C	A	rs192442040	alternate_allele	TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	38	4	45	0	2	2	0	0	0
TDRD6	221400	ucsc.edu	37	6	46656738	46656738	+	Silent	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	34	4	54	0	0	0	0	0	0
PTCHD4	442213	ucsc.edu	37	6	47976749	47976749	+	Silent	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	50	6	54	0	74	74	0	0	0
PKHD1	5314	ucsc.edu	37	6	51915028	51915028	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	54	6	93	1	10	10	0	0	0
ICK	22858	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	6	52878690	52878690	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	48	23	49	0	10	6	4	0	0
PHF3	23469	ucsc.edu	37	6	64422649	64422649	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	38	4	40	0	57	57	0	0	0
COL19A1	1310	ucsc.edu	37	6	70745810	70745810	+	Silent	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	51	5	43	0	0	0	0	0	0
COL19A1	1310	ucsc.edu	37	6	70886439	70886439	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	48	5	44	0	0	0	0	0	0
SMAP1	60682	ucsc.edu	37	6	71566562	71566562	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	44	5	61	0	0	0	0	0	0
RIMS1	22999	ucsc.edu	37	6	73110401	73110401	+	Silent	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	92	10	105	0	1	1	0	0	0
PHIP	55023	ucsc.edu	37	6	79725394	79725394	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	35	4	32	0	5	5	0	0	0
PGM3	5238	ucsc.edu	37	6	83878967	83878967	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	62	6	53	0	10	10	0	0	0
TBX18	9096	ucsc.edu	37	6	85454021	85454021	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	41	5	38	0	0	0	0	0	0
CGA	1081	ucsc.edu	37	6	87795537	87795537	+	Silent	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	41	5	39	0	0	0	0	0	0
LYRM2	57226	ucsc.edu	37	6	90347062	90347062	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	48	5	30	0	0	0	0	0	0
HACE1	57531	ucsc.edu	37	6	105244631	105244631	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	42	4	35	0	0	0	0	0	0
SEC63	11231	ucsc.edu	37	6	108233959	108233959	+	Silent	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	51	6	25	0	53	53	0	0	0
SESN1	27244	ucsc.edu	37	6	109321802	109321802	+	Silent	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	37	4	56	0	21	21	0	0	0
TRAF3IP2	10758	ucsc.edu	37	6	111912589	111912589	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	59	7	106	0	48	48	0	0	0
LAMA4	3910	ucsc.edu	37	6	112513026	112513026	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	45	4	28	0	34	34	0	0	0
ROS1	6098	ucsc.edu	37	6	117737471	117737471	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	45	6	46	1	0	0	0	0	0
NKAIN2	154215	ucsc.edu	37	6	125112517	125112517	+	Silent	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	59	7	38	0	0	0	0	0	0
SLC18B1	116843	ucsc.edu	37	6	133097529	133097529	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	56	5	58	0	33	33	0	0	0
SLC2A12	154091	ucsc.edu	37	6	134328042	134328042	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	34	4	44	0	0	0	0	0	0
REPS1	85021	ucsc.edu	37	6	139238714	139238714	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	43	4	31	0	16	16	0	0	0
GPR126	57211	ucsc.edu	37	6	142738426	142738426	+	Silent	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	30	4	14	0	29	29	0	0	0
UTRN	7402	ucsc.edu	37	6	144863954	144863954	+	Silent	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	49	5	33	0	26	26	0	0	0
SHPRH	257218	ucsc.edu	37	6	146268739	146268739	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	43	4	54	0	6	6	0	0	0
AKAP12	9590	ucsc.edu	37	6	151674646	151674646	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	31	4	34	0	725	725	0	0	0
VIP	7432	ucsc.edu	37	6	153075305	153075305	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	36	5	31	0	0	0	0	0	0
CNKSR3	154043	ucsc.edu	37	6	154749271	154749271	+	Silent	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	50	5	31	0	0	0	0	0	0
TULP4	56995	ucsc.edu	37	6	158735128	158735128	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	37	5	51	0	6	6	0	0	0
TULP4	56995	ucsc.edu	37	6	158902249	158902249	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	52	5	60	0	13	13	0	0	0
FNDC1	84624	ucsc.edu	37	6	159672477	159672477	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	39	5	52	0	0	0	0	0	0
QKI	9444	ucsc.edu	37	6	163984742	163984742	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	62	6	94	0	1	1	0	0	0
RPS6KA2	6196	ucsc.edu	37	6	166923842	166923842	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	75	8	46	0	0	0	0	0	0
THBS2	7058	ucsc.edu	37	6	169623408	169623408	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	46	5	78	0	112	112	0	0	0
WDR27	253769	ucsc.edu	37	6	170033078	170033078	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	38	4	34	0	7	7	0	0	0
ADAP1	11033	ucsc.edu	37	7	939112	939112	+	Silent	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	41	4	55	0	50	50	0	0	0
INTS1	26173	ucsc.edu	37	7	1534499	1534499	+	Silent	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	14	4	10	0	112	112	0	0	0
TNRC18	84629	ucsc.edu	37	7	5347896	5347896	+	Silent	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	60	6	37	0	240	240	0	0	0
C1GALT1	56913	ucsc.edu	37	7	7278445	7278445	+	Silent	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	76	8	40	0	52	52	0	0	0
DNAH11	8701	ucsc.edu	37	7	21813431	21813431	+	Silent	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	42	4	25	0	0	0	0	0	0
EVX1	2128	ucsc.edu	37	7	27282682	27282682	+	Silent	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	35	4	26	0	0	0	0	0	0
DKFZP586I1420	0	ucsc.edu	37	7	30412250	30412250	+	RNA	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	29	4	22	0	69	69	0	0	0
DPY19L1	23333	ucsc.edu	37	7	34979808	34979808	+	Silent	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	36	4	17	0	49	49	0	0	0
DPY19L2P1	554236	ucsc.edu	37	7	35121293	35121293	+	RNA	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	35	5	26	0	22	22	0	0	0
ANLN	54443	hgsc.bcm.edu	37	7	36445998	36445998	+	Silent	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	184	11	106	1	6	6	0	0	0
AEBP1	165	ucsc.edu	37	7	44151453	44151453	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	37	4	21	0	0	0	0	0	0
NPC1L1	29881	ucsc.edu	37	7	44573422	44573422	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	43	4	40	0	0	0	0	0	0
CCM2	83605	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	7	45112359	45112359	+	Silent	SNP	C	C	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	174	41	93	0	101	79	22	0	0
ABCA13	154664	ucsc.edu	37	7	48313364	48313364	+	Silent	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	36	4	24	0	1	1	0	0	0
ABCA13	154664	ucsc.edu	37	7	48443419	48443419	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	63	6	37	0	6	6	0	0	0
IKZF1	10320	ucsc.edu	37	7	50450404	50450404	+	Silent	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	39	4	23	0	0	0	0	0	0
HIP1	3092	broad.mit.edu	37	7	75168684	75168684	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	805	8	554	0	0	0	0	0	0
PDK4	5166	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	95221864	95221872	+	In_Frame_Del	DEL	CCAATGTGG	CCAATGTGG	-	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	CCAATGTGG	CCAATGTGG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	204	78	170	0	0	0	0	0	0
TECPR1	25851	ucsc.edu	37	7	97874198	97874198	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	39	4	49	0	3	3	0	0	0
NPTX2	4885	ucsc.edu	37	7	98257786	98257786	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	41	4	26	0	1	1	0	0	0
ZKSCAN5	23660	broad.mit.edu	37	7	99123898	99123898	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	299	7	244	0	16	16	0	0	0
CYP3A4	1576	ucsc.edu	37	7	99375653	99375653	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	87	10	40	0	0	0	0	0	0
ZKSCAN1	7586	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	7	99621201	99621201	+	Silent	SNP	A	A	G	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	191	48	121	0	36	27	9	0	0
PVRIG	79037	ucsc.edu	37	7	99817650	99817650	+	Silent	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	39	4	27	0	8	8	0	0	0
C7orf61	402573	ucsc.edu	37	7	100054416	100054416	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	45	5	40	0	1	1	0	0	0
GIGYF1	64599	ucsc.edu	37	7	100282405	100282405	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	50	6	32	0	97	97	0	0	0
ZAN	7455	ucsc.edu	37	7	100363139	100363139	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	36	4	26	0	0	0	0	0	0
DPY19L2P2	349152	ucsc.edu	37	7	102835894	102835894	+	RNA	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	79	8	54	0	0	0	0	0	0
ORC5	5001	ucsc.edu	37	7	103805724	103805724	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	36	4	12	0	0	0	0	0	0
CNTNAP2	26047	hgsc.bcm.edu	37	7	147336337	147336337	+	Silent	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	154	8	84	0	0	0	0	0	0
SSPO	23145	ucsc.edu	37	7	149490481	149490481	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	35	4	45	0	0	0	0	0	0
SSPO	23145	ucsc.edu	37	7	149520902	149520902	+	Silent	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	28	4	11	0	0	0	0	0	0
LRRC61	65999	ucsc.edu	37	7	150034577	150034577	+	Silent	SNP	C	C	A	rs150477903	alternate_allele	TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	33	4	27	0	11	10	0	0	1
SLC4A2	6522	broad.mit.edu	37	7	150769158	150769158	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	376	12	266	0	266	266	0	0	0
FASTK	10922	ucsc.edu	37	7	150776889	150776889	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	21	4	18	0	251	251	0	0	0
ASB10	136371	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	7	150878302	150878302	+	Silent	SNP	C	C	G	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	64	17	45	0	0	0	0	0	0
CSGALNACT1	55790	ucsc.edu	37	8	19276262	19276262	+	Splice_Site	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	41	4	28	1	0	0	0	0	0
LGI3	203190	ucsc.edu	37	8	22005934	22005934	+	Silent	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	33	4	37	0	0	0	0	0	0
SLC25A37	51312	ucsc.edu	37	8	23429184	23429184	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	39	4	43	0	68	68	0	0	0
DOCK5	80005	ucsc.edu	37	8	25209258	25209258	+	Silent	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	30	4	23	0	0	0	0	0	0
DOCK5	80005	ucsc.edu	37	8	25209317	25209317	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	40	5	25	0	5	5	0	0	0
DOCK5	80005	ucsc.edu	37	8	25225745	25225745	+	Silent	SNP	C	C	A	rs190951623	alternate_allele	TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	31	4	46	0	8	8	0	0	0
ESCO2	157570	ucsc.edu	37	8	27650318	27650318	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	66	6	57	0	0	0	0	0	0
SCARA5	286133	ucsc.edu	37	8	27779223	27779223	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	22	4	21	0	0	0	0	0	0
FBXO16	157574	ucsc.edu	37	8	28321155	28321155	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	38	4	60	0	5	5	0	0	0
DUSP4	1846	ucsc.edu	37	8	29207784	29207784	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	51	6	59	0	0	0	0	0	0
ADAM2	2515	ucsc.edu	37	8	39691519	39691519	+	Splice_Site	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	35	4	43	0	0	0	0	0	0
FNTA	2339	ucsc.edu	37	8	42940371	42940371	+	Silent	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	45	5	45	0	79	79	0	0	0
ARFGEF1	10565	ucsc.edu	37	8	68139751	68139751	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	32	6	62	0	18	18	0	0	0
ARFGEF1	10565	ucsc.edu	37	8	68188299	68188299	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	54	6	38	0	18	18	0	0	0
NCOA2	10499	ucsc.edu	37	8	71050438	71050438	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	40	4	53	0	0	0	0	0	0
TRPA1	8989	ucsc.edu	37	8	72970052	72970052	+	Splice_Site	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	45	5	38	0	0	0	0	0	0
LY96	23643	ucsc.edu	37	8	74941272	74941272	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	51	5	48	0	1	1	0	0	0
PAG1	55824	ucsc.edu	37	8	81897495	81897495	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	40	4	55	0	4	4	0	0	0
MATN2	4147	ucsc.edu	37	8	99045845	99045845	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	30	4	21	0	59	59	0	0	0
RNF19A	25897	ucsc.edu	37	8	101273809	101273809	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	72	7	55	0	24	24	0	0	0
PKHD1L1	93035	ucsc.edu	37	8	110497315	110497315	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	39	4	38	0	0	0	0	0	0
COL14A1	7373	ucsc.edu	37	8	121219272	121219272	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	40	4	50	0	2	2	0	0	0
MTBP	27085	ucsc.edu	37	8	121518976	121518976	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	36	4	37	0	0	0	0	0	0
FAM91A1	157769	ucsc.edu	37	8	124790945	124790945	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	47	5	50	0	27	27	0	0	0
PHF20L1	51105	ucsc.edu	37	8	133854998	133854998	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	60	6	58	0	22	22	0	0	0
TG	7038	ucsc.edu	37	8	133895165	133895165	+	Silent	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	53	5	56	0	1	1	0	0	0
WISP1	8840	ucsc.edu	37	8	134225181	134225181	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	42	4	43	0	0	0	0	0	0
WISP1	8840	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	8	134225321	134225321	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	82	41	141	0	0	0	0	0	0
WISP1	8840	ucsc.edu	37	8	134239896	134239896	+	Silent	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	81	8	85	0	0	0	0	0	0
TRAPPC9	83696	ucsc.edu	37	8	140743318	140743318	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	29	4	45	0	102	102	0	0	0
GLI4	2738	ucsc.edu	37	8	144358724	144358724	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	26	4	36	0	33	33	0	0	0
CPSF1	29894	ucsc.edu	37	8	145620371	145620371	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	30	4	38	0	48	48	0	0	0
LRRC14	9684	ucsc.edu	37	8	145746755	145746755	+	Missense_Mutation	SNP	C	C	A	rs140815919	byfrequency;alternate_allele	TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	38	4	58	0	17	17	0	0	0
DOCK8	81704	ucsc.edu	37	9	422063	422063	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	43	4	51	0	11	11	0	0	0
RFX3	5991	ucsc.edu	37	9	3266294	3266294	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	41	4	37	0	0	0	0	0	0
CNTLN	54875	ucsc.edu	37	9	17135237	17135237	+	Silent	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	42	4	31	0	5	5	0	0	0
ADAMTSL1	92949	ucsc.edu	37	9	18770748	18770748	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	35	4	53	0	0	0	0	0	0
FOCAD	54914	ucsc.edu	37	9	20944768	20944768	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	31	4	27	1	0	0	0	0	0
RPP25L	138716	ucsc.edu	37	9	34611218	34611218	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	53	5	75	0	73	73	0	0	0
DNAJB5	25822	ucsc.edu	37	9	34996863	34996863	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	37	6	50	0	0	0	0	0	0
NPR2	4882	ucsc.edu	37	9	35792452	35792452	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	39	4	48	0	11	11	0	0	0
TRPM3	80036	ucsc.edu	37	9	73240178	73240178	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	42	4	48	0	10	10	0	0	0
PRUNE2	158471	ucsc.edu	37	9	79325671	79325671	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	38	4	48	0	59	59	0	0	0
PRUNE2	158471	ucsc.edu	37	9	79326040	79326040	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	31	4	34	0	48	48	0	0	0
SPATA31D1	389763	ucsc.edu	37	9	84609882	84609882	+	Silent	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	47	5	67	0	0	0	0	0	0
C9orf170	401535	ucsc.edu	37	9	89763719	89763719	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	41	4	43	0	0	0	0	0	0
CTSL3P	392360	ucsc.edu	37	9	90388158	90388158	+	RNA	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	38	4	51	0	0	0	0	0	0
TMOD1	7111	ucsc.edu	37	9	100328227	100328227	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	68	7	96	0	0	0	0	0	0
TEX10	54881	ucsc.edu	37	9	103066113	103066113	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	31	5	45	0	2	2	0	0	0
PALM2-AKAP2	445815	ucsc.edu	37	9	112900603	112900603	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	51	5	73	0	21	21	0	0	0
TXNDC8	255220	ucsc.edu	37	9	113096571	113096571	+	Silent	SNP	G	G	T	rs142457636	alternate_allele	TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	43	4	42	0	0	0	0	0	0
SVEP1	79987	ucsc.edu	37	9	113220820	113220820	+	Silent	SNP	C	C	A	rs10980398	byfrequency;alternate_allele	TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	32	4	27	0	0	0	0	0	0
KIAA1958	158405	ucsc.edu	37	9	115337529	115337529	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	37	4	58	0	1	1	0	0	0
FKBP15	23307	ucsc.edu	37	9	115931544	115931544	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	42	4	49	0	62	62	0	0	0
POLE3	54107	ucsc.edu	37	9	116172535	116172535	+	Silent	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	26	4	49	0	85	85	0	0	0
COL27A1	85301	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	9	117047026	117047026	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	98	35	138	0	36	13	22	0	1
COL27A1	85301	ucsc.edu	37	9	117051034	117051034	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	43	4	65	0	0	0	0	0	0
ASTN2	23245	ucsc.edu	37	9	119625888	119625888	+	Silent	SNP	G	G	T	rs144963407	alternate_allele	TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	51	5	88	0	29	29	0	0	0
ODF2	4957	ucsc.edu	37	9	131221845	131221845	+	Splice_Site	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	42	4	45	0	0	0	0	0	0
WDR34	89891	ucsc.edu	37	9	131397497	131397497	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	30	4	52	0	242	242	0	0	0
SURF1	6834	ucsc.edu	37	9	136219439	136219439	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	37	4	51	0	248	247	1	0	0
C9orf96	169436	ucsc.edu	37	9	136262346	136262346	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	35	4	46	0	0	0	0	0	0
ADAMTSL2	9719	ucsc.edu	37	9	136406015	136406015	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	31	4	47	0	0	0	0	0	0
BRD3	8019	ucsc.edu	37	9	136901159	136901159	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	28	4	44	0	1	1	0	0	0
COL5A1	1289	ucsc.edu	37	9	137717648	137717648	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	59	6	67	1	0	0	0	0	0
OBP2A	29991	ucsc.edu	37	9	138438730	138438730	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	43	5	45	0	0	0	0	0	0
C9orf163	158055	ucsc.edu	37	9	139379439	139379439	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	31	4	53	0	0	0	0	0	0
FAM69B	138311	ucsc.edu	37	9	139616408	139616408	+	Silent	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	51	6	81	1	5	5	0	0	0
EDF1	8721	ucsc.edu	37	9	139757900	139757900	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	53	5	36	0	0	0	0	0	0
TRAF2	7186	ucsc.edu	37	9	139815664	139815664	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	48	6	93	0	0	0	0	0	0
ABCA2	20	ucsc.edu	37	9	139909142	139909142	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	29	4	33	0	0	0	0	0	0
SAPCD2	89958	ucsc.edu	37	9	139960790	139960790	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	19	4	30	0	1	1	0	0	0
TPRN	286262	ucsc.edu	37	9	140086934	140086934	+	Silent	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	15	5	18	0	55	55	0	0	0
TMEM203	94107	broad.mit.edu;ucsc.edu	37	9	140099503	140099503	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	44	24	67	0	76	33	43	0	0
EHMT1	79813	ucsc.edu	37	9	140646789	140646789	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	43	6	34	0	0	0	0	0	0
PLCXD1	55344	ucsc.edu	37	X	215795	215795	+	Silent	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	39	4	68	0	3	3	0	0	0
PPP2R3B	28227	ucsc.edu	37	X	299340	299340	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	12	5	34	0	0	0	0	0	0
ASMTL	8623	ucsc.edu	37	X	1546862	1546862	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	31	4	82	0	0	0	0	0	0
MXRA5	25878	ucsc.edu	37	X	3228925	3228925	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	44	5	49	0	147	147	0	0	0
MXRA5	25878	ucsc.edu	37	X	3236011	3236011	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	33	4	37	0	66	66	0	0	0
TLR7	51284	ucsc.edu	37	X	12904067	12904067	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	40	5	55	0	0	0	0	0	0
SYAP1	94056	ucsc.edu	37	X	16774811	16774811	+	Silent	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	42	4	20	0	72	72	0	0	0
CDKL5	6792	ucsc.edu	37	X	18626950	18626950	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	49	5	44	0	15	15	0	0	0
MAP3K15	389840	ucsc.edu	37	X	19443786	19443786	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	31	4	36	0	1	1	0	0	0
SH3KBP1	30011	ucsc.edu	37	X	19564043	19564043	+	Silent	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	43	4	55	0	0	0	0	0	0
SH3KBP1	30011	ucsc.edu	37	X	19626104	19626104	+	Silent	SNP	G	G	T	rs199869591	alternate_allele	TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	40	5	40	0	9	9	0	0	0
KLHL15	80311	ucsc.edu	37	X	24024657	24024657	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	62	6	47	1	5	5	0	0	0
ZFX	7543	ucsc.edu	37	X	24228419	24228419	+	Silent	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	58	7	70	0	8	8	0	0	0
PDK3	5165	ucsc.edu	37	X	24517002	24517002	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	42	4	42	0	4	4	0	0	0
PDK3	5165	ucsc.edu	37	X	24546298	24546298	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	41	4	43	0	0	0	0	0	0
FAM47A	158724	ucsc.edu	37	X	34149265	34149265	+	Silent	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	41	4	55	0	0	0	0	0	0
CXorf22	170063	ucsc.edu	37	X	35966541	35966541	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	62	6	55	0	2	2	0	0	0
CHDC2	286464	ucsc.edu	37	X	36103430	36103430	+	Splice_Site	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	44	5	49	0	0	0	0	0	0
BCOR	54880	ucsc.edu	37	X	39916483	39916483	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	36	4	53	0	28	28	0	0	0
MAOA	4128	ucsc.edu	37	X	43590623	43590623	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	25	4	19	0	0	0	0	0	0
MAOB	4129	ucsc.edu	37	X	43637987	43637987	+	Splice_Site	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	43	4	13	0	0	0	0	0	0
KDM6A	7403	hgsc.bcm.edu;broad.mit.edu	37	X	44920581	44920581	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	15	14	11	0	0	0	0	0	0
ZNF674	641339	ucsc.edu	37	X	46388305	46388305	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	38	4	64	0	12	12	0	0	0
RBM10	8241	ucsc.edu	37	X	47035949	47035949	+	Silent	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	55	6	58	0	57	57	0	0	0
CFP	5199	ucsc.edu	37	X	47485775	47485775	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	24	4	18	0	1	1	0	0	0
WAS	7454	ucsc.edu	37	X	48542297	48542297	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	36	4	69	0	8	8	0	0	0
PQBP1	10084	ucsc.edu	37	X	48759774	48759774	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	29	5	32	0	70	70	0	0	0
PPP1R3F	89801	ucsc.edu	37	X	49143394	49143394	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	40	6	46	0	3	3	0	0	0
KDM5C	8242	ucsc.edu	37	X	53231037	53231037	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	34	4	36	0	0	0	0	0	0
KDM5C	8242	ucsc.edu	37	X	53245135	53245135	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	39	4	47	0	48	48	0	0	0
IQSEC2	23096	ucsc.edu	37	X	53267445	53267445	+	Silent	SNP	C	C	A	rs199643273	alternate_allele	TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	32	4	34	0	11	11	0	0	0
HUWE1	10075	ucsc.edu	37	X	53565352	53565352	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	25	4	18	0	225	222	1	2	0
HUWE1	10075	ucsc.edu	37	X	53589182	53589182	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	30	4	21	0	86	86	0	0	0
HUWE1	10075	ucsc.edu	37	X	53672263	53672263	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	52	5	27	0	0	0	0	0	0
AMER1	139285	ucsc.edu	37	X	63410365	63410365	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	28	4	46	0	2	2	0	0	0
AMER1	139285	ucsc.edu	37	X	63410917	63410917	+	Silent	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	31	5	41	0	0	0	0	0	0
DLG3	1741	ucsc.edu	37	X	69712122	69712122	+	Silent	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	38	5	44	0	0	0	0	0	0
NHSL2	340527	ucsc.edu	37	X	71359259	71359259	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	45	4	42	0	0	0	0	0	0
PHKA1	5255	ucsc.edu	37	X	71872454	71872454	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	38	4	22	0	4	4	0	0	0
TSIX	9383	ucsc.edu	37	X	73046165	73046165	+	RNA	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	44	5	37	0	1	1	0	0	0
XIST	7503	ucsc.edu	37	X	73062793	73062793	+	RNA	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	33	4	47	0	0	0	0	0	0
XIST	7503	ucsc.edu	37	X	73071597	73071597	+	RNA	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	57	6	40	0	0	0	0	0	0
RLIM	51132	ucsc.edu	37	X	73815740	73815740	+	Silent	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	51	5	35	0	12	12	0	0	0
BRWD3	254065	ucsc.edu	37	X	79947347	79947347	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	38	4	45	0	4	4	0	0	0
XRCC6P5	0	broad.mit.edu;ucsc.edu	37	X	98975171	98975171	+	RNA	SNP	C	C	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	17	13	29	0	463	463	0	0	0
RNF128	79589	ucsc.edu	37	X	105970590	105970590	+	Silent	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	41	4	53	0	91	91	0	0	0
MORC4	79710	ucsc.edu	37	X	106186405	106186405	+	Silent	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	75	9	77	0	34	34	0	0	0
COL4A5	1287	ucsc.edu	37	X	107858227	107858227	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	32	4	40	0	12	12	0	0	0
GUCY2F	2986	ucsc.edu	37	X	108696811	108696811	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	41	4	50	0	0	0	0	0	0
TRPC5	7224	ucsc.edu	37	X	111095656	111095656	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	43	4	50	0	0	0	0	0	0
GLUD2	2747	ucsc.edu	37	X	120182940	120182940	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	83	2	104	0	797	7	790	0	0
THOC2	57187	ucsc.edu	37	X	122756617	122756617	+	Silent	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	42	4	31	0	0	0	0	0	0
STAG2	10735	ucsc.edu	37	X	123156491	123156491	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	40	4	36	0	37	37	0	0	0
TENM1	10178	ucsc.edu	37	X	123785895	123785895	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	59	6	41	0	1	1	0	0	0
OCRL	4952	ucsc.edu	37	X	128722229	128722229	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	35	4	27	0	1	1	0	0	0
XPNPEP2	7512	ucsc.edu	37	X	128902401	128902401	+	Silent	SNP	C	C	A	rs2235446	alternate_allele	TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	23	4	49	0	0	0	0	0	0
IGSF1	3547	ucsc.edu	37	X	130415841	130415841	+	Silent	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	39	5	42	0	0	0	0	0	0
HS6ST2	90161	ucsc.edu	37	X	131803216	131803216	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	28	5	23	0	0	0	0	0	0
TFDP3	51270	ucsc.edu	37	X	132352072	132352072	+	Silent	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	45	6	59	0	0	0	0	0	0
SAGE1	55511	ucsc.edu	37	X	134988214	134988214	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	40	4	56	0	0	0	0	0	0
GPR112	139378	ucsc.edu	37	X	135426950	135426950	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	30	4	17	0	0	0	0	0	0
GPR112	139378	ucsc.edu	37	X	135494469	135494469	+	Missense_Mutation	SNP	G	G	T	rs139763945	alternate_allele	TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	52	6	55	0	0	0	0	0	0
SLITRK2	84631	ucsc.edu	37	X	144906277	144906277	+	Silent	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	83	8	102	0	0	0	0	0	0
TMEM257	9142	ucsc.edu	37	X	144909304	144909304	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	58	6	51	0	0	0	0	0	0
PASD1	139135	ucsc.edu	37	X	150832731	150832731	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	36	4	57	0	0	0	0	0	0
ATP2B3	492	ucsc.edu	37	X	152825367	152825367	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	19	4	42	0	0	0	0	0	0
FLNA	2316	ucsc.edu	37	X	153588810	153588810	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	51	6	66	0	200	200	0	0	0
EMD	2010	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	X	153609241	153609241	+	Splice_Site	DEL	G	G	-	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	45	40	70	0	0	0	0	0	0
PLXNA3	55558	ucsc.edu	37	X	153698078	153698078	+	Silent	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	31	4	43	0	46	46	0	0	0
SRSF7	6432	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	38978383	38978384	+	Missense_Mutation	DNP	GC	GC	AA	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	GC	GC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	87	32	128	0	0	0	0	0	0
