Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	dataset	type	classification	start	end	gene	chr	ref_allele	tum_allele1	tum_allele2	context
DMRT2	10655	genome.wustl.edu	36	9	1046470	1046470	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-1509-01	TCGA-13-1509-10	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	1046470	1046470	DMRT2	9	C	C	G	18
CACNA1C	775	genome.wustl.edu	36	12	2659073	2659073	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-1509-01	TCGA-13-1509-10	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	2659073	2659073	CACNA1C	12	C	C	A	26
CNTN4	152330	genome.wustl.edu	36	3	3005054	3005054	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1509-01	TCGA-13-1509-10	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	3005054	3005054	CNTN4	3	C	C	T	24
OR51A4	401666	genome.wustl.edu	36	11	4924365	4924365	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1509-01	TCGA-13-1509-10	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	4924365	4924365	OR51A4	11	C	C	T	17
CUBN	8029	genome.wustl.edu	36	10	17125901	17125901	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-1509-01	TCGA-13-1509-10	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	17125901	17125901	CUBN	10	T	T	A	55
IFNB1	3456	genome.wustl.edu	36	9	21067536	21067536	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-1509-01	TCGA-13-1509-10	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	21067536	21067536	IFNB1	9	A	A	T	8
CMAS	55907	genome.wustl.edu	36	12	22105655	22105655	+	Splice_Site_SNP	SNP	T	T	G	novel	Unknown	TCGA-13-1509-01	TCGA-13-1509-10	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Splice_Site_SNP	SNP	22105655	22105655	CMAS	12	T	T	G	57
ARHGAP21	57584	genome.wustl.edu	36	10	24926891	24926891	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-1509-01	TCGA-13-1509-10	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	24926891	24926891	ARHGAP21	10	G	G	C	48
GPR158	57512	genome.wustl.edu	36	10	25927612	25927612	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-13-1509-01	TCGA-13-1509-10	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Silent	SNP	25927612	25927612	GPR158	10	T	T	C	58
AZI2	64343	genome.wustl.edu	36	3	28355111	28355111	+	Splice_Site_SNP	SNP	C	C	G	novel	Unknown	TCGA-13-1509-01	TCGA-13-1509-10	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Splice_Site_SNP	SNP	28355111	28355111	AZI2	3	C	C	G	28
SPEF2	79925	genome.wustl.edu	36	5	35809758	35809758	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1509-01	TCGA-13-1509-10	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	35809758	35809758	SPEF2	5	C	C	T	29
SRPK1	6732	genome.wustl.edu	36	6	35945246	35945246	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1509-01	TCGA-13-1509-10	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	35945246	35945246	SRPK1	6	C	C	T	30
SLC26A8	116369	genome.wustl.edu	36	6	36019678	36019678	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1509-01	TCGA-13-1509-10	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	36019678	36019678	SLC26A8	6	C	C	T	22
ZFAND3	60685	genome.wustl.edu	36	6	38192432	38192432	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-13-1509-01	TCGA-13-1509-10	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Silent	SNP	38192432	38192432	ZFAND3	6	G	G	T	44
SLC4A1	6521	genome.wustl.edu	36	17	39690943	39690944	+	Missense	DNP	CC	CC	AG	novel	Unknown	TCGA-13-1509-01	TCGA-13-1509-10	CC	CC	CC	AG	CC	CC	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense	DNP	39690943	39690944	SLC4A1	17	CC	CC	AG	26
ADAM2	2515	genome.wustl.edu	36	8	39721571	39721571	+	Splice_Site_SNP	SNP	T	T	A	novel	Unknown	TCGA-13-1509-01	TCGA-13-1509-10	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	WashU	Splice_Site_SNP	SNP	39721571	39721571	ADAM2	8	T	T	A	55
NPHS1	4868	genome.wustl.edu	36	19	41026974	41026974	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1509-01	TCGA-13-1509-10	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	41026974	41026974	NPHS1	19	G	G	A	39
UBR2	23304	genome.wustl.edu	36	6	42681509	42681509	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-13-1509-01	TCGA-13-1509-10	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	WashU	Silent	SNP	42681509	42681509	UBR2	6	T	T	C	54
B2M	567	genome.wustl.edu	36	15	42791037	42791037	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-1509-01	TCGA-13-1509-10	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	42791037	42791037	B2M	15	A	A	G	12
SLC28A2	9153	genome.wustl.edu	36	15	43347163	43347163	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1509-01	TCGA-13-1509-10	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	43347163	43347163	SLC28A2	15	C	C	T	25
PHF21B	112885	genome.wustl.edu	36	22	43670621	43670621	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1509-01	TCGA-13-1509-10	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	43670621	43670621	PHF21B	22	C	C	T	27
LTBP4	8425	genome.wustl.edu	36	19	45807382	45807382	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-13-1509-01	TCGA-13-1509-10	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Silent	SNP	45807382	45807382	LTBP4	19	C	C	G	29
PPYR1	5540	genome.wustl.edu	36	10	46507166	46507166	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1509-01	TCGA-13-1509-10	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	46507166	46507166	PPYR1	10	C	C	T	19
DDX23	9416	genome.wustl.edu	36	12	47513508	47513508	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-1509-01	TCGA-13-1509-10	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	47513508	47513508	DDX23	12	C	C	A	28
CD2AP	23607	genome.wustl.edu	36	6	47681952	47681952	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1509-01	TCGA-13-1509-10	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	47681952	47681952	CD2AP	6	C	C	T	23
PKD1L1	168507	genome.wustl.edu	36	7	47843084	47843084	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-1509-01	TCGA-13-1509-10	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	47843084	47843084	PKD1L1	7	G	G	C	38
RB1	5925	genome.wustl.edu	36	13	47937406	47937422	+	Indel	Indel	TACGGATTCCTGGAGGG	TACGGATTCCTGGAGGG	-	novel	Unknown	TCGA-13-1509-01	TCGA-13-1509-10	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	WashU	Indel	Indel	47937406	47937422	RB1	13	TACGGATTCCTGGAGGG	TACGGATTCCTGGAGGG	-	61
TTLL8	164714	genome.wustl.edu	36	22	48821802	48821802	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-1509-01	TCGA-13-1509-10	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	48821802	48821802	TTLL8	22	T	T	C	51
MOV10L1	54456	genome.wustl.edu	36	22	48906086	48906086	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-1509-01	TCGA-13-1509-10	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	48906086	48906086	MOV10L1	22	G	G	T	44
BSN	8927	genome.wustl.edu	36	3	49670021	49670021	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-1509-01	TCGA-13-1509-10	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Silent	SNP	49670021	49670021	BSN	3	G	G	A	39
OPRK1	4986	genome.wustl.edu	36	8	54304520	54304520	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-1509-01	TCGA-13-1509-10	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	54304520	54304520	OPRK1	8	A	A	G	7
ZBP1	81030	genome.wustl.edu	36	20	55623466	55623466	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1509-01	TCGA-13-1509-10	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	55623466	55623466	ZBP1	20	C	C	T	27
OS9	10956	genome.wustl.edu	36	12	56398264	56398265	+	Missense	DNP	GA	GA	TT	novel	Unknown	TCGA-13-1509-01	TCGA-13-1509-10	GA	GA	GA	TT	GA	GA	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense	DNP	56398264	56398265	OS9	12	GA	GA	TT	33
AASDH	132949	genome.wustl.edu	36	4	56899386	56899386	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-1509-01	TCGA-13-1509-10	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	56899386	56899386	AASDH	4	A	A	G	4
ZNF577	84765	genome.wustl.edu	36	19	57068423	57068423	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-1509-01	TCGA-13-1509-10	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	57068423	57068423	ZNF577	19	T	T	C	54
PRPF31	26121	genome.wustl.edu	36	19	59319829	59319829	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-1509-01	TCGA-13-1509-10	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Silent	SNP	59319829	59319829	PRPF31	19	C	C	T	31
ENSG00000166104		genome.wustl.edu	36	15	60326813	60326813	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1509-01	TCGA-13-1509-10	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	60326813	60326813	ENSG00000166104	15	C	C	T	23
MDM1	56890	genome.wustl.edu	36	12	67006998	67006998	+	Silent	SNP	A	A	C	novel	Unknown	TCGA-13-1509-01	TCGA-13-1509-10	A	A	A	C	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Silent	SNP	67006998	67006998	MDM1	12	A	A	C	11
SLC4A4	8671	genome.wustl.edu	36	4	72535849	72535849	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-1509-01	TCGA-13-1509-10	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	72535849	72535849	SLC4A4	4	A	A	T	8
ZNF711	7552	genome.wustl.edu	36	X	84413035	84413035	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-1509-01	TCGA-13-1509-10	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	84413035	84413035	ZNF711	23	T	T	C	50
AGTPBP1	23287	genome.wustl.edu	36	9	87390234	87390234	+	Silent	SNP	T	T	A	novel	Unknown	TCGA-13-1509-01	TCGA-13-1509-10	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Silent	SNP	87390234	87390234	AGTPBP1	9	T	T	A	63
EML5	161436	genome.wustl.edu	36	14	88275019	88275019	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-13-1509-01	TCGA-13-1509-10	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Silent	SNP	88275019	88275019	EML5	14	T	T	C	63
FAT3	120114	genome.wustl.edu	36	11	92172530	92172530	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-13-1509-01	TCGA-13-1509-10	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	92172530	92172530	FAT3	11	T	T	G	56
BRDT	676	genome.wustl.edu	36	1	92214479	92214479	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-13-1509-01	TCGA-13-1509-10	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	92214479	92214479	BRDT	1	T	T	G	52
C6orf167	253714	genome.wustl.edu	36	6	97727664	97727664	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-1509-01	TCGA-13-1509-10	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	97727664	97727664	C6orf167	6	C	C	G	29
ZSCAN21	7589	genome.wustl.edu	36	7	99499717	99499717	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-13-1509-01	TCGA-13-1509-10	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Silent	SNP	99499717	99499717	ZSCAN21	7	C	C	G	22
CENPE	1062	genome.wustl.edu	36	4	104249486	104249486	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-1509-01	TCGA-13-1509-10	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	104249486	104249486	CENPE	4	A	A	G	1
CXorf57	55086	genome.wustl.edu	36	X	105755132	105755132	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1509-01	TCGA-13-1509-10	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	105755132	105755132	CXorf57	23	C	C	T	22
PIK3CG	5294	genome.wustl.edu	36	7	106296377	106296377	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-1509-01	TCGA-13-1509-10	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	106296377	106296377	PIK3CG	7	C	C	A	24
ST6GAL2	84620	genome.wustl.edu	36	2	106815517	106815517	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1509-01	TCGA-13-1509-10	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	106815517	106815517	ST6GAL2	2	G	G	A	45
DDX18	8886	genome.wustl.edu	36	2	118303345	118303345	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-1509-01	TCGA-13-1509-10	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	118303345	118303345	DDX18	2	T	T	C	63
ARHGAP31	57514	genome.wustl.edu	36	3	120615793	120615793	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-13-1509-01	TCGA-13-1509-10	A	A	A	C	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	120615793	120615793	ARHGAP31	3	A	A	C	4
MAPKAP1	79109	genome.wustl.edu	36	9	127270182	127270182	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-1509-01	TCGA-13-1509-10	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	127270182	127270182	MAPKAP1	9	T	T	C	58
MAP3K2	10746	genome.wustl.edu	36	2	127788865	127788865	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-1509-01	TCGA-13-1509-10	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	127788865	127788865	MAP3K2	2	G	G	C	44
LAMA2	3908	genome.wustl.edu	36	6	129754469	129754469	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1509-01	TCGA-13-1509-10	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	129754469	129754469	LAMA2	6	G	G	A	41
SLC37A3	84255	genome.wustl.edu	36	7	139728729	139728729	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1509-01	TCGA-13-1509-10	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	139728729	139728729	SLC37A3	7	C	C	T	20
PCDHB18	54660	genome.wustl.edu	36	5	140595205	140595205	+	Missense_Mutation	SNP	G	A	A	novel	Unknown	TCGA-13-1509-01	TCGA-13-1509-10	G	G	A	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	140595205	140595205	PCDHB18	5	G	A	A	37
MGST2	4258	genome.wustl.edu	36	4	140844720	140844720	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-1509-01	TCGA-13-1509-10	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	140844720	140844720	MGST2	4	A	A	T	5
INPP4B	8821	genome.wustl.edu	36	4	143262846	143262846	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-1509-01	TCGA-13-1509-10	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	143262846	143262846	INPP4B	4	C	C	A	31
OR2F1	26211	genome.wustl.edu	36	7	143288443	143288443	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-1509-01	TCGA-13-1509-10	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	143288443	143288443	OR2F1	7	G	G	T	43
CNTNAP2	26047	genome.wustl.edu	36	7	146460357	146460357	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-13-1509-01	TCGA-13-1509-10	A	A	A	C	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	146460357	146460357	CNTNAP2	7	A	A	C	13
HIST2H3PS2	440686	genome.wustl.edu	36	1	147667142	147667142	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1509-01	TCGA-13-1509-10	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	147667142	147667142	HIST2H3PS2	1	G	G	A	39
MBD5	55777	genome.wustl.edu	36	2	148964276	148964276	+	Silent	SNP	A	A	C	novel	Unknown	TCGA-13-1509-01	TCGA-13-1509-10	A	A	A	C	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Silent	SNP	148964276	148964276	MBD5	2	A	A	C	11
ZNF687	57592	genome.wustl.edu	36	1	149525896	149525896	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1509-01	TCGA-13-1509-10	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	149525896	149525896	ZNF687	1	G	G	A	45
HPS3	84343	genome.wustl.edu	36	3	150368384	150368384	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-13-1509-01	TCGA-13-1509-10	A	A	A	C	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	150368384	150368384	HPS3	3	A	A	C	1
CP	1356	genome.wustl.edu	36	3	150413013	150413013	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-13-1509-01	TCGA-13-1509-10	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Silent	SNP	150413013	150413013	CP	3	A	A	G	16
LOC100130935		genome.wustl.edu	36	X	151647365	151647365	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-13-1509-01	TCGA-13-1509-10	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Silent	SNP	151647365	151647365	LOC100130935	23	G	G	T	35
FLAD1	80308	genome.wustl.edu	36	1	153227424	153227424	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-1509-01	TCGA-13-1509-10	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	153227424	153227424	FLAD1	1	G	G	C	45
FCRL3	115352	genome.wustl.edu	36	1	155933778	155933778	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-1509-01	TCGA-13-1509-10	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	155933778	155933778	FCRL3	1	A	A	T	8
PIGM	93183	genome.wustl.edu	36	1	158267377	158267377	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-13-1509-01	TCGA-13-1509-10	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Silent	SNP	158267377	158267377	PIGM	1	A	A	G	1
SCN2A	6326	genome.wustl.edu	36	2	165878420	165878420	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1509-01	TCGA-13-1509-10	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	165878420	165878420	SCN2A	2	C	C	T	22
SCN1A	6323	genome.wustl.edu	36	2	166560775	166560775	+	Silent	SNP	T	T	A	novel	Unknown	TCGA-13-1509-01	TCGA-13-1509-10	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Silent	SNP	166560775	166560775	SCN1A	2	T	T	A	58
CDHR2	54825	genome.wustl.edu	36	5	175924986	175924986	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-1509-01	TCGA-13-1509-10	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	WashU	Silent	SNP	175924986	175924986	CDHR2	5	C	C	T	30
HK3	3101	genome.wustl.edu	36	5	176255732	176255732	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1509-01	TCGA-13-1509-10	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	176255732	176255732	HK3	5	C	C	T	22
TTN	7273	genome.wustl.edu	36	2	179324750	179324750	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-1509-01	TCGA-13-1509-10	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	179324750	179324750	TTN	2	T	T	A	52
LAMC1	3915	genome.wustl.edu	36	1	181346371	181346371	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-1509-01	TCGA-13-1509-10	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	181346371	181346371	LAMC1	1	C	C	G	23
NCF2	4688	genome.wustl.edu	36	1	181810245	181810245	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-1509-01	TCGA-13-1509-10	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	181810245	181810245	NCF2	1	C	C	G	22
LRCH3	84859	genome.wustl.edu	36	3	199043532	199043532	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-1509-01	TCGA-13-1509-10	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	199043532	199043532	LRCH3	3	G	G	C	33
LMOD1	25802	genome.wustl.edu	36	1	200135833	200135833	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1509-01	TCGA-13-1509-10	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	200135833	200135833	LMOD1	1	C	C	T	30
ARL8A	127829	genome.wustl.edu	36	1	200371488	200371488	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-13-1509-01	TCGA-13-1509-10	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Silent	SNP	200371488	200371488	ARL8A	1	T	T	C	57
CENPF	1063	genome.wustl.edu	36	1	212882202	212882202	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-1509-01	TCGA-13-1509-10	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Silent	SNP	212882202	212882202	CENPF	1	C	C	T	28
RHBDD1	84236	genome.wustl.edu	36	2	227487240	227487240	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-1509-01	TCGA-13-1509-10	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	227487240	227487240	RHBDD1	2	A	A	G	10
SP110	3431	genome.wustl.edu	36	2	230745064	230745064	+	Nonsense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-1509-01	TCGA-13-1509-10	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Nonsense_Mutation	SNP	230745064	230745064	SP110	2	T	T	A	61
KIF26B	55083	genome.wustl.edu	36	1	243928855	243928855	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1509-01	TCGA-13-1509-10	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	243928855	243928855	KIF26B	1	G	G	A	38
TP53	7157	genome.wustl.edu	36	17	7517583	7517583	+	Frame_Shift_Del	DEL	G	G	-	novel	Unknown	TCGA-13-1509-01	TCGA-13-1509-10	G	G	G	-	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Frame_Shift_Del	DEL	7517583	7517583	TP53	17	G	G	-	35
C1orf144	26099	genome.wustl.edu	36	1	16592355	16592356	+	Frame_Shift_Ins	INS	-	-	ATTGT	novel	Unknown	TCGA-13-1509-01	TCGA-13-1509-10	-	-					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	WashU	Frame_Shift_Ins	INS	16592355	16592356	C1orf144	1	-	-	ATTGT	19
G2E3	55632	genome.wustl.edu	36	14	30128370	30128374	+	Frame_Shift_Del	DEL	AAAGA	AAAGA	-	novel	Unknown	TCGA-13-1509-01	TCGA-13-1509-10	AAAGA	AAAGA	AAAGA	-	AAAGA	AAAGA	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Frame_Shift_Del	DEL	30128370	30128374	G2E3	14	AAAGA	AAAGA	-	5
CYP2B6	1555	genome.wustl.edu	36	19	46210210	46210210	+	Nonsense_Mutation	SNP	C	C	T	rs34097093	Unknown	TCGA-13-1509-01	TCGA-13-1509-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA		dbGAP	Illumina GAIIx	WashU	Nonsense_Mutation	SNP	46210210	46210210	CYP2B6	19	C	C	T	23
COL13A1	1305	genome.wustl.edu	36	10	71348079	71348079	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-1509-01	TCGA-13-1509-10	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Silent	SNP	71348079	71348079	COL13A1	10	G	G	A	35
IGHM		genome.wustl.edu	36	14	105391761	105391761	+	Nonsense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-1509-01	TCGA-13-1509-10	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Nonsense_Mutation	SNP	105391761	105391761	IGHM	14	C	C	A	21
WDR24	84219	genome.wustl.edu	36	16	679276	679276	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-1509-01	TCGA-13-1509-10	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Silent	SNP	679276	679276	WDR24	16	C	C	T	23
KLHL26	55295	genome.wustl.edu	36	19	18640040	18640040	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1509-01	TCGA-13-1509-10	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	18640040	18640040	KLHL26	19	G	G	A	38
PPM1F	9647	genome.wustl.edu	36	22	20617785	20617785	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-1509-01	TCGA-13-1509-10	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	20617785	20617785	PPM1F	22	A	A	G	1
SCN10A	6336	genome.wustl.edu	36	3	38768977	38768977	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1509-01	TCGA-13-1509-10	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	38768977	38768977	SCN10A	3	G	G	A	39
FAM90A10	441328	genome.wustl.edu	36	8	7664674	7664674	+	Missense_Mutation	SNP	C	A	A	novel	Unknown	TCGA-13-1509-01	TCGA-13-1509-10	C	C	A	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	7664674	7664674	FAM90A10	8	C	A	A	26
HLA-A	3105	genome.wustl.edu	36	6	30018561	30018576	+	Frame_Shift_Del	DEL	GCGGGGAGCCCCGCTT	GCGGGGAGCCCCGCTT	-		Unknown	TCGA-13-1509-01	TCGA-13-1509-10	GCGGGGAGCCCCGCTT	GCGGGGAGCCCCGCTT	GCGGGGAGCCCCGCTT	-	GCGGGGAGCCCCGCTT	GCGGGGAGCCCCGCTT	Unknown	Valid	Somatic	PhaseIII	Capture		1	dbGAP	Illumina GAIIx	WashU	Frame_Shift_Del	DEL	30018561	30018576	HLA-A	6	GCGGGGAGCCCCGCTT	GCGGGGAGCCCCGCTT	-	38
