Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	dataset	type	classification	start	end	gene	chr	ref_allele	tum_allele1	tum_allele2	context
MACF1	23499	broad.mit.edu	36	1	39672880	39672880	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-61-2092-01	TCGA-61-2092-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	39672880	39672880	MACF1	1	G	G	C	33
ADAR	103	broad.mit.edu	36	1	152829018	152829018	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-61-2092-01	TCGA-61-2092-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	152829018	152829018	ADAR	1	G	G	A	36
OR5P2	120065	broad.mit.edu	36	11	7774747	7774747	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-61-2092-01	TCGA-61-2092-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	7774747	7774747	OR5P2	11	C	C	T	31
DYRK2	8445	broad.mit.edu	36	12	66337947	66337947	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-61-2092-01	TCGA-61-2092-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	66337947	66337947	DYRK2	12	G	G	A	37
RASAL1	8437	broad.mit.edu	36	12	112053104	112053104	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-61-2092-01	TCGA-61-2092-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	112053104	112053104	RASAL1	12	G	G	A	35
PXN	5829	broad.mit.edu	36	12	119137799	119137799	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-61-2092-01	TCGA-61-2092-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	119137799	119137799	PXN	12	C	C	T	23
DYNC1H1	1778	broad.mit.edu	36	14	101515924	101515924	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-61-2092-01	TCGA-61-2092-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	101515924	101515924	DYNC1H1	14	A	A	G	4
TRPM1	4308	broad.mit.edu	36	15	29105687	29105687	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-61-2092-01	TCGA-61-2092-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	29105687	29105687	TRPM1	15	C	C	T	24
GDE1	51573	broad.mit.edu	36	16	19440544	19440544	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-61-2092-01	TCGA-61-2092-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	19440544	19440544	GDE1	16	G	G	C	34
TP53	7157	broad.mit.edu	36	17	7518951	7518951	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-61-2092-01	TCGA-61-2092-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	7518951	7518951	TP53	17	T	T	A	58
MIF4GD	57409	broad.mit.edu	36	17	70775508	70775508	+	Nonsense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-61-2092-01	TCGA-61-2092-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Nonsense_Mutation	SNP	70775508	70775508	MIF4GD	17	G	G	A	47
ZFP161	7541	broad.mit.edu	36	18	5281171	5281171	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-61-2092-01	TCGA-61-2092-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	5281171	5281171	ZFP161	18	G	G	A	43
ANKRD29	147463	broad.mit.edu	36	18	19483072	19483072	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-61-2092-01	TCGA-61-2092-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	19483072	19483072	ANKRD29	18	G	G	A	42
MOCOS	55034	broad.mit.edu	36	18	32037134	32037134	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-61-2092-01	TCGA-61-2092-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	32037134	32037134	MOCOS	18	C	C	T	22
ZNF441	126068	broad.mit.edu	36	19	11753139	11753139	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-61-2092-01	TCGA-61-2092-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	11753139	11753139	ZNF441	19	T	T	C	51
ZNF30	90075	broad.mit.edu	36	19	40127079	40127079	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-61-2092-01	TCGA-61-2092-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	40127079	40127079	ZNF30	19	G	G	A	45
EGLN2	112398	broad.mit.edu	36	19	46004333	46004333	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-61-2092-01	TCGA-61-2092-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	46004333	46004333	EGLN2	19	G	G	A	39
GLTSCR2	29997	broad.mit.edu	36	19	52940675	52940675	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-61-2092-01	TCGA-61-2092-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	52940675	52940675	GLTSCR2	19	G	G	C	34
LILRB5	10990	broad.mit.edu	36	19	59448664	59448664	+	Splice_Site_SNP	SNP	T	T	C	novel	Unknown	TCGA-61-2092-01	TCGA-61-2092-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Splice_Site_SNP	SNP	59448664	59448664	LILRB5	19	T	T	C	56
DLEC1	9940	broad.mit.edu	36	3	38114099	38114099	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-61-2092-01	TCGA-61-2092-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	38114099	38114099	DLEC1	3	G	G	A	38
MST1R	4486	broad.mit.edu	36	3	49914844	49914844	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-61-2092-01	TCGA-61-2092-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	49914844	49914844	MST1R	3	G	G	T	41
PI4K2B	55300	broad.mit.edu	36	4	24867331	24867331	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-61-2092-01	TCGA-61-2092-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	24867331	24867331	PI4K2B	4	G	G	A	36
PCDHB16	57717	broad.mit.edu	36	5	140542463	140542463	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-61-2092-01	TCGA-61-2092-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	140542463	140542463	PCDHB16	5	G	G	C	35
PCDHGA11	56105	broad.mit.edu	36	5	140781782	140781782	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-61-2092-01	TCGA-61-2092-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	140781782	140781782	PCDHGA11	5	G	G	A	39
EBF1	1879	broad.mit.edu	36	5	158456626	158456626	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-61-2092-01	TCGA-61-2092-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	158456626	158456626	EBF1	5	G	G	A	40
MUT	4594	broad.mit.edu	36	6	49535127	49535127	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-61-2092-01	TCGA-61-2092-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	49535127	49535127	MUT	6	A	A	G	15
GPNMB	10457	broad.mit.edu	36	7	23263167	23263167	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-61-2092-01	TCGA-61-2092-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	23263167	23263167	GPNMB	7	G	G	A	39
PCLO	27445	broad.mit.edu	36	7	82419794	82419794	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-61-2092-01	TCGA-61-2092-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	82419794	82419794	PCLO	7	G	G	A	46
ZSCAN21	7589	broad.mit.edu	36	7	99492938	99492938	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-61-2092-01	TCGA-61-2092-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	99492938	99492938	ZSCAN21	7	C	C	T	27
CRB2	286204	broad.mit.edu	36	9	125172861	125172861	+	Nonsense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-61-2092-01	TCGA-61-2092-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Nonsense_Mutation	SNP	125172861	125172861	CRB2	9	C	C	T	21
RPGR	6103	broad.mit.edu	36	X	38067608	38067608	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-61-2092-01	TCGA-61-2092-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	38067608	38067608	RPGR	23	C	C	A	25
CXCR3	2833	broad.mit.edu	36	X	70753547	70753547	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-61-2092-01	TCGA-61-2092-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	70753547	70753547	CXCR3	23	C	C	T	27
RHOXF1	158800	broad.mit.edu	36	X	119133481	119133481	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-61-2092-01	TCGA-61-2092-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	119133481	119133481	RHOXF1	23	C	C	T	27
MAGEA11	4110	broad.mit.edu	36	X	148576946	148576946	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-61-2092-01	TCGA-61-2092-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	148576946	148576946	MAGEA11	23	C	C	A	29
