Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	dataset	type	classification	start	end	gene	chr	ref_allele	tum_allele1	tum_allele2	context
LRRC47	57470	broad.mit.edu	36	1	3687746	3687746	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-59-2352-01	TCGA-59-2352-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	3687746	3687746	LRRC47	1	C	C	G	29
NPPB	4879	broad.mit.edu	36	1	11840951	11840951	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-59-2352-01	TCGA-59-2352-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	11840951	11840951	NPPB	1	G	G	A	38
ATP13A2	23400	broad.mit.edu	36	1	17203442	17203442	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-59-2352-01	TCGA-59-2352-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	17203442	17203442	ATP13A2	1	C	C	T	31
COL16A1	1307	broad.mit.edu	36	1	31898820	31898820	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-59-2352-01	TCGA-59-2352-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	31898820	31898820	COL16A1	1	G	G	A	44
GRIK3	2899	broad.mit.edu	36	1	37129116	37129116	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-59-2352-01	TCGA-59-2352-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	37129116	37129116	GRIK3	1	G	G	C	44
CCDC30	728621	broad.mit.edu	36	1	42883054	42883054	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-59-2352-01	TCGA-59-2352-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	42883054	42883054	CCDC30	1	C	C	T	31
GBP3	2635	broad.mit.edu	36	1	89251537	89251537	+	Nonsense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-59-2352-01	TCGA-59-2352-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Nonsense_Mutation	SNP	89251537	89251537	GBP3	1	G	G	A	48
LRRC8B	23507	broad.mit.edu	36	1	89820905	89820905	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-59-2352-01	TCGA-59-2352-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	89820905	89820905	LRRC8B	1	G	G	T	46
SCAMP3	10067	broad.mit.edu	36	1	153498143	153498143	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-59-2352-01	TCGA-59-2352-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	153498143	153498143	SCAMP3	1	C	C	G	28
C1orf116	79098	broad.mit.edu	36	1	205263026	205263026	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-59-2352-01	TCGA-59-2352-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	205263026	205263026	C1orf116	1	A	A	G	11
CHML	1122	broad.mit.edu	36	1	239864667	239864667	+	Nonsense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-59-2352-01	TCGA-59-2352-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Nonsense_Mutation	SNP	239864667	239864667	CHML	1	G	G	T	45
OR2M5	127059	broad.mit.edu	36	1	246375175	246375175	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-59-2352-01	TCGA-59-2352-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	246375175	246375175	OR2M5	1	T	T	A	56
SFMBT2	57713	broad.mit.edu	36	10	7452280	7452280	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-59-2352-01	TCGA-59-2352-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	7452280	7452280	SFMBT2	10	G	G	A	46
ZEB1	6935	broad.mit.edu	36	10	31849192	31849192	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-59-2352-01	TCGA-59-2352-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	31849192	31849192	ZEB1	10	C	C	T	17
A1CF	29974	broad.mit.edu	36	10	52258002	52258002	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-59-2352-01	TCGA-59-2352-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	52258002	52258002	A1CF	10	C	C	G	20
PCDH15	65217	broad.mit.edu	36	10	55238468	55238468	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-59-2352-01	TCGA-59-2352-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	55238468	55238468	PCDH15	10	G	G	C	48
CCDC6	8030	broad.mit.edu	36	10	61244426	61244426	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-59-2352-01	TCGA-59-2352-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	61244426	61244426	CCDC6	10	C	C	A	28
PLAC9	219348	broad.mit.edu	36	10	81893998	81893998	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-59-2352-01	TCGA-59-2352-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	81893998	81893998	PLAC9	10	A	A	G	9
PKD2L1	9033	broad.mit.edu	36	10	102041049	102041049	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-59-2352-01	TCGA-59-2352-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	102041049	102041049	PKD2L1	10	C	C	G	24
ADD3	120	broad.mit.edu	36	10	111869023	111869023	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-59-2352-01	TCGA-59-2352-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	111869023	111869023	ADD3	10	C	C	T	26
CDHR5	53841	broad.mit.edu	36	11	611393	611393	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-59-2352-01	TCGA-59-2352-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	611393	611393	CDHR5	11	G	G	A	43
OR52A4	390053	broad.mit.edu	36	11	5098539	5098539	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-59-2352-01	TCGA-59-2352-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	5098539	5098539	OR52A4	11	G	G	C	41
RBM7	10179	broad.mit.edu	36	11	113778779	113778779	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-59-2352-01	TCGA-59-2352-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	113778779	113778779	RBM7	11	A	A	G	3
CDON	50937	broad.mit.edu	36	11	125381080	125381080	+	Silent	SNP	A	A	C	novel	Unknown	TCGA-59-2352-01	TCGA-59-2352-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	125381080	125381080	CDON	11	A	A	C	2
IFLTD1	160492	broad.mit.edu	36	12	25564158	25564158	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-59-2352-01	TCGA-59-2352-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	25564158	25564158	IFLTD1	12	C	C	G	21
LRRK2	120892	broad.mit.edu	36	12	38990519	38990519	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-59-2352-01	TCGA-59-2352-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	38990519	38990519	LRRK2	12	C	C	T	24
PTPRB	5787	broad.mit.edu	36	12	69315912	69315912	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-59-2352-01	TCGA-59-2352-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	69315912	69315912	PTPRB	12	C	C	T	27
LIN7A	8825	broad.mit.edu	36	12	79729529	79729529	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-59-2352-01	TCGA-59-2352-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	79729529	79729529	LIN7A	12	T	T	C	56
TMEM132B	114795	broad.mit.edu	36	12	124704761	124704761	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-59-2352-01	TCGA-59-2352-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	124704761	124704761	TMEM132B	12	G	G	C	35
ARHGAP5	394	broad.mit.edu	36	14	31632657	31632657	+	Silent	SNP	A	A	C	novel	Unknown	TCGA-59-2352-01	TCGA-59-2352-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	31632657	31632657	ARHGAP5	14	A	A	C	15
CLEC14A	161198	broad.mit.edu	36	14	37794073	37794073	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-59-2352-01	TCGA-59-2352-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	37794073	37794073	CLEC14A	14	G	G	C	47
MIA2	117153	broad.mit.edu	36	14	38792090	38792090	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-59-2352-01	TCGA-59-2352-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	38792090	38792090	MIA2	14	T	T	A	52
SIX1	6495	broad.mit.edu	36	14	60182811	60182811	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-59-2352-01	TCGA-59-2352-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	60182811	60182811	SIX1	14	C	C	A	28
SLC10A1	6554	broad.mit.edu	36	14	69314964	69314964	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-59-2352-01	TCGA-59-2352-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	69314964	69314964	SLC10A1	14	T	T	G	63
PPP1R13B	23368	broad.mit.edu	36	14	103289126	103289126	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-59-2352-01	TCGA-59-2352-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	103289126	103289126	PPP1R13B	14	C	C	T	23
TP53BP1	7158	broad.mit.edu	36	15	41511874	41511874	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-59-2352-01	TCGA-59-2352-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	41511874	41511874	TP53BP1	15	A	A	C	8
TEKT5	146279	broad.mit.edu	36	16	10628965	10628965	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-59-2352-01	TCGA-59-2352-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	10628965	10628965	TEKT5	16	G	G	A	43
LOC81691	81691	broad.mit.edu	36	16	20740700	20740700	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-59-2352-01	TCGA-59-2352-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	20740700	20740700	LOC81691	16	G	G	C	45
GPR97	222487	broad.mit.edu	36	16	56275606	56275606	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-59-2352-01	TCGA-59-2352-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	56275606	56275606	GPR97	16	G	G	T	34
ZNF594	84622	broad.mit.edu	36	17	5027025	5027025	+	Silent	SNP	T	T	A	novel	Unknown	TCGA-59-2352-01	TCGA-59-2352-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	5027025	5027025	ZNF594	17	T	T	A	55
DLG4	1742	broad.mit.edu	36	17	7040849	7040849	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-59-2352-01	TCGA-59-2352-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	7040849	7040849	DLG4	17	C	C	T	26
TP53	7157	broad.mit.edu	36	17	7517866	7517866	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-59-2352-01	TCGA-59-2352-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	7517866	7517866	TP53	17	C	C	A	30
KRT25	147183	broad.mit.edu	36	17	36160222	36160222	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-59-2352-01	TCGA-59-2352-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	36160222	36160222	KRT25	17	C	C	T	30
GOSR2	9570	broad.mit.edu	36	17	42367462	42367462	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-59-2352-01	TCGA-59-2352-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	42367462	42367462	GOSR2	17	C	C	T	19
MIB1	57534	broad.mit.edu	36	18	17575693	17575693	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-59-2352-01	TCGA-59-2352-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	17575693	17575693	MIB1	18	G	G	C	36
RTTN	25914	broad.mit.edu	36	18	65910378	65910378	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-59-2352-01	TCGA-59-2352-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	65910378	65910378	RTTN	18	G	G	C	36
COL5A3	50509	broad.mit.edu	36	19	9945882	9945882	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-59-2352-01	TCGA-59-2352-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	9945882	9945882	COL5A3	19	C	C	T	22
ZNF468	90333	broad.mit.edu	36	19	58036158	58036158	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-59-2352-01	TCGA-59-2352-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	58036158	58036158	ZNF468	19	G	G	C	48
ZNF321	399669	broad.mit.edu	36	19	58124377	58124377	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-59-2352-01	TCGA-59-2352-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	58124377	58124377	ZNF321	19	A	A	T	4
BIRC6	57448	broad.mit.edu	36	2	32493924	32493924	+	Nonsense_Mutation	SNP	C	C	G	rs3769599	byCluster;byFrequency;byHapMap	TCGA-59-2352-01	TCGA-59-2352-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Nonsense_Mutation	SNP	32493924	32493924	BIRC6	2	C	C	G	17
GLI2	2736	broad.mit.edu	36	2	121452516	121452516	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-59-2352-01	TCGA-59-2352-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	121452516	121452516	GLI2	2	G	G	C	41
ZEB2	9839	broad.mit.edu	36	2	144878083	144878083	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-59-2352-01	TCGA-59-2352-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	144878083	144878083	ZEB2	2	A	A	G	7
NCAM2	4685	broad.mit.edu	36	21	21578592	21578592	+	Splice_Site_SNP	SNP	G	G	A	novel	Unknown	TCGA-59-2352-01	TCGA-59-2352-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Splice_Site_SNP	SNP	21578592	21578592	NCAM2	21	G	G	A	40
SLC5A3	6526	broad.mit.edu	36	21	34390965	34390965	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-59-2352-01	TCGA-59-2352-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	34390965	34390965	SLC5A3	21	C	C	A	17
TNRC6B	23112	broad.mit.edu	36	22	38991429	38991429	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-59-2352-01	TCGA-59-2352-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	38991429	38991429	TNRC6B	22	C	C	G	31
ACO2	50	broad.mit.edu	36	22	40252281	40252281	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-59-2352-01	TCGA-59-2352-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	40252281	40252281	ACO2	22	G	G	A	41
SETD5	55209	broad.mit.edu	36	3	9487490	9487490	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-59-2352-01	TCGA-59-2352-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	9487490	9487490	SETD5	3	A	A	G	12
EPM2AIP1	9852	broad.mit.edu	36	3	37009561	37009561	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-59-2352-01	TCGA-59-2352-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	37009561	37009561	EPM2AIP1	3	C	C	G	27
TGM4	7047	broad.mit.edu	36	3	44927870	44927870	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-59-2352-01	TCGA-59-2352-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	44927870	44927870	TGM4	3	G	G	T	47
CD200R1	131450	broad.mit.edu	36	3	114131015	114131015	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-59-2352-01	TCGA-59-2352-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	114131015	114131015	CD200R1	3	T	T	C	57
DCUN1D1	54165	broad.mit.edu	36	3	184164449	184164449	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-59-2352-01	TCGA-59-2352-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	184164449	184164449	DCUN1D1	3	A	A	C	6
PI4K2B	55300	broad.mit.edu	36	4	24871247	24871247	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-59-2352-01	TCGA-59-2352-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	24871247	24871247	PI4K2B	4	G	G	C	35
FAM114A1	92689	broad.mit.edu	36	4	38583833	38583833	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-59-2352-01	TCGA-59-2352-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	38583833	38583833	FAM114A1	4	T	T	G	54
CCNI	10983	broad.mit.edu	36	4	78195418	78195418	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-59-2352-01	TCGA-59-2352-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	78195418	78195418	CCNI	4	G	G	C	41
NAA11	84779	broad.mit.edu	36	4	80465466	80465466	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-59-2352-01	TCGA-59-2352-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	80465466	80465466	NAA11	4	G	G	A	39
HSD17B11	51170	broad.mit.edu	36	4	88497455	88497455	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-59-2352-01	TCGA-59-2352-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	88497455	88497455	HSD17B11	4	C	C	A	24
ALPK1	80216	broad.mit.edu	36	4	113572444	113572444	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-59-2352-01	TCGA-59-2352-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	113572444	113572444	ALPK1	4	G	G	A	34
CDH9	1007	broad.mit.edu	36	5	27024174	27024174	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-59-2352-01	TCGA-59-2352-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	27024174	27024174	CDH9	5	T	T	C	51
DHX29	54505	broad.mit.edu	36	5	54628947	54628947	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-59-2352-01	TCGA-59-2352-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	54628947	54628947	DHX29	5	C	C	G	21
ANKRD32	84250	broad.mit.edu	36	5	94048166	94048166	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-59-2352-01	TCGA-59-2352-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	94048166	94048166	ANKRD32	5	C	C	G	32
FBXL21	26223	broad.mit.edu	36	5	135301012	135301012	+	Splice_Site_SNP	SNP	G	G	A	novel	Unknown	TCGA-59-2352-01	TCGA-59-2352-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Splice_Site_SNP	SNP	135301012	135301012	FBXL21	5	G	G	A	35
PCDHA2	56146	broad.mit.edu	36	5	140156377	140156377	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-59-2352-01	TCGA-59-2352-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	140156377	140156377	PCDHA2	5	C	C	T	19
PCDHA9	9752	broad.mit.edu	36	5	140209215	140209215	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-59-2352-01	TCGA-59-2352-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	140209215	140209215	PCDHA9	5	G	G	T	33
PCDHB13	56123	broad.mit.edu	36	5	140576137	140576138	+	Missense_Mutation	DNP	TG	TG	CT	novel	Unknown	TCGA-59-2352-01	TCGA-59-2352-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	DNP	140576137	140576138	PCDHB13	5	TG	TG	CT	59
RARS	5917	broad.mit.edu	36	5	167861609	167861609	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-59-2352-01	TCGA-59-2352-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	167861609	167861609	RARS	5	G	G	A	47
CUL9	23113	broad.mit.edu	36	6	43282121	43282121	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-59-2352-01	TCGA-59-2352-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	43282121	43282121	CUL9	6	C	C	T	19
CUL9	23113	broad.mit.edu	36	6	43282193	43282193	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-59-2352-01	TCGA-59-2352-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	43282193	43282193	CUL9	6	G	G	T	46
BAI3	577	broad.mit.edu	36	6	69780703	69780703	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-59-2352-01	TCGA-59-2352-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	69780703	69780703	BAI3	6	G	G	T	47
PRDM1	639	broad.mit.edu	36	6	106659812	106659812	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-59-2352-01	TCGA-59-2352-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	106659812	106659812	PRDM1	6	C	C	T	22
ARHGAP18	93663	broad.mit.edu	36	6	129946930	129946930	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-59-2352-01	TCGA-59-2352-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	129946930	129946930	ARHGAP18	6	C	C	G	29
IL20RA	53832	broad.mit.edu	36	6	137364667	137364667	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-59-2352-01	TCGA-59-2352-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	137364667	137364667	IL20RA	6	C	C	T	27
CNTNAP2	26047	broad.mit.edu	36	7	146460352	146460352	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-59-2352-01	TCGA-59-2352-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	146460352	146460352	CNTNAP2	7	G	G	A	39
CSMD3	114788	broad.mit.edu	36	8	114255270	114255270	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-59-2352-01	TCGA-59-2352-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	114255270	114255270	CSMD3	8	A	A	G	13
KLHL9	55958	broad.mit.edu	36	9	21323629	21323629	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-59-2352-01	TCGA-59-2352-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	21323629	21323629	KLHL9	9	A	A	G	7
KIAA2022	340533	broad.mit.edu	36	X	73877060	73877060	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-59-2352-01	TCGA-59-2352-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	73877060	73877060	KIAA2022	23	T	T	C	51
OCRL	4952	broad.mit.edu	36	X	128551809	128551809	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-59-2352-01	TCGA-59-2352-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	128551809	128551809	OCRL	23	C	C	T	32
