Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	dataset	type	classification	start	end	gene	chr	ref_allele	tum_allele1	tum_allele2	context
RNF207	388591	broad.mit.edu	36	1	6193033	6193033	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-23-1030-01	TCGA-23-1030-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	6193033	6193033	RNF207	1	G	G	T	46
L1TD1	54596	broad.mit.edu	36	1	62448356	62448356	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-23-1030-01	TCGA-23-1030-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	62448356	62448356	L1TD1	1	A	A	G	9
CLCA4	22802	broad.mit.edu	36	1	86804090	86804090	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-23-1030-01	TCGA-23-1030-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	86804090	86804090	CLCA4	1	C	C	T	19
CCDC76	54482	broad.mit.edu	36	1	100386036	100386036	+	Splice_Site_SNP	SNP	A	A	C	novel	Unknown	TCGA-23-1030-01	TCGA-23-1030-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Splice_Site_SNP	SNP	100386036	100386036	CCDC76	1	A	A	C	7
HIST2H2BE	8349	broad.mit.edu	36	1	148124459	148124459	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-23-1030-01	TCGA-23-1030-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	148124459	148124459	HIST2H2BE	1	A	A	G	10
SCAMP3	10067	broad.mit.edu	36	1	153494040	153494040	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-23-1030-01	TCGA-23-1030-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	153494040	153494040	SCAMP3	1	C	C	T	27
OR5D16	390144	broad.mit.edu	36	11	55363156	55363156	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-23-1030-01	TCGA-23-1030-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	55363156	55363156	OR5D16	11	C	C	T	27
ANO1	55107	broad.mit.edu	36	11	69649920	69649920	+	Silent	SNP	A	A	T	novel	Unknown	TCGA-23-1030-01	TCGA-23-1030-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	69649920	69649920	ANO1	11	A	A	T	12
SLC37A2	219855	broad.mit.edu	36	11	124459931	124459931	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-23-1030-01	TCGA-23-1030-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	124459931	124459931	SLC37A2	11	A	A	G	12
NTM	50863	broad.mit.edu	36	11	131521429	131521429	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-23-1030-01	TCGA-23-1030-10			C	T	C	C	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	Broad	Missense_Mutation	SNP	131521429	131521429	NTM	11	C	C	T	23
FAM113B	91523	broad.mit.edu	36	12	45916107	45916107	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-23-1030-01	TCGA-23-1030-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	45916107	45916107	FAM113B	12	C	C	T	23
BRCA2	675	broad.mit.edu	36	13	31810553	31810553	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-23-1030-01	TCGA-23-1030-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	31810553	31810553	BRCA2	13	C	C	T	19
SEC23A	10484	broad.mit.edu	36	14	38635059	38635059	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-23-1030-01	TCGA-23-1030-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	38635059	38635059	SEC23A	14	C	C	A	21
DLST	1743	broad.mit.edu	36	14	74437622	74437622	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-23-1030-01	TCGA-23-1030-10			A	G	A	A	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	Broad	Missense_Mutation	SNP	74437622	74437622	DLST	14	A	A	G	2
EVL	51466	broad.mit.edu	36	14	99664688	99664688	+	Silent	SNP	A	A	C	novel	Unknown	TCGA-23-1030-01	TCGA-23-1030-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	99664688	99664688	EVL	14	A	A	C	6
IGDCC3	9543	broad.mit.edu	36	15	63411438	63411438	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-23-1030-01	TCGA-23-1030-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	63411438	63411438	IGDCC3	15	T	T	A	51
BLM	641	broad.mit.edu	36	15	89113754	89113754	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-23-1030-01	TCGA-23-1030-10			C	T	C	C	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	Broad	Missense_Mutation	SNP	89113754	89113754	BLM	15	C	C	T	19
ZNF434	54925	broad.mit.edu	36	16	3374789	3374789	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-23-1030-01	TCGA-23-1030-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	3374789	3374789	ZNF434	16	G	G	A	44
CLEC18B	497190	broad.mit.edu	36	16	73005011	73005011	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-23-1030-01	TCGA-23-1030-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	73005011	73005011	CLEC18B	16	G	G	A	38
TP53	7157	broad.mit.edu	36	17	7519131	7519131	+	Missense_Mutation	SNP	C	C	T	rs28934578	Unknown	TCGA-23-1030-01	TCGA-23-1030-10			C	T	C	C	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	Broad	Missense_Mutation	SNP	7519131	7519131	TP53	17	C	C	T	27
RSAD1	55316	broad.mit.edu	36	17	45915745	45915745	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-23-1030-01	TCGA-23-1030-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	45915745	45915745	RSAD1	17	G	G	A	39
MAP2K2	5605	broad.mit.edu	36	19	4068441	4068441	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-23-1030-01	TCGA-23-1030-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	4068441	4068441	MAP2K2	19	G	G	A	35
NAT8B	51471	broad.mit.edu	36	2	73781447	73781447	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-23-1030-01	TCGA-23-1030-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	73781447	73781447	NAT8B	2	G	G	A	42
C20orf117	140710	broad.mit.edu	36	20	34858719	34858719	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-23-1030-01	TCGA-23-1030-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	34858719	34858719	C20orf117	20	A	A	G	5
VGLL4	9686	broad.mit.edu	36	3	11618368	11618368	+	Nonsense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-23-1030-01	TCGA-23-1030-10			C	A	C	C	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	Broad	Nonsense_Mutation	SNP	11618368	11618368	VGLL4	3	C	C	A	31
C3orf39	84892	broad.mit.edu	36	3	43096740	43096740	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-23-1030-01	TCGA-23-1030-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	43096740	43096740	C3orf39	3	C	C	T	29
FLNB	2317	broad.mit.edu	36	3	58072963	58072963	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-23-1030-01	TCGA-23-1030-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	58072963	58072963	FLNB	3	G	G	C	42
TMPRSS7	344805	broad.mit.edu	36	3	113278420	113278420	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-23-1030-01	TCGA-23-1030-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	113278420	113278420	TMPRSS7	3	G	G	C	33
UROC1	131669	broad.mit.edu	36	3	127702316	127702316	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-23-1030-01	TCGA-23-1030-10			C	T	C	C	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	Broad	Missense_Mutation	SNP	127702316	127702316	UROC1	3	C	C	T	23
SLC10A4	201780	broad.mit.edu	36	4	48180902	48180903	+	Missense_Mutation	DNP	GG	GG	AC	novel	Unknown	TCGA-23-1030-01	TCGA-23-1030-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	DNP	48180902	48180903	SLC10A4	4	GG	GG	AC	47
AMBN	258	broad.mit.edu	36	4	71506678	71506678	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-23-1030-01	TCGA-23-1030-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	71506678	71506678	AMBN	4	C	C	T	23
MAST4	375449	broad.mit.edu	36	5	66484432	66484432	+	Silent	SNP	A	A	T	novel	Unknown	TCGA-23-1030-01	TCGA-23-1030-10			A	T	A	A	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	Broad	Silent	SNP	66484432	66484432	MAST4	5	A	A	T	7
PCDHGA10	56106	broad.mit.edu	36	5	140773414	140773414	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-23-1030-01	TCGA-23-1030-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	140773414	140773414	PCDHGA10	5	A	A	C	12
HIST1H1T	3010	broad.mit.edu	36	6	26215966	26215966	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-23-1030-01	TCGA-23-1030-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	26215966	26215966	HIST1H1T	6	C	C	G	20
HSPA1L	3305	broad.mit.edu	36	6	31886993	31886993	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-23-1030-01	TCGA-23-1030-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	31886993	31886993	HSPA1L	6	C	C	G	30
FHL5	9457	broad.mit.edu	36	6	97158240	97158240	+	Nonsense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-23-1030-01	TCGA-23-1030-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Nonsense_Mutation	SNP	97158240	97158240	FHL5	6	C	C	A	20
ALDH8A1	64577	broad.mit.edu	36	6	135281568	135281568	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-23-1030-01	TCGA-23-1030-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	135281568	135281568	ALDH8A1	6	A	A	C	4
ZNF107	51427	broad.mit.edu	36	7	63804233	63804233	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-23-1030-01	TCGA-23-1030-10			A	T	A	A	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	Broad	Missense_Mutation	SNP	63804233	63804233	ZNF107	7	A	A	T	16
LRRC4	64101	broad.mit.edu	36	7	127457729	127457729	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-23-1030-01	TCGA-23-1030-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	127457729	127457729	LRRC4	7	G	G	A	39
NRG1	3084	broad.mit.edu	36	8	32740361	32740361	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-23-1030-01	TCGA-23-1030-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	32740361	32740361	NRG1	8	G	G	T	33
TG	7038	broad.mit.edu	36	8	134111322	134111322	+	Nonsense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-23-1030-01	TCGA-23-1030-10			C	T	C	C	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	Broad	Nonsense_Mutation	SNP	134111322	134111322	TG	8	C	C	T	23
AKNA	80709	broad.mit.edu	36	9	116153002	116153002	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-23-1030-01	TCGA-23-1030-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	116153002	116153002	AKNA	9	G	G	C	48
TOR1A	1861	broad.mit.edu	36	9	131620928	131620928	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-23-1030-01	TCGA-23-1030-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	131620928	131620928	TOR1A	9	G	G	A	45
TSPAN7	7102	broad.mit.edu	36	X	38415583	38415583	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-23-1030-01	TCGA-23-1030-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	38415583	38415583	TSPAN7	23	T	T	A	60
PHRF1	57661	broad.mit.edu	36	11	598503	598514	+	In_Frame_Del	DEL	GGACGCGCTCTG	-	GGACGCGCTCTG	novel	Unknown	TCGA-23-1030-01	TCGA-23-1030-10							Unknown	Unknown	Unknown	Phase_I	Capture	---			Illumina GAIIx	Broad	In_Frame_Del	DEL	598503	598514	PHRF1	11	GGACGCGCTCTG	-	GGACGCGCTCTG	39
SSPO	23145	broad.mit.edu	36	7	149146122	149146122	+	Frame_Shift_Del	DEL	A	-	A	novel	Unknown	TCGA-23-1030-01	TCGA-23-1030-10							Unknown	Unknown	Unknown	Phase_I	Capture	---			Illumina GAIIx	Broad	Frame_Shift_Del	DEL	149146122	149146122	SSPO	7	A	-	A	13
RB1CC1	9821	broad.mit.edu	36	8	53731173	53731175	+	In_Frame_Del	DEL	CAA	-	CAA	novel	Unknown	TCGA-23-1030-01	TCGA-23-1030-10							Unknown	Unknown	Unknown	Phase_I	Capture	---			Illumina GAIIx	Broad	In_Frame_Del	DEL	53731173	53731175	RB1CC1	8	CAA	-	CAA	29
