Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	NormalRefReads_WU	NormalVarReads_WU	NormalVAF_WU	TumorRefReads_WU	TumorVarReads_WU	TumorVAF_WU	RNARefReads_WU	RNAVarReads_WU	RNAVAF_WU
SMC1A	0	genome.wustl.edu	36	X	53452803	53452803	+	Missense_Mutation	SNP	G	G	C			TCGA-AB-2822-03D-01W-0755-09	TCGA-AB-2822-11D-01W-0755-09	G	G	G	C	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	68b67026-2f30-4839-8579-7a07341b8976	55451b4d-c9af-477d-acdd-d6749bf27f2f	X	53452803	53452803	G	C	SNP	SMC1A	NM_006306.2	human	genbank	54_36p	-1	reviewed	missense	c.1460	p.A487G	1.000	HMMPfam_SMC_N,superfamily_SMC_hinge,superfamily_SSF52540	HMMPfam_SMC_N,HMMPfam_SMC_hinge,superfamily_SMC_hinge,superfamily_SSF52540	-	no_errors	61	1	1.61	22	68	75.56	4	31	88.57
MED12	0	genome.wustl.edu	36	X	70272893	70272893	+	Nonsense_Mutation	SNP	G	G	A			TCGA-AB-2822-03D-01W-0755-09	TCGA-AB-2822-11D-01W-0755-09	G	G	G	A	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	68b67026-2f30-4839-8579-7a07341b8976	55451b4d-c9af-477d-acdd-d6749bf27f2f	X	70272893	70272893	G	A	SNP	MED12	NM_005120.2	human	genbank	54_36p	+1	validated	nonsense	c.5063	p.W1688*	1.000	NULL	HMMPfam_Med12	-	no_errors	295	0	0.00	40	95	69.34	2	38	95.00
UTS2	0	genome.wustl.edu	36	1	7836067	7836067	+	Silent	SNP	G	G	A			TCGA-AB-2822-03D-01W-0755-09	TCGA-AB-2822-11D-01W-0755-09	G	G	G	A	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	68b67026-2f30-4839-8579-7a07341b8976	55451b4d-c9af-477d-acdd-d6749bf27f2f	1	7836067	7836067	G	A	SNP	UTS2	NM_021995.3	human	genbank	54_36p	-1	reviewed	silent	c.12	p.N4	0.000	NULL	HMMPfam_Urotensin_II,PatternScan_UROTENSIN_II	-	no_errors	162	0	0.00	130	80	38.10	NA	NA	NA
DNMT3A	0	genome.wustl.edu	36	2	25320712	25320712	+	Splice_Site	SNP	C	C	T			TCGA-AB-2822-03D-01W-0755-09	TCGA-AB-2822-11D-01W-0755-09	C	C	C	T	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	68b67026-2f30-4839-8579-7a07341b8976	55451b4d-c9af-477d-acdd-d6749bf27f2f	2	25320712	25320712	C	T	SNP	DNMT3A	NM_022552.3	human	genbank	54_36p	-1	reviewed	splice_site	c.1668-1	e14-1	1.000	-	-	-	no_errors	12	0	0.00	10	17	62.96	7	14	66.67
R3HDM1	0	genome.wustl.edu	36	2	136125804	136125804	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2822-03D-01W-0755-09	TCGA-AB-2822-11D-01W-0755-09	G	G	G	A	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	68b67026-2f30-4839-8579-7a07341b8976	55451b4d-c9af-477d-acdd-d6749bf27f2f	2	136125804	136125804	G	A	SNP	R3HDM1	NM_015361.2	human	genbank	54_36p	+1	provisional	missense	c.1655	p.S552N	1.000	NULL	HMMPfam_R3H,HMMSmart_SM00393,superfamily_R3H domain	-	no_errors	147	1	0.68	145	79	34.96	15	23	60.53
IDH1	0	genome.wustl.edu	36	2	208821358	208821358	+	Missense_Mutation	SNP	G	G	A	rs121913499		TCGA-AB-2822-03D-01W-0755-09	TCGA-AB-2822-11D-01W-0755-09	G	G	G	A	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	68b67026-2f30-4839-8579-7a07341b8976	55451b4d-c9af-477d-acdd-d6749bf27f2f	2	208821358	208821358	G	A	SNP	IDH1	NM_005896.2	human	genbank	54_36p	-1	reviewed	missense	c.394	p.R132C	1.000	HMMPfam_Iso_dh,superfamily_Isocitrate/Isopropylmalate dehydrogenase-like	HMMPfam_Iso_dh,PatternScan_IDH_IMDH,superfamily_Isocitrate/Isopropylmalate dehydrogenase-like	-	no_errors	46	0	0.00	84	53	38.41	31	39	54.93
NCAPG	0	genome.wustl.edu	36	4	17426051	17426051	+	Silent	SNP	C	C	T			TCGA-AB-2822-03D-01W-0755-09	TCGA-AB-2822-11D-01W-0755-09	C	C	C	T	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	68b67026-2f30-4839-8579-7a07341b8976	55451b4d-c9af-477d-acdd-d6749bf27f2f	4	17426051	17426051	C	T	SNP	NCAPG	NM_022346.3	human	genbank	54_36p	+1	validated	silent	c.747	p.L249	0.982	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	66	0	0.00	93	44	31.65	2	3	60.00
AGXT2	0	genome.wustl.edu	36	5	35072874	35072874	+	Missense_Mutation	SNP	G	G	T			TCGA-AB-2822-03D-01W-0755-09	TCGA-AB-2822-11D-01W-0755-09	G	G	G	T	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	68b67026-2f30-4839-8579-7a07341b8976	55451b4d-c9af-477d-acdd-d6749bf27f2f	5	35072874	35072874	G	T	SNP	AGXT2	NM_031900.2	human	genbank	54_36p	-1	reviewed	missense	c.416	p.T139N	0.001	HMMPfam_Aminotran_3,superfamily_PyrdxlP-dep_Trfase_major	HMMPfam_Aminotran_3,PatternScan_AA_TRANSFER_CLASS_3,superfamily_PyrdxlP-dep_Trfase_major	-	no_errors	102	0	0.00	186	101	34.95	NA	NA	NA
EDIL3	0	genome.wustl.edu	36	5	83438262	83438262	+	Silent	SNP	C	C	T			TCGA-AB-2822-03D-01W-0755-09	TCGA-AB-2822-11D-01W-0755-09	C	C	C	T	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	68b67026-2f30-4839-8579-7a07341b8976	55451b4d-c9af-477d-acdd-d6749bf27f2f	5	83438262	83438262	C	T	SNP	EDIL3	NM_005711.3	human	genbank	54_36p	-1	reviewed	silent	c.612	p.A204	1.000	HMMPfam_F5_F8_type_C,HMMSmart_SM00231,PatternScan_FA58C_1,superfamily_Galactose-binding domain-like	PatternScan_ASX_HYDROXYL,HMMPfam_F5_F8_type_C,HMMSmart_SM00231,PatternScan_FA58C_1,PatternScan_FA58C_2,HMMSmart_SM00179,HMMPfam_EGF,HMMSmart_SM00181,superfamily_Galactose-binding domain-like,PatternScan_EGF_1,PatternScan_EGF_2,PatternScan_EGF_CA,superfamily_EGF/Laminin	-	no_errors	64	0	0.00	193	39	16.74	NA	NA	NA
PCDHB6	0	genome.wustl.edu	36	5	140510496	140510496	+	Missense_Mutation	SNP	T	T	A			TCGA-AB-2822-03D-01W-0755-09	TCGA-AB-2822-11D-01W-0755-09	T	T	T	A	T	T	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	68b67026-2f30-4839-8579-7a07341b8976	55451b4d-c9af-477d-acdd-d6749bf27f2f	5	140510496	140510496	T	A	SNP	PCDHB6	NM_018939.2	human	genbank	54_36p	+1	reviewed	missense	c.474	p.D158E	0.982	HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin	HMMPfam_Cadherin,HMMSmart_CA,PatternScan_CADHERIN_1,HMMPfam_Cadherin_2,superfamily_Cadherin	-	no_errors	51	0	0.00	82	64	43.54	NA	NA	NA
GCM2	0	genome.wustl.edu	36	6	10985374	10985374	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2822-03D-01W-0755-09	TCGA-AB-2822-11D-01W-0755-09	G	G	G	A	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	68b67026-2f30-4839-8579-7a07341b8976	55451b4d-c9af-477d-acdd-d6749bf27f2f	6	10985374	10985374	G	A	SNP	GCM2	NM_004752.3	human	genbank	54_36p	-1	reviewed	missense	c.328	p.R110W	0.850	HMMPfam_GCM,superfamily_GCM_motif	HMMPfam_GCM,superfamily_GCM_motif	-	no_errors	83	0	0.00	88	61	40.67	NA	NA	NA
ITPR3	0	genome.wustl.edu	36	6	33765099	33765099	+	Silent	SNP	G	G	A			TCGA-AB-2822-03D-01W-0755-09	TCGA-AB-2822-11D-01W-0755-09	G	G	G	A	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	68b67026-2f30-4839-8579-7a07341b8976	55451b4d-c9af-477d-acdd-d6749bf27f2f	6	33765099	33765099	G	A	SNP	ITPR3	NM_002224.2	human	genbank	54_36p	+1	validated	silent	c.6801	p.A2267	0.185	NULL	HMMPfam_RYDR_ITPR,HMMPfam_MIR,superfamily_MIR,HMMPfam_Ion_trans,HMMPfam_RIH_assoc,HMMPfam_Ins145_P3_rec,HMMSmart_MIR,superfamily_SSF100909	-	no_errors	110	0	0.00	75	42	35.90	4	3	42.86
TMEM200A	0	genome.wustl.edu	36	6	130803775	130803775	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2822-03D-01W-0755-09	TCGA-AB-2822-11D-01W-0755-09	C	C	C	T	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	68b67026-2f30-4839-8579-7a07341b8976	55451b4d-c9af-477d-acdd-d6749bf27f2f	6	130803775	130803775	C	T	SNP	TMEM200A	NM_052913.2	human	genbank	54_36p	+1	provisional	missense	c.515	p.T172M	0.961	NULL	HMMPfam_DUF2371	-	no_errors	126	0	0.00	363	75	17.05	1	0	0.00
WRN	0	genome.wustl.edu	36	8	31124475	31124475	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2822-03D-01W-0755-09	TCGA-AB-2822-11D-01W-0755-09	G	G	G	A	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	68b67026-2f30-4839-8579-7a07341b8976	55451b4d-c9af-477d-acdd-d6749bf27f2f	8	31124475	31124475	G	A	SNP	WRN	NM_000553.4	human	genbank	54_36p	+1	reviewed	missense	c.3513	p.M1171I	0.995	HMMPfam_HRDC,HMMSmart_SM00341	HMMPfam_Helicase_C,HMMSmart_SM00490,HMMPfam_HRDC,HMMSmart_SM00341,HMMPfam_3_5_exonuc,HMMSmart_SM00474,HMMPfam_DEAD,superfamily_Ribonuclease H-like,HMMSmart_SM00487,HMMPfam_RQC,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors	47	0	0.00	294	119	28.61	45	28	38.36
GRID1	0	genome.wustl.edu	36	10	87369739	87369739	+	Missense_Mutation	SNP	T	T	A			TCGA-AB-2822-03D-01W-0755-09	TCGA-AB-2822-11D-01W-0755-09	T	T	T	A	T	T	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	68b67026-2f30-4839-8579-7a07341b8976	55451b4d-c9af-477d-acdd-d6749bf27f2f	10	87369739	87369739	T	A	SNP	GRID1	NM_017551.2	human	genbank	54_36p	-1	reviewed	missense	c.2225	p.D742V	1.000	HMMPfam_Lig_chan,HMMSmart_SM00079,superfamily_Periplasmic binding protein-like II	HMMPfam_Lig_chan,HMMSmart_SM00079,HMMPfam_ANF_receptor,PatternScan_ALDEHYDE_DEHYDR_GLU,HMMPfam_Lig_chan-Glu_bd,superfamily_Periplasmic binding protein-like I,superfamily_Periplasmic binding protein-like II	-	no_errors	98	0	0.00	98	58	37.18	2	0	0.00
LRRC43	0	genome.wustl.edu	36	12	121243474	121243474	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2822-03D-01W-0755-09	TCGA-AB-2822-11D-01W-0755-09	G	G	G	A	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	68b67026-2f30-4839-8579-7a07341b8976	55451b4d-c9af-477d-acdd-d6749bf27f2f	12	121243474	121243474	G	A	SNP	LRRC43	NM_001098519.1	human	genbank	54_36p	+1	validated	missense	c.1319	p.R440H	0.000	NULL	superfamily_Outer arm dynein light chain 1	-	no_errors	129	1	0.77	42	24	36.36	NA	NA	NA
LEO1	0	genome.wustl.edu	36	15	50017675	50017675	+	Missense_Mutation	SNP	G	G	C			TCGA-AB-2822-03D-01W-0755-09	TCGA-AB-2822-11D-01W-0755-09	G	G	G	C	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	68b67026-2f30-4839-8579-7a07341b8976	55451b4d-c9af-477d-acdd-d6749bf27f2f	15	50017675	50017675	G	C	SNP	LEO1	NM_138792.2	human	genbank	54_36p	-1	provisional	missense	c.1971	p.I657M	1.000	NULL	HMMPfam_Leo1	-	no_errors	337	2	0.59	160	105	39.62	24	20	45.45
SYT17	0	genome.wustl.edu	36	16	19143586	19143586	+	Missense_Mutation	SNP	G	G	C			TCGA-AB-2822-03D-01W-0755-09	TCGA-AB-2822-11D-01W-0755-09	G	G	G	C	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	68b67026-2f30-4839-8579-7a07341b8976	55451b4d-c9af-477d-acdd-d6749bf27f2f	16	19143586	19143586	G	C	SNP	SYT17	NM_016524.2	human	genbank	54_36p	+1	validated	missense	c.1153	p.D385H	0.989	HMMPfam_C2,HMMSmart_C2,superfamily_C2_CaLB	HMMPfam_C2,HMMSmart_C2,superfamily_C2_CaLB	-	no_errors	363	0	0.00	291	159	35.25	NA	NA	NA
FLJ22167	0	genome.wustl.edu	36	16	74134048	74134048	+	Missense_Mutation	SNP	T	T	C			TCGA-AB-2822-03D-01W-0755-09	TCGA-AB-2822-11D-01W-0755-09	T	T	T	C	T	T	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	68b67026-2f30-4839-8579-7a07341b8976	55451b4d-c9af-477d-acdd-d6749bf27f2f	16	74134048	74134048	T	C	SNP	FLJ22167	NM_001077416.1	human	genbank	54_36p	-1	validated	missense	c.704	p.Y235C	0.061	HMMPfam_NAcGluc_Transf	HMMPfam_NAcGluc_Transf	-	no_errors	127	0	0.00	51	29	35.80	2	2	50.00
WSCD1	0	genome.wustl.edu	36	17	5964535	5964535	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2822-03D-01W-0755-09	TCGA-AB-2822-11D-01W-0755-09	G	G	G	A	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	68b67026-2f30-4839-8579-7a07341b8976	55451b4d-c9af-477d-acdd-d6749bf27f2f	17	5964535	5964535	G	A	SNP	WSCD1	NM_015253.1	human	genbank	54_36p	+1	validated	missense	c.1558	p.V520M	1.000	superfamily_SSF52540	HMMPfam_WSC,HMMSmart_WSC,superfamily_SSF52540	-	no_errors	36	0	0.00	87	15	14.71	NA	NA	NA
MYH4	0	genome.wustl.edu	36	17	10301589	10301589	+	Silent	SNP	G	G	A			TCGA-AB-2822-03D-01W-0755-09	TCGA-AB-2822-11D-01W-0755-09	G	G	G	A	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	68b67026-2f30-4839-8579-7a07341b8976	55451b4d-c9af-477d-acdd-d6749bf27f2f	17	10301589	10301589	G	A	SNP	MYH4	NM_017533.2	human	genbank	54_36p	-1	validated	silent	c.1770	p.D590	1.000	HMMPfam_Myosin_head,HMMSmart_MYSc,superfamily_SSF52540	HMMSmart_IQ,HMMPfam_Myosin_head,HMMSmart_MYSc,HMMPfam_Myosin_tail_1,HMMPfam_Myosin_N,superfamily_SSF52540	-	no_errors	58	0	0.00	91	49	34.75	NA	NA	NA
uc010dwx.1	0	genome.wustl.edu	36	19	10019021	10019021	+	Silent	SNP	C	C	T			TCGA-AB-2822-03D-01W-0755-09	TCGA-AB-2822-11D-01W-0755-09	C	C	C	T	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	68b67026-2f30-4839-8579-7a07341b8976	55451b4d-c9af-477d-acdd-d6749bf27f2f	19	10019021	10019021	C	T	SNP	uc010dwx.1	ENST00000333905	human	ensembl	54_36p	+1	known	silent	c.184	p.L62	0.997	HMMPfam_A2M	HMMPfam_A2M,superfamily_Terpenoid cyclases/Protein prenyltransferases,HMMPfam_A2M_comp	-	no_errors	414	0	0.00	152	75	33.04	NA	NA	NA
LOC728748	0	genome.wustl.edu	36	X	73535890	73535891	+	RNA	INS	-	-	CTTGAAGAACTGTC			TCGA-AB-2822-03D-01W-0755-09	TCGA-AB-2822-11D-01W-0755-09	-	-	-	CTTGAAGAACTGTC	-	-	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	68b67026-2f30-4839-8579-7a07341b8976	55451b4d-c9af-477d-acdd-d6749bf27f2f	X	73535890	73535891	-	CTTGAAGAACTGTC	INS	LOC728748	XR_037583.1	human	genbank	54_36p	-1	model	rna	NULL	NULL	1.000:0.993	-	-	-	pseudogene	NA	NA	NA	NA	NA	NA	NA	NA	NA
TET2	0	genome.wustl.edu	36	4	106375492	106375492	+	Frame_Shift_Del	DEL	C	C	-			TCGA-AB-2822-03D-01W-0755-09	TCGA-AB-2822-11D-01W-0755-09	C	C	C	-	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	68b67026-2f30-4839-8579-7a07341b8976	55451b4d-c9af-477d-acdd-d6749bf27f2f	4	106375492	106375492	C	-	DEL	TET2	NM_017628.1	human	genbank	54_36p	+1	validated	frame_shift_del	c.944	p.Q317fs	0.998	NULL	NULL	-	no_errors	191	3	1.55	240	140	36.46	28	13	30.95
