Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	TTotCov	TVarCov	NTotCov	NVarCov	Trna_tot	Trna_ref	Trna_var	Trna_alt1	Trna_alt2
SCNN1D	6339	ucsc.edu	37	1	1221652	1221652	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	26	4	22	0	0	0	0	0	0
SCNN1D	6339	ucsc.edu	37	1	1226706	1226706	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	43	4	52	0	0	0	0	0	0
KIAA1751	85452	bcgsc.ca	37	1	1890604	1890604	+	Silent	SNP	C	C	A	rs75297543	alternate_allele	TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	113	8	81	0	0	0	0	0	0
MORN1	79906	ucsc.edu	37	1	2305963	2305963	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	12	4	33	0	2	2	0	0	0
PEX10	5192	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	2341814	2341814	+	Silent	SNP	A	A	C	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	61	25	47	0	1	1	0	0	0
TAS1R1	80835	ucsc.edu	37	1	6635186	6635186	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	63	6	60	0	0	0	0	0	0
SLC2A7	155184	bcgsc.ca	37	1	9079292	9079292	+	Silent	SNP	G	G	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	118	8	69	0	0	0	0	0	0
KIF1B	23095	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	10431203	10431203	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	180	45	101	0	0	0	0	0	0
DRAXIN	374946	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	11775243	11775243	+	Silent	SNP	C	C	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	171	29	126	0	2	2	0	0	0
MFN2	9927	bcgsc.ca	37	1	12059084	12059084	+	Silent	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	314	12	268	0	90	90	0	0	0
LOC440563	0	bcgsc.ca	37	1	13183615	13183615	+	Silent	SNP	T	T	C	rs200176197		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	50	17	94	9	406	406	0	0	0
CASP9	842	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	15844625	15844625	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	203	36	128	0	55	43	12	0	0
CLCNKB	1188	ucsc.edu	37	1	16371078	16371078	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	39	4	22	0	0	0	0	0	0
CROCCP2	84809	broad.mit.edu	37	1	16945311	16945311	+	RNA	SNP	G	G	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	12	3	15	0	28	23	5	0	0
EIF4G3	8672	hgsc.bcm.edu;broad.mit.edu	37	1	21188793	21188793	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	83	6	82	0	22	21	1	0	0
EIF4G3	8672	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	21226358	21226358	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	212	50	300	1	17	17	0	0	0
EIF4G3	8672	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	21226427	21226427	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	164	38	206	0	0	0	0	0	0
HSPG2	3339	ucsc.edu	37	1	22178288	22178288	+	Silent	SNP	G	G	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	43	4	93	0	0	0	0	0	0
HSPG2	3339	bcgsc.ca	37	1	22192287	22192287	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	87	8	121	0	22	22	0	0	0
CDC42	998	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	22413230	22413230	+	Silent	SNP	C	C	G	rs143448220	alternate_allele	TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	285	72	383	0	304	207	97	0	0
CDC42	998	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	22413329	22413329	+	Silent	SNP	C	C	G	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	245	62	306	0	236	173	63	0	0
ZBTB40	9923	bcgsc.ca	37	1	22843852	22843852	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	122	8	212	0	9	9	0	0	0
SRRM1	10250	ucsc.edu	37	1	24993332	24993332	+	Missense_Mutation	SNP	C	C	A	rs142044452	alternate_allele	TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	40	4	60	0	48	48	0	0	0
MAN1C1	57134	ucsc.edu	37	1	26073246	26073246	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	38	4	42	0	64	64	0	0	0
PAFAH2	5051	bcgsc.ca	37	1	26310573	26310573	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	210	10	253	3	0	0	0	0	0
UBXN11	91544	ucsc.edu	37	1	26612416	26612416	+	Silent	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	43	5	98	1	8	8	0	0	0
EYA3	2140	bcgsc.ca	37	1	28354307	28354307	+	Silent	SNP	G	G	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	133	9	154	2	0	0	0	0	0
SDC3	9672	ucsc.edu	37	1	31347264	31347264	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	42	4	81	0	25	25	0	0	0
PUM1	9698	ucsc.edu	37	1	31447634	31447634	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	47	5	43	0	42	42	0	0	0
AK2	204	bcgsc.ca	37	1	33478891	33478891	+	Missense_Mutation	SNP	C	C	A	rs200179721	alternate_allele	TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	81	6	112	1	127	127	0	0	0
CSMD2	114784	ucsc.edu	37	1	34046461	34046461	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	39	5	71	0	0	0	0	0	0
RSPO1	284654	ucsc.edu	37	1	38078593	38078593	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	43	4	68	0	0	0	0	0	0
EPHA10	284656	ucsc.edu	37	1	38187480	38187480	+	Silent	SNP	G	G	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	29	5	39	0	2	2	0	0	0
INPP5B	3633	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	38328025	38328025	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	131	19	134	0	10	6	4	0	0
INPP5B	3633	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	38338748	38338748	+	Silent	SNP	G	G	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	188	31	207	0	9	8	1	0	0
KIAA0754	643314	bcgsc.ca	37	1	39876200	39876200	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	241	11	216	0	5	5	0	0	0
BMP8A	353500	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	39991443	39991443	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	171	35	220	0	0	0	0	0	0
HIVEP3	59269	bcgsc.ca	37	1	42047172	42047172	+	Silent	SNP	C	C	A	rs145651869	byfrequency;alternate_allele	TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	90	6	98	0	2	2	0	0	0
C1orf50	79078	ucsc.edu	37	1	43241041	43241041	+	Silent	SNP	C	C	A	rs200795156	alternate_allele	TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	50	5	26	0	8	8	0	0	0
PTPRF	5792	broad.mit.edu;bcgsc.ca	37	1	44063474	44063474	+	Silent	SNP	C	C	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	27	15	25	0	348	159	189	0	0
PTPRF	5792	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	44063522	44063522	+	Silent	SNP	C	C	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	30	17	27	0	428	193	234	0	1
RPS15AP10	728963	ucsc.edu	37	1	46111696	46111696	+	RNA	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	36	4	34	0	0	0	0	0	0
TSPAN1	10103	bcgsc.ca	37	1	46650944	46650944	+	Silent	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	342	12	378	0	516	516	0	0	0
POMGNT1	55624	ucsc.edu	37	1	46659046	46659046	+	Silent	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	27	4	52	0	79	79	0	0	0
CYP4Z2P	163720	ucsc.edu	37	1	47366068	47366068	+	RNA	SNP	G	G	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	46	4	27	0	0	0	0	0	0
TMEM48	55706	broad.mit.edu	37	1	54298190	54298192	+	In_Frame_Del	DEL	TTA	TTA	-	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	TTA	TTA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	156	5	58	0	0	0	0	0	0
DOCK7	85440	ucsc.edu	37	1	62970306	62970306	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	29	4	45	0	0	0	0	0	0
ANGPTL3	27329	ucsc.edu	37	1	63069639	63069639	+	Splice_Site	SNP	G	G	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	39	4	45	0	0	0	0	0	0
LRRC7	57554	ucsc.edu	37	1	70505207	70505207	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	47	5	42	0	0	0	0	0	0
FUBP1	8880	ucsc.edu	37	1	78426138	78426138	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	40	4	24	0	64	64	0	0	0
CCDC18	343099	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	93705376	93705376	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	53	8	62	0	3	3	0	0	0
DPYD	1806	ucsc.edu	37	1	97700417	97700417	+	Silent	SNP	G	G	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	38	4	29	0	0	0	0	0	0
COL11A1	1301	ucsc.edu	37	1	103379925	103379925	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	42	4	40	1	0	0	0	0	0
CELSR2	1952	bcgsc.ca	37	1	109793108	109793108	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	78	6	112	0	14	14	0	0	0
CELSR2	1952	ucsc.edu	37	1	109801639	109801639	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	40	4	30	0	16	16	0	0	0
CYB561D1	284613	bcgsc.ca	37	1	110038447	110038447	+	Silent	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	335	12	298	0	15	15	0	0	0
KCNA10	3744	bcgsc.ca	37	1	111060292	111060292	+	Missense_Mutation	SNP	C	C	A	rs146624318	byfrequency;alternate_allele	TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	149	9	169	1	0	0	0	0	0
ADORA3	140	bcgsc.ca	37	1	112106516	112106516	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	254	13	200	0	0	0	0	0	0
DDX20	11218	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	112309171	112309171	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	123	38	85	0	8	6	2	0	0
DDX20	11218	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	112309315	112309315	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	132	39	70	2	10	10	0	0	0
ST7L	54879	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	113124686	113124686	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	129	35	84	1	2	2	0	0	0
ST7L	54879	ucsc.edu	37	1	113143418	113143418	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	45	5	38	0	0	0	0	0	0
MOV10	4343	ucsc.edu	37	1	113239251	113239251	+	Splice_Site	SNP	G	G	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	31	4	47	0	0	0	0	0	0
HSD3B1	3283	bcgsc.ca	37	1	120057076	120057076	+	Silent	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	160	10	234	0	1	1	0	0	0
PHGDH	26227	ucsc.edu	37	1	120283017	120283017	+	Silent	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	30	4	57	0	0	0	0	0	0
TXNIP	10628	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	145440057	145440059	+	In_Frame_Del	DEL	AAG	AAG	-	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	AAG	AAG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	684	383	453	0	0	0	0	0	0
ACP6	51205	ucsc.edu	37	1	147141957	147141957	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	35	5	26	0	1	1	0	0	0
SF3B4	10262	ucsc.edu	37	1	149895486	149895486	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	35	4	29	0	115	115	0	0	0
ANXA9	8416	bcgsc.ca	37	1	150967098	150967098	+	Silent	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	310	11	253	1	112	111	0	0	1
PIP5K1A	8394	bcgsc.ca	37	1	151219439	151219439	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	144	9	78	0	0	0	0	0	0
POGZ	23126	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	151377387	151377387	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	190	44	144	0	30	19	11	0	0
FLG	2312	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	152281276	152281276	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	1229	541	1055	0	0	0	0	0	0
FLG	2312	bcgsc.ca	37	1	152282312	152282312	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	807	22	647	1	1	1	0	0	0
INTS3	65123	bcgsc.ca	37	1	153736360	153736360	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	105	8	92	1	1	1	0	0	0
DENND4B	9909	bcgsc.ca	37	1	153912139	153912139	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	351	14	201	0	14	14	0	0	0
NUP210L	91181	bcgsc.ca	37	1	154072549	154072549	+	Silent	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	359	17	174	0	0	0	0	0	0
CHRNB2	1141	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	154544111	154544111	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	281	167	225	1	0	0	0	0	0
DCST1	149095	bcgsc.ca	37	1	155018959	155018959	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	83	8	68	0	2	2	0	0	0
GON4L	54856	broad.mit.edu;bcgsc.ca	37	1	155723185	155723185	+	Silent	SNP	G	G	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	278	13	239	0	12	12	0	0	0
GON4L	54856	broad.mit.edu;bcgsc.ca	37	1	155723194	155723194	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	251	13	233	0	0	0	0	0	0
INSRR	3645	ucsc.edu	37	1	156810682	156810682	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	37	4	30	0	0	0	0	0	0
INSRR	3645	ucsc.edu	37	1	156821819	156821819	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	41	4	52	0	0	0	0	0	0
PEAR1	375033	bcgsc.ca	37	1	156880487	156880487	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	78	7	85	0	4	4	0	0	0
OR10Z1	128368	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	158576303	158576303	+	Silent	SNP	C	C	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	239	34	171	0	0	0	0	0	0
OR6N1	128372	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	158735810	158735810	+	Silent	SNP	G	G	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	231	119	185	0	0	0	0	0	0
PYHIN1	149628	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	158943473	158943473	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	105	54	67	0	0	0	0	0	0
FCGR3A	2214	bcgsc.ca	37	1	161512951	161512951	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	122	8	85	0	34	34	0	0	0
ATF6	22926	bcgsc.ca	37	1	161762110	161762110	+	Silent	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	337	14	215	1	0	0	0	0	0
POGK	57645	bcgsc.ca	37	1	166819236	166819236	+	Silent	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	138	8	92	0	114	114	0	0	0
F5	2153	broad.mit.edu	37	1	169493136	169493136	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	254	9	135	0	0	0	0	0	0
SELP	6403	bcgsc.ca	37	1	169578789	169578789	+	Missense_Mutation	SNP	C	C	A	rs201496591	alternate_allele	TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	193	10	107	0	5	5	0	0	0
C1orf112	55732	bcgsc.ca	37	1	169773249	169773249	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	149	10	82	0	1	1	0	0	0
FMO2	2327	bcgsc.ca	37	1	171165933	171165933	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	198	10	139	0	0	0	0	0	0
FASLG	356	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	172634825	172634825	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	139	11	81	0	0	0	0	0	0
CEP350	9857	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	180044161	180044161	+	Silent	SNP	C	C	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	34	8	21	0	0	0	0	0	0
CACNA1E	777	bcgsc.ca	37	1	181690902	181690902	+	Silent	SNP	G	G	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	204	11	165	2	0	0	0	0	0
NPL	80896	bcgsc.ca	37	1	182787971	182787971	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	155	9	113	0	24	24	0	0	0
PLA2G4A	5321	ucsc.edu	37	1	186839629	186839629	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	53	6	43	0	5	5	0	0	0
DENND1B	163486	ucsc.edu	37	1	197614855	197614855	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	20	4	16	0	15	15	0	0	0
PKP1	5317	ucsc.edu	37	1	201253024	201253024	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	34	4	41	0	0	0	0	0	0
PFKFB2	5208	ucsc.edu	37	1	207236717	207236717	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	38	4	31	0	7	7	0	0	0
PLXNA2	5362	bcgsc.ca	37	1	208205047	208205047	+	Silent	SNP	G	G	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	87	7	104	1	16	15	0	0	1
PLXNA2	5362	bcgsc.ca	37	1	208207859	208207859	+	Silent	SNP	G	G	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	70	6	79	0	10	10	0	0	0
GALNT2	2590	bcgsc.ca	37	1	230391063	230391063	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	102	7	117	1	30	30	0	0	0
RYR2	6262	ucsc.edu	37	1	237551445	237551445	+	Silent	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	33	4	56	0	0	0	0	0	0
C1orf101	257044	ucsc.edu	37	1	244747236	244747236	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	55	6	49	0	0	0	0	0	0
OR2L8	391190	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	248112585	248112585	+	Silent	SNP	G	G	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	270	24	253	0	0	0	0	0	0
TUBB8	347688	ucsc.edu	37	10	94042	94042	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	48	4	59	0	0	0	0	0	0
FAM171A1	221061	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	15256140	15256140	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	244	27	177	0	3	3	0	0	0
MTPAP	55149	bcgsc.ca	37	10	30602567	30602567	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	339	14	178	1	27	27	0	0	0
CUL2	8453	bcgsc.ca	37	10	35300778	35300778	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	173	11	133	0	0	0	0	0	0
ANKRD30A	91074	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	37451603	37451603	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	254	51	164	1	0	0	0	0	0
CSGALNACT2	55454	broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	43654255	43654255	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	67	10	75	0	14	9	5	0	0
C10orf10	11067	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	45472882	45472882	+	Silent	SNP	G	G	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	100	24	153	0	92	70	22	0	0
ANK3	288	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	61830133	61830133	+	Silent	SNP	G	G	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	65	16	97	0	0	0	0	0	0
ANK3	288	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	61830689	61830689	+	Nonsense_Mutation	SNP	G	G	C	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	157	41	193	0	0	0	0	0	0
TET1	80312	bcgsc.ca	37	10	70451547	70451547	+	Silent	SNP	G	G	T	rs62638663	byfrequency;alternate_allele	TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	239	11	266	1	0	0	0	0	0
SRGN	5552	ucsc.edu	37	10	70856964	70856964	+	Silent	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	44	5	61	0	18	18	0	0	0
COL13A1	1305	ucsc.edu	37	10	71640308	71640308	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	33	4	48	0	0	0	0	0	0
COL13A1	1305	ucsc.edu	37	10	71648059	71648059	+	Splice_Site	SNP	G	G	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	27	4	25	0	0	0	0	0	0
PALD1	27143	ucsc.edu	37	10	72301233	72301233	+	Silent	SNP	G	G	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	39	4	41	0	0	0	0	0	0
PRF1	5551	ucsc.edu;bcgsc.ca	37	10	72360284	72360284	+	Silent	SNP	G	G	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	39	6	38	0	0	0	0	0	0
PRF1	5551	ucsc.edu;bcgsc.ca	37	10	72360526	72360526	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	54	6	58	0	2	2	0	0	0
CHST3	9469	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	73765714	73765714	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	147	9	175	0	3	3	0	0	0
CDHR1	92211	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	85956359	85956359	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	109	66	155	0	0	0	0	0	0
SLIT1	6585	ucsc.edu	37	10	98764566	98764566	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	47	5	77	1	1	1	0	0	0
ARHGAP19	84986	ucsc.edu	37	10	99052375	99052375	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	36	4	80	0	2	2	0	0	0
CHUK	1147	ucsc.edu	37	10	101977869	101977869	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	33	4	56	0	18	18	0	0	0
PSD	5662	ucsc.edu	37	10	104176404	104176404	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	39	4	61	0	0	0	0	0	0
CALHM1	255022	broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	105215149	105215149	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	54	18	69	0	0	0	0	0	0
TRUB1	142940	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	116734920	116734920	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	112	24	120	0	18	15	3	0	0
FGFR2	2263	bcgsc.ca	37	10	123310845	123310845	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	114	7	153	0	22	22	0	0	0
FAM53B	9679	ucsc.edu	37	10	126311914	126311914	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	41	4	66	1	11	11	0	0	0
DOCK1	1793	ucsc.edu	37	10	129160422	129160422	+	Silent	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	31	5	55	0	31	31	0	0	0
MKI67	4288	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	129910532	129910532	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	84	11	159	0	22	21	1	0	0
TTC40	54777	broad.mit.edu	37	10	134648258	134648258	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	19	4	48	0	0	0	0	0	0
MTG1	92170	broad.mit.edu;bcgsc.ca	37	10	135209677	135209677	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	233	15	368	0	0	0	0	0	0
BET1L	51272	ucsc.edu	37	11	205384	205384	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	29	4	56	1	22	22	0	0	0
BET1L	51272	ucsc.edu	37	11	205433	205433	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	37	4	85	1	18	18	0	0	0
HRAS	3265	ucsc.edu	37	11	532715	532715	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	40	4	79	0	98	98	0	0	0
IRF7	3665	ucsc.edu	37	11	612738	612738	+	Silent	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	31	5	93	0	8	8	0	0	0
MUC2	4583	ucsc.edu	37	11	1081557	1081557	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	28	4	51	0	0	0	0	0	0
MUC5B	727897	ucsc.edu	37	11	1276040	1276040	+	Silent	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	32	4	47	0	0	0	0	0	0
NUP98	4928	ucsc.edu	37	11	3700903	3700903	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	39	4	67	0	16	16	0	0	0
OR51G2	81282	broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	4936273	4936273	+	Silent	SNP	G	G	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	27	11	50	0	0	0	0	0	0
OR56A4	120793	ucsc.edu	37	11	6023703	6023703	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	36	5	62	0	0	0	0	0	0
CNGA4	1262	ucsc.edu	37	11	6265396	6265396	+	Silent	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	41	4	78	0	0	0	0	0	0
ILK	3611	ucsc.edu	37	11	6629396	6629396	+	Silent	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	51	5	75	0	35	35	0	0	0
LMO1	4004	ucsc.edu	37	11	8248630	8248630	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	38	4	87	0	0	0	0	0	0
NRIP3	56675	bcgsc.ca	37	11	9007342	9007342	+	Silent	SNP	G	G	T	rs61756060	byfrequency;alternate_allele	TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	110	8	199	1	2	1	0	1	0
IPO7	10527	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	9451343	9451343	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	26	12	51	0	19	7	12	0	0
WEE1	7465	bcgsc.ca	37	11	9607035	9607035	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	123	9	134	0	15	15	0	0	0
MRVI1	10335	ucsc.edu	37	11	10628298	10628298	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	22	4	19	0	0	0	0	0	0
COPB1	1315	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	14501121	14501121	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	100	73	134	0	0	0	0	0	0
ZDHHC13	54503	ucsc.edu	37	11	19169180	19169180	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	13	4	13	0	23	23	0	0	0
SLC5A12	159963	bcgsc.ca	37	11	26734188	26734188	+	Silent	SNP	C	C	A	rs140957763	byfrequency;alternate_allele	TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	280	12	302	2	0	0	0	0	0
TRIM44	54765	ucsc.edu	37	11	35747683	35747683	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	24	4	35	0	12	12	0	0	0
RAG2	5897	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	36614896	36614896	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	44	22	98	0	0	0	0	0	0
AMBRA1	55626	ucsc.edu	37	11	46419242	46419242	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	39	4	81	0	12	12	0	0	0
ARHGAP1	392	ucsc.edu	37	11	46703616	46703616	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	37	5	112	0	60	60	0	0	0
MADD	8567	bcgsc.ca	37	11	47299747	47299747	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	254	12	366	0	21	21	0	0	0
OR8J3	81168	ucsc.edu	37	11	55904289	55904289	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	58	6	66	0	0	0	0	0	0
OR9G9	504191	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	56468116	56468116	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	174	22	191	0	0	0	0	0	0
CTNND1	1500	ucsc.edu	37	11	57583417	57583417	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	41	5	19	0	69	69	0	0	0
LPXN	9404	broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	58295114	58295114	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	38	6	68	0	4	3	1	0	0
OR4D11	219986	hgsc.bcm.edu;broad.mit.edu	37	11	59271133	59271133	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	99	5	181	0	0	0	0	0	0
SLC15A3	51296	ucsc.edu	37	11	60708708	60708708	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	17	3	42	0	13	11	2	0	0
DDB1	1642	ucsc.edu	37	11	61067644	61067644	+	Silent	SNP	G	G	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	52	5	72	0	216	216	0	0	0
INTS5	80789	ucsc.edu;bcgsc.ca	37	11	62417394	62417394	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	68	7	120	1	10	10	0	0	0
HNRNPUL2	221092	bcgsc.ca	37	11	62482791	62482791	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	104	7	136	0	194	194	0	0	0
WDR74	54663	ucsc.edu	37	11	62603264	62603264	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	29	4	42	0	17	17	0	0	0
WDR74	54663	ucsc.edu	37	11	62606596	62606596	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	45	5	83	0	1	1	0	0	0
MIR3680-1	100500917	bcgsc.ca	37	11	63278532	63278532	+	RNA	SNP	C	C	G	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	58	11	77	0	0	0	0	0	0
RAB1B	81876	ucsc.edu	37	11	66039910	66039910	+	Silent	SNP	G	G	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	35	4	81	0	297	296	1	0	0
BBS1	582	ucsc.edu	37	11	66291194	66291194	+	Splice_Site	SNP	G	G	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	31	4	49	0	1	1	0	0	0
SPTBN2	6712	ucsc.edu	37	11	66472118	66472118	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	29	5	36	0	16	16	0	0	0
GSTP1	2950	ucsc.edu	37	11	67352042	67352042	+	Splice_Site	SNP	G	G	C	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	61	1	43	0	12	12	0	0	0
LRP5	4041	broad.mit.edu;bcgsc.ca	37	11	68197137	68197137	+	Silent	SNP	C	C	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	502	19	128	0	340	333	7	0	0
FOLR2	2350	ucsc.edu	37	11	71932252	71932252	+	Silent	SNP	G	G	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	39	4	39	0	7	7	0	0	0
ARRB1	408	ucsc.edu	37	11	74992126	74992126	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	23	4	27	0	0	0	0	0	0
MYO7A	4647	bcgsc.ca	37	11	76867817	76867817	+	Silent	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	77	7	123	0	0	0	0	0	0
NARS2	79731	hgsc.bcm.edu	37	11	78154732	78154732	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	73	4	81	0	7	7	0	0	0
FAM181B	220382	broad.mit.edu	37	11	82444012	82444012	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	10	4	19	0	1	1	0	0	0
CREBZF	58487	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	85375684	85375684	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	78	41	151	0	14	4	10	0	0
EED	8726	ucsc.edu	37	11	85963189	85963189	+	Splice_Site	SNP	G	G	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	36	4	49	0	0	0	0	0	0
CEP57	9702	ucsc.edu	37	11	95561116	95561116	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	43	4	44	0	17	17	0	0	0
MTMR2	8898	broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	95621408	95621408	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	19	7	29	0	7	3	4	0	0
YAP1	10413	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	102080284	102080284	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	114	62	139	0	2	0	2	0	0
YAP1	10413	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	102098224	102098224	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	50	12	60	0	62	46	16	0	0
MMP20	9313	ucsc.edu	37	11	102487543	102487543	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	39	4	36	0	0	0	0	0	0
ATM	472	ucsc.edu	37	11	108115744	108115744	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	35	4	42	0	0	0	0	0	0
HTR3A	3359	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	113856896	113856896	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	132	82	217	1	0	0	0	0	0
PCSK7	9159	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	117097976	117097976	+	Silent	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	138	41	231	2	16	11	5	0	0
DSCAML1	57453	ucsc.edu	37	11	117376368	117376368	+	Silent	SNP	C	C	A	rs141977780	alternate_allele	TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	50	5	89	0	0	0	0	0	0
FXYD6-FXYD2	100533181	ucsc.edu	37	11	117711864	117711864	+	Missense_Mutation	SNP	G	G	T	rs143269006	alternate_allele	TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	31	4	57	0	0	0	0	0	0
TECTA	7007	bcgsc.ca	37	11	121031059	121031059	+	Silent	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	210	11	260	1	0	0	0	0	0
PATE2	399967	ucsc.edu	37	11	125647349	125647349	+	Silent	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	45	5	64	0	0	0	0	0	0
RPUSD4	84881	ucsc.edu	37	11	126073516	126073516	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	35	4	67	0	8	8	0	0	0
ZBTB44	29068	ucsc.edu	37	11	130131766	130131766	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	40	4	57	1	7	7	0	0	0
IGSF9B	22997	ucsc.edu	37	11	133801379	133801379	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	38	4	88	0	0	0	0	0	0
NCAPD3	23310	ucsc.edu	37	11	134048809	134048809	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	41	4	42	0	7	7	0	0	0
CACNA1C	775	ucsc.edu	37	12	2763021	2763021	+	Silent	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	38	4	60	0	5	5	0	0	0
VWF	7450	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	6167128	6167128	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	105	31	176	0	44	42	2	0	0
GPR162	27239	bcgsc.ca	37	12	6935830	6935830	+	Silent	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	197	10	267	2	1	1	0	0	0
ATN1	1822	ucsc.edu	37	12	7045623	7045623	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	25	4	62	0	134	134	0	0	0
C1R	715	ucsc.edu	37	12	7188198	7188198	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	40	4	75	1	22	22	0	0	0
PIK3C2G	5288	bcgsc.ca	37	12	18435657	18435657	+	Silent	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	284	12	253	1	0	0	0	0	0
SLCO1B1	10599	ucsc.edu	37	12	21353480	21353480	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	34	4	40	0	0	0	0	0	0
FGFR1OP2	26127	bcgsc.ca	37	12	27110593	27110593	+	Silent	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	154	8	129	0	28	28	0	0	0
CAPRIN2	65981	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	30906661	30906661	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	169	15	179	0	1	1	0	0	0
FGD4	121512	ucsc.edu	37	12	32735361	32735361	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	48	5	84	0	2	2	0	0	0
SLC2A13	114134	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	40422219	40422219	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	184	39	166	0	2	2	0	0	0
ANO6	196527	bcgsc.ca	37	12	45796981	45796981	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	119	9	88	0	49	49	0	0	0
SLC38A4	55089	ucsc.edu	37	12	47160564	47160564	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	40	4	18	0	0	0	0	0	0
DDX23	9416	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	49231830	49231830	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	232	92	241	0	86	42	44	0	0
TUBA1B	10376	bcgsc.ca	37	12	49523319	49523319	+	Silent	SNP	G	G	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	152	8	170	0	1431	1429	1	1	0
SPATS2	65244	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	49916614	49916614	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	80	37	65	0	18	10	8	0	0
DIP2B	57609	hgsc.bcm.edu	37	12	51019819	51019819	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	142	8	137	0	0	0	0	0	0
RARG	5916	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	53607847	53607847	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	365	139	412	0	2	2	0	0	0
ATF7	11016	ucsc.edu	37	12	53994782	53994782	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	42	5	40	0	8	8	0	0	0
LRP1	4035	ucsc.edu	37	12	57599175	57599175	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	29	5	46	0	51	51	0	0	0
ARHGAP9	64333	bcgsc.ca	37	12	57872358	57872358	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	165	10	174	0	1	1	0	0	0
MARS	4141	bcgsc.ca	37	12	57883711	57883711	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	331	14	303	1	72	72	0	0	0
LRIG3	121227	bcgsc.ca	37	12	59281595	59281595	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	166	8	154	0	11	11	0	0	0
DPY19L2	283417	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	64061939	64061939	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	133	22	167	0	0	0	0	0	0
LEMD3	23592	ucsc.edu	37	12	65564766	65564766	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	55	6	73	1	27	27	0	0	0
LLPH	84298	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	66522754	66522754	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	228	34	175	0	51	47	4	0	0
ZDHHC17	23390	ucsc.edu	37	12	77236755	77236755	+	Silent	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	45	5	29	0	1	1	0	0	0
CCDC38	120935	ucsc.edu	37	12	96260964	96260964	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	51	6	55	0	0	0	0	0	0
AMDHD1	144193	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	96354342	96354342	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	178	65	157	0	0	0	0	0	0
C12orf42	374470	broad.mit.edu	37	12	103699754	103699754	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	358	7	286	0	0	0	0	0	0
C12orf45	121053	ucsc.edu	37	12	105381974	105381974	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	34	4	24	0	10	10	0	0	0
ALDH1L2	160428	bcgsc.ca	37	12	105428114	105428114	+	Silent	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	92	8	82	0	0	0	0	0	0
FOXN4	121643	ucsc.edu	37	12	109724463	109724463	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	27	4	25	0	0	0	0	0	0
ALDH2	217	bcgsc.ca	37	12	112228248	112228248	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	64	7	76	0	0	0	0	0	0
TPCN1	53373	ucsc.edu;bcgsc.ca	37	12	113698238	113698238	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	54	7	70	1	16	16	0	0	0
RNFT2	84900	bcgsc.ca	37	12	117191806	117191806	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	120	7	132	0	2	2	0	0	0
KSR2	283455	broad.mit.edu	37	12	118293234	118293234	+	Silent	SNP	T	T	C	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	100	3	106	0	1	1	0	0	0
P2RX4	5025	broad.mit.edu;bcgsc.ca	37	12	121648006	121648006	+	Silent	SNP	C	C	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	23	9	19	0	4	4	0	0	0
ANAPC5	51433	bcgsc.ca	37	12	121773411	121773411	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	184	10	182	0	112	112	0	0	0
TMEM132D	121256	ucsc.edu	37	12	130184836	130184836	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	37	4	35	0	0	0	0	0	0
CENPJ	55835	bcgsc.ca	37	13	25466881	25466881	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	288	12	266	1	6	6	0	0	0
MTUS2	23281	ucsc.edu	37	13	29600791	29600791	+	Silent	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	41	5	55	0	0	0	0	0	0
PDS5B	23047	ucsc.edu;bcgsc.ca	37	13	33232408	33232408	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	38	6	28	0	16	16	0	0	0
PDS5B	23047	bcgsc.ca	37	13	33320181	33320181	+	Silent	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	132	9	77	1	25	25	0	0	0
STARD13	90627	bcgsc.ca	37	13	33703997	33703997	+	Missense_Mutation	SNP	C	C	A	rs151157731	alternate_allele	TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	120	9	126	0	5	5	0	0	0
LPAR6	10161	ucsc.edu	37	13	48986107	48986107	+	Silent	SNP	G	G	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	33	4	24	0	2	2	0	0	0
UTP14C	9724	hgsc.bcm.edu;broad.mit.edu	37	13	52603705	52603705	+	Silent	SNP	G	G	C	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	83	5	77	0	25	25	0	0	0
OLFM4	10562	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	53624805	53624805	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	129	18	84	0	0	0	0	0	0
MYCBP2	23077	ucsc.edu	37	13	77900647	77900647	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	51	5	41	0	2	2	0	0	0
RBM26	64062	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	79945132	79945132	+	Silent	SNP	C	C	T	rs199797508		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	352	47	266	0	34	31	3	0	0
COL4A1	1282	ucsc.edu	37	13	110835382	110835382	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	41	4	43	0	54	54	0	0	0
TEP1	7011	ucsc.edu	37	14	20852043	20852043	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	24	4	40	0	0	0	0	0	0
METTL3	56339	ucsc.edu	37	14	21969207	21969207	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	41	4	63	1	15	15	0	0	0
MYH6	4624	ucsc.edu	37	14	23871959	23871959	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	35	4	73	0	0	0	0	0	0
NRL	4901	ucsc.edu	37	14	24551832	24551832	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	34	4	50	0	1	1	0	0	0
RNF31	55072	ucsc.edu	37	14	24617494	24617494	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	35	4	52	0	28	28	0	0	0
TINF2	26277	ucsc.edu	37	14	24709838	24709838	+	Missense_Mutation	SNP	G	G	T	rs199422313		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	60	6	81	0	60	60	0	0	0
CIDEB	27141	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	24775203	24775203	+	Silent	SNP	G	G	C	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	104	24	127	0	33	29	4	0	0
ADCY4	196883	ucsc.edu	37	14	24792290	24792290	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	37	5	51	0	0	0	0	0	0
STRN3	29966	ucsc.edu	37	14	31364871	31364871	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	38	4	35	0	0	0	0	0	0
INSM2	84684	ucsc.edu	37	14	36004982	36004982	+	Silent	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	27	4	48	0	0	0	0	0	0
FANCM	57697	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	45642339	45642339	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	88	55	108	0	1	1	0	0	0
HIF1A	3091	ucsc.edu	37	14	62193489	62193489	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	43	4	48	0	47	47	0	0	0
ESR2	2100	bcgsc.ca	37	14	64727168	64727168	+	Silent	SNP	G	G	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	182	11	235	0	0	0	0	0	0
MTHFD1	4522	bcgsc.ca	37	14	64882195	64882195	+	Silent	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	213	10	226	1	15	15	0	0	0
ZBTB1	22890	hgsc.bcm.edu	37	14	64989477	64989477	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	38	3	24	0	39	39	0	0	0
GPHN	10243	ucsc.edu	37	14	67147897	67147897	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	36	5	50	0	0	0	0	0	0
PLEKHH1	57475	ucsc.edu	37	14	68029006	68029006	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	28	5	57	0	6	6	0	0	0
SLC8A3	6547	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	70633987	70633987	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	149	87	205	2	1	0	1	0	0
PAPLN	89932	ucsc.edu;bcgsc.ca	37	14	73718794	73718794	+	Silent	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	26	5	27	0	2	2	0	0	0
PAPLN	89932	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	73720491	73720491	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	135	30	157	1	1	1	0	0	0
MLH3	27030	bcgsc.ca	37	14	75485588	75485588	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	185	8	123	0	18	18	0	0	0
FLRT2	23768	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	86088747	86088747	+	Missense_Mutation	SNP	G	G	C	rs199966508	alternate_allele	TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	405	57	367	1	0	0	0	0	0
EML5	161436	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	89161727	89161727	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	77	17	44	0	1	1	0	0	0
GOLGA5	9950	ucsc.edu	37	14	93275864	93275864	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	35	4	40	0	0	0	0	0	0
BTBD7	55727	ucsc.edu	37	14	93762395	93762395	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	47	5	48	0	11	11	0	0	0
DLK1	8788	ucsc.edu	37	14	101200546	101200546	+	Silent	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	38	4	118	0	0	0	0	0	0
TECPR2	9895	ucsc.edu	37	14	102900645	102900645	+	Silent	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	32	4	80	0	2	2	0	0	0
CDC42BPB	9578	ucsc.edu	37	14	103412005	103412005	+	Silent	SNP	G	G	T	rs140036206	alternate_allele	TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	53	5	140	0	0	0	0	0	0
MARK3	4140	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	103932113	103932113	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	56	9	94	0	31	23	8	0	0
MARK3	4140	ucsc.edu	37	14	103932725	103932725	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	19	3	46	0	50	38	12	0	0
INF2	64423	ucsc.edu	37	14	105181176	105181176	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	11	4	17	0	51	51	0	0	0
ADSSL1	122622	ucsc.edu	37	14	105207040	105207040	+	Silent	SNP	C	C	A	rs12894569	byfrequency;alternate_allele	TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	38	4	128	0	0	0	0	0	0
CEP170B	283638	ucsc.edu	37	14	105346735	105346735	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	24	4	33	0	31	31	0	0	0
AHNAK2	113146	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	105409722	105409722	+	Silent	SNP	G	G	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	126	88	333	0	4	4	0	0	0
NPAP1	23742	ucsc.edu	37	15	24922092	24922092	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	46	5	63	0	0	0	0	0	0
FAN1	22909	ucsc.edu	37	15	31197602	31197602	+	Silent	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	43	4	66	0	5	5	0	0	0
RYR3	6263	ucsc.edu	37	15	34077910	34077910	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	34	4	106	0	0	0	0	0	0
RASGRP1	10125	ucsc.edu	37	15	38786961	38786961	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	31	4	39	0	0	0	0	0	0
THBS1	7057	ucsc.edu	37	15	39879561	39879561	+	Silent	SNP	G	G	T	rs150499229	byfrequency;alternate_allele	TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	41	4	76	0	0	0	0	0	0
THBS1	7057	ucsc.edu;bcgsc.ca	37	15	39882727	39882727	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	56	7	68	0	0	0	0	0	0
EIF2AK4	440275	ucsc.edu	37	15	40325002	40325002	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	37	4	38	0	0	0	0	0	0
RMDN3	55177	ucsc.edu	37	15	41037212	41037212	+	Missense_Mutation	SNP	C	C	A	rs199637427	alternate_allele	TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	40	4	46	1	8	8	0	0	0
ZFYVE19	84936	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	41099974	41099974	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	30	18	43	0	15	8	7	0	0
ZFYVE19	84936	broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	41100015	41100015	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	37	10	39	0	5	2	3	0	0
ZFYVE19	84936	ucsc.edu	37	15	41101605	41101605	+	Splice_Site	SNP	G	G	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	23	4	40	0	0	0	0	0	0
INO80	54617	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	41384347	41384347	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	42	19	65	0	8	2	6	0	0
CDAN1	146059	ucsc.edu	37	15	43028193	43028193	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	42	4	68	0	5	5	0	0	0
EID1	23741	ucsc.edu;bcgsc.ca	37	15	49170898	49170898	+	Silent	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	62	6	40	0	86	86	0	0	0
TRPM7	54822	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	50906430	50906430	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	50	24	80	2	13	5	8	0	0
DMXL2	23312	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	51773559	51773559	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	185	88	195	1	4	1	3	0	0
MYO5C	55930	ucsc.edu	37	15	52575069	52575069	+	Silent	SNP	G	G	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	44	4	72	0	0	0	0	0	0
NARG2	79664	ucsc.edu	37	15	60720877	60720877	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	53	6	64	0	0	0	0	0	0
ITGA11	22801	ucsc.edu	37	15	68605201	68605201	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	42	4	57	0	0	0	0	0	0
ANP32A	8125	ucsc.edu	37	15	69072810	69072810	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	56	6	75	0	1	1	0	0	0
HMG20A	10363	ucsc.edu	37	15	77759450	77759450	+	Missense_Mutation	SNP	G	G	T	rs142534001	alternate_allele	TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	50	5	39	0	16	16	0	0	0
CTSH	1512	ucsc.edu	37	15	79217713	79217713	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	37	5	46	0	498	498	0	0	0
WDR73	84942	ucsc.edu	37	15	85186785	85186785	+	Silent	SNP	G	G	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	15	4	30	1	16	16	0	0	0
ZNF592	9640	ucsc.edu	37	15	85341233	85341233	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	35	4	67	0	27	27	0	0	0
ALPK3	57538	ucsc.edu	37	15	85400572	85400572	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	40	4	55	0	0	0	0	0	0
AKAP13	11214	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	86269660	86269660	+	Silent	SNP	C	C	G	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	130	31	143	0	23	18	5	0	0
PRC1	9055	ucsc.edu	37	15	91510300	91510300	+	RNA	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	47	5	67	1	22	22	0	0	0
PRC1	9055	broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	91524227	91524227	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	125	15	161	0	54	41	13	0	0
SYNM	23336	ucsc.edu	37	15	99669970	99669970	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	38	4	68	0	6	6	0	0	0
LUC7L	55692	bcgsc.ca	37	16	239231	239231	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	230	9	388	0	14	14	0	0	0
PIGQ	9091	hgsc.bcm.edu;bcgsc.ca	37	16	633273	633273	+	Missense_Mutation	SNP	C	C	A	rs141151147	alternate_allele	TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	144	10	268	2	9	9	0	0	0
WDR90	197335	bcgsc.ca	37	16	700092	700092	+	Silent	SNP	G	G	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	235	10	469	3	10	10	0	0	0
TPSG1	25823	ucsc.edu	37	16	1271796	1271796	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	38	4	45	0	0	0	0	0	0
ZNF598	90850	bcgsc.ca	37	16	2048282	2048282	+	Missense_Mutation	SNP	C	C	A	rs192058732	by1000genomes;alternate_allele	TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	192	9	259	1	28	28	0	0	0
PKD1	5310	ucsc.edu	37	16	2140729	2140729	+	Silent	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	36	4	53	0	13	13	0	0	0
CCNF	899	ucsc.edu	37	16	2482985	2482985	+	Silent	SNP	G	G	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	30	4	54	0	20	19	0	0	1
SRRM2	23524	ucsc.edu	37	16	2812301	2812301	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	37	4	69	0	105	105	0	0	0
SRRM2	23524	ucsc.edu	37	16	2817808	2817808	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	46	5	99	1	183	183	0	0	0
NMRAL1	57407	ucsc.edu	37	16	4516382	4516382	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	46	5	71	0	22	22	0	0	0
NAGPA	51172	ucsc.edu	37	16	5077984	5077984	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	27	4	69	0	0	0	0	0	0
ABAT	18	hgsc.bcm.edu	37	16	8844348	8844348	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	134	7	219	0	6	6	0	0	0
CIITA	4261	ucsc.edu	37	16	10989259	10989259	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	41	4	45	0	3	3	0	0	0
SMG1	23049	bcgsc.ca	37	16	18826794	18826794	+	Silent	SNP	G	G	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	143	9	135	0	36	36	0	0	0
LOC81691	0	ucsc.edu	37	16	20843572	20843572	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	21	4	34	0	0	0	0	0	0
OTOA	146183	ucsc.edu	37	16	21721323	21721323	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	31	4	60	0	0	0	0	0	0
TNRC6A	27327	bcgsc.ca	37	16	24831573	24831573	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	145	9	221	1	26	26	0	0	0
ZKSCAN2	342357	ucsc.edu	37	16	25266694	25266694	+	Missense_Mutation	SNP	C	C	A	rs148836306	alternate_allele	TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	32	4	50	0	0	0	0	0	0
RABEP2	79874	bcgsc.ca	37	16	28926078	28926078	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	95	9	149	1	21	21	0	0	0
ZNF689	115509	ucsc.edu	37	16	30616236	30616236	+	Silent	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	46	5	78	0	3	3	0	0	0
ZNF689	115509	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	30616559	30616559	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	70	19	153	0	9	7	2	0	0
SRCAP	10847	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	30749163	30749163	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	84	24	136	0	24	15	9	0	0
ZNF629	23361	bcgsc.ca	37	16	30794182	30794182	+	Silent	SNP	G	G	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	141	8	175	1	18	10	8	0	0
MYLK3	91807	bcgsc.ca	37	16	46764575	46764575	+	Silent	SNP	G	G	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	124	8	147	0	0	0	0	0	0
DNAJA2	10294	bcgsc.ca	37	16	47005399	47005399	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	265	13	312	0	66	66	0	0	0
ABCC11	85320	ucsc.edu	37	16	48234294	48234294	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	39	4	76	0	0	0	0	0	0
ABCC11	85320	ucsc.edu	37	16	48256671	48256671	+	Silent	SNP	G	G	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	40	4	61	0	0	0	0	0	0
IRX6	79190	ucsc.edu	37	16	55359009	55359009	+	Silent	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	41	4	58	0	0	0	0	0	0
BBS2	583	broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	56518732	56518732	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	75	19	78	0	7	5	2	0	0
MT1M	4499	bcgsc.ca	37	16	56667682	56667682	+	Silent	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	239	12	397	0	0	0	0	0	0
SLC12A3	6559	ucsc.edu	37	16	56906332	56906332	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	41	4	97	0	0	0	0	0	0
NLRC5	84166	ucsc.edu	37	16	57060304	57060304	+	Silent	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	41	5	83	0	3	3	0	0	0
CNGB1	1258	ucsc.edu	37	16	57957266	57957266	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	43	5	72	1	1	1	0	0	0
CNGB1	1258	ucsc.edu	37	16	57993847	57993847	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	25	4	26	0	0	0	0	0	0
CMTM2	146225	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	16	66614056	66614056	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	114	8	164	0	0	0	0	0	0
KCTD19	146212	ucsc.edu	37	16	67337158	67337158	+	Silent	SNP	G	G	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	27	4	74	0	0	0	0	0	0
ATP6V0D1	9114	ucsc.edu	37	16	67473180	67473180	+	Silent	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	40	5	77	0	1	1	0	0	0
ATP6V0D1	9114	ucsc.edu	37	16	67478431	67478431	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	43	4	62	0	0	0	0	0	0
ENKD1	84080	ucsc.edu	37	16	67700071	67700071	+	Silent	SNP	G	G	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	39	4	101	0	12	12	0	0	0
TERF2	7014	ucsc.edu	37	16	69400762	69400762	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	32	4	57	0	17	17	0	0	0
AARS	16	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	70316659	70316659	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	141	76	202	0	22	9	13	0	0
SF3B3	23450	ucsc.edu	37	16	70602966	70602966	+	Silent	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	35	4	39	0	34	34	0	0	0
HYDIN	54768	broad.mit.edu;bcgsc.ca	37	16	70896078	70896078	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	34	9	46	0	0	0	0	0	0
ZNF19	7567	bcgsc.ca	37	16	71509645	71509645	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	88	7	94	0	0	0	0	0	0
DHX38	9785	ucsc.edu	37	16	72130289	72130289	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	43	4	50	0	31	31	0	0	0
GCSH	2653	ucsc.edu	37	16	81121261	81121261	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	39	5	47	0	0	0	0	0	0
PLCG2	5336	ucsc.edu	37	16	81972429	81972429	+	Silent	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	31	4	64	0	8	8	0	0	0
OSGIN1	29948	ucsc.edu	37	16	83994323	83994323	+	Silent	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	30	5	65	0	5	5	0	0	0
CTU2	348180	bcgsc.ca	37	16	88780139	88780139	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	131	8	207	0	8	8	0	0	0
RILP	83547	ucsc.edu	37	17	1551760	1551760	+	Silent	SNP	G	G	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	41	4	76	0	4	4	0	0	0
PRPF8	10594	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	1586885	1586885	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	79	5	138	0	60	55	5	0	0
WDR81	124997	ucsc.edu	37	17	1639351	1639351	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	33	4	92	0	12	12	0	0	0
RPA1	6117	ucsc.edu	37	17	1792089	1792089	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	52	5	80	0	51	51	0	0	0
ZZEF1	23140	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	3926086	3926086	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	40	12	79	0	14	7	7	0	0
PLD2	5338	ucsc.edu	37	17	4726141	4726141	+	Silent	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	30	4	58	0	11	11	0	0	0
PFN1	5216	bcgsc.ca	37	17	4850024	4850024	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	98	8	177	0	1103	1103	0	0	0
KIF1C	10749	ucsc.edu	37	17	4923880	4923880	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	37	5	106	0	129	129	0	0	0
RABEP1	9135	ucsc.edu	37	17	5266290	5266290	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	35	4	58	0	11	11	0	0	0
NLRP1	22861	ucsc.edu	37	17	5485300	5485300	+	Silent	SNP	G	G	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	40	4	74	1	13	13	0	0	0
KIAA0753	9851	ucsc.edu	37	17	6493254	6493254	+	Silent	SNP	G	G	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	36	4	83	0	4	4	0	0	0
TEKT1	83659	bcgsc.ca	37	17	6703404	6703404	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	148	10	308	2	0	0	0	0	0
BCL6B	255877	ucsc.edu	37	17	6930320	6930320	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	37	4	104	0	4	4	0	0	0
ELP5	23587	ucsc.edu	37	17	7156093	7156093	+	Silent	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	32	4	62	0	0	0	0	0	0
TMEM256	254863	ucsc.edu	37	17	7306379	7306379	+	RNA	SNP	G	G	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	42	5	97	0	26	26	0	0	0
SPEM1	374768	ucsc.edu	37	17	7323847	7323847	+	Silent	SNP	G	G	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	30	4	79	0	0	0	0	0	0
FXR2	9513	ucsc.edu	37	17	7497259	7497259	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	52	5	98	0	29	29	0	0	0
AURKB	9212	ucsc.edu	37	17	8110900	8110900	+	Silent	SNP	G	G	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	37	4	61	0	0	0	0	0	0
PIK3R5	23533	ucsc.edu	37	17	8790470	8790470	+	Silent	SNP	G	G	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	41	4	87	1	4	4	0	0	0
PIRT	644139	ucsc.edu	37	17	10728758	10728758	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	34	4	86	0	0	0	0	0	0
ELAC2	60528	ucsc.edu	37	17	12898138	12898138	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	31	4	102	0	25	25	0	0	0
TRPV2	51393	broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	16330054	16330054	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	40	14	110	0	3	3	0	0	0
MPRIP	23164	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	17046031	17046031	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	55	16	106	0	0	0	0	0	0
TOM1L2	146691	ucsc.edu	37	17	17772656	17772656	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	33	4	58	0	0	0	0	0	0
MYO15A	51168	ucsc.edu	37	17	18061951	18061951	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	45	4	122	1	0	0	0	0	0
MYO15A	51168	ucsc.edu	37	17	18075034	18075034	+	Silent	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	34	4	56	0	1	1	0	0	0
ZNF286B	729288	broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	18565401	18565401	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	16	5	37	0	0	0	0	0	0
ZNF286B	729288	broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	18565413	18565413	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	14	6	35	1	0	0	0	0	0
ALDH3A1	218	ucsc.edu	37	17	19643722	19643722	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	39	4	130	0	22	22	0	0	0
RPL23A	6147	ucsc.edu	37	17	27047900	27047900	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	59	5	108	0	1	1	0	0	0
MYO18A	399687	bcgsc.ca	37	17	27448938	27448938	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	104	8	150	1	37	37	0	0	0
EFCAB5	374786	bcgsc.ca	37	17	28407943	28407943	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	116	9	103	0	0	0	0	0	0
PLXDC1	57125	ucsc.edu	37	17	37224006	37224006	+	RNA	SNP	G	G	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	44	4	50	0	6	6	0	0	0
IKZF3	22806	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	37949078	37949078	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	88	12	86	0	4	2	2	0	0
KRT33B	3884	ucsc.edu	37	17	39525979	39525979	+	Silent	SNP	G	G	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	35	4	55	0	0	0	0	0	0
HAP1	9001	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	39887800	39887800	+	Silent	SNP	G	G	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	103	66	151	0	0	0	0	0	0
ACLY	47	bcgsc.ca	37	17	40035063	40035063	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	122	8	196	0	178	177	0	0	1
DHX58	79132	bcgsc.ca	37	17	40257882	40257882	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	158	10	153	0	9	9	0	0	0
UBTF	7343	broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	42293042	42293042	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	120	13	205	0	46	41	5	0	0
ADAM11	4185	ucsc.edu	37	17	42847391	42847391	+	Missense_Mutation	SNP	G	G	T	rs143931720	alternate_allele	TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	35	4	63	0	0	0	0	0	0
KANSL1	284058	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	44248974	44248974	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	277	119	304	0	0	0	0	0	0
EFCAB13	124989	ucsc.edu	37	17	45452155	45452155	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	44	5	39	0	0	0	0	0	0
OSBPL7	114881	ucsc.edu	37	17	45897626	45897626	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	41	4	39	0	3	3	0	0	0
SKAP1	8631	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	46239837	46239837	+	Silent	SNP	C	C	G	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	70	6	58	0	0	0	0	0	0
UBE2Z	65264	ucsc.edu	37	17	47004458	47004458	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	41	4	37	0	70	70	0	0	0
KAT7	11143	bcgsc.ca	37	17	47893193	47893193	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	162	9	143	0	28	28	0	0	0
COL1A1	1277	ucsc.edu	37	17	48267057	48267057	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	40	4	55	0	54	54	0	0	0
AKAP1	8165	bcgsc.ca	37	17	55184066	55184066	+	Missense_Mutation	SNP	C	C	A	rs147545374	alternate_allele	TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	93	8	114	0	35	35	0	0	0
MARCH10	162333	bcgsc.ca	37	17	60814292	60814292	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	368	14	463	0	0	0	0	0	0
ERN1	2081	ucsc.edu	37	17	62135189	62135189	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	30	5	65	0	13	13	0	0	0
ABCA6	23460	bcgsc.ca	37	17	67109769	67109769	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	129	9	73	0	0	0	0	0	0
KIF19	124602	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	72338804	72338804	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	81	41	113	0	0	0	0	0	0
KIF19	124602	ucsc.edu	37	17	72349699	72349699	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	40	4	53	0	0	0	0	0	0
CASKIN2	57513	ucsc.edu	37	17	73504316	73504316	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	36	4	45	0	0	0	0	0	0
MGAT5B	146664	bcgsc.ca	37	17	74936565	74936565	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	105	8	177	1	0	0	0	0	0
TNRC6C	57690	bcgsc.ca	37	17	76060883	76060883	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	85	8	105	0	4	4	0	0	0
DNAH17	8632	ucsc.edu	37	17	76487603	76487603	+	Silent	SNP	G	G	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	35	4	32	0	0	0	0	0	0
DNAH17	8632	bcgsc.ca	37	17	76510967	76510967	+	Silent	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	170	10	190	2	0	0	0	0	0
LGALS3BP	3959	ucsc.edu;bcgsc.ca	37	17	76970878	76970878	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	31	8	52	0	0	0	0	0	0
CBX4	8535	ucsc.edu	37	17	77809186	77809186	+	Silent	SNP	G	G	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	37	4	48	0	3	3	0	0	0
CCDC40	55036	ucsc.edu	37	17	78061462	78061462	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	41	4	78	0	1	1	0	0	0
EIF4A3	9775	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	78120725	78120725	+	Silent	SNP	C	C	G	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	42	9	55	1	59	47	12	0	0
AZI1	22994	hgsc.bcm.edu;bcgsc.ca	37	17	79165116	79165116	+	Missense_Mutation	SNP	C	C	A	rs138682079	alternate_allele	TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	130	8	205	0	10	10	0	0	0
ENTHD2	146705	ucsc.edu	37	17	79205428	79205428	+	Silent	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	33	4	20	0	15	15	0	0	0
P4HB	5034	ucsc.edu;bcgsc.ca	37	17	79803581	79803581	+	Silent	SNP	G	G	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	46	6	71	0	1289	1288	0	1	0
MYOM1	8736	ucsc.edu	37	18	3126829	3126829	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	36	4	43	0	0	0	0	0	0
EPB41L3	23136	bcgsc.ca	37	18	5395093	5395093	+	Silent	SNP	C	C	A	rs144676596	alternate_allele	TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	150	9	153	1	3	3	0	0	0
MIB1	57534	broad.mit.edu;bcgsc.ca	37	18	19399507	19399507	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	218	13	152	0	20	20	0	0	0
LAMA3	3909	ucsc.edu	37	18	21353512	21353512	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	16	7	17	0	0	0	0	0	0
HRH4	59340	broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	22048831	22048831	+	Silent	SNP	C	C	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	105	12	66	0	0	0	0	0	0
TAF4B	6875	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	23866009	23866009	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	82	64	146	0	2	1	1	0	0
DSC2	1824	ucsc.edu	37	18	28651590	28651590	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	63	6	61	0	2	2	0	0	0
DTNA	1837	ucsc.edu	37	18	32455262	32455262	+	Silent	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	46	5	101	0	0	0	0	0	0
RPRD1A	55197	ucsc.edu	37	18	33606970	33606970	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	61	6	62	0	32	32	0	0	0
FHOD3	80206	ucsc.edu	37	18	34340687	34340687	+	Silent	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	41	4	73	1	8	8	0	0	0
SLC14A2	8170	ucsc.edu	37	18	43253769	43253769	+	Silent	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	41	4	95	0	0	0	0	0	0
CDH20	28316	ucsc.edu	37	18	59221607	59221607	+	Silent	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	41	5	102	0	0	0	0	0	0
PHLPP1	23239	bcgsc.ca	37	18	60563128	60563128	+	Silent	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	91	7	163	0	4	4	0	0	0
DOK6	220164	hgsc.bcm.edu;broad.mit.edu	37	18	67266711	67266711	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	25	3	41	0	0	0	0	0	0
RTTN	25914	ucsc.edu	37	18	67727139	67727139	+	Silent	SNP	G	G	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	39	4	42	0	1	1	0	0	0
ATP9B	374868	ucsc.edu	37	18	77067227	77067227	+	Missense_Mutation	SNP	C	C	A	rs140577801	alternate_allele	TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	51	5	112	0	0	0	0	0	0
POLRMT	5442	ucsc.edu	37	19	618520	618520	+	Silent	SNP	G	G	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	34	4	49	0	39	38	1	0	0
MED16	10025	hgsc.bcm.edu	37	19	879943	879943	+	Missense_Mutation	SNP	G	G	C	rs76403059		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	25	3	36	1	1	1	0	0	0
SBNO2	22904	ucsc.edu	37	19	1119572	1119572	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	14	4	34	0	69	69	0	0	0
ATP8B3	148229	ucsc.edu;bcgsc.ca	37	19	1811677	1811677	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	29	10	36	0	0	0	0	0	0
LMNB2	84823	ucsc.edu	37	19	2438283	2438283	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	44	4	87	0	0	0	0	0	0
NFIC	4782	ucsc.edu	37	19	3435161	3435161	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	29	4	40	0	42	42	0	0	0
UBXN6	80700	bcgsc.ca	37	19	4453969	4453969	+	Silent	SNP	G	G	T	rs200291730	alternate_allele	TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	187	9	214	0	106	106	0	0	0
SEMA6B	10501	ucsc.edu	37	19	4552610	4552610	+	Silent	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	39	5	60	0	14	14	0	0	0
LONP1	9361	ucsc.edu	37	19	5711980	5711980	+	Silent	SNP	G	G	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	36	5	45	0	75	75	0	0	0
TRIP10	9322	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	6743264	6743264	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	39	4	59	1	0	0	0	0	0
PNPLA6	10908	ucsc.edu	37	19	7625913	7625913	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	31	4	35	0	0	0	0	0	0
MAP2K7	5609	ucsc.edu	37	19	7975181	7975181	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	42	4	68	0	36	36	0	0	0
MUC16	94025	hgsc.bcm.edu;bcgsc.ca	37	19	9000512	9000512	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	111	7	136	1	1	1	0	0	0
MUC16	94025	bcgsc.ca	37	19	9074987	9074987	+	Silent	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	111	8	129	0	0	0	0	0	0
DOCK6	57572	ucsc.edu	37	19	11332854	11332854	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	24	4	35	0	45	45	0	0	0
NFIX	4784	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	13201202	13201202	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	102	41	134	0	0	0	0	0	0
TRMT1	55621	bcgsc.ca	37	19	13215880	13215880	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	101	6	176	2	7	7	0	0	0
TRMT1	55621	bcgsc.ca	37	19	13216374	13216374	+	Silent	SNP	G	G	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	138	8	185	2	21	21	0	0	0
CYP4F11	57834	bcgsc.ca	37	19	16033175	16033175	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	143	9	226	2	0	0	0	0	0
NR2F6	2063	broad.mit.edu	37	19	17355929	17355929	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	9	4	9	0	0	0	0	0	0
SLC5A5	6528	bcgsc.ca	37	19	17991758	17991758	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	95	8	95	0	0	0	0	0	0
PIK3R2	5296	ucsc.edu	37	19	18273078	18273078	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	33	4	52	0	62	62	0	0	0
NCAN	1463	bcgsc.ca	37	19	19345876	19345876	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	170	11	216	0	0	0	0	0	0
ZNF431	170959	ucsc.edu	37	19	21366428	21366428	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	53	5	70	1	4	4	0	0	0
ZNF536	9745	ucsc.edu	37	19	30934766	30934766	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	33	4	35	0	0	0	0	0	0
WDR88	126248	hgsc.bcm.edu	37	19	33635808	33635808	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	30	2	37	0	0	0	0	0	0
UPK1A-AS1	100862728	bcgsc.ca	37	19	36164105	36164105	+	RNA	SNP	G	G	C	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	67	29	120	1	0	0	0	0	0
MLL4	8085	ucsc.edu	37	19	36213324	36213324	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	24	4	31	0	45	45	0	0	0
TYROBP	7305	ucsc.edu	37	19	36395528	36395528	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	38	5	43	0	0	0	0	0	0
ZNF585B	92285	bcgsc.ca	37	19	37677613	37677613	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	298	13	300	1	7	7	0	0	0
CAPN12	147968	ucsc.edu	37	19	39229137	39229137	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	25	4	58	0	2	2	0	0	0
ECH1	1891	ucsc.edu	37	19	39322403	39322403	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	41	4	55	0	12	12	0	0	0
NCCRP1	342897	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	39691364	39691364	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	303	60	385	0	553	442	111	0	0
AKT2	208	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	40741033	40741033	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	82	38	108	1	154	71	83	0	0
C19orf47	126526	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	40832303	40832303	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	55	26	84	0	12	7	5	0	0
SPTBN4	57731	ucsc.edu	37	19	41081440	41081440	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	27	4	50	0	0	0	0	0	0
CYP2A13	1553	bcgsc.ca	37	19	41601671	41601671	+	Missense_Mutation	SNP	G	G	T	rs199942376	alternate_allele	TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	133	8	142	0	0	0	0	0	0
PSG10P	653492	ucsc.edu	37	19	43343495	43343495	+	RNA	SNP	G	G	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	34	6	55	0	0	0	0	0	0
LYPD3	27076	hgsc.bcm.edu	37	19	43967362	43967362	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	99	7	110	0	834	832	0	1	1
XRCC1	7515	ucsc.edu	37	19	44056372	44056372	+	Silent	SNP	C	C	A	rs201296138		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	33	4	38	0	47	47	0	0	0
ZNF225	7768	ucsc.edu	37	19	44622664	44622664	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	42	4	71	1	3	3	0	0	0
BBC3	27113	ucsc.edu	37	19	47725137	47725137	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	40	4	67	0	42	42	0	0	0
DHX34	9704	ucsc.edu	37	19	47885236	47885236	+	Splice_Site	SNP	G	G	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	35	4	50	0	3	3	0	0	0
LMTK3	114783	ucsc.edu	37	19	49001598	49001598	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	44	5	55	0	9	9	0	0	0
LMTK3	114783	ucsc.edu	37	19	49013397	49013397	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	39	4	48	0	0	0	0	0	0
ALDH16A1	126133	ucsc.edu	37	19	49969068	49969068	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	33	4	57	0	23	23	0	0	0
NAPSA	9476	ucsc.edu	37	19	50862764	50862764	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	37	4	71	0	1	1	0	0	0
POLD1	5424	ucsc.edu	37	19	50902150	50902150	+	Silent	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	32	4	27	0	8	8	0	0	0
KLK10	5655	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	51518766	51518766	+	Silent	SNP	G	G	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	385	66	468	0	0	0	0	0	0
ZNF160	90338	bcgsc.ca	37	19	53571518	53571518	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	128	9	138	1	14	14	0	0	0
ZNF347	84671	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	53643875	53643875	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	172	28	232	0	5	5	0	0	0
MYADM	91663	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	54377552	54377552	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	103	23	146	1	4	4	0	0	0
CACNG8	59283	ucsc.edu	37	19	54481483	54481483	+	Silent	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	33	4	53	1	0	0	0	0	0
LILRB1	10859	bcgsc.ca	37	19	55143538	55143538	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	138	10	207	1	2	2	0	0	0
NLRP7	199713	broad.mit.edu	37	19	55450843	55450843	+	Silent	SNP	G	G	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	46	6	93	0	2	2	0	0	0
TNNT1	7138	ucsc.edu	37	19	55648546	55648546	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	41	4	69	1	40	40	0	0	0
TMEM86B	255043	ucsc.edu	37	19	55739598	55739598	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	31	4	48	0	7	7	0	0	0
TMEM190	147744	ucsc.edu	37	19	55889358	55889358	+	Silent	SNP	G	G	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	39	4	58	0	0	0	0	0	0
GALP	85569	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	56694579	56694579	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	96	32	130	0	0	0	0	0	0
USP29	57663	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	57641187	57641187	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	106	42	102	0	0	0	0	0	0
ZNF552	79818	bcgsc.ca	37	19	58320135	58320135	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	203	12	223	1	18	18	0	0	0
MATN3	4148	ucsc.edu	37	2	20202990	20202990	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	49	6	81	0	2	2	0	0	0
IFT172	26160	ucsc.edu	37	2	27668231	27668231	+	Missense_Mutation	SNP	C	C	A	rs201017771	alternate_allele	TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	33	4	41	0	24	24	0	0	0
PLB1	151056	ucsc.edu	37	2	28772921	28772921	+	Silent	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	41	4	43	0	7	7	0	0	0
C2orf71	388939	bcgsc.ca	37	2	29295764	29295764	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	110	8	119	0	0	0	0	0	0
CAPN13	92291	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	30976059	30976059	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	102	32	106	2	0	0	0	0	0
CAPN13	92291	ucsc.edu	37	2	30985991	30985991	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	41	4	43	0	21	21	0	0	0
EHD3	30845	ucsc.edu	37	2	31489297	31489297	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	31	4	38	0	5	5	0	0	0
BIRC6	57448	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	32626579	32626579	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	106	38	111	0	7	6	1	0	0
BIRC6	57448	ucsc.edu	37	2	32730132	32730132	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	38	4	34	0	17	17	0	0	0
CEBPZ	10153	hgsc.bcm.edu;bcgsc.ca	37	2	37438989	37438989	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	22	9	43	0	1	1	0	0	0
SOS1	6654	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	39281894	39281894	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	166	68	213	0	8	5	3	0	0
SLC8A1	6546	ucsc.edu	37	2	40656723	40656723	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	59	6	68	0	0	0	0	0	0
MSH2	4436	ucsc.edu	37	2	47703548	47703548	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	62	6	67	0	11	11	0	0	0
KCNK12	56660	ucsc.edu	37	2	47748461	47748461	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	38	4	36	0	0	0	0	0	0
RPS27A	6233	ucsc.edu	37	2	55460003	55460003	+	Missense_Mutation	SNP	C	C	A	rs11557878		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	40	4	53	0	1	1	0	0	0
MDH1	4190	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	63826356	63826356	+	Nonsense_Mutation	SNP	C	C	G	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	93	11	85	1	172	170	2	0	0
ACTR2	10097	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	65492181	65492181	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	176	70	169	0	0	0	0	0	0
CLEC4F	165530	broad.mit.edu;bcgsc.ca	37	2	71043525	71043525	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	128	10	128	0	0	0	0	0	0
ZNF638	27332	bcgsc.ca	37	2	71597116	71597116	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	149	9	77	0	33	33	0	0	0
DYSF	8291	bcgsc.ca	37	2	71709078	71709078	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	96	7	92	1	4	4	0	0	0
REG1A	5967	ucsc.edu	37	2	79350317	79350317	+	Silent	SNP	C	C	A	rs201373323	alternate_allele	TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	64	6	44	0	0	0	0	0	0
ZAP70	7535	ucsc.edu	37	2	98349454	98349454	+	Silent	SNP	C	C	A	rs56340622	byfrequency;alternate_allele	TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	49	5	70	1	5	5	0	0	0
CNGA3	1261	bcgsc.ca	37	2	99006179	99006179	+	Missense_Mutation	SNP	C	C	A	rs200542032	alternate_allele	TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	123	7	137	0	0	0	0	0	0
TMEM182	130827	ucsc.edu	37	2	103431314	103431314	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	38	4	48	0	4	4	0	0	0
SULT1C2	6819	broad.mit.edu;ucsc.edu	37	2	108921890	108921890	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	50	5	60	0	0	0	0	0	0
ZC3H6	376940	ucsc.edu	37	2	113082227	113082227	+	Silent	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	19	4	30	0	0	0	0	0	0
STEAP3	55240	ucsc.edu	37	2	120003322	120003322	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	35	4	69	0	35	35	0	0	0
LOC401010	0	ucsc.edu	37	2	132201905	132201905	+	RNA	SNP	G	G	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	36	4	61	0	0	0	0	0	0
RAB3GAP1	22930	ucsc.edu;bcgsc.ca	37	2	135888257	135888257	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	82	8	67	0	21	21	0	0	0
EPC2	26122	ucsc.edu	37	2	149511604	149511604	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	26	4	22	0	17	17	0	0	0
NEB	4703	ucsc.edu	37	2	152388341	152388341	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	28	4	54	0	0	0	0	0	0
BAZ2B	29994	ucsc.edu	37	2	160229599	160229599	+	Silent	SNP	G	G	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	41	4	78	0	4	4	0	0	0
SLC4A10	57282	ucsc.edu	37	2	162813738	162813738	+	Silent	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	31	4	36	0	0	0	0	0	0
GAD1	2571	ucsc.edu	37	2	171716255	171716255	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	42	6	55	0	0	0	0	0	0
HOXD1	3231	ucsc.edu	37	2	177054181	177054181	+	Missense_Mutation	SNP	G	G	T	rs150112597	byfrequency;alternate_allele	TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	33	4	67	0	0	0	0	0	0
MTX2	10651	ucsc.edu	37	2	177194115	177194115	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	42	4	26	0	52	52	0	0	0
TTN	7273	ucsc.edu	37	2	179444098	179444098	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	42	4	74	0	1	1	0	0	0
FSIP2	401024	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	186678413	186678413	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	40	11	41	0	0	0	0	0	0
FAM171B	165215	ucsc.edu	37	2	187605159	187605159	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	49	5	49	0	1	1	0	0	0
FAM171B	165215	bcgsc.ca	37	2	187627072	187627072	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	104	8	129	0	0	0	0	0	0
COL5A2	1290	bcgsc.ca	37	2	189917486	189917486	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	97	7	71	0	0	0	0	0	0
MSTN	2660	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	190922196	190922196	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	69	34	60	0	0	0	0	0	0
HIBCH	26275	ucsc.edu;bcgsc.ca	37	2	191159287	191159287	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	72	7	73	0	38	38	0	0	0
ALS2CR12	130540	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	202172265	202172265	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	275	53	265	1	0	0	0	0	0
CDK15	65061	ucsc.edu	37	2	202671439	202671439	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	37	4	39	0	0	0	0	0	0
BMPR2	659	ucsc.edu	37	2	203407089	203407089	+	Silent	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	62	6	67	1	37	37	0	0	0
ALS2CR8	79800	ucsc.edu	37	2	203826110	203826110	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	40	4	50	0	2	2	0	0	0
PARD3B	117583	ucsc.edu	37	2	206265761	206265761	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	31	4	17	0	0	0	0	0	0
GPR1	2825	bcgsc.ca	37	2	207041783	207041783	+	Silent	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	299	12	335	0	2	2	0	0	0
FZD5	7855	ucsc.edu	37	2	208632222	208632222	+	Silent	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	41	4	55	0	23	23	0	0	0
SLC11A1	6556	ucsc.edu	37	2	219254716	219254716	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	42	4	75	0	2	2	0	0	0
STK36	27148	bcgsc.ca	37	2	219540759	219540759	+	Silent	SNP	C	C	A	rs200288195	alternate_allele	TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	166	9	239	0	0	0	0	0	0
PTPRN	5798	ucsc.edu	37	2	220154984	220154984	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	28	4	48	0	0	0	0	0	0
COL4A4	1286	ucsc.edu	37	2	227907883	227907883	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	39	4	69	0	0	0	0	0	0
COL4A4	1286	ucsc.edu	37	2	227919409	227919409	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	38	4	61	0	2	2	0	0	0
TRIP12	9320	ucsc.edu	37	2	230675857	230675857	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	35	4	66	0	0	0	0	0	0
SP110	3431	ucsc.edu	37	2	231035465	231035465	+	Missense_Mutation	SNP	C	C	A	rs200027337	alternate_allele	TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	33	4	53	0	1	1	0	0	0
SP100	6672	ucsc.edu	37	2	231325980	231325980	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	34	4	57	0	0	0	0	0	0
UGT1A9	54600	ucsc.edu	37	2	234580647	234580647	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	41	4	79	0	77	77	0	0	0
DNAJB3	414061	bcgsc.ca	37	2	234652392	234652392	+	Silent	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	192	10	373	0	0	0	0	0	0
KIF1A	547	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	241661280	241661280	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	11	8	32	0	2	0	2	0	0
FARP2	9855	ucsc.edu	37	2	242312596	242312596	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	39	4	98	0	7	7	0	0	0
FARP2	9855	ucsc.edu	37	2	242402826	242402826	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	36	4	82	1	6	6	0	0	0
ATG4B	23192	ucsc.edu	37	2	242607954	242607954	+	Splice_Site	SNP	G	G	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	11	4	29	0	0	0	0	0	0
TMEM74B	55321	broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	1161561	1161561	+	Silent	SNP	C	C	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	99	12	116	0	12	6	6	0	0
SLC4A11	83959	ucsc.edu	37	20	3211472	3211472	+	Silent	SNP	G	G	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	35	5	62	1	13	13	0	0	0
SNRPB2	6629	ucsc.edu;bcgsc.ca	37	20	16721613	16721613	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	86	9	60	0	74	74	0	0	0
OTOR	56914	bcgsc.ca	37	20	16729075	16729075	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	370	19	341	1	0	0	0	0	0
KIF3B	9371	ucsc.edu	37	20	30904662	30904662	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	42	5	65	0	23	23	0	0	0
BPIFB6	128859	bcgsc.ca	37	20	31625487	31625487	+	Silent	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	107	9	122	0	0	0	0	0	0
KIAA1755	85449	bcgsc.ca	37	20	36870194	36870194	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	160	10	161	0	0	0	0	0	0
CHD6	84181	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	40033767	40033767	+	Silent	SNP	G	G	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	156	23	170	0	19	19	0	0	0
CHD6	84181	broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	40050320	40050320	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	75	16	68	0	7	7	0	0	0
PTPRT	11122	bcgsc.ca	37	20	40714369	40714369	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	143	9	108	0	0	0	0	0	0
PTPN1	5770	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	49195155	49195155	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	56	18	77	0	0	0	0	0	0
PTPN1	5770	bcgsc.ca	37	20	49196390	49196390	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	135	9	126	0	36	36	0	0	0
GNAS	2778	ucsc.edu	37	20	57428568	57428568	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	36	4	41	0	0	0	0	0	0
GNAS	2778	ucsc.edu	37	20	57428789	57428789	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	43	4	39	0	0	0	0	0	0
HRH3	11255	broad.mit.edu	37	20	60791561	60791561	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	11	7	8	0	0	0	0	0	0
DIDO1	11083	ucsc.edu;bcgsc.ca	37	20	61523401	61523401	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	70	8	45	0	43	43	0	0	0
ARFGAP1	55738	ucsc.edu	37	20	61918925	61918925	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	43	5	52	0	1	1	0	0	0
HELZ2	85441	ucsc.edu	37	20	62203597	62203597	+	Missense_Mutation	SNP	T	T	G	rs200635909		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	18	3	21	3	18	16	2	0	0
ABHD16B	140701	ucsc.edu	37	20	62493676	62493676	+	Silent	SNP	G	G	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	38	4	40	0	10	10	0	0	0
RGS19	10287	ucsc.edu	37	20	62708230	62708230	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	28	5	21	0	11	11	0	0	0
DSCR6	53820	ucsc.edu	37	21	38385861	38385861	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	60	6	63	0	0	0	0	0	0
DYRK1A	1859	ucsc.edu	37	21	38868529	38868529	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	49	5	50	0	25	25	0	0	0
DIP2A	23181	broad.mit.edu;ucsc.edu;bcgsc.ca	37	21	47978259	47978259	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	24	7	21	0	12	8	4	0	0
GAB4	128954	bcgsc.ca	37	22	17450986	17450986	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	143	9	171	0	0	0	0	0	0
SERPIND1	3053	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	21140297	21140297	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	187	20	249	0	0	0	0	0	0
SERPIND1	3053	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	21140328	21140328	+	Silent	SNP	G	G	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	199	24	254	0	2	1	1	0	0
BCR	613	ucsc.edu	37	22	23524210	23524210	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	32	4	58	0	64	64	0	0	0
SGSM1	129049	ucsc.edu	37	22	25250988	25250988	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	39	4	35	0	3	3	0	0	0
SEZ6L	23544	broad.mit.edu	37	22	26702084	26702084	+	Silent	SNP	G	G	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	81	5	84	0	0	0	0	0	0
HPS4	89781	ucsc.edu	37	22	26875233	26875233	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	40	4	54	0	0	0	0	0	0
HSCB	150274	ucsc.edu	37	22	29138159	29138159	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	32	4	27	0	8	8	0	0	0
AP1B1	162	bcgsc.ca	37	22	29727447	29727447	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	221	12	296	2	0	0	0	0	0
NIPSNAP1	8508	bcgsc.ca	37	22	29957620	29957620	+	Silent	SNP	G	G	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	89	7	139	1	68	68	0	0	0
TBC1D10A	83874	bcgsc.ca	37	22	30690081	30690081	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	73	6	87	0	51	51	0	0	0
PLA2G3	50487	ucsc.edu	37	22	31534294	31534294	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	37	4	41	0	0	0	0	0	0
DEPDC5	9681	bcgsc.ca	37	22	32198757	32198757	+	Silent	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	134	8	122	1	10	10	0	0	0
MCM5	4174	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	35806777	35806777	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	176	54	209	0	50	24	26	0	0
MYH9	4627	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	36696256	36696256	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	113	50	131	0	445	253	192	0	0
TMPRSS6	164656	ucsc.edu	37	22	37470716	37470716	+	Nonsense_Mutation	SNP	C	C	A	rs148119956	alternate_allele	TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	40	4	47	0	0	0	0	0	0
TRIOBP	11078	bcgsc.ca	37	22	38168728	38168728	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	198	12	196	0	181	181	0	0	0
SLC25A17	10478	bcgsc.ca	37	22	41166970	41166970	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	304	12	295	0	14	14	0	0	0
CELSR1	9620	bcgsc.ca	37	22	46806300	46806300	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	132	8	142	0	0	0	0	0	0
CELSR1	9620	ucsc.edu	37	22	46931256	46931256	+	Silent	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	43	4	42	0	13	13	0	0	0
BRD1	23774	bcgsc.ca	37	22	50216605	50216605	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	110	7	141	0	0	0	0	0	0
HDAC10	83933	hgsc.bcm.edu;broad.mit.edu	37	22	50687534	50687534	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	19	9	19	1	2	1	1	0	0
CHKB-CPT1B	386593	bcgsc.ca	37	22	51018595	51018595	+	RNA	SNP	G	G	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	228	12	230	0	0	0	0	0	0
OGG1	4968	bcgsc.ca	37	3	9798759	9798759	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	179	8	218	1	2	2	0	0	0
ATP2B2	491	ucsc.edu	37	3	10426998	10426998	+	Silent	SNP	C	C	A	rs150252720	byfrequency;alternate_allele	TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	44	4	50	0	0	0	0	0	0
NUP210	23225	hgsc.bcm.edu;bcgsc.ca	37	3	13372031	13372031	+	Missense_Mutation	SNP	C	C	A	rs200296480	alternate_allele	TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	203	11	274	1	53	53	0	0	0
CCDC174	51244	ucsc.edu	37	3	14693349	14693349	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	38	4	60	0	8	8	0	0	0
CAPN7	23473	bcgsc.ca	37	3	15282100	15282100	+	Silent	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	86	7	83	0	21	21	0	0	0
OXSM	54995	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	25833175	25833175	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	178	86	176	0	0	0	0	0	0
FYCO1	79443	bcgsc.ca	37	3	46009616	46009616	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	327	18	434	3	22	22	0	0	0
SETD2	29072	bcgsc.ca	37	3	47162824	47162824	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	122	8	107	1	29	29	0	0	0
PTPN23	25930	ucsc.edu	37	3	47452780	47452780	+	Silent	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	42	4	43	0	11	11	0	0	0
CSPG5	10675	bcgsc.ca	37	3	47618582	47618582	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	68	6	67	0	0	0	0	0	0
PLXNB1	5364	ucsc.edu	37	3	48451480	48451480	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	46	5	60	0	2	2	0	0	0
PFKFB4	5210	ucsc.edu	37	3	48572990	48572990	+	Silent	SNP	C	C	A	rs201391687		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	39	4	43	0	21	21	0	0	0
SEMA3F	6405	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	50220896	50220896	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	71	7	85	0	180	157	23	0	0
SLC38A3	10991	ucsc.edu	37	3	50254718	50254718	+	Silent	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	24	4	35	0	0	0	0	0	0
NT5DC2	64943	bcgsc.ca	37	3	52562935	52562935	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	91	7	102	1	94	94	0	0	0
CACNA2D3	55799	bcgsc.ca	37	3	54930840	54930840	+	Silent	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	167	8	186	0	1	1	0	0	0
CADPS	8618	bcgsc.ca	37	3	62451042	62451042	+	Silent	SNP	G	G	T	rs62243467	byfrequency;alternate_allele	TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	244	11	146	0	0	0	0	0	0
SLC25A26	115286	ucsc.edu	37	3	66312497	66312497	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	26	4	12	0	20	20	0	0	0
PCNP	57092	bcgsc.ca	37	3	101311470	101311470	+	Splice_Site	SNP	G	G	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	101	9	112	0	0	0	0	0	0
CCDC80	151887	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	112324296	112324296	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	99	27	100	0	0	0	0	0	0
ILDR1	286676	ucsc.edu	37	3	121712218	121712218	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	43	5	37	0	9	9	0	0	0
ILDR1	286676	ucsc.edu	37	3	121712500	121712500	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	55	6	73	0	7	7	0	0	0
KALRN	8997	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	124103778	124103778	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	84	38	96	0	1	1	0	0	0
ZNF148	7707	ucsc.edu	37	3	125007058	125007058	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	37	4	37	0	0	0	0	0	0
MBD4	8930	bcgsc.ca	37	3	129156600	129156600	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	147	9	150	0	29	29	0	0	0
TRH	7200	ucsc.edu	37	3	129696053	129696053	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	35	4	39	0	0	0	0	0	0
NPHP3	27031	ucsc.edu	37	3	132402369	132402369	+	Splice_Site	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	62	6	50	0	1	1	0	0	0
KY	339855	ucsc.edu	37	3	134322978	134322978	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	13	4	18	0	0	0	0	0	0
MME	4311	hgsc.bcm.edu;bcgsc.ca	37	3	154860114	154860114	+	Missense_Mutation	SNP	C	C	A	rs201459271	alternate_allele	TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	102	9	76	0	0	0	0	0	0
TTC14	151613	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	180324303	180324303	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	214	119	111	0	11	6	5	0	0
CCDC39	339829	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	180337752	180337752	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	55	9	22	0	0	0	0	0	0
YEATS2	55689	bcgsc.ca	37	3	183454551	183454551	+	Silent	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	333	13	222	1	8	8	0	0	0
MB21D2	151963	broad.mit.edu	37	3	192516239	192516239	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	210	5	151	0	4	4	0	0	0
PAK2	5062	bcgsc.ca	37	3	196533524	196533524	+	Silent	SNP	C	C	A	rs73891516	byfrequency;alternate_allele	TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	105	7	110	0	146	145	1	0	0
ZNF721	170960	ucsc.edu	37	4	435553	435553	+	Silent	SNP	G	G	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	32	4	53	0	5	5	0	0	0
PDE6B	5158	broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	619524	619524	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	62	15	76	0	0	0	0	0	0
UVSSA	57654	ucsc.edu	37	4	1343462	1343462	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	42	4	76	0	6	6	0	0	0
FAM53A	152877	ucsc.edu	37	4	1643095	1643095	+	Silent	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	45	4	107	0	2	2	0	0	0
FGFR3	2261	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	1806099	1806099	+	Missense_Mutation	SNP	A	A	G	rs121913485	bycluster	TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	201	172	304	1	406	0	406	0	0
FGFR3	2261	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	1807891	1807891	+	Missense_Mutation	SNP	G	G	C	rs28928868		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	18	16	50	1	0	0	0	0	0
FGFR3	2261	broad.mit.edu;bcgsc.ca	37	4	1808562	1808562	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	13	10	22	0	1	0	1	0	0
GRK4	2868	bcgsc.ca	37	4	3021472	3021472	+	Silent	SNP	C	C	A	rs141637189	alternate_allele	TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	170	10	179	0	1	1	0	0	0
JAKMIP1	152789	broad.mit.edu;ucsc.edu	37	4	6052355	6052355	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	11	7	12	0	0	0	0	0	0
ACOX3	8310	ucsc.edu	37	4	8417695	8417695	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	49	5	78	0	27	27	0	0	0
CPEB2	132864	ucsc.edu	37	4	15018863	15018863	+	Missense_Mutation	SNP	C	C	A	rs144630360	byfrequency;alternate_allele	TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	57	6	49	0	8	8	0	0	0
PPARGC1A	10891	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	23830149	23830149	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	198	70	210	1	0	0	0	0	0
SEL1L3	23231	bcgsc.ca	37	4	25783942	25783942	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	169	9	195	2	3	3	0	0	0
LOC344967	0	ucsc.edu	37	4	40045301	40045301	+	RNA	SNP	G	G	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	37	4	50	0	2	2	0	0	0
CORIN	10699	bcgsc.ca	37	4	47645251	47645251	+	Silent	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	115	8	101	1	0	0	0	0	0
FRYL	285527	ucsc.edu	37	4	48525095	48525095	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	64	6	100	1	21	21	0	0	0
KIT	3815	ucsc.edu	37	4	55573425	55573425	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	41	4	30	0	1	1	0	0	0
HOPX	84525	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	4	57514941	57514941	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	145	61	172	0	321	178	143	0	0
FRAS1	80144	bcgsc.ca	37	4	79440559	79440559	+	Silent	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	157	9	287	1	0	0	0	0	0
NAA11	84779	ucsc.edu	37	4	80246384	80246384	+	Silent	SNP	G	G	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	31	4	32	0	0	0	0	0	0
WDFY3	23001	ucsc.edu	37	4	85656207	85656207	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	40	4	47	0	0	0	0	0	0
AP1AR	55435	ucsc.edu	37	4	113189318	113189318	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	29	4	33	0	14	14	0	0	0
NDST3	9348	ucsc.edu	37	4	119161756	119161756	+	Silent	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	54	5	65	1	0	0	0	0	0
PLK4	10733	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	128813651	128813651	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	53	7	94	0	4	2	2	0	0
LARP1B	55132	ucsc.edu;bcgsc.ca	37	4	129003391	129003391	+	Silent	SNP	C	C	A	rs144025629	alternate_allele	TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	70	7	83	0	13	13	0	0	0
PHF17	79960	ucsc.edu	37	4	129793225	129793225	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	23	4	39	0	1	1	0	0	0
PCDH10	57575	ucsc.edu	37	4	134072784	134072784	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	49	6	130	1	0	0	0	0	0
MGST2	4258	ucsc.edu	37	4	140624664	140624664	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	54	7	97	0	81	81	0	0	0
INPP4B	8821	ucsc.edu	37	4	143326361	143326361	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	54	6	56	0	0	0	0	0	0
TMEM184C	55751	ucsc.edu	37	4	148555490	148555490	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	62	6	107	0	12	12	0	0	0
CTSO	1519	ucsc.edu	37	4	156849516	156849516	+	Silent	SNP	G	G	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	34	4	45	0	6	6	0	0	0
FNIP2	57600	ucsc.edu	37	4	159789516	159789516	+	Silent	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	28	4	86	0	1	1	0	0	0
PALLD	23022	ucsc.edu	37	4	169837072	169837072	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	39	4	81	0	59	59	0	0	0
LRP2BP	55805	ucsc.edu	37	4	186296881	186296881	+	Splice_Site	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	43	4	74	0	0	0	0	0	0
FAM149A	25854	ucsc.edu	37	4	187073192	187073192	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	37	5	55	0	0	0	0	0	0
FAT1	2195	bcgsc.ca	37	4	187518087	187518087	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	121	8	177	0	136	136	0	0	0
FAT1	2195	ucsc.edu	37	4	187524811	187524811	+	Silent	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	41	4	56	0	74	74	0	0	0
SDHA	6389	bcgsc.ca	37	5	223624	223624	+	Silent	SNP	C	C	A	rs142441643	byfrequency;alternate_allele	TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	266	12	182	2	58	58	0	0	0
SLC6A19	340024	bcgsc.ca	37	5	1216926	1216926	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	236	10	195	0	0	0	0	0	0
ADCY2	108	bcgsc.ca	37	5	7695917	7695917	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	95	8	50	0	0	0	0	0	0
FASTKD3	79072	bcgsc.ca	37	5	7867968	7867968	+	Missense_Mutation	SNP	C	C	A	rs139472729	alternate_allele	TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	182	11	106	0	7	7	0	0	0
SEMA5A	9037	bcgsc.ca	37	5	9044667	9044667	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	143	10	89	0	62	62	0	0	0
FST	10468	ucsc.edu	37	5	52779414	52779414	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	53	5	68	0	5	5	0	0	0
MAP3K1	4214	ucsc.edu	37	5	56155606	56155606	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	35	4	37	0	10	10	0	0	0
NLN	57486	bcgsc.ca	37	5	65118660	65118660	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	118	9	147	0	5	5	0	0	0
MAST4	375449	ucsc.edu	37	5	66445362	66445362	+	Silent	SNP	G	G	T	rs188285175	by1000genomes;alternate_allele	TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	34	4	27	0	0	0	0	0	0
MAP1B	4131	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	71495628	71495628	+	Nonsense_Mutation	SNP	C	C	G	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	73	8	141	1	3	3	0	0	0
ZNF366	167465	bcgsc.ca	37	5	71743073	71743073	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	67	7	91	0	0	0	0	0	0
FCHO2	115548	ucsc.edu	37	5	72370589	72370589	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	33	4	29	0	17	17	0	0	0
CMYA5	202333	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	79027353	79027353	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	94	51	114	0	15	4	11	0	0
CMYA5	202333	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	79030983	79030983	+	Missense_Mutation	SNP	G	G	C	rs79193094	alternate_allele	TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	84	38	122	1	24	9	15	0	0
CMYA5	202333	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	79031337	79031337	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	140	75	176	0	24	11	13	0	0
CMYA5	202333	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	79031882	79031882	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	58	24	66	0	9	3	6	0	0
CMYA5	202333	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	79032579	79032579	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	50	25	68	0	35	19	16	0	0
MTX3	345778	hgsc.bcm.edu	37	5	79284404	79284404	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	18	2	26	0	3	3	0	0	0
SERINC5	256987	bcgsc.ca	37	5	79473137	79473137	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	76	7	86	0	0	0	0	0	0
VCAN	1462	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	82786054	82786054	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	99	23	126	1	8	8	0	0	0
VCAN	1462	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	82817031	82817031	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	105	9	116	0	0	0	0	0	0
PHAX	51808	ucsc.edu;bcgsc.ca	37	5	125939612	125939612	+	Silent	SNP	C	C	A	rs112951341	alternate_allele	TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	38	5	54	1	14	14	0	0	0
PRRC1	133619	ucsc.edu;bcgsc.ca	37	5	126862325	126862325	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	66	7	69	0	23	23	0	0	0
IRF1	3659	ucsc.edu	37	5	131819667	131819667	+	Silent	SNP	G	G	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	43	4	75	1	50	50	0	0	0
VDAC1	7416	bcgsc.ca	37	5	133316555	133316555	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	125	9	174	0	379	379	0	0	0
KDM3B	51780	bcgsc.ca	37	5	137727601	137727601	+	Silent	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	290	14	442	2	35	35	0	0	0
ANKHD1	54882	ucsc.edu;bcgsc.ca	37	5	139908297	139908297	+	Silent	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	77	7	130	0	65	64	0	0	1
APBB3	10307	hgsc.bcm.edu	37	5	139940335	139940335	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	25	2	71	0	0	0	0	0	0
PCDHA4	56144	bcgsc.ca	37	5	140187161	140187161	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	112	9	175	0	0	0	0	0	0
PCDHB16	57717	ucsc.edu	37	5	140562428	140562428	+	Silent	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	41	4	65	0	2	2	0	0	0
PCDHB12	56124	bcgsc.ca	37	5	140588872	140588872	+	Silent	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	139	8	158	0	2	2	0	0	0
PCDHGC3	5098	broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	140856910	140856910	+	Silent	SNP	G	G	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	59	14	97	0	6	3	3	0	0
DPYSL3	1809	bcgsc.ca	37	5	146798139	146798139	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	201	10	258	0	6	6	0	0	0
SPINK5	11005	bcgsc.ca	37	5	147486619	147486619	+	Missense_Mutation	SNP	G	G	T	rs201428589	alternate_allele	TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	71	7	116	0	0	0	0	0	0
ABLIM3	22885	ucsc.edu	37	5	148586615	148586615	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	33	4	65	0	25	25	0	0	0
NDST1	3340	ucsc.edu;bcgsc.ca	37	5	149927825	149927825	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	48	7	83	1	17	17	0	0	0
NDST1	3340	ucsc.edu	37	5	149929349	149929349	+	Missense_Mutation	SNP	C	C	A	rs201660056	alternate_allele	TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	38	4	44	0	0	0	0	0	0
ZNF300P1	134466	bcgsc.ca	37	5	150322072	150322072	+	RNA	SNP	G	G	C	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	27	7	37	0	0	0	0	0	0
GRIA1	2890	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	153078520	153078520	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	82	19	135	0	0	0	0	0	0
SGCD	6444	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	156186311	156186311	+	Silent	SNP	C	C	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	131	44	171	1	0	0	0	0	0
UBLCP1	134510	ucsc.edu	37	5	158696077	158696077	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	52	6	76	1	0	0	0	0	0
TENM2	57451	bcgsc.ca	37	5	167674930	167674930	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	106	7	174	0	0	0	0	0	0
SH3PXD2B	285590	bcgsc.ca	37	5	171766567	171766567	+	Silent	SNP	G	G	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	85	6	113	0	13	13	0	0	0
SH3PXD2B	285590	ucsc.edu	37	5	171766760	171766760	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	31	4	67	0	16	16	0	0	0
CDYL	9425	ucsc.edu	37	6	4892435	4892435	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	39	4	69	1	29	29	0	0	0
RREB1	6239	ucsc.edu	37	6	7229309	7229309	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	33	4	65	0	5	5	0	0	0
RREB1	6239	ucsc.edu	37	6	7231014	7231014	+	Silent	SNP	G	G	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	40	5	120	0	18	18	0	0	0
HIST1H2BD	3017	bcgsc.ca	37	6	26158476	26158476	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	127	8	222	0	33	33	0	0	0
ZNF311	282890	ucsc.edu	37	6	28963225	28963225	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	41	5	104	2	0	0	0	0	0
OR11A1	26531	ucsc.edu	37	6	29394924	29394924	+	Silent	SNP	G	G	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	34	4	68	0	0	0	0	0	0
GABBR1	2550	ucsc.edu	37	6	29577062	29577062	+	Silent	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	37	4	54	0	1	1	0	0	0
PPP1R10	5514	ucsc.edu	37	6	30573935	30573935	+	Silent	SNP	G	G	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	58	6	108	0	41	41	0	0	0
MRPS18B	28973	bcgsc.ca	37	6	30585700	30585700	+	Silent	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	78	6	112	0	16	16	0	0	0
CCHCR1	54535	ucsc.edu	37	6	31112752	31112752	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	43	5	150	1	6	6	0	0	0
HLA-B	3106	broad.mit.edu	37	6	31324628	31324628	+	Silent	SNP	G	G	A	rs151341114	alternate_allele	TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	12	7	21	0	871	164	705	1	0
PRRC2A	7916	ucsc.edu	37	6	31599470	31599470	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	17	4	42	0	40	40	0	0	0
GPANK1	7918	ucsc.edu	37	6	31630360	31630360	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	42	4	92	1	19	19	0	0	0
ABHD16A	7920	ucsc.edu	37	6	31657449	31657449	+	Silent	SNP	G	G	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	27	4	42	0	26	26	0	0	0
RGL2	5863	ucsc.edu	37	6	33261284	33261284	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	33	4	95	0	58	58	0	0	0
DAXX	1616	ucsc.edu	37	6	33289049	33289049	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	53	5	106	0	25	25	0	0	0
SCUBE3	222663	ucsc.edu	37	6	35210518	35210518	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	48	5	149	0	0	0	0	0	0
SRPK1	6732	ucsc.edu	37	6	35810321	35810321	+	Silent	SNP	G	G	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	29	4	60	0	0	0	0	0	0
CDKN1A	1026	ucsc.edu	37	6	36652279	36652279	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	37	4	69	0	72	72	0	0	0
MDGA1	266727	bcgsc.ca	37	6	37622577	37622577	+	Silent	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	198	10	293	0	0	0	0	0	0
DAAM2	23500	ucsc.edu	37	6	39866677	39866677	+	Silent	SNP	G	G	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	15	4	29	0	2	2	0	0	0
OARD1	221443	ucsc.edu	37	6	41035121	41035121	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	50	5	62	0	8	8	0	0	0
TREM1	54210	ucsc.edu	37	6	41243934	41243934	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	40	4	59	0	2	2	0	0	0
FOXP4	116113	bcgsc.ca	37	6	41533574	41533574	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	81	18	170	16	6	6	0	0	0
MED20	9477	ucsc.edu	37	6	41874930	41874930	+	Silent	SNP	G	G	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	38	4	56	0	10	10	0	0	0
CUL7	9820	broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	43008726	43008726	+	Silent	SNP	G	G	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	12	4	30	0	7	4	3	0	0
KLC4	89953	ucsc.edu	37	6	43034770	43034770	+	Silent	SNP	G	G	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	42	4	107	0	11	11	0	0	0
CUL9	23113	hgsc.bcm.edu	37	6	43181268	43181268	+	Silent	SNP	T	T	C	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	43	3	111	0	4	4	0	0	0
ABCC10	89845	ucsc.edu	37	6	43400842	43400842	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	50	6	118	0	10	10	0	0	0
TJAP1	93643	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	43468508	43468508	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	82	59	170	2	1	0	1	0	0
TJAP1	93643	ucsc.edu	37	6	43472982	43472982	+	Missense_Mutation	SNP	C	C	A	rs200438172	alternate_allele	TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	41	4	121	0	6	6	0	0	0
LRRC73	221424	ucsc.edu	37	6	43476117	43476117	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	41	4	71	0	0	0	0	0	0
XPO5	57510	ucsc.edu	37	6	43493613	43493613	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	38	4	81	0	27	26	0	1	0
GTPBP2	54676	ucsc.edu	37	6	43589884	43589884	+	Silent	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	29	4	64	0	27	27	0	0	0
RSPH9	221421	ucsc.edu	37	6	43612953	43612953	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	49	5	112	0	0	0	0	0	0
NFKBIE	4794	ucsc.edu	37	6	44227840	44227840	+	Silent	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	33	4	67	0	6	6	0	0	0
GPR116	221395	ucsc.edu	37	6	46826506	46826506	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	31	4	79	0	0	0	0	0	0
GPR116	221395	ucsc.edu	37	6	46830808	46830808	+	Silent	SNP	G	G	T	rs139946395	alternate_allele	TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	40	4	101	0	12	12	0	0	0
PKHD1	5314	ucsc.edu	37	6	51914990	51914990	+	Silent	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	40	4	81	0	0	0	0	0	0
GSTA5	221357	ucsc.edu;bcgsc.ca	37	6	52699061	52699061	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	62	7	141	1	0	0	0	0	0
GSTA5	221357	bcgsc.ca	37	6	52701122	52701122	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	85	7	152	0	0	0	0	0	0
FAM83B	222584	ucsc.edu	37	6	54805492	54805492	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	45	5	47	0	19	19	0	0	0
COL21A1	81578	ucsc.edu	37	6	55925755	55925755	+	Silent	SNP	G	G	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	32	4	60	0	0	0	0	0	0
DST	667	ucsc.edu	37	6	56335918	56335918	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	24	4	29	0	0	0	0	0	0
RNU6-71	100873774	bcgsc.ca	37	6	56496624	56496624	+	RNA	SNP	G	G	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	20	15	38	0	0	0	0	0	0
COL19A1	1310	ucsc.edu	37	6	70871843	70871843	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	50	5	74	0	0	0	0	0	0
COL9A1	1297	ucsc.edu	37	6	70964180	70964180	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	36	4	52	0	0	0	0	0	0
COL12A1	1303	ucsc.edu	37	6	75798866	75798866	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	36	5	57	0	2	2	0	0	0
COL12A1	1303	ucsc.edu	37	6	75855928	75855928	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	31	4	49	0	2	2	0	0	0
MYO6	4646	ucsc.edu	37	6	76551058	76551058	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	33	4	41	0	12	12	0	0	0
DOPEY1	23033	ucsc.edu	37	6	83847161	83847161	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	25	4	45	0	9	9	0	0	0
RARS2	57038	ucsc.edu	37	6	88251703	88251703	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	45	5	52	0	0	0	0	0	0
MDN1	23195	ucsc.edu	37	6	90499594	90499594	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	39	4	86	0	1	1	0	0	0
GTF3C6	112495	ucsc.edu	37	6	111288989	111288989	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	41	4	91	0	22	22	0	0	0
GSTM2P1	442245	ucsc.edu	37	6	111368617	111368617	+	RNA	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	36	4	111	0	0	0	0	0	0
TPI1P3	728402	ucsc.edu	37	6	116360430	116360430	+	RNA	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	44	4	76	0	0	0	0	0	0
COL10A1	1300	ucsc.edu	37	6	116442516	116442516	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	34	5	94	0	0	0	0	0	0
KIAA0408	9729	bcgsc.ca	37	6	127775124	127775124	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	129	8	158	1	0	0	0	0	0
MAP7	9053	ucsc.edu	37	6	136682309	136682309	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	41	4	84	0	0	0	0	0	0
GPR126	57211	ucsc.edu	37	6	142737200	142737200	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	36	4	53	0	0	0	0	0	0
HIVEP2	3097	ucsc.edu	37	6	143074822	143074822	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	44	4	79	0	18	18	0	0	0
UTRN	7402	ucsc.edu	37	6	144613022	144613022	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	26	4	43	0	2	2	0	0	0
UST	10090	ucsc.edu;bcgsc.ca	37	6	149285591	149285591	+	Silent	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	41	6	76	0	0	0	0	0	0
SYNE1	23345	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	152557320	152557320	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	81	58	159	0	2	2	0	0	0
SYNE1	23345	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	152560730	152560730	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	61	47	101	0	1	0	1	0	0
SYNE1	23345	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	152730280	152730280	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	55	45	99	0	1	0	1	0	0
IGF2R	3482	ucsc.edu	37	6	160525775	160525775	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	42	4	99	0	67	67	0	0	0
SLC22A3	6581	bcgsc.ca	37	6	160828156	160828156	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	120	9	196	1	0	0	0	0	0
MLLT4	4301	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	168347543	168347543	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	77	60	160	0	18	0	18	0	0
FRMD1	79981	hgsc.bcm.edu;broad.mit.edu	37	6	168457843	168457843	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	10	8	10	0	0	0	0	0	0
INTS1	26173	ucsc.edu	37	7	1518041	1518041	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	33	4	59	0	61	61	0	0	0
GNA12	2768	ucsc.edu	37	7	2773115	2773115	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	25	4	37	0	33	33	0	0	0
TNRC18	84629	ucsc.edu	37	7	5348895	5348895	+	Silent	SNP	G	G	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	41	4	53	0	76	76	0	0	0
DAGLB	221955	ucsc.edu	37	7	6456386	6456386	+	Splice_Site	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	52	5	75	0	1	1	0	0	0
THSD7A	221981	ucsc.edu	37	7	11447009	11447009	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	42	4	40	0	3	3	0	0	0
CHN2	1124	ucsc.edu	37	7	29440349	29440349	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	48	5	55	0	15	15	0	0	0
GHRHR	2692	bcgsc.ca	37	7	31009494	31009494	+	Missense_Mutation	SNP	G	G	T	rs200848306	alternate_allele	TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	164	9	177	1	0	0	0	0	0
HECW1	23072	ucsc.edu	37	7	43484555	43484555	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	28	4	47	0	0	0	0	0	0
AEBP1	165	ucsc.edu	37	7	44151910	44151910	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	40	4	74	0	0	0	0	0	0
ZMIZ2	83637	bcgsc.ca	37	7	44807168	44807168	+	Silent	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	100	7	103	0	66	66	0	0	0
ZNF713	349075	ucsc.edu	37	7	56006985	56006985	+	Silent	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	73	7	66	0	1	1	0	0	0
SUMF2	25870	bcgsc.ca	37	7	56145862	56145862	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	92	8	108	0	199	199	0	0	0
SBDS	51119	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	66456129	66456129	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	84	33	65	0	0	0	0	0	0
PMS2P4	5382	bcgsc.ca	37	7	66751399	66751399	+	RNA	SNP	G	G	T	rs190106838		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	176	10	189	1	1	1	0	0	0
CLIP2	7461	ucsc.edu	37	7	73790326	73790326	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	21	4	32	0	15	15	0	0	0
PHTF2	57157	hgsc.bcm.edu;broad.mit.edu	37	7	77539715	77539715	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	51	7	47	0	0	0	0	0	0
MAGI2	9863	hgsc.bcm.edu;broad.mit.edu	37	7	77885410	77885410	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	41	6	34	0	0	0	0	0	0
GRM3	2913	bcgsc.ca	37	7	86468832	86468832	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	188	8	180	2	0	0	0	0	0
PEX1	5189	bcgsc.ca	37	7	92148335	92148335	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	183	10	109	1	14	14	0	0	0
COL1A2	1278	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	94035021	94035021	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	264	56	204	0	50	50	0	0	0
TECPR1	25851	ucsc.edu	37	7	97846741	97846741	+	Silent	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	44	4	36	0	19	19	0	0	0
TECPR1	25851	ucsc.edu	37	7	97846753	97846753	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	44	5	38	0	12	12	0	0	0
TFR2	7036	broad.mit.edu	37	7	100239125	100239125	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	40	5	47	0	0	0	0	0	0
SLC12A9	56996	bcgsc.ca	37	7	100457628	100457628	+	Missense_Mutation	SNP	C	C	A	rs143596115	alternate_allele	TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	196	11	213	0	84	84	0	0	0
COL26A1	136227	ucsc.edu	37	7	101188706	101188706	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	32	4	35	0	1	1	0	0	0
LRWD1	222229	ucsc.edu	37	7	102107925	102107925	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	42	4	33	0	0	0	0	0	0
LAMB4	22798	ucsc.edu	37	7	107718723	107718723	+	Silent	SNP	G	G	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	29	5	27	0	0	0	0	0	0
CTTNBP2	83992	bcgsc.ca	37	7	117432365	117432365	+	Silent	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	218	11	217	1	0	0	0	0	0
CALU	813	bcgsc.ca	37	7	128399054	128399054	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	389	16	292	1	139	139	0	0	0
TNPO3	23534	bcgsc.ca	37	7	128610347	128610347	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	294	11	253	0	46	46	0	0	0
EPHB6	2051	ucsc.edu	37	7	142561027	142561027	+	Silent	SNP	G	G	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	49	5	74	0	106	106	0	0	0
ZYX	7791	bcgsc.ca	37	7	143079916	143079916	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	137	9	140	1	553	549	2	0	2
TAS2R41	259287	broad.mit.edu;bcgsc.ca	37	7	143175820	143175820	+	Silent	SNP	C	C	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	85	14	95	0	0	0	0	0	0
ATG9B	285973	broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	150720230	150720230	+	Silent	SNP	G	G	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	349	66	369	0	5	5	0	0	0
FASTK	10922	ucsc.edu	37	7	150776850	150776850	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	20	4	29	0	56	56	0	0	0
AGAP3	116988	ucsc.edu	37	7	150817097	150817097	+	Silent	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	35	4	50	0	163	162	0	0	1
RHEB	6009	bcgsc.ca	37	7	151181828	151181828	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	117	7	69	0	0	0	0	0	0
NCAPG2	54892	bcgsc.ca	37	7	158443585	158443585	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	153	9	127	0	7	7	0	0	0
RP1L1	94137	hgsc.bcm.edu;broad.mit.edu	37	8	10468873	10468873	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	17	5	36	0	0	0	0	0	0
PCM1	5108	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	17885162	17885162	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	62	10	63	0	22	15	7	0	0
SLC25A37	51312	ucsc.edu	37	8	23429212	23429212	+	Silent	SNP	G	G	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	41	4	59	0	19	19	0	0	0
EBF2	64641	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	25890622	25890622	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	155	20	144	0	0	0	0	0	0
PNMA2	10687	ucsc.edu	37	8	26365435	26365435	+	Silent	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	48	5	80	1	0	0	0	0	0
DUSP4	1846	ucsc.edu	37	8	29195960	29195960	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	36	4	48	0	89	89	0	0	0
ANK1	286	ucsc.edu	37	8	41583331	41583331	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	30	4	33	0	0	0	0	0	0
CHRNB3	1142	bcgsc.ca	37	8	42587045	42587045	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	118	7	134	0	0	0	0	0	0
SGK3	23678	ucsc.edu	37	8	67763106	67763106	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	38	4	35	0	6	6	0	0	0
ZFHX4	79776	ucsc.edu	37	8	77763549	77763549	+	Silent	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	24	4	41	0	0	0	0	0	0
MATN2	4147	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	99019720	99019720	+	Silent	SNP	C	C	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	72	30	85	0	0	0	0	0	0
DEPTOR	64798	bcgsc.ca	37	8	121061842	121061842	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	173	10	173	0	33	33	0	0	0
KCNQ3	3786	ucsc.edu	37	8	133141623	133141623	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	47	6	65	0	2	2	0	0	0
TG	7038	bcgsc.ca	37	8	133883671	133883671	+	Missense_Mutation	SNP	C	C	A	rs114322847	byfrequency;alternate_allele	TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	128	10	157	1	0	0	0	0	0
TG	7038	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	133945814	133945814	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	113	12	138	0	0	0	0	0	0
WISP1	8840	ucsc.edu	37	8	134203390	134203390	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	32	4	22	0	0	0	0	0	0
WISP1	8840	ucsc.edu	37	8	134225230	134225230	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	39	4	85	0	3	3	0	0	0
BAI1	575	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	143603450	143603450	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	78	30	54	0	0	0	0	0	0
JRK	8629	ucsc.edu	37	8	143740339	143740339	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	39	4	27	0	2	2	0	0	0
SCRIB	23513	ucsc.edu	37	8	144876110	144876110	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	39	4	57	0	62	62	0	0	0
PLEC	5339	ucsc.edu	37	8	144991895	144991895	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	38	4	60	1	135	135	0	0	0
OPLAH	26873	ucsc.edu	37	8	145107921	145107921	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	17	4	22	0	38	38	0	0	0
RPL8	6132	bcgsc.ca	37	8	146017219	146017219	+	Silent	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	222	12	236	1	3085	3080	3	1	1
SMARCA2	6595	ucsc.edu	37	9	2070443	2070443	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	27	5	57	0	42	42	0	0	0
KIAA1432	57589	ucsc.edu	37	9	5774116	5774116	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	38	4	91	0	3	3	0	0	0
TTC39B	158219	ucsc.edu	37	9	15172108	15172108	+	Splice_Site	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	35	4	36	0	0	0	0	0	0
BNC2	54796	bcgsc.ca	37	9	16436375	16436375	+	Missense_Mutation	SNP	G	G	T	rs116528562	byfrequency;alternate_allele	TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	64	6	131	0	0	0	0	0	0
FAM154A	158297	ucsc.edu	37	9	18929037	18929037	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	43	4	73	0	0	0	0	0	0
AQP7	364	bcgsc.ca	37	9	33386995	33386995	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	140	9	218	1	0	0	0	0	0
PTENP1	11191	ucsc.edu	37	9	33675806	33675806	+	RNA	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	42	4	99	0	37	37	0	0	0
IL11RA	3590	ucsc.edu	37	9	34659809	34659809	+	Silent	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	44	4	93	1	2	2	0	0	0
RUSC2	9853	ucsc.edu	37	9	35555518	35555518	+	Silent	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	40	4	105	0	6	6	0	0	0
CA9	768	ucsc.edu	37	9	35675534	35675534	+	Splice_Site	SNP	G	G	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	42	4	105	0	0	0	0	0	0
FRMPD1	22844	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	37729833	37729833	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	44	34	102	2	0	0	0	0	0
TRPM3	80036	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	73151243	73151243	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	91	65	189	2	0	0	0	0	0
TMEM2	23670	ucsc.edu	37	9	74340619	74340619	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	36	4	65	0	0	0	0	0	0
RMI1	80010	ucsc.edu	37	9	86616271	86616271	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	29	4	57	0	7	7	0	0	0
S1PR3	1903	ucsc.edu	37	9	91616940	91616940	+	Silent	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	32	4	58	0	7	7	0	0	0
SEMA4D	10507	ucsc.edu	37	9	91978749	91978749	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	37	4	71	0	16	16	0	0	0
SYK	6850	bcgsc.ca	37	9	93629462	93629462	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	81	7	167	1	12	12	0	0	0
ZNF782	158431	bcgsc.ca	37	9	99580716	99580716	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	179	11	245	0	0	0	0	0	0
TBC1D2	55357	ucsc.edu;bcgsc.ca	37	9	100971074	100971074	+	Silent	SNP	G	G	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	43	6	74	0	21	21	0	0	0
OR13C3	138803	ucsc.edu	37	9	107298944	107298944	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	37	4	51	0	0	0	0	0	0
ZNF462	58499	ucsc.edu	37	9	109687050	109687050	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	35	4	74	1	1	1	0	0	0
TMEM245	23731	ucsc.edu	37	9	111853368	111853368	+	Silent	SNP	G	G	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	43	5	103	0	47	47	0	0	0
DNAJC25	548645	ucsc.edu	37	9	114411961	114411961	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	27	4	38	0	3	3	0	0	0
SUSD1	64420	ucsc.edu	37	9	114814679	114814679	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	36	4	55	0	1	1	0	0	0
HSDL2	84263	ucsc.edu	37	9	115232774	115232774	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	42	4	55	0	26	26	0	0	0
AKNA	80709	ucsc.edu	37	9	117108981	117108981	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	33	4	88	0	6	6	0	0	0
C5	727	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	9	123783919	123783919	+	Silent	SNP	C	C	G	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	61	6	141	0	0	0	0	0	0
GSN	2934	ucsc.edu	37	9	124080760	124080760	+	Silent	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	62	6	93	0	0	0	0	0	0
OR1B1	347169	ucsc.edu	37	9	125391688	125391688	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	41	5	76	1	0	0	0	0	0
DOLK	22845	ucsc.edu	37	9	131708395	131708395	+	Silent	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	40	4	108	0	24	24	0	0	0
SH3GLB2	56904	ucsc.edu	37	9	131772449	131772449	+	Silent	SNP	G	G	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	40	4	84	0	147	147	0	0	0
CRAT	1384	bcgsc.ca	37	9	131864709	131864709	+	Silent	SNP	G	G	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	127	10	309	0	43	43	0	0	0
C9orf50	375759	ucsc.edu	37	9	132374714	132374714	+	Missense_Mutation	SNP	C	C	A	rs146484870	byfrequency;alternate_allele	TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	24	4	34	0	0	0	0	0	0
ASS1	445	bcgsc.ca	37	9	133346240	133346240	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	124	8	297	1	103	103	0	0	0
DDX31	64794	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	135545615	135545615	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	24	17	47	1	1	1	0	0	0
AK8	158067	ucsc.edu	37	9	135739071	135739071	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	29	4	71	0	0	0	0	0	0
WDR5	11091	ucsc.edu	37	9	137023042	137023042	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	42	5	83	0	40	40	0	0	0
KCNT1	57582	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	9	138594186	138594186	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	19	9	61	0	0	0	0	0	0
GPSM1	26086	ucsc.edu	37	9	139251000	139251000	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	32	4	38	0	0	0	0	0	0
SEC16A	9919	ucsc.edu	37	9	139371222	139371222	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	36	4	62	0	33	33	0	0	0
CLIC3	9022	broad.mit.edu;bcgsc.ca	37	9	139890192	139890192	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	7	4	17	0	91	66	25	0	0
ABCA2	20	ucsc.edu;bcgsc.ca	37	9	139902387	139902387	+	Silent	SNP	G	G	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	19	6	37	0	40	21	19	0	0
ENTPD8	377841	ucsc.edu	37	9	140331054	140331054	+	Silent	SNP	G	G	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	32	4	27	0	1	1	0	0	0
AKAP17A	8227	bcgsc.ca	37	X	1712465	1712465	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	298	15	254	2	21	21	0	0	0
AKAP17A	8227	bcgsc.ca	37	X	1712725	1712725	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	405	14	399	1	17	16	0	0	1
DHRSX	207063	bcgsc.ca	37	X	2343308	2343308	+	Silent	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	286	11	166	1	11	11	0	0	0
SCML2	10389	bcgsc.ca	37	X	18259490	18259490	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	277	12	165	1	1	1	0	0	0
PCYT1B	9468	ucsc.edu	37	X	24580501	24580501	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	43	4	27	0	0	0	0	0	0
MAGEB6	158809	bcgsc.ca	37	X	26213115	26213115	+	Silent	SNP	C	C	A	rs143709838	alternate_allele	TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	295	12	196	1	0	0	0	0	0
RPGR	6103	ucsc.edu	37	X	38178082	38178082	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	43	5	36	0	0	0	0	0	0
MAOB	4129	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	43655117	43655117	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	125	46	138	0	4	0	4	0	0
KDM6A	7403	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	44870205	44870205	+	Splice_Site	SNP	G	G	C	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	67	30	60	0	0	0	0	0	0
KDM6A	7403	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	X	44969446	44969447	+	Frame_Shift_Del	DEL	AC	AC	-	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	AC	AC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	106	36	79	0	0	0	0	0	0
UXT	8409	ucsc.edu	37	X	47516973	47516973	+	Silent	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	25	4	30	0	0	0	0	0	0
CXXC1P1	392459	bcgsc.ca	37	X	47578275	47578275	+	RNA	SNP	A	A	C	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	37	4	37	0	0	0	0	0	0
HUWE1	10075	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	53641559	53641559	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	337	116	251	1	41	4	37	0	0
ACRC	93953	ucsc.edu	37	X	70832292	70832292	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	43	4	26	0	0	0	0	0	0
ERCC6L	54821	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	X	71426809	71426809	+	Nonsense_Mutation	SNP	G	G	C	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	175	12	122	0	3	2	1	0	0
PHKA1	5255	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	71886083	71886083	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	92	48	60	0	3	3	0	0	0
BRWD3	254065	bcgsc.ca	37	X	79973153	79973153	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	266	11	159	0	5	5	0	0	0
TMEM35	59353	bcgsc.ca	37	X	100334002	100334002	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	117	9	129	0	0	0	0	0	0
NXF4	55999	ucsc.edu	37	X	101823461	101823461	+	RNA	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	32	4	43	0	0	0	0	0	0
GPRASP2	114928	broad.mit.edu;bcgsc.ca	37	X	101971025	101971025	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	176	7	143	0	4	4	0	0	0
TCEAL5	340543	ucsc.edu	37	X	102529411	102529411	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	41	4	57	0	0	0	0	0	0
CLDN2	9075	bcgsc.ca	37	X	106172020	106172020	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	281	12	278	0	1	1	0	0	0
COL4A6	1288	bcgsc.ca	37	X	107415728	107415728	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	345	13	270	0	20	20	0	0	0
AMMECR1	9949	bcgsc.ca	37	X	109445694	109445694	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	115	7	40	1	28	28	0	0	0
PGRMC1	10857	broad.mit.edu;bcgsc.ca	37	X	118370497	118370497	+	Silent	SNP	C	C	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	52	9	40	0	50	50	0	0	0
ATP1B4	23439	bcgsc.ca	37	X	119505019	119505019	+	Silent	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	208	10	152	0	0	0	0	0	0
STAG2	10735	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	123202456	123202456	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	183	57	122	0	4	1	3	0	0
TENM1	10178	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	123680889	123680889	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	201	112	132	0	0	0	0	0	0
SAGE1	55511	bcgsc.ca	37	X	134991805	134991805	+	Silent	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	139	8	96	0	0	0	0	0	0
ATP2B3	492	bcgsc.ca	37	X	152827614	152827614	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	436	15	354	1	0	0	0	0	0
PLXNA3	55558	bcgsc.ca	37	X	153693838	153693838	+	Silent	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	113	9	102	1	49	49	0	0	0
HSPA8	3312	bcgsc.ca	37	11	122929378	122929379	+	In_Frame_Ins	INS	-	-	TACTCT	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	88	6	121	0	0	0	0	0	0
CNGA3	1261	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	99012521	99012522	+	Frame_Shift_Ins	INS	-	-	GT	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	92	20	99	0	0	0	0	0	0
BRD8	10902	hgsc.bcm.edu;bcgsc.ca	37	5	137505020	137505021	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	113	27	159	0	0	0	0	0	0
PCDH20	64881	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	61986466	61986467	+	Missense_Mutation	DNP	CC	CC	TT	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	CC	CC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	121	25	128	0	0	0	0	0	0
