Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
SAMD11	148398	broad.mit.edu	37	1	861390	861390	+	Silent	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr1:861390G>C	uc001abw.1	+	2	149	c.69G>C	c.(67-69)CCG>CCC	p.P23P	SAMD11_uc001abv.1_Silent_p.P23P	NM_152486	NP_689699	Q96NU1	SAM11_HUMAN	sterile alpha motif domain containing 11	23						nucleus					0	all_cancers(77;0.00164)|all_epithelial(69;0.000959)|all_lung(157;0.00963)|Lung NSC(156;0.0232)|Ovarian(185;0.0634)	all_epithelial(116;8.75e-19)|all_lung(118;2.3e-08)|Lung NSC(185;2.38e-06)|Renal(390;0.00183)|Breast(487;0.00354)|Hepatocellular(190;0.00826)|Myeloproliferative disorder(586;0.0122)|Ovarian(437;0.0308)|Lung SC(97;0.128)		UCEC - Uterine corpus endometrioid carcinoma (11;0.00459)|Epithelial(90;1.74e-38)|OV - Ovarian serous cystadenocarcinoma(86;5.93e-23)|Colorectal(212;0.000159)|COAD - Colon adenocarcinoma(227;0.000193)|BRCA - Breast invasive adenocarcinoma(365;0.000472)|Kidney(185;0.0023)|STAD - Stomach adenocarcinoma(132;0.00644)|KIRC - Kidney renal clear cell carcinoma(229;0.0342)|Lung(427;0.199)		TATCCTCCCCGGTGGTGAGAT	0.602000													5	93					0	0	1	0	0
UBE2J2	118424	broad.mit.edu	37	1	1203298	1203298	+	Missense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr1:1203298C>G	uc001adn.2	-	2	385	c.75G>C	c.(73-75)AAG>AAC	p.K25N	UBE2J2_uc001adm.2_5'UTR|UBE2J2_uc001ado.2_Missense_Mutation_p.K25N|UBE2J2_uc001adp.2_Missense_Mutation_p.K25N|UBE2J2_uc001adq.2_5'UTR|UBE2J2_uc001adr.2_Intron|UBE2J2_uc001ads.2_5'UTR	NM_194458	NP_919440	Q8N2K1	UB2J2_HUMAN	ubiquitin conjugating enzyme E2, J2 isoform 3	25	Cytoplasmic (Potential).				response to unfolded protein	endoplasmic reticulum membrane|integral to membrane	ATP binding|ubiquitin-protein ligase activity				0	all_cancers(77;0.00164)|all_epithelial(69;0.000959)|all_lung(157;0.00963)|Lung NSC(156;0.0232)|Ovarian(185;0.0634)	all_epithelial(116;8.75e-19)|all_lung(118;2.3e-08)|Lung NSC(185;2.38e-06)|Renal(390;0.00183)|Breast(487;0.00354)|Hepatocellular(190;0.00826)|Myeloproliferative disorder(586;0.0122)|Ovarian(437;0.0308)|Lung SC(97;0.128)		Epithelial(90;6.66e-35)|OV - Ovarian serous cystadenocarcinoma(86;3.53e-21)|Colorectal(212;0.00019)|COAD - Colon adenocarcinoma(227;0.000215)|Kidney(185;0.00255)|BRCA - Breast invasive adenocarcinoma(365;0.00266)|STAD - Stomach adenocarcinoma(132;0.00645)|KIRC - Kidney renal clear cell carcinoma(229;0.0371)|Lung(427;0.205)		CCGGGTCTTTCTTAATGCGAA	0.572000													96	326					0	0	1	0	0
UBE2J2	118424	broad.mit.edu	37	1	1203343	1203343	+	Silent	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr1:1203343C>T	uc001adn.2	-	2	340	c.30G>A	c.(28-30)CCG>CCA	p.P10P	UBE2J2_uc001adm.2_5'UTR|UBE2J2_uc001ado.2_Silent_p.P10P|UBE2J2_uc001adp.2_Silent_p.P10P|UBE2J2_uc001adq.2_5'UTR|UBE2J2_uc001adr.2_Intron|UBE2J2_uc001ads.2_5'UTR	NM_194458	NP_919440	Q8N2K1	UB2J2_HUMAN	ubiquitin conjugating enzyme E2, J2 isoform 3	10	Cytoplasmic (Potential).				response to unfolded protein	endoplasmic reticulum membrane|integral to membrane	ATP binding|ubiquitin-protein ligase activity				0	all_cancers(77;0.00164)|all_epithelial(69;0.000959)|all_lung(157;0.00963)|Lung NSC(156;0.0232)|Ovarian(185;0.0634)	all_epithelial(116;8.75e-19)|all_lung(118;2.3e-08)|Lung NSC(185;2.38e-06)|Renal(390;0.00183)|Breast(487;0.00354)|Hepatocellular(190;0.00826)|Myeloproliferative disorder(586;0.0122)|Ovarian(437;0.0308)|Lung SC(97;0.128)		Epithelial(90;6.66e-35)|OV - Ovarian serous cystadenocarcinoma(86;3.53e-21)|Colorectal(212;0.00019)|COAD - Colon adenocarcinoma(227;0.000215)|Kidney(185;0.00255)|BRCA - Breast invasive adenocarcinoma(365;0.00266)|STAD - Stomach adenocarcinoma(132;0.00645)|KIRC - Kidney renal clear cell carcinoma(229;0.0371)|Lung(427;0.205)		TTGCCGTGGTCGGAGCCCTCT	0.582000													109	358					0	0	1	0	0
PANK4	55229	broad.mit.edu	37	1	2445807	2445807	+	Silent	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr1:2445807C>T	uc001ajm.1	-	11	1482	c.1473G>A	c.(1471-1473)CTG>CTA	p.L491L	PANK4_uc010nza.1_Silent_p.L452L	NM_018216	NP_060686	Q9NVE7	PANK4_HUMAN	pantothenate kinase 4	491					coenzyme A biosynthetic process	cytoplasm	ATP binding|pantothenate kinase activity			upper_aerodigestive_tract(1)|large_intestine(1)|ovary(1)	3	all_cancers(77;0.000158)|all_epithelial(69;8.01e-05)|all_lung(157;0.0212)|Lung NSC(156;0.0376)|Ovarian(185;0.0634)	all_epithelial(116;3.18e-20)|all_lung(118;1.67e-08)|Lung NSC(185;2.69e-06)|Breast(487;0.00147)|Renal(390;0.00183)|Hepatocellular(190;0.00826)|Myeloproliferative disorder(586;0.0122)|Ovarian(437;0.0308)|Lung SC(97;0.0847)|Medulloblastoma(700;0.123)		Epithelial(90;1.54e-37)|OV - Ovarian serous cystadenocarcinoma(86;6.95e-23)|GBM - Glioblastoma multiforme(42;2.81e-08)|Colorectal(212;4.25e-05)|COAD - Colon adenocarcinoma(227;0.000196)|Kidney(185;0.000342)|BRCA - Breast invasive adenocarcinoma(365;0.00445)|KIRC - Kidney renal clear cell carcinoma(229;0.00549)|STAD - Stomach adenocarcinoma(132;0.00644)|Lung(427;0.201)		GCTGCTGCCTCAGGGTCTGAA	0.607000													14	91					0	0	1	0	0
MMEL1	79258	broad.mit.edu	37	1	2524328	2524328	+	Missense_Mutation	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr1:2524328C>T	uc001ajy.2	-	20	2159	c.1945G>A	c.(1945-1947)GAG>AAG	p.E649K	MMEL1_uc009vlg.1_RNA	NM_033467	NP_258428	Q495T6	MMEL1_HUMAN	membrane metallo-endopeptidase-like 1	649	Lumenal (Potential).				proteolysis	extracellular region|integral to membrane|intracellular membrane-bounded organelle	metal ion binding|metalloendopeptidase activity				0	all_cancers(77;0.000233)|all_epithelial(69;8.55e-05)|all_lung(157;0.0228)|Lung NSC(156;0.0402)|Ovarian(185;0.0634)	all_epithelial(116;1.03e-20)|all_lung(118;5.15e-09)|Lung NSC(185;9.02e-07)|Breast(487;0.00147)|Renal(390;0.00183)|Hepatocellular(190;0.00826)|Myeloproliferative disorder(586;0.0122)|Ovarian(437;0.0308)|Lung SC(97;0.0847)|Medulloblastoma(700;0.123)		Epithelial(90;4.31e-38)|OV - Ovarian serous cystadenocarcinoma(86;8.52e-23)|GBM - Glioblastoma multiforme(42;1.49e-08)|Colorectal(212;4.79e-05)|COAD - Colon adenocarcinoma(227;0.000213)|Kidney(185;0.000371)|BRCA - Breast invasive adenocarcinoma(365;0.00219)|KIRC - Kidney renal clear cell carcinoma(229;0.00571)|STAD - Stomach adenocarcinoma(132;0.00645)|Lung(427;0.131)		ATCATGCACTCTGACTGCTCC	0.607000													29	84					0	0	1	0	0
MEGF6	1953	broad.mit.edu	37	1	3427462	3427462	+	Silent	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr1:3427462G>A	uc001akl.2	-	10	1346	c.1119C>T	c.(1117-1119)GTC>GTT	p.V373V	MEGF6_uc001akk.2_Silent_p.V268V	NM_001409	NP_001400	O75095	MEGF6_HUMAN	EGF-like-domain, multiple 3 precursor	373						extracellular region	calcium ion binding			large_intestine(1)	1	all_cancers(77;0.00681)|all_epithelial(69;0.00301)|Ovarian(185;0.0634)|Lung NSC(156;0.0969)|all_lung(157;0.105)	all_epithelial(116;7.41e-22)|all_lung(118;8.3e-09)|Lung NSC(185;3.55e-06)|Breast(487;0.000659)|Renal(390;0.00121)|Hepatocellular(190;0.00308)|Myeloproliferative disorder(586;0.0255)|Lung SC(97;0.0262)|Ovarian(437;0.0308)|Medulloblastoma(700;0.211)		Epithelial(90;3.78e-37)|OV - Ovarian serous cystadenocarcinoma(86;6.86e-22)|GBM - Glioblastoma multiforme(42;1.96e-12)|Colorectal(212;6.15e-05)|COAD - Colon adenocarcinoma(227;0.000241)|Kidney(185;0.000448)|BRCA - Breast invasive adenocarcinoma(365;0.000779)|KIRC - Kidney renal clear cell carcinoma(229;0.00645)|STAD - Stomach adenocarcinoma(132;0.00669)|Lung(427;0.213)		CACAGTCGTCGACATCTGTGG	0.657000													24	91					0	0	1	0	0
KIAA0562	9731	broad.mit.edu	37	1	3745850	3745850	+	Missense_Mutation	SNP	C	G	G	rs35089650		TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr1:3745850C>G	uc001aky.2	-	15	2490	c.2131G>C	c.(2131-2133)GAA>CAA	p.E711Q	KIAA0562_uc010nzm.1_RNA	NM_014704	NP_055519	O60308	CE104_HUMAN	glycine-, glutamate-,	711	Potential.					centriole	binding				0	all_cancers(77;0.0395)|Ovarian(185;0.0634)|all_lung(157;0.222)|Lung NSC(156;0.227)	all_epithelial(116;3.96e-21)|all_lung(118;2.74e-08)|Lung NSC(185;6.4e-06)|Breast(487;0.00066)|Renal(390;0.00121)|Hepatocellular(190;0.00335)|Myeloproliferative disorder(586;0.0255)|Ovarian(437;0.031)|Lung SC(97;0.0548)|Medulloblastoma(700;0.212)		Epithelial(90;6.85e-39)|OV - Ovarian serous cystadenocarcinoma(86;1.59e-22)|GBM - Glioblastoma multiforme(42;3.16e-16)|Colorectal(212;2.01e-05)|COAD - Colon adenocarcinoma(227;7.99e-05)|BRCA - Breast invasive adenocarcinoma(365;0.000389)|Kidney(185;0.000513)|STAD - Stomach adenocarcinoma(132;0.00709)|KIRC - Kidney renal clear cell carcinoma(229;0.00714)|Lung(427;0.137)		GCCTGAATTTCTTTCAGTGCT	0.398000													24	92					0	0	1	0	0
CHD5	26038	broad.mit.edu	37	1	6214952	6214952	+	Silent	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr1:6214952G>C	uc001amb.1	-	5	613	c.513C>G	c.(511-513)CTC>CTG	p.L171L		NM_015557	NP_056372	Q8TDI0	CHD5_HUMAN	chromodomain helicase DNA binding protein 5	171					chromatin modification|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	ATP binding|ATP-dependent helicase activity|DNA binding|zinc ion binding			central_nervous_system(3)|breast(3)|ovary(2)|upper_aerodigestive_tract(1)|lung(1)|skin(1)|pancreas(1)	12	Ovarian(185;0.0634)	all_cancers(23;5.36e-32)|all_epithelial(116;2.32e-17)|all_neural(13;3.68e-06)|all_lung(118;3.94e-06)|all_hematologic(16;2.39e-05)|Lung NSC(185;5.33e-05)|Acute lymphoblastic leukemia(12;0.000372)|Glioma(11;0.00127)|Renal(390;0.00188)|Colorectal(325;0.00342)|Breast(487;0.00373)|Hepatocellular(190;0.0218)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.15)		Epithelial(90;3.08e-37)|GBM - Glioblastoma multiforme(13;1.36e-31)|OV - Ovarian serous cystadenocarcinoma(86;7.7e-19)|Colorectal(212;9.97e-08)|COAD - Colon adenocarcinoma(227;1.07e-05)|Kidney(185;6.16e-05)|KIRC - Kidney renal clear cell carcinoma(229;0.00109)|BRCA - Breast invasive adenocarcinoma(365;0.0012)|STAD - Stomach adenocarcinoma(132;0.00346)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.193)		TCTTGGCAATGAGTGGCCTGT	0.632000													8	50					0	0	1	0	0
ESPN	83715	broad.mit.edu	37	1	6511783	6511783	+	Missense_Mutation	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr1:6511783C>T	uc001amy.2	+	9	2204	c.2036C>T	c.(2035-2037)TCA>TTA	p.S679L	ESPN_uc001amz.2_Missense_Mutation_p.S113L	NM_031475	NP_113663	B1AK53	ESPN_HUMAN	espin	679	Pro-rich.				sensory perception of sound	brush border|cytoplasm|filamentous actin|stereocilium	actin filament binding|SH3 domain binding				0	Ovarian(185;0.0386)|all_lung(157;0.154)	all_cancers(23;3.6e-37)|all_epithelial(116;2.56e-22)|all_lung(118;7.57e-07)|Lung NSC(185;4.26e-06)|all_hematologic(16;6.92e-06)|Colorectal(325;4.47e-05)|Acute lymphoblastic leukemia(12;4.92e-05)|Breast(487;7.61e-05)|Renal(390;0.0007)|Hepatocellular(190;0.00308)|Myeloproliferative disorder(586;0.0255)|Ovarian(437;0.0392)		Epithelial(90;1.82e-35)|GBM - Glioblastoma multiforme(13;3e-28)|Kidney(185;3.04e-09)|KIRC - Kidney renal clear cell carcinoma(229;5.63e-08)|Colorectal(212;7e-08)|COAD - Colon adenocarcinoma(227;1.41e-05)|BRCA - Breast invasive adenocarcinoma(365;0.000109)|STAD - Stomach adenocarcinoma(132;0.00167)|Lung(427;0.0108)|LUSC - Lung squamous cell carcinoma(448;0.0253)|READ - Rectum adenocarcinoma(331;0.0419)		ACAGTGTTCTCAGGCATCGGG	0.682000													14	20					0	0	1	0	0
THAP3	90326	broad.mit.edu	37	1	6688663	6688663	+	Missense_Mutation	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr1:6688663G>A	uc001aoc.2	+	3	338	c.179G>A	c.(178-180)CGG>CAG	p.R60Q	THAP3_uc001aod.2_Missense_Mutation_p.R60Q|THAP3_uc001aoe.1_Missense_Mutation_p.R60Q			Q8WTV1	THAP3_HUMAN	RecName: Full=THAP domain-containing protein 3;	60	THAP-type.						DNA binding|metal ion binding				0	Ovarian(185;0.0212)|all_lung(157;0.154)	all_cancers(23;7.39e-28)|all_epithelial(116;1.76e-17)|all_lung(118;2.27e-05)|Lung NSC(185;9.97e-05)|Renal(390;0.00188)|Breast(487;0.00289)|Colorectal(325;0.00342)|Hepatocellular(190;0.0218)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.156)		Colorectal(212;1.29e-07)|COAD - Colon adenocarcinoma(227;1.33e-05)|Kidney(185;4.89e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000513)|KIRC - Kidney renal clear cell carcinoma(229;0.000896)|STAD - Stomach adenocarcinoma(132;0.0167)|READ - Rectum adenocarcinoma(331;0.0642)		GAGCACTTCCGGCCAGAGTGC	0.612000													16	42					0	0	1	0	0
PER3	8863	broad.mit.edu	37	1	7895914	7895914	+	Missense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr1:7895914G>C	uc001aoo.2	+	19	3455	c.3280G>C	c.(3280-3282)GAA>CAA	p.E1094Q	PER3_uc001aop.2_Missense_Mutation_p.E1103Q|PER3_uc010nzw.1_Missense_Mutation_p.E783Q	NM_016831	NP_058515	P56645	PER3_HUMAN	period 3	1094					regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	signal transducer activity			ovary(1)|pancreas(1)|skin(1)	3	Ovarian(185;0.0634)|all_lung(157;0.178)	all_epithelial(116;9.35e-21)|all_lung(118;7.57e-07)|Lung NSC(185;4.52e-06)|Renal(390;0.000147)|Breast(487;0.00086)|Colorectal(325;0.000959)|Hepatocellular(190;0.00825)|Ovarian(437;0.0253)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0234)|all cancers(8;8.58e-70)|GBM - Glioblastoma multiforme(8;1.81e-35)|Colorectal(212;2.06e-07)|COAD - Colon adenocarcinoma(227;1.92e-05)|Kidney(185;7.18e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000472)|STAD - Stomach adenocarcinoma(132;0.00118)|KIRC - Kidney renal clear cell carcinoma(229;0.00122)|READ - Rectum adenocarcinoma(331;0.0649)		ACAGAAAAAAGAAACATTTCC	0.438000													20	58					0	0	1	0	0
RERE	473	broad.mit.edu	37	1	8419925	8419925	+	Missense_Mutation	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr1:8419925C>T	uc001ape.2	-	20	4327	c.3517G>A	c.(3517-3519)GAG>AAG	p.E1173K	RERE_uc001apf.2_Missense_Mutation_p.E1173K|RERE_uc001apd.2_Missense_Mutation_p.E619K	NM_012102	NP_036234	Q9P2R6	RERE_HUMAN	atrophin-1 like protein isoform a	1173	Potential.				multicellular organismal development|NLS-bearing substrate import into nucleus	mitochondrion	poly-glutamine tract binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)|central_nervous_system(1)	2	Ovarian(185;0.0661)	all_epithelial(116;1.17e-21)|all_lung(118;1.4e-06)|Lung NSC(185;3.06e-06)|Renal(390;0.000147)|Breast(348;0.000206)|Colorectal(325;0.00187)|Hepatocellular(190;0.00825)|Ovarian(437;0.0253)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|all cancers(8;9.64e-67)|GBM - Glioblastoma multiforme(8;9.89e-33)|Colorectal(212;1.45e-07)|COAD - Colon adenocarcinoma(227;3.42e-05)|Kidney(185;6e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000533)|KIRC - Kidney renal clear cell carcinoma(229;0.00106)|STAD - Stomach adenocarcinoma(132;0.00118)|READ - Rectum adenocarcinoma(331;0.0419)|Lung(427;0.195)		TGCTCAGCCTCGCGCTTGGCC	0.498000													28	76					0	0	1	0	0
RERE	473	broad.mit.edu	37	1	8426005	8426005	+	Nonsense_Mutation	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr1:8426005C>T	uc001ape.2	-	14	2124	c.1314G>A	c.(1312-1314)TGG>TGA	p.W438*	RERE_uc001apf.2_Nonsense_Mutation_p.W438*|RERE_uc010nzx.1_Nonsense_Mutation_p.W170*|RERE_uc001apd.2_5'UTR	NM_012102	NP_036234	Q9P2R6	RERE_HUMAN	atrophin-1 like protein isoform a	438	SANT.				multicellular organismal development|NLS-bearing substrate import into nucleus	mitochondrion	poly-glutamine tract binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)|central_nervous_system(1)	2	Ovarian(185;0.0661)	all_epithelial(116;1.17e-21)|all_lung(118;1.4e-06)|Lung NSC(185;3.06e-06)|Renal(390;0.000147)|Breast(348;0.000206)|Colorectal(325;0.00187)|Hepatocellular(190;0.00825)|Ovarian(437;0.0253)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|all cancers(8;9.64e-67)|GBM - Glioblastoma multiforme(8;9.89e-33)|Colorectal(212;1.45e-07)|COAD - Colon adenocarcinoma(227;3.42e-05)|Kidney(185;6e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000533)|KIRC - Kidney renal clear cell carcinoma(229;0.00106)|STAD - Stomach adenocarcinoma(132;0.00118)|READ - Rectum adenocarcinoma(331;0.0419)|Lung(427;0.195)		GGGTCTTCTTCCAATAGTAAT	0.622000													12	49					0	0	1	0	0
PGD	5226	broad.mit.edu	37	1	10464329	10464329	+	Missense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr1:10464329G>C	uc001arc.2	+	5	532	c.442G>C	c.(442-444)GAA>CAA	p.E148Q	PGD_uc001ard.2_Missense_Mutation_p.K66N|PGD_uc010oak.1_Missense_Mutation_p.E126Q|PGD_uc010oal.1_Missense_Mutation_p.E135Q	NM_002631	NP_002622	P52209	6PGD_HUMAN	phosphogluconate dehydrogenase	148					pentose-phosphate shunt, oxidative branch	cytosol	NADP binding|phosphogluconate dehydrogenase (decarboxylating) activity|protein binding			ovary(1)	1	Ovarian(185;0.203)	all_lung(284;1.31e-05)|Lung NSC(185;2.19e-05)|Renal(390;0.000147)|Breast(348;0.00093)|Colorectal(325;0.00205)|Hepatocellular(190;0.00913)|Ovarian(437;0.0228)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;3.14e-07)|COAD - Colon adenocarcinoma(227;7.11e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000294)|Kidney(185;0.000728)|KIRC - Kidney renal clear cell carcinoma(229;0.00258)|STAD - Stomach adenocarcinoma(132;0.00832)|READ - Rectum adenocarcinoma(331;0.0487)		AGGGAACAAAGAAGCGTGGTG	0.557000													14	60					0	0	1	0	0
TARDBP	23435	broad.mit.edu	37	1	11073843	11073843	+	Missense_Mutation	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr1:11073843C>T	uc001art.2	+	2	193	c.59C>T	c.(58-60)TCG>TTG	p.S20L	TARDBP_uc010oap.1_5'UTR	NM_007375	NP_031401	Q13148	TADBP_HUMAN	TAR DNA binding protein	20					3'-UTR-mediated mRNA stabilization|cell death|mRNA processing|negative regulation by host of viral transcription|RNA splicing|transcription from RNA polymerase II promoter	nucleus	double-stranded DNA binding|mRNA 3'-UTR binding|nucleotide binding|protein binding|sequence-specific DNA binding transcription factor activity			ovary(2)	2	Ovarian(185;0.249)	Lung NSC(185;1.04e-05)|all_lung(284;1.31e-05)|Renal(390;0.000147)|Colorectal(325;0.00205)|Breast(348;0.00262)|Hepatocellular(190;0.00913)|Ovarian(437;0.00965)|Myeloproliferative disorder(586;0.0255)	STAD - Stomach adenocarcinoma(5;0.0578)	UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;3.37e-07)|COAD - Colon adenocarcinoma(227;7.38e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000299)|Kidney(185;0.000754)|KIRC - Kidney renal clear cell carcinoma(229;0.00258)|READ - Rectum adenocarcinoma(331;0.0487)		GAAATACCATCGGAAGACGAT	0.468000													12	38					0	0	1	0	0
MTHFR	4524	broad.mit.edu	37	1	11855208	11855208	+	Silent	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr1:11855208C>T	uc001atc.1	-	6	1162	c.978G>A	c.(976-978)GAG>GAA	p.E326E	MTHFR_uc001atb.1_Silent_p.E349E	NM_005957	NP_005948	P42898	MTHR_HUMAN	5,10-methylenetetrahydrofolate reductase	326					blood circulation|folic acid metabolic process	cytosol	methylenetetrahydrofolate reductase (NADPH) activity|protein binding				0	Ovarian(185;0.249)	Lung NSC(185;8.69e-05)|all_lung(284;9.87e-05)|Renal(390;0.000147)|Breast(348;0.00093)|Colorectal(325;0.00205)|Hepatocellular(190;0.00826)|Ovarian(437;0.00965)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;5.66e-06)|COAD - Colon adenocarcinoma(227;0.000261)|BRCA - Breast invasive adenocarcinoma(304;0.000304)|Kidney(185;0.000777)|KIRC - Kidney renal clear cell carcinoma(229;0.00261)|STAD - Stomach adenocarcinoma(313;0.0073)|READ - Rectum adenocarcinoma(331;0.0649)	Benazepril(DB00542)|Cyanocobalamin(DB00115)|Folic Acid(DB00158)|L-Methionine(DB00134)|Menadione(DB00170)|Methotrexate(DB00563)|Pyridoxal Phosphate(DB00114)|Pyridoxine(DB00165)|Raltitrexed(DB00293)|Riboflavin(DB00140)|S-Adenosylmethionine(DB00118)|Tetrahydrofolic acid(DB00116)	TGGTAGCCATCTCGCGGTTGA	0.637000													16	66					0	0	1	0	0
PLOD1	5351	broad.mit.edu	37	1	12009904	12009904	+	Silent	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr1:12009904G>A	uc001atm.2	+	3	334	c.243G>A	c.(241-243)CTG>CTA	p.L81L	PLOD1_uc010obb.1_Silent_p.L128L	NM_000302	NP_000293	Q02809	PLOD1_HUMAN	lysyl hydroxylase 1 precursor	81					epidermis development|hydroxylysine biosynthetic process|protein modification process|response to hypoxia	rough endoplasmic reticulum membrane	iron ion binding|L-ascorbic acid binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|procollagen-lysine 5-dioxygenase activity|protein homodimerization activity			ovary(2)|breast(1)	3	Ovarian(185;0.249)	Lung NSC(185;8.69e-05)|all_lung(284;9.87e-05)|Renal(390;0.000147)|Breast(348;0.00093)|Colorectal(325;0.00205)|Ovarian(437;0.00965)|Hepatocellular(190;0.0202)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;6.06e-06)|COAD - Colon adenocarcinoma(227;0.000273)|BRCA - Breast invasive adenocarcinoma(304;0.000311)|Kidney(185;0.000809)|KIRC - Kidney renal clear cell carcinoma(229;0.00267)|STAD - Stomach adenocarcinoma(313;0.00743)|READ - Rectum adenocarcinoma(331;0.0649)	Minoxidil(DB00350)|Succinic acid(DB00139)|Vitamin C(DB00126)	TCCGGCTGCTGAAGAAAGCTC	0.612000													55	148					0	0	1	0	0
DHRS3	9249	broad.mit.edu	37	1	12677172	12677172	+	Missense_Mutation	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr1:12677172C>T	uc001auc.2	-	1	649	c.182G>A	c.(181-183)CGC>CAC	p.R61H	DHRS3_uc001aub.2_5'Flank|DHRS3_uc009vnm.2_Missense_Mutation_p.R61H|DHRS3_uc001aud.3_Missense_Mutation_p.R61H	NM_004753	NP_004744	O75911	DHRS3_HUMAN	dehydrogenase/reductase (SDR family) member 3	61					retinol metabolic process|visual perception	integral to membrane	electron carrier activity|NADP-retinol dehydrogenase activity|nucleotide binding			skin(1)	1	Ovarian(185;0.249)	Lung NSC(185;4.11e-05)|all_lung(284;4.58e-05)|Renal(390;0.000147)|Colorectal(325;0.000585)|Breast(348;0.000596)|Ovarian(437;0.00965)|Hepatocellular(190;0.0202)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.023)|Colorectal(212;9.25e-07)|COAD - Colon adenocarcinoma(227;0.000326)|BRCA - Breast invasive adenocarcinoma(304;0.000344)|Kidney(185;0.00235)|KIRC - Kidney renal clear cell carcinoma(229;0.00656)|STAD - Stomach adenocarcinoma(313;0.00798)|READ - Rectum adenocarcinoma(331;0.0419)	Vitamin A(DB00162)	TCTGGCGCCGCGCTCCGCGAA	0.746000													10	36					0	0	1	0	0
TMEM51	55092	broad.mit.edu	37	1	15546027	15546027	+	Missense_Mutation	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr1:15546027G>A	uc001avw.3	+	4	1069	c.550G>A	c.(550-552)GGG>AGG	p.G184R	TMEM51_uc010obk.1_Missense_Mutation_p.G184R|TMEM51_uc001avz.2_3'UTR|TMEM51_uc001avy.2_Missense_Mutation_p.G184R|TMEM51_uc001avx.2_Missense_Mutation_p.G184R	NM_001136216	NP_001129688	Q9NW97	TMM51_HUMAN	transmembrane protein 51	184						integral to membrane					0		Renal(390;0.00145)|Breast(348;0.00186)|Colorectal(325;0.00215)|all_lung(284;0.00459)|Lung NSC(340;0.0104)|Myeloproliferative disorder(586;0.0393)|Hepatocellular(190;0.0623)|Ovarian(437;0.0798)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0265)|Colorectal(212;2.07e-06)|COAD - Colon adenocarcinoma(227;7.14e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000175)|KIRC - Kidney renal clear cell carcinoma(229;0.00141)|STAD - Stomach adenocarcinoma(313;0.00644)|READ - Rectum adenocarcinoma(331;0.0751)		GGCCAGCCCTGGGAACCCCCC	0.552000													22	97					0	0	1	0	0
SPEN	23013	broad.mit.edu	37	1	16257906	16257906	+	Nonsense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr1:16257906C>G	uc001axk.1	+	11	5375	c.5171C>G	c.(5170-5172)TCA>TGA	p.S1724*	SPEN_uc010obp.1_Nonsense_Mutation_p.S1683*	NM_015001	NP_055816	Q96T58	MINT_HUMAN	spen homolog, transcriptional regulator	1724					interspecies interaction between organisms|negative regulation of transcription, DNA-dependent|Notch signaling pathway	nucleus	nucleotide binding|protein binding|RNA binding			ovary(6)|breast(3)|lung(2)|skin(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)	15		Colorectal(325;0.000258)|Breast(348;0.000278)|Lung NSC(340;0.000419)|Renal(390;0.000518)|all_lung(284;0.000567)|Ovarian(437;0.0129)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0185)|Colorectal(212;5.96e-07)|COAD - Colon adenocarcinoma(227;3.11e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000115)|Kidney(64;0.000212)|KIRC - Kidney renal clear cell carcinoma(64;0.003)|STAD - Stomach adenocarcinoma(313;0.013)|READ - Rectum adenocarcinoma(331;0.0681)		GAAGGTTCATCAGGTGACCAG	0.592000													85	265					0	0	1	0	0
SPEN	23013	broad.mit.edu	37	1	16259072	16259072	+	Missense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr1:16259072G>C	uc001axk.1	+	11	6541	c.6337G>C	c.(6337-6339)GAA>CAA	p.E2113Q	SPEN_uc010obp.1_Missense_Mutation_p.E2072Q	NM_015001	NP_055816	Q96T58	MINT_HUMAN	spen homolog, transcriptional regulator	2113					interspecies interaction between organisms|negative regulation of transcription, DNA-dependent|Notch signaling pathway	nucleus	nucleotide binding|protein binding|RNA binding			ovary(6)|breast(3)|lung(2)|skin(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)	15		Colorectal(325;0.000258)|Breast(348;0.000278)|Lung NSC(340;0.000419)|Renal(390;0.000518)|all_lung(284;0.000567)|Ovarian(437;0.0129)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0185)|Colorectal(212;5.96e-07)|COAD - Colon adenocarcinoma(227;3.11e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000115)|Kidney(64;0.000212)|KIRC - Kidney renal clear cell carcinoma(64;0.003)|STAD - Stomach adenocarcinoma(313;0.013)|READ - Rectum adenocarcinoma(331;0.0681)		AGGGGAGAGGGAATCTGGGGT	0.517000													42	161					0	0	1	0	0
SPEN	23013	broad.mit.edu	37	1	16261839	16261839	+	Nonsense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr1:16261839C>G	uc001axk.1	+	11	9308	c.9104C>G	c.(9103-9105)TCA>TGA	p.S3035*	SPEN_uc010obp.1_Nonsense_Mutation_p.S2994*	NM_015001	NP_055816	Q96T58	MINT_HUMAN	spen homolog, transcriptional regulator	3035					interspecies interaction between organisms|negative regulation of transcription, DNA-dependent|Notch signaling pathway	nucleus	nucleotide binding|protein binding|RNA binding			ovary(6)|breast(3)|lung(2)|skin(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)	15		Colorectal(325;0.000258)|Breast(348;0.000278)|Lung NSC(340;0.000419)|Renal(390;0.000518)|all_lung(284;0.000567)|Ovarian(437;0.0129)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0185)|Colorectal(212;5.96e-07)|COAD - Colon adenocarcinoma(227;3.11e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000115)|Kidney(64;0.000212)|KIRC - Kidney renal clear cell carcinoma(64;0.003)|STAD - Stomach adenocarcinoma(313;0.013)|READ - Rectum adenocarcinoma(331;0.0681)		GGGCCATCCTCATTCCCAAGG	0.607000													23	125					0	0	1	0	0
SPEN	23013	broad.mit.edu	37	1	16262059	16262059	+	Missense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr1:16262059C>G	uc001axk.1	+	11	9528	c.9324C>G	c.(9322-9324)ATC>ATG	p.I3108M	SPEN_uc010obp.1_Missense_Mutation_p.I3067M	NM_015001	NP_055816	Q96T58	MINT_HUMAN	spen homolog, transcriptional regulator	3108					interspecies interaction between organisms|negative regulation of transcription, DNA-dependent|Notch signaling pathway	nucleus	nucleotide binding|protein binding|RNA binding			ovary(6)|breast(3)|lung(2)|skin(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)	15		Colorectal(325;0.000258)|Breast(348;0.000278)|Lung NSC(340;0.000419)|Renal(390;0.000518)|all_lung(284;0.000567)|Ovarian(437;0.0129)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0185)|Colorectal(212;5.96e-07)|COAD - Colon adenocarcinoma(227;3.11e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000115)|Kidney(64;0.000212)|KIRC - Kidney renal clear cell carcinoma(64;0.003)|STAD - Stomach adenocarcinoma(313;0.013)|READ - Rectum adenocarcinoma(331;0.0681)		TGCCCAGTATCACCTACAGCA	0.632000													22	67					0	0	1	0	0
EPHA2	1969	broad.mit.edu	37	1	16475043	16475043	+	Missense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr1:16475043G>C	uc001aya.1	-	3	790	c.653C>G	c.(652-654)TCT>TGT	p.S218C	EPHA2_uc010oca.1_Missense_Mutation_p.S218C	NM_004431	NP_004422	P29317	EPHA2_HUMAN	ephrin receptor EphA2 precursor	218	Extracellular (Potential).|Cys-rich.				activation of Rac GTPase activity|angiogenesis|apoptosis|cell chemotaxis|negative regulation of protein kinase B signaling cascade|positive regulation of establishment of protein localization in plasma membrane|protein kinase B signaling cascade|regulation of blood vessel endothelial cell migration|regulation of cell adhesion mediated by integrin|regulation of lamellipodium assembly|response to growth factor stimulus	focal adhesion|integral to plasma membrane|lamellipodium membrane|ruffle membrane	ATP binding|ephrin receptor activity|protein binding			lung(3)|central_nervous_system(3)|stomach(2)|ovary(2)	10		Colorectal(325;3.46e-05)|Breast(348;0.000278)|Lung NSC(340;0.000419)|Renal(390;0.000518)|all_lung(284;0.000567)|Ovarian(437;0.0221)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0181)|Colorectal(212;3.63e-07)|COAD - Colon adenocarcinoma(227;2.25e-05)|BRCA - Breast invasive adenocarcinoma(304;9.58e-05)|Kidney(64;0.000175)|KIRC - Kidney renal clear cell carcinoma(64;0.00261)|STAD - Stomach adenocarcinoma(313;0.00669)|READ - Rectum adenocarcinoma(331;0.0649)	Dasatinib(DB01254)	AGGTGCATCAGAGCCGGCGAT	0.657000													20	103					0	0	1	0	0
FBXO42	54455	broad.mit.edu	37	1	16577299	16577299	+	Missense_Mutation	SNP	G	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr1:16577299G>T	uc001ayg.2	-	10	2236	c.2020C>A	c.(2020-2022)CCT>ACT	p.P674T	FBXO42_uc001aye.3_Missense_Mutation_p.P392T|FBXO42_uc001ayf.2_Missense_Mutation_p.P581T	NM_018994	NP_061867	Q6P3S6	FBX42_HUMAN	F-box protein 42	674										upper_aerodigestive_tract(1)|skin(1)	2		Colorectal(325;0.000147)|Renal(390;0.00145)|Breast(348;0.00224)|Lung NSC(340;0.00475)|all_lung(284;0.00671)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.0646)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0193)|Colorectal(212;3.16e-07)|COAD - Colon adenocarcinoma(227;1.46e-05)|BRCA - Breast invasive adenocarcinoma(304;4.37e-05)|Kidney(64;0.000246)|KIRC - Kidney renal clear cell carcinoma(64;0.00336)|STAD - Stomach adenocarcinoma(313;0.0139)|READ - Rectum adenocarcinoma(331;0.0693)		CTGGTTTCAGGAGGTCCAACC	0.468000													90	228					4.64247e-43	4.8733e-43	1	1	0
NBPF1	55672	broad.mit.edu	37	1	16907343	16907343	+	Silent	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr1:16907343C>T	uc009vos.1	-	16	2376	c.1488G>A	c.(1486-1488)AAG>AAA	p.K496K	NBPF1_uc009vot.1_Intron|NBPF1_uc001ayz.1_Intron|NBPF1_uc010oce.1_Silent_p.K225K	NM_017940	NP_060410	Q3BBV0	NBPF1_HUMAN	hypothetical protein LOC55672	496	NBPF 2.					cytoplasm					0				UCEC - Uterine corpus endometrioid carcinoma (279;0.00459)|BRCA - Breast invasive adenocarcinoma(304;7.52e-06)|COAD - Colon adenocarcinoma(227;1.05e-05)|Kidney(64;0.00016)|KIRC - Kidney renal clear cell carcinoma(64;0.00258)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.179)		TGTTGATGTTCTTGTGAGGCT	0.468000													32	660					0	0	1	0	0
MST1P2	11209	broad.mit.edu	37	1	16976720	16976720	+	RNA	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr1:16976720G>C	uc010och.1	+	14		c.2441G>C			MST1P2_uc001azl.3_RNA|MST1P2_uc009vox.2_RNA|MST1P2_uc001azm.3_RNA	NR_027504				Homo sapiens cDNA FLJ43241 fis, clone HEART1000010, weakly  similar to Hepatocyte growth factor-like protein precursor.												0						AAGGTCATGAGACTGGGTTAG	0.443000													3	84					0	0	1	0	0
CROCC	9696	broad.mit.edu	37	1	17279857	17279857	+	Missense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr1:17279857G>C	uc001azt.2	+	21	3136	c.3067G>C	c.(3067-3069)GAG>CAG	p.E1023Q	CROCC_uc009voz.1_Missense_Mutation_p.E622Q|CROCC_uc001azu.2_Missense_Mutation_p.E326Q	NM_014675	NP_055490	Q5TZA2	CROCC_HUMAN	ciliary rootlet coiled-coil	1023	Potential.				cell cycle|cell projection organization|centrosome organization|protein localization	actin cytoskeleton|centriole|ciliary rootlet|plasma membrane	kinesin binding|structural molecule activity			ovary(2)|breast(2)|central_nervous_system(1)	5		Colorectal(325;3.46e-05)|Breast(348;0.000162)|Lung NSC(340;0.000174)|all_lung(284;0.000234)|Renal(390;0.000518)|Ovarian(437;0.00669)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00459)|BRCA - Breast invasive adenocarcinoma(304;7.63e-06)|COAD - Colon adenocarcinoma(227;1.07e-05)|Kidney(64;0.000163)|KIRC - Kidney renal clear cell carcinoma(64;0.00258)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.181)		GCTGCAGCGTGAGCAGGAGGA	0.682000													2	6					0	0	1	0	0
SDHB	6390	broad.mit.edu	37	1	17345426	17345426	+	Missense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr1:17345426C>G	uc001bae.2	-	8	944	c.793G>C	c.(793-795)GAG>CAG	p.E265Q		NM_003000	NP_002991	P21912	DHSB_HUMAN	succinate dehydrogenase complex, subunit B, iron	265					respiratory electron transport chain|transport|tricarboxylic acid cycle	mitochondrial respiratory chain complex II	2 iron, 2 sulfur cluster binding|3 iron, 4 sulfur cluster binding|4 iron, 4 sulfur cluster binding|electron carrier activity|metal ion binding|protein binding|succinate dehydrogenase (ubiquinone) activity|ubiquinone binding			breast(1)	1		Colorectal(325;3.46e-05)|Breast(348;0.000162)|Lung NSC(340;0.000419)|Renal(390;0.000518)|all_lung(284;0.00054)|Ovarian(437;0.00669)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0049)|COAD - Colon adenocarcinoma(227;1.18e-05)|BRCA - Breast invasive adenocarcinoma(304;2.41e-05)|Kidney(64;0.000188)|KIRC - Kidney renal clear cell carcinoma(64;0.00273)|STAD - Stomach adenocarcinoma(196;0.00656)|READ - Rectum adenocarcinoma(331;0.0656)|Lung(427;0.19)	Succinic acid(DB00139)	TTCTTGATCTCTGCAATAGCT	0.363000			Mis|N|F			paraganglioma|pheochromocytoma			Familial_Paragangliomas|Carney-Stratakis_syndrome|Cowden_syndrome				8	249					0	0	1	0	0
ALDH4A1	8659	broad.mit.edu	37	1	19203721	19203721	+	Missense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr1:19203721G>C	uc001bbb.2	-	11	1442	c.1166C>G	c.(1165-1167)TCT>TGT	p.S389C	ALDH4A1_uc010ocu.1_Missense_Mutation_p.S329C|ALDH4A1_uc001bbc.2_Missense_Mutation_p.S389C	NM_170726	NP_733844	P30038	AL4A1_HUMAN	aldehyde dehydrogenase 4A1 isoform a precursor	389					proline biosynthetic process|proline catabolic process	mitochondrial matrix	1-pyrroline-5-carboxylate dehydrogenase activity|aldehyde dehydrogenase (NAD) activity|electron carrier activity				0		Colorectal(325;3.46e-05)|all_lung(284;0.000321)|Lung NSC(340;0.000398)|Renal(390;0.000518)|Breast(348;0.000812)|Ovarian(437;0.00764)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00479)|BRCA - Breast invasive adenocarcinoma(304;3.67e-05)|Kidney(64;0.000182)|KIRC - Kidney renal clear cell carcinoma(64;0.00269)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)	NADH(DB00157)	AATCACTGCAGAGAAGAAGGT	0.617000													10	14					0	0	1	0	0
UBR4	23352	broad.mit.edu	37	1	19490262	19490262	+	Missense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr1:19490262C>G	uc001bbi.2	-	34	4764	c.4760G>C	c.(4759-4761)GGA>GCA	p.G1587A	UBR4_uc001bbm.1_Missense_Mutation_p.G798A	NM_020765	NP_065816	Q5T4S7	UBR4_HUMAN	retinoblastoma-associated factor 600	1587					interspecies interaction between organisms	cytoplasm|cytoskeleton|integral to membrane|nucleus	calmodulin binding|ubiquitin-protein ligase activity|zinc ion binding			kidney(10)|ovary(7)|breast(4)|pancreas(2)|skin(2)	25		Colorectal(325;3.46e-05)|Renal(390;0.000147)|all_lung(284;0.000328)|Lung NSC(340;0.000406)|Breast(348;0.000814)|Ovarian(437;0.00774)|Myeloproliferative disorder(586;0.0256)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00674)|BRCA - Breast invasive adenocarcinoma(304;5.43e-05)|Kidney(64;0.000337)|KIRC - Kidney renal clear cell carcinoma(64;0.00426)|STAD - Stomach adenocarcinoma(196;0.00715)|READ - Rectum adenocarcinoma(331;0.0816)		TCTTACCTTTCCATGCATTAC	0.428000													22	227					0	0	1	0	0
AKR7L	246181	broad.mit.edu	37	1	19597310	19597310	+	Missense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr1:19597310G>C	uc010ocx.1	-	3	334	c.334C>G	c.(334-336)CTA>GTA	p.L112V	AKR7L_uc010ocy.1_Missense_Mutation_p.L112V	NM_201252	NP_957704			aflatoxin B1 aldehyde reductase 3 isoform 1												0						GGTGCATGTAGATAGAAGAGG	0.612000													11	56					0	0	1	0	0
Unknown	0	broad.mit.edu	37	1	21751240	21751240	+	RNA	SNP	C	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr1:21751240C>A	uc001bep.1	-	5		c.418G>T								Homo sapiens cDNA FLJ25572 fis, clone JTH05111.																		AAAGGCACTTCTGTACTGCTG	0.453000													7	304					0.0293803	0.0294944	1	1	0
HSPG2	3339	broad.mit.edu	37	1	22159062	22159062	+	Silent	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr1:22159062C>T	uc001bfj.2	-	81	11173	c.11133G>A	c.(11131-11133)GGG>GGA	p.G3711G	HSPG2_uc001bfi.2_5'Flank|HSPG2_uc009vqd.2_Silent_p.G3712G	NM_005529	NP_005520	P98160	PGBM_HUMAN	heparan sulfate proteoglycan 2 precursor	3711	Laminin G-like 1.				angiogenesis|cell adhesion|lipid metabolic process|lipoprotein metabolic process	basement membrane|extracellular space|plasma membrane	protein C-terminus binding			ovary(5)|large_intestine(2)|central_nervous_system(1)|skin(1)	9		Colorectal(325;3.46e-05)|all_lung(284;7.93e-05)|Lung NSC(340;8.71e-05)|Renal(390;0.000219)|Breast(348;0.00222)|Ovarian(437;0.00308)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0498)|OV - Ovarian serous cystadenocarcinoma(117;1.14e-26)|Colorectal(126;4.18e-07)|COAD - Colon adenocarcinoma(152;1.82e-05)|GBM - Glioblastoma multiforme(114;3.13e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000756)|STAD - Stomach adenocarcinoma(196;0.00656)|KIRC - Kidney renal clear cell carcinoma(1967;0.00942)|READ - Rectum adenocarcinoma(331;0.0721)|Lung(427;0.223)	Becaplermin(DB00102)|Palifermin(DB00039)	TGGTGGGGCTCCCTGGGACTC	0.677000													28	95					0	0	1	0	0
MDS2	259283	broad.mit.edu	37	1	23953590	23953590	+	RNA	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr1:23953590C>G	uc001bhi.3	+	3		c.880C>G			MDS2_uc001bhj.3_RNA					Homo sapiens MDS2 gene.											ovary(2)	2						GAGTCACACTCCAattccact	0.209000			T	ETV6	MDS								12	22					0	0	1	0	0
RCAN3	11123	broad.mit.edu	37	1	24861651	24861651	+	Missense_Mutation	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr1:24861651G>A	uc001bjj.2	+	5	923	c.610G>A	c.(610-612)GAA>AAA	p.E204K	RCAN3_uc009vrd.2_Missense_Mutation_p.E194K|RCAN3_uc009vre.2_Missense_Mutation_p.E146K|RCAN3_uc009vrf.2_Silent_p.V146V|RCAN3_uc009vrg.2_Silent_p.V88V	NM_013441	NP_038469	Q9UKA8	RCAN3_HUMAN	Down syndrome critical region gene 1-like 2	204					anatomical structure morphogenesis|calcium-mediated signaling		nucleotide binding|RNA binding|troponin I binding				0		Colorectal(325;3.46e-05)|Renal(390;0.0007)|Lung NSC(340;0.000946)|all_lung(284;0.00125)|Ovarian(437;0.00473)|Breast(348;0.0148)|Myeloproliferative disorder(586;0.0255)|all_neural(195;0.19)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0427)|OV - Ovarian serous cystadenocarcinoma(117;1.13e-24)|Colorectal(126;6.09e-08)|COAD - Colon adenocarcinoma(152;3.33e-06)|GBM - Glioblastoma multiforme(114;0.000923)|BRCA - Breast invasive adenocarcinoma(304;0.0018)|KIRC - Kidney renal clear cell carcinoma(1967;0.00359)|STAD - Stomach adenocarcinoma(196;0.00493)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.14)		CTGTGAAAGTGAAACTGAAGA	0.502000													19	50					0	0	1	0	0
CCDC21	64793	broad.mit.edu	37	1	26603650	26603650	+	Missense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr1:26603650G>C	uc001bls.1	+	14	2286	c.2155G>C	c.(2155-2157)GAT>CAT	p.D719H	SH3BGRL3_uc001blu.2_5'Flank|CCDC21_uc001blr.2_Missense_Mutation_p.D718H|CCDC21_uc010ofa.1_Missense_Mutation_p.D668H|CCDC21_uc001blt.1_Missense_Mutation_p.D151H	NM_022778	NP_073615	Q6P2H3	CEP85_HUMAN	coiled-coil domain containing 21	719						centrosome|nucleolus|spindle pole					0		all_cancers(24;7e-19)|Colorectal(325;0.000147)|all_lung(284;0.00122)|Lung NSC(340;0.00128)|Renal(390;0.00211)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.051)|Breast(348;0.0589)|all_neural(195;0.0966)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0178)|OV - Ovarian serous cystadenocarcinoma(117;2.6e-26)|Colorectal(126;1.65e-08)|COAD - Colon adenocarcinoma(152;9.48e-07)|KIRC - Kidney renal clear cell carcinoma(1967;0.000794)|BRCA - Breast invasive adenocarcinoma(304;0.00105)|STAD - Stomach adenocarcinoma(196;0.00155)|GBM - Glioblastoma multiforme(114;0.00917)|READ - Rectum adenocarcinoma(331;0.0649)		GACTCAGCTAGATTTGCAGAA	0.468000													76	228					0	0	1	0	0
LIN28A	79727	broad.mit.edu	37	1	26752837	26752837	+	Nonsense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr1:26752837C>G	uc001bmj.2	+	4	632	c.518C>G	c.(517-519)TCA>TGA	p.S173*	LIN28A_uc001bmi.1_RNA	NM_024674	NP_078950	Q9H9Z2	LN28A_HUMAN	lin-28 homolog	173	CCHC-type 2.				miRNA catabolic process|pre-miRNA processing|regulation of transcription, DNA-dependent|RNA 3'-end processing|stem cell maintenance	cytoplasmic mRNA processing body|nucleolus|stress granule	DNA binding|zinc ion binding			central_nervous_system(1)	1						ATGGTAGCCTCATGTCCGCTG	0.557000													16	76					0	0	1	0	0
RPS6KA1	6195	broad.mit.edu	37	1	26898394	26898394	+	Missense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr1:26898394C>G	uc001bmr.1	+	19	1970	c.1807C>G	c.(1807-1809)CTG>GTG	p.L603V	RPS6KA1_uc010ofe.1_Missense_Mutation_p.L511V|RPS6KA1_uc010off.1_Missense_Mutation_p.L587V|RPS6KA1_uc001bms.1_Missense_Mutation_p.L612V|RPS6KA1_uc009vsl.1_Missense_Mutation_p.L446V	NM_002953	NP_002944	Q15418	KS6A1_HUMAN	ribosomal protein S6 kinase, 90kDa, polypeptide	603	Protein kinase 2.				axon guidance|innate immune response|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|nerve growth factor receptor signaling pathway|stress-activated MAPK cascade|synaptic transmission|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	cytosol|nucleoplasm	ATP binding|caspase inhibitor activity|magnesium ion binding|protein binding|protein serine/threonine kinase activity			lung(1)	1		all_cancers(24;2.49e-24)|Colorectal(325;3.46e-05)|all_lung(284;4.76e-05)|Lung NSC(340;5.83e-05)|Renal(390;0.0007)|Ovarian(437;0.00473)|Breast(348;0.00571)|Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0381)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0178)|Epithelial(14;1.12e-50)|OV - Ovarian serous cystadenocarcinoma(117;2.89e-29)|Colorectal(126;1.4e-08)|COAD - Colon adenocarcinoma(152;9.31e-07)|BRCA - Breast invasive adenocarcinoma(304;0.000537)|KIRC - Kidney renal clear cell carcinoma(1967;0.000759)|STAD - Stomach adenocarcinoma(196;0.00151)|GBM - Glioblastoma multiforme(114;0.0361)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.161)|LUSC - Lung squamous cell carcinoma(448;0.234)		CCTGGGCATTCTGCTGTACAC	0.622000													3	58					0	0	1	0	0
ARID1A	8289	broad.mit.edu	37	1	27092809	27092809	+	Nonsense_Mutation	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr1:27092809C>T	uc001bmv.1	+	9	3203	c.2830C>T	c.(2830-2832)CAG>TAG	p.Q944*	ARID1A_uc001bmt.1_Nonsense_Mutation_p.Q944*|ARID1A_uc001bmu.1_Nonsense_Mutation_p.Q944*|ARID1A_uc001bmw.1_Nonsense_Mutation_p.Q561*	NM_006015	NP_006006	O14497	ARI1A_HUMAN	AT rich interactive domain 1A isoform a	944					androgen receptor signaling pathway|chromatin-mediated maintenance of transcription|estrogen receptor signaling pathway|glucocorticoid receptor signaling pathway|nervous system development|nucleosome mobilization|transcription, DNA-dependent	nBAF complex|npBAF complex|SWI/SNF complex	DNA binding|protein binding			ovary(124)|pancreas(5)|central_nervous_system(3)|endometrium(3)|kidney(3)|skin(2)|upper_aerodigestive_tract(1)|lung(1)	142		all_cancers(24;6.36e-27)|all_epithelial(13;5.93e-24)|Colorectal(325;3.46e-05)|all_lung(284;4.76e-05)|Lung NSC(340;5.83e-05)|Breast(348;9.7e-05)|Renal(390;0.0007)|Ovarian(437;0.00473)|Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0381)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0178)|all cancers(4;2.61e-56)|Epithelial(14;7.53e-55)|OV - Ovarian serous cystadenocarcinoma(117;4.5e-30)|Colorectal(126;2.07e-09)|COAD - Colon adenocarcinoma(152;4.29e-07)|BRCA - Breast invasive adenocarcinoma(304;4.13e-05)|STAD - Stomach adenocarcinoma(196;0.000279)|KIRC - Kidney renal clear cell carcinoma(1967;0.000794)|GBM - Glioblastoma multiforme(114;0.0132)|READ - Rectum adenocarcinoma(331;0.0469)|Lung(427;0.167)|LUSC - Lung squamous cell carcinoma(448;0.242)		GATCAACCCTCAGGGACCCCC	0.498000			Mis|N|F|S|D		clear cell ovarian carcinoma|RCC								4	111					0	0	1	0	0
ARID1A	8289	broad.mit.edu	37	1	27105565	27105565	+	Missense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr1:27105565G>C	uc001bmv.1	+	20	5549	c.5176G>C	c.(5176-5178)GAG>CAG	p.E1726Q	ARID1A_uc001bmu.1_Missense_Mutation_p.E1509Q|ARID1A_uc001bmx.1_Missense_Mutation_p.E572Q|ARID1A_uc009vsm.1_Missense_Mutation_p.E54Q|ARID1A_uc009vsn.1_5'UTR	NM_006015	NP_006006	O14497	ARI1A_HUMAN	AT rich interactive domain 1A isoform a	1726					androgen receptor signaling pathway|chromatin-mediated maintenance of transcription|estrogen receptor signaling pathway|glucocorticoid receptor signaling pathway|nervous system development|nucleosome mobilization|transcription, DNA-dependent	nBAF complex|npBAF complex|SWI/SNF complex	DNA binding|protein binding			ovary(124)|pancreas(5)|central_nervous_system(3)|endometrium(3)|kidney(3)|skin(2)|upper_aerodigestive_tract(1)|lung(1)	142		all_cancers(24;6.36e-27)|all_epithelial(13;5.93e-24)|Colorectal(325;3.46e-05)|all_lung(284;4.76e-05)|Lung NSC(340;5.83e-05)|Breast(348;9.7e-05)|Renal(390;0.0007)|Ovarian(437;0.00473)|Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0381)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0178)|all cancers(4;2.61e-56)|Epithelial(14;7.53e-55)|OV - Ovarian serous cystadenocarcinoma(117;4.5e-30)|Colorectal(126;2.07e-09)|COAD - Colon adenocarcinoma(152;4.29e-07)|BRCA - Breast invasive adenocarcinoma(304;4.13e-05)|STAD - Stomach adenocarcinoma(196;0.000279)|KIRC - Kidney renal clear cell carcinoma(1967;0.000794)|GBM - Glioblastoma multiforme(114;0.0132)|READ - Rectum adenocarcinoma(331;0.0469)|Lung(427;0.167)|LUSC - Lung squamous cell carcinoma(448;0.242)		ATGCCTGATTGAGATCTTTGG	0.463000			Mis|N|F|S|D		clear cell ovarian carcinoma|RCC								6	377					0	0	1	0	0
SFN	2810	broad.mit.edu	37	1	27190265	27190265	+	Missense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr1:27190265G>C	uc001bnc.1	+	1	633	c.562G>C	c.(562-564)GAG>CAG	p.E188Q	uc010ofi.1_RNA	NM_006142	NP_006133	P31947	1433S_HUMAN	stratifin	188					DNA damage response, signal transduction resulting in induction of apoptosis|negative regulation of caspase activity|release of cytochrome c from mitochondria	cytoplasm|extracellular space|nucleus	protein domain specific binding|protein kinase C inhibitor activity				0		all_cancers(24;1.23e-26)|all_epithelial(13;1.19e-23)|Colorectal(325;3.46e-05)|all_lung(284;5.94e-05)|Lung NSC(340;7.26e-05)|Breast(348;0.00017)|Renal(390;0.0007)|Ovarian(437;0.00764)|Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0381)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0178)|all cancers(4;2.1e-52)|Epithelial(14;2.31e-52)|OV - Ovarian serous cystadenocarcinoma(117;8.22e-30)|Colorectal(126;1.31e-09)|COAD - Colon adenocarcinoma(152;3.45e-07)|BRCA - Breast invasive adenocarcinoma(304;0.000501)|STAD - Stomach adenocarcinoma(196;0.000588)|KIRC - Kidney renal clear cell carcinoma(1967;0.000716)|READ - Rectum adenocarcinoma(331;0.0419)|GBM - Glioblastoma multiforme(114;0.0767)|Lung(427;0.215)		CAACAGCCCCGAGGAGGCCAT	0.592000													3	156					0	0	1	0	0
SLC9A1	6548	broad.mit.edu	37	1	27428977	27428977	+	Silent	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr1:27428977G>C	uc001bnm.2	-	8	2345	c.1719C>G	c.(1717-1719)CTC>CTG	p.L573L	SLC9A1_uc001bnl.2_Silent_p.L77L|SLC9A1_uc010ofk.1_Silent_p.L234L	NM_003047	NP_003038	P19634	SL9A1_HUMAN	solute carrier family 9, isoform A1	573	Cytoplasmic (Potential).				regulation of pH	integral to membrane	sodium:hydrogen antiporter activity			ovary(1)|central_nervous_system(1)	2				UCEC - Uterine corpus endometrioid carcinoma (279;0.0178)|Epithelial(14;2.19e-50)|OV - Ovarian serous cystadenocarcinoma(117;1.8e-29)|Colorectal(126;7.61e-09)|COAD - Colon adenocarcinoma(152;9.32e-07)|BRCA - Breast invasive adenocarcinoma(304;0.000521)|KIRC - Kidney renal clear cell carcinoma(1967;0.00079)|STAD - Stomach adenocarcinoma(196;0.00125)|READ - Rectum adenocarcinoma(331;0.046)	Amiloride(DB00594)	AGAAGGCAATGAGCTGGGGCT	0.577000													4	304					0	0	1	0	0
SLC9A1	6548	broad.mit.edu	37	1	27440753	27440753	+	Nonsense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr1:27440753G>C	uc001bnm.2	-	2	1003	c.377C>G	c.(376-378)TCA>TGA	p.S126*	SLC9A1_uc010ofk.1_Intron|SLC9A1_uc001bnn.2_Nonsense_Mutation_p.S126*	NM_003047	NP_003038	P19634	SL9A1_HUMAN	solute carrier family 9, isoform A1	126	Helical; Name=M2; (Potential).				regulation of pH	integral to membrane	sodium:hydrogen antiporter activity			ovary(1)|central_nervous_system(1)	2				UCEC - Uterine corpus endometrioid carcinoma (279;0.0178)|Epithelial(14;2.19e-50)|OV - Ovarian serous cystadenocarcinoma(117;1.8e-29)|Colorectal(126;7.61e-09)|COAD - Colon adenocarcinoma(152;9.32e-07)|BRCA - Breast invasive adenocarcinoma(304;0.000521)|KIRC - Kidney renal clear cell carcinoma(1967;0.00079)|STAD - Stomach adenocarcinoma(196;0.00125)|READ - Rectum adenocarcinoma(331;0.046)	Amiloride(DB00594)	GACGATGCTTGAGATAGTGGG	0.637000													21	62					0	0	1	0	0
WASF2	10163	broad.mit.edu	37	1	27744783	27744783	+	Missense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr1:27744783G>C	uc001bof.1	-	4	622	c.406C>G	c.(406-408)CTT>GTT	p.L136V	WASF2_uc010ofl.1_Missense_Mutation_p.L136V	NM_006990	NP_008921	Q9Y6W5	WASF2_HUMAN	WAS protein family, member 2	136					actin cytoskeleton organization|G-protein signaling, coupled to cAMP nucleotide second messenger	actin cytoskeleton|lamellipodium	actin binding			skin(2)|ovary(1)	3		all_lung(284;1.06e-05)|Lung NSC(340;1.86e-05)|Colorectal(325;3.46e-05)|Renal(390;0.0007)|Breast(348;0.0021)|Ovarian(437;0.00503)|Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0381)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0446)|OV - Ovarian serous cystadenocarcinoma(117;2.46e-25)|Colorectal(126;1.7e-08)|COAD - Colon adenocarcinoma(152;2e-06)|BRCA - Breast invasive adenocarcinoma(304;0.00139)|KIRC - Kidney renal clear cell carcinoma(1967;0.00204)|STAD - Stomach adenocarcinoma(196;0.00325)|READ - Rectum adenocarcinoma(331;0.0481)		TAAGGGGTAAGATTGTTGAGA	0.423000													4	71					0	0	1	0	0
PPP1R8	5511	broad.mit.edu	37	1	28169737	28169737	+	Missense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr1:28169737C>G	uc001bov.1	+	5	587	c.533C>G	c.(532-534)TCT>TGT	p.S178C	PPP1R8_uc001bow.1_Missense_Mutation_p.S36C|PPP1R8_uc001box.1_5'UTR|PPP1R8_uc009vtc.1_RNA|PPP1R8_uc009vtd.1_RNA	NM_014110	NP_054829	Q12972	PP1R8_HUMAN	protein phosphatase 1 regulatory inhibitor	178	Interaction with EED.				mRNA processing|regulation of transcription, DNA-dependent|RNA catabolic process|RNA splicing|transcription, DNA-dependent	cytoplasm|nuclear speck|spliceosomal complex	DNA binding|endonuclease activity|protein binding|protein serine/threonine phosphatase inhibitor activity|ribonuclease E activity|RNA binding				0		Colorectal(325;3.46e-05)|all_lung(284;0.000129)|Lung NSC(340;0.000259)|Renal(390;0.00121)|Breast(348;0.00345)|Ovarian(437;0.00503)|all_neural(195;0.0208)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0419)|OV - Ovarian serous cystadenocarcinoma(117;2.76e-24)|Colorectal(126;2.96e-08)|COAD - Colon adenocarcinoma(152;1.7e-06)|BRCA - Breast invasive adenocarcinoma(304;0.00248)|KIRC - Kidney renal clear cell carcinoma(1967;0.00273)|STAD - Stomach adenocarcinoma(196;0.00303)|READ - Rectum adenocarcinoma(331;0.0649)		AAGCGGATTTCTACCCTTACC	0.458000													26	112					0	0	1	0	0
EPB41	2035	broad.mit.edu	37	1	29342242	29342242	+	Missense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr1:29342242C>G	uc001brm.1	+	5	875	c.868C>G	c.(868-870)CCA>GCA	p.P290A	EPB41_uc001brg.1_Missense_Mutation_p.P81A|EPB41_uc001brh.1_Missense_Mutation_p.P81A|EPB41_uc001bri.1_Missense_Mutation_p.P255A|EPB41_uc001brj.1_Missense_Mutation_p.P81A|EPB41_uc009vtk.1_Missense_Mutation_p.P255A|EPB41_uc001brk.2_Missense_Mutation_p.P290A|EPB41_uc001brl.1_Missense_Mutation_p.P290A|EPB41_uc009vtl.1_Missense_Mutation_p.P81A|EPB41_uc009vtm.1_Translation_Start_Site	NM_203342	NP_976217	P11171	41_HUMAN	erythrocyte membrane protein band 4.1	290	FERM.				blood circulation|cortical actin cytoskeleton organization|positive regulation of protein binding	extrinsic to membrane|Golgi apparatus|nucleus|plasma membrane|protein complex|spectrin|spectrin-associated cytoskeleton	1-phosphatidylinositol binding|actin binding|spectrin binding|structural constituent of cytoskeleton			ovary(1)	1		Colorectal(325;3.46e-05)|Prostate(1639;0.000244)|Lung NSC(340;0.00328)|all_lung(284;0.00412)|Breast(348;0.00765)|all_neural(195;0.0199)|Ovarian(437;0.0228)|Myeloproliferative disorder(586;0.0255)|Medulloblastoma(700;0.123)		Colorectal(126;3.12e-07)|COAD - Colon adenocarcinoma(152;1.21e-05)|STAD - Stomach adenocarcinoma(196;0.00395)|KIRC - Kidney renal clear cell carcinoma(1967;0.0249)|BRCA - Breast invasive adenocarcinoma(304;0.0289)|READ - Rectum adenocarcinoma(331;0.0757)		AAAGTTTTATCCACCTGACCC	0.274000													11	73					0	0	1	0	0
EIF3I	8668	broad.mit.edu	37	1	32696563	32696563	+	Missense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr1:32696563G>C	uc001bur.3	+	11	1372	c.839G>C	c.(838-840)AGA>ACA	p.R280T	EIF3I_uc009vuc.2_Missense_Mutation_p.R280T|EIF3I_uc001bus.2_Missense_Mutation_p.R232T	NM_003757	NP_003748	Q13347	EIF3I_HUMAN	eukaryotic translation initiation factor 3,	280						cytosol|eukaryotic translation initiation factor 3 complex	protein binding|translation initiation factor activity			ovary(1)	1		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0837)|Ovarian(437;0.101)|Breast(348;0.212)				GAGTTTGGAAGAGTCAAGGGT	0.473000													29	131					0	0	1	0	0
EIF2C4	192670	broad.mit.edu	37	1	36297506	36297506	+	Missense_Mutation	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr1:36297506G>A	uc001bzj.1	+	9	1280	c.1090G>A	c.(1090-1092)GAC>AAC	p.D364N		NM_017629	NP_060099	Q9HCK5	AGO4_HUMAN	eukaryotic translation initiation factor 2C, 4	364					mRNA catabolic process|negative regulation of translation involved in gene silencing by miRNA	cytoplasmic mRNA processing body|cytosol	protein binding|RNA binding			ovary(1)	1		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0887)				ATCTGCTCCTGACAGACAGGA	0.433000													26	82					0	0	1	0	0
TEKT2	27285	broad.mit.edu	37	1	36550776	36550776	+	Missense_Mutation	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr1:36550776G>A	uc001bzr.2	+	3	296	c.169G>A	c.(169-171)GAA>AAA	p.E57K	TEKT2_uc001bzs.2_5'UTR	NM_014466	NP_055281	Q9UIF3	TEKT2_HUMAN	tektin 2	57					cell projection organization|microtubule cytoskeleton organization	actin cytoskeleton|cilium axoneme|flagellar axoneme|focal adhesion|microtubule|nucleolus					0		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.164)				CATTTGGGATGAACATGACAA	0.532000													18	97					0	0	1	0	0
ADPRHL2	54936	broad.mit.edu	37	1	36558904	36558904	+	Missense_Mutation	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr1:36558904G>A	uc001bzt.2	+	6	1062	c.1009G>A	c.(1009-1011)GAG>AAG	p.E337K	ADPRHL2_uc001bzu.2_Missense_Mutation_p.E183K	NM_017825	NP_060295	Q9NX46	ARHL2_HUMAN	ADP-ribosylhydrolase like 2	337						cytoplasm|nucleus	metal ion binding|poly(ADP-ribose) glycohydrolase activity			pancreas(1)	1		Myeloproliferative disorder(586;0.0393)				TCAGGTGCCAGAGAGCTGGCA	0.547000													5	202					0	0	1	0	0
ZC3H12A	80149	broad.mit.edu	37	1	37948415	37948415	+	Missense_Mutation	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr1:37948415G>A	uc001cbb.3	+	6	1153	c.1003G>A	c.(1003-1005)GAT>AAT	p.D335N	ZC3H12A_uc001cbc.1_Missense_Mutation_p.D130N	NM_025079	NP_079355	Q5D1E8	ZC12A_HUMAN	zinc finger CCCH-type containing 12A	335					angiogenesis|apoptosis|cell differentiation	cytoplasm|nucleus|plasma membrane	endonuclease activity|metal ion binding			ovary(2)	2		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.164)				CTCTGTGGCAGATGAGCTCCG	0.592000													4	125					0	0	1	0	0
SNIP1	79753	broad.mit.edu	37	1	38005984	38005984	+	Missense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr1:38005984C>G	uc001cbi.2	-	3	773	c.700G>C	c.(700-702)GAG>CAG	p.E234Q	SNIP1_uc010oid.1_RNA	NM_024700	NP_078976	Q8TAD8	SNIP1_HUMAN	Smad nuclear interacting protein	234					production of miRNAs involved in gene silencing by miRNA	nucleus	protein binding			upper_aerodigestive_tract(1)|lung(1)	2		Myeloproliferative disorder(586;0.0393)				TTGGTGTCCTCAAGAAGTGCC	0.473000													15	85					0	0	1	0	0
SNIP1	79753	broad.mit.edu	37	1	38019729	38019729	+	Silent	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr1:38019729G>C	uc001cbi.2	-	1	175	c.102C>G	c.(100-102)CTC>CTG	p.L34L	SNIP1_uc010oid.1_RNA|DNALI1_uc001cbj.2_5'Flank|DNALI1_uc010oie.1_5'Flank	NM_024700	NP_078976	Q8TAD8	SNIP1_HUMAN	Smad nuclear interacting protein	34					production of miRNAs involved in gene silencing by miRNA	nucleus	protein binding			upper_aerodigestive_tract(1)|lung(1)	2		Myeloproliferative disorder(586;0.0393)				CTTCTGGGCTGAGACGCTCCT	0.736000													13	40					0	0	1	0	0
KIAA0467	23334	broad.mit.edu	37	1	43886618	43886618	+	5'Flank	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr1:43886618C>G	uc001cjk.1	+						KIAA0467_uc009vws.1_Missense_Mutation_p.T487S	NM_015284	NP_056099	Q5T011	SZT2_HUMAN	hypothetical protein LOC23334							peroxisome					0	all_hematologic(146;0.0958)|Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0505)				TTGTATCGTACCCATGTTATC	0.502000													24	157					0	0	1	0	0
IPO13	9670	broad.mit.edu	37	1	44424532	44424532	+	Missense_Mutation	SNP	A	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr1:44424532A>C	uc001ckx.2	+	11	2794	c.1999A>C	c.(1999-2001)AAG>CAG	p.K667Q		NM_014652	NP_055467	O94829	IPO13_HUMAN	importin 13	667	HEAT 11.				protein import into nucleus	cytoplasm|nucleus	protein binding|protein transporter activity			central_nervous_system(1)	1	Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0821)				TGAGCTTCGGAAGCTGCCAGT	0.557000													11	76					0	0	1	0	0
NASP	4678	broad.mit.edu	37	1	46073526	46073526	+	Missense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr1:46073526G>C	uc001coi.1	+	6	1045	c.943G>C	c.(943-945)GAG>CAG	p.E315Q	NASP_uc010olq.1_Missense_Mutation_p.E278Q|NASP_uc001coh.1_Missense_Mutation_p.E317Q|NASP_uc001coj.1_Intron|NASP_uc010olr.1_Missense_Mutation_p.E251Q|NASP_uc001cok.1_Missense_Mutation_p.E198Q	NM_002482	NP_002473	P49321	NASP_HUMAN	nuclear autoantigenic sperm protein isoform 2	315	Glu-rich (acidic).				blastocyst development|cell cycle|cell proliferation|DNA replication|histone exchange|protein transport	cytoplasm|nucleus	Hsp90 protein binding			ovary(1)	1	Acute lymphoblastic leukemia(166;0.155)|Lung SC(450;0.211)					GGACGAGCCAGAGGAGAAGGT	0.537000													15	35					0	0	1	0	0
RAD54L	8438	broad.mit.edu	37	1	46726266	46726266	+	Missense_Mutation	SNP	C	T	T	rs149141765		TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr1:46726266C>T	uc009vye.2	+	7	574	c.460C>T	c.(460-462)CGG>TGG	p.R154W	RAD54L_uc001cpl.2_Missense_Mutation_p.R154W|RAD54L_uc001cpm.1_5'UTR	NM_001142548	NP_001136020	Q92698	RAD54_HUMAN	RAD54-like protein	154					meiosis	nucleus	ATP binding|DNA binding|helicase activity			ovary(2)|skin(1)	3	Acute lymphoblastic leukemia(166;0.155)	Breast(1374;0.0634)		KIRC - Kidney renal clear cell carcinoma(1967;0.000896)		TAAGGTTTTGCGGCCTCATCA	0.537000								Direct_reversal_of_damage|Homologous_recombination					5	138					0	0	1	0	0
MKNK1	8569	broad.mit.edu	37	1	47059806	47059806	+	Missense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr1:47059806G>C	uc001cqb.2	-	2	257	c.13C>G	c.(13-15)CAA>GAA	p.Q5E	MKNK1_uc010omd.1_5'UTR|MKNK1_uc001cqc.2_Missense_Mutation_p.Q5E|MKNK1_uc009vyi.2_Missense_Mutation_p.Q5E|MKNK1_uc010ome.1_5'UTR|MKNK1_uc009vyj.2_5'UTR|MKNK1_uc001cqd.2_5'UTR|MKNK1_uc010omf.1_Missense_Mutation_p.Q5E	NM_003684	NP_003675	Q9BUB5	MKNK1_HUMAN	MAP kinase-interacting serine/threonine kinase 1	5					intracellular protein kinase cascade|peptidyl-serine phosphorylation|regulation of translation	cytoplasm|nucleus	ATP binding|protein binding|protein serine/threonine kinase activity			lung(2)	2	Acute lymphoblastic leukemia(166;0.155)					TCCAACTTTTGAGAAGATACC	0.378000													20	71					0	0	1	0	0
CYP4Z1	199974	broad.mit.edu	37	1	47571830	47571830	+	Silent	SNP	G	A	A	rs151236717	byFrequency	TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr1:47571830G>A	uc001cqu.1	+	9	1101	c.1098G>A	c.(1096-1098)ACG>ACA	p.T366T		NM_178134	NP_835235	Q86W10	CP4Z1_HUMAN	cytochrome P450 4Z1	366	Lumenal (Potential).					endoplasmic reticulum membrane|integral to membrane|microsome	aromatase activity|electron carrier activity|heme binding			skin(1)	1						CTTACACCACGATGTGCATCA	0.522000													38	148					0	0	1	0	0
NRD1	4898	broad.mit.edu	37	1	52289371	52289371	+	Missense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr1:52289371G>C	uc001ctc.3	-	9	1650	c.1328C>G	c.(1327-1329)TCT>TGT	p.S443C	NRD1_uc009vzb.2_Missense_Mutation_p.S138C|NRD1_uc001ctd.3_Missense_Mutation_p.S375C|NRD1_uc001cte.2_Missense_Mutation_p.S311C|NRD1_uc001ctf.2_Missense_Mutation_p.S375C|NRD1_uc010ong.1_RNA|NRD1_uc009vzc.1_Missense_Mutation_p.S243C	NM_002525	NP_002516	O43847	NRDC_HUMAN	nardilysin isoform a	374					cell migration|cell proliferation|neuromuscular junction development|positive regulation of membrane protein ectodomain proteolysis|proteolysis|regulation of endopeptidase activity	cell surface|cytosol	epidermal growth factor binding|metalloendopeptidase activity|zinc ion binding				0						GTAATGAGAAGAGTAGTAACG	0.368000													3	146					0	0	1	0	0
ORC1L	4998	broad.mit.edu	37	1	52861930	52861930	+	Missense_Mutation	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr1:52861930G>A	uc001ctt.2	-	5	728	c.509C>T	c.(508-510)TCA>TTA	p.S170L	ORC1L_uc010oni.1_Missense_Mutation_p.S170L|ORC1L_uc001ctu.2_Missense_Mutation_p.S170L|ORC1L_uc009vzd.2_5'UTR	NM_004153	NP_004144	Q13415	ORC1_HUMAN	origin recognition complex, subunit 1	170	BAH.				cell cycle checkpoint|DNA-dependent DNA replication initiation|M/G1 transition of mitotic cell cycle|regulation of transcription involved in G1/S phase of mitotic cell cycle|S phase of mitotic cell cycle	cytosol|nuclear origin of replication recognition complex|nucleolus|nucleoplasm|plasma membrane	ATP binding|DNA binding|nucleoside-triphosphatase activity|protein binding				0						AAATAGTTCTGAGGAAAGTGG	0.468000													4	183					0	0	1	0	0
ORC1L	4998	broad.mit.edu	37	1	52861944	52861944	+	Silent	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr1:52861944G>A	uc001ctt.2	-	5	714	c.495C>T	c.(493-495)TTC>TTT	p.F165F	ORC1L_uc010oni.1_Silent_p.F165F|ORC1L_uc001ctu.2_Silent_p.F165F|ORC1L_uc009vzd.2_5'UTR	NM_004153	NP_004144	Q13415	ORC1_HUMAN	origin recognition complex, subunit 1	165	BAH.				cell cycle checkpoint|DNA-dependent DNA replication initiation|M/G1 transition of mitotic cell cycle|regulation of transcription involved in G1/S phase of mitotic cell cycle|S phase of mitotic cell cycle	cytosol|nuclear origin of replication recognition complex|nucleolus|nucleoplasm|plasma membrane	ATP binding|DNA binding|nucleoside-triphosphatase activity|protein binding				0						AAAGTGGCCTGAATTTCTTCT	0.443000													4	179					0	0	1	0	0
DIO1	1733	broad.mit.edu	37	1	54371905	54371905	+	Nonsense_Mutation	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr1:54371905C>T	uc010onx.1	+	4	642	c.619C>T	c.(619-621)CAG>TAG	p.Q207*	DIO1_uc010onw.1_Nonsense_Mutation_p.Q143*|DIO1_uc009vzl.2_Intron|DIO1_uc001cwb.2_Nonsense_Mutation_p.Q159*|DIO1_uc010ony.1_Intron|DIO1_uc001cwd.2_RNA|DIO1_uc001cwe.2_RNA|DIO1_uc001cwf.2_RNA|DIO1_uc001cwg.2_Intron	NM_000792	NP_000783	P49895	IOD1_HUMAN	deiodinase, iodothyronine, type I isoform a	207					hormone biosynthetic process|thyroid hormone generation	endoplasmic reticulum membrane|integral to membrane|plasma membrane	selenium binding|thyroxine 5'-deiodinase activity				0						CCAGAGCAGCCAGCTCTACGC	0.612000													13	32					0	0	1	0	0
C1orf177	163747	broad.mit.edu	37	1	55277499	55277499	+	Silent	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr1:55277499G>A	uc001cyb.3	+	5	567	c.513G>A	c.(511-513)GAG>GAA	p.E171E	C1orf177_uc001cya.3_Silent_p.E171E	NM_001110533	NP_001104003	Q3ZCV2	CA177_HUMAN	hypothetical protein LOC163747 isoform 2	171											0						ATTATGGGGAGAAGGGTAACC	0.587000													15	61					0	0	1	0	0
PPAP2B	8613	broad.mit.edu	37	1	56990070	56990070	+	Missense_Mutation	SNP	C	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr1:56990070C>A	uc001cyj.1	-	4	955	c.454G>T	c.(454-456)GGG>TGG	p.G152W		NM_177414	NP_803133	O14495	LPP3_HUMAN	phosphatidic acid phosphatase type 2B	152	Lumenal (Potential).				canonical Wnt receptor signaling pathway involved in positive regulation of cell-cell adhesion|canonical Wnt receptor signaling pathway involved in positive regulation of endothelial cell migration|canonical Wnt receptor signaling pathway involved in positive regulation of wound healing|germ cell migration|homotypic cell-cell adhesion|negative regulation of protein phosphorylation|positive regulation of sequence-specific DNA binding transcription factor activity|protein stabilization|sphingolipid metabolic process	adherens junction|Golgi apparatus|integral to membrane	phosphatidate phosphatase activity|phosphoprotein phosphatase activity|protein binding|sphingosine-1-phosphate phosphatase activity				0						CGCAGGCGCCCTATGGACACT	0.512000													4	177					0.00909568	0.0091621	1	1	0
DAB1	1600	broad.mit.edu	37	1	57480998	57480998	+	Silent	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr1:57480998C>T	uc001cys.1	-	14	1676	c.1002G>A	c.(1000-1002)CCG>CCA	p.P334P	DAB1_uc001cyt.1_Silent_p.P332P|DAB1_uc001cyq.1_Silent_p.P332P|DAB1_uc001cyr.1_Silent_p.P248P|DAB1_uc009vzw.1_Silent_p.P316P|DAB1_uc009vzx.1_Silent_p.P334P	NM_021080	NP_066566	O75553	DAB1_HUMAN	disabled homolog 1	367					cell differentiation|nervous system development					skin(2)|ovary(1)	3						GCTGAGCCCCCGGCATCACCT	0.667000													22	85					0	0	1	0	0
FOXD3	27022	broad.mit.edu	37	1	63789491	63789491	+	Missense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr1:63789491G>C	uc001dax.2	+	1	762	c.762G>C	c.(760-762)CAG>CAC	p.Q254H		NM_012183	NP_036315	Q9UJU5	FOXD3_HUMAN	forkhead box D3	254					axon extension involved in axon guidance|branching involved in ureteric bud morphogenesis|cartilage development|embryonic placenta development|enteric nervous system development|iridophore differentiation|kidney development|lateral line nerve glial cell development|melanocyte differentiation|negative regulation of transcription from RNA polymerase II promoter|neural crest cell migration|pattern specification process|peripheral nervous system development|positive regulation of transcription from RNA polymerase II promoter|regulation of sequence-specific DNA binding transcription factor activity|sympathetic nervous system development|trophectodermal cell differentiation	transcription factor complex	DNA bending activity|double-stranded DNA binding|promoter binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription activator activity|transcription factor binding				0						TCATGATGCAGAGCTTCGGCG	0.602000													11	28					0	0	1	0	0
JAK1	3716	broad.mit.edu	37	1	65332606	65332606	+	Silent	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr1:65332606G>A	uc001dbu.1	-	7	1182	c.933C>T	c.(931-933)CTC>CTT	p.L311L	JAK1_uc009wam.1_Silent_p.L299L	NM_002227	NP_002218	P23458	JAK1_HUMAN	janus kinase 1	311	FERM.				interferon-gamma-mediated signaling pathway|regulation of interferon-gamma-mediated signaling pathway|regulation of type I interferon-mediated signaling pathway|response to antibiotic|type I interferon-mediated signaling pathway	cytoskeleton|cytosol|endomembrane system|membrane|nucleus	ATP binding|growth hormone receptor binding|non-membrane spanning protein tyrosine kinase activity			haematopoietic_and_lymphoid_tissue(34)|prostate(7)|soft_tissue(6)|lung(4)|breast(3)|central_nervous_system(2)|liver(2)|large_intestine(1)|stomach(1)|ovary(1)	61				BRCA - Breast invasive adenocarcinoma(111;0.0485)		CTTCGTAGTAGAGAACGTTTC	0.413000			Mis		ALL								43	124					0	0	1	0	0
MIER1	57708	broad.mit.edu	37	1	67423853	67423853	+	Missense_Mutation	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr1:67423853G>A	uc001dde.2	+	5	585	c.451G>A	c.(451-453)GAT>AAT	p.D151N	MIER1_uc010opf.1_Missense_Mutation_p.D115N|MIER1_uc009way.2_Missense_Mutation_p.D115N|MIER1_uc001ddc.2_Missense_Mutation_p.D151N|MIER1_uc001ddh.2_Missense_Mutation_p.D35N|MIER1_uc001ddf.2_Missense_Mutation_p.D115N|MIER1_uc001ddg.2_Missense_Mutation_p.D71N|MIER1_uc010opg.1_Missense_Mutation_p.D115N|MIER1_uc001ddj.1_Missense_Mutation_p.D98N|MIER1_uc001ddi.2_Missense_Mutation_p.D98N	NM_001077700	NP_001071168	Q8N108	MIER1_HUMAN	mesoderm induction early response 1 isoform b	122	Glu-rich.				positive regulation of I-kappaB kinase/NF-kappaB cascade|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	DNA binding|signal transducer activity			ovary(1)	1						aggtgaagatgatgaagaTGC	0.259000													12	72					0	0	1	0	0
DIRAS3	9077	broad.mit.edu	37	1	68512353	68512353	+	Missense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr1:68512353C>G	uc001ded.2	-	2	923	c.628G>C	c.(628-630)GAG>CAG	p.E210Q	uc001deb.1_Intron|uc001dec.1_Intron	NM_004675	NP_004666	O95661	DIRA3_HUMAN	DIRAS family, GTP-binding RAS-like 3	210					regulation of cyclin-dependent protein kinase activity|regulation of gene expression by genetic imprinting|small GTPase mediated signal transduction	plasma membrane	GTP binding|GTPase activity			skin(1)	1						GATTTCTTCTCGGGCTCCTGG	0.517000													39	190					0	0	1	0	0
IFI44	10561	broad.mit.edu	37	1	79120726	79120726	+	Missense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr1:79120726G>C	uc001dip.3	+	4	646	c.522G>C	c.(520-522)TTG>TTC	p.L174F	IFI44_uc010orr.1_Missense_Mutation_p.L174F|IFI44_uc010ors.1_5'UTR	NM_006417	NP_006408	Q8TCB0	IFI44_HUMAN	interferon-induced, hepatitis C-associated	174					response to virus	cytoplasm				ovary(1)|central_nervous_system(1)	2						TGTCTGCCTTGAGAACTTATG	0.418000													20	79					0	0	1	0	0
ZNHIT6	54680	broad.mit.edu	37	1	86173505	86173505	+	Missense_Mutation	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr1:86173505C>T	uc001dlh.2	-	1	597	c.463G>A	c.(463-465)GAG>AAG	p.E155K	ZNHIT6_uc010osc.1_Missense_Mutation_p.E116K	NM_017953	NP_060423	Q9NWK9	BCD1_HUMAN	zinc finger, HIT type 6	155	Glu-rich.				box C/D snoRNP assembly|ribosome biogenesis	pre-snoRNP complex	identical protein binding|metal ion binding			large_intestine(1)	1						TTATCCTTCTCTTCCTTCACT	0.408000													4	226					0	0	1	0	0
ZNHIT6	54680	broad.mit.edu	37	1	86173811	86173811	+	Missense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr1:86173811C>G	uc001dlh.2	-	1	291	c.157G>C	c.(157-159)GGG>CGG	p.G53R	ZNHIT6_uc010osc.1_Missense_Mutation_p.G53R	NM_017953	NP_060423	Q9NWK9	BCD1_HUMAN	zinc finger, HIT type 6	53	Glu-rich.				box C/D snoRNP assembly|ribosome biogenesis	pre-snoRNP complex	identical protein binding|metal ion binding			large_intestine(1)	1						TCCTTTATCCCTGTCAGCCCT	0.582000													5	213					0	0	1	0	0
CLCA4	22802	broad.mit.edu	37	1	87043590	87043590	+	Missense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr1:87043590G>C	uc009wcs.2	+	12	2001	c.1957G>C	c.(1957-1959)GAT>CAT	p.D653H	CLCA4_uc009wct.2_Missense_Mutation_p.D416H|CLCA4_uc009wcu.2_Missense_Mutation_p.D473H	NM_012128	NP_036260	Q14CN2	CLCA4_HUMAN	chloride channel accessory 4	653						apical plasma membrane|extracellular region|integral to plasma membrane	chloride channel activity			ovary(2)	2		Lung NSC(277;0.238)		all cancers(265;0.0202)|Epithelial(280;0.0404)		ACAAGGCGCTGATTCTTTCAA	0.368000													12	41					0	0	1	0	0
CCBL2	56267	broad.mit.edu	37	1	89408752	89408752	+	Missense_Mutation	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr1:89408752G>A	uc001dmp.2	-	13	1615	c.1238C>T	c.(1237-1239)TCA>TTA	p.S413L	CCBL2_uc001dmq.2_Missense_Mutation_p.S379L|CCBL2_uc001dmr.2_Missense_Mutation_p.S249L	NM_001008661	NP_001008661	Q6YP21	KAT3_HUMAN	kynurenine aminotransferase III isoform 1	413					biosynthetic process|kynurenine metabolic process|tryptophan catabolic process		cysteine-S-conjugate beta-lyase activity|kynurenine-glyoxylate transaminase activity|kynurenine-oxoglutarate transaminase activity|pyridoxal phosphate binding			ovary(1)	1		Lung NSC(277;0.123)		all cancers(265;0.0117)|Epithelial(280;0.0341)	L-Glutamic Acid(DB00142)|Pyridoxal Phosphate(DB00114)	ACAGAATGCTGAAACGGGGAT	0.313000													36	159					0	0	1	0	0
DNTTIP2	30836	broad.mit.edu	37	1	94337712	94337712	+	Silent	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr1:94337712G>C	uc001dqf.2	-	5	2021	c.1983C>G	c.(1981-1983)CTC>CTG	p.L661L	DNTTIP2_uc010otm.1_RNA	NM_014597	NP_055412	Q5QJE6	TDIF2_HUMAN	deoxynucleotidyltransferase, terminal,	661					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus					0		all_lung(203;0.0111)|Lung NSC(277;0.0347)		all cancers(265;0.00679)|GBM - Glioblastoma multiforme(16;0.0278)|Epithelial(280;0.128)		TCAGTGCTTTGAGATCATTTT	0.388000													4	253					0	0	1	0	0
AGL	178	broad.mit.edu	37	1	100340947	100340947	+	Missense_Mutation	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr1:100340947G>A	uc001dsi.1	+	10	1619	c.1219G>A	c.(1219-1221)GAA>AAA	p.E407K	AGL_uc001dsj.1_Missense_Mutation_p.E407K|AGL_uc001dsk.1_Missense_Mutation_p.E407K|AGL_uc001dsl.1_Missense_Mutation_p.E407K|AGL_uc001dsm.1_Missense_Mutation_p.E391K|AGL_uc001dsn.1_Missense_Mutation_p.E390K	NM_000642	NP_000633	P35573	GDE_HUMAN	amylo-1,6-glucosidase,	407	4-alpha-glucanotransferase.				glucose metabolic process|glycogen biosynthetic process|glycogen catabolic process	cytosol|isoamylase complex|nucleus	4-alpha-glucanotransferase activity|amylo-alpha-1,6-glucosidase activity|cation binding			ovary(1)|central_nervous_system(1)|skin(1)	3		all_epithelial(167;2.2e-06)|all_lung(203;0.000295)|Lung NSC(277;0.00131)		Epithelial(280;0.15)|COAD - Colon adenocarcinoma(174;0.151)|Lung(183;0.209)|all cancers(265;0.237)		TGTGTTTTATGAACGACTGGC	0.363000													4	86					0	0	1	0	0
CELSR2	1952	broad.mit.edu	37	1	109814995	109814995	+	Missense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr1:109814995G>C	uc001dxa.3	+	29	8083	c.8022G>C	c.(8020-8022)AAG>AAC	p.K2674N		NM_001408	NP_001399	Q9HCU4	CELR2_HUMAN	cadherin EGF LAG seven-pass G-type receptor 2	2674	Cytoplasmic (Potential).				dendrite morphogenesis|homophilic cell adhesion|neural plate anterior/posterior regionalization|neuropeptide signaling pathway|regulation of cell-cell adhesion|regulation of transcription, DNA-dependent|Wnt receptor signaling pathway	cytoplasm|integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity|protein binding			ovary(4)|lung(3)|skin(1)	8		all_epithelial(167;0.000114)|all_lung(203;0.000321)|Lung NSC(277;0.000626)|Breast(1374;0.244)		Colorectal(144;0.0296)|Lung(183;0.067)|COAD - Colon adenocarcinoma(174;0.114)|Epithelial(280;0.193)|all cancers(265;0.219)		GCTCGGGCAAGAGTCAGCCCA	0.662000													34	184					0	0	1	0	0
FAM40A	85369	broad.mit.edu	37	1	110585728	110585728	+	Missense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr1:110585728G>C	uc001dza.1	+	9	923	c.904G>C	c.(904-906)GAG>CAG	p.E302Q	FAM40A_uc001dyz.1_Missense_Mutation_p.E207Q|FAM40A_uc009wfp.1_Missense_Mutation_p.E126Q	NM_033088	NP_149079	Q5VSL9	FA40A_HUMAN	hypothetical protein LOC85369	302						nucleus	protein binding			ovary(3)|large_intestine(1)	4		all_cancers(81;8.51e-05)|all_epithelial(167;3.58e-05)|all_lung(203;0.000116)|Lung NSC(277;0.000233)		Lung(183;0.0154)|all cancers(265;0.0732)|Epithelial(280;0.0781)|Colorectal(144;0.115)|LUSC - Lung squamous cell carcinoma(189;0.137)		AGGCGGCTTTGAGGAGCTGCA	0.582000													10	20					0	0	1	0	0
RBM15	64783	broad.mit.edu	37	1	110882622	110882622	+	Missense_Mutation	SNP	G	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr1:110882622G>T	uc001dzl.1	+	1	678	c.595G>T	c.(595-597)GAT>TAT	p.D199Y	RBM15_uc001dzm.1_Missense_Mutation_p.D199Y|uc001dzj.2_5'Flank	NM_022768	NP_073605	Q96T37	RBM15_HUMAN	RNA binding motif protein 15	199	RRM 1.				interspecies interaction between organisms	nucleus	nucleotide binding|protein binding|RNA binding			ovary(3)	3		all_cancers(81;2.89e-06)|all_epithelial(167;2.96e-06)|all_lung(203;0.000116)|Lung NSC(277;0.000233)|Breast(1374;0.0634)		BRCA - Breast invasive adenocarcinoma(282;0.000224)|Epithelial(280;0.000476)|Kidney(133;0.000539)|KIRC - Kidney renal clear cell carcinoma(1967;0.000716)|all cancers(265;0.00144)|Lung(183;0.0238)|Colorectal(144;0.103)|LUSC - Lung squamous cell carcinoma(189;0.135)		ACGCTTCGGTGATGTAAGTGT	0.577000			T	MKL1	acute megakaryocytic leukemia						OREG0013656	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	21	81					1.96895e-08	2.02071e-08	1	1	0
RBM15	64783	broad.mit.edu	37	1	110882687	110882687	+	Silent	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr1:110882687G>A	uc001dzl.1	+	1	743	c.660G>A	c.(658-660)GTG>GTA	p.V220V	RBM15_uc001dzm.1_Silent_p.V220V|uc001dzj.2_5'Flank	NM_022768	NP_073605	Q96T37	RBM15_HUMAN	RNA binding motif protein 15	220	RRM 1.				interspecies interaction between organisms	nucleus	nucleotide binding|protein binding|RNA binding			ovary(3)	3		all_cancers(81;2.89e-06)|all_epithelial(167;2.96e-06)|all_lung(203;0.000116)|Lung NSC(277;0.000233)|Breast(1374;0.0634)		BRCA - Breast invasive adenocarcinoma(282;0.000224)|Epithelial(280;0.000476)|Kidney(133;0.000539)|KIRC - Kidney renal clear cell carcinoma(1967;0.000716)|all cancers(265;0.00144)|Lung(183;0.0238)|Colorectal(144;0.103)|LUSC - Lung squamous cell carcinoma(189;0.135)		TAGCCTTTGTGAACTTCCGGC	0.582000			T	MKL1	acute megakaryocytic leukemia						OREG0013656	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	26	94					0	0	1	0	0
MOV10	4343	broad.mit.edu	37	1	113238053	113238053	+	Missense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr1:113238053C>G	uc001eck.2	+	11	1906	c.1636C>G	c.(1636-1638)CCC>GCC	p.P546A	MOV10_uc001ecl.2_Intron|MOV10_uc001ecn.2_Missense_Mutation_p.P546A|MOV10_uc001ecm.2_Missense_Mutation_p.P486A|MOV10_uc009wgj.1_Missense_Mutation_p.P486A	NM_001130079	NP_001123551	Q9HCE1	MOV10_HUMAN	Mov10, Moloney leukemia virus 10, homolog	546					mRNA cleavage involved in gene silencing by miRNA|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasmic mRNA processing body	ATP binding|helicase activity|protein binding|RNA binding			ovary(4)|skin(1)	5	Lung SC(450;0.246)	all_cancers(81;3.31e-11)|all_epithelial(167;5.69e-10)|all_lung(203;3.73e-05)|Breast(1374;0.000525)|Lung NSC(69;0.000954)|Ovarian(761;0.0367)|Lung SC(238;0.114)		OV - Ovarian serous cystadenocarcinoma(397;3.99e-67)|all cancers(265;1e-62)|Epithelial(280;4.78e-61)|Lung(183;0.0234)|Colorectal(144;0.0686)|READ - Rectum adenocarcinoma(129;0.0929)|COAD - Colon adenocarcinoma(174;0.111)|LUSC - Lung squamous cell carcinoma(189;0.133)|BRCA - Breast invasive adenocarcinoma(282;0.24)		GAAGCACTTGCCCAAAGCCCA	0.562000													19	68					0	0	1	0	0
PPM1J	333926	broad.mit.edu	37	1	113256227	113256227	+	Missense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr1:113256227G>C	uc001ect.1	-	2	360	c.333C>G	c.(331-333)ATC>ATG	p.I111M	PPM1J_uc009wgl.1_5'Flank|PPM1J_uc001ecs.1_Translation_Start_Site	NM_005167	NP_005158	Q5JR12	PPM1J_HUMAN	protein phosphatase 1J (PP2C domain containing)	111										breast(2)|central_nervous_system(1)	3	Lung SC(450;0.246)	all_cancers(81;1.44e-07)|all_epithelial(167;7.64e-07)|all_lung(203;2.16e-05)|Lung NSC(69;3.86e-05)		Lung(183;0.0234)|all cancers(265;0.0246)|Epithelial(280;0.0342)|Colorectal(144;0.0686)|COAD - Colon adenocarcinoma(174;0.111)|LUSC - Lung squamous cell carcinoma(189;0.133)		TGCCAGCATTGATGACCCTGC	0.577000													23	87					0	0	1	0	0
MAGI3	260425	broad.mit.edu	37	1	114223935	114223935	+	Missense_Mutation	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr1:114223935G>A	uc001edk.2	+	20	3486	c.3305G>A	c.(3304-3306)GGA>GAA	p.G1102E	MAGI3_uc001edh.3_Missense_Mutation_p.G1127E|MAGI3_uc001edi.3_Missense_Mutation_p.G1102E|MAGI3_uc010owm.1_Missense_Mutation_p.G1127E|MAGI3_uc001edj.2_Missense_Mutation_p.G823E|MAGI3_uc009wgo.2_RNA	NM_001142782	NP_001136254	Q5TCQ9	MAGI3_HUMAN	membrane-associated guanylate kinase-related  3	1127	PDZ 6.				apoptosis|interspecies interaction between organisms|intracellular signal transduction	nucleus|tight junction	ATP binding|guanylate kinase activity|protein binding			lung(3)|ovary(2)|central_nervous_system(1)	6	Lung SC(450;0.184)	all_cancers(81;2.34e-09)|all_epithelial(167;7.41e-09)|all_lung(203;7.13e-06)|Lung NSC(69;1.2e-05)		Lung(183;0.0234)|Colorectal(144;0.0686)|all cancers(265;0.0792)|Epithelial(280;0.0866)|COAD - Colon adenocarcinoma(174;0.111)|LUSC - Lung squamous cell carcinoma(189;0.133)		TTGAGGCCAGGAACTGGCTTG	0.413000													21	81					0	0	1	0	0
ATP1A1	476	broad.mit.edu	37	1	116929996	116929996	+	Silent	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr1:116929996C>T	uc001ege.2	+	4	609	c.270C>T	c.(268-270)ATC>ATT	p.I90I	ATP1A1_uc010owv.1_Silent_p.I59I|ATP1A1_uc010oww.1_Silent_p.I90I|ATP1A1_uc010owx.1_Silent_p.I59I	NM_000701	NP_000692	P05023	AT1A1_HUMAN	Na+/K+ -ATPase alpha 1 subunit isoform a	90	Helical; (Potential).				ATP biosynthetic process	melanosome|sodium:potassium-exchanging ATPase complex	ATP binding|metal ion binding|protein binding|sodium:potassium-exchanging ATPase activity			ovary(1)	1	Lung SC(450;0.225)	all_cancers(81;1.28e-06)|all_epithelial(167;3.48e-07)|all_lung(203;2.64e-06)|Lung NSC(69;1.98e-05)		Lung(183;0.0164)|LUSC - Lung squamous cell carcinoma(189;0.0548)|Colorectal(144;0.0825)|COAD - Colon adenocarcinoma(174;0.127)|all cancers(265;0.24)	Acetyldigitoxin(DB00511)|Almitrine(DB01430)|Aluminium(DB01370)|Bepridil(DB01244)|Bretylium(DB01158)|Captopril(DB01197)|Deslanoside(DB01078)|Diazoxide(DB01119)|Digitoxin(DB01396)|Digoxin(DB00390)|Esomeprazole(DB00736)|Ethacrynic acid(DB00903)|Furosemide(DB00695)|Hydroflumethiazide(DB00774)|Methyclothiazide(DB00232)|Ouabain(DB01092)|Pantoprazole(DB00213)|Trichlormethiazide(DB01021)	CTGAATGGATCAAGTTTTGTC	0.522000													4	146					0	0	1	0	0
ATP1A1	476	broad.mit.edu	37	1	116931552	116931552	+	Nonsense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr1:116931552C>G	uc001ege.2	+	7	1004	c.665C>G	c.(664-666)TCA>TGA	p.S222*	ATP1A1_uc010owv.1_Nonsense_Mutation_p.S191*|ATP1A1_uc010oww.1_Nonsense_Mutation_p.S222*|ATP1A1_uc010owx.1_Nonsense_Mutation_p.S191*	NM_000701	NP_000692	P05023	AT1A1_HUMAN	Na+/K+ -ATPase alpha 1 subunit isoform a	222	Cytoplasmic (Potential).				ATP biosynthetic process	melanosome|sodium:potassium-exchanging ATPase complex	ATP binding|metal ion binding|protein binding|sodium:potassium-exchanging ATPase activity			ovary(1)	1	Lung SC(450;0.225)	all_cancers(81;1.28e-06)|all_epithelial(167;3.48e-07)|all_lung(203;2.64e-06)|Lung NSC(69;1.98e-05)		Lung(183;0.0164)|LUSC - Lung squamous cell carcinoma(189;0.0548)|Colorectal(144;0.0825)|COAD - Colon adenocarcinoma(174;0.127)|all cancers(265;0.24)	Acetyldigitoxin(DB00511)|Almitrine(DB01430)|Aluminium(DB01370)|Bepridil(DB01244)|Bretylium(DB01158)|Captopril(DB01197)|Deslanoside(DB01078)|Diazoxide(DB01119)|Digitoxin(DB01396)|Digoxin(DB00390)|Esomeprazole(DB00736)|Ethacrynic acid(DB00903)|Furosemide(DB00695)|Hydroflumethiazide(DB00774)|Methyclothiazide(DB00232)|Ouabain(DB01092)|Pantoprazole(DB00213)|Trichlormethiazide(DB01021)	ACTGGTGAATCAGAACCCCAG	0.443000													3	133					0	0	1	0	0
TTF2	8458	broad.mit.edu	37	1	117626692	117626692	+	Silent	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr1:117626692G>A	uc001egy.2	+	11	1976	c.1956G>A	c.(1954-1956)CTG>CTA	p.L652L		NM_003594	NP_003585	Q9UNY4	TTF2_HUMAN	transcription termination factor, RNA polymerase	652	Helicase ATP-binding.				mRNA processing|regulation of transcription, DNA-dependent|RNA splicing|termination of RNA polymerase II transcription	cytoplasm|spliceosomal complex|transcription elongation factor complex	ATP binding|ATP-dependent helicase activity|DNA binding|DNA-dependent ATPase activity|protein binding|zinc ion binding			ovary(1)	1	Lung SC(450;0.225)	all_cancers(81;4.23e-06)|all_epithelial(167;3.65e-07)|all_lung(203;2.81e-06)|Lung NSC(69;1.98e-05)		Lung(183;0.0553)|Colorectal(144;0.179)|LUSC - Lung squamous cell carcinoma(189;0.19)		CTGCCTCCCTGATCCATCATT	0.453000													42	90					0	0	1	0	0
WDR3	10885	broad.mit.edu	37	1	118482165	118482165	+	Silent	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr1:118482165G>A	uc010oxe.1	+	6	711	c.645G>A	c.(643-645)CTG>CTA	p.L215L	WDR3_uc001ehi.2_Intron|WDR3_uc001ehh.2_Silent_p.L44L	NM_006784	NP_006775	Q9UNX4	WDR3_HUMAN	WD repeat-containing protein 3	215	WD 5.					nuclear membrane|nucleolus				upper_aerodigestive_tract(1)	1	Esophageal squamous(2;0.162)	all_cancers(81;2.72e-05)|Acute lymphoblastic leukemia(138;1e-08)|all_epithelial(167;4.4e-07)|all_lung(203;1.7e-06)|Lung NSC(69;1.98e-05)|Prostate(1639;0.00955)|Breast(1374;0.244)		OV - Ovarian serous cystadenocarcinoma(397;1.39e-08)|Epithelial(280;1.82e-07)|all cancers(265;2.04e-05)|Lung(183;0.0525)|BRCA - Breast invasive adenocarcinoma(282;0.0695)|COAD - Colon adenocarcinoma(174;0.111)|LUSC - Lung squamous cell carcinoma(189;0.185)		ACAGTGAACTGAGGGTATGGG	0.378000													32	121					0	0	1	0	0
WDR3	10885	broad.mit.edu	37	1	118491033	118491033	+	Silent	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr1:118491033G>A	uc010oxe.1	+	13	1494	c.1428G>A	c.(1426-1428)GGG>GGA	p.G476G	WDR3_uc001ehi.2_Intron	NM_006784	NP_006775	Q9UNX4	WDR3_HUMAN	WD repeat-containing protein 3	476	WD 8.					nuclear membrane|nucleolus				upper_aerodigestive_tract(1)	1	Esophageal squamous(2;0.162)	all_cancers(81;2.72e-05)|Acute lymphoblastic leukemia(138;1e-08)|all_epithelial(167;4.4e-07)|all_lung(203;1.7e-06)|Lung NSC(69;1.98e-05)|Prostate(1639;0.00955)|Breast(1374;0.244)		OV - Ovarian serous cystadenocarcinoma(397;1.39e-08)|Epithelial(280;1.82e-07)|all cancers(265;2.04e-05)|Lung(183;0.0525)|BRCA - Breast invasive adenocarcinoma(282;0.0695)|COAD - Colon adenocarcinoma(174;0.111)|LUSC - Lung squamous cell carcinoma(189;0.185)		CCCAGACAGGGAAGCTGCAGC	0.453000													13	33					0	0	1	0	0
SPAG17	200162	broad.mit.edu	37	1	118523950	118523950	+	Missense_Mutation	SNP	C	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr1:118523950C>A	uc001ehk.2	-	43	6015	c.5947G>T	c.(5947-5949)GAT>TAT	p.D1983Y		NM_206996	NP_996879	Q6Q759	SPG17_HUMAN	sperm associated antigen 17	1983						cilium|flagellar axoneme|microtubule				upper_aerodigestive_tract(2)|ovary(2)|large_intestine(1)|skin(1)	6	Esophageal squamous(2;0.0106)	all_cancers(81;0.0204)|all_lung(203;9.46e-05)|Lung NSC(69;0.000675)|all_epithelial(167;0.01)		Lung(183;0.0858)		TCCTTCTTATCTGCAGAAATC	0.358000													35	125					1.36161e-19	1.4221e-19	1	1	0
NOTCH2	4853	broad.mit.edu	37	1	120458064	120458064	+	Missense_Mutation	SNP	A	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr1:120458064A>C	uc001eik.2	-	34	7537	c.7281T>G	c.(7279-7281)AGT>AGG	p.S2427R		NM_024408	NP_077719	Q04721	NOTC2_HUMAN	notch 2 preproprotein	2427	Poly-Ser.|Cytoplasmic (Potential).				anti-apoptosis|bone remodeling|cell cycle arrest|cell fate determination|cell growth|hemopoiesis|induction of apoptosis|negative regulation of cell proliferation|nervous system development|Notch receptor processing|Notch signaling pathway|organ morphogenesis|positive regulation of Ras protein signal transduction|regulation of transcription, DNA-dependent|stem cell maintenance|transcription, DNA-dependent	cell surface|cytosol|endoplasmic reticulum lumen|extracellular region|Golgi lumen|integral to plasma membrane|nucleoplasm	calcium ion binding|ligand-regulated transcription factor activity|protein binding|receptor activity			lung(8)|haematopoietic_and_lymphoid_tissue(7)|ovary(4)|central_nervous_system(2)|skin(2)|kidney(2)|breast(1)|prostate(1)	27	all_neural(166;0.153)	all_lung(203;1.96e-06)|Lung NSC(69;1.47e-05)|all_epithelial(167;0.000809)		Lung(183;0.0242)|LUSC - Lung squamous cell carcinoma(189;0.133)		GGGGTGATGAACTTGACCACT	0.597000			N|F|Mis		marginal zone lymphoma|DLBCL				Alagille_Syndrome				23	106					0	0	1	0	0
LOC100286793	100286793	broad.mit.edu	37	1	143744470	143744470	+	RNA	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr1:143744470G>A	uc001ejp.3	-	1		c.118C>T			LOC100286793_uc001ejr.3_RNA|LOC100286793_uc009whx.2_RNA|LOC100286793_uc009why.2_RNA					Homo sapiens cDNA FLJ39739 fis, clone SMINT2016440.												0						ggaggaggtggaggaggaggg	0.428000													8	6					0	0	1	0	0
SEC22B	9554	broad.mit.edu	37	1	145115802	145115802	+	Missense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr1:145115802G>C	uc001eml.1	+	7	701	c.561G>C	c.(559-561)TTG>TTC	p.L187F	NBPF10_uc009wir.2_Intron|NBPF9_uc010oye.1_Intron|NBPF9_uc010oyf.1_Intron|NBPF9_uc010oyg.1_Intron	NM_004892	NP_004883	O75396	SC22B_HUMAN	SEC22 vesicle trafficking protein homolog B	187	v-SNARE coiled-coil homology.|Cytoplasmic (Potential).				ER to Golgi vesicle-mediated transport|protein transport	endoplasmic reticulum membrane|ER-Golgi intermediate compartment membrane|Golgi membrane|integral to membrane|melanosome	protein binding				0						CGAAGTACTTGAACATGCATT	0.378000													21	395					0	0	1	0	0
NBPF10	100132406	broad.mit.edu	37	1	145311859	145311859	+	Missense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr1:145311859C>G	uc001end.3	+	14	1962	c.1927C>G	c.(1927-1929)CCT>GCT	p.P643A	NBPF10_uc009wir.2_Intron|NBPF9_uc010oye.1_Intron|NBPF10_uc001emp.3_Intron|NBPF10_uc010oyi.1_Intron|NBPF10_uc010oyk.1_5'UTR|NBPF10_uc010oyl.1_5'UTR|NBPF10_uc010oyj.1_5'UTR	NM_001039703	NP_001034792	A6NDV3	A6NDV3_HUMAN	hypothetical protein LOC100132406	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment											0	all_hematologic(923;0.032)			Colorectal(1306;1.36e-07)|KIRC - Kidney renal clear cell carcinoma(1967;0.00258)		TTATTCAACTCCTTCAGGTTG	0.468000													19	124					0	0	1	0	0
TXNIP	10628	broad.mit.edu	37	1	145440941	145440941	+	Missense_Mutation	SNP	G	C	C	rs72563166	byFrequency	TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr1:145440941G>C	uc001enn.3	+	7	1369	c.1028G>C	c.(1027-1029)CGA>CCA	p.R343P	NBPF10_uc001emp.3_Intron|TXNIP_uc001enm.1_Intron|TXNIP_uc010oys.1_Missense_Mutation_p.R288P	NM_006472	NP_006463	Q9H3M7	TXNIP_HUMAN	thioredoxin interacting protein	343					cell cycle|keratinocyte differentiation|transcription, DNA-dependent		ubiquitin protein ligase binding			ovary(2)	2	all_hematologic(18;0.0187)|Acute lymphoblastic leukemia(18;0.0786)					GAAGATCACCGATTGGAGAGC	0.473000													49	279					0	0	1	0	0
PIAS3	10401	broad.mit.edu	37	1	145584227	145584227	+	Missense_Mutation	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr1:145584227G>A	uc001eoc.1	+	11	1469	c.1378G>A	c.(1378-1380)GAT>AAT	p.D460N	NBPF10_uc001emp.3_Intron|PIAS3_uc001eod.1_Missense_Mutation_p.D129N	NM_006099	NP_006090	Q9Y6X2	PIAS3_HUMAN	protein inhibitor of activated STAT, 3	460	SUMO1-binding (By similarity).				positive regulation of protein sumoylation|protein sumoylation|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nuclear speck	enzyme binding|nucleic acid binding|protein C-terminus binding|zinc ion binding			ovary(1)	1	all_hematologic(18;0.0187)|Acute lymphoblastic leukemia(18;0.0786)					AGATGAGGAGGATCTGCCCCC	0.507000													38	306					0	0	1	0	0
PDIA3P	171423	broad.mit.edu	37	1	146650173	146650173	+	Missense_Mutation	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr1:146650173G>A	uc001epg.1	+	1	744	c.481G>A	c.(481-483)GAT>AAT	p.D161N		NR_002305				SubName: Full=cDNA FLJ53558, highly similar to Protein disulfide-isomerase A3 (EC 5.3.4.1);												0						AGGTTTTTTCGATGATTCATT	0.438000													22	152					0	0	1	0	0
FMO5	2330	broad.mit.edu	37	1	146687380	146687380	+	Missense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr1:146687380C>G	uc001epi.2	-	3	657	c.268G>C	c.(268-270)GAG>CAG	p.E90Q	FMO5_uc001eph.3_Missense_Mutation_p.E90Q|FMO5_uc001epj.2_Missense_Mutation_p.E90Q|FMO5_uc001epk.3_Missense_Mutation_p.E90Q	NM_001461	NP_001452	P49326	FMO5_HUMAN	flavin containing monooxygenase 5 isoform 1	90						integral to membrane|intrinsic to endoplasmic reticulum membrane|microsome	flavin adenine dinucleotide binding|flavin-containing monooxygenase activity|NADP binding			ovary(3)	3	all_hematologic(923;0.0487)					CTGAAATACTCCAGGACCTGG	0.373000													31	186					0	0	1	0	0
BCL9	607	broad.mit.edu	37	1	147090719	147090719	+	Missense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr1:147090719G>C	uc001epq.2	+	8	1498	c.758G>C	c.(757-759)AGA>ACA	p.R253T	BCL9_uc010ozr.1_Missense_Mutation_p.R179T	NM_004326	NP_004317	O00512	BCL9_HUMAN	B-cell CLL/lymphoma 9	253	Pro-rich.				Wnt receptor signaling pathway	nucleus	protein binding			ovary(2)|large_intestine(2)|breast(1)|skin(1)	6	all_hematologic(923;0.115)					CAGAATACCAGACTGCAGCCA	0.582000			T	IGH@|IGL@	B-ALL								27	197					0	0	1	0	0
LOC645166	645166	broad.mit.edu	37	1	148932891	148932891	+	RNA	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr1:148932891C>T	uc010pbc.1	+	2		c.206C>T			LOC645166_uc010pbd.1_RNA|LOC645166_uc009wkw.1_RNA	NR_027355				Homo sapiens cDNA, FLJ18771.												0						GGTACAGGCTCAGTCTGCGGC	0.627000													10	401					0	0	1	0	0
LOC645166	645166	broad.mit.edu	37	1	148933305	148933305	+	RNA	SNP	A	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr1:148933305A>G	uc010pbc.1	+	3		c.250A>G			LOC645166_uc010pbd.1_Intron|LOC645166_uc009wkw.1_RNA	NR_027355				Homo sapiens cDNA, FLJ18771.												0						TTGTGGCTGGAGACATGAGCA	0.542000													6	17					0	0	1	0	0
HIST2H2AB	317772	broad.mit.edu	37	1	149859223	149859223	+	Missense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr1:149859223G>C	uc001ete.2	-	1	244	c.244C>G	c.(244-246)CGC>GGC	p.R82G	HIST2H2BE_uc001etc.2_5'Flank	NM_175065	NP_778235	Q8IUE6	H2A2B_HUMAN	histone cluster 2, H2ab	82					nucleosome assembly	nucleosome|nucleus	DNA binding			ovary(1)|breast(1)	2	Breast(34;0.0124)|all_hematologic(923;0.127)		STAD - Stomach adenocarcinoma(528;0.133)|LUSC - Lung squamous cell carcinoma(543;0.221)			TGCAGATGGCGAGGGATGATG	0.612000													25	179					0	0	1	0	0
VPS45	11311	broad.mit.edu	37	1	150082610	150082610	+	Splice_Site	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr1:150082610G>C	uc001etp.2	+	14	2067	c.1494_splice	c.e14-1	p.R498_splice	VPS45_uc010pbp.1_Splice_Site|VPS45_uc010pbq.1_Splice_Site_p.R462_splice|VPS45_uc010pbs.1_Splice_Site_p.R393_splice|VPS45_uc001etq.2_Splice_Site_p.R318_splice	NM_007259	NP_009190	Q9NRW7	VPS45_HUMAN	vacuolar protein sorting 45A						blood coagulation|intracellular protein transport|vesicle docking involved in exocytosis	endosome membrane|Golgi membrane|integral to membrane of membrane fraction				central_nervous_system(1)|skin(1)	2	Breast(34;0.00211)|Ovarian(49;0.0265)|all_hematologic(923;0.0597)|Hepatocellular(266;0.161)|Colorectal(459;0.171)		LUSC - Lung squamous cell carcinoma(543;0.171)			CATTATTGCAGACCTCAGGAT	0.368000													13	113					0	0	1	0	0
CA14	23632	broad.mit.edu	37	1	150234978	150234978	+	Missense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr1:150234978G>C	uc001etx.2	+	5	763	c.454G>C	c.(454-456)GAG>CAG	p.E152Q		NM_012113	NP_036245	Q9ULX7	CAH14_HUMAN	carbonic anhydrase XIV precursor	152	Extracellular (Potential).					integral to membrane	carbonate dehydratase activity|metal ion binding			ovary(1)	1	Lung NSC(24;7.29e-29)|Breast(34;0.00211)|Ovarian(49;0.0167)|all_hematologic(923;0.0597)|Hepatocellular(266;0.161)|Colorectal(459;0.171)		LUSC - Lung squamous cell carcinoma(543;0.171)			TGAGGCTGCTGAGAGGCCTCA	0.522000													47	190					0	0	1	0	0
TARS2	80222	broad.mit.edu	37	1	150463113	150463113	+	Missense_Mutation	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr1:150463113G>A	uc001euq.2	+	4	431	c.424G>A	c.(424-426)GCA>ACA	p.A142T	TARS2_uc010pcd.1_Intron|TARS2_uc001eur.2_Missense_Mutation_p.A142T|TARS2_uc009wlt.2_Intron|TARS2_uc009wls.2_Missense_Mutation_p.A142T	NM_025150	NP_079426	Q9BW92	SYTM_HUMAN	threonyl-tRNA synthetase 2, mitochondrial	142					threonyl-tRNA aminoacylation	mitochondrial matrix	ATP binding|threonine-tRNA ligase activity			ovary(1)	1	all_cancers(9;3.13e-53)|all_epithelial(9;3.74e-43)|all_lung(15;2.43e-34)|Lung NSC(24;8.86e-31)|Breast(34;0.000326)|Lung SC(34;0.00471)|Ovarian(49;0.0167)|all_hematologic(923;0.0395)|Hepatocellular(266;0.108)|Melanoma(130;0.128)|Colorectal(459;0.171)		UCEC - Uterine corpus endometrioid carcinoma (35;0.0757)|all cancers(9;1.51e-21)|BRCA - Breast invasive adenocarcinoma(12;0.000734)|LUSC - Lung squamous cell carcinoma(543;0.171)|STAD - Stomach adenocarcinoma(528;0.206)		L-Threonine(DB00156)	CCTGGGGGCAGCAGCTGAACA	0.478000													35	157					0	0	1	0	0
HORMAD1	84072	broad.mit.edu	37	1	150671183	150671183	+	Nonsense_Mutation	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr1:150671183G>A	uc001evk.1	-	15	1238	c.1132C>T	c.(1132-1134)CAA>TAA	p.Q378*	GOLPH3L_uc001evj.2_5'Flank|GOLPH3L_uc010pci.1_5'Flank|HORMAD1_uc001evl.1_Nonsense_Mutation_p.Q371*|HORMAD1_uc001evm.1_Nonsense_Mutation_p.Q298*	NM_032132	NP_115508	Q86X24	HORM1_HUMAN	HORMA domain containing 1	378					blastocyst development|cell differentiation|meiotic DNA double-strand break formation|meiotic recombination checkpoint|meiotic sister chromatid cohesion|mitosis|oogenesis|regulation of homologous chromosome segregation|spermatogenesis|synaptonemal complex assembly	chromosome|nucleus				ovary(2)|central_nervous_system(1)	3	all_cancers(9;3.23e-52)|all_epithelial(9;4.68e-43)|all_lung(15;5.74e-35)|Lung NSC(24;2.09e-31)|Breast(34;0.0009)|Lung SC(34;0.00471)|Ovarian(49;0.0167)|all_hematologic(923;0.0395)|Hepatocellular(266;0.108)|Melanoma(130;0.128)|Colorectal(459;0.171)		UCEC - Uterine corpus endometrioid carcinoma (35;0.0241)|Epithelial(6;2.32e-23)|all cancers(9;5.21e-23)|OV - Ovarian serous cystadenocarcinoma(6;6.72e-15)|BRCA - Breast invasive adenocarcinoma(12;0.000479)|LUSC - Lung squamous cell carcinoma(543;0.171)			ACTGACTCTTGACTAGAAGAA	0.323000													18	84					0	0	1	0	0
CTSS	1520	broad.mit.edu	37	1	150722644	150722644	+	Missense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr1:150722644G>C	uc001evn.2	-	6	764	c.631C>G	c.(631-633)CAG>GAG	p.Q211E	CTSS_uc010pcj.1_Missense_Mutation_p.Q161E|CTSS_uc001evo.1_Missense_Mutation_p.Q211E	NM_004079	NP_004070	P25774	CATS_HUMAN	cathepsin S preproprotein	211					immune response|proteolysis	extracellular region|lysosome	cysteine-type endopeptidase activity				0	all_cancers(9;6.17e-52)|all_epithelial(9;9.7e-43)|all_lung(15;5.74e-35)|Lung NSC(24;2.09e-31)|Breast(34;0.00146)|Lung SC(34;0.00471)|Ovarian(49;0.0167)|all_hematologic(923;0.0395)|Hepatocellular(266;0.108)|Melanoma(130;0.128)|Colorectal(459;0.171)		UCEC - Uterine corpus endometrioid carcinoma (35;0.0485)|Epithelial(6;5.02e-21)|all cancers(9;1.28e-20)|OV - Ovarian serous cystadenocarcinoma(6;1.09e-14)|BRCA - Breast invasive adenocarcinoma(12;0.00501)|LUSC - Lung squamous cell carcinoma(543;0.171)			TGACATTTCTGATCCTGCAAA	0.378000													6	72					0	0	1	0	0
PRUNE	58497	broad.mit.edu	37	1	150999800	150999800	+	Missense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr1:150999800G>C	uc001ewh.1	+	6	907	c.771G>C	c.(769-771)TTG>TTC	p.L257F	PRUNE_uc001ewi.1_Missense_Mutation_p.L75F|PRUNE_uc010pco.1_Missense_Mutation_p.L25F|PRUNE_uc001ewj.1_Missense_Mutation_p.L25F|PRUNE_uc001ewk.1_Missense_Mutation_p.L75F	NM_021222	NP_067045	Q86TP1	PRUNE_HUMAN	prune	257						cytoplasm|focal adhesion|nucleus	inorganic diphosphatase activity|manganese ion binding|protein binding			ovary(1)	1	all_lung(15;1.09e-34)|Lung NSC(24;1.1e-30)|Lung SC(34;0.00202)|Ovarian(49;0.0167)|all_hematologic(923;0.0597)|Hepatocellular(266;0.0997)|Melanoma(130;0.185)		UCEC - Uterine corpus endometrioid carcinoma (35;0.0486)|LUSC - Lung squamous cell carcinoma(543;0.211)			ATATGGATTTGGAGGTAAGAG	0.433000													8	50					0	0	1	0	0
VPS72	6944	broad.mit.edu	37	1	151158326	151158326	+	Missense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr1:151158326C>G	uc001exe.1	-	2	261	c.218G>C	c.(217-219)GGA>GCA	p.G73A	VPS72_uc001exf.1_Missense_Mutation_p.G73A	NM_005997	NP_005988	Q15906	VPS72_HUMAN	transcription factor-like 1	73	Asp/Glu-rich (acidic).				chromatin modification|negative regulation of transcription from RNA polymerase II promoter	nucleus|protein complex	DNA binding|sequence-specific DNA binding transcription factor activity			breast(1)|pancreas(1)	2	Lung SC(34;0.00471)|Ovarian(49;0.0147)|all_hematologic(923;0.0597)|Hepatocellular(266;0.0997)|Melanoma(130;0.185)		UCEC - Uterine corpus endometrioid carcinoma (35;0.0486)|LUSC - Lung squamous cell carcinoma(543;0.211)			TTCTGCTTCTCCATCACTGGA	0.493000													5	228					0	0	1	0	0
PIP5K1A	8394	broad.mit.edu	37	1	151204209	151204209	+	Silent	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr1:151204209G>C	uc001exj.2	+	5	752	c.300G>C	c.(298-300)CTG>CTC	p.L100L	PIP5K1A_uc001exi.2_Silent_p.L87L|PIP5K1A_uc010pcu.1_Silent_p.L88L|PIP5K1A_uc001exk.2_Silent_p.L87L|PIP5K1A_uc010pcv.1_5'Flank	NM_001135638	NP_001129110	Q99755	PI51A_HUMAN	phosphatidylinositol-4-phosphate 5-kinase, type	100	PIPK.				phospholipid biosynthetic process|signal transduction	endomembrane system|Golgi stack|lamellipodium|nuclear speck	1-phosphatidylinositol-4-phosphate 5-kinase activity|ATP binding|kinase binding			ovary(1)|central_nervous_system(1)|skin(1)	3	Lung SC(34;0.00471)|Ovarian(49;0.0147)|all_hematologic(923;0.0597)|Hepatocellular(266;0.0997)|Melanoma(130;0.185)		UCEC - Uterine corpus endometrioid carcinoma (35;0.0486)|LUSC - Lung squamous cell carcinoma(543;0.181)			TGGGGAGCCTGAGTACCAAAC	0.453000													20	186					0	0	1	0	0
PIP5K1A	8394	broad.mit.edu	37	1	151204259	151204259	+	Missense_Mutation	SNP	A	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr1:151204259A>C	uc001exj.2	+	5	802	c.350A>C	c.(349-351)GAG>GCG	p.E117A	PIP5K1A_uc001exi.2_Missense_Mutation_p.E104A|PIP5K1A_uc010pcu.1_Missense_Mutation_p.E105A|PIP5K1A_uc001exk.2_Missense_Mutation_p.E104A|PIP5K1A_uc010pcv.1_5'Flank	NM_001135638	NP_001129110	Q99755	PI51A_HUMAN	phosphatidylinositol-4-phosphate 5-kinase, type	117	PIPK.				phospholipid biosynthetic process|signal transduction	endomembrane system|Golgi stack|lamellipodium|nuclear speck	1-phosphatidylinositol-4-phosphate 5-kinase activity|ATP binding|kinase binding			ovary(1)|central_nervous_system(1)|skin(1)	3	Lung SC(34;0.00471)|Ovarian(49;0.0147)|all_hematologic(923;0.0597)|Hepatocellular(266;0.0997)|Melanoma(130;0.185)		UCEC - Uterine corpus endometrioid carcinoma (35;0.0486)|LUSC - Lung squamous cell carcinoma(543;0.181)			TACGTGGTTGAGAGTATCTTC	0.493000													17	195					0	0	1	0	0
PIP5K1A	8394	broad.mit.edu	37	1	151206945	151206945	+	Silent	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr1:151206945C>T	uc001exj.2	+	8	1364	c.912C>T	c.(910-912)CTC>CTT	p.L304L	PIP5K1A_uc001exi.2_Silent_p.L291L|PIP5K1A_uc010pcu.1_Silent_p.L292L|PIP5K1A_uc001exk.2_Silent_p.L291L|PIP5K1A_uc010pcv.1_Silent_p.L61L	NM_001135638	NP_001129110	Q99755	PI51A_HUMAN	phosphatidylinositol-4-phosphate 5-kinase, type	304	PIPK.				phospholipid biosynthetic process|signal transduction	endomembrane system|Golgi stack|lamellipodium|nuclear speck	1-phosphatidylinositol-4-phosphate 5-kinase activity|ATP binding|kinase binding			ovary(1)|central_nervous_system(1)|skin(1)	3	Lung SC(34;0.00471)|Ovarian(49;0.0147)|all_hematologic(923;0.0597)|Hepatocellular(266;0.0997)|Melanoma(130;0.185)		UCEC - Uterine corpus endometrioid carcinoma (35;0.0486)|LUSC - Lung squamous cell carcinoma(543;0.181)			ACAACGCTCTCTGTAAGACCC	0.403000													30	163					0	0	1	0	0
ZNF687	57592	broad.mit.edu	37	1	151262918	151262918	+	Missense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr1:151262918G>C	uc001exq.2	+	8	3186	c.3088G>C	c.(3088-3090)GAG>CAG	p.E1030Q	ZNF687_uc009wmo.2_Missense_Mutation_p.E1030Q|ZNF687_uc009wmp.2_Missense_Mutation_p.R1050T	NM_020832	NP_065883	Q8N1G0	ZN687_HUMAN	zinc finger protein 687	1030					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleolus	DNA binding|zinc ion binding			central_nervous_system(3)|ovary(1)	4	Lung SC(34;0.00471)|Ovarian(49;0.0147)|Hepatocellular(266;0.0997)|all_hematologic(923;0.127)|Melanoma(130;0.185)		UCEC - Uterine corpus endometrioid carcinoma (35;0.112)|LUSC - Lung squamous cell carcinoma(543;0.181)			GTATTGCACAGAGGGAAAACG	0.642000													35	136					0	0	1	0	0
TDRKH	11022	broad.mit.edu	37	1	151747576	151747576	+	Missense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr1:151747576C>G	uc009wnb.1	-	11	1683	c.1501G>C	c.(1501-1503)GAA>CAA	p.E501Q	TDRKH_uc001eyy.2_Missense_Mutation_p.E277Q|TDRKH_uc001ezb.3_Missense_Mutation_p.E497Q|TDRKH_uc001ezc.3_Missense_Mutation_p.E456Q|TDRKH_uc001eza.3_Missense_Mutation_p.E501Q|TDRKH_uc001ezd.3_Missense_Mutation_p.E501Q|TDRKH_uc010pdn.1_Missense_Mutation_p.E277Q	NM_006862	NP_006853	Q9Y2W6	TDRKH_HUMAN	tudor and KH domain containing isoform a	501							RNA binding			ovary(1)|pancreas(1)	2	Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.14)		LUSC - Lung squamous cell carcinoma(543;0.181)			GCTCTGTTTTCTTCTATGTCT	0.408000													15	152					0	0	1	0	0
TDRKH	11022	broad.mit.edu	37	1	151751239	151751239	+	Missense_Mutation	SNP	C	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr1:151751239C>A	uc009wnb.1	-	6	987	c.805G>T	c.(805-807)GGT>TGT	p.G269C	TDRKH_uc001eyy.2_Missense_Mutation_p.G45C|TDRKH_uc001ezb.3_Missense_Mutation_p.G265C|TDRKH_uc001ezc.3_Missense_Mutation_p.G224C|TDRKH_uc001eza.3_Missense_Mutation_p.G269C|TDRKH_uc001ezd.3_Missense_Mutation_p.G269C|TDRKH_uc010pdn.1_Missense_Mutation_p.G45C	NM_006862	NP_006853	Q9Y2W6	TDRKH_HUMAN	tudor and KH domain containing isoform a	269							RNA binding			ovary(1)|pancreas(1)	2	Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.14)		LUSC - Lung squamous cell carcinoma(543;0.181)			TCCCAGGAACCTTCCTTTGAC	0.517000													6	168					0.00307968	0.00310822	1	1	0
LINGO4	339398	broad.mit.edu	37	1	151773455	151773455	+	Missense_Mutation	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr1:151773455G>A	uc001ezf.1	-	2	1916	c.1726C>T	c.(1726-1728)CGG>TGG	p.R576W		NM_001004432	NP_001004432	Q6UY18	LIGO4_HUMAN	leucine rich repeat and Ig domain containing 4	576	Cytoplasmic (Potential).					integral to membrane				large_intestine(1)	1	Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.14)		LUSC - Lung squamous cell carcinoma(543;0.181)			CCAGAGGGCCGAGGTGCCACA	0.552000													17	302					0	0	1	0	0
THEM5	284486	broad.mit.edu	37	1	151824759	151824759	+	Silent	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr1:151824759G>C	uc009wnd.2	-	2	432	c.300C>G	c.(298-300)CTC>CTG	p.L100L		NM_182578	NP_872384	Q8N1Q8	THEM5_HUMAN	thioesterase superfamily member 5	100							hydrolase activity			ovary(1)|skin(1)	2	Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.14)		LUSC - Lung squamous cell carcinoma(543;0.181)			GTCCAGATGGGAGCTTGAGTC	0.532000													3	225					0	0	1	0	0
TCHH	7062	broad.mit.edu	37	1	152079913	152079913	+	Missense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr1:152079913G>C	uc001ezp.2	-	2	5780	c.5780C>G	c.(5779-5781)TCC>TGC	p.S1927C	TCHH_uc009wne.1_Missense_Mutation_p.S1927C	NM_007113	NP_009044	Q07283	TRHY_HUMAN	trichohyalin	1927					keratinization	cytoskeleton	calcium ion binding			ovary(3)|kidney(1)|central_nervous_system(1)	5	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			GAGAGGGCTGGAGCGCACTGG	0.552000													5	312					0	0	1	0	0
HRNR	388697	broad.mit.edu	37	1	152191898	152191898	+	Missense_Mutation	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr1:152191898G>A	uc001ezt.1	-	3	2283	c.2207C>T	c.(2206-2208)TCA>TTA	p.S736L		NM_001009931	NP_001009931	Q86YZ3	HORN_HUMAN	hornerin	736	7.				keratinization		calcium ion binding|protein binding			skin(2)|ovary(1)	3	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			ACTCCTAGATGACTGTCCTGA	0.557000													56	293					0	0	1	0	0
HRNR	388697	broad.mit.edu	37	1	152192471	152192471	+	Missense_Mutation	SNP	C	T	T	rs146592977	byFrequency	TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr1:152192471C>T	uc001ezt.1	-	3	1710	c.1634G>A	c.(1633-1635)CGT>CAT	p.R545H		NM_001009931	NP_001009931	Q86YZ3	HORN_HUMAN	hornerin	545	5.				keratinization		calcium ion binding|protein binding			skin(2)|ovary(1)	3	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			ATGTCGGCCACGGCTAGGGCT	0.587000													50	328					0	0	1	0	0
FLG2	388698	broad.mit.edu	37	1	152324967	152324967	+	Missense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr1:152324967C>G	uc001ezw.3	-	3	5368	c.5295G>C	c.(5293-5295)GAG>GAC	p.E1765D	uc001ezv.2_Intron	NM_001014342	NP_001014364	Q5D862	FILA2_HUMAN	filaggrin family member 2	1765	Filaggrin 7.						calcium ion binding|structural molecule activity			ovary(10)|skin(5)|upper_aerodigestive_tract(1)|breast(1)	17	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			TTCCATGTCTCTCATGAACTA	0.502000													6	499					0	0	1	0	0
FLG2	388698	broad.mit.edu	37	1	152326351	152326351	+	Missense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr1:152326351C>G	uc001ezw.3	-	3	3984	c.3911G>C	c.(3910-3912)GGA>GCA	p.G1304A	uc001ezv.2_Intron	NM_001014342	NP_001014364	Q5D862	FILA2_HUMAN	filaggrin family member 2	1304							calcium ion binding|structural molecule activity			ovary(10)|skin(5)|upper_aerodigestive_tract(1)|breast(1)	17	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			AACTGTGGATCCTGACTTTGG	0.478000													7	653					0	0	1	0	0
FLG2	388698	broad.mit.edu	37	1	152329907	152329907	+	Missense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr1:152329907C>G	uc001ezw.3	-	3	428	c.355G>C	c.(355-357)GAA>CAA	p.E119Q	uc001ezv.2_Intron	NM_001014342	NP_001014364	Q5D862	FILA2_HUMAN	filaggrin family member 2	119							calcium ion binding|structural molecule activity			ovary(10)|skin(5)|upper_aerodigestive_tract(1)|breast(1)	17	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			GTATCCTCTTCATCCTCTTCT	0.463000													55	219					0	0	1	0	0
CRNN	49860	broad.mit.edu	37	1	152382129	152382129	+	Nonsense_Mutation	SNP	C	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr1:152382129C>A	uc001ezx.2	-	3	1503	c.1429G>T	c.(1429-1431)GAG>TAG	p.E477*		NM_016190	NP_057274	Q9UBG3	CRNN_HUMAN	cornulin	477					cell-cell adhesion|response to heat	cytoplasm|membrane	calcium ion binding			ovary(2)|skin(1)	3	Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.242)		LUSC - Lung squamous cell carcinoma(543;0.206)			CCTCGCTTCTCTTCTGACTGG	0.537000													26	115					2.79863e-10	2.88222e-10	1	1	0
LCE1B	353132	broad.mit.edu	37	1	152785089	152785089	+	Missense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr1:152785089C>G	uc001faq.2	+	1	643	c.167C>G	c.(166-168)TCT>TGT	p.S56C		NM_178349	NP_848126	Q5T7P3	LCE1B_HUMAN	late cornified envelope 1B	56	Gly-rich.				keratinization						0	Lung NSC(65;9.06e-30)|Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.242)		LUSC - Lung squamous cell carcinoma(543;0.171)			GGCTCCAGCTCTGGGGGAAGC	0.622000													37	154					0	0	1	0	0
SMCP	4184	broad.mit.edu	37	1	152857023	152857023	+	Missense_Mutation	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr1:152857023G>A	uc001fat.2	+	2	270	c.125G>A	c.(124-126)TGC>TAC	p.C42Y		NM_030663	NP_109588	P49901	MCSP_HUMAN	sperm mitochondria-associated cysteine-rich	42	4.|7 X 7 (OR 8) AA approximate repeats.				penetration of zona pellucida|sperm motility	mitochondrial membrane					0	Lung NSC(65;3.97e-29)|Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.242)		LUSC - Lung squamous cell carcinoma(543;0.171)			CAGAACCAGTGCTGCCAGCCA	0.537000													53	213					0	0	1	0	0
S100A7A	338324	broad.mit.edu	37	1	153390597	153390597	+	Missense_Mutation	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr1:153390597G>A	uc001fbt.1	+	2	96	c.39G>A	c.(37-39)ATG>ATA	p.M13I		NM_176823	NP_789793	Q86SG5	S1A7A_HUMAN	S100 calcium binding protein A7-like 1	13	EF-hand 1.					cytoplasm	calcium ion binding			skin(1)	1	all_lung(78;2.81e-33)|Lung NSC(65;9.54e-32)|Hepatocellular(266;0.0877)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.171)			TAATAGGCATGATCGACATGT	0.418000													27	272					0	0	1	0	0
INTS3	65123	broad.mit.edu	37	1	153713820	153713820	+	Silent	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr1:153713820C>T	uc009wom.2	+	4	515	c.294C>T	c.(292-294)CTC>CTT	p.L98L	INTS3_uc001fct.2_Silent_p.L98L|INTS3_uc001fcu.2_5'UTR|INTS3_uc001fcv.2_5'UTR	NM_023015	NP_075391	Q68E01	INT3_HUMAN	integrator complex subunit 3	98					DNA repair|G2/M transition checkpoint|response to ionizing radiation|snRNA processing	integrator complex|SOSS complex	protein binding			ovary(2)|upper_aerodigestive_tract(1)	3	all_lung(78;3.75e-32)|Lung NSC(65;1.37e-30)|Hepatocellular(266;0.0877)|Melanoma(130;0.199)		LUSC - Lung squamous cell carcinoma(543;0.151)			CTCTCATCCTCACTGAACCTG	0.488000													5	280					0	0	1	0	0
INTS3	65123	broad.mit.edu	37	1	153742319	153742319	+	Silent	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr1:153742319C>G	uc009wom.2	+	24	2609	c.2388C>G	c.(2386-2388)CTC>CTG	p.L796L	INTS3_uc001fct.2_Silent_p.L796L|INTS3_uc001fcu.2_Silent_p.L488L|INTS3_uc001fcv.2_Silent_p.L590L|INTS3_uc010peb.1_Silent_p.L590L|INTS3_uc001fcw.2_Silent_p.L309L|INTS3_uc010pec.1_Silent_p.L309L|INTS3_uc001fcy.2_Silent_p.L93L|INTS3_uc001fcx.2_Silent_p.L93L	NM_023015	NP_075391	Q68E01	INT3_HUMAN	integrator complex subunit 3	797					DNA repair|G2/M transition checkpoint|response to ionizing radiation|snRNA processing	integrator complex|SOSS complex	protein binding			ovary(2)|upper_aerodigestive_tract(1)	3	all_lung(78;3.75e-32)|Lung NSC(65;1.37e-30)|Hepatocellular(266;0.0877)|Melanoma(130;0.199)		LUSC - Lung squamous cell carcinoma(543;0.151)			TCAACATACTCAGTAAGTGAT	0.507000													14	80					0	0	1	0	0
CRTC2	200186	broad.mit.edu	37	1	153930904	153930904	+	Missense_Mutation	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr1:153930904C>T	uc010ped.1	-	1	140	c.70G>A	c.(70-72)GAG>AAG	p.E24K		NM_181715	NP_859066	Q53ET0	CRTC2_HUMAN	CREB regulated transcription coactivator 2	24					interspecies interaction between organisms|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	protein binding			ovary(2)	2	all_lung(78;3.05e-32)|Lung NSC(65;3.74e-30)|Hepatocellular(266;0.0877)|Melanoma(130;0.199)		LUSC - Lung squamous cell carcinoma(543;0.151)			GCAATCTTCTCACTAAATTTG	0.677000													8	45					0	0	1	0	0
NUP210L	91181	broad.mit.edu	37	1	154000067	154000067	+	Missense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr1:154000067C>G	uc001fdw.2	-	29	3934	c.3862G>C	c.(3862-3864)GAA>CAA	p.E1288Q	NUP210L_uc009woq.2_Missense_Mutation_p.E197Q|NUP210L_uc010peh.1_Missense_Mutation_p.E1288Q	NM_207308	NP_997191	Q5VU65	P210L_HUMAN	nucleoporin 210kDa-like isoform 1	1288						integral to membrane				skin(5)|ovary(4)|large_intestine(1)|central_nervous_system(1)	11	all_lung(78;9.35e-31)|Lung NSC(65;1.33e-28)|Hepatocellular(266;0.0877)|Melanoma(130;0.128)		LUSC - Lung squamous cell carcinoma(543;0.151)|Colorectal(543;0.198)			TGGAGTTTTTCAAACACCTAT	0.363000													47	55					0	0	1	0	0
C1orf43	25912	broad.mit.edu	37	1	154187021	154187021	+	Silent	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr1:154187021G>C	uc001fei.2	-	3	588	c.198C>G	c.(196-198)CTC>CTG	p.L66L	C1orf43_uc001fef.1_5'Flank|C1orf43_uc001feg.2_Silent_p.L32L|C1orf43_uc001feh.2_Silent_p.L32L|C1orf43_uc001fej.2_Silent_p.L66L|C1orf43_uc009wos.1_Silent_p.L66L|C1orf43_uc001fek.2_Silent_p.L66L|C1orf43_uc001fel.2_Silent_p.L32L	NM_001098616	NP_001092086	Q9BWL3	CA043_HUMAN	hypothetical protein LOC25912 isoform 3	66						integral to membrane	coenzyme binding|oxidoreductase activity				0	all_lung(78;1.98e-30)|Lung NSC(65;2.87e-28)|Hepatocellular(266;0.0877)					GAACCCTGGAGAGTCGAATAT	0.433000													19	179					0	0	1	0	0
CHRNB2	1141	broad.mit.edu	37	1	154543731	154543731	+	Silent	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr1:154543731C>T	uc001ffg.2	+	5	696	c.432C>T	c.(430-432)TTC>TTT	p.F144F		NM_000748	NP_000739	P17787	ACHB2_HUMAN	neuronal nicotinic acetylcholine receptor beta 2	144	Extracellular (Potential).				B cell activation|behavioral response to nicotine|calcium ion transport|central nervous system projection neuron axonogenesis|lateral geniculate nucleus development|locomotory behavior|membrane depolarization|memory|negative regulation of action potential|optic nerve morphogenesis|positive regulation of B cell proliferation|positive regulation of dopamine secretion|regulation of circadian sleep/wake cycle, REM sleep|regulation of dendrite morphogenesis|regulation of dopamine metabolic process|regulation of synaptogenesis|response to cocaine|response to ethanol|response to hypoxia|sensory perception of pain|sensory perception of sound|smooth muscle contraction|social behavior|synaptic transmission involved in micturition|synaptic transmission, cholinergic|vestibulocochlear nerve development|visual learning|visual perception	cell junction|external side of plasma membrane|nicotinic acetylcholine-gated receptor-channel complex|postsynaptic membrane	acetylcholine receptor activity|nicotinic acetylcholine-activated cation-selective channel activity				0	all_lung(78;2.22e-29)|Lung NSC(65;3.66e-27)|Hepatocellular(266;0.0877)|all_hematologic(923;0.088)		LUSC - Lung squamous cell carcinoma(543;0.185)		Nicotine(DB00184)	GCAGCATCTTCTGGCTGCCGC	0.537000													38	190					0	0	1	0	0
KCNN3	3782	broad.mit.edu	37	1	154744507	154744507	+	Silent	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr1:154744507G>A	uc001ffp.2	-	3	1706	c.1392C>T	c.(1390-1392)CTC>CTT	p.L464L	KCNN3_uc001ffo.2_Silent_p.L159L|KCNN3_uc009wox.1_Silent_p.L464L	NM_002249	NP_002240	Q9UGI6	KCNN3_HUMAN	small conductance calcium-activated potassium	469	Helical; Name=Segment S5; (Potential).					integral to membrane	calmodulin binding			lung(1)	1	all_lung(78;2.29e-27)|all_hematologic(923;0.088)|Hepatocellular(266;0.108)|all_neural(408;0.245)		BRCA - Breast invasive adenocarcinoma(34;0.00819)			TGCTGAACACGAGCAGCACAG	0.557000													36	160					0	0	1	0	0
ADAM15	8751	broad.mit.edu	37	1	155028694	155028694	+	Missense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr1:155028694C>G	uc001fgr.1	+	9	984	c.883C>G	c.(883-885)CGA>GGA	p.R295G	ADAM15_uc001fgq.1_5'UTR|ADAM15_uc009wpc.1_RNA|ADAM15_uc010pet.1_Missense_Mutation_p.R279G|ADAM15_uc010peu.1_Missense_Mutation_p.R312G|ADAM15_uc001fgt.1_Missense_Mutation_p.R295G|ADAM15_uc010pev.1_Missense_Mutation_p.R305G|ADAM15_uc001fgs.1_Missense_Mutation_p.R295G|ADAM15_uc001fgu.1_Missense_Mutation_p.R295G|ADAM15_uc001fgw.1_Missense_Mutation_p.R295G|ADAM15_uc001fgv.1_Missense_Mutation_p.R295G|ADAM15_uc001fgx.1_Missense_Mutation_p.R295G|ADAM15_uc001fgz.1_RNA|ADAM15_uc001fgy.1_RNA|ADAM15_uc001fha.1_RNA|ADAM15_uc001fhb.1_5'Flank	NM_207197	NP_997080	Q13444	ADA15_HUMAN	a disintegrin and metalloproteinase domain 15	295	Peptidase M12B.|Extracellular (Potential).				angiogenesis|cell-matrix adhesion|collagen catabolic process|proteolysis	acrosomal vesicle|adherens junction|endomembrane system|flagellum|integral to membrane	metalloendopeptidase activity|SH3 domain binding|zinc ion binding			central_nervous_system(3)|skin(2)|ovary(1)	6	all_epithelial(22;1.43e-30)|all_lung(78;6.64e-28)|all_hematologic(923;0.0359)|Hepatocellular(266;0.0877)		BRCA - Breast invasive adenocarcinoma(34;0.000434)			TTTGCTGCCTCGATTGCCCCA	0.617000													16	87					0	0	1	0	0
DAP3	7818	broad.mit.edu	37	1	155695199	155695199	+	Silent	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr1:155695199G>C	uc001flq.2	+	5	466	c.297G>C	c.(295-297)CTG>CTC	p.L99L	DAP3_uc001flr.2_Silent_p.L99L|DAP3_uc001fls.2_Silent_p.L99L|DAP3_uc010pgl.1_Silent_p.L58L|DAP3_uc001flt.2_Silent_p.L65L|DAP3_uc001flu.2_Silent_p.L99L|DAP3_uc010pgm.1_Silent_p.L65L	NM_033657	NP_387506	P51398	RT29_HUMAN	death-associated protein 3	99					induction of apoptosis by extracellular signals	mitochondrial ribosome|nucleolus|small ribosomal subunit	protein binding			ovary(1)	1	Hepatocellular(266;0.0997)|all_hematologic(923;0.145)					AAGCTTGCCTGATGGTAAGGA	0.463000													115	134					0	0	1	0	0
GON4L	54856	broad.mit.edu	37	1	155735069	155735069	+	Missense_Mutation	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr1:155735069C>T	uc001flz.2	-	21	4292	c.4195G>A	c.(4195-4197)GAA>AAA	p.E1399K	GON4L_uc009wrg.1_RNA|GON4L_uc001fly.1_Missense_Mutation_p.E1399K|GON4L_uc009wrh.1_Missense_Mutation_p.E1399K|GON4L_uc001fma.1_Missense_Mutation_p.E1399K|GON4L_uc001fmb.3_Missense_Mutation_p.E595K|GON4L_uc001fmc.2_Missense_Mutation_p.E1399K|GON4L_uc001fmd.3_Missense_Mutation_p.E1399K|GON4L_uc009wri.2_Missense_Mutation_p.E985K	NM_001037533	NP_001032622	Q3T8J9	GON4L_HUMAN	gon-4-like isoform a	1399					regulation of transcription, DNA-dependent	cytoplasm|nucleus	DNA binding			ovary(3)	3	Hepatocellular(266;0.0997)|all_hematologic(923;0.145)|all_neural(408;0.195)					GAGGTTCCTTCATCAGGGGGC	0.493000													34	177					0	0	1	0	0
ARHGEF2	9181	broad.mit.edu	37	1	155932738	155932738	+	Missense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr1:155932738G>C	uc001fmt.2	-	8	1079	c.961C>G	c.(961-963)CTG>GTG	p.L321V	ARHGEF2_uc001fmr.2_Missense_Mutation_p.L293V|ARHGEF2_uc001fms.2_Missense_Mutation_p.L320V|ARHGEF2_uc001fmu.2_Missense_Mutation_p.L365V|ARHGEF2_uc010pgt.1_Missense_Mutation_p.L294V|ARHGEF2_uc010pgu.1_Missense_Mutation_p.L366V	NM_001162383	NP_001155855	Q92974	ARHG2_HUMAN	Rho/Rac guanine nucleotide exchange factor 2	321	DH.				actin filament organization|apoptosis|cell division|cell morphogenesis|induction of apoptosis by extracellular signals|intracellular protein transport|mitosis|negative regulation of microtubule depolymerization|nerve growth factor receptor signaling pathway|positive regulation of NF-kappaB transcription factor activity|regulation of cell proliferation|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|Golgi apparatus|microtubule|ruffle membrane|spindle|tight junction	microtubule binding|Rac GTPase binding|Rac guanyl-nucleotide exchange factor activity|zinc ion binding			ovary(1)	1	Hepatocellular(266;0.133)|all_hematologic(923;0.145)|all_neural(408;0.195)					CTGATGAGCAGATCACCCAAG	0.562000													31	150					0	0	1	0	0
ARHGEF2	9181	broad.mit.edu	37	1	155934786	155934786	+	Silent	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr1:155934786G>A	uc001fmt.2	-	7	835	c.717C>T	c.(715-717)GTC>GTT	p.V239V	ARHGEF2_uc001fmr.2_Silent_p.V211V|ARHGEF2_uc001fms.2_Silent_p.V238V|ARHGEF2_uc001fmu.2_Silent_p.V283V|ARHGEF2_uc010pgt.1_Silent_p.V212V|ARHGEF2_uc010pgu.1_Silent_p.V284V	NM_001162383	NP_001155855	Q92974	ARHG2_HUMAN	Rho/Rac guanine nucleotide exchange factor 2	239	DH.				actin filament organization|apoptosis|cell division|cell morphogenesis|induction of apoptosis by extracellular signals|intracellular protein transport|mitosis|negative regulation of microtubule depolymerization|nerve growth factor receptor signaling pathway|positive regulation of NF-kappaB transcription factor activity|regulation of cell proliferation|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|Golgi apparatus|microtubule|ruffle membrane|spindle|tight junction	microtubule binding|Rac GTPase binding|Rac guanyl-nucleotide exchange factor activity|zinc ion binding			ovary(1)	1	Hepatocellular(266;0.133)|all_hematologic(923;0.145)|all_neural(408;0.195)					TACCATAGATGACATCTTGCT	0.408000													23	141					0	0	1	0	0
SSR2	6746	broad.mit.edu	37	1	155988144	155988144	+	Silent	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr1:155988144C>T	uc001fmx.2	-	3	251	c.171G>A	c.(169-171)GTG>GTA	p.V57V	SSR2_uc001fmw.2_RNA|SSR2_uc001fmy.2_RNA|SSR2_uc010pgv.1_Silent_p.V76V|SSR2_uc010pgw.1_Silent_p.V76V	NM_003145	NP_003136	P43308	SSRB_HUMAN	signal sequence receptor, beta precursor	57	Lumenal (Potential).				cotranslational protein targeting to membrane	endoplasmic reticulum membrane|integral to membrane	signal sequence binding				0	Hepatocellular(266;0.133)|all_hematologic(923;0.145)|all_neural(408;0.195)					CAGATAGTTCCACGTCTAATG	0.353000													16	70					0	0	1	0	0
UBQLN4	56893	broad.mit.edu	37	1	156020186	156020186	+	Missense_Mutation	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr1:156020186C>T	uc001fna.2	-	4	661	c.637G>A	c.(637-639)GAT>AAT	p.D213N	UBQLN4_uc010pgx.1_Missense_Mutation_p.D193N	NM_020131	NP_064516	Q9NRR5	UBQL4_HUMAN	ataxin-1 ubiquitin-like interacting protein	213						cytosol|endoplasmic reticulum membrane|nucleus	identical protein binding			pancreas(1)|skin(1)	2	Hepatocellular(266;0.133)|all_neural(408;0.195)					CGCATCAGATCAGGGTTAGAC	0.532000													41	323					0	0	1	0	0
ROBLD3	28956	broad.mit.edu	37	1	156028130	156028130	+	Missense_Mutation	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr1:156028130G>A	uc001fnb.3	+	4	510	c.346G>A	c.(346-348)GAG>AAG	p.E116K	ROBLD3_uc010pgy.1_Missense_Mutation_p.E86K|RAB25_uc001fnc.2_5'Flank	NM_014017	NP_054736	Q9Y2Q5	LTOR2_HUMAN	roadblock domain-containing protein 3 isoform 1	116					cell growth|cellular protein localization|cellular response to amino acid stimulus|positive regulation of TOR signaling cascade	lysosomal membrane|Ragulator complex					0						GCAGTACCTGGAGGAGCCCCT	0.587000													5	334					0	0	1	0	0
SEMA4A	64218	broad.mit.edu	37	1	156131286	156131286	+	Missense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr1:156131286C>G	uc001fnl.2	+	9	1064	c.960C>G	c.(958-960)ATC>ATG	p.I320M	SEMA4A_uc009wrq.2_Missense_Mutation_p.I320M|SEMA4A_uc001fnm.2_Missense_Mutation_p.I320M|SEMA4A_uc001fnn.2_Missense_Mutation_p.I188M|SEMA4A_uc001fno.2_Missense_Mutation_p.I320M	NM_022367	NP_071762	Q9H3S1	SEM4A_HUMAN	semaphorin B precursor	320	Sema.|Extracellular (Potential).			CTQPGQLPFNVIRHAVLLPADSPTAPHIYAVFTSQW -> S APSRGSCPSTSSATRSCSPPILPQLPTSTQSSPPSG (in Ref. 1).	axon guidance	integral to membrane|plasma membrane	receptor activity			ovary(1)|skin(1)	2	Hepatocellular(266;0.158)					CTCCCCACATCTACGCAGTCT	0.672000													14	104					0	0	1	0	0
BCAN	63827	broad.mit.edu	37	1	156622655	156622655	+	Missense_Mutation	SNP	G	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr1:156622655G>T	uc001fpp.2	+	8	2249	c.1913G>T	c.(1912-1914)CGA>CTA	p.R638L	BCAN_uc001fpo.2_Missense_Mutation_p.R638L	NM_021948	NP_068767	Q96GW7	PGCB_HUMAN	brevican isoform 1	638					cell adhesion	anchored to membrane|proteinaceous extracellular matrix	hyaluronic acid binding|sugar binding			ovary(1)|pancreas(1)	2	all_hematologic(923;0.088)|Hepatocellular(266;0.158)					AGCGCCAGCCGAGGTGGAGTG	0.617000													24	164					1.17739e-12	1.22168e-12	1	1	0
FCRL2	79368	broad.mit.edu	37	1	157737271	157737271	+	Silent	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr1:157737271G>C	uc001fre.2	-	6	971	c.912C>G	c.(910-912)CTC>CTG	p.L304L	FCRL2_uc001frd.2_Silent_p.L51L|FCRL2_uc010phz.1_Silent_p.L304L|FCRL2_uc009wsp.2_Intron	NM_030764	NP_110391	Q96LA5	FCRL2_HUMAN	Fc receptor-like 2 precursor	304	Ig-like C2-type 4.|Extracellular (Potential).				cell-cell signaling	integral to membrane|plasma membrane|soluble fraction	receptor activity|SH3/SH2 adaptor activity			ovary(1)|pancreas(1)	2	all_hematologic(112;0.0378)		LUSC - Lung squamous cell carcinoma(543;0.24)			CAGGAGACCTGAGGGTGAGGA	0.547000													6	116					0	0	1	0	0
KIRREL	55243	broad.mit.edu	37	1	158063415	158063415	+	Missense_Mutation	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr1:158063415C>T	uc001frn.3	+	13	1986	c.1582C>T	c.(1582-1584)CGC>TGC	p.R528C	KIRREL_uc010pib.1_Missense_Mutation_p.R428C|KIRREL_uc009wsq.2_Missense_Mutation_p.R364C|KIRREL_uc001fro.3_Missense_Mutation_p.R342C|uc001frp.2_5'Flank	NM_018240	NP_060710	Q96J84	KIRR1_HUMAN	kin of IRRE like precursor	528	Cytoplasmic (Potential).					integral to membrane				ovary(1)	1	all_hematologic(112;0.0378)					CGTCCCAGGTCGCAAAGACGT	0.607000													12	61					0	0	1	0	0
OR10K2	391107	broad.mit.edu	37	1	158390018	158390018	+	Missense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr1:158390018C>G	uc010pii.1	-	1	639	c.639G>C	c.(637-639)TTG>TTC	p.L213F		NM_001004476	NP_001004476	Q6IF99	O10K2_HUMAN	olfactory receptor, family 10, subfamily K,	213	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			pancreas(1)	1	all_hematologic(112;0.0378)					ACACCAAGATCAACAATAAGG	0.448000													18	142					0	0	1	0	0
OR10K2	391107	broad.mit.edu	37	1	158390317	158390317	+	Silent	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr1:158390317G>A	uc010pii.1	-	1	340	c.340C>T	c.(340-342)CTG>TTG	p.L114L		NM_001004476	NP_001004476	Q6IF99	O10K2_HUMAN	olfactory receptor, family 10, subfamily K,	114	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			pancreas(1)	1	all_hematologic(112;0.0378)					ACTGCCAGCAGAAAGGAGTGA	0.512000													49	234					0	0	1	0	0
OR10X1	128367	broad.mit.edu	37	1	158549183	158549183	+	Silent	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr1:158549183G>A	uc010pin.1	-	1	507	c.507C>T	c.(505-507)TTC>TTT	p.F169F		NM_001004477	NP_001004477	Q8NGY0	O10X1_HUMAN	olfactory receptor, family 10, subfamily X,	169	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1	all_hematologic(112;0.0378)					GAGAGATAAAGAAGCCTGCAG	0.468000													21	77					0	0	1	0	0
SPTA1	6708	broad.mit.edu	37	1	158641920	158641920	+	Missense_Mutation	SNP	C	G	G	rs140555949	by1000genomes	TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr1:158641920C>G	uc001fst.1	-	11	1616	c.1417G>C	c.(1417-1419)GAG>CAG	p.E473Q		NM_003126	NP_003117	P02549	SPTA1_HUMAN	spectrin, alpha, erythrocytic 1	473	Spectrin 5.				actin filament capping|actin filament organization|axon guidance|regulation of cell shape	cytosol|intrinsic to internal side of plasma membrane|spectrin|spectrin-associated cytoskeleton	actin filament binding|calcium ion binding|structural constituent of cytoskeleton			ovary(4)|skin(2)|upper_aerodigestive_tract(1)|breast(1)	8	all_hematologic(112;0.0378)					AAGCACTGCTCATACTGACGA	0.468000													20	129					0	0	1	0	0
OR6K2	81448	broad.mit.edu	37	1	158669694	158669694	+	Missense_Mutation	SNP	G	A	A	rs144883209	byFrequency	TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr1:158669694G>A	uc001fsu.1	-	1	749	c.749C>T	c.(748-750)TCG>TTG	p.S250L		NM_001005279	NP_001005279	Q8NGY2	OR6K2_HUMAN	olfactory receptor, family 6, subfamily K,	250	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			pancreas(1)	1	all_hematologic(112;0.0378)					AAAGAAGAGCGAAAAGACAAT	0.473000													41	43					0	0	1	0	0
DARC	2532	broad.mit.edu	37	1	159175481	159175481	+	Missense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr1:159175481C>G	uc001fto.2	+	2	492	c.252C>G	c.(250-252)TTC>TTG	p.F84L	DARC_uc001ftp.3_Missense_Mutation_p.F86L	NM_002036	NP_002027	Q16570	DUFFY_HUMAN	Duffy blood group antigen isoform b	84	Helical; Name=1; (Potential).				defense response	integral to membrane|plasma membrane	C-C chemokine binding|chemokine receptor activity			ovary(1)|lung(1)	2	all_hematologic(112;0.0429)					TCATGCTTTTCAGACCTCTCT	0.597000													35	322					0	0	1	0	0
FCRL6	343413	broad.mit.edu	37	1	159778006	159778006	+	Missense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr1:159778006G>C	uc001fud.3	+	3	133	c.91G>C	c.(91-93)GAA>CAA	p.E31Q	FCRL6_uc010pix.1_Missense_Mutation_p.E26Q|FCRL6_uc001fuc.2_Missense_Mutation_p.E38Q|FCRL6_uc009wsz.1_Missense_Mutation_p.E31Q|FCRL6_uc009wta.2_Missense_Mutation_p.E31Q	NM_001004310	NP_001004310	Q6DN72	FCRL6_HUMAN	Fc receptor-like 6 precursor	31	Ig-like C2-type 1.|Extracellular (Potential).					integral to membrane				ovary(2)|skin(1)	3	all_hematologic(112;0.0597)					CCCTGTGTTTGAAGGAGATGC	0.517000													15	112					0	0	1	0	0
DCAF8	50717	broad.mit.edu	37	1	160187491	160187491	+	Missense_Mutation	SNP	C	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr1:160187491C>A	uc001fvo.2	-	14	1997	c.1685G>T	c.(1684-1686)CGA>CTA	p.R562L	DCAF8_uc001fvn.2_Missense_Mutation_p.R562L|DCAF8_uc009wth.2_Missense_Mutation_p.R562L|DCAF8_uc010pjb.1_Missense_Mutation_p.R562L|DCAF8_uc010pjc.1_Missense_Mutation_p.R716L	NM_015726	NP_056541	Q5TAQ9	DCAF8_HUMAN	DDB1 and CUL4 associated factor 8	562						CUL4 RING ubiquitin ligase complex	protein binding			skin(2)	2						CCCAGGTTCTCGCCAGCGCTG	0.557000													3	160					1	1	1	1	0
PEX19	5824	broad.mit.edu	37	1	160253331	160253331	+	Missense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr1:160253331C>G	uc001fvs.2	-	2	196	c.169G>C	c.(169-171)GAC>CAC	p.D57H	DCAF8_uc010pjc.1_Intron|PEX19_uc010pje.1_RNA|PEX19_uc001fvt.2_Intron	NM_002857	NP_002848	P40855	PEX19_HUMAN	peroxisomal biogenesis factor 19 isoform a	57	Necessary for PEX19 function on peroxisome biogenesis.				peroxisome membrane biogenesis|peroxisome organization|protein targeting to peroxisome|transmembrane transport	brush border membrane|cytosol|integral to membrane|nucleus|peroxisomal membrane	protein binding|protein N-terminus binding				0	all_cancers(52;1.27e-18)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.111)			TTGGCAGTGTCTCCTGGCGAT	0.597000													3	133					0	0	1	0	0
F11R	50848	broad.mit.edu	37	1	160971084	160971084	+	Missense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr1:160971084C>G	uc009wtt.2	-	2	394	c.124G>C	c.(124-126)GAG>CAG	p.E42Q	F11R_uc010pjv.1_Missense_Mutation_p.E42Q|F11R_uc001fxe.3_Missense_Mutation_p.E42Q|F11R_uc009wtu.2_Missense_Mutation_p.E42Q|F11R_uc010pjw.1_Missense_Mutation_p.E46Q|F11R_uc001fxf.3_Missense_Mutation_p.E42Q	NM_016946	NP_058642	Q9Y624	JAM1_HUMAN	F11 receptor precursor	42	Extracellular (Potential).|Ig-like V-type 1.				blood coagulation|inflammatory response|interspecies interaction between organisms|leukocyte migration|tight junction assembly	integral to membrane|tight junction				ovary(2)	2	all_cancers(52;6.73e-18)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.00207)			CGATTATTCTCAGGAATTCTG	0.572000													22	116					0	0	1	0	0
ARHGAP30	257106	broad.mit.edu	37	1	161018122	161018122	+	Missense_Mutation	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr1:161018122C>T	uc001fxl.2	-	12	3035	c.2689G>A	c.(2689-2691)GAG>AAG	p.E897K	USF1_uc001fxi.2_5'Flank|USF1_uc001fxj.2_5'Flank|ARHGAP30_uc001fxk.2_Missense_Mutation_p.E686K|ARHGAP30_uc001fxm.2_Missense_Mutation_p.E743K|ARHGAP30_uc009wtx.2_Missense_Mutation_p.E570K	NM_001025598	NP_001020769	Q7Z6I6	RHG30_HUMAN	Rho GTPase activating protein 30 isoform 1	897	Glu-rich.				regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity			ovary(2)|upper_aerodigestive_tract(1)	3	all_cancers(52;8.05e-20)|Breast(13;0.00188)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.00122)			GGCTCCATCTCCTCTGGCTGA	0.597000													18	79					0	0	1	0	0
ARHGAP30	257106	broad.mit.edu	37	1	161018560	161018560	+	Missense_Mutation	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr1:161018560C>T	uc001fxl.2	-	12	2597	c.2251G>A	c.(2251-2253)GAG>AAG	p.E751K	USF1_uc001fxi.2_5'Flank|USF1_uc001fxj.2_5'Flank|ARHGAP30_uc001fxk.2_Intron|ARHGAP30_uc001fxm.2_Missense_Mutation_p.E597K|ARHGAP30_uc009wtx.2_Missense_Mutation_p.E424K	NM_001025598	NP_001020769	Q7Z6I6	RHG30_HUMAN	Rho GTPase activating protein 30 isoform 1	751	Glu-rich.				regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity			ovary(2)|upper_aerodigestive_tract(1)	3	all_cancers(52;8.05e-20)|Breast(13;0.00188)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.00122)			TCTTCTCTCTCAATTTCTTTT	0.483000													82	411					0	0	1	0	0
USP21	27005	broad.mit.edu	37	1	161133352	161133352	+	Missense_Mutation	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr1:161133352G>A	uc010pke.1	+	8	1434	c.1057G>A	c.(1057-1059)GAC>AAC	p.D353N	USP21_uc010pkc.1_Missense_Mutation_p.D353N|USP21_uc010pkd.1_Missense_Mutation_p.D353N|USP21_uc010pkf.1_Missense_Mutation_p.D353N|PPOX_uc001fyj.2_5'Flank|PPOX_uc001fyn.2_5'Flank|PPOX_uc001fyg.2_5'Flank|PPOX_uc001fyl.2_5'Flank|PPOX_uc001fym.2_5'Flank|PPOX_uc001fyk.2_5'Flank|PPOX_uc001fyh.2_5'Flank|PPOX_uc010pkg.1_5'Flank|PPOX_uc009wuc.1_5'Flank|PPOX_uc010pkh.1_5'Flank|PPOX_uc001fyi.2_5'Flank	NM_001014443	NP_001014443	Q9UK80	UBP21_HUMAN	ubiquitin-specific protease 21	353					histone deubiquitination|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent|ubiquitin-dependent protein catabolic process	nucleus	metal ion binding|NEDD8-specific protease activity|protein binding|transcription coactivator activity|ubiquitin thiolesterase activity|ubiquitin-specific protease activity			ovary(2)|lung(1)|prostate(1)|breast(1)	5	all_cancers(52;3.73e-19)|Breast(13;0.000577)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.00275)			TAGTGATGATGACCGAGCCAA	0.517000													9	76					0	0	1	0	0
B4GALT3	8703	broad.mit.edu	37	1	161142095	161142095	+	Missense_Mutation	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr1:161142095G>A	uc001fyq.1	-	7	1092	c.830C>T	c.(829-831)TCT>TTT	p.S277F	PPOX_uc010pkh.1_Intron|PPOX_uc001fyi.2_Intron|B4GALT3_uc001fyo.1_Missense_Mutation_p.S57F|B4GALT3_uc001fyp.1_RNA|B4GALT3_uc001fyr.1_Missense_Mutation_p.S277F|B4GALT3_uc001fys.1_Missense_Mutation_p.S277F	NM_003779	NP_003770	O60512	B4GT3_HUMAN	UDP-Gal:betaGlcNAc beta 1,4-	277	Lumenal (Potential).				post-translational protein modification|protein N-linked glycosylation via asparagine	Golgi cisterna membrane|integral to membrane	beta-N-acetylglucosaminylglycopeptide beta-1,4-galactosyltransferase activity|metal ion binding|N-acetyllactosamine synthase activity				0	all_cancers(52;3.73e-19)|Breast(13;0.000577)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.00275)		N-Acetyl-D-glucosamine(DB00141)	GGGGGGCCGAGAGATCTTCAT	0.507000													31	166					0	0	1	0	0
FCGR2C	9103	broad.mit.edu	37	1	161559450	161559450	+	Missense_Mutation	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr1:161559450G>A	uc001gav.2	+	4	331	c.232G>A	c.(232-234)GAG>AAG	p.E78K	FCGR2C_uc009wuj.2_RNA|FCGR2C_uc009wuk.2_RNA	NM_201563	NP_963857			Fc fragment of IgG, low affinity IIc, receptor												0	all_cancers(52;4.89e-16)|all_hematologic(112;0.0207)		BRCA - Breast invasive adenocarcinoma(70;0.00376)			TCACAGCCCTGAGAGCGACTC	0.572000													27	108					0	0	1	0	0
NOS1AP	9722	broad.mit.edu	37	1	162326784	162326784	+	Missense_Mutation	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr1:162326784C>T	uc001gbv.2	+	8	1184	c.797C>T	c.(796-798)TCA>TTA	p.S266L	NOS1AP_uc010pkr.1_Missense_Mutation_p.S261L|NOS1AP_uc010pks.1_RNA|NOS1AP_uc001gbw.2_Missense_Mutation_p.S261L	NM_014697	NP_055512	O75052	CAPON_HUMAN	nitric oxide synthase 1 (neuronal) adaptor	266					regulation of apoptosis|regulation of nitric oxide biosynthetic process|regulation of nitric-oxide synthase activity		nitric-oxide synthase binding|PDZ domain binding			lung(2)|upper_aerodigestive_tract(1)	3	all_hematologic(112;0.203)		BRCA - Breast invasive adenocarcinoma(70;0.0537)			CTGACAGCCTCACCCAGGATG	0.547000													15	699					0	0	1	0	0
C1orf226	400793	broad.mit.edu	37	1	162353431	162353431	+	Silent	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr1:162353431C>G	uc001gby.2	+	2	949	c.777C>G	c.(775-777)CTC>CTG	p.L259L	C1orf226_uc010pkt.1_Silent_p.L302L	NM_001085375	NP_001078844	A1L170	CA226_HUMAN	hypothetical protein LOC400793 isoform 2	259										ovary(1)	1						CCTCCAGCCTCGACAATGAGG	0.587000													5	29					0	0	1	0	0
UAP1	6675	broad.mit.edu	37	1	162546701	162546701	+	Nonsense_Mutation	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr1:162546701C>T	uc001gce.3	+	3	744	c.415C>T	c.(415-417)CAA>TAA	p.Q139*		NM_003115	NP_003106	Q16222	UAP1_HUMAN	UDP-N-acetylglucosamine pyrophosphorylase 1	139					dolichol-linked oligosaccharide biosynthetic process|post-translational protein modification|protein N-linked glycosylation via asparagine|UDP-N-acetylglucosamine biosynthetic process	cytosol|nucleus|plasma membrane	UDP-N-acetylglucosamine diphosphorylase activity			ovary(2)|skin(2)|kidney(1)	5	all_hematologic(112;0.115)		BRCA - Breast invasive adenocarcinoma(70;0.126)			TTTTCAGATTCAAGCAGAGCG	0.443000													25	181					0	0	1	0	0
UAP1	6675	broad.mit.edu	37	1	162560263	162560263	+	Silent	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr1:162560263C>T	uc001gce.3	+	8	1649	c.1320C>T	c.(1318-1320)TTC>TTT	p.F440F		NM_003115	NP_003106	Q16222	UAP1_HUMAN	UDP-N-acetylglucosamine pyrophosphorylase 1	440					dolichol-linked oligosaccharide biosynthetic process|post-translational protein modification|protein N-linked glycosylation via asparagine|UDP-N-acetylglucosamine biosynthetic process	cytosol|nucleus|plasma membrane	UDP-N-acetylglucosamine diphosphorylase activity			ovary(2)|skin(2)|kidney(1)	5	all_hematologic(112;0.115)		BRCA - Breast invasive adenocarcinoma(70;0.126)			GGGGCCATTTCATAGATGAAA	0.443000													28	132					0	0	1	0	0
UAP1	6675	broad.mit.edu	37	1	162567621	162567621	+	Missense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr1:162567621C>G	uc001gce.3	+	9	1727	c.1398C>G	c.(1396-1398)ATC>ATG	p.I466M		NM_003115	NP_003106	Q16222	UAP1_HUMAN	UDP-N-acetylglucosamine pyrophosphorylase 1	483					dolichol-linked oligosaccharide biosynthetic process|post-translational protein modification|protein N-linked glycosylation via asparagine|UDP-N-acetylglucosamine biosynthetic process	cytosol|nucleus|plasma membrane	UDP-N-acetylglucosamine diphosphorylase activity			ovary(2)|skin(2)|kidney(1)	5	all_hematologic(112;0.115)		BRCA - Breast invasive adenocarcinoma(70;0.126)			AATGTGAAATCTCTCCTCTTA	0.308000													28	284					0	0	1	0	0
LMX1A	4009	broad.mit.edu	37	1	165173199	165173199	+	Nonsense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr1:165173199G>C	uc001gcy.1	-	8	1288	c.1067C>G	c.(1066-1068)TCA>TGA	p.S356*	LMX1A_uc001gcz.1_Nonsense_Mutation_p.S356*|LMX1A_uc001gcw.1_Nonsense_Mutation_p.S74*|LMX1A_uc001gcx.1_Nonsense_Mutation_p.S107*	NM_177398	NP_796372	Q8TE12	LMX1A_HUMAN	LIM homeobox transcription factor 1, alpha	356						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			central_nervous_system(3)|upper_aerodigestive_tract(1)|pancreas(1)	5	all_hematologic(923;0.248)					CCCAGCTTCTGAGGTTGCTAG	0.507000													37	211					0	0	1	0	0
LMX1A	4009	broad.mit.edu	37	1	165322470	165322470	+	Missense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr1:165322470C>G	uc001gcy.1	-	2	327	c.106G>C	c.(106-108)GAG>CAG	p.E36Q	LMX1A_uc001gcz.1_Missense_Mutation_p.E36Q	NM_177398	NP_796372	Q8TE12	LMX1A_HUMAN	LIM homeobox transcription factor 1, alpha	36	LIM zinc-binding 1.					nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			central_nervous_system(3)|upper_aerodigestive_tract(1)|pancreas(1)	5	all_hematologic(923;0.248)					TGACAGCCCTCGCAGACAGAC	0.637000													5	53					0	0	1	0	0
LRRC52	440699	broad.mit.edu	37	1	165513896	165513896	+	Missense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr1:165513896C>G	uc001gde.2	+	1	419	c.363C>G	c.(361-363)TTC>TTG	p.F121L	LOC400794_uc001gdc.2_Intron|LOC400794_uc001gdd.2_Intron|LOC400794_uc009wvd.2_Intron	NM_001005214	NP_001005214	Q8N7C0	LRC52_HUMAN	leucine rich repeat containing 52 precursor	121	LRR 3.|Extracellular (Potential).					integral to membrane				ovary(1)	1	all_hematologic(923;0.0773)|Acute lymphoblastic leukemia(8;0.155)					CATTCACTTTCTCGGTGCTCA	0.498000													5	447					0	0	1	0	0
LRRC52	440699	broad.mit.edu	37	1	165514074	165514074	+	Silent	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr1:165514074C>T	uc001gde.2	+	1	597	c.541C>T	c.(541-543)CTG>TTG	p.L181L	LOC400794_uc001gdc.2_Intron|LOC400794_uc001gdd.2_Intron|LOC400794_uc009wvd.2_Intron	NM_001005214	NP_001005214	Q8N7C0	LRC52_HUMAN	leucine rich repeat containing 52 precursor	181	Extracellular (Potential).					integral to membrane				ovary(1)	1	all_hematologic(923;0.0773)|Acute lymphoblastic leukemia(8;0.155)					GACCCTGTTTCTGAGTGGAAA	0.522000													52	293					0	0	1	0	0
DUSP27	92235	broad.mit.edu	37	1	167097844	167097844	+	Nonstop_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr1:167097844G>C	uc001geb.1	+	5	3476	c.3476G>C	c.(3475-3477)TGA>TCA	p.*1159S		NM_001080426	NP_001073895	Q5VZP5	DUS27_HUMAN	dual specificity phosphatase 27	1159					protein dephosphorylation		protein tyrosine/serine/threonine phosphatase activity			ovary(3)	3						AGGGAGGACTGAGCTGGGGAA	0.522000													12	49					0	0	1	0	0
POU2F1	5451	broad.mit.edu	37	1	167301706	167301706	+	Splice_Site	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr1:167301706G>C	uc001gec.2	+	3	155	c.-7_splice	c.e3-1		POU2F1_uc010plg.1_Splice_Site|POU2F1_uc001ged.2_Splice_Site|POU2F1_uc001gee.2_Splice_Site|POU2F1_uc010plh.1_Splice_Site|POU2F1_uc001gef.2_Splice_Site_p.D10_splice	NM_002697	NP_002688	P14859	PO2F1_HUMAN	POU class 2 homeobox 1						negative regulation of transcription, DNA-dependent|transcription from RNA polymerase III promoter	nucleoplasm	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			central_nervous_system(2)|skin(2)|breast(1)	5						ATTTATTGCAGACTCAAGAAT	0.383000													19	59					0	0	1	0	0
RCSD1	92241	broad.mit.edu	37	1	167666535	167666535	+	Missense_Mutation	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr1:167666535G>A	uc001gem.2	+	6	861	c.674G>A	c.(673-675)GGA>GAA	p.G225E	RCSD1_uc010pli.1_Missense_Mutation_p.G195E	NM_052862	NP_443094	Q6JBY9	CPZIP_HUMAN	RCSD domain containing 1	225										ovary(2)|central_nervous_system(2)|skin(1)	5	all_hematologic(923;0.215)					GGAGCAGCGGGAGAGGGAGTG	0.592000													45	63					0	0	1	0	0
ADCY10	55811	broad.mit.edu	37	1	167839635	167839635	+	Missense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr1:167839635C>G	uc001ger.2	-	14	1774	c.1476G>C	c.(1474-1476)GAG>GAC	p.E492D	ADCY10_uc009wvk.2_Missense_Mutation_p.E400D|ADCY10_uc010plj.1_Missense_Mutation_p.E339D|ADCY10_uc009wvl.2_Missense_Mutation_p.E491D	NM_018417	NP_060887	Q96PN6	ADCYA_HUMAN	adenylate cyclase 10	492					intracellular signal transduction|spermatogenesis	cytoskeleton|cytosol|perinuclear region of cytoplasm|plasma membrane|soluble fraction	adenylate cyclase activity|ATP binding|magnesium ion binding			central_nervous_system(2)|ovary(1)	3						AGTAGTTGATCTCTTTATTAC	0.318000													5	67					0	0	1	0	0
TBX19	9095	broad.mit.edu	37	1	168274320	168274320	+	Missense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr1:168274320C>G	uc001gfl.2	+	6	853	c.802C>G	c.(802-804)CTG>GTG	p.L268V	TBX19_uc001gfj.3_Intron|TBX19_uc001gfm.2_5'UTR	NM_005149	NP_005140	O60806	TBX19_HUMAN	T-box 19	268					anatomical structure morphogenesis	nucleus	DNA binding				0	all_hematologic(923;0.215)					TGCCGCTCCTCTGCCTCTGCC	0.542000													126	135					0	0	1	0	0
C1orf112	55732	broad.mit.edu	37	1	169792605	169792605	+	Missense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr1:169792605G>C	uc001ggp.2	+	11	1150	c.840G>C	c.(838-840)CAG>CAC	p.Q280H	C1orf112_uc001ggj.2_RNA|C1orf112_uc001ggq.2_Missense_Mutation_p.Q280H|C1orf112_uc009wvt.2_5'UTR|C1orf112_uc010plu.1_Missense_Mutation_p.Q251H|C1orf112_uc009wvu.1_Intron|C1orf112_uc001ggr.2_Missense_Mutation_p.Q145H|C1orf112_uc010plv.1_Missense_Mutation_p.Q222H	NM_018186	NP_060656	Q9NSG2	CA112_HUMAN	hypothetical protein LOC55732	280											0	all_hematologic(923;0.0922)|Acute lymphoblastic leukemia(37;0.181)					TGTATCTTCAGATACACAGGT	0.333000													37	239					0	0	1	0	0
FASLG	356	broad.mit.edu	37	1	172635076	172635076	+	Missense_Mutation	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr1:172635076C>T	uc001gis.2	+	4	923	c.766C>T	c.(766-768)CAT>TAT	p.H256Y	FASLG_uc001git.2_3'UTR	NM_000639	NP_000630	P48023	TNFL6_HUMAN	fas ligand	256	Extracellular (Potential).				activation of caspase activity|activation of pro-apoptotic gene products|cell-cell signaling|immune response|induction of necroptosis by extracellular signals|induction of necroptosis of activated-T cells|necrotic cell death|negative regulation of angiogenesis|positive regulation of I-kappaB kinase/NF-kappaB cascade|signal transduction	extracellular space|integral to plasma membrane	cytokine activity			lung(2)|breast(1)	3						CAGTGCTGATCATTTATATGT	0.473000													27	222					0	0	1	0	0
TNN	63923	broad.mit.edu	37	1	175067646	175067646	+	Silent	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr1:175067646G>C	uc001gkl.1	+	9	2147	c.2034G>C	c.(2032-2034)CTG>CTC	p.L678L	TNN_uc010pmx.1_Silent_p.L589L	NM_022093	NP_071376	Q9UQP3	TENN_HUMAN	tenascin N precursor	678	Fibronectin type-III 5.				cell growth|cell migration|signal transduction	extracellular space|proteinaceous extracellular matrix				large_intestine(5)|ovary(3)|central_nervous_system(1)	9		Breast(1374;0.000962)		KIRC - Kidney renal clear cell carcinoma(1967;0.00198)		TGACAGGCCTGAGACCGGGTA	0.612000													4	236					0	0	1	0	0
PAPPA2	60676	broad.mit.edu	37	1	176525786	176525786	+	Missense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr1:176525786G>C	uc001gkz.2	+	2	1492	c.328G>C	c.(328-330)GAC>CAC	p.D110H	PAPPA2_uc001gky.1_Missense_Mutation_p.D110H|PAPPA2_uc009www.2_RNA	NM_020318	NP_064714	Q9BXP8	PAPP2_HUMAN	pappalysin 2 isoform 1	110					cell differentiation|proteolysis|regulation of cell growth	extracellular region|intracellular|membrane	metalloendopeptidase activity|zinc ion binding			ovary(7)|central_nervous_system(5)|skin(2)|lung(1)|breast(1)	16						TGTTCCCCCAGACCTGACTGA	0.557000													79	368					0	0	1	0	0
PAPPA2	60676	broad.mit.edu	37	1	176640121	176640121	+	Silent	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr1:176640121G>A	uc001gkz.2	+	4	3171	c.2007G>A	c.(2005-2007)GTG>GTA	p.V669V	PAPPA2_uc001gky.1_Silent_p.V669V|PAPPA2_uc009www.2_RNA	NM_020318	NP_064714	Q9BXP8	PAPP2_HUMAN	pappalysin 2 isoform 1	669	Metalloprotease.				cell differentiation|proteolysis|regulation of cell growth	extracellular region|intracellular|membrane	metalloendopeptidase activity|zinc ion binding			ovary(7)|central_nervous_system(5)|skin(2)|lung(1)|breast(1)	16						ACATGAGTGTGAAGGAGCTGA	0.483000													13	523					0	0	1	0	0
PAPPA2	60676	broad.mit.edu	37	1	176664908	176664908	+	Missense_Mutation	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr1:176664908G>A	uc001gkz.2	+	7	3823	c.2659G>A	c.(2659-2661)GAT>AAT	p.D887N	PAPPA2_uc009www.2_RNA	NM_020318	NP_064714	Q9BXP8	PAPP2_HUMAN	pappalysin 2 isoform 1	887					cell differentiation|proteolysis|regulation of cell growth	extracellular region|intracellular|membrane	metalloendopeptidase activity|zinc ion binding			ovary(7)|central_nervous_system(5)|skin(2)|lung(1)|breast(1)	16						TTGCACTGAAGATGGGACCTT	0.542000													56	213					0	0	1	0	0
PAPPA2	60676	broad.mit.edu	37	1	176671814	176671814	+	Missense_Mutation	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr1:176671814C>T	uc001gkz.2	+	9	4472	c.3308C>T	c.(3307-3309)TCG>TTG	p.S1103L	PAPPA2_uc009www.2_RNA	NM_020318	NP_064714	Q9BXP8	PAPP2_HUMAN	pappalysin 2 isoform 1	1103					cell differentiation|proteolysis|regulation of cell growth	extracellular region|intracellular|membrane	metalloendopeptidase activity|zinc ion binding			ovary(7)|central_nervous_system(5)|skin(2)|lung(1)|breast(1)	16						GGAGAAGCTTCGCCTCCTCTG	0.413000													11	88					0	0	1	0	0
ASTN1	460	broad.mit.edu	37	1	177133810	177133810	+	Missense_Mutation	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr1:177133810C>T	uc001glc.2	-	1	215	c.3G>A	c.(1-3)ATG>ATA	p.M1I	ASTN1_uc001glb.1_Missense_Mutation_p.M1I|ASTN1_uc001gld.1_Missense_Mutation_p.M1I|ASTN1_uc009wwx.1_Missense_Mutation_p.M1I	NM_004319	NP_004310	O14525	ASTN1_HUMAN	astrotactin isoform 1	1					cell migration|neuron cell-cell adhesion	integral to membrane				ovary(6)|skin(5)|central_nervous_system(2)|large_intestine(1)|lung(1)	15						CGGCTAAAGCCATCTTGAGCC	0.507000													11	10					0	0	1	0	0
TOR1AIP2	163590	broad.mit.edu	37	1	179820219	179820219	+	Missense_Mutation	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr1:179820219G>A	uc001gnk.2	-	4	702	c.314C>T	c.(313-315)TCA>TTA	p.S105L	TOR1AIP2_uc001gnl.2_Missense_Mutation_p.S105L	NM_145034	NP_659471	Q8NFQ8	TOIP2_HUMAN	torsin A interacting protein 2	105						endoplasmic reticulum membrane|integral to membrane	protein binding			ovary(1)	1						CAGATTTTCTGAAGGGAGGTG	0.483000													16	112					0	0	1	0	0
FAM129A	116496	broad.mit.edu	37	1	184764121	184764121	+	Missense_Mutation	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr1:184764121G>A	uc001gra.2	-	14	2971	c.2777C>T	c.(2776-2778)TCA>TTA	p.S926L	FAM129A_uc001grb.1_Intron	NM_052966	NP_443198	Q9BZQ8	NIBAN_HUMAN	niban protein isoform 2	926					negative regulation of protein phosphorylation|positive regulation of protein phosphorylation|positive regulation of translation|response to endoplasmic reticulum stress	cytoplasm|nucleus|plasma membrane				ovary(3)|skin(1)	4						TCACTCCTCTGAGGGCAGCTC	0.502000													34	207					0	0	1	0	0
HMCN1	83872	broad.mit.edu	37	1	185984542	185984542	+	Missense_Mutation	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr1:185984542G>A	uc001grq.1	+	31	5111	c.4882G>A	c.(4882-4884)GAA>AAA	p.E1628K		NM_031935	NP_114141	Q96RW7	HMCN1_HUMAN	hemicentin 1 precursor	1628	Ig-like C2-type 13.				response to stimulus|visual perception	basement membrane	calcium ion binding			ovary(22)|skin(1)	23						TGGAACTGCTGAAAAATCATT	0.348000													19	120					0	0	1	0	0
TPR	7175	broad.mit.edu	37	1	186302371	186302371	+	Missense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr1:186302371G>C	uc001grv.2	-	37	5635	c.5338C>G	c.(5338-5340)CAA>GAA	p.Q1780E		NM_003292	NP_003283	P12270	TPR_HUMAN	nuclear pore complex-associated protein TPR	1780					carbohydrate metabolic process|glucose transport|mitotic cell cycle spindle assembly checkpoint|mRNA transport|protein import into nucleus|regulation of glucose transport|seryl-tRNA aminoacylation|transmembrane transport|viral reproduction	condensed chromosome kinetochore|cytoplasm|nuclear membrane|nuclear pore|nucleoplasm	ATP binding|protein binding|serine-tRNA ligase activity			ovary(2)|lung(2)|urinary_tract(1)|central_nervous_system(1)|skin(1)	7		Breast(1374;0.000659)|Lung SC(1967;0.0262)|Prostate(1639;0.157)		Colorectal(1306;1.12e-05)|KIRC - Kidney renal clear cell carcinoma(1967;0.00553)		TGACTCTGTTGAGTGGGTTGC	0.443000			T	NTRK1	papillary thyroid								46	157					0	0	1	0	0
PLA2G4A	5321	broad.mit.edu	37	1	186862216	186862216	+	Missense_Mutation	SNP	C	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr1:186862216C>A	uc001gsc.2	+	4	394	c.189C>A	c.(187-189)TTC>TTA	p.F63L	PLA2G4A_uc010pos.1_Missense_Mutation_p.F63L	NM_024420	NP_077734	P47712	PA24A_HUMAN	cytosolic phospholipase A2, group IVA	63	C2.|Phospholipid binding (Probable).				phospholipid catabolic process|platelet activating factor biosynthetic process|platelet activation	cytosol|endoplasmic reticulum membrane	calcium ion binding|calcium-dependent phospholipid binding|lysophospholipase activity			lung(2)|breast(1)	3					Flunisolide(DB00180)|Fluocinolone Acetonide(DB00591)|Fluocinonide(DB01047)|Fluorometholone(DB00324)|Flurandrenolide(DB00846)|Fluticasone Propionate(DB00588)|Medrysone(DB00253)|Quinacrine(DB01103)	CAAGACATTTCAATAATGACA	0.373000													6	352					0.0293803	0.0294944	1	1	0
UCHL5	51377	broad.mit.edu	37	1	192992151	192992151	+	Missense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr1:192992151C>G	uc001gsm.2	-	9	882	c.751G>C	c.(751-753)GAT>CAT	p.D251H	UCHL5_uc001gsn.2_RNA|UCHL5_uc001gso.2_Missense_Mutation_p.D250H|UCHL5_uc010pov.1_RNA|UCHL5_uc001gsp.2_Missense_Mutation_p.D250H|UCHL5_uc001gsq.2_Missense_Mutation_p.D250H|UCHL5_uc010pow.1_Missense_Mutation_p.D126H|UCHL5_uc010pox.1_Missense_Mutation_p.D127H	NM_015984	NP_057068	Q9Y5K5	UCHL5_HUMAN	ubiquitin carboxyl-terminal hydrolase L5	251					DNA recombination|DNA repair|protein deubiquitination|regulation of proteasomal protein catabolic process|regulation of transcription, DNA-dependent|transcription, DNA-dependent|ubiquitin-dependent protein catabolic process	cytosol|Ino80 complex|proteasome complex	endopeptidase inhibitor activity|omega peptidase activity|proteasome binding|ubiquitin thiolesterase activity|ubiquitin-specific protease activity			lung(2)|ovary(1)	3						TTACCTTGATCTGTATCCATG	0.338000													4	301					0	0	1	0	0
CDC73	79577	broad.mit.edu	37	1	193121523	193121523	+	Missense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr1:193121523C>G	uc001gtb.2	+	10	1164	c.921C>G	c.(919-921)TTC>TTG	p.F307L		NM_024529	NP_078805	Q6P1J9	CDC73_HUMAN	parafibromin	307					cell cycle|histone H2B ubiquitination|histone monoubiquitination|transcription, DNA-dependent	Cdc73/Paf1 complex	protein binding			parathyroid(46)|ovary(1)|breast(1)|pancreas(1)	49						CGGAAGGCTTCAAAATTGACA	0.328000									Hyperparathyroidism_Familial_Isolated|Hyperparathyroidism-Jaw_Tumor_Syndrome				43	63					0	0	1	0	0
F13B	2165	broad.mit.edu	37	1	197026206	197026206	+	Missense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr1:197026206G>C	uc001gtt.1	-	7	1152	c.1108C>G	c.(1108-1110)CTC>GTC	p.L370V		NM_001994	NP_001985	P05160	F13B_HUMAN	coagulation factor XIII B subunit precursor	370	Sushi 6.				blood coagulation	extracellular region				upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	3						GATCCATGGAGAAGGTAGCCG	0.388000													23	121					0	0	1	0	0
CRB1	23418	broad.mit.edu	37	1	197396583	197396583	+	Splice_Site	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr1:197396583G>C	uc001gtz.2	+	7	2264	c.2129_splice	c.e7-1	p.E710_splice	CRB1_uc010poz.1_Splice_Site_p.E641_splice|CRB1_uc010ppa.1_Splice_Site|CRB1_uc009wza.2_Splice_Site_p.E598_splice|CRB1_uc010ppb.1_Intron|CRB1_uc010ppc.1_Splice_Site|CRB1_uc010ppd.1_Splice_Site_p.E191_splice|CRB1_uc001gub.1_Splice_Site_p.E359_splice	NM_201253	NP_957705	P82279	CRUM1_HUMAN	crumbs homolog 1 precursor						cell-cell signaling|establishment or maintenance of cell polarity	apical plasma membrane|extracellular region|integral to membrane	calcium ion binding|protein binding			ovary(5)|skin(3)|large_intestine(1)	9						TGACATTGAAGAGTATGTGGC	0.388000													22	85					0	0	1	0	0
NR5A2	2494	broad.mit.edu	37	1	200012937	200012937	+	Missense_Mutation	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr1:200012937G>A	uc001gvb.2	+	3	444	c.238G>A	c.(238-240)GAA>AAA	p.E80K	NR5A2_uc001gvc.2_Missense_Mutation_p.E34K|NR5A2_uc009wzh.2_Missense_Mutation_p.E40K|NR5A2_uc010pph.1_Missense_Mutation_p.E8K	NM_205860	NP_995582	O00482	NR5A2_HUMAN	nuclear receptor subfamily 5, group A, member 2	80					embryo development|positive regulation of viral genome replication|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	cytoplasm|nucleoplasm	lipid binding|protein binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|steroid hormone receptor activity|transcription regulatory region DNA binding|zinc ion binding			large_intestine(1)|ovary(1)	2	Prostate(682;0.19)					CTCCTATGATGAAGATCTGGA	0.388000													16	75					0	0	1	0	0
IGFN1	91156	broad.mit.edu	37	1	201185842	201185842	+	Missense_Mutation	SNP	G	A	A	rs143611839		TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr1:201185842G>A	uc001gwc.2	+	5	1808	c.1036G>A	c.(1036-1038)GAG>AAG	p.E346K	IGFN1_uc001gwb.2_RNA	NM_178275	NP_840059			RecName: Full=Immunoglobulin-like and fibronectin type III domain-containing protein 1; AltName: Full=EEF1A2-binding protein 1; AltName: Full=KY-interacting protein 1;											ovary(2)|pancreas(1)	3						GGGGGCTGGCGAGGCCCTGGA	0.657000													17	163					0	0	1	0	0
PKP1	5317	broad.mit.edu	37	1	201282343	201282343	+	Missense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr1:201282343C>G	uc001gwd.2	+	3	607	c.356C>G	c.(355-357)TCC>TGC	p.S119C	PKP1_uc001gwe.2_Missense_Mutation_p.S119C|PKP1_uc009wzm.2_5'UTR	NM_000299	NP_000290	Q13835	PKP1_HUMAN	plakophilin 1 isoform 1b	119					cell adhesion|cellular component disassembly involved in apoptosis|multicellular organismal development	desmosome|intermediate filament|nucleus	intermediate filament binding|signal transducer activity|structural constituent of epidermis			ovary(2)	2						CGCTTCAGCTCCTACAGCCAG	0.582000													3	31					0	0	1	0	0
IPO9	55705	broad.mit.edu	37	1	201840313	201840313	+	Missense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr1:201840313C>G	uc001gwz.2	+	19	2484	c.2434C>G	c.(2434-2436)CTG>GTG	p.L812V		NM_018085	NP_060555	Q96P70	IPO9_HUMAN	importin 9	812					protein import into nucleus	cytoplasm|nucleus	histone binding|protein transporter activity			ovary(2)	2						GTTCGCTCATCTGGTGCACAC	0.493000													32	271					0	0	1	0	0
TMCC2	9911	broad.mit.edu	37	1	205197695	205197695	+	Missense_Mutation	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr1:205197695G>A	uc001hbz.1	+	2	447	c.3G>A	c.(1-3)ATG>ATA	p.M1I	TMCC2_uc010prf.1_5'Flank	NM_014858	NP_055673	O75069	TMCC2_HUMAN	transmembrane and coiled-coil domain family 2	1						integral to membrane	protein binding			pancreas(1)	1	Breast(84;0.0871)		BRCA - Breast invasive adenocarcinoma(75;0.117)			CATACACCATGAAGAGGTGCA	0.617000													21	69					0	0	1	0	0
PLXNA2	5362	broad.mit.edu	37	1	208383784	208383784	+	Silent	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr1:208383784G>A	uc001hgz.2	-	3	1970	c.1212C>T	c.(1210-1212)TTC>TTT	p.F404F	PLXNA2_uc001hha.3_Silent_p.F458F	NM_025179	NP_079455	O75051	PLXA2_HUMAN	plexin A2 precursor	404	Extracellular (Potential).|Sema.				axon guidance	integral to membrane|intracellular|plasma membrane				ovary(2)|central_nervous_system(1)	3				OV - Ovarian serous cystadenocarcinoma(81;0.199)		CCAGTCCACAGAAGTTATCAT	0.577000													17	33					0	0	1	0	0
IRF6	3664	broad.mit.edu	37	1	209969858	209969858	+	Missense_Mutation	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr1:209969858C>T	uc001hhq.1	-	4	477	c.214G>A	c.(214-216)GAT>AAT	p.D72N	IRF6_uc010psm.1_5'UTR|IRF6_uc009xct.1_Missense_Mutation_p.D72N	NM_006147	NP_006138	O14896	IRF6_HUMAN	interferon regulatory factor 6	72	IRF tryptophan pentad repeat.				cell cycle arrest|interferon-gamma-mediated signaling pathway|mammary gland epithelial cell differentiation|negative regulation of cell proliferation|positive regulation of transcription, DNA-dependent|type I interferon-mediated signaling pathway	cytoplasm|nucleus	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity			ovary(2)	2				OV - Ovarian serous cystadenocarcinoma(81;0.0351)		TCAGGGTCATCCACCCCTTCC	0.532000										HNSCC(57;0.16)			23	98					0	0	1	0	0
C1orf107	27042	broad.mit.edu	37	1	210015687	210015687	+	Silent	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr1:210015687C>G	uc001hhr.1	+	9	1639	c.1563C>G	c.(1561-1563)CTC>CTG	p.L521L	C1orf107_uc009xcu.1_Silent_p.L236L	NM_014388	NP_055203	Q68CQ4	DIEXF_HUMAN	digestive-organ expansion factor homolog	521					multicellular organismal development	nucleus					0				OV - Ovarian serous cystadenocarcinoma(81;0.0367)		TGTGGAGCCTCAATAATTGGT	0.458000													25	135					0	0	1	0	0
C1orf107	27042	broad.mit.edu	37	1	210015736	210015736	+	Nonsense_Mutation	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr1:210015736C>T	uc001hhr.1	+	9	1688	c.1612C>T	c.(1612-1614)CAG>TAG	p.Q538*	C1orf107_uc009xcu.1_Nonsense_Mutation_p.Q253*	NM_014388	NP_055203	Q68CQ4	DIEXF_HUMAN	digestive-organ expansion factor homolog	538					multicellular organismal development	nucleus					0				OV - Ovarian serous cystadenocarcinoma(81;0.0367)		TGGGGCCCTTCAGGATGCCCA	0.498000													30	181					0	0	1	0	0
USH2A	7399	broad.mit.edu	37	1	216256809	216256809	+	Missense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr1:216256809C>G	uc001hku.1	-	26	5674	c.5287G>C	c.(5287-5289)GAT>CAT	p.D1763H		NM_206933	NP_996816	O75445	USH2A_HUMAN	usherin isoform B	1763	Laminin G-like 2.|Extracellular (Potential).				maintenance of organ identity|photoreceptor cell maintenance|response to stimulus|sensory perception of sound	basement membrane|cytoplasm|integral to membrane|stereocilium membrane	collagen binding			ovary(20)|upper_aerodigestive_tract(2)|skin(2)|kidney(1)|central_nervous_system(1)	26				OV - Ovarian serous cystadenocarcinoma(81;0.0547)|all cancers(67;0.0875)		GCAAGAAAATCAGGTCCATCT	0.284000										HNSCC(13;0.011)			95	132					0	0	1	0	0
C1orf58	148362	broad.mit.edu	37	1	222898873	222898873	+	Missense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr1:222898873C>G	uc001hnq.1	+	7	951	c.556C>G	c.(556-558)CAA>GAA	p.Q186E	C1orf58_uc010put.1_Missense_Mutation_p.Q154E|C1orf58_uc010puu.1_Missense_Mutation_p.Q186E|C1orf58_uc010puv.1_Missense_Mutation_p.Q154E	NM_144695	NP_653296	Q5VW32	BROX_HUMAN	Bro1-domain-containing protein	186	BRO1.					membrane					0				GBM - Glioblastoma multiforme(131;0.0667)		ATACGTTATTCAATGTCAGGC	0.333000													6	81					0	0	1	0	0
SUSD4	55061	broad.mit.edu	37	1	223396808	223396808	+	Missense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr1:223396808C>G	uc001hnx.2	-	7	1861	c.1227G>C	c.(1225-1227)CAG>CAC	p.Q409H	SUSD4_uc001hny.3_Missense_Mutation_p.Q409H|SUSD4_uc010puw.1_Missense_Mutation_p.Q249H	NM_017982	NP_060452	Q5VX71	SUSD4_HUMAN	sushi domain containing 4 isoform a	409	Cytoplasmic (Potential).					integral to membrane					0				GBM - Glioblastoma multiforme(131;0.0611)		CTGGGGGGCTCTGGTCGTCCA	0.642000													10	53					0	0	1	0	0
SUSD4	55061	broad.mit.edu	37	1	223441956	223441956	+	Missense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr1:223441956C>G	uc001hnx.2	-	3	1057	c.423G>C	c.(421-423)GAG>GAC	p.E141D	SUSD4_uc001hny.3_Missense_Mutation_p.E141D|SUSD4_uc010puw.1_5'UTR|SUSD4_uc001hnz.2_Missense_Mutation_p.E141D|SUSD4_uc010pux.1_Missense_Mutation_p.E70D	NM_017982	NP_060452	Q5VX71	SUSD4_HUMAN	sushi domain containing 4 isoform a	141	Sushi 2.|Extracellular (Potential).					integral to membrane					0				GBM - Glioblastoma multiforme(131;0.0611)		TGATTAGCTTCTCTCCATGTC	0.388000													29	164					0	0	1	0	0
LEFTY1	10637	broad.mit.edu	37	1	226075320	226075320	+	Missense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr1:226075320C>G	uc001hpo.2	-	3	586	c.516G>C	c.(514-516)GAG>GAC	p.E172D	LEFTY1_uc010pvj.1_Missense_Mutation_p.E281Q|LEFTY1_uc009xej.1_3'UTR	NM_020997	NP_066277	O75610	LFTY1_HUMAN	left-right determination, factor B	172					cell growth|multicellular organismal development|transforming growth factor beta receptor signaling pathway	extracellular space	cytokine activity|growth factor activity|transforming growth factor beta receptor binding				0	Breast(184;0.197)					TCCAGCCGCTCTCGTGGACGG	0.716000													6	43					0	0	1	0	0
CDC42BPA	8476	broad.mit.edu	37	1	227288802	227288802	+	Missense_Mutation	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr1:227288802C>T	uc001hqr.2	-	15	3083	c.2140G>A	c.(2140-2142)GAA>AAA	p.E714K	CDC42BPA_uc001hqq.2_5'UTR|CDC42BPA_uc001hqs.2_Missense_Mutation_p.E633K|CDC42BPA_uc009xes.2_Missense_Mutation_p.E714K|CDC42BPA_uc010pvs.1_Missense_Mutation_p.E714K	NM_003607	NP_003598	Q5VT25	MRCKA_HUMAN	CDC42-binding protein kinase alpha isoform B	714	Potential.				actin cytoskeleton reorganization|intracellular signal transduction	cell leading edge|cell-cell junction|cytoplasm	ATP binding|identical protein binding|magnesium ion binding|protein serine/threonine kinase activity|small GTPase regulator activity			lung(6)|breast(2)|stomach(1)|ovary(1)|pancreas(1)	11		all_cancers(173;0.156)|Prostate(94;0.0792)				TTTTTTATTTCATTTGCATGT	0.294000													11	115					0	0	1	0	0
OBSCN	84033	broad.mit.edu	37	1	228469878	228469878	+	Silent	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr1:228469878C>G	uc009xez.1	+	31	8486	c.8442C>G	c.(8440-8442)CTC>CTG	p.L2814L	OBSCN_uc001hsn.2_Silent_p.L2814L|OBSCN_uc001hsp.1_Silent_p.L513L|OBSCN_uc001hsq.1_Silent_p.L70L	NM_001098623	NP_001092093	Q5VST9	OBSCN_HUMAN	obscurin, cytoskeletal calmodulin and	2814	Ig-like 27.				apoptosis|cell differentiation|induction of apoptosis by extracellular signals|multicellular organismal development|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|M band|Z disc	ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity|protein tyrosine kinase activity|Rho guanyl-nucleotide exchange factor activity|structural constituent of muscle|titin binding			stomach(8)|large_intestine(7)|breast(5)|ovary(4)|skin(2)|central_nervous_system(1)|pancreas(1)	28		Prostate(94;0.0405)				TGCGGGGCCTCACCTCCAAGG	0.657000													4	56					0	0	1	0	0
TRIM17	51127	broad.mit.edu	37	1	228596276	228596276	+	Missense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr1:228596276C>G	uc001hsu.2	-	7	1445	c.1060G>C	c.(1060-1062)GAG>CAG	p.E354Q	TRIM11_uc001hss.2_5'Flank|TRIM11_uc010pvx.1_5'Flank|TRIM11_uc001hst.1_5'Flank|TRIM17_uc001hsv.2_Missense_Mutation_p.E354Q|TRIM17_uc001hsw.2_Missense_Mutation_p.E327Q	NM_016102	NP_057186	Q9Y577	TRI17_HUMAN	tripartite motif-containing 17 isoform 1	354	B30.2/SPRY.				protein autoubiquitination	intracellular	protein binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(1)	1		Prostate(94;0.0724)				ATGCCCACCTCCCAGTAGTGC	0.637000													23	148					0	0	1	0	0
TAF5L	27097	broad.mit.edu	37	1	229730242	229730242	+	Silent	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr1:229730242C>T	uc001htq.2	-	5	1738	c.1572G>A	c.(1570-1572)TTG>TTA	p.L524L		NM_014409	NP_055224	O75529	TAF5L_HUMAN	PCAF associated factor 65 beta isoform a	524	WD 6.				histone H3 acetylation|transcription from RNA polymerase II promoter	STAGA complex|transcription factor TFTC complex	sequence-specific DNA binding transcription factor activity|transcription coactivator activity			ovary(1)	1	Breast(184;0.193)|Ovarian(103;0.249)	Prostate(94;0.167)				CAGAGGCAATCAAGCCGCTGT	0.582000													14	87					0	0	1	0	0
PGBD5	79605	broad.mit.edu	37	1	230492790	230492790	+	Missense_Mutation	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr1:230492790C>T	uc010pwb.1	-	2	402	c.402G>A	c.(400-402)ATG>ATA	p.M134I	PGBD5_uc001htv.2_Missense_Mutation_p.M233I	NM_024554	NP_078830	Q8N414	PGBD5_HUMAN	piggyBac transposable element derived 5	134						integral to membrane				ovary(2)|central_nervous_system(1)|skin(1)	4	Breast(184;0.0397)	Prostate(94;0.167)		GBM - Glioblastoma multiforme(131;0.201)		GGGCCTGGCTCATGACGAGGG	0.622000													14	114					0	0	1	0	0
EXOC8	149371	broad.mit.edu	37	1	231472064	231472064	+	Missense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr1:231472064G>C	uc001huq.2	-	1	1515	c.1428C>G	c.(1426-1428)ATC>ATG	p.I476M		NM_175876	NP_787072	Q8IYI6	EXOC8_HUMAN	exocyst complex 84-kDa subunit	476					exocytosis|protein transport	growth cone|nucleus	protein binding			skin(1)	1	Breast(184;0.0871)	all_cancers(173;0.151)|Prostate(94;0.183)				CTGCAAAATCGATCTCAAATT	0.488000													17	49					0	0	1	0	0
EXOC8	149371	broad.mit.edu	37	1	231472148	231472148	+	Missense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr1:231472148G>C	uc001huq.2	-	1	1431	c.1344C>G	c.(1342-1344)ATC>ATG	p.I448M		NM_175876	NP_787072	Q8IYI6	EXOC8_HUMAN	exocyst complex 84-kDa subunit	448					exocytosis|protein transport	growth cone|nucleus	protein binding			skin(1)	1	Breast(184;0.0871)	all_cancers(173;0.151)|Prostate(94;0.183)				TGGCACCTTCGATGCGAAGCT	0.488000													17	76					0	0	1	0	0
DISC1	27185	broad.mit.edu	37	1	231830494	231830494	+	Silent	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr1:231830494C>T	uc001huz.2	+	2	1043	c.990C>T	c.(988-990)CTC>CTT	p.L330L	TSNAX-DISC1_uc010pwe.1_Silent_p.L285L|TSNAX-DISC1_uc010pwf.1_Silent_p.L285L|TSNAX-DISC1_uc010pwg.1_Silent_p.L319L|TSNAX-DISC1_uc010pwh.1_Silent_p.L285L|TSNAX-DISC1_uc010pwi.1_Silent_p.L285L|TSNAX-DISC1_uc010pwj.1_Silent_p.L319L|TSNAX-DISC1_uc010pwk.1_Silent_p.L319L|TSNAX-DISC1_uc010pwl.1_RNA|DISC1_uc010pwo.1_Silent_p.L330L|DISC1_uc010pwp.1_Silent_p.L330L|DISC1_uc010pwq.1_Silent_p.L330L|DISC1_uc010pwr.1_Silent_p.L330L|DISC1_uc010pws.1_Silent_p.L330L|DISC1_uc010pwt.1_Silent_p.L330L|DISC1_uc010pwu.1_Intron|DISC1_uc010pwv.1_RNA|DISC1_uc010pww.1_Silent_p.L330L|DISC1_uc010pwx.1_RNA|DISC1_uc010pwy.1_RNA|DISC1_uc010pwz.1_RNA|DISC1_uc010pxa.1_RNA|DISC1_uc001huy.2_Silent_p.L330L|DISC1_uc010pxb.1_Silent_p.L330L|DISC1_uc010pxc.1_Silent_p.L330L|DISC1_uc010pxd.1_5'UTR|DISC1_uc010pxe.1_Silent_p.L330L|DISC1_uc009xfr.2_Silent_p.L285L|DISC1_uc010pxf.1_Silent_p.L330L|DISC1_uc010pxg.1_Silent_p.L330L|DISC1_uc010pxh.1_Silent_p.L330L|DISC1_uc010pxi.1_RNA|DISC1_uc010pxj.1_5'UTR|DISC1_uc010pxk.1_RNA|DISC1_uc010pxl.1_RNA|DISC1_uc010pxm.1_Silent_p.L330L|DISC1_uc010pxn.1_5'UTR|DISC1_uc001hva.2_Silent_p.L330L|DISC1_uc010pwm.1_Silent_p.L330L|DISC1_uc001hux.1_Silent_p.L330L|DISC1_uc001hvc.3_Silent_p.L330L|DISC1_uc010pwn.1_Silent_p.L330L	NM_018662	NP_061132	Q9NRI5	DISC1_HUMAN	disrupted in schizophrenia 1 isoform L	330	Interaction with TRAF3IP1.				microtubule cytoskeleton organization|neuron migration|positive regulation of neuroblast proliferation|positive regulation of Wnt receptor signaling pathway|Wnt receptor signaling pathway	centrosome|microtubule	protein binding			skin(1)	1		all_cancers(173;0.0208)|Prostate(94;0.0975)				ACACCCTGCTCAGGAAATGGG	0.622000													21	110					0	0	1	0	0
PCNXL2	80003	broad.mit.edu	37	1	233394913	233394913	+	Missense_Mutation	SNP	C	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr1:233394913C>A	uc001hvl.2	-	5	930	c.695G>T	c.(694-696)GGA>GTA	p.G232V	PCNXL2_uc009xfu.2_RNA|PCNXL2_uc009xfv.1_RNA	NM_014801	NP_055616	A6NKB5	PCX2_HUMAN	pecanex-like 2	232						integral to membrane				central_nervous_system(1)|pancreas(1)	2		all_cancers(173;0.0347)|Prostate(94;0.137)				CCCCTTGCCTCCTCTTTCCTT	0.507000													34	239					1.30998e-17	1.36542e-17	1	1	0
LYST	1130	broad.mit.edu	37	1	235955247	235955247	+	Missense_Mutation	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr1:235955247G>A	uc001hxj.2	-	12	4470	c.4295C>T	c.(4294-4296)TCA>TTA	p.S1432L	LYST_uc009xgb.1_RNA|LYST_uc010pxs.1_Intron|LYST_uc001hxl.1_Missense_Mutation_p.S1432L	NM_000081	NP_000072	Q99698	LYST_HUMAN	lysosomal trafficking regulator	1432					defense response to bacterium|defense response to protozoan|defense response to virus|endosome to lysosome transport via multivesicular body sorting pathway|leukocyte chemotaxis|mast cell secretory granule organization|melanosome organization|natural killer cell mediated cytotoxicity|protein transport	cytoplasm|microtubule cytoskeleton	protein binding			ovary(6)|breast(4)|central_nervous_system(2)	12	Ovarian(103;0.0634)|Breast(184;0.23)	all_cancers(173;0.00246)|Prostate(94;0.0771)|Acute lymphoblastic leukemia(190;0.228)	OV - Ovarian serous cystadenocarcinoma(106;0.000674)			CTTGCTCCGTGAAACTCGTGC	0.478000									Chediak-Higashi_syndrome				48	309					0	0	1	0	0
RYR2	6262	broad.mit.edu	37	1	237754039	237754039	+	Missense_Mutation	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr1:237754039C>T	uc001hyl.1	+	31	4027	c.3907C>T	c.(3907-3909)CGC>TGC	p.R1303C		NM_001035	NP_001026	Q92736	RYR2_HUMAN	cardiac muscle ryanodine receptor	1303	Cytoplasmic (By similarity).|4 X approximate repeats.				cardiac muscle contraction|detection of calcium ion|induction of apoptosis by ionic changes|regulation of cardiac muscle contraction by regulation of the release of sequestered calcium ion|release of sequestered calcium ion into cytosol by sarcoplasmic reticulum|response to caffeine|response to hypoxia|response to redox state	calcium channel complex|cytosol|plasma membrane|plasma membrane enriched fraction|sarcoplasmic reticulum membrane	calcium ion binding|calmodulin binding|identical protein binding|protein kinase A catalytic subunit binding|protein kinase A regulatory subunit binding|receptor activity|ryanodine-sensitive calcium-release channel activity|suramin binding			ovary(17)|large_intestine(6)|central_nervous_system(6)|pancreas(3)|breast(1)	33	Ovarian(103;0.103)	all_cancers(173;0.000368)|Melanoma(53;0.0179)|all_epithelial(177;0.0225)	OV - Ovarian serous cystadenocarcinoma(106;0.00606)			CATGTTTTATCGCCTGAGCAT	0.522000													49	302					0	0	1	0	0
RYR2	6262	broad.mit.edu	37	1	237872193	237872193	+	Nonsense_Mutation	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr1:237872193C>T	uc001hyl.1	+	69	10057	c.9937C>T	c.(9937-9939)CAG>TAG	p.Q3313*	RYR2_uc010pxz.1_Nonsense_Mutation_p.Q268*	NM_001035	NP_001026	Q92736	RYR2_HUMAN	cardiac muscle ryanodine receptor	3313					cardiac muscle contraction|detection of calcium ion|induction of apoptosis by ionic changes|regulation of cardiac muscle contraction by regulation of the release of sequestered calcium ion|release of sequestered calcium ion into cytosol by sarcoplasmic reticulum|response to caffeine|response to hypoxia|response to redox state	calcium channel complex|cytosol|plasma membrane|plasma membrane enriched fraction|sarcoplasmic reticulum membrane	calcium ion binding|calmodulin binding|identical protein binding|protein kinase A catalytic subunit binding|protein kinase A regulatory subunit binding|receptor activity|ryanodine-sensitive calcium-release channel activity|suramin binding			ovary(17)|large_intestine(6)|central_nervous_system(6)|pancreas(3)|breast(1)	33	Ovarian(103;0.103)	all_cancers(173;0.000368)|Melanoma(53;0.0179)|all_epithelial(177;0.0225)	OV - Ovarian serous cystadenocarcinoma(106;0.00606)			AGTGAAACCTCAGCTCTTGAA	0.403000													6	32					0	0	1	0	0
ZP4	57829	broad.mit.edu	37	1	238048827	238048827	+	Missense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr1:238048827G>C	uc001hym.2	-	8	1024	c.1024C>G	c.(1024-1026)CTT>GTT	p.L342V	LOC100130331_uc010pyc.1_Intron	NM_021186	NP_067009	Q12836	ZP4_HUMAN	zona pellucida glycoprotein 4 preproprotein	342	ZP.|Extracellular (Potential).				acrosomal vesicle exocytosis|negative regulation of binding of sperm to zona pellucida|positive regulation of acrosome reaction|positive regulation of humoral immune response|positive regulation of protein kinase activity|positive regulation of T cell proliferation|protein kinase A signaling cascade|protein kinase C signaling cascade	integral to membrane|intracellular|plasma membrane|proteinaceous extracellular matrix	acrosin binding|receptor activity			ovary(2)|skin(1)	3	Ovarian(103;0.103)	all_cancers(173;0.00175)|all_epithelial(177;0.162)|all_neural(198;0.164)|Melanoma(53;0.211)|Prostate(94;0.214)	OV - Ovarian serous cystadenocarcinoma(106;0.00989)			GGATCCCGAAGCAACTTCACC	0.498000													27	109					0	0	1	0	0
ZP4	57829	broad.mit.edu	37	1	238053866	238053866	+	Missense_Mutation	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr1:238053866C>T	uc001hym.2	-	1	70	c.70G>A	c.(70-72)GAG>AAG	p.E24K	LOC100130331_uc010pyc.1_Intron	NM_021186	NP_067009	Q12836	ZP4_HUMAN	zona pellucida glycoprotein 4 preproprotein	24	Extracellular (Potential).				acrosomal vesicle exocytosis|negative regulation of binding of sperm to zona pellucida|positive regulation of acrosome reaction|positive regulation of humoral immune response|positive regulation of protein kinase activity|positive regulation of T cell proliferation|protein kinase A signaling cascade|protein kinase C signaling cascade	integral to membrane|intracellular|plasma membrane|proteinaceous extracellular matrix	acrosin binding|receptor activity			ovary(2)|skin(1)	3	Ovarian(103;0.103)	all_cancers(173;0.00175)|all_epithelial(177;0.162)|all_neural(198;0.164)|Melanoma(53;0.211)|Prostate(94;0.214)	OV - Ovarian serous cystadenocarcinoma(106;0.00989)			TCTGGTGCCTCAGGCTTATGC	0.532000													41	73					0	0	1	0	0
KMO	8564	broad.mit.edu	37	1	241714342	241714342	+	Nonsense_Mutation	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr1:241714342C>T	uc009xgp.2	+	4	375	c.310C>T	c.(310-312)CAG>TAG	p.Q104*	KMO_uc001hyy.2_Nonsense_Mutation_p.Q104*|KMO_uc009xgo.1_Nonsense_Mutation_p.Q104*	NM_003679	NP_003670	O15229	KMO_HUMAN	kynurenine 3-monooxygenase	104					pyridine nucleotide biosynthetic process|response to salt stress	cytosol|integral to membrane|mitochondrial outer membrane	electron carrier activity|flavin adenine dinucleotide binding|kynurenine 3-monooxygenase activity|NAD(P)H oxidase activity			ovary(2)	2	Ovarian(103;0.103)|all_lung(81;0.23)		OV - Ovarian serous cystadenocarcinoma(106;0.0176)			GACAAAGTCTCAGGTAGGTTT	0.443000													25	174					0	0	1	0	0
AKT3	10000	broad.mit.edu	37	1	243708851	243708851	+	Missense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr1:243708851G>C	uc001iab.1	-	11	1293	c.1212C>G	c.(1210-1212)TTC>TTG	p.F404L	AKT3_uc001hzz.1_Missense_Mutation_p.F404L	NM_005465	NP_005456	Q9Y243	AKT3_HUMAN	AKT3 kinase isoform 1	404	Protein kinase.				signal transduction	Golgi apparatus|nucleus|plasma membrane	ATP binding|protein binding|protein serine/threonine kinase activity			stomach(1)|lung(1)|breast(1)|central_nervous_system(1)	4	all_cancers(71;0.000307)|all_epithelial(71;0.000374)|all_lung(81;0.0323)|Ovarian(71;0.0619)|all_neural(11;0.101)|Lung NSC(105;0.168)	all_cancers(173;0.0274)	all cancers(7;4.3e-08)|GBM - Glioblastoma multiforme(7;5.12e-06)|OV - Ovarian serous cystadenocarcinoma(106;0.00196)			CTCCAGAGAAGAAACTGTGTC	0.318000													18	131					0	0	1	0	0
C1orf101	257044	broad.mit.edu	37	1	244735747	244735747	+	Silent	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr1:244735747C>T	uc001iam.2	+	11	1682	c.1623C>T	c.(1621-1623)TTC>TTT	p.F541F	C1orf101_uc001iak.1_Silent_p.F95F|C1orf101_uc001ial.2_Silent_p.F541F|C1orf101_uc010pym.1_Silent_p.F390F|C1orf101_uc010pyn.1_Silent_p.F474F	NM_001130957	NP_001124429	Q5SY80	CA101_HUMAN	hypothetical protein LOC257044 isoform 1	541	Extracellular (Potential).					integral to membrane				ovary(1)|breast(1)	2	all_cancers(71;2.99e-05)|all_epithelial(71;0.00015)|all_neural(11;0.0269)|Breast(184;0.0654)|Glioma(6;0.0724)|Ovarian(71;0.0761)|all_lung(81;0.0874)|Lung NSC(105;0.121)		all cancers(7;1.22e-05)|OV - Ovarian serous cystadenocarcinoma(106;0.001)|GBM - Glioblastoma multiforme(7;0.0154)			CAAGAGCATTCATTTTCTTAA	0.318000													20	109					0	0	1	0	0
AHCTF1	25909	broad.mit.edu	37	1	247014269	247014269	+	Missense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr1:247014269C>G	uc001ibu.1	-	32	5046	c.5039G>C	c.(5038-5040)AGA>ACA	p.R1680T	AHCTF1_uc001ibv.1_Missense_Mutation_p.R1689T|AHCTF1_uc009xgs.1_Missense_Mutation_p.R541T|AHCTF1_uc001ibw.1_RNA	NM_015446	NP_056261	Q8WYP5	ELYS_HUMAN	transcription factor ELYS	1680	Mediates transcriptional activity (By similarity).|Necessary for nuclear localization (By similarity).				cytokinesis|mitotic prometaphase|mRNA transport|nuclear pore complex assembly|protein transport|transmembrane transport	condensed chromosome kinetochore|cytosol|nuclear matrix|nuclear membrane|nuclear pore|nucleoplasm	DNA binding			ovary(5)|skin(2)	7	all_cancers(71;3.05e-05)|all_epithelial(71;6.72e-06)|Ovarian(71;0.0173)|Breast(184;0.0318)|all_lung(81;0.0458)|Lung NSC(105;0.0518)	all_cancers(173;0.0266)	OV - Ovarian serous cystadenocarcinoma(106;0.00271)			TTCTTTACTTCTTGTGTCTTT	0.333000													3	223					0	0	1	0	0
AHCTF1	25909	broad.mit.edu	37	1	247024261	247024261	+	Missense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr1:247024261C>G	uc001ibu.1	-	28	4079	c.4072G>C	c.(4072-4074)GAT>CAT	p.D1358H	AHCTF1_uc001ibv.1_Missense_Mutation_p.D1367H|AHCTF1_uc009xgs.1_Missense_Mutation_p.D219H|AHCTF1_uc001ibw.1_RNA	NM_015446	NP_056261	Q8WYP5	ELYS_HUMAN	transcription factor ELYS	1358	Necessary for nuclear localization (By similarity).				cytokinesis|mitotic prometaphase|mRNA transport|nuclear pore complex assembly|protein transport|transmembrane transport	condensed chromosome kinetochore|cytosol|nuclear matrix|nuclear membrane|nuclear pore|nucleoplasm	DNA binding			ovary(5)|skin(2)	7	all_cancers(71;3.05e-05)|all_epithelial(71;6.72e-06)|Ovarian(71;0.0173)|Breast(184;0.0318)|all_lung(81;0.0458)|Lung NSC(105;0.0518)	all_cancers(173;0.0266)	OV - Ovarian serous cystadenocarcinoma(106;0.00271)			TTATCTCCATCCTTTTCAGTT	0.388000													21	162					0	0	1	0	0
AHCTF1	25909	broad.mit.edu	37	1	247063499	247063499	+	Missense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr1:247063499C>G	uc001ibu.1	-	9	1307	c.1300G>C	c.(1300-1302)GAG>CAG	p.E434Q	AHCTF1_uc001ibv.1_Missense_Mutation_p.E443Q|AHCTF1_uc009xgs.1_5'Flank	NM_015446	NP_056261	Q8WYP5	ELYS_HUMAN	transcription factor ELYS	434	Necessary for cytoplasmic localization (By similarity).				cytokinesis|mitotic prometaphase|mRNA transport|nuclear pore complex assembly|protein transport|transmembrane transport	condensed chromosome kinetochore|cytosol|nuclear matrix|nuclear membrane|nuclear pore|nucleoplasm	DNA binding			ovary(5)|skin(2)	7	all_cancers(71;3.05e-05)|all_epithelial(71;6.72e-06)|Ovarian(71;0.0173)|Breast(184;0.0318)|all_lung(81;0.0458)|Lung NSC(105;0.0518)	all_cancers(173;0.0266)	OV - Ovarian serous cystadenocarcinoma(106;0.00271)			ACAACAGACTCCAATGACCAC	0.373000													44	250					0	0	1	0	0
ZNF496	84838	broad.mit.edu	37	1	247473064	247473064	+	Missense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr1:247473064C>G	uc001ico.2	-	7	1294	c.829G>C	c.(829-831)GAG>CAG	p.E277Q	ZNF496_uc009xgv.2_Missense_Mutation_p.E313Q|ZNF496_uc001icp.2_Missense_Mutation_p.E277Q|ZNF496_uc001icq.1_Missense_Mutation_p.E52Q	NM_032752	NP_116141	Q96IT1	ZN496_HUMAN	zinc finger protein 496	277	KRAB.				positive regulation of transcription, DNA-dependent|viral reproduction		DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)|central_nervous_system(1)	2	all_cancers(71;0.000136)|all_epithelial(71;2.62e-05)|Breast(184;0.0226)|Ovarian(71;0.0377)|all_lung(81;0.0607)|Lung NSC(105;0.0661)		OV - Ovarian serous cystadenocarcinoma(106;0.00703)			ACGCGTGGCTCATTCTCCTCT	0.512000													14	138					0	0	1	0	0
Unknown	0	broad.mit.edu	37	1	247902718	247902718	+	IGR	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr1:247902718C>G								OR6F1 (26661 upstream) : OR1C1 (18048 downstream)																							ACCTTCTATTCTAGACTTGCT	0.443000													4	93					0	0	1	0	0
OR2L3	391192	broad.mit.edu	37	1	248224130	248224130	+	Missense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr1:248224130C>G	uc001idx.1	+	1	147	c.147C>G	c.(145-147)TTC>TTG	p.F49L	OR2L13_uc001ids.2_Intron	NM_001004687	NP_001004687	Q8NG85	OR2L3_HUMAN	olfactory receptor, family 2, subfamily L,	49	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	all_cancers(71;0.000149)|all_epithelial(71;1.27e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0278)			TTCTCATCTTCTTGGACACCC	0.418000													9	865					0	0	1	0	0
OR2T2	401992	broad.mit.edu	37	1	248616299	248616299	+	Silent	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr1:248616299C>G	uc001iek.1	+	1	201	c.201C>G	c.(199-201)CTC>CTG	p.L67L		NM_001004136	NP_001004136	Q6IF00	OR2T2_HUMAN	olfactory receptor, family 2, subfamily T,	67	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1	all_cancers(71;0.000108)|all_epithelial(71;1.03e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0265)			TCAGCCAGCTCTCCATCATGG	0.517000													30	151					0	0	1	0	0
OR2G6	391211	broad.mit.edu	37	1	248685098	248685098	+	Missense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr1:248685098C>G	uc001ien.1	+	1	151	c.151C>G	c.(151-153)CTG>GTG	p.L51V		NM_001013355	NP_001013373	Q5TZ20	OR2G6_HUMAN	olfactory receptor, family 2, subfamily G,	51	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(1)	3	all_cancers(71;0.000108)|all_epithelial(71;1.03e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)	all_cancers(173;0.0156)	OV - Ovarian serous cystadenocarcinoma(106;0.0265)			AGTATGTTGTCTGGACTCCAG	0.483000													20	154					0	0	1	0	0
PITRM1	10531	broad.mit.edu	37	10	3199698	3199698	+	Missense_Mutation	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr10:3199698C>T	uc010qah.1	-	11	1212	c.1180G>A	c.(1180-1182)GAG>AAG	p.E394K	PITRM1_uc001igr.1_Missense_Mutation_p.E426K|PITRM1_uc001igt.1_Missense_Mutation_p.E426K|PITRM1_uc009xhv.1_5'UTR|PITRM1_uc001igu.1_Missense_Mutation_p.E418K|PITRM1_uc010qai.1_Missense_Mutation_p.E397K|PITRM1_uc001igw.1_Missense_Mutation_p.E426K			E7ES23	E7ES23_HUMAN	SubName: Full=cDNA FLJ54065, moderately similar to Mus musculus pitrilysin metallepetidase 1 (Pitrm1), mRNA;	394					proteolysis		metalloendopeptidase activity|zinc ion binding			pancreas(1)	1						AGTAAAGCCTCAATTCGATCA	0.259000													4	26					0	0	1	0	0
IL15RA	3601	broad.mit.edu	37	10	6002384	6002384	+	Missense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr10:6002384G>C	uc001iiv.2	-	4	611	c.529C>G	c.(529-531)CAG>GAG	p.Q177E	IL15RA_uc001iiu.2_Missense_Mutation_p.Q25E|IL15RA_uc010qau.1_Missense_Mutation_p.Q144E|IL15RA_uc001iiw.2_Missense_Mutation_p.Q141E|IL15RA_uc001iix.2_Missense_Mutation_p.Q108E|IL15RA_uc001iiy.2_Missense_Mutation_p.Q25E	NM_002189	NP_002180	Q13261	I15RA_HUMAN	interleukin 15 receptor, alpha isoform 1	177	Extracellular (Potential).				cell proliferation	cytoplasmic vesicle membrane|endoplasmic reticulum membrane|extracellular space|Golgi membrane|integral to membrane|nuclear membrane	cytokine receptor activity				0						GCTGTTGTCTGAGAGGGGGTG	0.582000													36	177					0	0	1	0	0
RBM17	84991	broad.mit.edu	37	10	6154309	6154309	+	Missense_Mutation	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr10:6154309G>A	uc001ijb.2	+	8	1067	c.841G>A	c.(841-843)GAC>AAC	p.D281N	RBM17_uc010qav.1_Missense_Mutation_p.D281N|RBM17_uc001ijc.2_5'Flank	NM_032905	NP_116294	Q96I25	SPF45_HUMAN	RNA binding motif protein 17	281	G-patch.				mRNA processing|RNA splicing	spliceosomal complex	nucleotide binding|protein binding|RNA binding				0						CATCGTGGGCGACGCCACAGA	0.597000													7	41					0	0	1	0	0
FAM171A1	221061	broad.mit.edu	37	10	15255395	15255395	+	Missense_Mutation	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr10:15255395C>T	uc001iob.2	-	8	2199	c.2192G>A	c.(2191-2193)GGA>GAA	p.G731E		NM_001010924	NP_001010924	Q5VUB5	F1711_HUMAN	hypothetical protein LOC221061 precursor	731	Cytoplasmic (Potential).					integral to membrane				ovary(2)|breast(1)|skin(1)	4						TCCGTTCCTTCCAGCTCTTTG	0.537000													22	136					0	0	1	0	0
ITGA8	8516	broad.mit.edu	37	10	15649732	15649732	+	Missense_Mutation	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr10:15649732G>A	uc001ioc.1	-	17	1708	c.1708C>T	c.(1708-1710)CTT>TTT	p.L570F	ITGA8_uc010qcb.1_Missense_Mutation_p.L555F	NM_003638	NP_003629	P53708	ITA8_HUMAN	integrin, alpha 8 precursor	570	Extracellular (Potential).				cell differentiation|cell-cell adhesion|cell-matrix adhesion|integrin-mediated signaling pathway|nervous system development	integrin complex	receptor activity			ovary(3)|lung(3)	6						TTTATCACAAGAGGGAAGACG	0.453000													5	243					0	0	1	0	0
PTPLA	9200	broad.mit.edu	37	10	17636383	17636383	+	Splice_Site	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr10:17636383C>T	uc001ipg.2	-	6	641	c.606_splice	c.e6-1	p.R202_splice		NM_014241	NP_055056	B0YJ81	HACD1_HUMAN	protein tyrosine phosphatase-like, member A						fatty acid biosynthetic process|multicellular organismal development|signal transduction	endoplasmic reticulum membrane|integral to membrane	lyase activity|protein tyrosine phosphatase activity			central_nervous_system(1)|skin(1)	2						AAAATTATATCTGGAGAAAGA	0.313000													17	59					0	0	1	0	0
MLLT10	8028	broad.mit.edu	37	10	22021945	22021945	+	Missense_Mutation	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr10:22021945C>T	uc001iqs.2	+	19	2732	c.2384C>T	c.(2383-2385)TCA>TTA	p.S795L	MLLT10_uc001iqt.2_Missense_Mutation_p.S779L|MLLT10_uc001iqv.2_RNA|MLLT10_uc001iqy.2_Missense_Mutation_p.S779L|MLLT10_uc001ira.2_Missense_Mutation_p.S236L|MLLT10_uc001irb.2_RNA	NM_004641	NP_004632	P55197	AF10_HUMAN	myeloid/lymphoid or mixed-lineage leukemia	795	Transactivation domain.				positive regulation of transcription from RNA polymerase II promoter	cytoplasm|nucleus	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			lung(1)|skin(1)	2						GCACAGCTTTCAGTGCCTTTT	0.358000			T	MLL|PICALM|CDK6	AL								25	59					0	0	1	0	0
DNAJC1	64215	broad.mit.edu	37	10	22048443	22048443	+	Missense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr10:22048443C>G	uc001irc.2	-	11	1539	c.1252G>C	c.(1252-1254)GAG>CAG	p.E418Q	DNAJC1_uc001ird.2_Missense_Mutation_p.E304Q	NM_022365	NP_071760	Q96KC8	DNJC1_HUMAN	DnaJ (Hsp40) homolog, subfamily C, member 1	418	Cytoplasmic (By similarity).				negative regulation of proteolysis|regulation of protein secretion|regulation of transcription, DNA-dependent	endoplasmic reticulum membrane|integral to membrane|microsome|nuclear membrane	ATPase activator activity|DNA binding|heat shock protein binding|unfolded protein binding			lung(1)	1		Breast(68;0.00869)|Prostate(175;0.0181)|Lung SC(717;0.0262)				GCCACCCCCTCTGCGTCCTCT	0.632000													18	59					0	0	1	0	0
BMI1	648	broad.mit.edu	37	10	22618232	22618232	+	Missense_Mutation	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr10:22618232G>A	uc001irh.2	+	10	1381	c.742G>A	c.(742-744)GAA>AAA	p.E248K	BMI1_uc009xkg.2_Missense_Mutation_p.E391K	NM_005180	NP_005171	P35226	BMI1_HUMAN	BMI1 polycomb ring finger oncogene	248					hemopoiesis|negative regulation of transcription from RNA polymerase II promoter|positive regulation of fibroblast proliferation|positive regulation of ubiquitin-protein ligase activity|segment specification|transcription, DNA-dependent	cytoplasm|nucleolus|PcG protein complex|ubiquitin ligase complex	RING-like zinc finger domain binding|zinc ion binding			ovary(1)|skin(1)	2						AAATGCTGGAGAACTGGAAAG	0.478000													17	90					0	0	1	0	0
THNSL1	79896	broad.mit.edu	37	10	25313422	25313422	+	Missense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr10:25313422C>G	uc001isi.3	+	3	1599	c.1270C>G	c.(1270-1272)CAG>GAG	p.Q424E	ENKUR_uc001ish.1_Intron	NM_024838	NP_079114	Q8IYQ7	THNS1_HUMAN	threonine synthase-like 1	424					threonine biosynthetic process		ATP binding|pyridoxal phosphate binding|shikimate kinase activity|threonine synthase activity			pancreas(1)	1					L-Threonine(DB00156)|Pyridoxal Phosphate(DB00114)	AATTGGCAGTCAGAGAGAAAA	0.348000													34	90					0	0	1	0	0
ANKRD26	22852	broad.mit.edu	37	10	27301817	27301817	+	Missense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr10:27301817C>G	uc001ith.2	-	32	5116	c.4944G>C	c.(4942-4944)TTG>TTC	p.L1648F	ANKRD26_uc001itg.2_Missense_Mutation_p.L1335F|ANKRD26_uc009xku.1_Missense_Mutation_p.L1649F	NM_014915	NP_055730	Q9UPS8	ANR26_HUMAN	ankyrin repeat domain 26	1648	Potential.					centrosome				large_intestine(1)|haematopoietic_and_lymphoid_tissue(1)|ovary(1)|skin(1)	4						TAACCTTGCTCAAGTAGTTCT	0.259000													38	91					0	0	1	0	0
MASTL	84930	broad.mit.edu	37	10	27454084	27454084	+	Silent	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr10:27454084C>T	uc001itm.2	+	5	1284	c.645C>T	c.(643-645)ATC>ATT	p.I215I	MASTL_uc001itl.2_Silent_p.I215I|MASTL_uc009xkw.1_Silent_p.I215I|MASTL_uc009xkx.1_RNA	NM_032844	NP_116233	Q96GX5	GWL_HUMAN	microtubule associated serine/threonine	215	Protein kinase.				cell division|G2/M transition of mitotic cell cycle|mitosis|negative regulation of protein phosphatase type 2A activity|regulation of cell cycle|response to DNA damage stimulus	centrosome|cleavage furrow|nucleus	ATP binding|protein phosphatase 2A binding|protein serine/threonine kinase activity			stomach(1)|ovary(1)|lung(1)	3						TATCGCTTATCAGCTCGTTGG	0.333000													17	46					0	0	1	0	0
ARMC4	55130	broad.mit.edu	37	10	28283895	28283895	+	Nonsense_Mutation	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr10:28283895C>T	uc009xky.2	-	2	275	c.177G>A	c.(175-177)TGG>TGA	p.W59*	ARMC4_uc001itz.2_Nonsense_Mutation_p.W59*	NM_018076	NP_060546	Q5T2S8	ARMC4_HUMAN	armadillo repeat containing 4	59							binding			ovary(4)|skin(2)	6						AACTTGTGTTCCATTCAAGTG	0.353000													9	45					0	0	1	0	0
LYZL1	84569	broad.mit.edu	37	10	29578116	29578116	+	Missense_Mutation	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr10:29578116G>A	uc001iul.2	+	1	127	c.70G>A	c.(70-72)GAG>AAG	p.E24K		NM_032517	NP_115906	Q6UWQ5	LYZL1_HUMAN	lysozyme-like 1	Error:Variant_position_missing_in_Q6UWQ5_after_alignment					cell wall macromolecule catabolic process	extracellular region	lysozyme activity				0		Breast(68;0.203)				AGACTCAACTGAGAAGTCAGC	0.517000													13	72					0	0	1	0	0
MAP3K8	1326	broad.mit.edu	37	10	30748220	30748220	+	Missense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr10:30748220G>C	uc001ivi.1	+	8	1759	c.1063G>C	c.(1063-1065)GAT>CAT	p.D355H	MAP3K8_uc009xlf.1_Missense_Mutation_p.D355H|MAP3K8_uc001ivj.1_Missense_Mutation_p.D355H	NM_005204	NP_005195	P41279	M3K8_HUMAN	mitogen-activated protein kinase kinase kinase	355	Protein kinase.				cell cycle|T cell costimulation	cytosol	ATP binding|magnesium ion binding|MAP kinase kinase kinase activity|protein binding			breast(3)|central_nervous_system(1)	4		Prostate(175;0.151)				AGACATTGCAGATGACTGCAG	0.498000													21	76					0	0	1	0	0
C10orf68	79741	broad.mit.edu	37	10	33137547	33137547	+	Missense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr10:33137547G>C	uc001iwn.3	+	19	1998	c.1525G>C	c.(1525-1527)GAT>CAT	p.D509H	C10orf68_uc001iwl.1_Missense_Mutation_p.D468H|C10orf68_uc001iwm.1_Missense_Mutation_p.D513H|C10orf68_uc010qei.1_Missense_Mutation_p.D485H|C10orf68_uc001iwo.3_RNA	NM_024688	NP_078964	Q9H943	CJ068_HUMAN	chromosome 10 open reading frame 68	509										skin(2)|ovary(1)	3						TAAAAACAAAGATATGTCCGT	0.313000													10	67					0	0	1	0	0
ALOX5	240	broad.mit.edu	37	10	45924146	45924146	+	Silent	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr10:45924146C>T	uc001jce.2	+	7	1014	c.915C>T	c.(913-915)TTC>TTT	p.F305F	ALOX5_uc009xmt.2_Silent_p.F305F|ALOX5_uc010qfg.1_Silent_p.F305F	NM_000698	NP_000689	P09917	LOX5_HUMAN	arachidonate 5-lipoxygenase	305	Lipoxygenase.				hormone biosynthetic process|leukotriene biosynthetic process|prostanoid metabolic process	cytosol|nuclear envelope lumen|nuclear matrix|nuclear membrane	arachidonate 5-lipoxygenase activity|iron ion binding|lipoxygenase activity|protein binding			ovary(1)|pancreas(1)	2		Lung SC(717;0.0257)			Diethylcarbamazine(DB00711)|Hydrocortisone(DB00741)|Leflunomide(DB01097)|Masoprocol(DB00179)|Meclofenamic acid(DB00939)|Minocycline(DB01017)|Montelukast(DB00471)|Quinacrine(DB01103)|Vitamin E(DB00163)|Zileuton(DB00744)	CACTCCAGTTCCTGGCCGCTC	0.552000													22	52					0	0	1	0	0
RBP3	5949	broad.mit.edu	37	10	48390628	48390628	+	Missense_Mutation	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr10:48390628C>T	uc001jez.2	-	1	364	c.250G>A	c.(250-252)GAT>AAT	p.D84N		NM_002900	NP_002891	P10745	RET3_HUMAN	retinol-binding protein 3 precursor	84	4 X approximate tandem repeats.|1.				lipid metabolic process|proteolysis|transport|visual perception	interphotoreceptor matrix	retinal binding|serine-type peptidase activity			large_intestine(1)|central_nervous_system(1)	2					Vitamin A(DB00162)	AGGCGAGGATCGTTCAGGGAG	0.617000													35	109					0	0	1	0	0
OGDHL	55753	broad.mit.edu	37	10	50952795	50952795	+	Missense_Mutation	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr10:50952795C>T	uc001jie.2	-	13	1775	c.1633G>A	c.(1633-1635)GAA>AAA	p.E545K	OGDHL_uc009xog.2_Missense_Mutation_p.E572K|OGDHL_uc010qgt.1_Missense_Mutation_p.E488K|OGDHL_uc010qgu.1_Missense_Mutation_p.E336K|OGDHL_uc009xoh.2_Missense_Mutation_p.E336K	NM_018245	NP_060715	Q9ULD0	OGDHL_HUMAN	oxoglutarate dehydrogenase-like isoform a	545					glycolysis	mitochondrial matrix	oxoglutarate dehydrogenase (succinyl-transferring) activity|thiamine pyrophosphate binding			pancreas(1)	1						TTGGCAATTTCTTCCTGGAAT	0.532000													16	77					0	0	1	0	0
PCDH15	65217	broad.mit.edu	37	10	55698580	55698580	+	Nonsense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr10:55698580G>C	uc001jju.1	-	25	3763	c.3368C>G	c.(3367-3369)TCA>TGA	p.S1123*	PCDH15_uc010qhq.1_Nonsense_Mutation_p.S1128*|PCDH15_uc010qhr.1_Nonsense_Mutation_p.S1123*|PCDH15_uc010qhs.1_Nonsense_Mutation_p.S1135*|PCDH15_uc010qht.1_Nonsense_Mutation_p.S1130*|PCDH15_uc010qhu.1_Nonsense_Mutation_p.S1123*|PCDH15_uc001jjv.1_Intron|PCDH15_uc010qhv.1_Nonsense_Mutation_p.S1123*|PCDH15_uc010qhw.1_Nonsense_Mutation_p.S1086*|PCDH15_uc010qhx.1_Nonsense_Mutation_p.S1052*|PCDH15_uc010qhy.1_Nonsense_Mutation_p.S1128*|PCDH15_uc010qhz.1_Nonsense_Mutation_p.S1123*|PCDH15_uc010qia.1_Nonsense_Mutation_p.S1101*|PCDH15_uc010qib.1_Nonsense_Mutation_p.S1101*	NM_033056	NP_149045	Q96QU1	PCD15_HUMAN	protocadherin 15 isoform CD1-4 precursor	1123	Cadherin 10.|Extracellular (Potential).				equilibrioception|homophilic cell adhesion|photoreceptor cell maintenance|sensory perception of sound	extracellular region|extracellular space|integral to membrane|photoreceptor outer segment|plasma membrane|stereocilium|synapse	calcium ion binding			pancreas(5)|ovary(4)|upper_aerodigestive_tract(2)|skin(2)	13		Melanoma(3;0.117)|Lung SC(717;0.238)				CTTACTTTTTGAAGGAACTCG	0.378000										HNSCC(58;0.16)			19	91					0	0	1	0	0
PCDH15	65217	broad.mit.edu	37	10	55955586	55955586	+	Missense_Mutation	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr10:55955586C>T	uc001jju.1	-	11	1557	c.1162G>A	c.(1162-1164)GAA>AAA	p.E388K	PCDH15_uc010qhq.1_Missense_Mutation_p.E393K|PCDH15_uc010qhr.1_Missense_Mutation_p.E388K|PCDH15_uc010qhs.1_Missense_Mutation_p.E393K|PCDH15_uc010qht.1_Missense_Mutation_p.E388K|PCDH15_uc010qhu.1_Missense_Mutation_p.E388K|PCDH15_uc001jjv.1_Missense_Mutation_p.E366K|PCDH15_uc010qhv.1_Missense_Mutation_p.E388K|PCDH15_uc010qhw.1_Missense_Mutation_p.E351K|PCDH15_uc010qhx.1_Missense_Mutation_p.E388K|PCDH15_uc010qhy.1_Missense_Mutation_p.E393K|PCDH15_uc010qhz.1_Missense_Mutation_p.E388K|PCDH15_uc010qia.1_Missense_Mutation_p.E366K|PCDH15_uc010qib.1_Missense_Mutation_p.E366K|PCDH15_uc001jjw.2_Missense_Mutation_p.E388K	NM_033056	NP_149045	Q96QU1	PCD15_HUMAN	protocadherin 15 isoform CD1-4 precursor	388	Cadherin 3.|Extracellular (Potential).				equilibrioception|homophilic cell adhesion|photoreceptor cell maintenance|sensory perception of sound	extracellular region|extracellular space|integral to membrane|photoreceptor outer segment|plasma membrane|stereocilium|synapse	calcium ion binding			pancreas(5)|ovary(4)|upper_aerodigestive_tract(2)|skin(2)	13		Melanoma(3;0.117)|Lung SC(717;0.238)				TGATTGTTTTCATCCAGTATT	0.388000										HNSCC(58;0.16)			22	106					0	0	1	0	0
LRRTM3	347731	broad.mit.edu	37	10	68687469	68687469	+	Missense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr10:68687469C>G	uc001jmz.1	+	2	1345	c.795C>G	c.(793-795)ATC>ATG	p.I265M	CTNNA3_uc009xpn.1_Intron|CTNNA3_uc001jmw.2_Intron|CTNNA3_uc001jmx.3_Intron|CTNNA3_uc009xpo.1_Intron|LRRTM3_uc001jmy.2_Missense_Mutation_p.I265M	NM_178011	NP_821079	Q86VH5	LRRT3_HUMAN	leucine rich repeat transmembrane neuronal 3	265	Extracellular (Potential).|LRR 9.					integral to membrane				upper_aerodigestive_tract(1)|ovary(1)|skin(1)	3						GCAATGAGATCGAAGCTTTCA	0.458000													4	206					0	0	1	0	0
CCAR1	55749	broad.mit.edu	37	10	70532748	70532748	+	Missense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr10:70532748G>C	uc001joo.2	+	19	2661	c.2542G>C	c.(2542-2544)GAA>CAA	p.E848Q	CCAR1_uc010qiz.1_Missense_Mutation_p.E833Q|CCAR1_uc010qjb.1_RNA	NM_018237	NP_060707	Q8IX12	CCAR1_HUMAN	cell-cycle and apoptosis regulatory protein 1	848	Glu-rich.				apoptosis|cell cycle|nuclear mRNA splicing, via spliceosome|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleoplasm|perinuclear region of cytoplasm	calcium ion binding|nucleic acid binding|protein binding			ovary(6)|large_intestine(1)	7						ATTATAGAAAGAAGATAAAAG	0.194000													10	25					0	0	1	0	0
DDX50	79009	broad.mit.edu	37	10	70661201	70661201	+	Missense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr10:70661201G>C	uc001jou.2	+	1	168	c.61G>C	c.(61-63)GAG>CAG	p.E21Q	DDX50_uc001jot.2_Missense_Mutation_p.E21Q|DDX50_uc010qjc.1_Missense_Mutation_p.E21Q	NM_024045	NP_076950	Q9BQ39	DDX50_HUMAN	nucleolar protein GU2	21						nucleolus	ATP binding|ATP-dependent helicase activity|RNA binding			ovary(1)	1						GGAGGAGTCCGAGAGCCAGAA	0.647000													2	2					0	0	1	0	0
DDIT4	54541	broad.mit.edu	37	10	74034053	74034053	+	Missense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr10:74034053G>C	uc001jsx.1	+	2	281	c.79G>C	c.(79-81)GAT>CAT	p.D27H		NM_019058	NP_061931	Q9NX09	DDIT4_HUMAN	RTP801	27					apoptosis					pancreas(1)	1						TCCCACCCCAGATCGGCCGCC	0.692000													24	109					0	0	1	0	0
USP54	159195	broad.mit.edu	37	10	75276292	75276292	+	Missense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr10:75276292C>G	uc001juo.2	-	18	3909	c.3892G>C	c.(3892-3894)GAG>CAG	p.E1298Q	USP54_uc010qkk.1_Missense_Mutation_p.E480Q|USP54_uc001juk.2_Missense_Mutation_p.E386Q|USP54_uc001jul.2_Missense_Mutation_p.E386Q|USP54_uc001jum.2_RNA|USP54_uc001jun.2_RNA	NM_152586	NP_689799	Q70EL1	UBP54_HUMAN	ubiquitin specific peptidase 54	1298					ubiquitin-dependent protein catabolic process		protein binding|ubiquitin thiolesterase activity			breast(3)|lung(2)|kidney(1)	6	Prostate(51;0.0112)					TGATTTCTCTCTGGATAGGTT	0.478000													9	155					0	0	1	0	0
KIAA0913	23053	broad.mit.edu	37	10	75553453	75553453	+	Silent	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr10:75553453C>T	uc009xrl.2	+	11	2453	c.2421C>T	c.(2419-2421)CTC>CTT	p.L807L	KIAA0913_uc001jve.2_Silent_p.L807L|KIAA0913_uc001jvf.2_Silent_p.L807L|KIAA0913_uc001jvh.2_RNA|KIAA0913_uc001jvi.2_Silent_p.L230L|KIAA0913_uc010qkr.1_Silent_p.L230L|KIAA0913_uc001jvj.2_Silent_p.L230L	NM_015037	NP_055852	A7E2V4	K0913_HUMAN	hypothetical protein LOC23053	807							zinc ion binding			breast(1)	1	Prostate(51;0.0112)					CACCCGACCTCAAGGTAGAGC	0.632000													23	51					0	0	1	0	0
NDST2	8509	broad.mit.edu	37	10	75568002	75568002	+	Missense_Mutation	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr10:75568002G>A	uc001jvk.2	-	3	949	c.145C>T	c.(145-147)CCC>TCC	p.P49S	NDST2_uc010qks.1_5'Flank|NDST2_uc010qkt.1_Intron|NDST2_uc009xro.2_5'Flank|NDST2_uc010qku.1_5'Flank	NM_003635	NP_003626	P52849	NDST2_HUMAN	heparan glucosaminyl	49	Lumenal (Potential).|Heparan sulfate N-deacetylase 2.					Golgi membrane|integral to membrane	[heparan sulfate]-glucosamine N-sulfotransferase activity|hydrolase activity			ovary(1)	1	Prostate(51;0.0112)					AAGGGCAGGGGCAAGGGTTCC	0.647000													3	19					0	0	1	0	0
MYST4	23522	broad.mit.edu	37	10	76788623	76788623	+	Silent	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr10:76788623C>T	uc001jwn.1	+	18	4534	c.4041C>T	c.(4039-4041)CTC>CTT	p.L1347L	MYST4_uc001jwo.1_Silent_p.L1055L|MYST4_uc001jwp.1_Silent_p.L1164L	NM_012330	NP_036462	Q8WYB5	MYST4_HUMAN	MYST histone acetyltransferase (monocytic	1347					histone H3 acetylation|negative regulation of transcription, DNA-dependent|nucleosome assembly|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	MOZ/MORF histone acetyltransferase complex|nucleosome	DNA binding|histone acetyltransferase activity|transcription factor binding|zinc ion binding			central_nervous_system(5)|ovary(4)|lung(3)|breast(2)|skin(1)|prostate(1)	16	all_cancers(46;0.0347)|all_epithelial(25;0.00236)|Prostate(51;0.0112)|Ovarian(15;0.0964)					AAGATGATCTCATCAAACCTg	0.259000			T	CREBBP	AML								17	45					0	0	1	0	0
VDAC2	7417	broad.mit.edu	37	10	76979068	76979068	+	Nonsense_Mutation	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr10:76979068C>T	uc001jwz.2	+	6	469	c.310C>T	c.(310-312)CAA>TAA	p.Q104*	VDAC2_uc010qld.1_Nonsense_Mutation_p.Q65*|VDAC2_uc001jxa.2_Nonsense_Mutation_p.Q119*|VDAC2_uc010qle.1_Nonsense_Mutation_p.Q65*	NM_003375	NP_003366	P45880	VDAC2_HUMAN	voltage-dependent anion channel 2	104						mitochondrial nucleoid|mitochondrial outer membrane|pore complex	nucleotide binding|porin activity|protein binding|voltage-gated anion channel activity			pancreas(2)|ovary(1)	3	all_cancers(46;0.0642)|all_epithelial(25;0.00604)|Prostate(51;0.0112)|Ovarian(15;0.183)				Dihydroxyaluminium(DB01375)	ATAGATTTGTCAAGGTTTGAA	0.239000													11	28					0	0	1	0	0
KCNMA1	3778	broad.mit.edu	37	10	78778781	78778781	+	Missense_Mutation	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr10:78778781C>T	uc001jxn.2	-	17	2182	c.2005G>A	c.(2005-2007)GAA>AAA	p.E669K	KCNMA1_uc001jxj.2_Missense_Mutation_p.E673K|KCNMA1_uc001jxk.1_Missense_Mutation_p.E284K|KCNMA1_uc009xrt.1_Missense_Mutation_p.E489K|KCNMA1_uc001jxl.1_Missense_Mutation_p.E323K|KCNMA1_uc001jxo.2_Missense_Mutation_p.E669K|KCNMA1_uc001jxm.2_Missense_Mutation_p.E669K|KCNMA1_uc001jxq.2_Missense_Mutation_p.E669K	NM_001161352	NP_001154824	Q12791	KCMA1_HUMAN	large conductance calcium-activated potassium	669	Cytoplasmic (Potential).				cellular potassium ion homeostasis|negative regulation of cell volume|platelet activation|positive regulation of apoptosis|regulation of membrane potential|response to calcium ion|response to carbon monoxide|response to hypoxia|response to osmotic stress|smooth muscle contraction involved in micturition	apical plasma membrane|caveola|integral to membrane|voltage-gated potassium channel complex	actin binding|calcium-activated potassium channel activity|large conductance calcium-activated potassium channel activity|metal ion binding|voltage-gated potassium channel activity			pancreas(2)|ovary(1)	3	all_cancers(46;0.203)|all_epithelial(25;0.00604)|Prostate(51;0.0198)		OV - Ovarian serous cystadenocarcinoma(4;0.0586)|Epithelial(14;0.081)|all cancers(16;0.183)		Bendroflumethiazide(DB00436)|Benzthiazide(DB00562)|Chlorothiazide(DB00880)|Chlorzoxazone(DB00356)|Cromoglicate(DB01003)|Cyclothiazide(DB00606)|Diazoxide(DB01119)|Enflurane(DB00228)|Hydrochlorothiazide(DB00999)|Hydroflumethiazide(DB00774)|Methyclothiazide(DB00232)|Quinethazone(DB01325)|Trichlormethiazide(DB01021)	CTTTTAACTTCTTTGGCATCA	0.403000													3	69					0	0	1	0	0
GRID1	2894	broad.mit.edu	37	10	87484191	87484191	+	Missense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr10:87484191C>G	uc001kdl.1	-	11	1877	c.1776G>C	c.(1774-1776)CAG>CAC	p.Q592H	GRID1_uc009xsu.1_RNA|GRID1_uc010qmf.1_Missense_Mutation_p.Q163H	NM_017551	NP_060021	Q9ULK0	GRID1_HUMAN	glutamate receptor, ionotropic, delta 1	592	Cytoplasmic (Potential).					cell junction|integral to membrane|outer membrane-bounded periplasmic space|postsynaptic membrane	extracellular-glutamate-gated ion channel activity|ionotropic glutamate receptor activity			ovary(5)|upper_aerodigestive_tract(2)|large_intestine(2)|central_nervous_system(1)	10					L-Glutamic Acid(DB00142)	GGGCAGCACTCTGAGCCCTCA	0.547000										Multiple Myeloma(13;0.14)			15	48					0	0	1	0	0
FAM22A	728118	broad.mit.edu	37	10	88994238	88994238	+	Missense_Mutation	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr10:88994238G>A	uc001kek.2	+	7	2793	c.2410G>A	c.(2410-2412)GAG>AAG	p.E804K	LOC728190_uc009xtc.2_Intron|LOC728190_uc009xtd.2_Intron	NM_001099338	NP_001092808	Q8IVF1	FA22A_HUMAN	hypothetical protein LOC728118	804											0						CCCATCTGCTGAGAGAAGAGG	0.602000													12	50					0	0	1	0	0
LIPF	8513	broad.mit.edu	37	10	90427329	90427329	+	Nonsense_Mutation	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr10:90427329C>T	uc001kfg.1	+	3	275	c.109C>T	c.(109-111)CAG>TAG	p.Q37*	LIPF_uc009xtk.2_Nonsense_Mutation_p.Q37*|LIPF_uc001kfh.1_Nonsense_Mutation_p.Q47*|LIPF_uc010qmt.1_Nonsense_Mutation_p.Q47*|LIPF_uc010qmu.1_Nonsense_Mutation_p.Q37*	NM_004190	NP_004181	P07098	LIPG_HUMAN	lipase, gastric precursor	37					lipid catabolic process|triglyceride metabolic process	extracellular region	lipid binding|triglyceride lipase activity				0		Colorectal(252;0.0161)		Colorectal(12;3.91e-05)|COAD - Colon adenocarcinoma(12;5.43e-05)		TCCTCAGAGTCAGATGATTAC	0.274000													28	92					0	0	1	0	0
ANKRD22	118932	broad.mit.edu	37	10	90611348	90611348	+	Missense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr10:90611348G>C	uc001kfj.3	-	1	385	c.17C>G	c.(16-18)TCT>TGT	p.S6C		NM_144590	NP_653191	Q5VYY1	ANR22_HUMAN	ankyrin repeat domain 22	6											0		Colorectal(252;0.0163)		Colorectal(12;6.29e-05)|COAD - Colon adenocarcinoma(12;7.69e-05)		ATGTACCTCAGAGTATAGGAT	0.383000													30	110					0	0	1	0	0
BTAF1	9044	broad.mit.edu	37	10	93749226	93749226	+	Missense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr10:93749226C>G	uc001khr.2	+	20	2841	c.2743C>G	c.(2743-2745)CCC>GCC	p.P915A	BTAF1_uc001khs.1_Missense_Mutation_p.P585A|BTAF1_uc001kht.1_Missense_Mutation_p.P353A	NM_003972	NP_003963	O14981	BTAF1_HUMAN	BTAF1 RNA polymerase II, B-TFIID transcription	915					negative regulation of transcription, DNA-dependent	nucleus	ATP binding|DNA binding|helicase activity|sequence-specific DNA binding transcription factor activity			ovary(1)|central_nervous_system(1)|skin(1)	3		Colorectal(252;0.0846)				GACGCCCTGTCCCAATTCAAA	0.418000													26	72					0	0	1	0	0
EXOC6	54536	broad.mit.edu	37	10	94700547	94700547	+	Missense_Mutation	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr10:94700547G>A	uc001kig.2	+	13	1342	c.1276G>A	c.(1276-1278)GAA>AAA	p.E426K	EXOC6_uc010qnr.1_Missense_Mutation_p.E442K|EXOC6_uc001kie.2_Missense_Mutation_p.E421K|EXOC6_uc009xub.2_Missense_Mutation_p.E426K|EXOC6_uc009xuc.2_Missense_Mutation_p.E323K|EXOC6_uc001kih.2_RNA	NM_019053	NP_061926	Q8TAG9	EXOC6_HUMAN	SEC15-like 1 isoform a	426					protein transport|vesicle docking involved in exocytosis	exocyst				skin(1)	1		Colorectal(252;0.123)				CCAATACAATGAAACACTGCT	0.323000													11	60					0	0	1	0	0
CYP2C9	1559	broad.mit.edu	37	10	96702004	96702004	+	Missense_Mutation	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr10:96702004G>A	uc001kka.3	+	3	412	c.387G>A	c.(385-387)ATG>ATA	p.M129I	CYP2C9_uc009xut.2_Missense_Mutation_p.M129I|CYP2C9_uc001kjz.2_Missense_Mutation_p.M129I	NM_000771	NP_000762	P11712	CP2C9_HUMAN	cytochrome P450, family 2, subfamily C,	129					exogenous drug catabolic process|monocarboxylic acid metabolic process|monoterpenoid metabolic process|oxidative demethylation|steroid metabolic process|urea metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	(S)-limonene 6-monooxygenase activity|(S)-limonene 7-monooxygenase activity|4-hydroxyacetophenone monooxygenase activity|caffeine oxidase activity|drug binding|electron carrier activity|heme binding|oxygen binding|steroid hydroxylase activity			skin(4)|ovary(2)	6		Colorectal(252;0.0902)		all cancers(201;6.93e-05)	Acenocoumarol(DB01418)|Alosetron(DB00969)|Amiodarone(DB01118)|Antihemophilic Factor(DB00025)|Aprepitant(DB00673)|Bosentan(DB00559)|Carprofen(DB00821)|Carvedilol(DB01136)|Celecoxib(DB00482)|Clomipramine(DB01242)|Dapsone(DB00250)|Delavirdine(DB00705)|Desloratadine(DB00967)|Desogestrel(DB00304)|Diclofenac(DB00586)|Esomeprazole(DB00736)|Etodolac(DB00749)|Fluconazole(DB00196)|Fluoxetine(DB00472)|Flurbiprofen(DB00712)|Fluvastatin(DB01095)|Fluvoxamine(DB00176)|Formoterol(DB00983)|Gemfibrozil(DB01241)|Ginkgo biloba(DB01381)|Glibenclamide(DB01016)|Glimepiride(DB00222)|Glipizide(DB01067)|Guanfacine(DB01018)|Hydromorphone(DB00327)|Ibuprofen(DB01050)|Imipramine(DB00458)|Irbesartan(DB01029)|Ketoconazole(DB01026)|Lansoprazole(DB00448)|Losartan(DB00678)|Lumiracoxib(DB01283)|Marinol(DB00470)|Mefenamic acid(DB00784)|Meloxicam(DB00814)|Mephenytoin(DB00532)|Metronidazole(DB00916)|Miconazole(DB01110)|Midazolam(DB00683)|Montelukast(DB00471)|Nateglinide(DB00731)|Nelfinavir(DB00220)|Nicardipine(DB00622)|Oxymorphone(DB01192)|Pantoprazole(DB00213)|Paramethadione(DB00617)|Phenprocoumon(DB00946)|Phenytoin(DB00252)|Pravastatin(DB00175)|Quinidine(DB00908)|Ritonavir(DB00503)|Rosiglitazone(DB00412)|Sertraline(DB01104)|Sildenafil(DB00203)|Sulfamethoxazole(DB01015)|Suprofen(DB00870)|Tamoxifen(DB00675)|Tenoxicam(DB00469)|Terfenadine(DB00342)|Tolbutamide(DB01124)|Torasemide(DB00214)|Troleandomycin(DB01361)|Valdecoxib(DB00580)|Valsartan(DB00177)|Voriconazole(DB00582)|Warfarin(DB00682)|Zafirlukast(DB00549)|Zileuton(DB00744)	TCTCCCTCATGACGCTGCGGA	0.507000													29	136					0	0	1	0	0
SORBS1	10580	broad.mit.edu	37	10	97174291	97174291	+	Missense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr10:97174291C>G	uc001kkp.2	-	7	815	c.770G>C	c.(769-771)AGA>ACA	p.R257T	SORBS1_uc001kkl.2_5'UTR|SORBS1_uc001kkn.2_Intron|SORBS1_uc001kkm.2_Intron|SORBS1_uc001kko.2_Missense_Mutation_p.R257T|SORBS1_uc001kkq.2_Missense_Mutation_p.R188T|SORBS1_uc001kkr.2_Intron|SORBS1_uc001kks.2_Intron|SORBS1_uc001kkt.2_RNA|SORBS1_uc001kku.2_Intron|SORBS1_uc001kkv.2_Missense_Mutation_p.R225T|SORBS1_uc001kkw.2_Missense_Mutation_p.R257T|SORBS1_uc010qoe.1_Intron|SORBS1_uc010qof.1_Missense_Mutation_p.R455T|SORBS1_uc001kkx.1_Missense_Mutation_p.R225T	NM_001034954	NP_001030126	Q9BX66	SRBS1_HUMAN	sorbin and SH3 domain containing 1 isoform 3	257					focal adhesion assembly|glucose transport|insulin receptor signaling pathway|muscle contraction|positive regulation of establishment of protein localization in plasma membrane|positive regulation of glucose import|positive regulation of glycogen biosynthetic process|positive regulation of lipid biosynthetic process|stress fiber assembly	centrosome|cytosol|focal adhesion|membrane raft|nucleus|stress fiber|zonula adherens	actin binding|insulin receptor binding|SH3/SH2 adaptor activity			breast(1)	1		Colorectal(252;0.0429)		Epithelial(162;1.7e-06)|all cancers(201;6.52e-05)		CTCCGAGACTCTGCGGAGGTC	0.632000													20	51					0	0	1	0	0
PIK3AP1	118788	broad.mit.edu	37	10	98405365	98405365	+	Nonsense_Mutation	SNP	C	A	A	rs35933944		TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr10:98405365C>A	uc001kmq.2	-	8	1368	c.1240G>T	c.(1240-1242)GAG>TAG	p.E414*	PIK3AP1_uc001kmp.2_Nonsense_Mutation_p.E236*	NM_152309	NP_689522	Q6ZUJ8	BCAP_HUMAN	phosphoinositide-3-kinase adaptor protein 1	414						cytoplasm|plasma membrane				upper_aerodigestive_tract(3)|ovary(1)|skin(1)	5		Colorectal(252;0.0442)		Epithelial(162;6.29e-08)|all cancers(201;3.18e-06)		GCATCAGCCTCCTCCCCGTGC	0.547000													27	95					2.4375e-19	2.54449e-19	1	1	0
RRP12	23223	broad.mit.edu	37	10	99160214	99160214	+	Missense_Mutation	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr10:99160214C>T	uc001knf.2	-	2	356	c.217G>A	c.(217-219)GAA>AAA	p.E73K	RRP12_uc010qou.1_Missense_Mutation_p.E73K|RRP12_uc009xvn.2_Missense_Mutation_p.E73K	NM_015179	NP_055994	Q5JTH9	RRP12_HUMAN	ribosomal RNA processing 12 homolog isoform 1	73						integral to membrane|nuclear membrane|nucleolus	protein binding			ovary(2)|central_nervous_system(1)	3		Colorectal(252;0.162)		Epithelial(162;2.72e-09)|all cancers(201;1.76e-07)		TCCGGGGCTTCGCTTTTGCCC	0.562000													38	141					0	0	1	0	0
ENTPD7	57089	broad.mit.edu	37	10	101464287	101464287	+	Missense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr10:101464287C>G	uc001kqa.3	+	13	1840	c.1662C>G	c.(1660-1662)TTC>TTG	p.F554L	ENTPD7_uc009xwl.2_Missense_Mutation_p.F556L	NM_020354	NP_065087	Q9NQZ7	ENTP7_HUMAN	ectonucleoside triphosphate diphosphohydrolase	554	Helical; (Potential).					cytoplasmic vesicle membrane|integral to membrane	hydrolase activity			ovary(1)	1		Colorectal(252;0.234)		Epithelial(162;4.72e-10)|all cancers(201;3.75e-08)		ACTATCTCTTCTTTGCCTGTA	0.507000													37	97					0	0	1	0	0
DNMBP	23268	broad.mit.edu	37	10	101639882	101639882	+	Nonsense_Mutation	SNP	C	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr10:101639882C>A	uc001kqj.2	-	16	4326	c.4234G>T	c.(4234-4236)GAA>TAA	p.E1412*	DNMBP_uc010qpl.1_Nonsense_Mutation_p.E348*|DNMBP_uc001kqg.2_Nonsense_Mutation_p.E700*|DNMBP_uc001kqh.2_Nonsense_Mutation_p.E1044*	NM_015221	NP_056036	Q6XZF7	DNMBP_HUMAN	dynamin binding protein	1412	Ser-rich.				intracellular signal transduction|regulation of Rho protein signal transduction	cell junction|cytoskeleton|Golgi stack|synapse	protein binding|Rho guanyl-nucleotide exchange factor activity			ovary(5)|skin(1)	6		Colorectal(252;0.234)		Epithelial(162;2.94e-10)|all cancers(201;3.15e-08)		TGGTCACATTCTTTTGGCGGA	0.547000													6	223					0.000274275	0.000278584	1	1	0
DNMBP	23268	broad.mit.edu	37	10	101643851	101643851	+	Nonsense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr10:101643851G>C	uc001kqj.2	-	15	4006	c.3914C>G	c.(3913-3915)TCA>TGA	p.S1305*	DNMBP_uc010qpl.1_Nonsense_Mutation_p.S241*|DNMBP_uc001kqg.2_Nonsense_Mutation_p.S593*|DNMBP_uc001kqh.2_Nonsense_Mutation_p.S937*	NM_015221	NP_056036	Q6XZF7	DNMBP_HUMAN	dynamin binding protein	1305	SH3 5.				intracellular signal transduction|regulation of Rho protein signal transduction	cell junction|cytoskeleton|Golgi stack|synapse	protein binding|Rho guanyl-nucleotide exchange factor activity			ovary(5)|skin(1)	6		Colorectal(252;0.234)		Epithelial(162;2.94e-10)|all cancers(201;3.15e-08)		TTCCAAAAGTGAGACATCCAA	0.507000													3	139					0	0	1	0	0
DNMBP	23268	broad.mit.edu	37	10	101715662	101715662	+	Missense_Mutation	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr10:101715662C>T	uc001kqj.2	-	4	1661	c.1569G>A	c.(1567-1569)ATG>ATA	p.M523I	NCRNA00093_uc001kqk.1_Intron	NM_015221	NP_056036	Q6XZF7	DNMBP_HUMAN	dynamin binding protein	523					intracellular signal transduction|regulation of Rho protein signal transduction	cell junction|cytoskeleton|Golgi stack|synapse	protein binding|Rho guanyl-nucleotide exchange factor activity			ovary(5)|skin(1)	6		Colorectal(252;0.234)		Epithelial(162;2.94e-10)|all cancers(201;3.15e-08)		GACCAGGCTTCATCTCCAATC	0.502000													41	143					0	0	1	0	0
DNMBP	23268	broad.mit.edu	37	10	101716192	101716192	+	Missense_Mutation	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr10:101716192C>T	uc001kqj.2	-	4	1131	c.1039G>A	c.(1039-1041)GAG>AAG	p.E347K	NCRNA00093_uc001kqk.1_Intron	NM_015221	NP_056036	Q6XZF7	DNMBP_HUMAN	dynamin binding protein	347					intracellular signal transduction|regulation of Rho protein signal transduction	cell junction|cytoskeleton|Golgi stack|synapse	protein binding|Rho guanyl-nucleotide exchange factor activity			ovary(5)|skin(1)	6		Colorectal(252;0.234)		Epithelial(162;2.94e-10)|all cancers(201;3.15e-08)		TCAGGCTCCTCGGCCTCATGG	0.498000													20	68					0	0	1	0	0
CPN1	1369	broad.mit.edu	37	10	101808556	101808556	+	Missense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr10:101808556C>G	uc001kql.2	-	8	1449	c.1189G>C	c.(1189-1191)GAG>CAG	p.E397Q		NM_001308	NP_001299	P15169	CBPN_HUMAN	carboxypeptidase N, polypeptide 1 precursor	397					proteolysis	extracellular space	metallocarboxypeptidase activity|zinc ion binding			central_nervous_system(3)|pancreas(1)	4		Colorectal(252;0.234)		Epithelial(162;4.77e-10)|all cancers(201;3.82e-08)		GTTACTGTCTCTGGGTCATAC	0.478000													40	133					0	0	1	0	0
SEMA4G	57715	broad.mit.edu	37	10	102740947	102740947	+	Missense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr10:102740947G>C	uc001krw.1	+	13	2050	c.1666G>C	c.(1666-1668)GAG>CAG	p.E556Q	SEMA4G_uc001krv.2_RNA|SEMA4G_uc001krx.2_Missense_Mutation_p.E556Q|MRPL43_uc001kry.1_Intron|MRPL43_uc010qpu.1_Intron	NM_017893	NP_060363	Q9NTN9	SEM4G_HUMAN	semaphorin 4G	551	Extracellular (Potential).|PSI.				cell differentiation|nervous system development	integral to membrane	receptor activity			breast(1)	1		Colorectal(252;0.234)		Epithelial(162;3.71e-09)|all cancers(201;2.1e-07)		ACAGGACATAGAGAGAGGAAA	0.478000													3	70					0	0	1	0	0
PPRC1	23082	broad.mit.edu	37	10	103907125	103907125	+	Missense_Mutation	SNP	C	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr10:103907125C>A	uc001kum.2	+	9	4415	c.4376C>A	c.(4375-4377)TCC>TAC	p.S1459Y	PPRC1_uc001kun.2_Missense_Mutation_p.S1339Y|PPRC1_uc010qqj.1_Intron|PPRC1_uc009xxa.2_Intron	NM_015062	NP_055877	Q5VV67	PPRC1_HUMAN	peroxisome proliferator-activated receptor	1459	Arg-rich.|Ser-rich.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	nucleotide binding|RNA binding			ovary(1)|central_nervous_system(1)|skin(1)	3		Colorectal(252;0.122)		Epithelial(162;4.97e-08)|all cancers(201;8.99e-07)		AGGTCCCTCTCCCCCCCACAC	0.527000													30	87					1.62565e-12	1.68595e-12	1	1	0
NOLC1	9221	broad.mit.edu	37	10	103916809	103916809	+	Missense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr10:103916809G>C	uc001kuo.2	+	2	389	c.154G>C	c.(154-156)GAC>CAC	p.D52H	NOLC1_uc001kup.2_Missense_Mutation_p.D52H|NOLC1_uc001kuq.2_Missense_Mutation_p.D52H|NOLC1_uc009xxb.1_5'UTR|NOLC1_uc001kur.2_Intron	NM_004741	NP_004732	Q14978	NOLC1_HUMAN	nucleolar and coiled-body phosphoprotein 1	52					mitosis|rRNA processing	cytoplasm|nucleolus	ATP binding|GTP binding|protein binding			ovary(1)	1		Colorectal(252;0.122)		Epithelial(162;5.19e-08)|all cancers(201;9.43e-07)		TTCCCTCTTAGACATCTATAG	0.433000													70	255					0	0	1	0	0
PSD	5662	broad.mit.edu	37	10	104176175	104176175	+	Missense_Mutation	SNP	G	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr10:104176175G>T	uc001kvg.1	-	2	1148	c.621C>A	c.(619-621)TTC>TTA	p.F207L	PSD_uc001kvh.1_5'UTR|PSD_uc009xxd.1_Missense_Mutation_p.F207L|PSD_uc001kvi.1_Missense_Mutation_p.F207L|FBXL15_uc001kvj.1_5'Flank	NM_002779	NP_002770	A5PKW4	PSD1_HUMAN	pleckstrin and Sec7 domain containing	207					regulation of ARF protein signal transduction	cytoplasm|plasma membrane|ruffle	ARF guanyl-nucleotide exchange factor activity|signal transducer activity			breast(2)|urinary_tract(1)	3				Epithelial(162;1.27e-08)|all cancers(201;2.85e-07)		CAGGTCCTCCGAAGAGTGTGG	0.647000													4	12					0.000602214	0.000610476	1	1	0
NT5C2	22978	broad.mit.edu	37	10	104859772	104859772	+	Missense_Mutation	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr10:104859772C>T	uc001kwo.2	-	9	730	c.544G>A	c.(544-546)GAA>AAA	p.E182K	NT5C2_uc010qqp.1_Missense_Mutation_p.E153K|NT5C2_uc001kwq.2_Missense_Mutation_p.E182K|NT5C2_uc001kwp.2_Missense_Mutation_p.E29K	NM_012229	NP_036361	P49902	5NTC_HUMAN	5'-nucleotidase, cytosolic II	182					purine base metabolic process|purine nucleotide catabolic process	cytosol	5'-nucleotidase activity|metal ion binding|nucleotide binding|protein binding				0		all_hematologic(284;0.176)|Colorectal(252;0.178)		Epithelial(162;1.33e-08)|all cancers(201;1.04e-07)|BRCA - Breast invasive adenocarcinoma(275;0.159)	Adenosine triphosphate(DB00171)|Ribavirin(DB00811)	AATCCTGTTTCACAACTACAG	0.398000													31	87					0	0	1	0	0
SORCS1	114815	broad.mit.edu	37	10	108716280	108716280	+	Missense_Mutation	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr10:108716280G>A	uc001kym.2	-	2	625	c.617C>T	c.(616-618)TCG>TTG	p.S206L	SORCS1_uc001kyl.2_Missense_Mutation_p.S206L|SORCS1_uc009xxs.2_Missense_Mutation_p.S206L|SORCS1_uc001kyn.1_Missense_Mutation_p.S206L|SORCS1_uc001kyo.2_Missense_Mutation_p.S206L	NM_052918	NP_443150	Q8WY21	SORC1_HUMAN	SORCS receptor 1 isoform a	206	Lumenal (Potential).					integral to membrane	neuropeptide receptor activity|protein binding			breast(1)|central_nervous_system(1)	2		Breast(234;0.0256)|Colorectal(252;0.09)|Lung NSC(174;0.168)		Epithelial(162;1.66e-05)|all cancers(201;0.000689)		CCTCCAAAGCGAGCTCTCTGT	0.418000													8	62					0	0	1	0	0
ADRA2A	150	broad.mit.edu	37	10	112838144	112838144	+	Silent	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr10:112838144C>G	uc001kzo.2	+	1	1355	c.390C>G	c.(388-390)CTC>CTG	p.L130L		NM_000681	NP_000672	P08913	ADA2A_HUMAN	alpha-2A-adrenergic receptor	115	Helical; Name=3; (By similarity).				actin cytoskeleton organization|activation of MAPK activity by adrenergic receptor signaling pathway|activation of phospholipase C activity by adrenergic receptor signaling pathway|activation of protein kinase B activity|blood coagulation|cellular component movement|cellular response to hormone stimulus|energy reserve metabolic process|epidermal growth factor receptor transactivation by G-protein coupled receptor signaling pathway|glucose homeostasis|inhibition of adenylate cyclase activity by adrenergic receptor signaling pathway|intestinal absorption|negative regulation of adrenergic receptor signaling pathway|negative regulation of calcium ion transport via voltage-gated calcium channel activity|negative regulation of cAMP biosynthetic process|negative regulation of epinephrine secretion|negative regulation of insulin secretion involved in cellular response to glucose stimulus|negative regulation of lipid catabolic process|negative regulation of norepinephrine secretion|positive regulation of cell migration|positive regulation of cell proliferation|positive regulation of cytokine production|positive regulation of membrane protein ectodomain proteolysis|positive regulation of potassium ion transport|positive regulation of wound healing|Rho protein signal transduction	basolateral plasma membrane|cytoplasm|integral to plasma membrane|receptor complex	alpha-1B adrenergic receptor binding|alpha-2C adrenergic receptor binding|alpha2-adrenergic receptor activity|epinephrine binding|heterotrimeric G-protein binding|norepinephrine binding|protein heterodimerization activity|protein homodimerization activity|protein kinase binding|thioesterase binding				0		Breast(234;0.0735)|Lung NSC(174;0.238)		Epithelial(162;0.000316)|all cancers(201;0.00501)|BRCA - Breast invasive adenocarcinoma(275;0.118)	Amitriptyline(DB00321)|Amphetamine(DB00182)|Apraclonidine(DB00964)|Benzphetamine(DB00865)|Bethanidine(DB00217)|Brimonidine(DB00484)|Clonidine(DB00575)|Debrisoquin(DB04840)|Dexmedetomidine(DB00633)|Dipivefrin(DB00449)|Epinastine(DB00751)|Ergotamine(DB00696)|Fenoldopam(DB00800)|Guanabenz(DB00629)|Guanadrel Sulfate(DB00226)|Guanethidine(DB01170)|Guanfacine(DB01018)|Lofexidine(DB04948)|Methyldopa(DB00968)|Mianserin(DB06148)|Mirtazapine(DB00370)|Norepinephrine(DB00368)|Oxymetazoline(DB00935)|Phentolamine(DB00692)|Phenylpropanolamine(DB00397)|Pseudoephedrine(DB00852)|Tizanidine(DB00697)|Trazodone(DB00656)|Yohimbine(DB01392)	TCGACGTGCTCTTCTGCACGT	0.622000													15	47					0	0	1	0	0
ADRA2A	150	broad.mit.edu	37	10	112839032	112839032	+	Silent	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr10:112839032C>T	uc001kzo.2	+	1	2243	c.1278C>T	c.(1276-1278)TTC>TTT	p.F426F		NM_000681	NP_000672	P08913	ADA2A_HUMAN	alpha-2A-adrenergic receptor	411	Helical; Name=7; (By similarity).				actin cytoskeleton organization|activation of MAPK activity by adrenergic receptor signaling pathway|activation of phospholipase C activity by adrenergic receptor signaling pathway|activation of protein kinase B activity|blood coagulation|cellular component movement|cellular response to hormone stimulus|energy reserve metabolic process|epidermal growth factor receptor transactivation by G-protein coupled receptor signaling pathway|glucose homeostasis|inhibition of adenylate cyclase activity by adrenergic receptor signaling pathway|intestinal absorption|negative regulation of adrenergic receptor signaling pathway|negative regulation of calcium ion transport via voltage-gated calcium channel activity|negative regulation of cAMP biosynthetic process|negative regulation of epinephrine secretion|negative regulation of insulin secretion involved in cellular response to glucose stimulus|negative regulation of lipid catabolic process|negative regulation of norepinephrine secretion|positive regulation of cell migration|positive regulation of cell proliferation|positive regulation of cytokine production|positive regulation of membrane protein ectodomain proteolysis|positive regulation of potassium ion transport|positive regulation of wound healing|Rho protein signal transduction	basolateral plasma membrane|cytoplasm|integral to plasma membrane|receptor complex	alpha-1B adrenergic receptor binding|alpha-2C adrenergic receptor binding|alpha2-adrenergic receptor activity|epinephrine binding|heterotrimeric G-protein binding|norepinephrine binding|protein heterodimerization activity|protein homodimerization activity|protein kinase binding|thioesterase binding				0		Breast(234;0.0735)|Lung NSC(174;0.238)		Epithelial(162;0.000316)|all cancers(201;0.00501)|BRCA - Breast invasive adenocarcinoma(275;0.118)	Amitriptyline(DB00321)|Amphetamine(DB00182)|Apraclonidine(DB00964)|Benzphetamine(DB00865)|Bethanidine(DB00217)|Brimonidine(DB00484)|Clonidine(DB00575)|Debrisoquin(DB04840)|Dexmedetomidine(DB00633)|Dipivefrin(DB00449)|Epinastine(DB00751)|Ergotamine(DB00696)|Fenoldopam(DB00800)|Guanabenz(DB00629)|Guanadrel Sulfate(DB00226)|Guanethidine(DB01170)|Guanfacine(DB01018)|Lofexidine(DB04948)|Methyldopa(DB00968)|Mianserin(DB06148)|Mirtazapine(DB00370)|Norepinephrine(DB00368)|Oxymetazoline(DB00935)|Phentolamine(DB00692)|Phenylpropanolamine(DB00397)|Pseudoephedrine(DB00852)|Tizanidine(DB00697)|Trazodone(DB00656)|Yohimbine(DB01392)	TCAAATTCTTCTTCTGGTTCG	0.572000													44	140					0	0	1	0	0
DCLRE1A	9937	broad.mit.edu	37	10	115602210	115602210	+	Missense_Mutation	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr10:115602210C>T	uc001law.2	-	6	3475	c.2557G>A	c.(2557-2559)GAG>AAG	p.E853K		NM_014881	NP_055696	Q6PJP8	DCR1A_HUMAN	DNA cross-link repair 1A	853					cell division|mitosis	nucleus	hydrolase activity			skin(2)	2				Epithelial(162;0.0157)|all cancers(201;0.0171)		CGGATAACCTCTTGCTGAGAT	0.413000								Direct_reversal_of_damage|Other_identified_genes_with_known_or_suspected_DNA_repair_function					50	181					0	0	1	0	0
VWA2	340706	broad.mit.edu	37	10	116048875	116048875	+	Silent	SNP	C	T	T	rs143465186		TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr10:116048875C>T	uc001lbl.1	+	12	2070	c.1749C>T	c.(1747-1749)TTC>TTT	p.F583F	VWA2_uc001lbk.1_Silent_p.F583F|VWA2_uc009xyf.1_Silent_p.F279F	NM_198496	NP_940898	Q5GFL6	VWA2_HUMAN	von Willebrand factor A domain containing 2	583	VWFA 3.					extracellular region				ovary(2)|large_intestine(1)|central_nervous_system(1)|skin(1)	5				Epithelial(162;0.036)|all cancers(201;0.0793)		AGACTGCCTTCGGGCTGGACA	0.647000													13	50					0	0	1	0	0
ATRNL1	26033	broad.mit.edu	37	10	117228797	117228797	+	Missense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr10:117228797C>G	uc001lcg.2	+	24	3998	c.3612C>G	c.(3610-3612)TTC>TTG	p.F1204L	ATRNL1_uc010qsm.1_Missense_Mutation_p.F333L|ATRNL1_uc010qsn.1_Intron	NM_207303	NP_997186	Q5VV63	ATRN1_HUMAN	attractin-like 1 precursor	1204	Extracellular (Potential).					integral to membrane	sugar binding			ovary(5)|lung(1)|central_nervous_system(1)	7		all_lung(145;0.0686)|Breast(234;0.0969)|Lung NSC(174;0.17)|Colorectal(252;0.234)		Epithelial(162;0.00031)|all cancers(201;0.000753)|LUSC - Lung squamous cell carcinoma(1;0.0515)|Lung(30;0.0827)		ACATTACATTCTATGTGTACG	0.303000													29	69					0	0	1	0	0
PNLIPRP3	119548	broad.mit.edu	37	10	118236174	118236174	+	Missense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr10:118236174G>C	uc001lcl.3	+	11	1284	c.1183G>C	c.(1183-1185)GAG>CAG	p.E395Q		NM_001011709	NP_001011709	Q17RR3	LIPR3_HUMAN	pancreatic lipase-related protein 3 precursor	395	PLAT.				lipid catabolic process	extracellular region	triglyceride lipase activity			ovary(1)	1				all cancers(201;0.0131)		TGGAAAACTTGAGCCAGGCAT	0.363000													28	97					0	0	1	0	0
RAB11FIP2	22841	broad.mit.edu	37	10	119805360	119805360	+	Silent	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr10:119805360G>C	uc001ldj.1	-	1	755	c.315C>G	c.(313-315)CTC>CTG	p.L105L	RAB11FIP2_uc009xyz.1_Silent_p.L105L|CASC2_uc001ldm.3_5'Flank|CASC2_uc009xzc.2_5'Flank|CASC2_uc001ldk.2_5'Flank|CASC2_uc009xza.2_5'Flank|CASC2_uc009xzb.2_5'Flank	NM_014904	NP_055719	Q7L804	RFIP2_HUMAN	RAB11 family interacting protein 2	105					protein transport	plasma membrane|recycling endosome membrane	protein homodimerization activity				0		Colorectal(252;0.235)		all cancers(201;0.0238)		AGATGTCATTGAGATTGATTG	0.348000													17	66					0	0	1	0	0
INPP5F	22876	broad.mit.edu	37	10	121569692	121569692	+	Silent	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr10:121569692C>G	uc001leo.2	+	14	1816	c.1650C>G	c.(1648-1650)CTC>CTG	p.L550L		NM_014937	NP_055752	Q9Y2H2	SAC2_HUMAN	inositol polyphosphate-5-phosphatase F	550							phosphoric ester hydrolase activity			ovary(2)	2		Lung NSC(174;0.109)|all_lung(145;0.142)		all cancers(201;0.00205)|BRCA - Breast invasive adenocarcinoma(275;0.158)		GATATTACCTCAACCGATTTA	0.363000													16	64					0	0	1	0	0
TACC2	10579	broad.mit.edu	37	10	123987460	123987460	+	Missense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr10:123987460G>C	uc001lfv.2	+	14	8193	c.7833G>C	c.(7831-7833)GAG>GAC	p.E2611D	TACC2_uc001lfw.2_Missense_Mutation_p.E757D|TACC2_uc009xzx.2_Missense_Mutation_p.E2566D|TACC2_uc010qtv.1_Missense_Mutation_p.E2615D|TACC2_uc001lfx.2_Missense_Mutation_p.E315D|TACC2_uc001lfy.2_Missense_Mutation_p.E311D|TACC2_uc001lfz.2_Missense_Mutation_p.E689D|TACC2_uc001lga.2_Missense_Mutation_p.E689D|TACC2_uc009xzy.2_Missense_Mutation_p.E701D|TACC2_uc001lgb.2_Missense_Mutation_p.E646D	NM_206862	NP_996744	O95359	TACC2_HUMAN	transforming, acidic coiled-coil containing	2611						microtubule organizing center|nucleus	nuclear hormone receptor binding			ovary(4)|breast(3)|skin(2)|central_nervous_system(1)	10		all_neural(114;0.0656)|Lung NSC(174;0.136)|all_lung(145;0.17)|Breast(234;0.197)				AGGTGCCAGAGAAATCCTCCC	0.552000													5	191					0	0	1	0	0
DMBT1	1755	broad.mit.edu	37	10	124348773	124348773	+	Silent	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr10:124348773C>T	uc001lgk.1	+	17	2203	c.2097C>T	c.(2095-2097)GTC>GTT	p.V699V	DMBT1_uc001lgl.1_Silent_p.V689V|DMBT1_uc001lgm.1_Intron|DMBT1_uc009xzz.1_Silent_p.V699V|DMBT1_uc010qtx.1_Intron|DMBT1_uc009yaa.1_Intron	NM_007329	NP_015568	Q9UGM3	DMBT1_HUMAN	deleted in malignant brain tumors 1 isoform b	699	SRCR 5.				epithelial cell differentiation|induction of bacterial agglutination|innate immune response|interspecies interaction between organisms|protein transport|response to virus	extrinsic to membrane|phagocytic vesicle membrane|zymogen granule membrane	calcium-dependent protein binding|Gram-negative bacterial cell surface binding|Gram-positive bacterial cell surface binding|pattern recognition receptor activity|scavenger receptor activity|zymogen binding			central_nervous_system(7)	7		all_neural(114;0.0765)|Lung NSC(174;0.132)|all_lung(145;0.163)|Breast(234;0.238)				ATGCTGGTGTCATCTGCTCAG	0.522000													26	73					0	0	1	0	0
DMBT1	1755	broad.mit.edu	37	10	124389473	124389473	+	Missense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr10:124389473C>G	uc001lgk.1	+	44	5505	c.5399C>G	c.(5398-5400)TCT>TGT	p.S1800C	DMBT1_uc001lgl.1_Missense_Mutation_p.S1790C|DMBT1_uc001lgm.1_Missense_Mutation_p.S1172C|DMBT1_uc009xzz.1_Missense_Mutation_p.S1800C|DMBT1_uc010qtx.1_Missense_Mutation_p.S520C|DMBT1_uc009yab.1_Missense_Mutation_p.S503C|DMBT1_uc009yac.1_Missense_Mutation_p.S94C	NM_007329	NP_015568	Q9UGM3	DMBT1_HUMAN	deleted in malignant brain tumors 1 isoform b	1800	CUB 1.				epithelial cell differentiation|induction of bacterial agglutination|innate immune response|interspecies interaction between organisms|protein transport|response to virus	extrinsic to membrane|phagocytic vesicle membrane|zymogen granule membrane	calcium-dependent protein binding|Gram-negative bacterial cell surface binding|Gram-positive bacterial cell surface binding|pattern recognition receptor activity|scavenger receptor activity|zymogen binding			central_nervous_system(7)	7		all_neural(114;0.0765)|Lung NSC(174;0.132)|all_lung(145;0.163)|Breast(234;0.238)				GAAGTGAATTCTGGTTATCGC	0.478000													5	205					0	0	1	0	0
FAM53B	9679	broad.mit.edu	37	10	126384767	126384767	+	Missense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr10:126384767C>G	uc001lhv.1	-	3	616	c.93G>C	c.(91-93)AAG>AAC	p.K31N	FAM53B_uc001lhu.1_Missense_Mutation_p.K31N|FAM53B_uc001lhw.2_Missense_Mutation_p.K31N	NM_014661	NP_055476	Q14153	FA53B_HUMAN	hypothetical protein LOC9679	31										ovary(1)|pancreas(1)	2		all_lung(145;0.0191)|Lung NSC(174;0.0301)|Colorectal(57;0.106)|all_neural(114;0.117)		COAD - Colon adenocarcinoma(40;0.141)|Colorectal(40;0.15)		CTTGACTCATCTTCTTTGGCG	0.448000													48	158					0	0	1	0	0
DHX32	55760	broad.mit.edu	37	10	127542656	127542656	+	Silent	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr10:127542656G>C	uc001ljf.1	-	4	1457	c.966C>G	c.(964-966)CTC>CTG	p.L322L	DHX32_uc001lje.1_5'UTR|DHX32_uc001ljg.1_Silent_p.L322L|DHX32_uc009yam.1_Intron	NM_018180	NP_060650	Q7L7V1	DHX32_HUMAN	DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 32	322						mitochondrion|nucleus	ATP binding|helicase activity			breast(2)|ovary(1)|lung(1)	4		all_lung(145;0.00751)|Lung NSC(174;0.0115)|Colorectal(57;0.0846)|all_neural(114;0.0936)				CTGTTTCATCGAGTGGCTTGA	0.388000													23	124					0	0	1	0	0
FANK1	92565	broad.mit.edu	37	10	127693572	127693572	+	Missense_Mutation	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr10:127693572G>A	uc001ljh.3	+	7	763	c.659G>A	c.(658-660)GGA>GAA	p.G220E	FANK1_uc009yan.2_Missense_Mutation_p.G246E|FANK1_uc001lji.2_Missense_Mutation_p.G214E	NM_145235	NP_660278	Q8TC84	FANK1_HUMAN	fibronectin type III and ankyrin repeat domains	220	ANK 4.					cytoplasm|nucleus				ovary(1)	1		all_lung(145;0.00752)|Lung NSC(174;0.0115)|Colorectal(57;0.0847)|all_neural(114;0.0936)				GCTGCAGATGGAGGCCACTGC	0.522000													42	109					0	0	1	0	0
TUBGCP2	10844	broad.mit.edu	37	10	135112976	135112976	+	Silent	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr10:135112976C>T	uc001lmg.1	-	4	768	c.411G>A	c.(409-411)CTG>CTA	p.L137L	TUBGCP2_uc010qvc.1_Silent_p.L137L|TUBGCP2_uc009ybk.1_Silent_p.L137L|TUBGCP2_uc010qvd.1_Silent_p.L7L|TUBGCP2_uc001lmh.1_RNA	NM_006659	NP_006650	Q9BSJ2	GCP2_HUMAN	tubulin, gamma complex associated protein 2	137					G2/M transition of mitotic cell cycle|microtubule nucleation|protein complex assembly	centrosome|cytoplasmic microtubule|cytosol|spindle pole	protein binding				0		all_cancers(35;1.14e-09)|all_epithelial(44;5.79e-08)|Lung NSC(174;0.00263)|all_lung(145;0.0039)|all_neural(114;0.0299)|Melanoma(40;0.123)|Colorectal(31;0.172)|Glioma(114;0.203)		OV - Ovarian serous cystadenocarcinoma(35;8.87e-06)|all cancers(32;8.98e-06)|Epithelial(32;1.15e-05)		GCTGCTTCCTCAGTTCCTCAA	0.622000													8	37					0	0	1	0	0
NLRP6	171389	broad.mit.edu	37	11	281025	281025	+	Missense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr11:281025C>G	uc010qvs.1	+	4	1291	c.1291C>G	c.(1291-1293)CCG>GCG	p.P431A	NLRP6_uc010qvt.1_Missense_Mutation_p.P431A	NM_138329	NP_612202	P59044	NALP6_HUMAN	NLR family, pyrin domain containing 6	431	NACHT.					cytoplasm	ATP binding			upper_aerodigestive_tract(1)|skin(1)	2		all_cancers(49;1.12e-06)|all_epithelial(84;0.000375)|Breast(177;0.00122)|Ovarian(85;0.0228)|Medulloblastoma(188;0.0321)|all_neural(188;0.0762)		all cancers(45;4.28e-28)|Epithelial(43;2.47e-27)|OV - Ovarian serous cystadenocarcinoma(40;4.66e-21)|BRCA - Breast invasive adenocarcinoma(625;3.57e-05)|Lung(200;0.0485)|LUSC - Lung squamous cell carcinoma(625;0.122)		GAGCTCGGCTCCGGTAGCCGA	0.682000													6	155					0	0	1	0	0
SIGIRR	59307	broad.mit.edu	37	11	406528	406528	+	Missense_Mutation	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr11:406528G>A	uc001lpd.2	-	9	1220	c.890C>T	c.(889-891)TCC>TTC	p.S297F	SIGIRR_uc001lpf.2_Missense_Mutation_p.S297F|SIGIRR_uc001lpe.1_Missense_Mutation_p.S297F|SIGIRR_uc001lpg.2_Missense_Mutation_p.S297F	NM_001135054	NP_001128526	Q6IA17	SIGIR_HUMAN	single Ig IL-1R-related molecule	297	Cytoplasmic (Potential).|TIR.				acute-phase response|innate immune response|negative regulation of chemokine biosynthetic process|negative regulation of cytokine-mediated signaling pathway|negative regulation of lipopolysaccharide-mediated signaling pathway|negative regulation of sequence-specific DNA binding transcription factor activity	integral to membrane	protein binding|transmembrane receptor activity				0		all_cancers(49;1.59e-06)|all_epithelial(84;0.000256)|Breast(177;0.00122)|Ovarian(85;0.0228)|Medulloblastoma(188;0.0321)|all_neural(188;0.0762)		all cancers(45;1.56e-27)|Epithelial(43;9.31e-27)|OV - Ovarian serous cystadenocarcinoma(40;1.11e-20)|BRCA - Breast invasive adenocarcinoma(625;3.56e-05)|Lung(200;0.0182)|LUSC - Lung squamous cell carcinoma(625;0.0703)		CCAAAAATCGGAGGAAGGAGT	0.657000													16	50					0	0	1	0	0
SIGIRR	59307	broad.mit.edu	37	11	408113	408113	+	Missense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr11:408113G>C	uc001lpd.2	-	4	630	c.300C>G	c.(298-300)ATC>ATG	p.I100M	SIGIRR_uc001lpf.2_Missense_Mutation_p.I100M|SIGIRR_uc001lpe.1_Missense_Mutation_p.I100M|SIGIRR_uc001lpg.2_Missense_Mutation_p.I100M	NM_001135054	NP_001128526	Q6IA17	SIGIR_HUMAN	single Ig IL-1R-related molecule	100	Ig-like C2-type.|Extracellular (Potential).				acute-phase response|innate immune response|negative regulation of chemokine biosynthetic process|negative regulation of cytokine-mediated signaling pathway|negative regulation of lipopolysaccharide-mediated signaling pathway|negative regulation of sequence-specific DNA binding transcription factor activity	integral to membrane	protein binding|transmembrane receptor activity				0		all_cancers(49;1.59e-06)|all_epithelial(84;0.000256)|Breast(177;0.00122)|Ovarian(85;0.0228)|Medulloblastoma(188;0.0321)|all_neural(188;0.0762)		all cancers(45;1.56e-27)|Epithelial(43;9.31e-27)|OV - Ovarian serous cystadenocarcinoma(40;1.11e-20)|BRCA - Breast invasive adenocarcinoma(625;3.56e-05)|Lung(200;0.0182)|LUSC - Lung squamous cell carcinoma(625;0.0703)		TGATGTTCTGGATGGAGCAGG	0.587000													57	193					0	0	1	0	0
PTDSS2	81490	broad.mit.edu	37	11	488567	488567	+	Missense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr11:488567C>G	uc001lpj.2	+	8	950	c.774C>G	c.(772-774)ATC>ATG	p.I258M		NM_030783	NP_110410	Q9BVG9	PTSS2_HUMAN	phosphatidylserine synthase 2	258	Helical; (Potential).					integral to membrane					0		all_cancers(49;1.59e-06)|all_epithelial(84;0.000256)|Breast(177;0.00122)|Ovarian(85;0.0228)|Medulloblastoma(188;0.0321)|all_neural(188;0.0762)		all cancers(45;2.76e-26)|Epithelial(43;2.56e-25)|OV - Ovarian serous cystadenocarcinoma(40;7.54e-20)|BRCA - Breast invasive adenocarcinoma(625;8.76e-05)|Lung(200;0.0407)|LUSC - Lung squamous cell carcinoma(625;0.0735)	Phosphatidylserine(DB00144)	GGCTGGGCATCTACTGCGGCA	0.627000													26	82					0	0	1	0	0
PHRF1	57661	broad.mit.edu	37	11	606580	606580	+	Silent	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr11:606580C>G	uc001lqe.2	+	13	1724	c.1593C>G	c.(1591-1593)CTC>CTG	p.L531L	PHRF1_uc010qwc.1_Silent_p.L530L|PHRF1_uc010qwd.1_Silent_p.L529L|PHRF1_uc010qwe.1_Silent_p.L527L|PHRF1_uc009ybz.1_Silent_p.L321L|PHRF1_uc009yca.1_5'Flank	NM_020901	NP_065952	Q9P1Y6	PHRF1_HUMAN	PHD and ring finger domains 1	531							RNA polymerase binding|zinc ion binding				0						ACGGCTCCCTCAGCGCCAAGA	0.652000													10	34					0	0	1	0	0
PHRF1	57661	broad.mit.edu	37	11	607352	607352	+	Silent	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr11:607352C>T	uc001lqe.2	+	14	2027	c.1896C>T	c.(1894-1896)TTC>TTT	p.F632F	PHRF1_uc010qwc.1_Silent_p.F631F|PHRF1_uc010qwd.1_Silent_p.F630F|PHRF1_uc010qwe.1_Silent_p.F628F|PHRF1_uc009ybz.1_Silent_p.F422F|PHRF1_uc009yca.1_RNA	NM_020901	NP_065952	Q9P1Y6	PHRF1_HUMAN	PHD and ring finger domains 1	632							RNA polymerase binding|zinc ion binding				0						GCCCCTGGTTCAACGGCACCA	0.612000													40	149					0	0	1	0	0
PHRF1	57661	broad.mit.edu	37	11	608208	608208	+	Missense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr11:608208G>C	uc001lqe.2	+	14	2883	c.2752G>C	c.(2752-2754)GAG>CAG	p.E918Q	PHRF1_uc010qwc.1_Missense_Mutation_p.E917Q|PHRF1_uc010qwd.1_Missense_Mutation_p.E916Q|PHRF1_uc010qwe.1_Missense_Mutation_p.E914Q|PHRF1_uc009ybz.1_Missense_Mutation_p.E708Q|PHRF1_uc009yca.1_RNA	NM_020901	NP_065952	Q9P1Y6	PHRF1_HUMAN	PHD and ring finger domains 1	918							RNA polymerase binding|zinc ion binding				0						CTCTGACACGGAGCGAGAGGA	0.692000													5	47					0	0	1	0	0
MUC6	4588	broad.mit.edu	37	11	1028329	1028329	+	Silent	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr11:1028329G>A	uc001lsw.2	-	14	1701	c.1650C>T	c.(1648-1650)ATC>ATT	p.I550I		NM_005961	NP_005952	Q6W4X9	MUC6_HUMAN	mucin 6, gastric	550	VWFD 2.				maintenance of gastrointestinal epithelium	extracellular region	extracellular matrix structural constituent			ovary(1)	1		all_cancers(49;3.3e-08)|all_epithelial(84;5.08e-05)|Breast(177;0.000307)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.229)		all cancers(45;1.24e-24)|BRCA - Breast invasive adenocarcinoma(625;0.00031)|Lung(200;0.0576)|LUSC - Lung squamous cell carcinoma(625;0.0703)		TGCCCTCGGCGATACCCATGC	0.652000													5	15					0	0	1	0	0
MUC6	4588	broad.mit.edu	37	11	1028943	1028943	+	Nonsense_Mutation	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr11:1028943G>A	uc001lsw.2	-	12	1450	c.1399C>T	c.(1399-1401)CAG>TAG	p.Q467*		NM_005961	NP_005952	Q6W4X9	MUC6_HUMAN	mucin 6, gastric	467	VWFD 2.				maintenance of gastrointestinal epithelium	extracellular region	extracellular matrix structural constituent			ovary(1)	1		all_cancers(49;3.3e-08)|all_epithelial(84;5.08e-05)|Breast(177;0.000307)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.229)		all cancers(45;1.24e-24)|BRCA - Breast invasive adenocarcinoma(625;0.00031)|Lung(200;0.0576)|LUSC - Lung squamous cell carcinoma(625;0.0703)		ACCTCGTCCTGAGAGATCACA	0.617000													21	84					0	0	1	0	0
MUC5B	727897	broad.mit.edu	37	11	1269780	1269780	+	Missense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr11:1269780G>C	uc009ycr.1	+	50	13380	c.13254G>C	c.(13252-13254)TGG>TGC	p.W4418C	MUC5B_uc001ltb.2_Missense_Mutation_p.W3893C	NM_017511	NP_059981	Q9HC84	MUC5B_HUMAN	SubName: Full=Mucin 5AC, oligomeric mucus/gel-forming;	3890	7 X Cys-rich subdomain repeats.|11 X approximate tandem repeats, Ser/Thr- rich.|Thr-rich.				cell adhesion	extracellular region	extracellular matrix structural constituent|protein binding				0		all_cancers(49;6.97e-08)|all_epithelial(84;3.45e-05)|Breast(177;0.000307)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.229)		BRCA - Breast invasive adenocarcinoma(625;0.00141)|Lung(200;0.0853)|LUSC - Lung squamous cell carcinoma(625;0.1)		CTCCAGTGTGGATCAGCACAA	0.647000													13	65					0	0	1	0	0
H19	283120	broad.mit.edu	37	11	2017162	2017162	+	Missense_Mutation	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr11:2017162C>T	uc001lvc.1	-	4	1629	c.1011G>A	c.(1009-1011)ATG>ATA	p.M337I	H19_uc001luz.1_Intron|H19_uc001lva.3_RNA|H19_uc001lvd.2_RNA|H19_uc001lve.2_RNA|H19_uc001lvb.1_RNA					SubName: Full=cDNA FLJ32212 fis, clone PLACE6003399, weakly similar to SPIDROIN 1;												0						GCAGCATATTCATTTCCAAGC	0.562000									Beckwith-Wiedemann_syndrome				13	39					0	0	1	0	0
TRIM21	6737	broad.mit.edu	37	11	4411252	4411252	+	Missense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr11:4411252C>G	uc001lyy.1	-	2	501	c.388G>C	c.(388-390)GAG>CAG	p.E130Q		NM_003141	NP_003132	P19474	RO52_HUMAN	tripartite motif protein 21	130	Potential.				cell cycle|negative regulation of NF-kappaB transcription factor activity|negative regulation of protein deubiquitination|positive regulation of cell cycle|protein autoubiquitination|protein destabilization|protein monoubiquitination|protein polyubiquitination|protein trimerization	cytoplasmic mRNA processing body|nucleus	DNA binding|protein binding|RNA binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(3)|lung(1)	4		Medulloblastoma(188;0.0025)|Breast(177;0.0101)|all_neural(188;0.0227)		Epithelial(150;2.08e-11)|BRCA - Breast invasive adenocarcinoma(625;0.0851)|LUSC - Lung squamous cell carcinoma(625;0.194)		TGTGCAGCCTCCTCAAGAGGG	0.562000													10	34					0	0	1	0	0
OR51D1	390038	broad.mit.edu	37	11	4661948	4661948	+	Missense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr11:4661948G>C	uc010qyk.1	+	1	928	c.928G>C	c.(928-930)GAG>CAG	p.E310Q		NM_001004751	NP_001004751	Q8NGF3	O51D1_HUMAN	olfactory receptor, family 51, subfamily D,	310	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0		Medulloblastoma(188;0.0075)|Breast(177;0.0461)|all_neural(188;0.0577)		Epithelial(150;2.74e-13)|BRCA - Breast invasive adenocarcinoma(625;0.00435)|GBM - Glioblastoma multiforme(2;0.0841)|LUSC - Lung squamous cell carcinoma(625;0.19)		CAAGACCAAAGAGATCTGTTC	0.493000													39	105					0	0	1	0	0
MMP26	56547	broad.mit.edu	37	11	5013305	5013305	+	Missense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr11:5013305G>C	uc001lzv.2	+	5	725	c.707G>C	c.(706-708)AGA>ACA	p.R236T		NM_021801	NP_068573	Q9NRE1	MMP26_HUMAN	matrix metalloproteinase 26 preproprotein	236					collagen catabolic process|proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding				0		Medulloblastoma(188;0.0025)|Breast(177;0.0204)|all_neural(188;0.0227)		Epithelial(150;1.33e-11)|BRCA - Breast invasive adenocarcinoma(625;0.0287)|LUSC - Lung squamous cell carcinoma(625;0.191)		CACGACCCTAGAACCTTCCAG	0.488000													14	53					0	0	1	0	0
OR52D1	390066	broad.mit.edu	37	11	5510628	5510628	+	Missense_Mutation	SNP	T	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr11:5510628T>A	uc010qzg.1	+	1	692	c.692T>A	c.(691-693)CTT>CAT	p.L231H	HBG2_uc001mak.1_Intron|HBE1_uc001mam.1_Intron|OR51B5_uc001maq.1_Intron	NM_001005163	NP_001005163	Q9H346	O52D1_HUMAN	olfactory receptor, family 52, subfamily D,	231	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)	1		Medulloblastoma(188;0.0075)|all_neural(188;0.0572)|Breast(177;0.0675)		Epithelial(150;3.46e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		GTCTTTCATCTTCCATCTCAT	0.488000													68	196					0	0	1	0	0
OR52N1	79473	broad.mit.edu	37	11	5809764	5809764	+	Missense_Mutation	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr11:5809764C>T	uc010qzo.1	-	1	283	c.283G>A	c.(283-285)GAT>AAT	p.D95N	TRIM5_uc001mbq.1_Intron|TRIM22_uc009yet.1_Intron	NM_001001913	NP_001001913	Q8NH53	O52N1_HUMAN	olfactory receptor, family 52, subfamily N,	95	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1		Medulloblastoma(188;0.0075)|all_neural(188;0.0577)|Breast(177;0.086)		Epithelial(150;3.05e-11)|LUSC - Lung squamous cell carcinoma(625;0.112)|BRCA - Breast invasive adenocarcinoma(625;0.135)|Lung(200;0.195)		GCTTTAAAATCAATCTCCTTG	0.502000													30	132					0	0	1	0	0
DCHS1	8642	broad.mit.edu	37	11	6652990	6652990	+	Missense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr11:6652990G>C	uc001mem.1	-	7	3942	c.3532C>G	c.(3532-3534)CAG>GAG	p.Q1178E		NM_003737	NP_003728	Q96JQ0	PCD16_HUMAN	dachsous 1 precursor	1178	Cadherin 11.|Extracellular (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(3)|large_intestine(1)|pancreas(1)	5		Medulloblastoma(188;0.00263)|all_neural(188;0.026)		Epithelial(150;6.35e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		ACCAGGAGCTGATAGCTGCTC	0.577000													12	27					0	0	1	0	0
OVCH2	341277	broad.mit.edu	37	11	7723819	7723819	+	Missense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr11:7723819G>C	uc010rbf.1	-	4	348	c.348C>G	c.(346-348)GAC>GAG	p.D116E		NM_198185	NP_937828			ovochymase 2 precursor												0				Epithelial(150;7.9e-08)|BRCA - Breast invasive adenocarcinoma(625;0.197)		GCTCTCCTGGGTCTGTCTGGC	0.393000													10	26					0	0	1	0	0
TUB	7275	broad.mit.edu	37	11	8119290	8119290	+	Missense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr11:8119290G>C	uc001mga.2	+	8	1064	c.915G>C	c.(913-915)AAG>AAC	p.K305N	TUB_uc010rbk.1_Missense_Mutation_p.K311N|TUB_uc001mfy.2_Missense_Mutation_p.K360N	NM_177972	NP_813977	P50607	TUB_HUMAN	tubby isoform b	305					phagocytosis|positive regulation of phagocytosis|response to stimulus	cytoplasm|extracellular region|nucleus|plasma membrane				ovary(1)	1		all_lung(207;6.91e-20)|Lung NSC(207;3.36e-17)		Epithelial(150;1.69e-62)|BRCA - Breast invasive adenocarcinoma(625;8.54e-06)|LUSC - Lung squamous cell carcinoma(625;0.000184)		GGAAGAGAAAGAAGAGTAAAA	0.517000													46	149					0	0	1	0	0
STK33	65975	broad.mit.edu	37	11	8494730	8494730	+	Missense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr11:8494730C>G	uc001mgi.1	-	2	1238	c.319G>C	c.(319-321)GAG>CAG	p.E107Q	STK33_uc001mgj.1_Missense_Mutation_p.E107Q|STK33_uc001mgk.1_Missense_Mutation_p.E107Q|STK33_uc010rbn.1_Missense_Mutation_p.E66Q|STK33_uc001mgl.3_Intron|STK33_uc009yfp.2_Intron	NM_030906	NP_112168	Q9BYT3	STK33_HUMAN	serine/threonine kinase 33	107						Golgi apparatus|nucleus|perinuclear region of cytoplasm	ATP binding|protein serine/threonine kinase activity			ovary(2)|lung(2)|pancreas(1)|central_nervous_system(1)|skin(1)	7				Epithelial(150;2.13e-06)|BRCA - Breast invasive adenocarcinoma(625;0.239)		GCTCCATTCTCAATCCTTATG	0.398000													44	185					0	0	1	0	0
MRVI1	10335	broad.mit.edu	37	11	10653569	10653569	+	Missense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr11:10653569C>G	uc010rcc.1	-	4	755	c.369G>C	c.(367-369)TTG>TTC	p.L123F	MRVI1_uc001miw.2_Missense_Mutation_p.L114F|MRVI1_uc010rcb.1_Missense_Mutation_p.L114F|MRVI1_uc009ygb.1_5'UTR|MRVI1_uc001mix.2_5'UTR|MRVI1_uc001miz.2_Missense_Mutation_p.L32F|MRVI1_uc009ygc.1_Missense_Mutation_p.L32F|MRVI1_uc010rcd.1_Missense_Mutation_p.L123F|MRVI1_uc009ygd.1_5'UTR|MRVI1_uc010rce.1_RNA	NM_001100167	NP_001093637	Q9Y6F6	MRVI1_HUMAN	JAW1-related protein isoform c	114					platelet activation	endoplasmic reticulum membrane|integral to membrane|perinuclear region of cytoplasm|platelet dense tubular network membrane|sarcoplasmic reticulum				ovary(2)|central_nervous_system(1)	3				all cancers(16;2.68e-07)|Epithelial(150;3.04e-07)|BRCA - Breast invasive adenocarcinoma(625;0.0723)		TGGACACCTTCAAGTGTCGGT	0.483000													13	42					0	0	1	0	0
CTR9	9646	broad.mit.edu	37	11	10795563	10795563	+	Missense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr11:10795563C>G	uc001mja.2	+	22	2881	c.2732C>G	c.(2731-2733)TCT>TGT	p.S911C		NM_014633	NP_055448	Q6PD62	CTR9_HUMAN	SH2 domain binding protein 1	911	Lys-rich.				histone H2B ubiquitination|histone monoubiquitination	Cdc73/Paf1 complex|nuclear speck				ovary(2)	2				all cancers(16;1.64e-07)|Epithelial(150;2.47e-07)|BRCA - Breast invasive adenocarcinoma(625;0.111)		TTTTAGCGTTCTAAGAAGGGA	0.323000													19	91					0	0	1	0	0
BTBD10	84280	broad.mit.edu	37	11	13410601	13410601	+	Missense_Mutation	SNP	C	T	T	rs75019394		TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr11:13410601C>T	uc001mkz.2	-	9	1462	c.1205G>A	c.(1204-1206)CGA>CAA	p.R402Q	BTBD10_uc010rcl.1_Missense_Mutation_p.R410Q|BTBD10_uc001mla.2_Missense_Mutation_p.R386Q|BTBD10_uc009ygn.2_RNA|BTBD10_uc010rcm.1_Missense_Mutation_p.R354Q	NM_032320	NP_115696	Q9BSF8	BTBDA_HUMAN	K+ channel tetramerization protein	402						nucleus					0				Epithelial(150;0.0214)		CCAGGACATTCGAATAAAGGG	0.428000													41	100					0	0	1	0	0
ABCC8	6833	broad.mit.edu	37	11	17429944	17429944	+	Missense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr11:17429944C>G	uc001mnc.2	-	23	2941	c.2815G>C	c.(2815-2817)GAG>CAG	p.E939Q		NM_000352	NP_000343	Q09428	ABCC8_HUMAN	ATP-binding cassette, sub-family C, member 8	939	Cytoplasmic (By similarity).				carbohydrate metabolic process|energy reserve metabolic process	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances|potassium ion transmembrane transporter activity|sulfonylurea receptor activity			ovary(1)	1				READ - Rectum adenocarcinoma(2;0.0325)|Colorectal(2;0.1)	Adenosine triphosphate(DB00171)|Glibenclamide(DB01016)|Gliclazide(DB01120)|Mitiglinide(DB01252)|Nateglinide(DB00731)|Repaglinide(DB00912)	CCCACCTTCTCCAGCTCTTGG	0.547000													28	111					0	0	1	0	0
KCNC1	3746	broad.mit.edu	37	11	17793718	17793718	+	Silent	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr11:17793718C>T	uc001mnk.3	+	2	1132	c.1077C>T	c.(1075-1077)TTC>TTT	p.F359F	KCNC1_uc009yhc.1_Silent_p.F359F	NM_004976	NP_004967	P48547	KCNC1_HUMAN	Shaw-related voltage-gated potassium channel	359	Helical; Name=Segment S5; (Potential).					voltage-gated potassium channel complex	voltage-gated potassium channel activity			upper_aerodigestive_tract(1)	1						TGCTGATCTTCGCCACCATGA	0.607000													17	51					0	0	1	0	0
SPTY2D1	144108	broad.mit.edu	37	11	18636241	18636241	+	Missense_Mutation	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr11:18636241G>A	uc001moy.2	-	3	1796	c.1580C>T	c.(1579-1581)TCA>TTA	p.S527L	SPTY2D1_uc010rdi.1_Missense_Mutation_p.S527L	NM_194285	NP_919261	Q68D10	SPT2_HUMAN	SPT2, Suppressor of Ty, domain containing 1	527	Ser-rich.									breast(1)	1						AGTGGGACCTGAGCTACTAAC	0.473000													15	75					0	0	1	0	0
SPTY2D1	144108	broad.mit.edu	37	11	18636920	18636920	+	Missense_Mutation	SNP	G	A	A	rs138155181	byFrequency	TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr11:18636920G>A	uc001moy.2	-	3	1117	c.901C>T	c.(901-903)CGT>TGT	p.R301C	SPTY2D1_uc010rdi.1_Missense_Mutation_p.R301C	NM_194285	NP_919261	Q68D10	SPT2_HUMAN	SPT2, Suppressor of Ty, domain containing 1	301	Ser-rich.									breast(1)	1						TGGCCCTCACGAAGTGAGGGT	0.507000													4	185					0	0	1	0	0
KIF18A	81930	broad.mit.edu	37	11	28057887	28057887	+	Missense_Mutation	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr11:28057887C>T	uc001msc.2	-	14	2455	c.2273G>A	c.(2272-2274)AGA>AAA	p.R758K		NM_031217	NP_112494	Q8NI77	KI18A_HUMAN	kinesin family member 18A	758					blood coagulation|microtubule depolymerization|microtubule-based movement|mitotic metaphase plate congression|mitotic prometaphase|protein transport	caveola|cytosol|kinetochore microtubule|microtubule organizing center|nucleus|ruffle	actin binding|ATP binding|microtubule plus-end binding|plus-end-directed microtubule motor activity|tubulin-dependent ATPase activity|ubiquitin binding			ovary(2)	2						ACATTCTTTTCTTCTATTATG	0.363000													4	123					0	0	1	0	0
DCDC1	341019	broad.mit.edu	37	11	31312394	31312394	+	Silent	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr11:31312394G>A	uc001msv.2	-	7	962	c.760C>T	c.(760-762)CTG>TTG	p.L254L	DCDC1_uc001msu.1_Intron	NM_181807	NP_861523	P59894	DCDC1_HUMAN	doublecortin domain containing 1	254					intracellular signal transduction					skin(1)	1	Lung SC(675;0.225)					ATTAACAACAGATGGTCTAGA	0.328000													5	76					0	0	1	0	0
CAT	847	broad.mit.edu	37	11	34472557	34472557	+	Silent	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr11:34472557C>T	uc001mvm.2	+	3	344	c.261C>T	c.(259-261)GTC>GTT	p.V87V	CAT_uc009ykc.1_RNA	NM_001752	NP_001743	P04040	CATA_HUMAN	catalase	87					hydrogen peroxide catabolic process|negative regulation of apoptosis|positive regulation of cell division|protein tetramerization|purine base metabolic process|purine nucleotide catabolic process|UV protection	peroxisomal matrix|peroxisomal membrane	catalase activity|heme binding|NADP binding|protein homodimerization activity			ovary(2)|pancreas(1)	3		Lung NSC(402;2.76e-08)|Acute lymphoblastic leukemia(5;0.00143)|all_hematologic(20;0.0116)|Melanoma(852;0.027)		BRCA - Breast invasive adenocarcinoma(625;0.000995)	Fomepizole(DB01213)	ACTTTGAGGTCACACATGACA	0.458000													57	194					0	0	1	0	0
PRR5L	79899	broad.mit.edu	37	11	36472765	36472765	+	Missense_Mutation	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr11:36472765C>T	uc001mwo.3	+	8	981	c.592C>T	c.(592-594)CAC>TAC	p.H198Y	PRR5L_uc001mwp.2_Missense_Mutation_p.H198Y|PRR5L_uc009ykk.2_Missense_Mutation_p.H70Y|PRR5L_uc010rfc.1_Intron	NM_001160167	NP_001153639	Q6MZQ0	PRR5L_HUMAN	protor-2 isoform a	198										ovary(1)	1						CCAGAGTGTTCACGAGCCCAC	0.502000													37	112					0	0	1	0	0
OR4A16	81327	broad.mit.edu	37	11	55111137	55111137	+	Missense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr11:55111137C>G	uc010rie.1	+	1	461	c.461C>G	c.(460-462)TCT>TGT	p.S154C		NM_001005274	NP_001005274	Q8NH70	O4A16_HUMAN	olfactory receptor, family 4, subfamily A,	154	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			large_intestine(2)|pancreas(1)	3						TTTGTGCACTCTGTGGTTCAA	0.453000													53	163					0	0	1	0	0
OR5T3	390154	broad.mit.edu	37	11	56020545	56020545	+	Missense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr11:56020545G>C	uc010rjd.1	+	1	870	c.870G>C	c.(868-870)ATG>ATC	p.M290I		NM_001004747	NP_001004747	Q8NGG3	OR5T3_HUMAN	olfactory receptor, family 5, subfamily T,	290	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	Esophageal squamous(21;0.00448)					TCAGTTATATGAGACCAAGTT	0.403000													30	130					0	0	1	0	0
TIMM10	26519	broad.mit.edu	37	11	57296203	57296203	+	Missense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr11:57296203G>C	uc001nkm.1	-	3	407	c.260C>G	c.(259-261)TCT>TGT	p.S87C		NM_012456	NP_036588	P62072	TIM10_HUMAN	translocase of inner mitochondrial membrane 10	87					protein import into mitochondrial inner membrane|sensory perception of sound|transmembrane transport	mitochondrial inner membrane presequence translocase complex|mitochondrial intermembrane space protein transporter complex	zinc ion binding				0						TGCAGGCCCAGAGCTCTGCTG	0.522000													32	80					0	0	1	0	0
MED19	219541	broad.mit.edu	37	11	57472622	57472622	+	Silent	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr11:57472622C>T	uc001nla.1	-	2	319	c.297G>A	c.(295-297)AAG>AAA	p.K99K	MED19_uc001nlb.2_Silent_p.K99K	NM_153450	NP_703151	A0JLT2	MED19_HUMAN	mediator complex subunit 19	99					regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	mediator complex				ovary(2)	2						CCTTCACCTTCTTCCCACAGA	0.468000													26	72					0	0	1	0	0
ZFP91	80829	broad.mit.edu	37	11	58378523	58378523	+	Missense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr11:58378523G>C	uc001nmx.3	+	5	886	c.718G>C	c.(718-720)GAA>CAA	p.E240Q	ZFP91_uc001nmy.3_Missense_Mutation_p.E239Q|ZFP91-CNTF_uc010rkm.1_RNA	NM_053023	NP_444251	Q96JP5	ZFP91_HUMAN	zinc finger protein 91	240	Glu-rich.				activation of NF-kappaB-inducing kinase activity|protein K63-linked ubiquitination	nucleus	nucleic acid binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(1)	1		Breast(21;0.00725)|all_epithelial(135;0.0101)|all_lung(304;0.24)				ACCCCACTTAGAAAGGCATGT	0.388000													15	49					0	0	1	0	0
TMEM132A	54972	broad.mit.edu	37	11	60702840	60702840	+	Missense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr11:60702840G>C	uc001nqj.2	+	10	2146	c.1953G>C	c.(1951-1953)TTG>TTC	p.L651F	TMEM132A_uc001nqi.2_Missense_Mutation_p.L652F|TMEM132A_uc001nqm.2_5'UTR	NM_178031	NP_821174	Q24JP5	T132A_HUMAN	transmembrane protein 132A isoform b	651	Binds to HSPA5/GRP78 (By similarity).|Extracellular (Potential).					endoplasmic reticulum membrane|Golgi membrane|integral to membrane				skin(1)	1						CGCTGACCTTGAGCCGGGGCA	0.662000													5	22					0	0	1	0	0
CPSF7	79869	broad.mit.edu	37	11	61183983	61183983	+	Missense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr11:61183983G>C	uc001nrq.2	-	6	693	c.559C>G	c.(559-561)CCA>GCA	p.P187A	CPSF7_uc001nro.2_Missense_Mutation_p.P178A|CPSF7_uc001nrp.2_Missense_Mutation_p.P230A|CPSF7_uc001nrr.2_Missense_Mutation_p.P178A|CPSF7_uc001nrs.1_Missense_Mutation_p.P88A	NM_001136040	NP_001129512	Q8N684	CPSF7_HUMAN	pre-mRNA cleavage factor I, 59 kDa subunit	187					mRNA 3'-end processing|nuclear mRNA splicing, via spliceosome|protein tetramerization|termination of RNA polymerase II transcription	mRNA cleavage factor complex	nucleotide binding|protein binding|RNA binding			central_nervous_system(1)	1						TGGGCCCGTGGAGGTATTCCT	0.512000													3	138					0	0	1	0	0
GANAB	23193	broad.mit.edu	37	11	62397951	62397951	+	Missense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr11:62397951G>C	uc001nub.2	-	12	1446	c.1413C>G	c.(1411-1413)ATC>ATG	p.I471M	GANAB_uc001nua.2_Missense_Mutation_p.I493M|GANAB_uc001nuc.2_Missense_Mutation_p.I374M|GANAB_uc010rma.1_Missense_Mutation_p.I379M|GANAB_uc010rmb.1_Missense_Mutation_p.I357M	NM_198334	NP_938148	Q14697	GANAB_HUMAN	neutral alpha-glucosidase AB isoform 2	471					post-translational protein modification|protein folding|protein N-linked glycosylation via asparagine	endoplasmic reticulum lumen|Golgi apparatus|melanosome	carbohydrate binding|glucan 1,3-alpha-glucosidase activity|protein binding			ovary(3)|central_nervous_system(1)|skin(1)	5						AGTCCACCTTGATGTGGGGGT	0.577000													6	195					0	0	1	0	0
SNHG1	23642	broad.mit.edu	37	11	62621506	62621506	+	RNA	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr11:62621506C>T	uc001nvp.2	-	4		c.219G>A			SLC3A2_uc001nwb.2_5'Flank|SLC3A2_uc001nwc.2_5'Flank|SLC3A2_uc001nwd.2_5'Flank|SLC3A2_uc001nwe.2_5'Flank|SLC3A2_uc001nwf.2_5'Flank|SNHG1_uc001nvo.2_RNA|SNHG1_uc001nvq.2_Intron|SNHG1_uc001nvs.2_RNA|SNHG1_uc001nvr.2_RNA|SNHG1_uc001nvt.2_RNA|SNHG1_uc001nvu.2_RNA|SNORD22_uc001nvv.2_5'Flank|SNORD31_uc009yoj.1_5'Flank|SNORD30_uc001nvw.1_5'Flank|SNORD29_uc001nvx.2_5'Flank					Homo sapiens cDNA FLJ38530 fis, clone HCHON2001039.												0						GCTCTGAAGGCTTTTCAATGG	0.368000													16	30					0	0	1	0	0
SLC22A9	114571	broad.mit.edu	37	11	63138626	63138626	+	Missense_Mutation	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr11:63138626C>T	uc001nww.2	+	2	690	c.422C>T	c.(421-423)TCT>TTT	p.S141F	SLC22A9_uc001nwx.2_RNA	NM_080866	NP_543142	Q8IVM8	S22A9_HUMAN	solute carrier family 22 (organic anion/cation	141	Extracellular (Potential).				transmembrane transport	integral to membrane				breast(2)|large_intestine(1)	3						GTATGTGACTCTCAATCACTG	0.443000													14	54					0	0	1	0	0
RTN3	10313	broad.mit.edu	37	11	63486746	63486746	+	Missense_Mutation	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr11:63486746G>A	uc001nxq.2	+	3	959	c.772G>A	c.(772-774)GAC>AAC	p.D258N	RTN3_uc001nxo.2_Intron|RTN3_uc001nxm.2_Intron|RTN3_uc001nxn.2_Missense_Mutation_p.D239N|RTN3_uc001nxp.2_Intron|RTN3_uc009yov.2_Missense_Mutation_p.D146N|RTN3_uc010rmt.1_Intron|RTN3_uc010rmu.1_Intron	NM_201428	NP_958831	O95197	RTN3_HUMAN	reticulon 3 isoform b	258					apoptosis|endoplasmic reticulum tubular network organization|interspecies interaction between organisms|response to stress|vesicle-mediated transport	endoplasmic reticulum membrane|extracellular space|Golgi membrane|integral to membrane				ovary(1)	1						AGCAGCATTTGACAAAGAATT	0.358000													24	69					0	0	1	0	0
FERMT3	83706	broad.mit.edu	37	11	63990556	63990556	+	Silent	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr11:63990556C>T	uc001nyl.2	+	14	1868	c.1719C>T	c.(1717-1719)ATC>ATT	p.I573I	FERMT3_uc001nym.2_Silent_p.I569I	NM_178443	NP_848537	Q86UX7	URP2_HUMAN	fermitin family homolog 3 long form	573					integrin activation|leukocyte cell-cell adhesion|platelet aggregation|regulation of cell-cell adhesion mediated by integrin	cell junction|cell projection|podosome	integrin binding			ovary(1)	1						TCCTGGGCATCGCCAACAACC	0.622000													35	82					0	0	1	0	0
CDC42BPG	55561	broad.mit.edu	37	11	64609203	64609203	+	Silent	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr11:64609203G>A	uc001obs.3	-	3	255	c.255C>T	c.(253-255)GTC>GTT	p.V85V		NM_017525	NP_059995	Q6DT37	MRCKG_HUMAN	CDC42 binding protein kinase gamma (DMPK-like)	85	ATP (By similarity).|Protein kinase.				actin cytoskeleton reorganization|intracellular signal transduction	cell leading edge|centrosome	ATP binding|magnesium ion binding|protein binding|protein serine/threonine kinase activity|small GTPase regulator activity			lung(3)|central_nervous_system(1)	4						TCACCACGGTGACCTAAGGCC	0.622000													63	131					0	0	1	0	0
C11orf2	738	broad.mit.edu	37	11	64864556	64864556	+	Missense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr11:64864556G>C	uc001ocr.1	+	2	355	c.315G>C	c.(313-315)CAG>CAC	p.Q105H		NM_013265	NP_037397	Q9UID3	FFR_HUMAN	chromosome 11 open reading frame 2	105					lipid transport|protein transport	Golgi apparatus|integral to membrane					0						GCGACATGCAGACCCTGGTCT	0.572000													9	26					0	0	1	0	0
EHBP1L1	254102	broad.mit.edu	37	11	65349987	65349987	+	Nonsense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr11:65349987C>G	uc001oeo.3	+	9	2109	c.1844C>G	c.(1843-1845)TCA>TGA	p.S615*	EHBP1L1_uc001oep.1_Intron	NM_001099409	NP_001092879	Q8N3D4	EH1L1_HUMAN	tangerin	615	Glu-rich.									central_nervous_system(1)	1						GCAGCAAGATCAAGGGTCCTG	0.547000													3	114					0	0	1	0	0
SIPA1	6494	broad.mit.edu	37	11	65417036	65417036	+	Missense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr11:65417036C>G	uc001ofb.2	+	11	2697	c.2530C>G	c.(2530-2532)CTG>GTG	p.L844V	SIPA1_uc010rom.1_Missense_Mutation_p.L742V|SIPA1_uc001ofd.2_Missense_Mutation_p.L844V	NM_006747	NP_006738	Q96FS4	SIPA1_HUMAN	signal-induced proliferation-associated protein	844					cell proliferation|cytoskeleton organization|intracellular signal transduction|negative regulation of cell adhesion|negative regulation of cell cycle|negative regulation of cell growth	cytosol|endomembrane system|membrane|perinuclear region of cytoplasm	Rap GTPase activator activity				0						CCCCAGCTCTCTGTCGGATGA	0.642000													40	117					0	0	1	0	0
SPTBN2	6712	broad.mit.edu	37	11	66467041	66467041	+	Silent	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr11:66467041G>C	uc001ojd.2	-	17	3684	c.3612C>G	c.(3610-3612)CTC>CTG	p.L1204L		NM_006946	NP_008877	O15020	SPTN2_HUMAN	spectrin, beta, non-erythrocytic 2	1204	Spectrin 9.				actin filament capping|axon guidance|cell death|vesicle-mediated transport	cytosol|spectrin	actin binding|structural constituent of cytoskeleton			large_intestine(1)|pancreas(1)|central_nervous_system(1)|skin(1)	4						CAGCAGCCTGGAGTGTCCCTG	0.567000													30	123					0	0	1	0	0
ADRBK1	156	broad.mit.edu	37	11	67044812	67044812	+	Silent	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr11:67044812G>A	uc009yrn.1	+	2	449	c.183G>A	c.(181-183)CAG>CAA	p.Q61Q	ADRBK1_uc009yrm.1_Silent_p.Q61Q	NM_001619	NP_001610	P25098	ARBK1_HUMAN	beta-adrenergic receptor kinase 1	61	RGS.|N-terminal.				activation of phospholipase C activity|cardiac muscle contraction|desensitization of G-protein coupled receptor protein signaling pathway|muscarinic acetylcholine receptor signaling pathway|negative regulation of striated muscle contraction|negative regulation of the force of heart contraction by chemical signal|nerve growth factor receptor signaling pathway|peptidyl-serine phosphorylation|positive regulation of catecholamine secretion|tachykinin receptor signaling pathway	cytosol|soluble fraction	alpha-2A adrenergic receptor binding|ATP binding|beta-adrenergic receptor kinase activity|Edg-2 lysophosphatidic acid receptor binding|G-protein coupled receptor kinase activity|signal transducer activity			large_intestine(1)	1			BRCA - Breast invasive adenocarcinoma(15;2.26e-06)		Adenosine triphosphate(DB00171)	TCTTTTCCCAGAAGCTGGGTG	0.592000													19	50					0	0	1	0	0
CORO1B	57175	broad.mit.edu	37	11	67208821	67208821	+	Missense_Mutation	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr11:67208821G>A	uc001olj.1	-	4	655	c.619C>T	c.(619-621)CGG>TGG	p.R207W	CORO1B_uc009yrs.1_RNA|CORO1B_uc001olk.1_Missense_Mutation_p.R207W|CORO1B_uc009yrt.1_RNA|CORO1B_uc009yru.1_RNA|CORO1B_uc001oll.1_Missense_Mutation_p.R207W|CORO1B_uc010rps.1_Missense_Mutation_p.R207W|CORO1B_uc009yrv.1_3'UTR	NM_020441	NP_065174	Q9BR76	COR1B_HUMAN	coronin, actin binding protein, 1B	207	WD 3.				actin cytoskeleton organization	actin cytoskeleton|cytoplasm	actin filament binding			large_intestine(1)|ovary(1)	2			BRCA - Breast invasive adenocarcinoma(15;3.26e-06)			AGGGTGCCCCGACGGGGGTCG	0.622000													41	109					0	0	1	0	0
GSTP1	2950	broad.mit.edu	37	11	67353985	67353985	+	Silent	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr11:67353985C>G	uc001omf.2	+	7	819	c.570C>G	c.(568-570)CTC>CTG	p.L190L	GSTP1_uc001omg.1_Silent_p.L171L	NM_000852	NP_000843	P09211	GSTP1_HUMAN	glutathione transferase	190	GST C-terminal.				anti-apoptosis|cellular response to lipopolysaccharide|central nervous system development|common myeloid progenitor cell proliferation|glutathione metabolic process|negative regulation of acute inflammatory response|negative regulation of ERK1 and ERK2 cascade|negative regulation of fibroblast proliferation|negative regulation of I-kappaB kinase/NF-kappaB cascade|negative regulation of interleukin-1 beta production|negative regulation of JUN kinase activity|negative regulation of leukocyte proliferation|negative regulation of monocyte chemotactic protein-1 production|negative regulation of necrotic cell death|negative regulation of nitric-oxide synthase 2 biosynthetic process|negative regulation of stress-activated MAPK cascade|negative regulation of tumor necrosis factor production|nitric oxide storage|positive regulation of superoxide anion generation|response to reactive oxygen species|xenobiotic metabolic process	cytosol|protein complex	dinitrosyl-iron complex binding|glutathione transferase activity|JUN kinase binding|kinase regulator activity|nitric oxide binding|S-nitrosoglutathione binding			ovary(1)	1					Ethacrynic acid(DB00903)|Glutathione(DB00143)	GGCCCAAGCTCAAGGCCTTCC	0.627000													18	54					0	0	1	0	0
LRP5	4041	broad.mit.edu	37	11	68125245	68125245	+	Nonsense_Mutation	SNP	G	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr11:68125245G>T	uc001ont.2	+	3	691	c.616G>T	c.(616-618)GAG>TAG	p.E206*	LRP5_uc009ysg.2_5'UTR	NM_002335	NP_002326	O75197	LRP5_HUMAN	low density lipoprotein receptor-related protein	206	Beta-propeller 1.|LDL-receptor class B 3.|Extracellular (Potential).				adipose tissue development|bone marrow development|bone morphogenesis|canonical Wnt receptor signaling pathway|cholesterol homeostasis|endocytosis|glucose catabolic process|negative regulation of osteoblast differentiation|negative regulation of protein serine/threonine kinase activity|positive regulation of fat cell differentiation|positive regulation of mesenchymal cell proliferation|positive regulation of mitosis|positive regulation of transcription from RNA polymerase II promoter|regulation of blood pressure|regulation of canonical Wnt receptor signaling pathway|retina morphogenesis in camera-type eye|retinal blood vessel morphogenesis|Wnt receptor signaling pathway involved in dorsal/ventral axis specification	endoplasmic reticulum|integral to membrane|plasma membrane|receptor complex	protein binding|receptor activity			lung(2)|skin(2)|ovary(1)|pancreas(1)|breast(1)	7						CGACCTGGAGGAGCAGAAGCT	0.622000													6	26					0.00116845	0.00118158	1	1	0
MTL5	9633	broad.mit.edu	37	11	68512461	68512461	+	Nonsense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr11:68512461G>C	uc001ooc.2	-	4	889	c.749C>G	c.(748-750)TCA>TGA	p.S250*	MTL5_uc001ood.1_Nonsense_Mutation_p.S250*|MTL5_uc009ysi.1_Nonsense_Mutation_p.S250*	NM_004923	NP_004914	Q9Y4I5	MTL5_HUMAN	metallothionein-like 5, testis-specific isoform	250					cell differentiation|cellular metal ion homeostasis|multicellular organismal development|response to metal ion|spermatogenesis	cytoplasm|nucleus|soluble fraction	metal ion binding			ovary(2)|breast(1)	3	Esophageal squamous(3;4.37e-12)		LUAD - Lung adenocarcinoma(13;0.0676)|STAD - Stomach adenocarcinoma(18;0.185)			CTTTGTACCTGACTGTAGATA	0.313000													10	80					0	0	1	0	0
TPCN2	219931	broad.mit.edu	37	11	68831410	68831410	+	Missense_Mutation	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr11:68831410G>A	uc001oos.2	+	7	817	c.701G>A	c.(700-702)GGA>GAA	p.G234E	TPCN2_uc009ysk.1_RNA|TPCN2_uc001oor.2_Missense_Mutation_p.G149E|TPCN2_uc010rqg.1_Missense_Mutation_p.G234E	NM_139075	NP_620714	Q8NHX9	TPC2_HUMAN	two pore segment channel 2	234	Helical; Name=S5 of repeat I; (Potential).				cellular calcium ion homeostasis|smooth muscle contraction	endosome membrane|integral to membrane|lysosomal membrane	NAADP-sensitive calcium-release channel activity|voltage-gated calcium channel activity				0			STAD - Stomach adenocarcinoma(18;0.0208)|LUAD - Lung adenocarcinoma(13;0.0713)			ACCATGTTCGGAATGCTGCTG	0.667000													5	44					0	0	1	0	0
SHANK2	22941	broad.mit.edu	37	11	70333107	70333107	+	Silent	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr11:70333107C>T	uc001oqc.2	-	21	3369	c.3291G>A	c.(3289-3291)AGG>AGA	p.R1097R	SHANK2_uc010rqn.1_Silent_p.R509R|SHANK2_uc001opz.2_Silent_p.R502R|uc009ysn.1_Intron|SHANK2_uc001opy.2_Intron	NM_012309	NP_036441	Q9UPX8	SHAN2_HUMAN	SH3 and multiple ankyrin repeat domains 2	718					intracellular signal transduction	cell junction|cytoplasm|postsynaptic density|postsynaptic membrane	GKAP/Homer scaffold activity|ionotropic glutamate receptor binding|SH3 domain binding			ovary(2)|pancreas(1)|central_nervous_system(1)|skin(1)	5			LUSC - Lung squamous cell carcinoma(11;4.72e-09)|STAD - Stomach adenocarcinoma(18;0.071)			CCGGGGAGTTCCTCCTGGCTT	0.716000													12	54					0	0	1	0	0
C11orf59	55004	broad.mit.edu	37	11	71814247	71814247	+	Missense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr11:71814247C>G	uc001ort.2	-	1	76	c.24G>C	c.(22-24)GAG>GAC	p.E8D	LRTOMT_uc010rqv.1_Intron|LRTOMT_uc010rqw.1_Intron|LRTOMT_uc001ors.3_Intron	NM_017907	NP_060377	Q6IAA8	LTOR1_HUMAN	hypothetical protein LOC55004	8					cell growth|cellular protein localization|cellular response to amino acid stimulus|cholesterol homeostasis|endosome localization|endosome organization|lysosome localization|lysosome organization|positive regulation of MAPKKK cascade|positive regulation of TOR signaling cascade|regulation of cholesterol efflux|regulation of cholesterol esterification|regulation of cholesterol import|regulation of receptor recycling	Golgi apparatus|lysosomal membrane|plasma membrane|Ragulator complex	protein binding				0						AGTCCTCGTTCTCGCTGCTGT	0.711000													2	9					0	0	1	0	0
FOLR1	2348	broad.mit.edu	37	11	71903284	71903284	+	Nonsense_Mutation	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr11:71903284C>T	uc001orz.1	+	3	205	c.67C>T	c.(67-69)CAG>TAG	p.Q23*	FOLR1_uc001osa.1_Nonsense_Mutation_p.Q23*|FOLR1_uc001osb.1_Nonsense_Mutation_p.Q23*|FOLR1_uc001osc.1_Nonsense_Mutation_p.Q23*|FOLR1_uc001osd.1_Nonsense_Mutation_p.Q23*	NM_016724	NP_057936	P15328	FOLR1_HUMAN	folate receptor 1 precursor	23					cell death|folic acid transport|receptor-mediated endocytosis	anchored to membrane|extracellular region|integral to plasma membrane|membrane fraction	folic acid binding|receptor activity			ovary(1)	1						AGGGGAGGCTCAGACAAGGAT	0.557000													32	114					0	0	1	0	0
FOLR1	2348	broad.mit.edu	37	11	71903325	71903325	+	Silent	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr11:71903325C>G	uc001orz.1	+	3	246	c.108C>G	c.(106-108)GTC>GTG	p.V36V	FOLR1_uc001osa.1_Silent_p.V36V|FOLR1_uc001osb.1_Silent_p.V36V|FOLR1_uc001osc.1_Silent_p.V36V|FOLR1_uc001osd.1_Silent_p.V36V	NM_016724	NP_057936	P15328	FOLR1_HUMAN	folate receptor 1 precursor	36					cell death|folic acid transport|receptor-mediated endocytosis	anchored to membrane|extracellular region|integral to plasma membrane|membrane fraction	folic acid binding|receptor activity			ovary(1)	1						TTCTCAATGTCTGCATGAACG	0.587000													35	105					0	0	1	0	0
ARAP1	116985	broad.mit.edu	37	11	72408143	72408143	+	Silent	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr11:72408143G>C	uc001osu.2	-	22	3240	c.3051C>G	c.(3049-3051)CTC>CTG	p.L1017L	ARAP1_uc001osv.2_Silent_p.L1017L|ARAP1_uc001osr.2_Silent_p.L777L|ARAP1_uc001oss.2_Silent_p.L772L|ARAP1_uc009yth.2_Silent_p.L711L|ARAP1_uc010rre.1_Silent_p.L772L	NM_001040118	NP_001035207	Q96P48	ARAP1_HUMAN	ArfGAP with RhoGAP domain, ankyrin repeat and PH	1017	Rho-GAP.				actin filament reorganization involved in cell cycle|negative regulation of stress fiber assembly|positive regulation of Cdc42 GTPase activity|positive regulation of filopodium assembly|regulation of ARF GTPase activity|regulation of cell shape|regulation of cellular component movement|small GTPase mediated signal transduction	cytosol|Golgi cisterna membrane|plasma membrane	ARF GTPase activator activity|phosphatidylinositol-3,4,5-trisphosphate binding|protein binding|Rho GTPase activator activity|zinc ion binding			skin(1)	1						CGCCCTCCTTGAGGTGCACAG	0.642000													18	111					0	0	1	0	0
ARAP1	116985	broad.mit.edu	37	11	72408153	72408153	+	Missense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr11:72408153G>C	uc001osu.2	-	22	3230	c.3041C>G	c.(3040-3042)TCT>TGT	p.S1014C	ARAP1_uc001osv.2_Missense_Mutation_p.S1014C|ARAP1_uc001osr.2_Missense_Mutation_p.S774C|ARAP1_uc001oss.2_Missense_Mutation_p.S769C|ARAP1_uc009yth.2_Missense_Mutation_p.S708C|ARAP1_uc010rre.1_Missense_Mutation_p.S769C	NM_001040118	NP_001035207	Q96P48	ARAP1_HUMAN	ArfGAP with RhoGAP domain, ankyrin repeat and PH	1014	Rho-GAP.				actin filament reorganization involved in cell cycle|negative regulation of stress fiber assembly|positive regulation of Cdc42 GTPase activity|positive regulation of filopodium assembly|regulation of ARF GTPase activity|regulation of cell shape|regulation of cellular component movement|small GTPase mediated signal transduction	cytosol|Golgi cisterna membrane|plasma membrane	ARF GTPase activator activity|phosphatidylinositol-3,4,5-trisphosphate binding|protein binding|Rho GTPase activator activity|zinc ion binding			skin(1)	1						GAGGTGCACAGAGCGCGCATC	0.657000													17	97					0	0	1	0	0
ATG16L2	89849	broad.mit.edu	37	11	72533173	72533173	+	Silent	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr11:72533173G>A	uc001otd.2	+	5	517	c.477G>A	c.(475-477)CAG>CAA	p.Q159Q	ATG16L2_uc010rrf.1_Intron|ATG16L2_uc001ote.2_Silent_p.Q53Q|ATG16L2_uc009ytj.1_Intron|ATG16L2_uc001otf.2_5'Flank|ATG16L2_uc001otg.2_5'Flank|ATG16L2_uc009ytk.2_5'Flank	NM_033388	NP_203746	Q8NAA4	A16L2_HUMAN	ATG16 autophagy related 16-like 2	159	Potential.				autophagy|protein transport	cytoplasm	protein binding				0			BRCA - Breast invasive adenocarcinoma(5;2.73e-06)			GGCGGGCGCAGAATGCGGTGC	0.751000													4	4					0	0	1	0	0
C2CD3	26005	broad.mit.edu	37	11	73785637	73785637	+	Missense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr11:73785637G>C	uc001ouu.2	-	24	4839	c.4612C>G	c.(4612-4614)CCT>GCT	p.P1538A	C2CD3_uc001out.2_RNA	NM_015531	NP_056346	Q4AC94	C2CD3_HUMAN	C2 calcium-dependent domain containing 3	1538						centrosome				ovary(4)|pancreas(2)|skin(1)	7	Breast(11;4.16e-06)					CCAAACAGAGGATACACACCT	0.483000													9	29					0	0	1	0	0
UVRAG	7405	broad.mit.edu	37	11	75591011	75591011	+	Missense_Mutation	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr11:75591011G>A	uc001oxc.2	+	4	600	c.359G>A	c.(358-360)GGA>GAA	p.G120E	UVRAG_uc010rrw.1_Missense_Mutation_p.G19E	NM_003369	NP_003360	Q9P2Y5	UVRAG_HUMAN	UV radiation resistance associated	120	C2.				DNA repair|positive regulation of autophagy	early endosome|late endosome|lysosome	protein binding			skin(4)|lung(2)	6						ATATGGGGTGGAAAGGAGAAC	0.428000													69	248					0	0	1	0	0
PRKRIR	5612	broad.mit.edu	37	11	76063578	76063578	+	Missense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr11:76063578C>G	uc001oxh.1	-	5	616	c.616G>C	c.(616-618)GAG>CAG	p.E206Q	PRKRIR_uc010rrz.1_Missense_Mutation_p.E31Q	NM_004705	NP_004696	O43422	P52K_HUMAN	protein-kinase, interferon-inducible double	206					negative regulation of cell proliferation|response to stress|signal transduction		DNA binding|metal ion binding|protein dimerization activity			ovary(2)|pancreas(1)	3						ATCCGACACTCCAGCAGTGCC	0.443000													21	62					0	0	1	0	0
CREBZF	58487	broad.mit.edu	37	11	85375024	85375024	+	Missense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr11:85375024G>C	uc001pas.2	-	1	1159	c.896C>G	c.(895-897)TCG>TGG	p.S299W	CREBZF_uc010rtc.1_RNA|CREBZF_uc010rtd.1_RNA	NM_001039618	NP_001034707	Q9NS37	ZHANG_HUMAN	HCF-binding transcription factor Zhangfei	299					negative regulation of gene expression, epigenetic|negative regulation of transcription, DNA-dependent|regulation of sequence-specific DNA binding transcription factor activity|response to virus	nucleus	protein dimerization activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)	1		Acute lymphoblastic leukemia(157;4.19e-06)|all_hematologic(158;0.0033)				ACCGGCGGGCGAGTCTCTGAA	0.642000											OREG0021274	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	18	51					0	0	1	0	0
MAML2	84441	broad.mit.edu	37	11	95712775	95712775	+	Missense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr11:95712775C>G	uc001pfw.1	-	5	4093	c.2808G>C	c.(2806-2808)TTG>TTC	p.L936F		NM_032427	NP_115803	Q8IZL2	MAML2_HUMAN	mastermind-like 2	936					Notch signaling pathway|positive regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	nuclear speck	transcription coactivator activity		CRTC1/MAML2(516)|CRTC3/MAML2(26)	salivary_gland(500)|lung(36)|thyroid(4)|breast(3)|skin(2)|ovary(1)	546		Acute lymphoblastic leukemia(157;2.63e-05)|all_hematologic(158;0.00837)				AATTTGGTCTCAATTGTTGTG	0.438000			T	MECT1|CRTC3	salivary gland mucoepidermoid								3	95					0	0	1	0	0
SIK2	23235	broad.mit.edu	37	11	111591721	111591721	+	Missense_Mutation	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr11:111591721G>A	uc001plt.2	+	12	1997	c.1879G>A	c.(1879-1881)GAG>AAG	p.E627K		NM_015191	NP_056006	Q9H0K1	SIK2_HUMAN	SNF1-like kinase 2	627					intracellular protein kinase cascade|regulation of insulin receptor signaling pathway	Golgi apparatus	ATP binding|magnesium ion binding|protein binding|protein serine/threonine kinase activity			central_nervous_system(2)|skin(1)	3						AATAGGACCGGAGGCAGACCC	0.517000													31	114					0	0	1	0	0
DIXDC1	85458	broad.mit.edu	37	11	111889740	111889740	+	Missense_Mutation	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr11:111889740G>A	uc001pml.2	+	21	2329	c.2032G>A	c.(2032-2034)GAA>AAA	p.E678K	DIXDC1_uc001pmm.2_Missense_Mutation_p.E467K|DIXDC1_uc001pmn.2_Missense_Mutation_p.E384K|DIXDC1_uc010rwq.1_Missense_Mutation_p.E343K	NM_001037954	NP_001033043	Q155Q3	DIXC1_HUMAN	DIX domain containing 1 isoform a	678	DIX.				multicellular organismal development|positive regulation of canonical Wnt receptor signaling pathway|Wnt receptor signaling pathway	cytosol|focal adhesion	actin binding|gamma-tubulin binding|signal transducer activity			ovary(1)	1		all_cancers(61;7.58e-15)|all_epithelial(67;5.42e-09)|Melanoma(852;1.91e-06)|all_hematologic(158;0.000405)|Acute lymphoblastic leukemia(157;0.000967)|Breast(348;0.0112)|all_neural(223;0.0281)|Medulloblastoma(222;0.0425)		Epithelial(105;2.99e-07)|BRCA - Breast invasive adenocarcinoma(274;6.72e-07)|all cancers(92;6.25e-06)|OV - Ovarian serous cystadenocarcinoma(223;0.0548)		TTGGGTGGAAGAAGACCATGG	0.438000													5	104					0	0	1	0	0
TTC12	54970	broad.mit.edu	37	11	113230727	113230727	+	Silent	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr11:113230727G>A	uc001pnu.2	+	18	1716	c.1611G>A	c.(1609-1611)CTG>CTA	p.L537L	TTC12_uc001pnv.2_Silent_p.L543L|TTC12_uc001pnw.2_RNA|TTC12_uc001pnx.2_Silent_p.L387L	NM_017868	NP_060338	Q9H892	TTC12_HUMAN	tetratricopeptide repeat domain 12	537							binding			pancreas(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)	4		all_cancers(61;2.73e-16)|all_epithelial(67;8.64e-10)|Melanoma(852;1.46e-05)|all_hematologic(158;0.00014)|Acute lymphoblastic leukemia(157;0.000967)|Breast(348;0.0101)|all_neural(223;0.0281)|Medulloblastoma(222;0.0425)|Prostate(24;0.183)|Renal(330;0.187)		BRCA - Breast invasive adenocarcinoma(274;5.3e-06)|Epithelial(105;8.37e-05)|all cancers(92;0.000694)		GAGGAATCCTGACAGTAAGTT	0.368000													5	12					0	0	1	0	0
REXO2	25996	broad.mit.edu	37	11	114320605	114320605	+	Nonsense_Mutation	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr11:114320605C>T	uc001poy.2	+	7	765	c.622C>T	c.(622-624)CAG>TAG	p.Q208*	REXO2_uc001poz.2_3'UTR	NM_015523	NP_056338	Q9Y3B8	ORN_HUMAN	small fragment nuclease precursor	208					nucleotide metabolic process	mitochondrion|nucleus	3'-5' exonuclease activity|nucleic acid binding				0		all_cancers(61;5.06e-12)|all_epithelial(67;5.3e-06)|all_hematologic(158;7.68e-05)|Acute lymphoblastic leukemia(157;0.000966)|Melanoma(852;0.00153)|Medulloblastoma(222;0.0523)|all_neural(223;0.0663)|Breast(348;0.0818)|Prostate(24;0.104)		BRCA - Breast invasive adenocarcinoma(274;2.65e-06)|Epithelial(105;6.09e-05)|all cancers(92;0.000494)		CAAAGAGCTTCAGTTTTACCG	0.338000													46	143					0	0	1	0	0
APOA4	337	broad.mit.edu	37	11	116692248	116692248	+	Nonsense_Mutation	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr11:116692248G>A	uc001pps.1	-	3	630	c.526C>T	c.(526-528)CAG>TAG	p.Q176*		NM_000482	NP_000473			apolipoprotein A-IV precursor												0	all_hematologic(175;0.0487)	Breast(348;0.0126)|Medulloblastoma(222;0.0425)|all_hematologic(158;0.0564)|all_neural(223;0.234)		BRCA - Breast invasive adenocarcinoma(274;8.54e-06)|Epithelial(105;1.62e-05)|all cancers(92;0.000165)|OV - Ovarian serous cystadenocarcinoma(223;0.148)		AGCGAGGCCTGCAGGCTGTCG	0.667000													71	203					0	0	1	0	0
DSCAML1	57453	broad.mit.edu	37	11	117303882	117303882	+	Missense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr11:117303882G>C	uc001prh.1	-	29	5180	c.5178C>G	c.(5176-5178)ATC>ATG	p.I1726M		NM_020693	NP_065744	Q8TD84	DSCL1_HUMAN	Down syndrome cell adhesion molecule like 1	1666	Cytoplasmic (Potential).				axonogenesis|brain development|cell fate determination|dorsal/ventral pattern formation|embryonic skeletal system morphogenesis|homophilic cell adhesion	cell surface|integral to membrane|plasma membrane	protein homodimerization activity			ovary(3)|large_intestine(2)|skin(2)|upper_aerodigestive_tract(1)	8	all_hematologic(175;0.0487)	Breast(348;0.0424)|Medulloblastoma(222;0.0523)|all_hematologic(192;0.232)		BRCA - Breast invasive adenocarcinoma(274;9.12e-06)|Epithelial(105;0.00172)		CTTTGTCCTCGATGAGCAGCT	0.567000													14	39					0	0	1	0	0
BCL9L	283149	broad.mit.edu	37	11	118772426	118772426	+	Missense_Mutation	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr11:118772426C>T	uc001pug.2	-	6	2991	c.2026G>A	c.(2026-2028)GAG>AAG	p.E676K	BCL9L_uc009zal.2_Missense_Mutation_p.E671K	NM_182557	NP_872363	Q86UU0	BCL9L_HUMAN	B-cell CLL/lymphoma 9-like	676					negative regulation of transforming growth factor beta receptor signaling pathway|positive regulation of epithelial to mesenchymal transition|positive regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent		transcription coactivator activity			ovary(1)|pancreas(1)	2	all_hematologic(175;0.0839)	Medulloblastoma(222;0.0425)|all_hematologic(192;0.103)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;7.66e-05)		AGCAGCTCCTCACGGACCCGG	0.652000													15	57					0	0	1	0	0
VPS11	55823	broad.mit.edu	37	11	118940948	118940948	+	Silent	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr11:118940948C>T	uc010ryx.1	+	5	519	c.477C>T	c.(475-477)TTC>TTT	p.F159F	VPS11_uc010ryy.1_Silent_p.F5F	NM_021729	NP_068375	Q9H270	VPS11_HUMAN	vacuolar protein sorting 11	159					protein transport	endocytic vesicle|HOPS complex|late endosome membrane|lysosomal membrane	nucleotide binding|protein binding|zinc ion binding			ovary(2)|central_nervous_system(1)	3	all_hematologic(175;0.0839)	Medulloblastoma(222;0.0425)|Breast(348;0.052)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;7.88e-05)		TTACAGGTTTCACAGATGGCA	0.453000													4	13					0	0	1	0	0
NLRX1	79671	broad.mit.edu	37	11	119053983	119053983	+	Silent	SNP	C	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr11:119053983C>A	uc001pvu.2	+	10	2978	c.2763C>A	c.(2761-2763)CTC>CTA	p.L921L	NLRX1_uc001pvv.2_Intron|NLRX1_uc001pvw.2_Silent_p.L921L|NLRX1_uc001pvx.2_Silent_p.L921L|PDZD3_uc001pvy.2_5'Flank|PDZD3_uc001pvz.2_5'Flank|PDZD3_uc010rzd.1_5'Flank|PDZD3_uc001pwa.2_5'Flank|PDZD3_uc001pwb.2_5'Flank	NM_024618	NP_078894	Q86UT6	NLRX1_HUMAN	NLR family member X1 isoform 1	921	Required for the repression of MAVS- induced interferon signaling.				innate immune response|interspecies interaction between organisms|negative regulation of type I interferon production	mitochondrial outer membrane	ATP binding			ovary(1)|skin(1)	2	all_hematologic(175;0.0977)	Medulloblastoma(222;0.0425)|Breast(348;0.052)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;7.7e-05)		AGCGGAACCTCAATAGCTGGG	0.612000													15	107					1.67942e-08	1.72442e-08	1	1	0
PDZD3	79849	broad.mit.edu	37	11	119059398	119059398	+	Missense_Mutation	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr11:119059398C>T	uc001pwb.2	+	7	1831	c.1307C>T	c.(1306-1308)TCG>TTG	p.S436L	PDZD3_uc001pvy.2_Missense_Mutation_p.S356L|PDZD3_uc001pvz.2_Missense_Mutation_p.S370L|PDZD3_uc010rzd.1_Missense_Mutation_p.S357L|PDZD3_uc001pwa.2_Missense_Mutation_p.S66L			Q86UT5	NHRF4_HUMAN	RecName: Full=Na(+)/H(+) exchange regulatory cofactor NHE-RF4;          Short=NHERF-4; AltName: Full=PDZ domain-containing protein 3; AltName: Full=PDZ domain-containing protein 2; AltName: Full=Intestinal and kidney-enriched PDZ protein; AltName: Full=Sodium-hydrogen exchanger regulatory factor 4;	436					cGMP-mediated signaling|ion transport|negative regulation of cGMP biosynthetic process|response to toxin|water transport	apical part of cell|brush border|cytosol|membrane fraction|subapical complex	guanylate cyclase inhibitor activity|ion channel inhibitor activity|protein C-terminus binding			breast(1)	1	all_hematologic(175;0.0977)	Medulloblastoma(222;0.0523)|Breast(348;0.174)|all_neural(223;0.224)		BRCA - Breast invasive adenocarcinoma(274;7.52e-05)		GCTCCCGCCTCGCCCCGGGGC	0.547000													26	59					0	0	1	0	0
RNF26	79102	broad.mit.edu	37	11	119207071	119207071	+	Silent	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr11:119207071C>T	uc001pwh.2	+	1	1835	c.1239C>T	c.(1237-1239)GTC>GTT	p.V413V		NM_032015	NP_114404	Q9BY78	RNF26_HUMAN	ring finger protein 26	413	RING-type.						zinc ion binding			ovary(1)	1		Medulloblastoma(222;0.0425)|Breast(348;0.052)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;3.8e-05)		GCCACCCCGTCTACCACCGCA	0.632000													50	131					0	0	1	0	0
GRIK4	2900	broad.mit.edu	37	11	120776193	120776193	+	Silent	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr11:120776193G>C	uc001pxn.2	+	13	1754	c.1467G>C	c.(1465-1467)CTG>CTC	p.L489L	GRIK4_uc009zav.1_Silent_p.L489L|GRIK4_uc009zaw.1_Silent_p.L489L|GRIK4_uc009zax.1_Silent_p.L489L	NM_014619	NP_055434	Q16099	GRIK4_HUMAN	glutamate receptor KA1 precursor	489	Extracellular (Potential).				glutamate signaling pathway|synaptic transmission	cell junction|postsynaptic membrane	extracellular-glutamate-gated ion channel activity|kainate selective glutamate receptor activity			ovary(2)|central_nervous_system(1)	3		Breast(109;0.000868)|Medulloblastoma(222;0.0453)|all_neural(223;0.116)|all_hematologic(192;0.21)		BRCA - Breast invasive adenocarcinoma(274;1.24e-05)|OV - Ovarian serous cystadenocarcinoma(223;0.116)	L-Glutamic Acid(DB00142)	TCGGGGAGCTGATCGCTAGGG	0.587000													30	124					0	0	1	0	0
TECTA	7007	broad.mit.edu	37	11	120989131	120989131	+	Missense_Mutation	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr11:120989131G>A	uc010rzo.1	+	6	907	c.907G>A	c.(907-909)GAG>AAG	p.E303K		NM_005422	NP_005413	O75443	TECTA_HUMAN	tectorin alpha precursor	303	VWFC.				cell-matrix adhesion|sensory perception of sound	anchored to membrane|plasma membrane|proteinaceous extracellular matrix				breast(6)|ovary(2)|skin(2)	10	all_hematologic(175;0.208)	Breast(109;0.000766)|Medulloblastoma(222;0.0427)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;8.04e-06)|OV - Ovarian serous cystadenocarcinoma(223;0.166)		TAGCCCCTACGAGGTGTGCGA	0.537000													29	87					0	0	1	0	0
OR6M1	390261	broad.mit.edu	37	11	123676287	123676287	+	Silent	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr11:123676287C>T	uc010rzz.1	-	1	771	c.771G>A	c.(769-771)GTG>GTA	p.V257V		NM_001005325	NP_001005325	Q8NGM8	OR6M1_HUMAN	olfactory receptor, family 6, subfamily M,	257	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)	2		Breast(109;0.0109)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.224)		BRCA - Breast invasive adenocarcinoma(274;4.88e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.028)		GATTGGGTCTCACATACACAA	0.512000													25	82					0	0	1	0	0
OR6T1	219874	broad.mit.edu	37	11	123813598	123813598	+	Silent	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr11:123813598C>T	uc010sab.1	-	1	948	c.948G>A	c.(946-948)CTG>CTA	p.L316L		NM_001005187	NP_001005187	Q8NGN1	OR6T1_HUMAN	olfactory receptor, family 6, subfamily T,	316	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1		Breast(109;0.00867)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.22)		BRCA - Breast invasive adenocarcinoma(274;4.88e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0401)		TTGTGACCCTCAGTTTCATCA	0.428000													31	150					0	0	1	0	0
OR10G7	390265	broad.mit.edu	37	11	123909252	123909252	+	Missense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr11:123909252G>C	uc001pzq.1	-	1	457	c.457C>G	c.(457-459)CTG>GTG	p.L153V		NM_001004463	NP_001004463	Q8NGN6	O10G7_HUMAN	olfactory receptor, family 10, subfamily G,	153	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)	2		Breast(109;0.00867)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.22)		BRCA - Breast invasive adenocarcinoma(274;4.88e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0521)		GCAGAGTGCAGAGAGCCACTG	0.567000													6	295					0	0	1	0	0
VSIG2	23584	broad.mit.edu	37	11	124621373	124621373	+	Missense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr11:124621373G>C	uc001qas.2	-	2	241	c.165C>G	c.(163-165)TTC>TTG	p.F55L	VSIG2_uc001qat.2_Missense_Mutation_p.F55L	NM_014312	NP_055127	Q96IQ7	VSIG2_HUMAN	V-set and immunoglobulin domain containing 2	55	Extracellular (Potential).|Ig-like V-type.					integral to plasma membrane|membrane fraction				ovary(3)|central_nervous_system(1)	4	all_hematologic(175;0.215)	Breast(109;0.00663)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.224)		BRCA - Breast invasive adenocarcinoma(274;1.49e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0215)		ACTCCAGGGCGAAGCTGTCTC	0.627000													37	104					0	0	1	0	0
ROBO4	54538	broad.mit.edu	37	11	124761385	124761385	+	Missense_Mutation	SNP	G	C	C	rs111626453	byFrequency	TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr11:124761385G>C	uc001qbg.2	-	12	1898	c.1758C>G	c.(1756-1758)ATC>ATG	p.I586M	ROBO4_uc010sas.1_Missense_Mutation_p.I441M|ROBO4_uc001qbh.2_Missense_Mutation_p.I476M|ROBO4_uc001qbi.2_Missense_Mutation_p.I144M|ROBO4_uc010sat.1_Missense_Mutation_p.I144M	NM_019055	NP_061928	Q8WZ75	ROBO4_HUMAN	roundabout homolog 4, magic roundabout	586					angiogenesis|cell differentiation	integral to membrane	receptor activity			ovary(1)|skin(1)	2	all_hematologic(175;0.215)	Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|Breast(109;0.171)|all_neural(223;0.224)		BRCA - Breast invasive adenocarcinoma(274;1.5e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0301)		GCAGCTCAGCGATGAGGGAGC	0.627000													6	45					0	0	1	0	0
CCDC15	80071	broad.mit.edu	37	11	124845006	124845006	+	Missense_Mutation	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr11:124845006G>A	uc001qbm.3	+	5	790	c.531G>A	c.(529-531)ATG>ATA	p.M177I		NM_025004	NP_079280	Q0P6D6	CCD15_HUMAN	coiled-coil domain containing 15	177	Potential.					centrosome				ovary(1)|central_nervous_system(1)	2	all_hematologic(175;0.215)	Breast(109;0.00222)|Lung NSC(97;0.0177)|all_lung(97;0.0179)|Medulloblastoma(222;0.0425)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;1.68e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0413)		GTGAAACTATGAAACAGGCAC	0.418000													5	25					0	0	1	0	0
FEZ1	9638	broad.mit.edu	37	11	125325883	125325883	+	Missense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr11:125325883C>G	uc001qbx.2	-	6	939	c.787G>C	c.(787-789)GAG>CAG	p.E263Q	FEZ1_uc001qbw.2_Missense_Mutation_p.E53Q|FEZ1_uc010sbc.1_Missense_Mutation_p.E234Q	NM_005103	NP_005094	Q99689	FEZ1_HUMAN	zygin 1 isoform 1	263	Potential.				axon guidance|cell adhesion|transport	microtubule|plasma membrane				central_nervous_system(3)|ovary(1)	4	all_hematologic(175;0.228)	Breast(109;0.0021)|Lung NSC(97;0.0126)|all_lung(97;0.0132)|Medulloblastoma(222;0.0425)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;1.49e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0934)		ACTTCCTTCTCAAACTCCAGC	0.557000													28	92					0	0	1	0	0
APLP2	334	broad.mit.edu	37	11	129979462	129979462	+	Missense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr11:129979462G>C	uc010sby.1	+	2	401	c.244G>C	c.(244-246)GAA>CAA	p.E82Q	APLP2_uc001qfp.2_Missense_Mutation_p.E82Q|APLP2_uc001qfq.2_Missense_Mutation_p.E82Q|APLP2_uc010sbz.1_Intron|APLP2_uc001qfr.2_Intron|APLP2_uc001qfs.2_Missense_Mutation_p.E82Q|APLP2_uc001qfv.2_Missense_Mutation_p.E29Q	NM_001642	NP_001633	Q06481	APLP2_HUMAN	amyloid beta (A4) precursor-like protein 2	82	Extracellular (Potential).				G-protein coupled receptor protein signaling pathway	integral to membrane|nucleus|plasma membrane	DNA binding|identical protein binding|serine-type endopeptidase inhibitor activity			ovary(3)	3	all_hematologic(175;0.0429)	Breast(109;0.00586)|Lung NSC(97;0.00785)|all_lung(97;0.0154)|Medulloblastoma(222;0.0523)|all_neural(223;0.186)		OV - Ovarian serous cystadenocarcinoma(99;0.0197)|Lung(977;0.24)		GAGCTGCTTTGAAACAAAAGA	0.418000													16	49					0	0	1	0	0
SPATA19	219938	broad.mit.edu	37	11	133711958	133711958	+	Missense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr11:133711958C>G	uc001qgv.1	-	6	531	c.480G>C	c.(478-480)ATG>ATC	p.M160I		NM_174927	NP_777587	Q7Z5L4	SPT19_HUMAN	spermatogenesis associated 19 precursor	160					cell differentiation|multicellular organismal development|spermatogenesis	mitochondrial outer membrane					0	all_hematologic(175;0.127)	all_cancers(12;5.59e-17)|all_epithelial(12;2.65e-12)|all_lung(97;0.00045)|Lung NSC(97;0.000861)|Breast(109;0.000873)|Medulloblastoma(222;0.0425)|Esophageal squamous(93;0.0844)|all_neural(223;0.117)		Epithelial(10;4.36e-10)|all cancers(11;7.1e-09)|BRCA - Breast invasive adenocarcinoma(10;8.45e-09)|OV - Ovarian serous cystadenocarcinoma(99;0.00286)|Lung(977;0.207)		AGGAGGGTCTCATACTGAAGT	0.572000													45	129					0	0	1	0	0
NCAPD3	23310	broad.mit.edu	37	11	134027950	134027950	+	Silent	SNP	C	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr11:134027950C>A	uc001qhd.1	-	31	4653	c.4047G>T	c.(4045-4047)CTG>CTT	p.L1349L	NCAPD3_uc010scm.1_RNA|NCAPD3_uc009zda.1_RNA|NCAPD3_uc001qhc.1_Silent_p.L299L	NM_015261	NP_056076	P42695	CNDD3_HUMAN	non-SMC condensin II complex, subunit D3	1349					cell division|mitotic chromosome condensation	nuclear centromeric heterochromatin|nuclear condensin complex	methylated histone residue binding			ovary(2)|upper_aerodigestive_tract(1)|lung(1)|kidney(1)	5	all_hematologic(175;0.127)	all_cancers(12;1.68e-21)|all_epithelial(12;5.86e-16)|all_lung(97;1.19e-05)|Lung NSC(97;2.76e-05)|Breast(109;0.000182)|Medulloblastoma(222;0.0245)|all_neural(223;0.0505)|Esophageal squamous(93;0.0559)		Epithelial(10;8.74e-10)|BRCA - Breast invasive adenocarcinoma(10;1e-08)|all cancers(11;1.46e-08)|OV - Ovarian serous cystadenocarcinoma(99;0.00345)|Lung(977;0.227)		CAATGGTGCTCAGGGACATGG	0.552000													24	122					5.35356e-11	5.52444e-11	1	1	0
NCAPD3	23310	broad.mit.edu	37	11	134047138	134047138	+	Silent	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr11:134047138G>A	uc001qhd.1	-	23	3603	c.2997C>T	c.(2995-2997)CTC>CTT	p.L999L	NCAPD3_uc010scm.1_RNA|NCAPD3_uc009zda.1_RNA	NM_015261	NP_056076	P42695	CNDD3_HUMAN	non-SMC condensin II complex, subunit D3	999	HEAT 4.				cell division|mitotic chromosome condensation	nuclear centromeric heterochromatin|nuclear condensin complex	methylated histone residue binding			ovary(2)|upper_aerodigestive_tract(1)|lung(1)|kidney(1)	5	all_hematologic(175;0.127)	all_cancers(12;1.68e-21)|all_epithelial(12;5.86e-16)|all_lung(97;1.19e-05)|Lung NSC(97;2.76e-05)|Breast(109;0.000182)|Medulloblastoma(222;0.0245)|all_neural(223;0.0505)|Esophageal squamous(93;0.0559)		Epithelial(10;8.74e-10)|BRCA - Breast invasive adenocarcinoma(10;1e-08)|all cancers(11;1.46e-08)|OV - Ovarian serous cystadenocarcinoma(99;0.00345)|Lung(977;0.227)		TAAGCAAGATGAGTGTCTGCT	0.478000													22	66					0	0	1	0	0
KDM5A	5927	broad.mit.edu	37	12	463316	463316	+	Missense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr12:463316G>C	uc001qif.1	-	8	1318	c.955C>G	c.(955-957)CAT>GAT	p.H319D	KDM5A_uc001qie.1_Missense_Mutation_p.H319D|KDM5A_uc010sdn.1_Missense_Mutation_p.H278D|KDM5A_uc010sdo.1_Intron	NM_001042603	NP_001036068	P29375	KDM5A_HUMAN	retinoblastoma binding protein 2 isoform 1	319	PHD-type 1.				chromatin modification|multicellular organismal development|positive regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter	cytoplasm|nucleolus	DNA binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|sequence-specific DNA binding transcription factor activity|zinc ion binding			skin(2)|ovary(1)	3						CAAAATGTATGATAGCTGTCA	0.403000			T 	NUP98	AML								14	67					0	0	1	0	0
KDM5A	5927	broad.mit.edu	37	12	464397	464397	+	Missense_Mutation	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr12:464397C>T	uc001qif.1	-	7	1160	c.797G>A	c.(796-798)CGA>CAA	p.R266Q	KDM5A_uc001qie.1_Missense_Mutation_p.R266Q|KDM5A_uc010sdn.1_Missense_Mutation_p.R225Q|KDM5A_uc010sdo.1_Intron	NM_001042603	NP_001036068	P29375	KDM5A_HUMAN	retinoblastoma binding protein 2 isoform 1	266					chromatin modification|multicellular organismal development|positive regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter	cytoplasm|nucleolus	DNA binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|sequence-specific DNA binding transcription factor activity|zinc ion binding			skin(2)|ovary(1)	3						GGTAACTTTTCGTCTTCGGGT	0.294000			T 	NUP98	AML								20	104					0	0	1	0	0
CCDC77	84318	broad.mit.edu	37	12	550094	550094	+	Missense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr12:550094G>C	uc001qig.2	+	12	1432	c.1252G>C	c.(1252-1254)GAA>CAA	p.E418Q	CCDC77_uc009zdk.2_Missense_Mutation_p.E386Q|CCDC77_uc010sdp.1_Missense_Mutation_p.E386Q|CCDC77_uc010sdq.1_Missense_Mutation_p.E386Q	NM_032358	NP_115734	Q9BR77	CCD77_HUMAN	coiled-coil domain containing 77 isoform a	418	Potential.					centrosome				ovary(1)	1	all_cancers(10;0.0149)|all_epithelial(11;0.035)|all_lung(10;0.111)|Ovarian(42;0.142)|Lung NSC(10;0.156)		OV - Ovarian serous cystadenocarcinoma(31;0.00123)|BRCA - Breast invasive adenocarcinoma(9;0.033)			CCTGGAAGTAGAAGGCTTTAA	0.433000													15	65					0	0	1	0	0
ERC1	23085	broad.mit.edu	37	12	1372230	1372230	+	Missense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr12:1372230G>C	uc001qjb.2	+	14	2759	c.2518G>C	c.(2518-2520)GAA>CAA	p.E840Q	ERC1_uc001qiz.2_RNA|ERC1_uc001qjc.2_Missense_Mutation_p.E812Q|ERC1_uc001qja.2_Intron|ERC1_uc001qjd.2_RNA|ERC1_uc001qjf.2_Missense_Mutation_p.E840Q|ERC1_uc010sdv.1_Intron|ERC1_uc001qje.2_RNA	NM_178040	NP_829884	Q8IUD2	RB6I2_HUMAN	RAB6-interacting protein 2 isoform epsilon	840	Potential.				I-kappaB phosphorylation|multicellular organismal development|positive regulation of anti-apoptosis|positive regulation of NF-kappaB transcription factor activity|protein transport	Golgi membrane|IkappaB kinase complex|presynaptic membrane	leucine zipper domain binding			ovary(2)|lung(2)|breast(1)	5	all_epithelial(11;0.0698)|Ovarian(42;0.107)		OV - Ovarian serous cystadenocarcinoma(31;0.00239)|BRCA - Breast invasive adenocarcinoma(9;0.0567)			TGACAGGATTGAAGAGCTGGA	0.428000													14	47					0	0	1	0	0
ERC1	23085	broad.mit.edu	37	12	1372286	1372286	+	Missense_Mutation	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr12:1372286G>A	uc001qjb.2	+	14	2815	c.2574G>A	c.(2572-2574)ATG>ATA	p.M858I	ERC1_uc001qiz.2_RNA|ERC1_uc001qjc.2_Missense_Mutation_p.M830I|ERC1_uc001qja.2_Intron|ERC1_uc001qjd.2_RNA|ERC1_uc001qjf.2_Missense_Mutation_p.M858I|ERC1_uc010sdv.1_Intron|ERC1_uc001qje.2_RNA	NM_178040	NP_829884	Q8IUD2	RB6I2_HUMAN	RAB6-interacting protein 2 isoform epsilon	858	Potential.				I-kappaB phosphorylation|multicellular organismal development|positive regulation of anti-apoptosis|positive regulation of NF-kappaB transcription factor activity|protein transport	Golgi membrane|IkappaB kinase complex|presynaptic membrane	leucine zipper domain binding			ovary(2)|lung(2)|breast(1)	5	all_epithelial(11;0.0698)|Ovarian(42;0.107)		OV - Ovarian serous cystadenocarcinoma(31;0.00239)|BRCA - Breast invasive adenocarcinoma(9;0.0567)			AGCGGGAAATGGTGCTAGCAC	0.443000													12	62					0	0	1	0	0
CACNA1C	775	broad.mit.edu	37	12	2690928	2690928	+	Missense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr12:2690928G>C	uc009zdu.1	+	14	2381	c.2068G>C	c.(2068-2070)GAT>CAT	p.D690H	CACNA1C_uc009zdv.1_Missense_Mutation_p.D687H|CACNA1C_uc001qkb.2_Missense_Mutation_p.D690H|CACNA1C_uc001qkc.2_Missense_Mutation_p.D690H|CACNA1C_uc001qke.2_Missense_Mutation_p.D690H|CACNA1C_uc001qkf.2_Missense_Mutation_p.D690H|CACNA1C_uc001qjz.2_Missense_Mutation_p.D690H|CACNA1C_uc001qkd.2_Missense_Mutation_p.D690H|CACNA1C_uc001qkg.2_Missense_Mutation_p.D690H|CACNA1C_uc009zdw.1_Missense_Mutation_p.D690H|CACNA1C_uc001qkh.2_Missense_Mutation_p.D690H|CACNA1C_uc001qkl.2_Missense_Mutation_p.D690H|CACNA1C_uc001qkn.2_Missense_Mutation_p.D690H|CACNA1C_uc001qko.2_Missense_Mutation_p.D690H|CACNA1C_uc001qkp.2_Missense_Mutation_p.D690H|CACNA1C_uc001qkr.2_Missense_Mutation_p.D690H|CACNA1C_uc001qku.2_Missense_Mutation_p.D690H|CACNA1C_uc001qkq.2_Missense_Mutation_p.D690H|CACNA1C_uc001qks.2_Missense_Mutation_p.D690H|CACNA1C_uc001qkt.2_Missense_Mutation_p.D690H|CACNA1C_uc001qka.1_Missense_Mutation_p.D225H|CACNA1C_uc001qki.1_Missense_Mutation_p.D426H|CACNA1C_uc001qkj.1_Missense_Mutation_p.D426H|CACNA1C_uc001qkk.1_Missense_Mutation_p.D426H|CACNA1C_uc001qkm.1_Missense_Mutation_p.D426H|CACNA1C_uc001qkw.2_5'Flank	NM_199460	NP_955630	Q13936	CAC1C_HUMAN	calcium channel, voltage-dependent, L type,	690	II.|Extracellular (Potential).				axon guidance|calcium ion transport into cytosol|energy reserve metabolic process|regulation of insulin secretion	cytoplasm|postsynaptic density|voltage-gated calcium channel complex	calmodulin binding|voltage-gated calcium channel activity			ovary(10)|central_nervous_system(1)	11			OV - Ovarian serous cystadenocarcinoma(31;0.00256)	LUAD - Lung adenocarcinoma(1;0.134)	Ibutilide(DB00308)|Isradipine(DB00270)|Magnesium Sulfate(DB00653)|Mibefradil(DB01388)|Nicardipine(DB00622)|Verapamil(DB00661)	GAGCACATTCGATAACTTCCC	0.458000													10	37					0	0	1	0	0
CACNA1C	775	broad.mit.edu	37	12	2719826	2719826	+	Silent	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr12:2719826C>T	uc009zdu.1	+	29	4051	c.3738C>T	c.(3736-3738)TTC>TTT	p.F1246F	CACNA1C_uc009zdv.1_Silent_p.F1223F|CACNA1C_uc001qkb.2_Silent_p.F1226F|CACNA1C_uc001qkc.2_Silent_p.F1226F|CACNA1C_uc001qke.2_Silent_p.F1226F|CACNA1C_uc001qkf.2_Silent_p.F1226F|CACNA1C_uc001qjz.2_Silent_p.F1226F|CACNA1C_uc001qkd.2_Silent_p.F1226F|CACNA1C_uc001qkg.2_Silent_p.F1226F|CACNA1C_uc009zdw.1_Silent_p.F1226F|CACNA1C_uc001qkh.2_Silent_p.F1226F|CACNA1C_uc001qkl.2_Silent_p.F1246F|CACNA1C_uc001qkn.2_Silent_p.F1226F|CACNA1C_uc001qko.2_Silent_p.F1246F|CACNA1C_uc001qkp.2_Silent_p.F1226F|CACNA1C_uc001qkr.2_Silent_p.F1226F|CACNA1C_uc001qku.2_Silent_p.F1226F|CACNA1C_uc001qkq.2_Silent_p.F1226F|CACNA1C_uc001qks.2_Silent_p.F1226F|CACNA1C_uc001qkt.2_Silent_p.F1226F|CACNA1C_uc001qka.1_Silent_p.F761F|CACNA1C_uc001qki.1_Silent_p.F962F|CACNA1C_uc001qkj.1_Silent_p.F962F|CACNA1C_uc001qkk.1_Silent_p.F962F|CACNA1C_uc001qkm.1_Silent_p.F962F	NM_199460	NP_955630	Q13936	CAC1C_HUMAN	calcium channel, voltage-dependent, L type,	1246	Helical; Name=S1 of repeat IV; (Potential).|IV.				axon guidance|calcium ion transport into cytosol|energy reserve metabolic process|regulation of insulin secretion	cytoplasm|postsynaptic density|voltage-gated calcium channel complex	calmodulin binding|voltage-gated calcium channel activity			ovary(10)|central_nervous_system(1)	11			OV - Ovarian serous cystadenocarcinoma(31;0.00256)	LUAD - Lung adenocarcinoma(1;0.134)	Ibutilide(DB00308)|Isradipine(DB00270)|Magnesium Sulfate(DB00653)|Mibefradil(DB01388)|Nicardipine(DB00622)|Verapamil(DB00661)	ACCTGATGTTCGTCCTCATCC	0.587000													15	51					0	0	1	0	0
FKBP4	2288	broad.mit.edu	37	12	2908402	2908402	+	Silent	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr12:2908402C>G	uc001qkz.2	+	5	861	c.663C>G	c.(661-663)CTC>CTG	p.L221L		NM_002014	NP_002005	Q02790	FKBP4_HUMAN	FK506 binding protein 52	221	PPIase FKBP-type 2.				negative regulation of microtubule polymerization or depolymerization|negative regulation of neuron projection development|protein folding	axonal growth cone|cytosol|membrane|microtubule|nucleus	FK506 binding|heat shock protein binding|peptidyl-prolyl cis-trans isomerase activity|protein binding, bridging				0			OV - Ovarian serous cystadenocarcinoma(31;0.00105)		Dimethyl sulfoxide(DB01093)	TCGTGTACCTCAAGCCCAGGT	0.502000													28	96					0	0	1	0	0
DYRK4	8798	broad.mit.edu	37	12	4721767	4721767	+	Missense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr12:4721767C>G	uc001qmx.2	+	12	1364	c.1204C>G	c.(1204-1206)CAG>GAG	p.Q402E	DYRK4_uc009zeh.1_Missense_Mutation_p.Q517E|DYRK4_uc001qmy.1_Missense_Mutation_p.Q402E|DYRK4_uc001qmz.1_Missense_Mutation_p.Q116E|DYRK4_uc001qna.1_Missense_Mutation_p.Q39E|DYRK4_uc010ser.1_Missense_Mutation_p.Q39E	NM_003845	NP_003836	Q9NR20	DYRK4_HUMAN	dual-specificity tyrosine-(Y)-phosphorylation	402						Golgi apparatus	ATP binding|metal ion binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			lung(2)|skin(1)	3			Colorectal(7;0.103)			TTGGATTCATCAGTCTCGGAA	0.527000													4	134					0	0	1	0	0
KCNA1	3736	broad.mit.edu	37	12	5020587	5020588	+	Missense_Mutation	DNP	GC	CT	CT			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr12:5020587_5020588GC>CT	uc001qnh.2	+	2	1148_1149	c.43_44GC>CT	c.(43-45)GCC>CTC	p.A15L		NM_000217	NP_000208	Q09470	KCNA1_HUMAN	potassium voltage-gated channel subfamily A	15					synaptic transmission	juxtaparanode region of axon|voltage-gated potassium channel complex	delayed rectifier potassium channel activity|potassium ion transmembrane transporter activity			ovary(1)|skin(1)	2					Desflurane(DB01189)|Enflurane(DB00228)|Isoflurane(DB00753)|Methoxyflurane(DB01028)|Sevoflurane(DB01236)	GGCTTCGGCCGCCCCGGGCCAC	0.713000													13	31					0	0	1	0	0
NCAPD2	9918	broad.mit.edu	37	12	6639978	6639978	+	Missense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr12:6639978C>G	uc001qoo.2	+	30	4005	c.3959C>G	c.(3958-3960)TCC>TGC	p.S1320C	NCAPD2_uc010sfd.1_Missense_Mutation_p.S1275C	NM_014865	NP_055680	Q15021	CND1_HUMAN	non-SMC condensin I complex, subunit D2	1320					cell division|mitotic chromosome condensation	condensin core heterodimer|cytoplasm	histone binding			ovary(2)|lung(1)|breast(1)|kidney(1)	5						AAGAAACCATCCACTGGTACG	0.532000													27	71					0	0	1	0	0
GAPDH	2597	broad.mit.edu	37	12	6646823	6646823	+	Missense_Mutation	SNP	G	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr12:6646823G>T	uc001qop.1	+	8	701	c.599G>T	c.(598-600)CGC>CTC	p.R200L	GAPDH_uc009zep.1_Missense_Mutation_p.R158L|GAPDH_uc001qoq.1_Missense_Mutation_p.R125L|GAPDH_uc001qor.1_Missense_Mutation_p.R159L|GAPDH_uc001qos.1_Missense_Mutation_p.R200L|GAPDH_uc001qot.1_Missense_Mutation_p.R200L|GAPDH_uc001qou.1_Missense_Mutation_p.R159L|GAPDH_uc001qov.1_Missense_Mutation_p.R158L|GAPDH_uc001qow.1_Missense_Mutation_p.R153L|GAPDH_uc001qox.1_Missense_Mutation_p.R26L	NM_002046	NP_002037	P04406	G3P_HUMAN	glyceraldehyde-3-phosphate dehydrogenase	200					gluconeogenesis|glycolysis|neuron apoptosis|peptidyl-cysteine S-trans-nitrosylation|protein stabilization	cytosol|membrane|nucleus|perinuclear region of cytoplasm	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity|NAD binding|peptidyl-cysteine S-nitrosylase activity|protein binding				0					NADH(DB00157)	CGTGATGGCCGCGGGGCTCTC	0.622000											OREG0021628	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	16	42					4.7546e-09	4.88687e-09	1	1	0
CHD4	1108	broad.mit.edu	37	12	6696598	6696598	+	Missense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr12:6696598C>G	uc001qpo.2	-	25	3995	c.3831G>C	c.(3829-3831)TTG>TTC	p.L1277F	CHD4_uc001qpn.2_Missense_Mutation_p.L1270F|CHD4_uc001qpp.2_Missense_Mutation_p.L1274F	NM_001273	NP_001264	Q14839	CHD4_HUMAN	chromodomain helicase DNA binding protein 4	1277					chromatin modification|regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	microtubule organizing center|NuRD complex	ATP binding|ATP-dependent DNA helicase activity|DNA binding|zinc ion binding			central_nervous_system(2)	2						TGAATGAGCTCAAATATTCAT	0.458000													6	179					0	0	1	0	0
ZNF384	171017	broad.mit.edu	37	12	6782423	6782423	+	Silent	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr12:6782423C>T	uc010sfh.1	-	7	1078	c.870G>A	c.(868-870)GAG>GAA	p.E290E	ZNF384_uc001qpz.2_Silent_p.E290E|ZNF384_uc001qqa.2_Silent_p.E290E|ZNF384_uc001qqb.2_Silent_p.E274E|ZNF384_uc001qqc.2_Silent_p.E290E|ZNF384_uc001qqd.2_Silent_p.E235E|ZNF384_uc001qqe.2_Silent_p.E274E|ZNF384_uc009zew.1_Silent_p.E176E	NM_001135734	NP_001129206	Q8TF68	ZN384_HUMAN	nuclear matrix transcription factor 4 isoform d	290	C2H2-type 3.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding		EWSR1/ZNF384(4)	haematopoietic_and_lymphoid_tissue(4)|central_nervous_system(3)|kidney(1)	8						GGAAGGATTTCTCACAGAAGT	0.562000			T	EWSR1|TAF15 	ALL								9	43					0	0	1	0	0
GNB3	2784	broad.mit.edu	37	12	6954849	6954849	+	Missense_Mutation	SNP	G	A	A	rs150593798		TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr12:6954849G>A	uc001qrd.2	+	10	1204	c.799G>A	c.(799-801)GAG>AAG	p.E267K	GNB3_uc001qrc.2_Missense_Mutation_p.E223K|GNB3_uc009zfe.2_Missense_Mutation_p.E266K|CDCA3_uc001qre.2_3'UTR|uc001qrf.1_RNA	NM_002075	NP_002066	P16520	GBB3_HUMAN	guanine nucleotide-binding protein, beta-3	267					cellular response to glucagon stimulus|energy reserve metabolic process|G-protein coupled receptor protein signaling pathway|regulation of blood pressure|synaptic transmission	plasma membrane	GTPase activity|GTPase binding|signal transducer activity				0						CTTCTCCCACGAGAGCATCAT	0.592000													73	221					0	0	1	0	0
CD163	9332	broad.mit.edu	37	12	7633798	7633798	+	Missense_Mutation	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr12:7633798G>A	uc001qsz.3	-	15	3430	c.3302C>T	c.(3301-3303)TCT>TTT	p.S1101F	CD163_uc001qta.3_Missense_Mutation_p.S1101F|CD163_uc009zfw.2_Missense_Mutation_p.S1134F	NM_004244	NP_004235	Q86VB7	C163A_HUMAN	CD163 antigen isoform a	1101	Cytoplasmic (Potential).				acute-phase response	extracellular region|integral to plasma membrane	protein binding|scavenger receptor activity			ovary(6)|pancreas(1)|skin(1)	8						ATTCAGGCAAGAATTCATCTC	0.453000													25	88					0	0	1	0	0
SLC2A3	6515	broad.mit.edu	37	12	8077074	8077074	+	Missense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr12:8077074G>C	uc001qtr.2	-	8	1262	c.1000C>G	c.(1000-1002)CTG>GTG	p.L334V		NM_006931	NP_008862	P11169	GTR3_HUMAN	solute carrier family 2 (facilitated glucose	334	Cytoplasmic (Potential).				carbohydrate metabolic process|water-soluble vitamin metabolic process	integral to membrane|plasma membrane	D-glucose transmembrane transporter activity|dehydroascorbic acid transporter activity			ovary(3)|pancreas(1)	4				Kidney(36;0.0866)		ATCATATGCAGAGTCCTTCTT	0.423000													4	179					0	0	1	0	0
SLC2A3	6515	broad.mit.edu	37	12	8085688	8085688	+	Missense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr12:8085688G>C	uc001qtr.2	-	3	426	c.164C>G	c.(163-165)TCT>TGT	p.S55C	SLC2A3_uc001qts.2_Missense_Mutation_p.S55C	NM_006931	NP_008862	P11169	GTR3_HUMAN	solute carrier family 2 (facilitated glucose	55	Extracellular (Potential).				carbohydrate metabolic process|water-soluble vitamin metabolic process	integral to membrane|plasma membrane	D-glucose transmembrane transporter activity|dehydroascorbic acid transporter activity			ovary(3)|pancreas(1)	4				Kidney(36;0.0866)		CAGCACCTCAGAGGGTGGGGC	0.478000											OREG0021656	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	26	175					0	0	1	0	0
M6PR	4074	broad.mit.edu	37	12	9095088	9095088	+	Missense_Mutation	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr12:9095088C>T	uc001qvf.2	-	6	805	c.635G>A	c.(634-636)CGA>CAA	p.R212Q		NM_002355	NP_002346	P20645	MPRD_HUMAN	cation-dependent mannose-6-phosphate receptor	212	Cytoplasmic (Potential).				endosome to lysosome transport|receptor-mediated endocytosis	cell surface|endosome|integral to plasma membrane|lysosomal membrane	mannose binding|mannose transmembrane transporter activity|transmembrane receptor activity				0		Hepatocellular(102;0.137)		BRCA - Breast invasive adenocarcinoma(232;0.0146)		CACTACCAGTCGCTGGTATAG	0.468000													33	101					0	0	1	0	0
TAS2R19	259294	broad.mit.edu	37	12	11174553	11174553	+	Silent	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr12:11174553G>C	uc010shj.1	-	1	618	c.618C>G	c.(616-618)CTC>CTG	p.L206L	PRR4_uc009zhp.2_Intron|PRH1_uc001qzb.3_Intron|PRH1_uc001qzc.2_Intron|PRB4_uc001qzf.1_Intron|PRH1_uc001qzj.2_Intron	NM_176888	NP_795369	P59542	T2R19_HUMAN	taste receptor, type 2, member 19	206	Cytoplasmic (Potential).				sensory perception of taste	integral to membrane	G-protein coupled receptor activity			skin(1)	1						GCATCTTCTTGAGATGTTTAC	0.413000													7	226					0	0	1	0	0
Unknown	0	broad.mit.edu	37	12	13068854	13068854	+	RNA	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr12:13068854C>T	uc001rbb.3	+	1		c.729C>T								Homo sapiens TVAS4 mRNA, PBMC-based diagnostic gene marker for vasculitis.																		GGTTGCTGCTCATTTGAGCAG	0.512000													17	49					0	0	1	0	0
GRIN2B	2904	broad.mit.edu	37	12	13768193	13768193	+	Missense_Mutation	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr12:13768193C>T	uc001rbt.2	-	7	1688	c.1509G>A	c.(1507-1509)ATG>ATA	p.M503I		NM_000834	NP_000825	Q13224	NMDE2_HUMAN	N-methyl-D-aspartate receptor subunit 2B	503	Extracellular (Potential).				response to ethanol	cell junction|N-methyl-D-aspartate selective glutamate receptor complex|outer membrane-bounded periplasmic space|postsynaptic membrane	glycine binding|N-methyl-D-aspartate selective glutamate receptor activity|zinc ion binding			central_nervous_system(4)|ovary(3)|skin(3)|lung(2)	12					Felbamate(DB00949)|Haloperidol(DB00502)|L-Glutamic Acid(DB00142)|Loperamide(DB00836)|Memantine(DB01043)	AGGCCCTCTTCATGACCACCT	0.493000													15	63					0	0	1	0	0
ERP27	121506	broad.mit.edu	37	12	15090974	15090974	+	Missense_Mutation	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr12:15090974G>A	uc001rco.2	-	2	128	c.107C>T	c.(106-108)GCT>GTT	p.A36V		NM_152321	NP_689534	Q96DN0	ERP27_HUMAN	endoplasmic reticulum protein 27 kDa precursor	36						endoplasmic reticulum lumen				breast(1)	1						TTCCTGGGCAGCACCAGGACC	0.493000													4	142					0	0	1	0	0
SLCO1C1	53919	broad.mit.edu	37	12	20854329	20854329	+	Missense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr12:20854329G>C	uc001rej.3	+	4	562	c.207G>C	c.(205-207)CAG>CAC	p.Q69H	SLCO1C1_uc010sii.1_Missense_Mutation_p.Q69H|SLCO1C1_uc010sij.1_Missense_Mutation_p.Q69H|SLCO1C1_uc009zip.2_Intron|SLCO1C1_uc001rei.2_Missense_Mutation_p.Q69H|SLCO1C1_uc010sik.1_Intron	NM_017435	NP_059131	Q9NYB5	SO1C1_HUMAN	solute carrier organic anion transporter family,	69	Extracellular (Potential).				sodium-independent organic anion transport	integral to membrane|plasma membrane	thyroid hormone transmembrane transporter activity			ovary(5)|pancreas(1)|skin(1)	7	Esophageal squamous(101;0.149)					CCATCACTCAGATAGAGAGAA	0.408000													40	111					0	0	1	0	0
LDHB	3945	broad.mit.edu	37	12	21790116	21790116	+	Silent	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr12:21790116G>A	uc001rfc.2	-	6	744	c.726C>T	c.(724-726)GTC>GTT	p.V242V	LDHB_uc001rfd.2_Silent_p.V242V|LDHB_uc001rfe.2_Silent_p.V242V	NM_002300	NP_002291	P07195	LDHB_HUMAN	L-lactate dehydrogenase B	242					glycolysis|pyruvate metabolic process	cytosol	L-lactate dehydrogenase activity			breast(2)|ovary(1)	3					NADH(DB00157)	TTAGCTTGATGACTTCATAGG	0.269000													27	90					0	0	1	0	0
DDX11	1663	broad.mit.edu	37	12	31244671	31244671	+	Nonsense_Mutation	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr12:31244671C>T	uc001rjt.1	+	10	1359	c.1108C>T	c.(1108-1110)CAG>TAG	p.Q370*	DDX11_uc010sjx.1_RNA|DDX11_uc001rjr.1_Nonsense_Mutation_p.Q370*|DDX11_uc001rjs.1_Nonsense_Mutation_p.Q370*|DDX11_uc001rju.1_Nonsense_Mutation_p.Q48*|DDX11_uc001rjv.1_Nonsense_Mutation_p.Q370*|DDX11_uc001rjw.1_Nonsense_Mutation_p.Q344*|DDX11_uc001rjx.1_Nonsense_Mutation_p.Q48*|DDX11_uc009zjn.1_RNA	NM_152438	NP_689651	Q96FC9	DDX11_HUMAN	DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 11	370	Helicase ATP-binding.				G2/M transition of mitotic cell cycle|interspecies interaction between organisms|mitotic sister chromatid segregation|positive regulation of cell proliferation|S phase of mitotic cell cycle|sister chromatid cohesion	midbody|nuclear chromatin|nucleolus|spindle pole	ATP binding|ATP-dependent DNA helicase activity|DNA binding|protein binding|RNA binding			breast(3)	3	all_cancers(9;1.77e-11)|all_lung(12;6.21e-11)|all_epithelial(9;6.49e-11)|Lung NSC(12;1.06e-08)|Acute lymphoblastic leukemia(23;0.0122)|all_hematologic(23;0.0429)|Lung SC(12;0.0592)|Esophageal squamous(101;0.233)					GCTGCCCTATCAGATGCTGCT	0.657000										Multiple Myeloma(12;0.14)			7	14					0	0	1	0	0
Unknown	0	broad.mit.edu	37	12	31292087	31292087	+	Nonsense_Mutation	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr12:31292087G>A	uc010sjy.1	-	14	1882	c.1882C>T	c.(1882-1884)CAG>TAG	p.Q628*						RecName: Full=Ovostatin homolog 1; Flags: Precursor;																		ATATCCCTCTGAGGAATGCAA	0.388000													24	87					0	0	1	0	0
DNM1L	10059	broad.mit.edu	37	12	32890800	32890800	+	Missense_Mutation	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr12:32890800C>T	uc001rld.2	+	15	1759	c.1598C>T	c.(1597-1599)TCT>TTT	p.S533F	DNM1L_uc001rle.2_Intron|DNM1L_uc001rlf.2_Intron|DNM1L_uc010skh.1_Missense_Mutation_p.S599F|DNM1L_uc001rlg.2_Missense_Mutation_p.S599F|DNM1L_uc001rlh.2_Missense_Mutation_p.S586F|DNM1L_uc010ski.1_Missense_Mutation_p.S330F	NM_012062	NP_036192	O00429	DNM1L_HUMAN	dynamin 1-like isoform 1	533	Interaction with GSK3B.|B domain.				cellular component disassembly involved in apoptosis|mitochondrial fragmentation involved in apoptosis|mitochondrial membrane organization|positive regulation of mitochondrial fission	cis-Golgi network|cytosol|endomembrane system|endoplasmic reticulum|mitochondrial outer membrane	GTP binding|GTPase activity|ubiquitin protein ligase binding			ovary(1)|pancreas(1)	2	Lung NSC(5;2.15e-06)|Acute lymphoblastic leukemia(23;0.0122)|all_hematologic(23;0.0429)|Esophageal squamous(101;0.239)					TGCCTTTAGTCTTCTAAAGTT	0.433000													27	105					0	0	1	0	0
KIF21A	55605	broad.mit.edu	37	12	39760894	39760894	+	Missense_Mutation	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr12:39760894G>A	uc001rly.2	-	5	819	c.673C>T	c.(673-675)CGT>TGT	p.R225C	KIF21A_uc001rlx.2_Missense_Mutation_p.R225C|KIF21A_uc001rlz.2_Missense_Mutation_p.R225C|KIF21A_uc010skl.1_Missense_Mutation_p.R225C|KIF21A_uc001rma.1_Missense_Mutation_p.R233C	NM_017641	NP_060111	Q7Z4S6	KI21A_HUMAN	kinesin family member 21A	225	Kinesin-motor.				microtubule-based movement	cytoplasm|microtubule	ATP binding|microtubule motor activity	p.R225H(1)		ovary(4)|pancreas(1)|lung(1)|skin(1)	7		Lung NSC(34;0.179)|all_lung(34;0.213)				GCATGTGAACGAGAGCTCTGA	0.393000													21	69					0	0	1	0	0
C12orf40	283461	broad.mit.edu	37	12	40040240	40040240	+	Silent	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr12:40040240C>G	uc001rmc.2	+	4	479	c.312C>G	c.(310-312)CTC>CTG	p.L104L	C12orf40_uc009zjv.1_RNA	NM_001031748	NP_001026918	Q86WS4	CL040_HUMAN	hypothetical protein LOC283461	104										ovary(6)	6						CTTCTAAACTCTGCCTTGATG	0.343000													33	192					0	0	1	0	0
YAF2	10138	broad.mit.edu	37	12	42554402	42554402	+	Missense_Mutation	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr12:42554402C>T	uc001rmv.2	-	4	600	c.532G>A	c.(532-534)GAA>AAA	p.E178K	YAF2_uc001rmw.2_Missense_Mutation_p.E202K|YAF2_uc010sko.1_Missense_Mutation_p.E169K|YAF2_uc010skp.1_Missense_Mutation_p.E136K	NM_005748	NP_005739	Q8IY57	YAF2_HUMAN	YY1 associated factor 2	178					negative regulation of transcription, DNA-dependent|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	protein binding|transcription coactivator activity|transcription corepressor activity|zinc ion binding				0	all_cancers(12;0.000425)	Lung NSC(34;0.0402)|all_lung(34;0.057)		GBM - Glioblastoma multiforme(48;0.0514)		TAATGAGATTCTCCATTCAAT	0.413000													18	43					0	0	1	0	0
YAF2	10138	broad.mit.edu	37	12	42554468	42554468	+	Missense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr12:42554468C>G	uc001rmv.2	-	4	534	c.466G>C	c.(466-468)GAT>CAT	p.D156H	YAF2_uc001rmw.2_Missense_Mutation_p.D180H|YAF2_uc010sko.1_Missense_Mutation_p.D147H|YAF2_uc010skp.1_Missense_Mutation_p.D114H	NM_005748	NP_005739	Q8IY57	YAF2_HUMAN	YY1 associated factor 2	156					negative regulation of transcription, DNA-dependent|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	protein binding|transcription coactivator activity|transcription corepressor activity|zinc ion binding				0	all_cancers(12;0.000425)	Lung NSC(34;0.0402)|all_lung(34;0.057)		GBM - Glioblastoma multiforme(48;0.0514)		TCTGTGTTATCAGAGCTAGAG	0.418000													13	30					0	0	1	0	0
SLC38A2	54407	broad.mit.edu	37	12	46754939	46754939	+	Missense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr12:46754939C>G	uc001rpg.2	-	16	1916	c.1476G>C	c.(1474-1476)TTG>TTC	p.L492F	SLC38A2_uc010sli.1_Missense_Mutation_p.L330F|SLC38A2_uc001rph.2_Missense_Mutation_p.L392F	NM_018976	NP_061849	Q96QD8	S38A2_HUMAN	solute carrier family 38, member 2	492	Helical; (Potential).				cellular nitrogen compound metabolic process|glutamate secretion|neurotransmitter secretion|sodium ion transport	integral to membrane|plasma membrane	amino acid transmembrane transporter activity|symporter activity			urinary_tract(1)|skin(1)	2	Lung SC(27;0.192)|Renal(347;0.236)		OV - Ovarian serous cystadenocarcinoma(5;0.0048)|Epithelial(2;0.0374)	GBM - Glioblastoma multiforme(48;0.226)		CCAAAACAATCAAGGCCATGC	0.428000													11	41					0	0	1	0	0
MLL2	8085	broad.mit.edu	37	12	49425638	49425638	+	Nonsense_Mutation	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr12:49425638G>A	uc001rta.3	-	39	12850	c.12850C>T	c.(12850-12852)CAG>TAG	p.Q4284*		NM_003482	NP_003473	O14686	MLL2_HUMAN	myeloid/lymphoid or mixed-lineage leukemia 2	4284	Pro-rich.				chromatin silencing|histone H3-K4 methylation|oocyte growth|positive regulation of cell proliferation|positive regulation of estrogen receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter|response to estrogen stimulus|transcription, DNA-dependent	histone methyltransferase complex	histone-lysine N-methyltransferase activity|protein binding|transcription regulatory region DNA binding|zinc ion binding			kidney(16)|central_nervous_system(12)|lung(4)|skin(4)|ovary(3)|pancreas(2)	41						GGTGGGCCCTGAGGTCGAGGC	0.677000			N|F|Mis		medulloblastoma|renal					HNSCC(34;0.089)			7	33					0	0	1	0	0
TUBA1B	10376	broad.mit.edu	37	12	49523086	49523086	+	Missense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr12:49523086C>G	uc001rtm.2	-	3	535	c.314G>C	c.(313-315)CGA>CCA	p.R105P	TUBA1B_uc001rto.2_Intron|TUBA1B_uc001rtk.2_Missense_Mutation_p.R70P|TUBA1B_uc001rtl.2_Missense_Mutation_p.R70P|TUBA1B_uc001rtn.2_Intron	NM_006082	NP_006073	P68363	TBA1B_HUMAN	tubulin, alpha, ubiquitous	105					'de novo' posttranslational protein folding|microtubule-based movement|protein polymerization	cytoplasm|microtubule	GTP binding|GTPase activity|protein binding				0						GTAGTGCCCTCGGGCATAGTT	0.507000													5	186					0	0	1	0	0
SLC11A2	4891	broad.mit.edu	37	12	51394105	51394105	+	Missense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr12:51394105G>C	uc001rxe.3	-	6	624	c.527C>G	c.(526-528)TCT>TGT	p.S176C	SLC11A2_uc001rxd.3_Missense_Mutation_p.S25C|SLC11A2_uc001rxc.3_Missense_Mutation_p.S176C|SLC11A2_uc001rxf.2_RNA|SLC11A2_uc010smx.1_Missense_Mutation_p.S172C|SLC11A2_uc001rxh.1_Missense_Mutation_p.S176C|SLC11A2_uc001rxj.1_Missense_Mutation_p.S176C|SLC11A2_uc001rxi.2_Missense_Mutation_p.S176C|SLC11A2_uc001rxk.1_Missense_Mutation_p.S205C|SLC11A2_uc010smy.1_Missense_Mutation_p.S139C	NM_000617	NP_000608	P49281	NRAM2_HUMAN	solute carrier family 11 (proton-coupled	176	Extracellular (Potential).				activation of caspase activity|cellular iron ion homeostasis|cellular response to oxidative stress|detection of oxygen|ferrous iron import|multicellular organismal iron ion homeostasis|response to hypoxia|response to iron ion	apical plasma membrane|basal part of cell|cell surface|cytoplasmic vesicle|early endosome|late endosome|late endosome membrane|lysosomal membrane|lysosome|nucleus|paraferritin complex|perinuclear region of cytoplasm|perinuclear region of cytoplasm|plasma membrane|recycling endosome|trans-Golgi network	cadmium ion transmembrane transporter activity|cadmium ion transmembrane transporter activity|cobalt ion transmembrane transporter activity|copper ion transmembrane transporter activity|ferrous iron transmembrane transporter activity|ferrous iron transmembrane transporter activity|lead ion transmembrane transporter activity|lead ion transmembrane transporter activity|manganese ion transmembrane transporter activity|manganese ion transmembrane transporter activity|nickel ion transmembrane transporter activity|protein binding|solute:hydrogen symporter activity|vanadium ion transmembrane transporter activity|zinc ion transmembrane transporter activity			large_intestine(1)	1						CCTTCCTACAGACAGAAGATT	0.428000													22	61					0	0	1	0	0
CSRNP2	81566	broad.mit.edu	37	12	51458156	51458156	+	Silent	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr12:51458156C>T	uc001rxu.1	-	5	1303	c.1005G>A	c.(1003-1005)CGG>CGA	p.R335R		NM_030809	NP_110436	Q9H175	CSRN2_HUMAN	TGF-beta induced apoptosis protein 12	335					apoptosis|positive regulation of transcription from RNA polymerase II promoter	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity				0						CTGCCTTGAGCCGCTCCAGTT	0.587000													4	181					0	0	1	0	0
KRT86	3892	broad.mit.edu	37	12	52702236	52702236	+	Missense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr12:52702236C>G	uc010snq.1	+	10	1461	c.1328C>G	c.(1327-1329)TCC>TGC	p.S443C	KRT86_uc009zmg.2_Missense_Mutation_p.S443C|KRT81_uc001sac.2_5'Flank|KRT86_uc001sad.2_Missense_Mutation_p.S443C	NM_002284	NP_002275	O43790	KRT86_HUMAN	keratin 86	443	Tail.				cytoskeleton organization	keratin filament	structural molecule activity			ovary(1)	1				BRCA - Breast invasive adenocarcinoma(357;0.189)		CTCTGCGCCTCCACTACTGCC	0.677000													6	26					0	0	1	0	0
KRT71	112802	broad.mit.edu	37	12	52940165	52940165	+	Silent	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr12:52940165C>T	uc001sao.2	-	7	1300	c.1230G>A	c.(1228-1230)CGG>CGA	p.R410R		NM_033448	NP_258259	Q3SY84	K2C71_HUMAN	keratin 71	410	Coil 2.|Rod.						structural molecule activity			ovary(1)|skin(1)	2				BRCA - Breast invasive adenocarcinoma(357;0.194)		CGCGCAGCATCCGCGCCAGCT	0.657000													21	76					0	0	1	0	0
KRT1	3848	broad.mit.edu	37	12	53072003	53072003	+	Missense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr12:53072003C>G	uc001sau.1	-	3	870	c.811G>C	c.(811-813)GAG>CAG	p.E271Q	KRT1_uc001sav.1_Missense_Mutation_p.E271Q	NM_006121	NP_006112	P04264	K2C1_HUMAN	keratin 1	271	Coil 1B.|Rod.				complement activation, lectin pathway|epidermis development|fibrinolysis|regulation of angiogenesis|response to oxidative stress	plasma membrane	protein binding|receptor activity|structural constituent of cytoskeleton|sugar binding			ovary(1)|skin(1)	2						ATTTCATCCTCATACCTGCAG	0.403000													14	54					0	0	1	0	0
C12orf10	60314	broad.mit.edu	37	12	53700810	53700810	+	Silent	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr12:53700810G>C	uc001scp.3	+	7	1060	c.1008G>C	c.(1006-1008)GGG>GGC	p.G336G	C12orf10_uc009zmx.2_Silent_p.G285G|C12orf10_uc001scq.3_Silent_p.G221G	NM_021640	NP_067653	Q86UA3	Q86UA3_HUMAN	MYG1 protein precursor	336										ovary(2)	2						AGGTCAGTGGGATCCCTGGCT	0.662000													7	256					0	0	1	0	0
NCKAP1L	3071	broad.mit.edu	37	12	54925340	54925340	+	Missense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr12:54925340G>C	uc001sgc.3	+	24	2749	c.2670G>C	c.(2668-2670)TTG>TTC	p.L890F	NCKAP1L_uc010sox.1_Missense_Mutation_p.L432F|NCKAP1L_uc010soy.1_Missense_Mutation_p.L840F	NM_005337	NP_005328	P55160	NCKPL_HUMAN	NCK-associated protein 1-like	890					actin polymerization-dependent cell motility|B cell homeostasis|B cell receptor signaling pathway|cortical actin cytoskeleton organization|erythrocyte development|maintenance of cell polarity|myeloid cell homeostasis|negative regulation of apoptosis|negative regulation of interleukin-17 production|negative regulation of interleukin-6 production|negative regulation of myosin-light-chain-phosphatase activity|neutrophil chemotaxis|positive regulation of actin filament polymerization|positive regulation of B cell differentiation|positive regulation of B cell proliferation|positive regulation of CD4-positive, alpha-beta T cell differentiation|positive regulation of CD8-positive, alpha-beta T cell differentiation|positive regulation of cell adhesion mediated by integrin|positive regulation of erythrocyte differentiation|positive regulation of gamma-delta T cell differentiation|positive regulation of neutrophil chemotaxis|positive regulation of phagocytosis, engulfment|positive regulation of T cell proliferation|protein complex assembly|response to drug|T cell homeostasis	cytosol|integral to plasma membrane|membrane fraction|SCAR complex	protein complex binding|protein kinase activator activity|Rac GTPase activator activity			ovary(3)|central_nervous_system(1)	4						AGCCGGACTTGATGGCTTCCC	0.483000													28	87					0	0	1	0	0
OR6C65	403282	broad.mit.edu	37	12	55795184	55795184	+	Missense_Mutation	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr12:55795184G>A	uc010spl.1	+	1	872	c.872G>A	c.(871-873)AGA>AAA	p.R291K		NM_001005518	NP_001005518	A6NJZ3	O6C65_HUMAN	olfactory receptor, family 6, subfamily C,	291	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						TATACCTTAAGAAACCAGCAG	0.358000													21	59					0	0	1	0	0
TIMELESS	8914	broad.mit.edu	37	12	56815235	56815235	+	Nonsense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr12:56815235G>C	uc001slf.2	-	23	2936	c.2768C>G	c.(2767-2769)TCA>TGA	p.S923*		NM_003920	NP_003911	Q9UNS1	TIM_HUMAN	timeless homolog	923					cell division|circadian rhythm|detection of abiotic stimulus|mitosis|morphogenesis of an epithelium|negative regulation of transcription, DNA-dependent|regulation of S phase|response to DNA damage stimulus|transcription, DNA-dependent	nuclear chromatin				ovary(5)|breast(2)|pancreas(1)	8						TCGGGCCCGTGAGCGTTTGGC	0.478000													32	184					0	0	1	0	0
TIMELESS	8914	broad.mit.edu	37	12	56822125	56822125	+	Missense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr12:56822125C>G	uc001slf.2	-	13	1641	c.1473G>C	c.(1471-1473)GAG>GAC	p.E491D	TIMELESS_uc001slg.2_Missense_Mutation_p.E490D	NM_003920	NP_003911	Q9UNS1	TIM_HUMAN	timeless homolog	491					cell division|circadian rhythm|detection of abiotic stimulus|mitosis|morphogenesis of an epithelium|negative regulation of transcription, DNA-dependent|regulation of S phase|response to DNA damage stimulus|transcription, DNA-dependent	nuclear chromatin				ovary(5)|breast(2)|pancreas(1)	8						GCTGGCATCTCTCATCAAACT	0.502000													15	75					0	0	1	0	0
TIMELESS	8914	broad.mit.edu	37	12	56822160	56822160	+	Missense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr12:56822160C>G	uc001slf.2	-	13	1606	c.1438G>C	c.(1438-1440)GAA>CAA	p.E480Q	TIMELESS_uc001slg.2_Missense_Mutation_p.E479Q	NM_003920	NP_003911	Q9UNS1	TIM_HUMAN	timeless homolog	480					cell division|circadian rhythm|detection of abiotic stimulus|mitosis|morphogenesis of an epithelium|negative regulation of transcription, DNA-dependent|regulation of S phase|response to DNA damage stimulus|transcription, DNA-dependent	nuclear chromatin				ovary(5)|breast(2)|pancreas(1)	8						AGGAATAGTTCTCGGTACTCC	0.463000													12	48					0	0	1	0	0
BAZ2A	11176	broad.mit.edu	37	12	56994157	56994157	+	Nonsense_Mutation	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr12:56994157G>A	uc001slq.1	-	24	4920	c.4726C>T	c.(4726-4728)CAG>TAG	p.Q1576*	BAZ2A_uc001slp.1_Nonsense_Mutation_p.Q1574*|BAZ2A_uc001slo.1_Nonsense_Mutation_p.Q382*|BAZ2A_uc009zov.1_Nonsense_Mutation_p.Q542*|BAZ2A_uc009zow.1_Nonsense_Mutation_p.Q1544*	NM_013449	NP_038477	Q9UIF9	BAZ2A_HUMAN	bromodomain adjacent to zinc finger domain, 2A	1576					chromatin silencing at rDNA|DNA methylation|transcription, DNA-dependent	chromatin silencing complex|nucleolus|rDNA heterochromatin	DNA binding|histone acetyl-lysine binding|ligand-dependent nuclear receptor binding|RNA binding|zinc ion binding				0						GTTTTACGCTGAGGTGCCAGT	0.617000													19	72					0	0	1	0	0
BAZ2A	11176	broad.mit.edu	37	12	56995142	56995142	+	Missense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr12:56995142G>C	uc001slq.1	-	21	4316	c.4122C>G	c.(4120-4122)TTC>TTG	p.F1374L	BAZ2A_uc001slp.1_Missense_Mutation_p.F1372L|BAZ2A_uc001slo.1_Missense_Mutation_p.F202L|BAZ2A_uc009zov.1_Missense_Mutation_p.F344L|BAZ2A_uc009zow.1_Missense_Mutation_p.F1342L	NM_013449	NP_038477	Q9UIF9	BAZ2A_HUMAN	bromodomain adjacent to zinc finger domain, 2A	1374	Pro-rich.				chromatin silencing at rDNA|DNA methylation|transcription, DNA-dependent	chromatin silencing complex|nucleolus|rDNA heterochromatin	DNA binding|histone acetyl-lysine binding|ligand-dependent nuclear receptor binding|RNA binding|zinc ion binding				0						GCGTGGAAGAGAACTGCACTG	0.517000													10	29					0	0	1	0	0
BAZ2A	11176	broad.mit.edu	37	12	56995491	56995491	+	Nonsense_Mutation	SNP	C	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr12:56995491C>A	uc001slq.1	-	20	4110	c.3916G>T	c.(3916-3918)GAG>TAG	p.E1306*	BAZ2A_uc001slp.1_Nonsense_Mutation_p.E1304*|BAZ2A_uc001slo.1_Nonsense_Mutation_p.E134*|BAZ2A_uc009zov.1_Nonsense_Mutation_p.E276*|BAZ2A_uc009zow.1_Nonsense_Mutation_p.E1274*	NM_013449	NP_038477	Q9UIF9	BAZ2A_HUMAN	bromodomain adjacent to zinc finger domain, 2A	1306	Pro-rich.				chromatin silencing at rDNA|DNA methylation|transcription, DNA-dependent	chromatin silencing complex|nucleolus|rDNA heterochromatin	DNA binding|histone acetyl-lysine binding|ligand-dependent nuclear receptor binding|RNA binding|zinc ion binding				0						TCTGGCTCCTCCGGGGGTTGT	0.587000													54	237					4.96213e-28	5.20094e-28	1	1	0
NACA	4666	broad.mit.edu	37	12	57107411	57107411	+	Silent	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr12:57107411C>T	uc001slz.2	-	5	640	c.291G>A	c.(289-291)CGG>CGA	p.R97R	NACA_uc001sly.2_Silent_p.R97R|NACA_uc009zoy.1_Silent_p.R1960R|NACA_uc001smc.2_Silent_p.R97R|NACA_uc001sma.2_Silent_p.R807R|NACA_uc001smb.2_Silent_p.R97R|NACA_uc010squ.1_Intron	NM_001113201	NP_001106672	Q13765	NACA_HUMAN	nascent polypeptide-associated complex alpha	97	NAC-A/B.				interspecies interaction between organisms|protein transport|transcription, DNA-dependent|translation	nascent polypeptide-associated complex|nucleus	DNA binding			ovary(1)	1						TCTTAGATTTCCGGATAGTGA	0.408000			T	BCL6	NHL								57	196					0	0	1	0	0
ZBTB39	9880	broad.mit.edu	37	12	57397132	57397132	+	Missense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr12:57397132C>G	uc001sml.1	-	2	1656	c.1570G>C	c.(1570-1572)GAG>CAG	p.E524Q	RDH16_uc010sqx.1_5'Flank	NM_014830	NP_055645	O15060	ZBT39_HUMAN	zinc finger and BTB domain containing 39	524	C2H2-type 4.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			breast(1)	1						ATGTGCTTCTCTAGAAGATGC	0.552000													10	34					0	0	1	0	0
MYO1A	4640	broad.mit.edu	37	12	57436939	57436939	+	Missense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr12:57436939G>C	uc001smw.3	-	12	1258	c.1015C>G	c.(1015-1017)CAG>GAG	p.Q339E	MYO1A_uc010sqz.1_Missense_Mutation_p.Q177E|MYO1A_uc009zpd.2_Missense_Mutation_p.Q339E	NM_005379	NP_005370	Q9UBC5	MYO1A_HUMAN	myosin IA	339	Myosin head-like.				sensory perception of sound|vesicle localization	brush border|cortical actin cytoskeleton|filamentous actin|lateral plasma membrane|microvillus|myosin complex	actin binding|ATP binding|calmodulin binding|motor activity			skin(4)|ovary(2)|urinary_tract(1)	7						CGAGCATACTGAGCCTGTGGG	0.542000													3	82					0	0	1	0	0
MBD6	114785	broad.mit.edu	37	12	57921422	57921422	+	Missense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr12:57921422C>G	uc001soj.1	+	8	2439	c.2215C>G	c.(2215-2217)CTG>GTG	p.L739V	MBD6_uc001sok.1_Missense_Mutation_p.L606V|MBD6_uc001sol.1_RNA	NM_052897	NP_443129	Q96DN6	MBD6_HUMAN	methyl-CpG binding domain protein 6	739	Pro-rich.					chromosome|nucleus	chromatin binding|DNA binding			central_nervous_system(3)|ovary(1)	4						CCTTAGCCCTCTGCTGGGTGC	0.572000													5	263					0	0	1	0	0
OS9	10956	broad.mit.edu	37	12	58112097	58112097	+	Missense_Mutation	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr12:58112097G>A	uc001spj.2	+	11	1362	c.1303G>A	c.(1303-1305)GAA>AAA	p.E435K	OS9_uc010srx.1_Missense_Mutation_p.E229K|OS9_uc001spk.2_Missense_Mutation_p.E435K|OS9_uc001spl.2_Missense_Mutation_p.E435K|OS9_uc001spm.2_Missense_Mutation_p.E435K|OS9_uc001spn.2_Missense_Mutation_p.E436K|OS9_uc010sry.1_Missense_Mutation_p.E403K|OS9_uc010srz.1_Missense_Mutation_p.E376K	NM_006812	NP_006803	Q13438	OS9_HUMAN	osteosarcoma amplified 9, endoplasmic reticulum	435					ER-associated protein catabolic process|protein retention in ER lumen|protein ubiquitination involved in ubiquitin-dependent protein catabolic process|response to endoplasmic reticulum stress	endoplasmic reticulum lumen|Hrd1p ubiquitin ligase complex	glycoprotein binding|protein binding|sugar binding			ovary(1)	1	all_neural(12;0.00548)|Glioma(12;0.0126)|Melanoma(17;0.122)		BRCA - Breast invasive adenocarcinoma(9;0.109)			GTTACTGGGAGAATTTGAGAA	0.398000													16	72					0	0	1	0	0
AGAP2	116986	broad.mit.edu	37	12	58121321	58121321	+	Missense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr12:58121321C>G	uc001spq.2	-	17	2902	c.2902G>C	c.(2902-2904)GAG>CAG	p.E968Q	AGAP2_uc001spo.1_5'Flank|AGAP2_uc001spp.2_Missense_Mutation_p.E967Q|AGAP2_uc001spr.2_Missense_Mutation_p.E612Q|LOC100130776_uc001sps.3_Silent_p.L182L	NM_001122772	NP_001116244	Q99490	AGAP2_HUMAN	centaurin, gamma 1 isoform PIKE-L	968	C4-type.|Arf-GAP.				axon guidance|negative regulation of neuron apoptosis|negative regulation of protein catabolic process|protein transport|regulation of ARF GTPase activity|small GTPase mediated signal transduction	mitochondrion|nucleolus	ARF GTPase activator activity|GTP binding|zinc ion binding			central_nervous_system(3)|breast(2)	5						CCAGAACACTCGATGCAGATG	0.677000													9	16					0	0	1	0	0
MON2	23041	broad.mit.edu	37	12	62929322	62929322	+	Missense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr12:62929322C>G	uc001sre.2	+	14	2124	c.1733C>G	c.(1732-1734)ACT>AGT	p.T578S	MON2_uc009zqj.2_Missense_Mutation_p.T578S|MON2_uc010ssl.1_Missense_Mutation_p.T506S|MON2_uc010ssm.1_Missense_Mutation_p.T578S|MON2_uc010ssn.1_Missense_Mutation_p.T578S|MON2_uc001srf.2_Missense_Mutation_p.T341S	NM_015026	NP_055841	Q7Z3U7	MON2_HUMAN	MON2 homolog	578					Golgi to endosome transport|protein transport	cytoplasm	ARF guanyl-nucleotide exchange factor activity|binding			central_nervous_system(2)	2			BRCA - Breast invasive adenocarcinoma(9;0.218)	GBM - Glioblastoma multiforme(28;0.128)		GAAGCTGCCACTGAGAATATT	0.338000													6	80					0	0	1	0	0
C12orf61	283416	broad.mit.edu	37	12	62996860	62996860	+	Missense_Mutation	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr12:62996860C>T	uc001sri.1	-	1	355	c.259G>A	c.(259-261)GAG>AAG	p.E87K	MIRLET7I_hsa-let-7i|MI0000434_5'Flank|uc001srj.1_5'Flank	NM_175895	NP_787091	Q8N7H1	CL061_HUMAN	hypothetical protein LOC283416	87											0			BRCA - Breast invasive adenocarcinoma(9;0.0399)	GBM - Glioblastoma multiforme(28;0.134)		GCGGCAGCCTCTGCGGGATGC	0.736000													9	6					0	0	1	0	0
RASSF3	283349	broad.mit.edu	37	12	65082182	65082182	+	Missense_Mutation	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr12:65082182G>A	uc001ssd.2	+	3	526	c.406G>A	c.(406-408)GAG>AAG	p.E136K	RASSF3_uc009zqn.2_Intron|RASSF3_uc001sse.2_Missense_Mutation_p.E66K	NM_178169	NP_835463	Q86WH2	RASF3_HUMAN	Ras association (RalGDS/AF-6) domain family	136	Ras-associating.				signal transduction	cytoplasm|microtubule	identical protein binding				0			Lung(2;0.00133)|LUAD - Lung adenocarcinoma(6;0.0665)|LUSC - Lung squamous cell carcinoma(43;0.132)	GBM - Glioblastoma multiforme(28;0.0611)		TCTCGTGACTGAGAGCCCTGC	0.478000													34	86					0	0	1	0	0
WIF1	11197	broad.mit.edu	37	12	65456282	65456282	+	Missense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr12:65456282C>G	uc001ssk.2	-	7	950	c.805G>C	c.(805-807)GAG>CAG	p.E269Q		NM_007191	NP_009122	Q9Y5W5	WIF1_HUMAN	WNT inhibitory factor 1 precursor	269	EGF-like 3.				multicellular organismal development|Wnt receptor signaling pathway	extracellular region	protein tyrosine kinase activity			ovary(2)|lung(1)|skin(1)	4			LUAD - Lung adenocarcinoma(6;0.0234)|LUSC - Lung squamous cell carcinoma(43;0.0975)	GBM - Glioblastoma multiforme(28;0.0231)		TGCTCTCCCTCTAGTCCTGGA	0.338000			T	HMGA2	pleomorphic salivary gland adenoma								11	32					0	0	1	0	0
GRIP1	23426	broad.mit.edu	37	12	66773175	66773175	+	Missense_Mutation	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr12:66773175C>T	uc001stk.2	-	19	2591	c.2350G>A	c.(2350-2352)GAC>AAC	p.D784N	GRIP1_uc010sta.1_Missense_Mutation_p.D728N|GRIP1_uc001stj.2_Missense_Mutation_p.D566N|GRIP1_uc001stl.1_Missense_Mutation_p.D676N|GRIP1_uc001stm.2_Missense_Mutation_p.D784N	NM_021150	NP_066973	Q9Y3R0	GRIP1_HUMAN	glutamate receptor interacting protein 1	836					androgen receptor signaling pathway|intracellular signal transduction|positive regulation of transcription, DNA-dependent|synaptic transmission	cell junction|cytoplasmic membrane-bounded vesicle|cytosol|endoplasmic reticulum|postsynaptic membrane	androgen receptor binding|beta-catenin binding|protein C-terminus binding|receptor signaling complex scaffold activity|transcription coactivator activity			ovary(2)	2			GBM - Glioblastoma multiforme(2;0.00069)	GBM - Glioblastoma multiforme(28;0.0933)		CTCCTCCAGTCATAGGTGTTG	0.463000													74	231					0	0	1	0	0
SLC35E3	55508	broad.mit.edu	37	12	69145963	69145963	+	Missense_Mutation	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr12:69145963C>T	uc001suh.2	+	3	887	c.665C>T	c.(664-666)TCT>TTT	p.S222F		NM_018656	NP_061126	Q7Z769	S35E3_HUMAN	solute carrier family 35, member E2	222						integral to membrane					0	Breast(13;2.31e-06)|Renal(347;0.0684)		Lung(24;0.000131)|LUAD - Lung adenocarcinoma(15;0.00107)|STAD - Stomach adenocarcinoma(21;0.00372)			TGGTCAGTTTCTGCTTTGGTA	0.313000													60	242					0	0	1	0	0
CCT2	10576	broad.mit.edu	37	12	69987309	69987309	+	Missense_Mutation	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr12:69987309C>T	uc001svb.1	+	10	992	c.898C>T	c.(898-900)CCT>TCT	p.P300S	CCT2_uc009zrm.1_RNA|CCT2_uc009zrn.1_Missense_Mutation_p.P300S|CCT2_uc010stl.1_Missense_Mutation_p.P253S	NM_006431	NP_006422	P78371	TCPB_HUMAN	chaperonin containing TCP1, subunit 2	300					'de novo' posttranslational protein folding	nucleus	ATP binding|unfolded protein binding			ovary(1)|central_nervous_system(1)|skin(1)	3	all_cancers(2;7.7e-106)|Breast(13;2.15e-06)|Esophageal squamous(21;0.187)		Epithelial(6;2.72e-18)|GBM - Glioblastoma multiforme(2;2.58e-10)|Lung(24;0.000185)|OV - Ovarian serous cystadenocarcinoma(12;0.00126)|STAD - Stomach adenocarcinoma(21;0.00501)|Kidney(9;0.143)|LUSC - Lung squamous cell carcinoma(43;0.24)			TTATAATTATCCTGAACAGCT	0.264000													16	79					0	0	1	0	0
BEST3	144453	broad.mit.edu	37	12	70049412	70049412	+	Missense_Mutation	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr12:70049412C>T	uc001svg.2	-	10	1509	c.1282G>A	c.(1282-1284)GAC>AAC	p.D428N	BEST3_uc001svd.1_Intron|BEST3_uc001sve.1_Intron|BEST3_uc001svf.2_Missense_Mutation_p.D215N|BEST3_uc010stm.1_Missense_Mutation_p.D322N	NM_032735	NP_116124	Q8N1M1	BEST3_HUMAN	vitelliform macular dystrophy 2-like 3 isoform	428	Cytoplasmic (Potential).					chloride channel complex|plasma membrane	chloride channel activity				0	Breast(13;2.31e-06)|Esophageal squamous(21;0.187)		Lung(24;0.000278)|OV - Ovarian serous cystadenocarcinoma(12;0.0019)|STAD - Stomach adenocarcinoma(21;0.00694)			GGGCTGAGGTCATCTCGGGGT	0.592000													8	162					0	0	1	0	0
BEST3	144453	broad.mit.edu	37	12	70049462	70049462	+	Missense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr12:70049462C>G	uc001svg.2	-	10	1459	c.1232G>C	c.(1231-1233)AGA>ACA	p.R411T	BEST3_uc001svd.1_Intron|BEST3_uc001sve.1_Intron|BEST3_uc001svf.2_Missense_Mutation_p.R198T|BEST3_uc010stm.1_Missense_Mutation_p.R305T	NM_032735	NP_116124	Q8N1M1	BEST3_HUMAN	vitelliform macular dystrophy 2-like 3 isoform	411	Cytoplasmic (Potential).					chloride channel complex|plasma membrane	chloride channel activity				0	Breast(13;2.31e-06)|Esophageal squamous(21;0.187)		Lung(24;0.000278)|OV - Ovarian serous cystadenocarcinoma(12;0.0019)|STAD - Stomach adenocarcinoma(21;0.00694)			CCTGTAGCTTCTTCTTCTGGG	0.562000													7	198					0	0	1	0	0
TSPAN8	7103	broad.mit.edu	37	12	71537942	71537942	+	Missense_Mutation	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr12:71537942C>T	uc009zrt.1	-	2	274	c.112G>A	c.(112-114)GAC>AAC	p.D38N	TSPAN8_uc001swk.1_Missense_Mutation_p.D38N|TSPAN8_uc001swj.1_Missense_Mutation_p.D38N	NM_004616	NP_004607	P19075	TSN8_HUMAN	transmembrane 4 superfamily member 3	38	Extracellular (Potential).				protein glycosylation	integral to membrane|lysosome	signal transducer activity			skin(2)|lung(1)|central_nervous_system(1)	4			LUSC - Lung squamous cell carcinoma(43;0.24)|OV - Ovarian serous cystadenocarcinoma(12;0.244)			GCTTGAGAGTCATTGCTTACT	0.303000													9	40					0	0	1	0	0
ZFC3H1	196441	broad.mit.edu	37	12	72018069	72018069	+	Missense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr12:72018069G>C	uc001swo.2	-	23	4680	c.4321C>G	c.(4321-4323)CTA>GTA	p.L1441V		NM_144982	NP_659419	O60293	ZC3H1_HUMAN	proline/serine-rich coiled-coil 2	1441	HAT 2.				RNA processing	intracellular	metal ion binding			ovary(2)|breast(1)|central_nervous_system(1)|skin(1)	5						TCTAGGTGTAGAAACTGCCCA	0.363000													4	203					0	0	1	0	0
ZFC3H1	196441	broad.mit.edu	37	12	72056802	72056802	+	Missense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr12:72056802G>C	uc001swo.2	-	1	948	c.589C>G	c.(589-591)CGG>GGG	p.R197G	ZFC3H1_uc010sts.1_Missense_Mutation_p.R197G|ZFC3H1_uc001swp.2_Missense_Mutation_p.R197G|THAP2_uc001swq.2_5'Flank	NM_144982	NP_659419	O60293	ZC3H1_HUMAN	proline/serine-rich coiled-coil 2	197					RNA processing	intracellular	metal ion binding			ovary(2)|breast(1)|central_nervous_system(1)|skin(1)	5						CAGCTCTTCCGAGGTGGAGAG	0.582000													78	285					0	0	1	0	0
NAV3	89795	broad.mit.edu	37	12	78511882	78511882	+	Missense_Mutation	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr12:78511882G>A	uc001syp.2	+	14	3018	c.2845G>A	c.(2845-2847)GAA>AAA	p.E949K	NAV3_uc001syo.2_Missense_Mutation_p.E949K|NAV3_uc010sub.1_Missense_Mutation_p.E449K|NAV3_uc009zsf.2_5'UTR	NM_014903	NP_055718	Q8IVL0	NAV3_HUMAN	neuron navigator 3	949						nuclear outer membrane	ATP binding|nucleoside-triphosphatase activity			large_intestine(6)|ovary(5)|lung(2)|breast(1)|skin(1)|kidney(1)|pancreas(1)	17						AAAACCAGAAGAAGATTTTGA	0.488000										HNSCC(70;0.22)			6	199					0	0	1	0	0
PPP1R12A	4659	broad.mit.edu	37	12	80192284	80192284	+	Missense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr12:80192284C>G	uc001syz.2	-	15	2348	c.2081G>C	c.(2080-2082)AGA>ACA	p.R694T	PPP1R12A_uc010suc.1_Missense_Mutation_p.R607T|PPP1R12A_uc001sza.2_Missense_Mutation_p.R638T|PPP1R12A_uc010sud.1_Missense_Mutation_p.R694T|PPP1R12A_uc001szb.2_Missense_Mutation_p.R694T|PPP1R12A_uc001szc.2_Missense_Mutation_p.R635T	NM_002480	NP_002471	O14974	MYPT1_HUMAN	protein phosphatase 1, regulatory (inhibitor)	694	Interaction with ROCK2.					contractile fiber	protein binding|signal transducer activity			ovary(2)|breast(2)|large_intestine(1)|central_nervous_system(1)|skin(1)	7						CTGTGTTGATCTTCTAGATTG	0.308000													4	8					0	0	1	0	0
LRRIQ1	84125	broad.mit.edu	37	12	85459081	85459081	+	Silent	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr12:85459081C>G	uc001tac.2	+	9	2544	c.2433C>G	c.(2431-2433)CTC>CTG	p.L811L	LRRIQ1_uc001tab.1_Silent_p.L811L	NM_001079910	NP_001073379	Q96JM4	LRIQ1_HUMAN	leucine-rich repeats and IQ motif containing 1	811										ovary(4)|central_nervous_system(1)|skin(1)	6				GBM - Glioblastoma multiforme(134;0.212)		GCTGTGTTCTCTCCACACTGG	0.373000													3	111					0	0	1	0	0
ATP2B1	490	broad.mit.edu	37	12	90010755	90010755	+	Missense_Mutation	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr12:90010755C>T	uc001tbh.2	-	11	2072	c.1891G>A	c.(1891-1893)GAT>AAT	p.D631N	ATP2B1_uc001tbg.2_Missense_Mutation_p.D631N|ATP2B1_uc001tbf.2_Missense_Mutation_p.D301N	NM_001682	NP_001673	P20020	AT2B1_HUMAN	plasma membrane calcium ATPase 1 isoform 1b	631	Cytoplasmic (Potential).				ATP biosynthetic process|platelet activation	integral to plasma membrane	ATP binding|calcium-transporting ATPase activity|calmodulin binding|metal ion binding|protein binding			ovary(2)|central_nervous_system(1)	3						TTTACAATATCATCACGGTCC	0.388000													9	182					0	0	1	0	0
DCN	1634	broad.mit.edu	37	12	91539883	91539883	+	Silent	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr12:91539883G>A	uc001tbs.2	-	7	1126	c.1032C>T	c.(1030-1032)TTC>TTT	p.F344F	DCN_uc001tbo.2_Silent_p.F235F|DCN_uc001tbp.2_Silent_p.F197F|DCN_uc001tbq.2_Silent_p.F157F|DCN_uc001tbr.2_3'UTR|DCN_uc001tbt.2_Silent_p.F344F|DCN_uc001tbu.2_Silent_p.F344F	NM_133503	NP_598010	P07585	PGS2_HUMAN	decorin isoform a preproprotein	344	LRR 12.				organ morphogenesis	extracellular space				central_nervous_system(2)|ovary(1)|lung(1)	4						AGACACATCTGAAGGTGGATG	0.448000													31	131					0	0	1	0	0
SOCS2	8835	broad.mit.edu	37	12	93968612	93968612	+	Missense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr12:93968612C>G	uc001tcw.1	+	3	844	c.254C>G	c.(253-255)TCT>TGT	p.S85C	SOCS2_uc001tcx.1_Missense_Mutation_p.S85C|SOCS2_uc009zsu.2_3'UTR|SOCS2_uc001tcy.1_Missense_Mutation_p.S85C|SOCS2_uc001tcz.2_3'UTR	NM_003877	NP_003868	O14508	SOCS2_HUMAN	suppressor of cytokine signaling-2	85	SH2.				anti-apoptosis|growth hormone receptor signaling pathway|JAK-STAT cascade|negative regulation of signal transduction|regulation of cell growth|response to estradiol stimulus	cytoplasm	growth hormone receptor binding|insulin-like growth factor receptor binding|JAK pathway signal transduction adaptor activity|prolactin receptor binding|SH3/SH2 adaptor activity			lung(1)	1						CTAACAATATCTGTTAAAACA	0.363000													12	78					0	0	1	0	0
PLXNC1	10154	broad.mit.edu	37	12	94543449	94543449	+	Missense_Mutation	SNP	C	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr12:94543449C>A	uc001tdc.2	+	1	951	c.702C>A	c.(700-702)TTC>TTA	p.F234L		NM_005761	NP_005752	O60486	PLXC1_HUMAN	plexin C1 precursor	234	Extracellular (Potential).|Sema.				axon guidance|cell adhesion	integral to membrane|intracellular|plasma membrane	receptor activity|receptor binding			ovary(2)|central_nervous_system(1)	3						GCCTGCACTTCGTGGACGCCT	0.682000													4	10					0.00024832	0.000252469	1	1	0
FGD6	55785	broad.mit.edu	37	12	95535261	95535261	+	Missense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr12:95535261C>G	uc001tdp.3	-	6	2964	c.2740G>C	c.(2740-2742)GAG>CAG	p.E914Q	FGD6_uc009zsx.2_Missense_Mutation_p.E47Q	NM_018351	NP_060821	Q6ZV73	FGD6_HUMAN	FYVE, RhoGEF and PH domain containing 6	914	DH.				actin cytoskeleton organization|filopodium assembly|regulation of Cdc42 GTPase activity|regulation of cell shape	cytoskeleton|Golgi apparatus|lamellipodium|ruffle	metal ion binding|Rho guanyl-nucleotide exchange factor activity|small GTPase binding			ovary(2)|breast(1)	3						ATCCGGTCCTCAATCACTGGT	0.453000													12	56					0	0	1	0	0
AMDHD1	144193	broad.mit.edu	37	12	96354389	96354389	+	Missense_Mutation	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr12:96354389G>A	uc001tel.1	+	5	907	c.801G>A	c.(799-801)ATG>ATA	p.M267I	AMDHD1_uc009zth.1_Missense_Mutation_p.M158I	NM_152435	NP_689648	Q96NU7	HUTI_HUMAN	amidohydrolase domain containing 1	267					histidine catabolic process to glutamate and formamide	cytosol	imidazolonepropionase activity|metal ion binding			central_nervous_system(1)	1						TCCACCCGATGAAGGCTGCTG	0.418000													33	92					0	0	1	0	0
C12orf63	374467	broad.mit.edu	37	12	97150283	97150283	+	Nonsense_Mutation	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr12:97150283C>T	uc001tet.1	+	24	3241	c.3163C>T	c.(3163-3165)CAA>TAA	p.Q1055*		NM_198520	NP_940922	Q6ZTY8	CL063_HUMAN	hypothetical protein LOC374467	1055										skin(6)|ovary(1)	7						TCCAAGTTTTCAACTTGAGAG	0.328000													10	37					0	0	1	0	0
SPIC	121599	broad.mit.edu	37	12	101880256	101880256	+	Missense_Mutation	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr12:101880256G>A	uc001tid.2	+	6	613	c.454G>A	c.(454-456)GAG>AAG	p.E152K	SPIC_uc009zua.2_Missense_Mutation_p.E27K|SPIC_uc010svp.1_Missense_Mutation_p.E151K	NM_152323	NP_689536	Q8N5J4	SPIC_HUMAN	Spi-C transcription factor (Spi-1/PU.1 related)	152	ETS.					nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			skin(1)	1						AAAACTTGCCGAGCTTTGGGG	0.413000													14	100					0	0	1	0	0
GNPTAB	79158	broad.mit.edu	37	12	102158356	102158356	+	Missense_Mutation	SNP	C	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr12:102158356C>A	uc001tit.2	-	13	2518	c.2339G>T	c.(2338-2340)GGA>GTA	p.G780V		NM_024312	NP_077288	Q3T906	GNPTA_HUMAN	N-acetylglucosamine-1-phosphate transferase	780					cell differentiation	Golgi membrane|integral to membrane|nucleus	metal ion binding|transcription factor binding|UDP-N-acetylglucosamine-lysosomal-enzyme N-acetylglucosaminephosphotransferase activity			ovary(1)|skin(1)	2						TTCAGACACTCCTAAGCTGTT	0.413000													33	114					1.836e-18	1.91563e-18	1	1	0
STAB2	55576	broad.mit.edu	37	12	104131462	104131462	+	Silent	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr12:104131462C>T	uc001tjw.2	+	53	5787	c.5601C>T	c.(5599-5601)CTC>CTT	p.L1867L	STAB2_uc009zug.2_RNA	NM_017564	NP_060034	Q8WWQ8	STAB2_HUMAN	stabilin 2 precursor	1867	Extracellular (Potential).|FAS1 6.				angiogenesis|cell adhesion|defense response to bacterium|receptor-mediated endocytosis	cytoplasm|external side of plasma membrane|integral to plasma membrane	Gram-negative bacterial cell surface binding|hyaluronic acid binding|low-density lipoprotein receptor activity|protein disulfide oxidoreductase activity|scavenger receptor activity			ovary(9)|skin(5)	14						AGCGGGAGCTCTTGTTTGACC	0.433000													26	102					0	0	1	0	0
APPL2	55198	broad.mit.edu	37	12	105601801	105601801	+	Missense_Mutation	SNP	T	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr12:105601801T>G	uc001tlf.1	-	7	640	c.422A>C	c.(421-423)GAC>GCC	p.D141A	APPL2_uc010swt.1_Missense_Mutation_p.D98A|APPL2_uc001tlg.1_5'UTR|APPL2_uc010swu.1_Missense_Mutation_p.D147A|APPL2_uc009zuq.2_Missense_Mutation_p.D98A	NM_018171	NP_060641	Q8NEU8	DP13B_HUMAN	adaptor protein, phosphotyrosine interaction, PH	141	Required for RAB5A binding (By similarity).				cell cycle|cell proliferation|signal transduction	early endosome membrane|nucleus	protein binding			upper_aerodigestive_tract(1)	1						CATTGAGAGGTCATGCTCTAA	0.443000													49	142					0	0	1	0	0
NUAK1	9891	broad.mit.edu	37	12	106460917	106460917	+	Missense_Mutation	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr12:106460917G>A	uc001tlj.1	-	7	3029	c.1649C>T	c.(1648-1650)TCC>TTC	p.S550F		NM_014840	NP_055655	O60285	NUAK1_HUMAN	AMPK-related protein kinase 5	550							ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity			ovary(1)|central_nervous_system(1)	2						CTCTGACAGGGATTCCAGTGT	0.607000													21	53					0	0	1	0	0
POLR3B	55703	broad.mit.edu	37	12	106853091	106853091	+	Missense_Mutation	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr12:106853091C>T	uc001tlp.2	+	22	2737	c.2515C>T	c.(2515-2517)CCT>TCT	p.P839S	POLR3B_uc001tlq.2_Missense_Mutation_p.P781S	NM_018082	NP_060552	Q9NW08	RPC2_HUMAN	DNA-directed RNA polymerase III B isoform 1	839					innate immune response|positive regulation of innate immune response|positive regulation of interferon-beta production|response to virus|termination of RNA polymerase III transcription|transcription elongation from RNA polymerase III promoter	nucleoplasm	DNA binding|DNA-directed RNA polymerase activity|metal ion binding|ribonucleoside binding			ovary(1)|central_nervous_system(1)	2						GACTCAGATTCCTTTGGAAGG	0.383000													25	78					0	0	1	0	0
CRY1	1407	broad.mit.edu	37	12	107391157	107391157	+	Silent	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr12:107391157C>G	uc001tmi.3	-	10	2359	c.1500G>C	c.(1498-1500)CTG>CTC	p.L500L		NM_004075	NP_004066	Q16526	CRY1_HUMAN	cryptochrome 1 (photolyase-like)	500					DNA repair|protein-chromophore linkage|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	blue light photoreceptor activity|DNA photolyase activity|double-stranded DNA binding|nucleotide binding|protein binding			ovary(3)	3						GTACTGATGCCAGAAGACCTA	0.353000													59	205					0	0	1	0	0
MMAB	326625	broad.mit.edu	37	12	110006640	110006640	+	Missense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr12:110006640C>G	uc001tou.2	-	3	298	c.225G>C	c.(223-225)AGG>AGC	p.R75S	MMAB_uc001tov.2_RNA|MMAB_uc001tow.2_RNA|MMAB_uc010sxq.1_5'UTR|MMAB_uc001tox.2_Intron	NM_052845	NP_443077	Q96EY8	MMAB_HUMAN	cob(I)alamin adenosyltransferase precursor	75					cobalamin biosynthetic process	mitochondrion	ATP binding|cob(I)yrinic acid a,c-diamide adenosyltransferase activity				0					Cyanocobalamin(DB00115)|Hydroxocobalamin(DB00200)	CTTTGGGTCTCCTTTCTCCTG	0.398000													26	98					0	0	1	0	0
TRPV4	59341	broad.mit.edu	37	12	110221551	110221551	+	Missense_Mutation	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr12:110221551C>T	uc001tpj.1	-	15	2586	c.2491G>A	c.(2491-2493)GAA>AAA	p.E831K	TRPV4_uc001tpg.1_Missense_Mutation_p.E797K|TRPV4_uc001tph.1_Missense_Mutation_p.E784K|TRPV4_uc001tpi.1_Missense_Mutation_p.E724K|TRPV4_uc001tpk.1_Missense_Mutation_p.E831K|TRPV4_uc001tpl.1_Missense_Mutation_p.E771K	NM_021625	NP_067638	Q9HBA0	TRPV4_HUMAN	transient receptor potential cation channel,	831	Interaction with calmodulin.|Cytoplasmic (Potential).				actin cytoskeleton reorganization|actin filament organization|calcium ion import|cell death|cell volume homeostasis|cell-cell junction assembly|cellular hypotonic response|cortical microtubule organization|elevation of cytosolic calcium ion concentration|microtubule polymerization|negative regulation of neuron projection development|osmosensory signaling pathway|positive regulation of microtubule depolymerization|response to mechanical stimulus	cortical actin cytoskeleton|filopodium|focal adhesion|growth cone|integral to membrane|lamellipodium|ruffle membrane	actin filament binding|alpha-tubulin binding|beta-tubulin binding|calcium channel activity|calmodulin binding|microtubule binding|protein binding|protein kinase C binding|SH2 domain binding			ovary(2)|haematopoietic_and_lymphoid_tissue(1)|skin(1)	4						TTGTTCAGTTCCACCACGCGG	0.577000													16	62					0	0	1	0	0
TRPV4	59341	broad.mit.edu	37	12	110222220	110222220	+	Missense_Mutation	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr12:110222220G>A	uc001tpj.1	-	14	2454	c.2359C>T	c.(2359-2361)CAC>TAC	p.H787Y	TRPV4_uc001tpg.1_Missense_Mutation_p.H753Y|TRPV4_uc001tph.1_Missense_Mutation_p.H740Y|TRPV4_uc001tpi.1_Missense_Mutation_p.H680Y|TRPV4_uc001tpk.1_Missense_Mutation_p.H787Y|TRPV4_uc001tpl.1_Missense_Mutation_p.H727Y	NM_021625	NP_067638	Q9HBA0	TRPV4_HUMAN	transient receptor potential cation channel,	787	Cytoplasmic (Potential).				actin cytoskeleton reorganization|actin filament organization|calcium ion import|cell death|cell volume homeostasis|cell-cell junction assembly|cellular hypotonic response|cortical microtubule organization|elevation of cytosolic calcium ion concentration|microtubule polymerization|negative regulation of neuron projection development|osmosensory signaling pathway|positive regulation of microtubule depolymerization|response to mechanical stimulus	cortical actin cytoskeleton|filopodium|focal adhesion|growth cone|integral to membrane|lamellipodium|ruffle membrane	actin filament binding|alpha-tubulin binding|beta-tubulin binding|calcium channel activity|calmodulin binding|microtubule binding|protein binding|protein kinase C binding|SH2 domain binding			ovary(2)|haematopoietic_and_lymphoid_tissue(1)|skin(1)	4						TGGTTCCAGTGAGACCAGTTC	0.607000													36	105					0	0	1	0	0
BRAP	8315	broad.mit.edu	37	12	112119640	112119640	+	Splice_Site	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr12:112119640C>G	uc001tsn.3	-	3	439	c.245_splice	c.e3-1	p.D82_splice	BRAP_uc010syh.1_Splice_Site|BRAP_uc009zvv.2_Splice_Site_p.D52_splice	NM_006768	NP_006759	Q7Z569	BRAP_HUMAN	BRCA1 associated protein						MAPKKK cascade|negative regulation of signal transduction|Ras protein signal transduction	cytoplasm|ubiquitin ligase complex	identical protein binding|nuclear localization sequence binding|nucleotide binding|ubiquitin-protein ligase activity|zinc ion binding			lung(1)	1						TTTAGTTCATCTTTCACCAGT	0.373000													11	61					0	0	1	0	0
TPCN1	53373	broad.mit.edu	37	12	113714774	113714774	+	Silent	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr12:113714774C>T	uc001tuw.2	+	11	1290	c.993C>T	c.(991-993)TTC>TTT	p.F331F	TPCN1_uc001tux.2_Silent_p.F403F|TPCN1_uc010syt.1_Silent_p.F263F	NM_017901	NP_060371	Q9ULQ1	TPC1_HUMAN	two pore segment channel 1 isoform 2	331	Cytoplasmic (Potential).					endosome membrane|integral to membrane|lysosomal membrane	NAADP-sensitive calcium-release channel activity|voltage-gated ion channel activity			skin(2)|ovary(1)	3						AACGCAAGTTCAAGTCTTTGC	0.557000													90	279					0	0	1	0	0
TAOK3	51347	broad.mit.edu	37	12	118619388	118619388	+	Missense_Mutation	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr12:118619388C>T	uc001twx.2	-	15	1649	c.1354G>A	c.(1354-1356)GAG>AAG	p.E452K	TAOK3_uc001twv.2_5'UTR|TAOK3_uc001tww.2_Missense_Mutation_p.E282K|TAOK3_uc001twy.3_Missense_Mutation_p.E452K	NM_016281	NP_057365	Q9H2K8	TAOK3_HUMAN	TAO kinase 3	452	Potential.				MAPKKK cascade|negative regulation of JNK cascade|positive regulation of JNK cascade|protein autophosphorylation	mitochondrion|plasma membrane	ATP binding|protein kinase inhibitor activity|protein serine/threonine kinase activity			lung(5)|central_nervous_system(1)	6	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)					TTCTCCTGCTCATGCTCATGG	0.522000											OREG0022177	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	4	97					0	0	1	0	0
GCN1L1	10985	broad.mit.edu	37	12	120574368	120574368	+	Missense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr12:120574368C>G	uc001txo.2	-	51	6959	c.6946G>C	c.(6946-6948)GAC>CAC	p.D2316H		NM_006836	NP_006827	Q92616	GCN1L_HUMAN	GCN1 general control of amino-acid synthesis	2316					regulation of translation	ribosome	protein binding|translation factor activity, nucleic acid binding			ovary(4)	4	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)					CTGAACCTGTCCCCCAGGATG	0.577000													10	100					0	0	1	0	0
GCN1L1	10985	broad.mit.edu	37	12	120575381	120575381	+	Nonsense_Mutation	SNP	C	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr12:120575381C>A	uc001txo.2	-	49	6644	c.6631G>T	c.(6631-6633)GAG>TAG	p.E2211*		NM_006836	NP_006827	Q92616	GCN1L_HUMAN	GCN1 general control of amino-acid synthesis	2211	HEAT 19.				regulation of translation	ribosome	protein binding|translation factor activity, nucleic acid binding			ovary(4)	4	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)					TCCCAGCTCTCCTCCAGAACC	0.478000													8	126					0.000442599	0.000449111	1	1	0
MSI1	4440	broad.mit.edu	37	12	120800870	120800870	+	Silent	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr12:120800870C>T	uc001tye.1	-	6	442	c.378G>A	c.(376-378)AAG>AAA	p.K126K		NM_002442	NP_002433	O43347	MSI1H_HUMAN	musashi 1	126	RRM 2.				nervous system development	cytoplasm|nucleus	nucleotide binding			central_nervous_system(2)|breast(1)	3	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)					CAAAATATTGCTTCACGTCCT	0.537000													42	162					0	0	1	0	0
C12orf43	64897	broad.mit.edu	37	12	121454196	121454196	+	Missense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr12:121454196C>G	uc001tzh.1	-	1	105	c.82G>C	c.(82-84)GAG>CAG	p.E28Q	C12orf43_uc009zxa.1_Missense_Mutation_p.E28Q|C12orf43_uc010szo.1_5'UTR|C12orf43_uc010szp.1_Missense_Mutation_p.E28Q|C12orf43_uc001tzi.1_Missense_Mutation_p.E28Q	NM_022895	NP_075046	Q96C57	CL043_HUMAN	hypothetical protein LOC64897	28											0	all_neural(191;0.0684)|Medulloblastoma(191;0.0922)					ATTGCCGCCTCGCGGCACCGC	0.637000													21	44					0	0	1	0	0
KNTC1	9735	broad.mit.edu	37	12	123058851	123058851	+	Nonsense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr12:123058851C>G	uc001ucv.2	+	27	2469	c.2306C>G	c.(2305-2307)TCA>TGA	p.S769*	KNTC1_uc010taf.1_Nonsense_Mutation_p.S732*	NM_014708	NP_055523	P50748	KNTC1_HUMAN	Rough Deal homolog, centromere/kinetochore	769					cell division|mitotic cell cycle checkpoint|mitotic prometaphase|protein complex assembly|regulation of exit from mitosis	condensed chromosome kinetochore|cytosol|kinetochore microtubule|nucleus|spindle pole	protein binding			ovary(5)|kidney(3)|lung(1)|central_nervous_system(1)	10	all_neural(191;0.0837)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;7.21e-05)|Epithelial(86;0.000178)|BRCA - Breast invasive adenocarcinoma(302;0.217)		AGATGCAGCTCAAAGTCCACA	0.358000													3	23					0	0	1	0	0
SBNO1	55206	broad.mit.edu	37	12	123793919	123793919	+	Missense_Mutation	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr12:123793919C>T	uc010tap.1	-	27	3568	c.3568G>A	c.(3568-3570)GAA>AAA	p.E1190K	SBNO1_uc009zxv.2_RNA|SBNO1_uc010tao.1_Missense_Mutation_p.E1189K|SBNO1_uc010taq.1_Missense_Mutation_p.E141K|SBNO1_uc001ues.1_Missense_Mutation_p.E141K	NM_018183	NP_060653	A3KN83	SBNO1_HUMAN	sno, strawberry notch homolog 1	1190							ATP binding|DNA binding|hydrolase activity			breast(5)|skin(2)|ovary(1)|kidney(1)	9	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;0.000701)|Epithelial(86;0.00197)		TTGGTAGCTTCCTCCCATGAC	0.383000													5	157					0	0	1	0	0
SBNO1	55206	broad.mit.edu	37	12	123829921	123829921	+	Missense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr12:123829921G>C	uc010tap.1	-	3	434	c.434C>G	c.(433-435)TCT>TGT	p.S145C	SBNO1_uc010tao.1_Missense_Mutation_p.S144C|SBNO1_uc010taq.1_Intron|SBNO1_uc001uet.2_Missense_Mutation_p.S145C|SBNO1_uc001ueu.2_Missense_Mutation_p.S144C|SBNO1_uc001uev.2_Missense_Mutation_p.S143C|SBNO1_uc009zxy.1_Missense_Mutation_p.S110C	NM_018183	NP_060653	A3KN83	SBNO1_HUMAN	sno, strawberry notch homolog 1	145							ATP binding|DNA binding|hydrolase activity			breast(5)|skin(2)|ovary(1)|kidney(1)	9	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;0.000701)|Epithelial(86;0.00197)		TGAAGGTGCAGAGGTCATGGC	0.418000													4	169					0	0	1	0	0
TCTN2	79867	broad.mit.edu	37	12	124158229	124158229	+	Missense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr12:124158229C>G	uc001ufp.2	+	4	463	c.335C>G	c.(334-336)TCC>TGC	p.S112C	TCTN2_uc009zya.2_Missense_Mutation_p.S111C	NM_024809	NP_079085	Q96GX1	TECT2_HUMAN	tectonic family member 2 isoform 1	112	Extracellular (Potential).				cilium assembly|smoothened signaling pathway	integral to membrane				ovary(1)	1	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;0.000163)|Epithelial(86;0.000502)|all cancers(50;0.00451)		GAGACAGATTCCTTCTCAGAG	0.443000													46	133					0	0	1	0	0
TCTN2	79867	broad.mit.edu	37	12	124158264	124158264	+	Silent	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr12:124158264C>T	uc001ufp.2	+	4	498	c.370C>T	c.(370-372)CTG>TTG	p.L124L	TCTN2_uc009zya.2_Silent_p.L123L	NM_024809	NP_079085	Q96GX1	TECT2_HUMAN	tectonic family member 2 isoform 1	124	Extracellular (Potential).				cilium assembly|smoothened signaling pathway	integral to membrane				ovary(1)	1	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;0.000163)|Epithelial(86;0.000502)|all cancers(50;0.00451)		CCAGACCCTTCTGGTTTCAGC	0.478000													52	189					0	0	1	0	0
LOC284232	284232	broad.mit.edu	37	13	19429170	19429170	+	RNA	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr13:19429170C>G	uc010tcj.1	-	1		c.16940G>C				NR_027995				Homo sapiens ankyrin repeat domain 20 family, member A2 pseudogene (LOC284232), non-coding RNA.												0						ctcaagcaatcttcccacctc	0.010000													2	3					0	0	1	0	0
RNF17	56163	broad.mit.edu	37	13	25378559	25378559	+	Missense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr13:25378559C>G	uc001upr.2	+	15	2124	c.2083C>G	c.(2083-2085)CTT>GTT	p.L695V	RNF17_uc010tdd.1_Missense_Mutation_p.L554V|RNF17_uc010aab.2_Intron|RNF17_uc010tde.1_Missense_Mutation_p.L695V|RNF17_uc001ups.2_Missense_Mutation_p.L634V	NM_031277	NP_112567	Q9BXT8	RNF17_HUMAN	ring finger protein 17	695					multicellular organismal development	cytoplasm|nucleus	hydrolase activity, acting on ester bonds|nucleic acid binding|zinc ion binding			ovary(1)|skin(1)	2		Lung SC(185;0.0225)|Breast(139;0.077)		all cancers(112;0.0114)|OV - Ovarian serous cystadenocarcinoma(117;0.0311)|Epithelial(112;0.0524)		AGATTTCTATCTTCAGTTGGT	0.274000													6	39					0	0	1	0	0
RNF17	56163	broad.mit.edu	37	13	25417973	25417973	+	Missense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr13:25417973C>G	uc001upr.2	+	20	2736	c.2695C>G	c.(2695-2697)CCT>GCT	p.P899A	RNF17_uc010tdd.1_Missense_Mutation_p.P758A|RNF17_uc010aab.2_RNA|RNF17_uc010tde.1_Missense_Mutation_p.P899A|RNF17_uc001ups.2_Missense_Mutation_p.P838A|RNF17_uc010aac.2_Missense_Mutation_p.P97A|RNF17_uc010aad.2_Translation_Start_Site	NM_031277	NP_112567	Q9BXT8	RNF17_HUMAN	ring finger protein 17	899					multicellular organismal development	cytoplasm|nucleus	hydrolase activity, acting on ester bonds|nucleic acid binding|zinc ion binding			ovary(1)|skin(1)	2		Lung SC(185;0.0225)|Breast(139;0.077)		all cancers(112;0.0114)|OV - Ovarian serous cystadenocarcinoma(117;0.0311)|Epithelial(112;0.0524)		CAACTTAAATCCTGTGTCTGC	0.318000													19	76					0	0	1	0	0
PABPC3	5042	broad.mit.edu	37	13	25671651	25671651	+	Missense_Mutation	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr13:25671651C>T	uc001upy.2	+	1	1376	c.1315C>T	c.(1315-1317)CAT>TAT	p.H439Y		NM_030979	NP_112241	Q9H361	PABP3_HUMAN	poly(A) binding protein, cytoplasmic 3	439					mRNA metabolic process	cytoplasm	nucleotide binding|poly(A) RNA binding			ovary(3)|skin(1)	4		Lung SC(185;0.0225)|Breast(139;0.0602)		all cancers(112;0.0071)|Epithelial(112;0.0398)|OV - Ovarian serous cystadenocarcinoma(117;0.151)|GBM - Glioblastoma multiforme(144;0.222)|Lung(94;0.241)		TGCCAGACCTCATCCATTCCA	0.512000													63	150					0	0	1	0	0
CDK8	1024	broad.mit.edu	37	13	26959424	26959424	+	Silent	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr13:26959424C>T	uc001uqr.1	+	6	617	c.591C>T	c.(589-591)TTC>TTT	p.F197F	CDK8_uc001uqs.1_Silent_p.F197F|CDK8_uc001uqt.1_Silent_p.F24F	NM_001260	NP_001251	P49336	CDK8_HUMAN	cyclin-dependent kinase 8	197	Protein kinase.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	mediator complex	ATP binding|cyclin-dependent protein kinase activity|protein binding|RNA polymerase II carboxy-terminal domain kinase activity			lung(2)|large_intestine(1)|ovary(1)|skin(1)	5	Colorectal(5;0.000442)	Lung SC(185;0.0156)|Breast(139;0.147)		all cancers(112;0.0384)|Epithelial(112;0.142)|OV - Ovarian serous cystadenocarcinoma(117;0.188)		TTGTTACATTCTGGTACCGAG	0.348000													12	82					0	0	1	0	0
LNX2	222484	broad.mit.edu	37	13	28143343	28143343	+	Missense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr13:28143343C>G	uc001url.3	-	3	787	c.478G>C	c.(478-480)GAG>CAG	p.E160Q	LNX2_uc001urm.1_Missense_Mutation_p.E160Q	NM_153371	NP_699202	Q8N448	LNX2_HUMAN	ligand of numb-protein X 2	160							zinc ion binding			ovary(2)|upper_aerodigestive_tract(1)|lung(1)|kidney(1)|central_nervous_system(1)	6		Lung SC(185;0.0156)	Colorectal(13;0.000157)|READ - Rectum adenocarcinoma(15;0.105)	OV - Ovarian serous cystadenocarcinoma(117;0.113)|all cancers(112;0.127)|Epithelial(112;0.248)		TTTTCATTCTCAATCTCTGCT	0.488000													16	339					0	0	1	0	0
SLC46A3	283537	broad.mit.edu	37	13	29286975	29286975	+	Nonsense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr13:29286975G>C	uc001usi.2	-	2	1872	c.902C>G	c.(901-903)TCA>TGA	p.S301*	SLC46A3_uc001usg.2_Nonsense_Mutation_p.S226*|SLC46A3_uc001usj.2_Nonsense_Mutation_p.S301*|SLC46A3_uc001ush.2_Nonsense_Mutation_p.S301*|SLC46A3_uc001usk.2_Nonsense_Mutation_p.S226*	NM_181785	NP_861450	Q7Z3Q1	S46A3_HUMAN	solute carrier family 46, member 3 isoform a	301	Helical; (Potential).				transmembrane transport	integral to membrane				central_nervous_system(1)|skin(1)	2		Lung SC(185;0.0367)		all cancers(112;0.159)		ACCCAAAGCTGATCCATAACC	0.348000													18	50					0	0	1	0	0
B3GALTL	145173	broad.mit.edu	37	13	31858829	31858829	+	Missense_Mutation	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr13:31858829G>A	uc010aaz.2	+	11	1005	c.895G>A	c.(895-897)GAA>AAA	p.E299K	B3GALTL_uc001utn.3_RNA	NM_194318	NP_919299	Q6Y288	B3GLT_HUMAN	beta 1,3-galactosyltransferase-like	299	Lumenal (Potential).				fucose metabolic process	endoplasmic reticulum membrane|integral to membrane	transferase activity, transferring glycosyl groups			ovary(2)	2		Lung SC(185;0.0257)		all cancers(112;0.00436)|Epithelial(112;0.0285)|OV - Ovarian serous cystadenocarcinoma(117;0.0512)|GBM - Glioblastoma multiforme(144;0.184)		AAGTCTCATTGAATACTATAG	0.373000													14	76					0	0	1	0	0
RXFP2	122042	broad.mit.edu	37	13	32371488	32371488	+	Missense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr13:32371488C>G	uc001utt.2	+	17	2008	c.1937C>G	c.(1936-1938)TCT>TGT	p.S646C	RXFP2_uc010aba.2_Missense_Mutation_p.S605C	NM_130806	NP_570718	Q8WXD0	RXFP2_HUMAN	relaxin/insulin-like family peptide receptor 2	646	Helical; Name=6; (Potential).					integral to membrane|plasma membrane					0		Lung SC(185;0.0262)		all cancers(112;0.000559)|Epithelial(112;0.0017)|OV - Ovarian serous cystadenocarcinoma(117;0.0145)|BRCA - Breast invasive adenocarcinoma(63;0.0535)		ATAGTGTTCTCTGATGCCATC	0.403000													26	126					0	0	1	0	0
FAM48A	55578	broad.mit.edu	37	13	37598223	37598223	+	Missense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr13:37598223G>C	uc001uwg.2	-	19	1788	c.1540C>G	c.(1540-1542)CAA>GAA	p.Q514E	FAM48A_uc010abt.2_Missense_Mutation_p.Q515E|FAM48A_uc001uwh.2_Missense_Mutation_p.Q515E|FAM48A_uc001uwi.2_Missense_Mutation_p.Q514E|FAM48A_uc001uwj.2_Missense_Mutation_p.Q515E|FAM48A_uc001uwk.2_Missense_Mutation_p.Q514E|FAM48A_uc010tes.1_Missense_Mutation_p.Q478E|FAM48A_uc001uwl.1_Missense_Mutation_p.Q514E|FAM48A_uc001uwd.2_5'Flank|FAM48A_uc001uwe.2_Translation_Start_Site|FAM48A_uc001uwf.2_Missense_Mutation_p.Q92E	NM_001014286	NP_001014308	Q8NEM7	FA48A_HUMAN	family with sequence similarity 48, member A	514					autophagy|gastrulation	SAGA-type complex	protein binding				0		Lung NSC(96;2.09e-06)|Breast(139;0.014)|Lung SC(185;0.0548)|Prostate(109;0.0959)		all cancers(112;6.06e-07)|Epithelial(112;1.87e-05)|OV - Ovarian serous cystadenocarcinoma(117;0.00794)|BRCA - Breast invasive adenocarcinoma(63;0.0128)|GBM - Glioblastoma multiforme(144;0.0477)		ATGCTAACTTGATTGAGATCC	0.403000													18	74					0	0	1	0	0
POSTN	10631	broad.mit.edu	37	13	38164624	38164624	+	Missense_Mutation	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr13:38164624C>T	uc001uwo.3	-	4	444	c.326G>A	c.(325-327)GGA>GAA	p.G109E	POSTN_uc001uwp.3_Missense_Mutation_p.G109E|POSTN_uc001uwr.2_Missense_Mutation_p.G109E|POSTN_uc001uwq.2_Missense_Mutation_p.G109E|POSTN_uc010teu.1_Missense_Mutation_p.G109E|POSTN_uc010tev.1_Missense_Mutation_p.G109E|POSTN_uc010tew.1_Missense_Mutation_p.G109E|POSTN_uc010tex.1_Missense_Mutation_p.G24E	NM_006475	NP_006466	Q15063	POSTN_HUMAN	periostin, osteoblast specific factor isoform 1	109	FAS1 1.				cell adhesion|skeletal system development	proteinaceous extracellular matrix	heparin binding			ovary(2)	2		Lung NSC(96;2.09e-05)|Prostate(109;0.0513)|Breast(139;0.0538)|Lung SC(185;0.0743)		all cancers(112;2.48e-08)|Epithelial(112;2.78e-06)|OV - Ovarian serous cystadenocarcinoma(117;0.000853)|BRCA - Breast invasive adenocarcinoma(63;0.013)|GBM - Glioblastoma multiforme(144;0.0154)		TGTGGTGGCTCCCACGATGCC	0.458000													7	45					0	0	1	0	0
FOXO1	2308	broad.mit.edu	37	13	41134632	41134632	+	Missense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr13:41134632C>G	uc001uxl.3	-	2	1381	c.996G>C	c.(994-996)ATG>ATC	p.M332I	FOXO1_uc010acc.1_Missense_Mutation_p.M147I	NM_002015	NP_002006	Q12778	FOXO1_HUMAN	forkhead box O1	332					anti-apoptosis|blood vessel development|embryo development|endocrine pancreas development|insulin receptor signaling pathway|negative regulation of stress-activated MAPK cascade|nerve growth factor receptor signaling pathway|pattern specification process|phosphatidylinositol-mediated signaling|positive regulation of transcription from RNA polymerase II promoter|regulation of cell proliferation|regulation of sequence-specific DNA binding transcription factor activity|response to DNA damage stimulus|tissue development	cytosol|transcription factor complex	DNA bending activity|double-stranded DNA binding|promoter binding|protein kinase binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription factor binding		PAX3/FOXO1(749)|PAX7/FOXO1(197)	soft_tissue(946)|lung(1)|central_nervous_system(1)	948		Lung NSC(96;1.18e-05)|Breast(139;0.00394)|Prostate(109;0.0181)|Lung SC(185;0.0262)|Hepatocellular(188;0.194)		all cancers(112;7.32e-09)|Epithelial(112;2.87e-06)|OV - Ovarian serous cystadenocarcinoma(117;6.98e-05)|GBM - Glioblastoma multiforme(144;0.00394)|BRCA - Breast invasive adenocarcinoma(63;0.0815)		CCTGTTCGGTCATAATGGGTG	0.473000													4	159					0	0	1	0	0
AKAP11	11215	broad.mit.edu	37	13	42876457	42876457	+	Nonsense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr13:42876457C>G	uc001uys.1	+	8	3750	c.3575C>G	c.(3574-3576)TCA>TGA	p.S1192*		NM_016248	NP_057332	Q9UKA4	AKA11_HUMAN	A-kinase anchor protein 11	1192					intracellular protein kinase cascade	microtubule organizing center	protein kinase A binding|protein phosphatase 1 binding			ovary(1)|central_nervous_system(1)	2		Lung NSC(96;1.86e-05)|Prostate(109;0.0165)|Lung SC(185;0.0262)|Breast(139;0.0707)|Hepatocellular(98;0.114)		OV - Ovarian serous cystadenocarcinoma(117;0.000365)|GBM - Glioblastoma multiforme(144;0.00116)|BRCA - Breast invasive adenocarcinoma(63;0.19)		TCGGAGCACTCAGGGAAGAAG	0.413000													5	108					0	0	1	0	0
ZC3H13	23091	broad.mit.edu	37	13	46594685	46594685	+	Missense_Mutation	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr13:46594685G>A	uc010tfw.1	-	4	353	c.347C>T	c.(346-348)TCT>TTT	p.S116F	ZC3H13_uc001vas.1_Missense_Mutation_p.S116F|ZC3H13_uc001vat.1_Missense_Mutation_p.S116F	NM_015070	NP_055885	Q5T200	ZC3HD_HUMAN	zinc finger CCCH-type containing 13	116							nucleic acid binding|zinc ion binding			ovary(1)|lung(1)	2		Lung NSC(96;7.26e-05)|Breast(56;0.000118)|Prostate(109;0.00217)|Hepatocellular(98;0.0207)|Lung SC(185;0.0262)	KIRC - Kidney renal clear cell carcinoma(16;0.234)	GBM - Glioblastoma multiforme(144;4.18e-05)		CCCTCTTGAAGATTCTTTCTA	0.279000													13	43					0	0	1	0	0
C13orf18	80183	broad.mit.edu	37	13	46935611	46935611	+	Nonsense_Mutation	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr13:46935611G>A	uc010acl.2	-	8	1689	c.1084C>T	c.(1084-1086)CAG>TAG	p.Q362*	C13orf18_uc001vbf.3_Nonsense_Mutation_p.Q295*|C13orf18_uc001vbg.3_Nonsense_Mutation_p.Q90*|C13orf18_uc010tfz.1_Nonsense_Mutation_p.Q205*|C13orf18_uc010acm.2_Nonsense_Mutation_p.Q227*|C13orf18_uc010acn.2_Nonsense_Mutation_p.Q147*|C13orf18_uc001vbe.3_Nonsense_Mutation_p.Q362*|C13orf18_uc001vbh.3_Nonsense_Mutation_p.Q362*|C13orf18_uc001vbi.3_Nonsense_Mutation_p.Q205*|C13orf18_uc010aco.1_Nonsense_Mutation_p.Q362*	NM_025113	NP_079389	Q9H714	CM018_HUMAN	hypothetical protein LOC80183	362											0		Lung NSC(96;2.31e-05)|Breast(56;8.04e-05)|Prostate(109;0.00217)|Hepatocellular(98;0.0207)|Lung SC(185;0.0262)	KIRC - Kidney renal clear cell carcinoma(16;0.234)	GBM - Glioblastoma multiforme(144;2.19e-05)		CCTGCCAGCTGAGAATTAACT	0.438000													15	41					0	0	1	0	0
LRCH1	23143	broad.mit.edu	37	13	47286683	47286683	+	Silent	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr13:47286683C>T	uc001vbj.2	+	15	1841	c.1605C>T	c.(1603-1605)GTC>GTT	p.V535V	LRCH1_uc001vbk.2_Silent_p.V535V|LRCH1_uc001vbl.3_Silent_p.V535V	NM_015116	NP_055931	Q9Y2L9	LRCH1_HUMAN	leucine-rich repeats and calponin homology (CH)	535										ovary(1)|central_nervous_system(1)	2		all_lung(13;5.61e-07)|Lung NSC(96;0.000117)|Breast(56;0.000141)|Prostate(109;0.0029)|Lung SC(185;0.0367)|Myeloproliferative disorder(33;0.0505)|Hepatocellular(98;0.0556)	KIRC - Kidney renal clear cell carcinoma(16;0.234)	GBM - Glioblastoma multiforme(144;0.000123)		CCCCTGCAGTCTCTCCTACCA	0.403000													5	220					0	0	1	0	0
KPNA3	3839	broad.mit.edu	37	13	50366636	50366636	+	Missense_Mutation	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr13:50366636C>T	uc001vdj.2	-	1	422	c.7G>A	c.(7-9)GAG>AAG	p.E3K		NM_002267	NP_002258	O00505	IMA3_HUMAN	karyopherin alpha 3	3	IBB.				interspecies interaction between organisms|NLS-bearing substrate import into nucleus|protein complex assembly	cytoplasm|nuclear pore	nuclear localization sequence binding|protein transporter activity				0		Lung NSC(96;2.46e-05)|Breast(56;9.7e-05)|Prostate(109;0.00174)|Hepatocellular(98;0.0207)|Myeloproliferative disorder(33;0.163)|Lung SC(185;0.187)|all_neural(104;0.19)		GBM - Glioblastoma multiforme(99;1.42e-09)		CTGGGGTTCTCGGCCATGGCT	0.393000													11	52					0	0	1	0	0
DHRS12	79758	broad.mit.edu	37	13	52348140	52348140	+	Nonsense_Mutation	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr13:52348140G>A	uc001vfq.2	-	7	589	c.541C>T	c.(541-543)CAG>TAG	p.Q181*	DHRS12_uc001vfr.1_Nonsense_Mutation_p.Q132*|DHRS12_uc001vfs.1_Nonsense_Mutation_p.Q132*			A0PJE2	DHR12_HUMAN	RecName: Full=Dehydrogenase/reductase SDR family member 12;          EC=1.1.-.-;	181							binding|oxidoreductase activity				0		Breast(56;0.00173)|Prostate(109;0.00899)|Lung NSC(96;0.0199)|Hepatocellular(98;0.152)|Glioma(44;0.236)		GBM - Glioblastoma multiforme(99;2.81e-08)		TTCAGTTTCTGAACCAACATT	0.453000													26	74					0	0	1	0	0
UTP14C	9724	broad.mit.edu	37	13	52604768	52604768	+	Missense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr13:52604768G>C	uc001vgb.2	+	2	2363	c.1828G>C	c.(1828-1830)GAG>CAG	p.E610Q	UTP14C_uc001vgc.2_RNA	NM_021645	NP_067677	Q5TAP6	UT14C_HUMAN	UTP14, U3 small nucleolar ribonucleoprotein,	610					cell differentiation|meiosis|multicellular organismal development|rRNA processing|spermatogenesis	nucleolus|small-subunit processome				ovary(3)|large_intestine(1)|breast(1)	5		Breast(56;0.00173)|Lung NSC(96;0.0108)|Prostate(109;0.0412)|Hepatocellular(98;0.152)|Glioma(44;0.236)		GBM - Glioblastoma multiforme(99;2.3e-08)		TTTCTTGAAAGAGAAGAGGGA	0.517000													22	69					0	0	1	0	0
NEK5	341676	broad.mit.edu	37	13	52657447	52657447	+	Missense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr13:52657447C>G	uc001vge.2	-	17	1661	c.1521G>C	c.(1519-1521)AAG>AAC	p.K507N		NM_199289	NP_954983	Q6P3R8	NEK5_HUMAN	NIMA-related kinase 5	507							ATP binding|metal ion binding|protein serine/threonine kinase activity			upper_aerodigestive_tract(1)	1		Breast(56;0.00173)|Lung NSC(96;0.0168)|Prostate(109;0.0412)|Hepatocellular(98;0.152)|Glioma(44;0.236)		GBM - Glioblastoma multiforme(99;3.7e-08)		GCAGGTTACTCTTCTTCACCA	0.423000													27	91					0	0	1	0	0
NEK5	341676	broad.mit.edu	37	13	52667254	52667254	+	Nonsense_Mutation	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr13:52667254G>A	uc001vge.2	-	13	1284	c.1144C>T	c.(1144-1146)CAA>TAA	p.Q382*	NEK5_uc001vgf.2_Nonsense_Mutation_p.Q382*	NM_199289	NP_954983	Q6P3R8	NEK5_HUMAN	NIMA-related kinase 5	382							ATP binding|metal ion binding|protein serine/threonine kinase activity			upper_aerodigestive_tract(1)	1		Breast(56;0.00173)|Lung NSC(96;0.0168)|Prostate(109;0.0412)|Hepatocellular(98;0.152)|Glioma(44;0.236)		GBM - Glioblastoma multiforme(99;3.7e-08)		GTATTTTCTTGAGGAATAGGG	0.418000													26	91					0	0	1	0	0
HNRNPA1L2	144983	broad.mit.edu	37	13	53216872	53216872	+	Missense_Mutation	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr13:53216872G>A	uc001vgx.1	+	7	1318	c.245G>A	c.(244-246)AGA>AAA	p.R82K	HNRNPA1L2_uc001vgy.1_Missense_Mutation_p.R82K|HNRNPA1L2_uc001vgz.1_Missense_Mutation_p.R82K	NM_001011724	NP_001011724	Q32P51	RA1L2_HUMAN	heterogeneous nuclear ribonucleoprotein A1-like	82	Globular A domain.|RRM 1.				mRNA processing|mRNA transport|RNA splicing	cytoplasm|spliceosomal complex	nucleotide binding|RNA binding				0						GTGGATGGAAGAGTTGTGGAA	0.478000													5	52					0	0	1	0	0
C13orf34	79866	broad.mit.edu	37	13	73318687	73318687	+	Missense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr13:73318687G>C	uc001viv.1	+	7	618	c.499G>C	c.(499-501)GAA>CAA	p.E167Q	C13orf34_uc010thq.1_5'UTR|C13orf34_uc010aen.1_Missense_Mutation_p.E242Q|C13orf34_uc010thr.1_Missense_Mutation_p.E97Q|C13orf34_uc001viw.1_Missense_Mutation_p.E116Q	NM_024808	NP_079084	Q6PGQ7	BORA_HUMAN	aurora borealis	167					cell division|mitosis|regulation of mitosis|regulation of mitotic spindle organization|regulation of protein localization		protein kinase binding				0		Breast(118;0.0735)		GBM - Glioblastoma multiforme(99;0.000227)		TTTTAATTTAGAAAATATATT	0.294000													15	63					0	0	1	0	0
TBC1D4	9882	broad.mit.edu	37	13	75869023	75869023	+	Missense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr13:75869023G>C	uc001vjl.1	-	18	3630	c.3283C>G	c.(3283-3285)CAG>GAG	p.Q1095E	TBC1D4_uc010tht.1_Missense_Mutation_p.Q305E|TBC1D4_uc010thu.1_Missense_Mutation_p.Q252E|TBC1D4_uc010aer.2_Missense_Mutation_p.Q1087E|TBC1D4_uc010aes.2_Missense_Mutation_p.Q1032E	NM_014832	NP_055647	O60343	TBCD4_HUMAN	TBC1 domain family, member 4	1095	Rab-GAP TBC.					cytoplasm	Rab GTPase activator activity			ovary(4)|central_nervous_system(1)|skin(1)	6		Prostate(6;0.014)|Breast(118;0.0982)		GBM - Glioblastoma multiforme(99;0.0116)		AATGAAAACTGAGAGGCAAAC	0.388000													6	81					0	0	1	0	0
MYCBP2	23077	broad.mit.edu	37	13	77642713	77642713	+	Missense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr13:77642713C>G	uc001vkf.2	-	71	12135	c.12044G>C	c.(12043-12045)AGA>ACA	p.R4015T	MYCBP2_uc010aev.2_Missense_Mutation_p.R3419T|MYCBP2_uc001vke.2_Missense_Mutation_p.R632T	NM_015057	NP_055872	O75592	MYCB2_HUMAN	MYC binding protein 2	4015					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	ligase activity|protein binding|zinc ion binding			ovary(4)|breast(4)|skin(3)|lung(2)|pancreas(1)	14		Breast(118;0.212)|Acute lymphoblastic leukemia(28;0.22)		GBM - Glioblastoma multiforme(99;0.109)		TCTCTGGACTCTAGGAGAGGC	0.453000													3	41					0	0	1	0	0
RBM26	64062	broad.mit.edu	37	13	79916921	79916921	+	Missense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr13:79916921C>G	uc001vkz.2	-	17	2325	c.2311G>C	c.(2311-2313)GAT>CAT	p.D771H	RBM26_uc001vky.2_Missense_Mutation_p.D742H|RBM26_uc001vla.2_Missense_Mutation_p.D745H|RBM26_uc010tia.1_Missense_Mutation_p.D126H|RBM26_uc001vkx.2_Missense_Mutation_p.D481H	NM_022118	NP_071401	Q5T8P6	RBM26_HUMAN	RNA binding motif protein 26	769	Potential.				mRNA processing		nucleotide binding|protein binding|RNA binding|zinc ion binding			ovary(1)	1		Acute lymphoblastic leukemia(28;0.0279)		GBM - Glioblastoma multiforme(99;0.0188)		TCTGCTTTATCTTCAGACTTC	0.303000													27	77					0	0	1	0	0
SLITRK1	114798	broad.mit.edu	37	13	84454215	84454215	+	Silent	SNP	G	T	T	rs142639256		TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr13:84454215G>T	uc001vlk.2	-	1	2314	c.1428C>A	c.(1426-1428)CTC>CTA	p.L476L		NM_052910	NP_443142	Q96PX8	SLIK1_HUMAN	slit and trk like 1 protein precursor	476	Extracellular (Potential).|LRR 11.					integral to membrane				ovary(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	5	Medulloblastoma(90;0.18)	Breast(118;0.212)		GBM - Glioblastoma multiforme(99;0.07)		TGTTGAGAATGAGGATCCTCA	0.537000													17	57					0.000566183	0.000574232	1	1	0
ARHGEF7	8874	broad.mit.edu	37	13	111927125	111927125	+	Silent	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr13:111927125C>T	uc001vrs.2	+	12	1573	c.1323C>T	c.(1321-1323)TTC>TTT	p.F441F	ARHGEF7_uc001vrr.2_Silent_p.F420F|ARHGEF7_uc001vrt.2_Silent_p.F391F|ARHGEF7_uc010tjn.1_RNA|ARHGEF7_uc001vru.1_Silent_p.F263F|ARHGEF7_uc001vrv.3_Silent_p.F263F|ARHGEF7_uc001vrw.3_Silent_p.F263F|ARHGEF7_uc001vrx.3_Silent_p.F263F|ARHGEF7_uc010tjo.1_Silent_p.F338F|ARHGEF7_uc010tjp.1_Silent_p.F185F|ARHGEF7_uc010agn.1_Silent_p.F185F	NM_001113511	NP_001106983	Q14155	ARHG7_HUMAN	PAK-interacting exchange factor beta isoform c	441	DH.				apoptosis|epidermal growth factor receptor signaling pathway|induction of apoptosis by extracellular signals|negative regulation of epidermal growth factor receptor signaling pathway|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol	protein binding|Rho guanyl-nucleotide exchange factor activity			ovary(2)|skin(2)|pancreas(1)|lung(1)|kidney(1)	7	all_lung(23;3.96e-05)|Lung NSC(43;0.00156)|Lung SC(71;0.0753)|all_neural(89;0.0804)|Medulloblastoma(90;0.163)		BRCA - Breast invasive adenocarcinoma(86;0.188)			TGGCTGCCTTCAAAAACCTTT	0.303000													23	46					0	0	1	0	0
ATP11A	23250	broad.mit.edu	37	13	113514622	113514622	+	Missense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr13:113514622C>G	uc001vsi.3	+	24	2837	c.2749C>G	c.(2749-2751)CTG>GTG	p.L917V	ATP11A_uc001vsj.3_Missense_Mutation_p.L917V|ATP11A_uc001vsm.1_Missense_Mutation_p.L793V|ATP11A_uc010ago.2_Intron	NM_015205	NP_056020	P98196	AT11A_HUMAN	ATPase, class VI, type 11A isoform a	917	Helical; (Potential).				ATP biosynthetic process	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|magnesium ion binding|phospholipid-translocating ATPase activity			large_intestine(2)|ovary(2)	4	all_lung(23;0.000374)|Lung NSC(43;0.0107)|Lung SC(71;0.0753)|all_neural(89;0.0804)|Hepatocellular(20;0.0877)|Medulloblastoma(90;0.163)	all_lung(25;0.134)|all_epithelial(44;0.141)				CACCGCGTATCTGACCCTCTA	0.463000													39	158					0	0	1	0	0
MCF2L	23263	broad.mit.edu	37	13	113742677	113742677	+	Missense_Mutation	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr13:113742677G>A	uc001vsu.2	+	24	2918	c.2896G>A	c.(2896-2898)GAA>AAA	p.E966K	MCF2L_uc001vsq.2_Missense_Mutation_p.E966K|MCF2L_uc010tjr.1_Missense_Mutation_p.E909K|MCF2L_uc001vsr.2_Missense_Mutation_p.E913K|MCF2L_uc001vss.3_Missense_Mutation_p.E907K|MCF2L_uc010tjs.1_Missense_Mutation_p.E907K	NM_001112732	NP_001106203	O15068	MCF2L_HUMAN	MCF.2 cell line derived transforming	939	PH.				apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|plasma membrane	Rho guanyl-nucleotide exchange factor activity			ovary(1)|kidney(1)	2	all_lung(23;0.000374)|Lung NSC(43;0.0107)|Lung SC(71;0.0753)|all_neural(89;0.0804)|Hepatocellular(20;0.0877)|Medulloblastoma(90;0.163)	all_cancers(25;0.118)|all_lung(25;0.0368)|all_epithelial(44;0.0396)|Lung NSC(25;0.129)|Breast(118;0.188)				GTGGGTGAATGAAATTCGGAA	0.542000													25	128					0	0	1	0	0
Unknown	0	broad.mit.edu	37	14	19856846	19856846	+	RNA	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr14:19856846C>T	uc001vvq.1	-	5		c.684G>A								Homo sapiens cDNA FLJ12852 fis, clone NT2RP2003445.																		TACCTGCTCTCATGTCATCTA	0.333000													6	37					0	0	1	0	0
PNP	4860	broad.mit.edu	37	14	20944590	20944590	+	Nonsense_Mutation	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr14:20944590C>T	uc001vxo.3	+	6	842	c.700C>T	c.(700-702)CGA>TGA	p.R234*	PNP_uc001vxn.3_Nonsense_Mutation_p.R105*	NM_000270	NP_000261	P00491	PNPH_HUMAN	nucleoside phosphorylase	234			R -> P (in PNPD).		immune response|inosine catabolic process|interleukin-2 secretion|NAD biosynthesis via nicotinamide riboside salvage pathway|nicotinamide riboside catabolic process|positive regulation of alpha-beta T cell differentiation|positive regulation of T cell proliferation|purine base metabolic process|purine nucleotide catabolic process|purine-containing compound salvage|response to drug|urate biosynthetic process	cytoskeleton|cytosol	drug binding|nucleoside binding|phosphate binding|purine base binding|purine-nucleoside phosphorylase activity			ovary(2)	2					Aciclovir(DB00787)|Cladribine(DB00242)|Mercaptopurine(DB01033)	CTGTGGACTTCGAGTCTTTGG	0.448000													35	98					0	0	1	0	0
ZNF219	51222	broad.mit.edu	37	14	21559617	21559617	+	Missense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr14:21559617G>C	uc001vzr.2	-	4	1938	c.1517C>G	c.(1516-1518)TCT>TGT	p.S506C	ZNF219_uc001vzs.2_Missense_Mutation_p.S506C|ZNF219_uc010aik.1_Missense_Mutation_p.S506C	NM_016423	NP_057507	Q9P2Y4	ZN219_HUMAN	zinc finger protein 219	506	C2H2-type 6.				negative regulation of transcription, DNA-dependent	integral to membrane|nucleus	DNA binding|histamine receptor activity|protein binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			central_nervous_system(1)	1	all_cancers(95;0.00185)		OV - Ovarian serous cystadenocarcinoma(11;9.86e-11)|Epithelial(56;1.27e-08)|all cancers(55;6.06e-08)	GBM - Glioblastoma multiforme(265;0.0191)		TGAGCGGAAAGATTTTCCGCA	0.612000													4	283					0	0	1	0	0
CHD8	57680	broad.mit.edu	37	14	21868704	21868704	+	Missense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr14:21868704C>G	uc001was.1	-	23	3695	c.3601G>C	c.(3601-3603)GAG>CAG	p.E1201Q	CHD8_uc001war.1_Missense_Mutation_p.E1097Q|CHD8_uc001wav.1_Missense_Mutation_p.E643Q	NM_020920	NP_065971	Q9HCK8	CHD8_HUMAN	chromodomain helicase DNA binding protein 8	1480					ATP-dependent chromatin remodeling|canonical Wnt receptor signaling pathway|negative regulation of transcription, DNA-dependent|negative regulation of Wnt receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter|positive regulation of transcription from RNA polymerase III promoter|transcription, DNA-dependent	MLL1 complex	ATP binding|beta-catenin binding|DNA binding|DNA helicase activity|DNA-dependent ATPase activity|methylated histone residue binding|p53 binding			ovary(6)|upper_aerodigestive_tract(1)|large_intestine(1)|breast(1)|skin(1)	10	all_cancers(95;0.00121)		Epithelial(56;2.55e-06)|all cancers(55;1.73e-05)	GBM - Glioblastoma multiforme(265;0.00424)		CAAATGGTCTCCACATCTCGT	0.418000													3	36					0	0	1	0	0
CHD8	57680	broad.mit.edu	37	14	21870148	21870148	+	Missense_Mutation	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr14:21870148C>T	uc001was.1	-	20	3287	c.3193G>A	c.(3193-3195)GAA>AAA	p.E1065K	CHD8_uc001war.1_Missense_Mutation_p.E961K|CHD8_uc001wav.1_Missense_Mutation_p.E507K	NM_020920	NP_065971	Q9HCK8	CHD8_HUMAN	chromodomain helicase DNA binding protein 8	1344					ATP-dependent chromatin remodeling|canonical Wnt receptor signaling pathway|negative regulation of transcription, DNA-dependent|negative regulation of Wnt receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter|positive regulation of transcription from RNA polymerase III promoter|transcription, DNA-dependent	MLL1 complex	ATP binding|beta-catenin binding|DNA binding|DNA helicase activity|DNA-dependent ATPase activity|methylated histone residue binding|p53 binding			ovary(6)|upper_aerodigestive_tract(1)|large_intestine(1)|breast(1)|skin(1)	10	all_cancers(95;0.00121)		Epithelial(56;2.55e-06)|all cancers(55;1.73e-05)	GBM - Glioblastoma multiforme(265;0.00424)		CCTTCAGATTCAATGGTGATG	0.418000													34	131					0	0	1	0	0
CHD8	57680	broad.mit.edu	37	14	21870187	21870187	+	Missense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr14:21870187C>G	uc001was.1	-	20	3248	c.3154G>C	c.(3154-3156)GAC>CAC	p.D1052H	CHD8_uc001war.1_Missense_Mutation_p.D948H|CHD8_uc001wav.1_Missense_Mutation_p.D494H	NM_020920	NP_065971	Q9HCK8	CHD8_HUMAN	chromodomain helicase DNA binding protein 8	1331					ATP-dependent chromatin remodeling|canonical Wnt receptor signaling pathway|negative regulation of transcription, DNA-dependent|negative regulation of Wnt receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter|positive regulation of transcription from RNA polymerase III promoter|transcription, DNA-dependent	MLL1 complex	ATP binding|beta-catenin binding|DNA binding|DNA helicase activity|DNA-dependent ATPase activity|methylated histone residue binding|p53 binding			ovary(6)|upper_aerodigestive_tract(1)|large_intestine(1)|breast(1)|skin(1)	10	all_cancers(95;0.00121)		Epithelial(56;2.55e-06)|all cancers(55;1.73e-05)	GBM - Glioblastoma multiforme(265;0.00424)		AAGATCTGGTCAATGTCCTCT	0.418000													26	120					0	0	1	0	0
HAUS4	54930	broad.mit.edu	37	14	23421548	23421548	+	Missense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr14:23421548C>G	uc001whp.2	-	3	350	c.319G>C	c.(319-321)GAG>CAG	p.E107Q	HAUS4_uc001who.2_RNA|HAUS4_uc001whq.2_Missense_Mutation_p.E107Q|HAUS4_uc001whr.2_Missense_Mutation_p.E107Q|HAUS4_uc001whs.2_Missense_Mutation_p.E107Q|HAUS4_uc001wht.2_Missense_Mutation_p.E107Q|HAUS4_uc001whu.2_Missense_Mutation_p.E107Q|HAUS4_uc001whv.2_5'UTR|HAUS4_uc001whw.2_Missense_Mutation_p.E107Q|HAUS4_uc001whx.2_Missense_Mutation_p.E107Q	NM_017815	NP_060285	Q9H6D7	HAUS4_HUMAN	HAUS augmin-like complex, subunit 4	107					cell division|centrosome organization|mitosis|spindle assembly	centrosome|HAUS complex|microtubule|spindle				ovary(1)	1						TTTTTGTCCTCAGAAGTTACA	0.239000													5	187					0	0	1	0	0
SLC22A17	51310	broad.mit.edu	37	14	23821025	23821025	+	Missense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr14:23821025C>G	uc001wjl.2	-	2	363	c.307G>C	c.(307-309)GAG>CAG	p.E103Q	SLC22A17_uc010akk.2_5'UTR|SLC22A17_uc001wjn.2_Intron|SLC22A17_uc001wjm.2_Missense_Mutation_p.E103Q|SLC22A17_uc010akl.1_Missense_Mutation_p.E103Q	NM_020372	NP_065105	Q8WUG5	S22AH_HUMAN	solute carrier family 22, member 17 isoform a	103	Helical; (Potential).			E -> G (in Ref. 1; ABG45942).	siderophore transport	integral to organelle membrane|integral to plasma membrane|vacuolar membrane	transmembrane receptor activity|transmembrane transporter activity				0	all_cancers(95;7.12e-06)			GBM - Glioblastoma multiforme(265;0.00643)		AGGATCTGCTCCAGGATCACC	0.657000													12	70					0	0	1	0	0
IL25	64806	broad.mit.edu	37	14	23844999	23844999	+	Silent	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr14:23844999G>A	uc001wjr.2	+	2	754	c.444G>A	c.(442-444)GAG>GAA	p.E148E	IL25_uc001wjq.2_Silent_p.E132E|CMTM5_uc001wjs.2_5'Flank|CMTM5_uc001wjt.2_5'Flank|CMTM5_uc010akm.2_5'Flank|CMTM5_uc010akn.2_5'Flank|CMTM5_uc001wju.2_5'Flank|CMTM5_uc010ako.2_5'Flank	NM_022789	NP_073626	Q9H293	IL25_HUMAN	interleukin 25 isoform 1 precursor	148					inflammatory response	extracellular space|membrane	cytokine activity|interleukin-17E receptor binding			ovary(1)	1	all_cancers(95;2e-05)			GBM - Glioblastoma multiforme(265;0.00665)|READ - Rectum adenocarcinoma(4;0.0276)|Colorectal(4;0.0396)		GCCATGGCGAGAAGGGCACCC	0.637000													24	85					0	0	1	0	0
LRRC16B	90668	broad.mit.edu	37	14	24522998	24522998	+	Missense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr14:24522998G>C	uc001wlj.2	+	2	278	c.121G>C	c.(121-123)GAG>CAG	p.E41Q		NM_138360	NP_612369	Q8ND23	LR16B_HUMAN	leucine rich repeat containing 16B	41										ovary(2)|breast(2)|pancreas(1)	5				GBM - Glioblastoma multiforme(265;0.019)		CAAGAAGTTTGAGGACCGAGT	0.632000													8	22					0	0	1	0	0
DCAF11	80344	broad.mit.edu	37	14	24588935	24588935	+	Missense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr14:24588935G>C	uc001wlv.2	+	11	1202	c.922G>C	c.(922-924)GAT>CAT	p.D308H	DCAF11_uc001wlw.2_Missense_Mutation_p.D308H|DCAF11_uc001wlz.2_Missense_Mutation_p.D208H|DCAF11_uc001wly.2_Missense_Mutation_p.D264H|DCAF11_uc001wme.2_Missense_Mutation_p.D268H|DCAF11_uc010tny.1_Missense_Mutation_p.D175H|DCAF11_uc001wmd.2_Missense_Mutation_p.D308H|DCAF11_uc001wmc.2_Missense_Mutation_p.D208H|DCAF11_uc001wmb.3_Missense_Mutation_p.D282H|DCAF11_uc001wma.3_Missense_Mutation_p.D308H	NM_001163484	NP_001156956	Q8TEB1	DCA11_HUMAN	DDB1 and CUL4 associated factor 11 isoform 1	308	WD 4.					CUL4 RING ubiquitin ligase complex	protein binding				0						GTCCCATGAGGATGATGTGAA	0.488000													19	59					0	0	1	0	0
CHMP4A	29082	broad.mit.edu	37	14	24684923	24684923	+	5'Flank	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr14:24684923C>G	uc001wni.2	-						TM9SF1_uc010tob.1_5'Flank|CHMP4A_uc010toc.1_5'Flank|CHMP4A_uc001wnj.2_5'UTR|MDP1_uc001wnk.1_Intron|CHMP4A_uc001wnm.1_Intron|MDP1_uc001wnl.1_Intron	NM_014169	NP_054888	Q9BY43	CHM4A_HUMAN	chromatin modifying protein 4A						cellular membrane organization|endosome transport|protein transport	cytoplasmic vesicle membrane|cytosol|late endosome membrane	lipid binding|protein binding			ovary(2)	2				GBM - Glioblastoma multiforme(265;0.0181)		CGCCCCCAGTCTTCCCTGTCC	0.597000											OREG0022620	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	4	315					0	0	1	0	0
DHRS1	115817	broad.mit.edu	37	14	24765737	24765737	+	Missense_Mutation	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr14:24765737C>T	uc001woj.1	-	4	621	c.352G>A	c.(352-354)GAT>AAT	p.D118N	DHRS1_uc010aln.1_5'Flank|DHRS1_uc001wok.2_Missense_Mutation_p.D118N	NM_138452	NP_612461	Q96LJ7	DHRS1_HUMAN	dehydrogenase/reductase (SDR family) member 1	118						endoplasmic reticulum	binding|oxidoreductase activity				0				GBM - Glioblastoma multiforme(265;2.81e-08)|OV - Ovarian serous cystadenocarcinoma(311;0.0442)		TTGTTGATATCATCCCACATG	0.552000											OREG0022622	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	25	100					0	0	1	0	0
COCH	1690	broad.mit.edu	37	14	31358950	31358950	+	Missense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr14:31358950G>C	uc001wqr.2	+	12	1686	c.1606G>C	c.(1606-1608)GAT>CAT	p.D536H	COCH_uc001wqp.2_Missense_Mutation_p.D536H|COCH_uc001wqq.3_Intron|uc001wqs.2_RNA|COCH_uc001wqt.1_Missense_Mutation_p.D387H	NM_004086	NP_004077	O43405	COCH_HUMAN	cochlin precursor	536	VWFA 2.				sensory perception of sound	proteinaceous extracellular matrix				pancreas(1)|central_nervous_system(1)|skin(1)	3	Hepatocellular(127;0.0877)|Breast(36;0.148)		LUAD - Lung adenocarcinoma(48;0.00192)|Lung(238;0.0119)|BRCA - Breast invasive adenocarcinoma(188;0.0805)	GBM - Glioblastoma multiforme(265;0.00645)		AATTGTTTCTGATGTCATCAG	0.398000													21	60					0	0	1	0	0
AKAP6	9472	broad.mit.edu	37	14	33015502	33015502	+	Missense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr14:33015502C>G	uc001wrq.2	+	4	1813	c.1643C>G	c.(1642-1644)TCT>TGT	p.S548C	AKAP6_uc010aml.2_Missense_Mutation_p.S545C	NM_004274	NP_004265	Q13023	AKAP6_HUMAN	A-kinase anchor protein 6	548					protein targeting	calcium channel complex|nuclear membrane|sarcoplasmic reticulum	protein kinase A binding|receptor binding			breast(6)|ovary(5)|lung(4)|skin(3)|large_intestine(2)|pancreas(1)	21	Breast(36;0.0388)|Prostate(35;0.15)		LUAD - Lung adenocarcinoma(48;0.00107)|Lung(238;0.00677)|STAD - Stomach adenocarcinoma(7;0.116)	GBM - Glioblastoma multiforme(265;0.019)		CAAACAAATTCTGCTTCCACA	0.438000													22	56					0	0	1	0	0
RALGAPA1	253959	broad.mit.edu	37	14	36125063	36125063	+	Missense_Mutation	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr14:36125063G>A	uc001wti.2	-	28	4319	c.3928C>T	c.(3928-3930)CAT>TAT	p.H1310Y	RALGAPA1_uc010amp.2_RNA|RALGAPA1_uc001wtj.2_Missense_Mutation_p.H1310Y|RALGAPA1_uc010tpv.1_Missense_Mutation_p.H1323Y|RALGAPA1_uc010tpw.1_Missense_Mutation_p.H1357Y	NM_014990	NP_055805	Q6GYQ0	RGPA1_HUMAN	Ral GTPase activating protein, alpha subunit 1	1310					activation of Ral GTPase activity	cytosol|mitochondrion|nucleus	protein heterodimerization activity|Ral GTPase activator activity			ovary(3)|breast(1)	4						TGAGGATGATGAGACTCATGG	0.333000													47	183					0	0	1	0	0
CLEC14A	161198	broad.mit.edu	37	14	38724388	38724388	+	Silent	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr14:38724388C>T	uc001wum.1	-	1	1187	c.840G>A	c.(838-840)GGG>GGA	p.G280G		NM_175060	NP_778230	Q86T13	CLC14_HUMAN	C-type lectin domain family 14, member A	280	Extracellular (Potential).|EGF-like.					integral to membrane	sugar binding			ovary(3)|skin(1)	4	Hepatocellular(127;0.213)|Esophageal squamous(585;0.22)		Lung(238;3.93e-06)|LUAD - Lung adenocarcinoma(48;2.62e-05)|Epithelial(34;0.187)	GBM - Glioblastoma multiforme(112;0.00439)		GGCCGTCCTTCCCCAGCTCGA	0.677000													30	136					0	0	1	0	0
MIA2	117153	broad.mit.edu	37	14	39716772	39716772	+	Missense_Mutation	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr14:39716772G>A	uc001wux.2	+	4	1188	c.994G>A	c.(994-996)GAA>AAA	p.E332K	MIA2_uc010amy.1_Missense_Mutation_p.E263K	NM_054024	NP_473365	Q96PC5	MIA2_HUMAN	melanoma inhibitory activity 2	332						extracellular region				ovary(1)|breast(1)	2	Hepatocellular(127;0.213)		LUAD - Lung adenocarcinoma(48;0.000565)|Lung(238;0.000711)	GBM - Glioblastoma multiforme(112;0.0216)		ATTAATAGCTGAAGAAAGCAA	0.378000													17	77					0	0	1	0	0
LRFN5	145581	broad.mit.edu	37	14	42361085	42361085	+	Nonsense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr14:42361085C>G	uc001wvm.2	+	4	3216	c.2018C>G	c.(2017-2019)TCA>TGA	p.S673*	LRFN5_uc010ana.2_Intron	NM_152447	NP_689660	Q96NI6	LRFN5_HUMAN	leucine rich repeat and fibronectin type III	673	Cytoplasmic (Potential).					integral to membrane				ovary(5)|pancreas(2)|central_nervous_system(1)	8			LUAD - Lung adenocarcinoma(50;0.0223)|Lung(238;0.0728)	GBM - Glioblastoma multiforme(112;0.00847)		AGGAACAACTCAACTGCCTTG	0.453000										HNSCC(30;0.082)			12	49					0	0	1	0	0
PRPF39	55015	broad.mit.edu	37	14	45564749	45564749	+	Nonsense_Mutation	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr14:45564749C>T	uc001wvz.3	+	2	477	c.307C>T	c.(307-309)CAA>TAA	p.Q103*	PRPF39_uc001wvy.3_5'UTR|PRPF39_uc010and.2_5'UTR	NM_017922	NP_060392	Q86UA1	PRP39_HUMAN	PRP39 pre-mRNA processing factor 39 homolog	103					mRNA processing|RNA splicing	nucleus	binding			ovary(1)|breast(1)	2						ATATTTGCTTCAATATGTAGA	0.313000													5	9					0	0	1	0	0
MGAT2	4247	broad.mit.edu	37	14	50088567	50088567	+	Missense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr14:50088567G>C	uc001wwr.2	+	1	1079	c.581G>C	c.(580-582)AGA>ACA	p.R194T	SDCCAG1_uc010anj.1_Intron|RPL36AL_uc001wwq.1_5'Flank	NM_002408	NP_002399	Q10469	MGAT2_HUMAN	mannosyl (alpha-1,6-)-glycoprotein	194	Lumenal (Potential).				oligosaccharide biosynthetic process|post-translational protein modification|protein N-linked glycosylation via asparagine	Golgi membrane|Golgi stack|integral to membrane|membrane fraction	alpha-1,6-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity				0	all_epithelial(31;0.0021)|Breast(41;0.0124)					AGTGACCCTAGAGATTGTCCC	0.498000													51	149					0	0	1	0	0
ATL1	51062	broad.mit.edu	37	14	51054634	51054634	+	Silent	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr14:51054634C>G	uc001wyf.3	+	2	361	c.120C>G	c.(118-120)GTC>GTG	p.V40V	ATL1_uc001wyd.3_Silent_p.V40V|ATL1_uc001wye.3_Silent_p.V40V	NM_015915	NP_056999	Q8WXF7	ATLA1_HUMAN	atlastin GTPase 1 isoform a	40	Cytoplasmic.				axonogenesis|cell death|endoplasmic reticulum organization|protein homooligomerization	axon|endoplasmic reticulum membrane|Golgi cis cisterna|Golgi membrane|integral to membrane|microsome	GTP binding|GTPase activity|identical protein binding			skin(3)|central_nervous_system(1)	4						TCCTCATTGTCAAAGATGACC	0.458000													3	217					0	0	1	0	0
ATL1	51062	broad.mit.edu	37	14	51054702	51054702	+	Missense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr14:51054702G>C	uc001wyf.3	+	2	429	c.188G>C	c.(187-189)AGA>ACA	p.R63T	ATL1_uc001wyd.3_Missense_Mutation_p.R63T|ATL1_uc001wye.3_Missense_Mutation_p.R63T	NM_015915	NP_056999	Q8WXF7	ATLA1_HUMAN	atlastin GTPase 1 isoform a	63	Cytoplasmic.				axonogenesis|cell death|endoplasmic reticulum organization|protein homooligomerization	axon|endoplasmic reticulum membrane|Golgi cis cisterna|Golgi membrane|integral to membrane|microsome	GTP binding|GTPase activity|identical protein binding			skin(3)|central_nervous_system(1)	4						GAGGCTGTCAGAGACAAGGAG	0.428000													7	248					0	0	1	0	0
NIN	51199	broad.mit.edu	37	14	51192747	51192747	+	Missense_Mutation	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr14:51192747C>T	uc001wym.2	-	30	6307	c.6116G>A	c.(6115-6117)CGA>CAA	p.R2039Q	NIN_uc001wyi.2_Missense_Mutation_p.R2039Q|NIN_uc001wyj.2_RNA|NIN_uc001wyk.2_Missense_Mutation_p.R1326Q|NIN_uc010tqp.1_Missense_Mutation_p.R2045Q	NM_182946	NP_891991	Q8N4C6	NIN_HUMAN	ninein isoform 5	2039	Potential.				centrosome localization	centrosome|microtubule	calcium ion binding|GTP binding|protein binding			skin(3)|ovary(1)|kidney(1)|central_nervous_system(1)	6	all_epithelial(31;0.00244)|Breast(41;0.127)					TTCTATCATTCGTTCCTCCAT	0.393000			T	PDGFRB	MPD								28	86					0	0	1	0	0
PYGL	5836	broad.mit.edu	37	14	51404508	51404508	+	Silent	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr14:51404508C>T	uc001wyu.2	-	2	418	c.291G>A	c.(289-291)CAG>CAA	p.Q97Q	PYGL_uc010tqq.1_Intron|PYGL_uc001wyv.2_5'UTR|PYGL_uc001wyw.3_Silent_p.Q97Q	NM_002863	NP_002854	P06737	PYGL_HUMAN	liver glycogen phosphorylase isoform 1	97					glucose homeostasis|glucose metabolic process|glycogen catabolic process	cytosol|soluble fraction	AMP binding|ATP binding|bile acid binding|drug binding|glucose binding|glycogen phosphorylase activity|protein homodimerization activity|purine base binding|pyridoxal phosphate binding			skin(1)	1	all_epithelial(31;0.00825)|Breast(41;0.148)				Adenosine monophosphate(DB00131)|Pyridoxal Phosphate(DB00114)|Riboflavin(DB00140)	TCATGGTGTTCTGTAATGTTC	0.398000													28	134					0	0	1	0	0
TXNDC16	57544	broad.mit.edu	37	14	52986004	52986004	+	Missense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr14:52986004G>C	uc001wzs.2	-	7	849	c.400C>G	c.(400-402)CTT>GTT	p.L134V	TXNDC16_uc010tqu.1_Intron|TXNDC16_uc010aoe.2_RNA	NM_020784	NP_065835	Q9P2K2	TXD16_HUMAN	thioredoxin domain containing 16 isoform 1	134					cell redox homeostasis	extracellular region					0	Breast(41;0.0716)					TCACTAAAAAGAAGAGCACTG	0.294000													9	68					0	0	1	0	0
CNIH	10175	broad.mit.edu	37	14	54903140	54903140	+	Missense_Mutation	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr14:54903140C>T	uc001xat.1	-	2	200	c.97G>A	c.(97-99)GAG>AAG	p.E33K	CNIH_uc001xav.1_Missense_Mutation_p.E33K	NM_005776	NP_005767	O95406	CNIH_HUMAN	cornichon-like	33	Lumenal (Potential).				immune response|intracellular signal transduction|vesicle-mediated transport	endoplasmic reticulum membrane|Golgi membrane|integral to membrane					0				GBM - Glioblastoma multiforme(112;0.00341)		GTCTTCAGCTCATCAAATGCT	0.294000													19	69					0	0	1	0	0
SAMD4A	23034	broad.mit.edu	37	14	55168941	55168941	+	Missense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr14:55168941G>C	uc001xbb.2	+	2	356	c.355G>C	c.(355-357)GAG>CAG	p.E119Q	SAMD4A_uc001xba.2_Missense_Mutation_p.E119Q|SAMD4A_uc001xbc.2_Missense_Mutation_p.E119Q|SAMD4A_uc001xbf.1_RNA|SAMD4A_uc001xbe.2_Missense_Mutation_p.E19Q	NM_015589	NP_056404	Q9UPU9	SMAG1_HUMAN	sterile alpha motif domain containing 4 isoform	120					positive regulation of translation	cell junction|cytoplasm|dendrite|synapse|synaptosome	translation repressor activity				0						CCAGCACATTGAGGAGAGCAG	0.493000													18	55					0	0	1	0	0
DLGAP5	9787	broad.mit.edu	37	14	55621364	55621364	+	Silent	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr14:55621364C>T	uc001xbs.2	-	15	2251	c.2034G>A	c.(2032-2034)AAG>AAA	p.K678K	DLGAP5_uc001xbt.2_Silent_p.K678K	NM_014750	NP_055565	Q15398	DLGP5_HUMAN	discs large homolog 7 isoform a	678					cell proliferation|cell-cell signaling|mitotic chromosome movement towards spindle pole|positive regulation of mitotic metaphase/anaphase transition	nucleus|spindle pole centrosome	phosphoprotein phosphatase activity|protein binding			ovary(1)|skin(1)	2						AAAACAAAGTCTTCTTCACAT	0.353000													4	147					0	0	1	0	0
C14orf105	55195	broad.mit.edu	37	14	57938127	57938127	+	Silent	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr14:57938127C>T	uc001xcy.2	-	6	980	c.837G>A	c.(835-837)GTG>GTA	p.V279V	C14orf105_uc010trl.1_Silent_p.V319V|C14orf105_uc010trm.1_Silent_p.V190V|C14orf105_uc010trn.1_Silent_p.V190V|C14orf105_uc001xcz.2_Silent_p.V278V	NM_018168	NP_060638	Q9NVL8	CN105_HUMAN	hypothetical protein LOC55195	279											0						TCCTGGTCCTCACCAGTGCTC	0.458000													36	74					0	0	1	0	0
ARID4A	5926	broad.mit.edu	37	14	58832749	58832749	+	Silent	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr14:58832749C>T	uc001xdp.2	+	22	3578	c.3324C>T	c.(3322-3324)AGC>AGT	p.S1108S	ARID4A_uc001xdo.2_Silent_p.S1108S|ARID4A_uc001xdq.2_Intron	NM_002892	NP_002883	P29374	ARI4A_HUMAN	retinoblastoma-binding protein 1 isoform I	1108					negative regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter	transcriptional repressor complex	DNA binding|sequence-specific DNA binding transcription factor activity			ovary(3)|skin(2)|lung(1)	6						TAGGACAAAGCAGTGATAGTG	0.274000													52	127					0	0	1	0	0
DAAM1	23002	broad.mit.edu	37	14	59782054	59782054	+	Silent	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr14:59782054C>G	uc001xdz.1	+	4	455	c.330C>G	c.(328-330)CTC>CTG	p.L110L	DAAM1_uc001xea.1_Silent_p.L110L|DAAM1_uc001xeb.1_Silent_p.L110L	NM_014992	NP_055807	Q9Y4D1	DAAM1_HUMAN	dishevelled-associated activator of	110	GBD/FH3.				actin cytoskeleton organization	cytoplasm|plasma membrane	actin binding|Rho GTPase binding			ovary(1)	1				OV - Ovarian serous cystadenocarcinoma(108;0.165)		TTGATCAGCTCAATTCCATGG	0.383000													45	141					0	0	1	0	0
DAAM1	23002	broad.mit.edu	37	14	59821958	59821958	+	Missense_Mutation	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr14:59821958G>A	uc001xdz.1	+	21	2587	c.2462G>A	c.(2461-2463)GGA>GAA	p.G821E	DAAM1_uc001xea.1_Missense_Mutation_p.G811E|DAAM1_uc001xec.1_RNA	NM_014992	NP_055807	Q9Y4D1	DAAM1_HUMAN	dishevelled-associated activator of	821	FH2.				actin cytoskeleton organization	cytoplasm|plasma membrane	actin binding|Rho GTPase binding			ovary(1)	1				OV - Ovarian serous cystadenocarcinoma(108;0.165)		TTGGCATTTGGAAATTATATG	0.388000													38	159					0	0	1	0	0
PPM1A	5494	broad.mit.edu	37	14	60749624	60749624	+	Missense_Mutation	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr14:60749624C>T	uc010apn.2	+	3	605	c.203C>T	c.(202-204)GCC>GTC	p.A68V	PPM1A_uc001xew.3_Missense_Mutation_p.A141V|PPM1A_uc001xex.3_Missense_Mutation_p.A68V|PPM1A_uc001xey.3_Missense_Mutation_p.A68V	NM_021003	NP_066283	P35813	PPM1A_HUMAN	protein phosphatase 1A isoform 1	68					cell cycle arrest|insulin receptor signaling pathway|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of transcription, DNA-dependent|positive regulation of Wnt receptor signaling pathway|protein dephosphorylation|Wnt receptor signaling pathway	cytosol|nucleus|protein serine/threonine phosphatase complex	magnesium ion binding|manganese ion binding|protein serine/threonine phosphatase activity|signal transducer activity			skin(1)	1				OV - Ovarian serous cystadenocarcinoma(108;0.046)		TCTCAGGTTGCCAAATACTGC	0.448000													16	308					0	0	1	0	0
SYNE2	23224	broad.mit.edu	37	14	64518990	64518990	+	Missense_Mutation	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr14:64518990G>A	uc001xgm.2	+	48	8589	c.8359G>A	c.(8359-8361)GAA>AAA	p.E2787K	SYNE2_uc001xgl.2_Missense_Mutation_p.E2787K	NM_015180	NP_055995	Q8WXH0	SYNE2_HUMAN	spectrin repeat containing, nuclear envelope 2	2787	Cytoplasmic (Potential).				centrosome localization|cytoskeletal anchoring at nuclear membrane|nuclear migration along microfilament|positive regulation of cell migration	cytoskeleton|filopodium membrane|focal adhesion|integral to membrane|lamellipodium membrane|mitochondrial part|nuclear outer membrane|nucleoplasm|sarcoplasmic reticulum membrane|SUN-KASH complex|Z disc	actin binding|protein binding			ovary(8)|breast(4)|central_nervous_system(1)|pancreas(1)	14				all cancers(60;0.00153)|OV - Ovarian serous cystadenocarcinoma(108;0.00444)|BRCA - Breast invasive adenocarcinoma(234;0.0681)		ATCGTTGGCTGAAGAGGTCAA	0.433000													37	124					0	0	1	0	0
SYNE2	23224	broad.mit.edu	37	14	64519002	64519002	+	Missense_Mutation	SNP	G	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr14:64519002G>T	uc001xgm.2	+	48	8601	c.8371G>T	c.(8371-8373)GAT>TAT	p.D2791Y	SYNE2_uc001xgl.2_Missense_Mutation_p.D2791Y	NM_015180	NP_055995	Q8WXH0	SYNE2_HUMAN	spectrin repeat containing, nuclear envelope 2	2791	Cytoplasmic (Potential).				centrosome localization|cytoskeletal anchoring at nuclear membrane|nuclear migration along microfilament|positive regulation of cell migration	cytoskeleton|filopodium membrane|focal adhesion|integral to membrane|lamellipodium membrane|mitochondrial part|nuclear outer membrane|nucleoplasm|sarcoplasmic reticulum membrane|SUN-KASH complex|Z disc	actin binding|protein binding			ovary(8)|breast(4)|central_nervous_system(1)|pancreas(1)	14				all cancers(60;0.00153)|OV - Ovarian serous cystadenocarcinoma(108;0.00444)|BRCA - Breast invasive adenocarcinoma(234;0.0681)		AGAGGTCAAAGATAAGGTTCC	0.418000													34	110					4.3949e-29	4.60874e-29	1	1	0
SYNE2	23224	broad.mit.edu	37	14	64564841	64564841	+	Missense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr14:64564841G>C	uc001xgm.2	+	62	12513	c.12283G>C	c.(12283-12285)GAG>CAG	p.E4095Q	SYNE2_uc001xgl.2_Missense_Mutation_p.E4095Q|SYNE2_uc010apy.2_Missense_Mutation_p.E480Q|SYNE2_uc010apx.1_Missense_Mutation_p.E487Q|MIR548H-1_hsa-mir-548h-1|MI0006411_5'Flank|SYNE2_uc010apz.1_5'Flank	NM_015180	NP_055995	Q8WXH0	SYNE2_HUMAN	spectrin repeat containing, nuclear envelope 2	4095	Cytoplasmic (Potential).				centrosome localization|cytoskeletal anchoring at nuclear membrane|nuclear migration along microfilament|positive regulation of cell migration	cytoskeleton|filopodium membrane|focal adhesion|integral to membrane|lamellipodium membrane|mitochondrial part|nuclear outer membrane|nucleoplasm|sarcoplasmic reticulum membrane|SUN-KASH complex|Z disc	actin binding|protein binding			ovary(8)|breast(4)|central_nervous_system(1)|pancreas(1)	14				all cancers(60;0.00153)|OV - Ovarian serous cystadenocarcinoma(108;0.00444)|BRCA - Breast invasive adenocarcinoma(234;0.0681)		TGGAGTGGCAGAGAGGGATGC	0.498000													14	51					0	0	1	0	0
SYNE2	23224	broad.mit.edu	37	14	64565537	64565537	+	Missense_Mutation	SNP	G	A	A	rs145874555		TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr14:64565537G>A	uc001xgm.2	+	63	12609	c.12379G>A	c.(12379-12381)GAT>AAT	p.D4127N	SYNE2_uc001xgl.2_Missense_Mutation_p.D4127N|SYNE2_uc010apy.2_Missense_Mutation_p.D512N|SYNE2_uc010apx.1_Missense_Mutation_p.D519N|SYNE2_uc010apz.1_Missense_Mutation_p.D19N	NM_015180	NP_055995	Q8WXH0	SYNE2_HUMAN	spectrin repeat containing, nuclear envelope 2	4127	Cytoplasmic (Potential).				centrosome localization|cytoskeletal anchoring at nuclear membrane|nuclear migration along microfilament|positive regulation of cell migration	cytoskeleton|filopodium membrane|focal adhesion|integral to membrane|lamellipodium membrane|mitochondrial part|nuclear outer membrane|nucleoplasm|sarcoplasmic reticulum membrane|SUN-KASH complex|Z disc	actin binding|protein binding			ovary(8)|breast(4)|central_nervous_system(1)|pancreas(1)	14				all cancers(60;0.00153)|OV - Ovarian serous cystadenocarcinoma(108;0.00444)|BRCA - Breast invasive adenocarcinoma(234;0.0681)		CGTGAAGAGCGATGTAAGGGA	0.398000													4	28					0	0	1	0	0
SYNE2	23224	broad.mit.edu	37	14	64608744	64608744	+	Missense_Mutation	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr14:64608744G>A	uc001xgm.2	+	82	15474	c.15244G>A	c.(15244-15246)GAA>AAA	p.E5082K	SYNE2_uc001xgl.2_Missense_Mutation_p.E5082K|SYNE2_uc010apy.2_Missense_Mutation_p.E1467K|SYNE2_uc001xgn.2_Missense_Mutation_p.E44K|SYNE2_uc001xgo.2_RNA	NM_015180	NP_055995	Q8WXH0	SYNE2_HUMAN	spectrin repeat containing, nuclear envelope 2	5082	Spectrin 2.|Cytoplasmic (Potential).				centrosome localization|cytoskeletal anchoring at nuclear membrane|nuclear migration along microfilament|positive regulation of cell migration	cytoskeleton|filopodium membrane|focal adhesion|integral to membrane|lamellipodium membrane|mitochondrial part|nuclear outer membrane|nucleoplasm|sarcoplasmic reticulum membrane|SUN-KASH complex|Z disc	actin binding|protein binding			ovary(8)|breast(4)|central_nervous_system(1)|pancreas(1)	14				all cancers(60;0.00153)|OV - Ovarian serous cystadenocarcinoma(108;0.00444)|BRCA - Breast invasive adenocarcinoma(234;0.0681)		AACTTCAGATGAAGACTCCGT	0.383000													12	39					0	0	1	0	0
SYNE2	23224	broad.mit.edu	37	14	64610592	64610592	+	Missense_Mutation	SNP	A	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr14:64610592A>G	uc001xgm.2	+	83	15639	c.15409A>G	c.(15409-15411)AGA>GGA	p.R5137G	SYNE2_uc001xgl.2_Missense_Mutation_p.R5137G|SYNE2_uc010apy.2_Missense_Mutation_p.R1522G|SYNE2_uc001xgn.2_Missense_Mutation_p.R99G|SYNE2_uc001xgo.2_RNA	NM_015180	NP_055995	Q8WXH0	SYNE2_HUMAN	spectrin repeat containing, nuclear envelope 2	5137	Spectrin 2.|Cytoplasmic (Potential).				centrosome localization|cytoskeletal anchoring at nuclear membrane|nuclear migration along microfilament|positive regulation of cell migration	cytoskeleton|filopodium membrane|focal adhesion|integral to membrane|lamellipodium membrane|mitochondrial part|nuclear outer membrane|nucleoplasm|sarcoplasmic reticulum membrane|SUN-KASH complex|Z disc	actin binding|protein binding			ovary(8)|breast(4)|central_nervous_system(1)|pancreas(1)	14				all cancers(60;0.00153)|OV - Ovarian serous cystadenocarcinoma(108;0.00444)|BRCA - Breast invasive adenocarcinoma(234;0.0681)		GCGCTATGAAAGAACGGAGTT	0.463000													5	388					0	0	1	0	0
MPP5	64398	broad.mit.edu	37	14	67799667	67799667	+	Silent	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr14:67799667G>A	uc001xjc.2	+	15	2488	c.2022G>A	c.(2020-2022)CTG>CTA	p.L674L	MPP5_uc001xjd.2_Silent_p.L640L|ATP6V1D_uc001xje.2_Intron	NM_022474	NP_071919	Q8N3R9	MPP5_HUMAN	membrane protein, palmitoylated 5	674					tight junction assembly	cytoplasm|endomembrane system|tight junction	protein domain specific binding			ovary(1)	1				all cancers(60;0.000388)|OV - Ovarian serous cystadenocarcinoma(108;0.00762)|BRCA - Breast invasive adenocarcinoma(234;0.0106)		CCACTTGGCTGAGGTGAAAGA	0.438000													12	59					0	0	1	0	0
EIF2S1	1965	broad.mit.edu	37	14	67850119	67850119	+	Missense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr14:67850119G>C	uc001xjg.2	+	8	1051	c.910G>C	c.(910-912)GAT>CAT	p.D304H		NM_004094	NP_004085	P05198	IF2A_HUMAN	eukaryotic translation initiation factor 2,	304						cytosol|eukaryotic translation initiation factor 2 complex|polysome|stress granule	protein binding|ribosome binding|translation initiation factor activity			ovary(1)	1				all cancers(60;0.000683)|OV - Ovarian serous cystadenocarcinoma(108;0.00579)|BRCA - Breast invasive adenocarcinoma(234;0.00937)		GGATGGAGATGATGATGCAGA	0.463000													7	25					0	0	1	0	0
ZFYVE26	23503	broad.mit.edu	37	14	68257344	68257344	+	Silent	SNP	C	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr14:68257344C>A	uc001xka.2	-	15	2839	c.2700G>T	c.(2698-2700)CGG>CGT	p.R900R	ZFYVE26_uc010tsz.1_RNA|ZFYVE26_uc001xkc.3_Silent_p.R900R	NM_015346	NP_056161	Q68DK2	ZFY26_HUMAN	zinc finger, FYVE domain containing 26	900					cell cycle|cell death|cytokinesis|double-strand break repair via homologous recombination	centrosome|midbody	metal ion binding|phosphatidylinositol-3-phosphate binding|protein binding			ovary(9)|breast(2)	11				all cancers(60;0.000763)|OV - Ovarian serous cystadenocarcinoma(108;0.0011)|BRCA - Breast invasive adenocarcinoma(234;0.0115)		TGCCAGTTCTCCGAATGGTGC	0.552000													34	91					4.62619e-21	4.83658e-21	1	1	0
C14orf181	400223	broad.mit.edu	37	14	69262694	69262694	+	Silent	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr14:69262694C>G	uc001xkj.1	-	1	497	c.318G>C	c.(316-318)TCG>TCC	p.S106S	ZFP36L1_uc001xkh.1_5'Flank|ZFP36L1_uc001xki.1_5'Flank	NM_207442	NP_997325			hypothetical protein LOC400223												0				all cancers(60;0.002)|BRCA - Breast invasive adenocarcinoma(234;0.00204)|OV - Ovarian serous cystadenocarcinoma(108;0.0399)		GCAGGAAGGCCGAGGCGAGGC	0.766000													7	15					0	0	1	0	0
SIPA1L1	26037	broad.mit.edu	37	14	72055659	72055659	+	Missense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr14:72055659G>C	uc001xms.2	+	2	1418	c.1070G>C	c.(1069-1071)AGA>ACA	p.R357T	SIPA1L1_uc001xmt.2_Missense_Mutation_p.R357T|SIPA1L1_uc001xmu.2_Missense_Mutation_p.R357T|SIPA1L1_uc001xmv.2_Missense_Mutation_p.R357T	NM_015556	NP_056371	O43166	SI1L1_HUMAN	signal-induced proliferation-associated 1 like	357					actin cytoskeleton reorganization|activation of Rap GTPase activity|regulation of dendritic spine morphogenesis	cell junction|cytoplasm|dendritic spine|postsynaptic density|postsynaptic membrane|synaptosome	GTPase activator activity			ovary(3)|breast(1)	4				all cancers(60;0.00169)|BRCA - Breast invasive adenocarcinoma(234;0.00912)|OV - Ovarian serous cystadenocarcinoma(108;0.0109)		ATTAAGAGGAGAAACACCACC	0.483000													14	72					0	0	1	0	0
DPF3	8110	broad.mit.edu	37	14	73190406	73190406	+	Missense_Mutation	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr14:73190406C>T	uc001xnc.2	-	5	473	c.460G>A	c.(460-462)GAA>AAA	p.E154K	DPF3_uc001xnd.1_RNA|DPF3_uc001xnf.2_RNA|DPF3_uc010ari.1_Missense_Mutation_p.E154K|DPF3_uc010ttq.1_Missense_Mutation_p.E164K	NM_012074	NP_036206	Q92784	DPF3_HUMAN	D4, zinc and double PHD fingers, family 3	154					chromatin modification|nervous system development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nBAF complex	nucleic acid binding|zinc ion binding			ovary(1)	1				BRCA - Breast invasive adenocarcinoma(234;0.00649)|OV - Ovarian serous cystadenocarcinoma(108;0.0654)		TCATTCCCTTCTTCTACATTT	0.388000													39	153					0	0	1	0	0
FAM161B	145483	broad.mit.edu	37	14	74400994	74400994	+	Missense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr14:74400994G>C	uc001xpd.1	-	9	2015	c.1909C>G	c.(1909-1911)CAT>GAT	p.H637D		NM_152445	NP_689658			hypothetical protein LOC145483											ovary(1)	1						GGTGACTGATGAGACAGCTCC	0.423000													8	173					0	0	1	0	0
ABCD4	5826	broad.mit.edu	37	14	74756735	74756735	+	Missense_Mutation	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr14:74756735C>T	uc001xpr.2	-	13	1566	c.1414G>A	c.(1414-1416)GAG>AAG	p.E472K	ABCD4_uc001xps.2_Missense_Mutation_p.E313K|ABCD4_uc001xpt.2_Missense_Mutation_p.E313K|ABCD4_uc010tur.1_Missense_Mutation_p.E368K	NM_005050	NP_005041	O14678	ABCD4_HUMAN	ATP-binding cassette, sub-family D, member 4	472	ABC transporter.					ATP-binding cassette (ABC) transporter complex|integral to membrane|peroxisomal membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances			upper_aerodigestive_tract(2)|large_intestine(1)|ovary(1)	4				BRCA - Breast invasive adenocarcinoma(234;0.00153)		CTGACCTGCTCCCGAAGGGTC	0.602000											OREG0022800	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	32	82					0	0	1	0	0
YLPM1	56252	broad.mit.edu	37	14	75264371	75264371	+	Missense_Mutation	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr14:75264371G>A	uc001xqj.3	+	5	2495	c.2371G>A	c.(2371-2373)GAT>AAT	p.D791N	YLPM1_uc001xql.3_RNA	NM_019589	NP_062535	P49750	YLPM1_HUMAN	YLP motif containing 1	596					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nuclear speck				ovary(2)|pancreas(1)	3			KIRC - Kidney renal clear cell carcinoma(43;0.238)	BRCA - Breast invasive adenocarcinoma(234;0.00162)		AAATCGCCCCGATGGGCCAAG	0.498000													4	22					0	0	1	0	0
ANGEL1	23357	broad.mit.edu	37	14	77273120	77273120	+	Missense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr14:77273120C>G	uc001xsv.2	-	5	1132	c.1019G>C	c.(1018-1020)AGA>ACA	p.R340T	ANGEL1_uc010tvf.1_Intron	NM_015305	NP_056120	Q9UNK9	ANGE1_HUMAN	angel homolog 1	340										ovary(2)|central_nervous_system(1)|skin(1)	4			Kidney(204;0.164)	BRCA - Breast invasive adenocarcinoma(234;0.0285)		CAGGCGGAATCTGGTAGGCTT	0.517000													93	331					0	0	1	0	0
PTPN21	11099	broad.mit.edu	37	14	88983588	88983588	+	Silent	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr14:88983588G>A	uc001xwv.3	-	3	529	c.198C>T	c.(196-198)CTC>CTT	p.L66L	PTPN21_uc010twc.1_5'UTR|PTPN21_uc010atf.1_Silent_p.L66L	NM_007039	NP_008970	Q16825	PTN21_HUMAN	protein tyrosine phosphatase, non-receptor type	66	FERM.					cytoplasm|cytoskeleton	binding|protein tyrosine phosphatase activity			ovary(3)|skin(1)	4						TGTAGTACCAGAGGCTGAAGT	0.428000													20	72					0	0	1	0	0
C14orf159	80017	broad.mit.edu	37	14	91681877	91681877	+	Missense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr14:91681877C>G	uc001xzb.2	+	15	2446	c.1678C>G	c.(1678-1680)CAG>GAG	p.Q560E	C14orf159_uc001xyx.2_Missense_Mutation_p.Q508E|C14orf159_uc001xyw.2_Missense_Mutation_p.Q565E|C14orf159_uc001xzc.2_Missense_Mutation_p.Q560E|C14orf159_uc001xza.2_Missense_Mutation_p.Q565E|C14orf159_uc001xyv.2_Missense_Mutation_p.Q525E|C14orf159_uc001xyz.2_Missense_Mutation_p.Q436E|C14orf159_uc001xze.2_Missense_Mutation_p.Q560E	NM_001102366	NP_001095836	Q7Z3D6	CN159_HUMAN	hypothetical protein LOC80017 isoform a	560						mitochondrion				central_nervous_system(2)|ovary(1)	3		all_cancers(154;0.0191)|all_epithelial(191;0.241)		Epithelial(152;0.141)|OV - Ovarian serous cystadenocarcinoma(161;0.207)		GGCCTGGACTCAGGCCCTCCC	0.607000													23	74					0	0	1	0	0
SMEK1	55671	broad.mit.edu	37	14	91931636	91931636	+	Silent	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr14:91931636C>T	uc001xzn.2	-	11	2610	c.1788G>A	c.(1786-1788)CTG>CTA	p.L596L	SMEK1_uc001xzm.2_Silent_p.L583L|SMEK1_uc001xzo.2_Silent_p.L583L|SMEK1_uc010atz.2_Silent_p.L357L|SMEK1_uc001xzp.1_RNA	NM_032560	NP_115949	Q6IN85	P4R3A_HUMAN	SMEK homolog 1, suppressor of mek1	596						microtubule organizing center|nucleus	protein binding				0		all_cancers(154;0.0691)|all_epithelial(191;0.219)		COAD - Colon adenocarcinoma(157;0.221)		CAGAGTTCATCAGATTGTAGC	0.294000													27	72					0	0	1	0	0
CHGA	1113	broad.mit.edu	37	14	93396082	93396082	+	Nonsense_Mutation	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr14:93396082C>T	uc001ybc.3	+	5	537	c.277C>T	c.(277-279)CAG>TAG	p.Q93*	CHGA_uc010aum.2_RNA|CHGA_uc001ybd.3_Nonsense_Mutation_p.Q93*	NM_001275	NP_001266	P10645	CMGA_HUMAN	chromogranin A precursor	93					regulation of blood pressure	extracellular region|stored secretory granule				skin(2)	2		all_cancers(154;0.0843)		Epithelial(152;0.102)|COAD - Colon adenocarcinoma(157;0.208)|all cancers(159;0.224)		GAGGGCACATCAGCAGAAGAA	0.522000													21	72					0	0	1	0	0
KIAA1409	57578	broad.mit.edu	37	14	94038402	94038402	+	Nonsense_Mutation	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr14:94038402C>T	uc001ybv.1	+	12	1470	c.1387C>T	c.(1387-1389)CAG>TAG	p.Q463*	KIAA1409_uc001ybs.1_Nonsense_Mutation_p.Q463*	NM_020818	NP_065869	Q9P2D8	UNC79_HUMAN	hypothetical protein LOC57578	640						integral to membrane				ovary(10)|skin(4)|large_intestine(3)	17		all_cancers(154;0.0354)|all_epithelial(191;0.216)		Epithelial(152;0.188)		CCCAGATAATCAGTTAAAAGA	0.323000													15	40					0	0	1	0	0
DDX24	57062	broad.mit.edu	37	14	94528671	94528671	+	Missense_Mutation	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr14:94528671C>T	uc001ycj.2	-	3	1114	c.1015G>A	c.(1015-1017)GAA>AAA	p.E339K	DDX24_uc010twq.1_Missense_Mutation_p.E296K|DDX24_uc010twr.1_Missense_Mutation_p.E89K	NM_020414	NP_065147	Q9GZR7	DDX24_HUMAN	DEAD (Asp-Glu-Ala-Asp) box polypeptide 24	339	Helicase ATP-binding.				RNA metabolic process	cytoplasm|nucleolus|nucleolus	ATP binding|ATP-dependent RNA helicase activity|protein binding|RNA binding			ovary(2)|kidney(1)|skin(1)	4		all_cancers(154;0.12)		Epithelial(152;0.114)|all cancers(159;0.19)|COAD - Colon adenocarcinoma(157;0.207)		GAAGGCCCTTCACCAGCATCA	0.502000													6	222					0	0	1	0	0
DDX24	57062	broad.mit.edu	37	14	94545830	94545830	+	Nonsense_Mutation	SNP	C	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr14:94545830C>A	uc001ycj.2	-	2	358	c.259G>T	c.(259-261)GAG>TAG	p.E87*	DDX24_uc010twq.1_Nonsense_Mutation_p.E44*|DDX24_uc010twr.1_Intron|IFI27L1_uc001ycl.2_5'Flank|IFI27L1_uc001yck.2_5'Flank	NM_020414	NP_065147	Q9GZR7	DDX24_HUMAN	DEAD (Asp-Glu-Ala-Asp) box polypeptide 24	87	Poly-Glu.				RNA metabolic process	cytoplasm|nucleolus|nucleolus	ATP binding|ATP-dependent RNA helicase activity|protein binding|RNA binding			ovary(2)|kidney(1)|skin(1)	4		all_cancers(154;0.12)		Epithelial(152;0.114)|all cancers(159;0.19)|COAD - Colon adenocarcinoma(157;0.207)		CCCTCCTCCTCCTCCTCTTCT	0.443000													4	178					0.184627	0.184985	1	1	0
DDX24	57062	broad.mit.edu	37	14	94545836	94545836	+	Missense_Mutation	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr14:94545836C>T	uc001ycj.2	-	2	352	c.253G>A	c.(253-255)GAG>AAG	p.E85K	DDX24_uc010twq.1_Missense_Mutation_p.E42K|DDX24_uc010twr.1_Intron|IFI27L1_uc001ycl.2_5'Flank|IFI27L1_uc001yck.2_5'Flank	NM_020414	NP_065147	Q9GZR7	DDX24_HUMAN	DEAD (Asp-Glu-Ala-Asp) box polypeptide 24	85	Poly-Glu.				RNA metabolic process	cytoplasm|nucleolus|nucleolus	ATP binding|ATP-dependent RNA helicase activity|protein binding|RNA binding			ovary(2)|kidney(1)|skin(1)	4		all_cancers(154;0.12)		Epithelial(152;0.114)|all cancers(159;0.19)|COAD - Colon adenocarcinoma(157;0.207)		TCCTCCTCCTCTTCTTCTGAA	0.443000													4	183					0	0	1	0	0
ATG2B	55102	broad.mit.edu	37	14	96757971	96757971	+	Missense_Mutation	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr14:96757971C>T	uc001yfi.2	-	38	5910	c.5545G>A	c.(5545-5547)GAA>AAA	p.E1849K		NM_018036	NP_060506	Q96BY7	ATG2B_HUMAN	ATG2 autophagy related 2 homolog B	1849										ovary(1)|kidney(1)|skin(1)	3		all_cancers(154;0.0462)|all_epithelial(191;0.123)|Melanoma(154;0.155)		Epithelial(152;0.21)|COAD - Colon adenocarcinoma(157;0.244)		AGCTTTAGTTCAGAGCAGTTT	0.338000													39	103					0	0	1	0	0
ATG2B	55102	broad.mit.edu	37	14	96788562	96788562	+	Missense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr14:96788562C>G	uc001yfi.2	-	18	3131	c.2766G>C	c.(2764-2766)ATG>ATC	p.M922I		NM_018036	NP_060506	Q96BY7	ATG2B_HUMAN	ATG2 autophagy related 2 homolog B	922										ovary(1)|kidney(1)|skin(1)	3		all_cancers(154;0.0462)|all_epithelial(191;0.123)|Melanoma(154;0.155)		Epithelial(152;0.21)|COAD - Colon adenocarcinoma(157;0.244)		GAAATTCTGTCATTTCTACAG	0.348000													3	107					0	0	1	0	0
AK7	122481	broad.mit.edu	37	14	96864440	96864440	+	Nonsense_Mutation	SNP	C	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr14:96864440C>A	uc001yfn.2	+	2	178	c.134C>A	c.(133-135)TCG>TAG	p.S45*	AK7_uc001yfm.1_Nonsense_Mutation_p.S45*	NM_152327	NP_689540	Q96M32	KAD7_HUMAN	adenylate kinase 7	45					cell projection organization	cytosol	adenylate kinase activity|ATP binding|cytidylate kinase activity			ovary(1)	1		all_cancers(154;0.0482)|all_epithelial(191;0.128)|Melanoma(154;0.155)		Epithelial(152;0.134)|COAD - Colon adenocarcinoma(157;0.228)		GTTGGGGCTTCGCTTGAAGAA	0.413000													8	112					0.000274275	0.000278584	1	1	0
EVL	51466	broad.mit.edu	37	14	100604120	100604120	+	Missense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr14:100604120C>G	uc001ygt.2	+	11	1308	c.1069C>G	c.(1069-1071)CAG>GAG	p.Q357E	EVL_uc001ygv.2_Missense_Mutation_p.Q363E|EVL_uc001ygu.2_Missense_Mutation_p.Q359E|EVL_uc010avu.2_Missense_Mutation_p.Q216E	NM_016337	NP_057421	Q9UI08	EVL_HUMAN	Enah/Vasp-like	357	EVH2.				actin polymerization or depolymerization|axon guidance|cell surface receptor linked signaling pathway|organ morphogenesis	cytoskeleton|cytosol|focal adhesion|lamellipodium	actin binding|profilin binding|SH3 domain binding			large_intestine(2)|ovary(1)	3		Melanoma(154;0.152)				GAGCCCCCTTCAGTCGCAGCC	0.612000													27	93					0	0	1	0	0
BEGAIN	57596	broad.mit.edu	37	14	101005433	101005433	+	Missense_Mutation	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr14:101005433G>A	uc010txa.1	-	6	801	c.655C>T	c.(655-657)CGG>TGG	p.R219W	BEGAIN_uc001yhp.2_Missense_Mutation_p.R155W|BEGAIN_uc001yhq.2_Missense_Mutation_p.R219W	NM_001159531	NP_001153003	Q9BUH8	BEGIN_HUMAN	brain-enriched guanylate kinase-associated	219						cytoplasm|membrane	protein binding				0		Melanoma(154;0.212)				TAGGGGGGCCGCGGGCCTGGT	0.716000													10	13					0	0	1	0	0
AHNAK2	113146	broad.mit.edu	37	14	105410048	105410048	+	Missense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr14:105410048C>G	uc010axc.1	-	7	11860	c.11740G>C	c.(11740-11742)GAC>CAC	p.D3914H	AHNAK2_uc001ypx.2_Missense_Mutation_p.D3814H	NM_138420	NP_612429	Q8IVF2	AHNK2_HUMAN	AHNAK nucleoprotein 2	3914						nucleus				ovary(1)	1		all_cancers(154;0.115)|Melanoma(154;0.155)|all_epithelial(191;0.183)	all cancers(16;0.000479)|OV - Ovarian serous cystadenocarcinoma(23;0.00659)|Epithelial(46;0.0151)|GBM - Glioblastoma multiforme(11;0.116)			TCTTTTAGGTCCAGCTTGGGG	0.592000													66	261					0	0	1	0	0
NUDT14	256281	broad.mit.edu	37	14	105643316	105643316	+	Silent	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr14:105643316C>T	uc010tyn.1	-	3	288	c.174G>A	c.(172-174)GTG>GTA	p.V58V	NUDT14_uc001yqi.2_RNA	NM_177533	NP_803877	O95848	NUD14_HUMAN	nudix-type motif 14	58	Nudix hydrolase.					cytoplasm	metal ion binding|protein binding|UDP-sugar diphosphatase activity			skin(1)	1		all_cancers(154;0.0336)|all_epithelial(191;0.0729)|Melanoma(154;0.155)	OV - Ovarian serous cystadenocarcinoma(23;0.00989)|all cancers(16;0.0114)|Epithelial(46;0.0272)	Epithelial(152;0.047)|OV - Ovarian serous cystadenocarcinoma(161;0.148)|all cancers(159;0.208)		GGAACTGCTTCACCAACACCA	0.607000										HNSCC(42;0.11)			9	31					0	0	1	0	0
ADAM6	8755	broad.mit.edu	37	14	107095349	107095349	+	RNA	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr14:107095349G>C	uc010tyt.1	-	101		c.4738C>G								Parts of antibodies, mostly variable regions.												0						GGAGCCACCAGAGACAGTGCA	0.607000													3	124					0	0	1	0	0
MKRN3	7681	broad.mit.edu	37	15	23811531	23811531	+	Missense_Mutation	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr15:23811531C>T	uc001ywh.3	+	1	1078	c.602C>T	c.(601-603)GCG>GTG	p.A201V	MKRN3_uc001ywi.2_Intron|MKRN3_uc010ayi.1_Missense_Mutation_p.A201V	NM_005664	NP_005655	Q13064	MKRN3_HUMAN	makorin ring finger protein 3	201						ribonucleoprotein complex	ligase activity|nucleic acid binding|zinc ion binding			lung(6)|large_intestine(2)|ovary(2)	10		all_cancers(20;8.44e-25)|all_epithelial(15;3.69e-22)|Lung NSC(15;2.96e-18)|all_lung(15;2.8e-17)|Breast(32;0.000353)|Colorectal(260;0.14)		all cancers(64;3.02e-06)|Epithelial(43;1.94e-05)|BRCA - Breast invasive adenocarcinoma(123;0.0012)		GAAAGCTGGGCGGATGCCATT	0.592000													14	41					0	0	1	0	0
MTMR15	22909	broad.mit.edu	37	15	31214456	31214456	+	Missense_Mutation	SNP	G	A	A	rs111476645	byFrequency	TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr15:31214456G>A	uc001zff.2	+	8	2362	c.2071G>A	c.(2071-2073)GAA>AAA	p.E691K	MTMR15_uc001zfe.2_Missense_Mutation_p.E296K	NM_014967	NP_055782	Q9Y2M0	FAN1_HUMAN	myotubularin related protein 15 isoform a	691	Potential.				double-strand break repair via homologous recombination|nucleotide-excision repair, DNA incision	nucleus	5'-3' exonuclease activity|5'-flap endonuclease activity|DNA binding|magnesium ion binding|phosphodiesterase I activity|ubiquitin binding				0		all_lung(180;2.23e-09)		all cancers(64;4.72e-15)|Epithelial(43;5.4e-11)|GBM - Glioblastoma multiforme(186;0.000136)|BRCA - Breast invasive adenocarcinoma(123;0.00402)|Lung(196;0.168)		CAGAGAACTTGAAAGCCTTTT	0.438000								Direct_reversal_of_damage|Editing_and_processing_nucleases					4	148					0	0	1	0	0
RYR3	6263	broad.mit.edu	37	15	33872331	33872331	+	Missense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr15:33872331C>G	uc001zhi.2	+	13	1493	c.1423C>G	c.(1423-1425)CTT>GTT	p.L475V	RYR3_uc010bar.2_Missense_Mutation_p.L475V	NM_001036	NP_001027	Q15413	RYR3_HUMAN	ryanodine receptor 3	475	Cytoplasmic (By similarity).				cellular calcium ion homeostasis	integral to membrane	calcium ion binding|receptor activity|ryanodine-sensitive calcium-release channel activity			ovary(5)|central_nervous_system(4)|lung(1)	10		all_lung(180;7.18e-09)		all cancers(64;8.95e-12)|GBM - Glioblastoma multiforme(186;0.00109)|BRCA - Breast invasive adenocarcinoma(123;0.0363)		CAGACAAAATCTTTTCAAGGA	0.443000													5	15					0	0	1	0	0
RYR3	6263	broad.mit.edu	37	15	33988603	33988603	+	Silent	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr15:33988603C>T	uc001zhi.2	+	39	6115	c.6045C>T	c.(6043-6045)ATC>ATT	p.I2015I	RYR3_uc010bar.2_Silent_p.I2015I	NM_001036	NP_001027	Q15413	RYR3_HUMAN	ryanodine receptor 3	2015	4 X approximate repeats.|Cytoplasmic (By similarity).				cellular calcium ion homeostasis	integral to membrane	calcium ion binding|receptor activity|ryanodine-sensitive calcium-release channel activity			ovary(5)|central_nervous_system(4)|lung(1)	10		all_lung(180;7.18e-09)		all cancers(64;8.95e-12)|GBM - Glioblastoma multiforme(186;0.00109)|BRCA - Breast invasive adenocarcinoma(123;0.0363)		GCGACACCATCAACCTGCTGG	0.582000													35	95					0	0	1	0	0
SLC12A6	9990	broad.mit.edu	37	15	34553159	34553159	+	Missense_Mutation	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr15:34553159C>T	uc001zhw.2	-	3	543	c.379G>A	c.(379-381)GAA>AAA	p.E127K	SLC12A6_uc001zhv.2_Missense_Mutation_p.E76K|SLC12A6_uc001zhx.2_Missense_Mutation_p.E112K|SLC12A6_uc001zhy.2_RNA|SLC12A6_uc001zhz.2_RNA|SLC12A6_uc001zia.2_Missense_Mutation_p.E68K|SLC12A6_uc001zib.2_Missense_Mutation_p.E118K|SLC12A6_uc001zic.2_Missense_Mutation_p.E127K|SLC12A6_uc010bau.2_Missense_Mutation_p.E127K|SLC12A6_uc001zid.2_Missense_Mutation_p.E68K|SLC12A6_uc001zhu.2_5'UTR	NM_133647	NP_598408	Q9UHW9	S12A6_HUMAN	solute carrier family 12, member 6 isoform a	127	Cytoplasmic (Potential).				angiogenesis|cellular hypotonic salinity response|potassium ion transport|sodium ion transport	basolateral plasma membrane|integral to membrane	potassium:chloride symporter activity			central_nervous_system(5)|ovary(1)|skin(1)	7		all_lung(180;2.78e-08)		all cancers(64;3.43e-17)|GBM - Glioblastoma multiforme(113;2.6e-07)|BRCA - Breast invasive adenocarcinoma(123;0.0301)	Potassium Chloride(DB00761)	TCAAAATATTCATCTCCTTCT	0.333000													13	64					0	0	1	0	0
AQR	9716	broad.mit.edu	37	15	35166070	35166070	+	Nonsense_Mutation	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr15:35166070G>A	uc001ziv.2	-	30	3737	c.3556C>T	c.(3556-3558)CAA>TAA	p.Q1186*		NM_014691	NP_055506	O60306	AQR_HUMAN	aquarius	1186						catalytic step 2 spliceosome	RNA binding			large_intestine(1)	1		Lung NSC(122;8.7e-10)|all_lung(180;1.47e-08)		all cancers(64;4.34e-18)|GBM - Glioblastoma multiforme(113;4.59e-07)|BRCA - Breast invasive adenocarcinoma(123;0.0283)		CCCACTCCTTGAAAATCTTCA	0.388000													34	81					0	0	1	0	0
PAK6	56924	broad.mit.edu	37	15	40564435	40564435	+	Missense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr15:40564435C>G	uc010bbl.2	+	6	1309	c.869C>G	c.(868-870)TCT>TGT	p.S290C	PAK6_uc010bbm.2_Missense_Mutation_p.S290C|PAK6_uc001zky.3_Missense_Mutation_p.S290C|PAK6_uc010bbn.2_Missense_Mutation_p.S290C|PAK6_uc001zlb.2_Missense_Mutation_p.S290C	NM_001128628	NP_001122100	Q9NQU5	PAK6_HUMAN	p21-activated kinase 6	290	Linker.						ATP binding|protein binding|protein serine/threonine kinase activity			lung(5)|large_intestine(1)|ovary(1)|skin(1)	8		all_cancers(109;1.13e-18)|all_epithelial(112;1.62e-15)|Lung NSC(122;5.67e-11)|all_lung(180;1.41e-09)|Melanoma(134;0.0574)|Ovarian(310;0.0823)|Colorectal(260;0.117)		GBM - Glioblastoma multiforme(113;1.51e-05)|BRCA - Breast invasive adenocarcinoma(123;0.0544)		CCCAACTCCTCTTTCCGACCG	0.642000													5	179					0	0	1	0	0
CHST14	113189	broad.mit.edu	37	15	40764159	40764159	+	Silent	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr15:40764159G>A	uc001zlw.2	+	1	947	c.747G>A	c.(745-747)GCG>GCA	p.A249A		NM_130468	NP_569735	Q8NCH0	CHSTE_HUMAN	dermatan 4 sulfotransferase 1	249	Lumenal (Potential).				carbohydrate biosynthetic process|dermatan sulfate proteoglycan metabolic process	Golgi membrane|integral to membrane	N-acetylgalactosamine 4-O-sulfotransferase activity|phosphate binding				0		all_cancers(109;2.34e-14)|all_epithelial(112;1.08e-11)|Lung NSC(122;2.95e-09)|all_lung(180;6.03e-08)|Melanoma(134;0.091)|Colorectal(260;0.198)|Ovarian(310;0.243)		GBM - Glioblastoma multiforme(113;3e-06)|BRCA - Breast invasive adenocarcinoma(123;0.0781)		GGGCTGGAGCGGGGCCCAGCC	0.597000													45	148					0	0	1	0	0
INO80	54617	broad.mit.edu	37	15	41275976	41275976	+	Silent	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr15:41275976G>A	uc001zni.2	-	34	4434	c.4221C>T	c.(4219-4221)GTC>GTT	p.V1407V	INO80_uc010ucu.1_RNA	NM_017553	NP_060023	Q9ULG1	INO80_HUMAN	INO80 complex homolog 1	1407	Assembles INO80 complex module consisting of conserved components INO80B, INO80C, ACTR5, RVBL1, RVBL2.				cell division|cellular response to ionizing radiation|cellular response to UV|chromatin remodeling|double-strand break repair via homologous recombination|mitotic sister chromatid segregation|positive regulation of cell growth|positive regulation of DNA replication involved in S phase|positive regulation of transcription from RNA polymerase II promoter|regulation of G1/S transition of mitotic cell cycle|spindle assembly|UV-damage excision repair	Ino80 complex|microtubule	actin binding|alpha-tubulin binding|ATP binding|ATPase activity|DNA binding|DNA helicase activity			ovary(2)|pancreas(1)|skin(1)	4						CGGTATCTGAGACGGAGCCTG	0.547000													12	30					0	0	1	0	0
RPAP1	26015	broad.mit.edu	37	15	41815045	41815045	+	Missense_Mutation	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr15:41815045G>A	uc001zod.2	-	19	2784	c.2660C>T	c.(2659-2661)TCA>TTA	p.S887L	RPAP1_uc001zoc.2_Intron	NM_015540	NP_056355	Q9BWH6	RPAP1_HUMAN	RNA polymerase II associated protein 1	887	Leu-rich.					nucleus	DNA binding|DNA-directed RNA polymerase activity			large_intestine(1)	1		all_cancers(109;6.59e-20)|all_epithelial(112;7.67e-17)|Lung NSC(122;5.34e-11)|all_lung(180;4.17e-10)|Melanoma(134;0.0179)|Ovarian(310;0.143)|Colorectal(260;0.173)		OV - Ovarian serous cystadenocarcinoma(18;2.84e-17)|GBM - Glioblastoma multiforme(113;1.68e-06)|Colorectal(105;0.0163)|BRCA - Breast invasive adenocarcinoma(123;0.117)		GGGTGAGGCTGAGCCAGCCAG	0.637000													17	40					0	0	1	0	0
PLA2G4F	255189	broad.mit.edu	37	15	42446305	42446305	+	Silent	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr15:42446305G>A	uc001zoz.2	-	4	498	c.435C>T	c.(433-435)TTC>TTT	p.F145F	PLA2G4F_uc010bcr.2_5'UTR|PLA2G4F_uc001zpa.2_5'UTR|PLA2G4F_uc010bcs.2_5'UTR	NM_213600	NP_998765	Q68DD2	PA24F_HUMAN	phospholipase A2, group IVF	145					phospholipid catabolic process	cytosol|lysosomal membrane	metal ion binding|phospholipase A2 activity			ovary(4)	4		all_cancers(109;4.82e-12)|all_epithelial(112;5.64e-11)|Lung NSC(122;2.17e-07)|all_lung(180;8.79e-07)|Melanoma(134;0.091)		GBM - Glioblastoma multiforme(94;8.97e-07)		GGTTGAGTGGGAAGGTGTGTT	0.617000													19	98					0	0	1	0	0
CAPN3	825	broad.mit.edu	37	15	42680062	42680062	+	Missense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr15:42680062C>G	uc001zpn.1	+	4	916	c.610C>G	c.(610-612)CTG>GTG	p.L204V	CAPN3_uc001zpk.1_5'UTR|CAPN3_uc001zpl.1_Missense_Mutation_p.L117V|CAPN3_uc010udf.1_Missense_Mutation_p.L117V|CAPN3_uc010udg.1_Missense_Mutation_p.L117V|CAPN3_uc001zpo.1_Missense_Mutation_p.L204V|CAPN3_uc001zpp.1_Missense_Mutation_p.L204V	NM_000070	NP_000061	P20807	CAN3_HUMAN	calpain 3 isoform a	204	Calpain catalytic.		Missing (in LGMD2A).		muscle organ development|proteolysis	cytoplasm	calcium ion binding|calcium-dependent cysteine-type endopeptidase activity|signal transducer activity			central_nervous_system(1)	1		all_cancers(109;1.65e-16)|all_epithelial(112;8.34e-15)|Lung NSC(122;3.56e-09)|all_lung(180;1.68e-08)|Melanoma(134;0.0574)|Colorectal(260;0.152)		GBM - Glioblastoma multiforme(94;7.36e-07)		CTGGAGTGCTCTGCTGGAGAA	0.498000													25	87					0	0	1	0	0
ZFP106	64397	broad.mit.edu	37	15	42731632	42731632	+	Silent	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr15:42731632C>T	uc001zpw.2	-	8	4409	c.4074G>A	c.(4072-4074)AAG>AAA	p.K1358K	ZFP106_uc001zpu.2_Silent_p.K456K|ZFP106_uc001zpv.2_Silent_p.K543K|ZFP106_uc001zpx.2_Silent_p.K586K	NM_022473	NP_071918	Q9H2Y7	ZF106_HUMAN	zinc finger protein 106 homolog	1358						nucleolus	zinc ion binding			central_nervous_system(2)|ovary(1)	3		all_cancers(109;1.63e-12)|all_epithelial(112;3.97e-11)|Lung NSC(122;2.04e-07)|all_lung(180;8.31e-07)|Melanoma(134;0.091)		GBM - Glioblastoma multiforme(94;8.6e-07)		GTAGACTTTTCTTCTTCCGGA	0.443000													57	193					0	0	1	0	0
TTBK2	146057	broad.mit.edu	37	15	43044395	43044395	+	Missense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr15:43044395C>G	uc001zqo.2	-	14	3488	c.3049G>C	c.(3049-3051)GAG>CAG	p.E1017Q	TTBK2_uc010bcy.2_Missense_Mutation_p.E948Q	NM_173500	NP_775771	Q6IQ55	TTBK2_HUMAN	tau tubulin kinase 2	1017					cell death		ATP binding|protein serine/threonine kinase activity			ovary(2)|lung(2)|stomach(1)|pancreas(1)|skin(1)	7		all_cancers(109;6.11e-16)|all_epithelial(112;5.5e-14)|Lung NSC(122;1.76e-08)|all_lung(180;6.04e-08)|Melanoma(134;0.0179)|Colorectal(260;0.216)		GBM - Glioblastoma multiforme(94;3.23e-07)		AGCACTTCCTCCTCACAAAAG	0.458000													19	79					0	0	1	0	0
TTBK2	146057	broad.mit.edu	37	15	43044957	43044957	+	Missense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr15:43044957C>G	uc001zqo.2	-	14	2926	c.2487G>C	c.(2485-2487)CAG>CAC	p.Q829H	TTBK2_uc010bcy.2_Missense_Mutation_p.Q760H	NM_173500	NP_775771	Q6IQ55	TTBK2_HUMAN	tau tubulin kinase 2	829					cell death		ATP binding|protein serine/threonine kinase activity			ovary(2)|lung(2)|stomach(1)|pancreas(1)|skin(1)	7		all_cancers(109;6.11e-16)|all_epithelial(112;5.5e-14)|Lung NSC(122;1.76e-08)|all_lung(180;6.04e-08)|Melanoma(134;0.0179)|Colorectal(260;0.216)		GBM - Glioblastoma multiforme(94;3.23e-07)		CACTAAAAGTCTGTGTTTTTG	0.403000													4	131					0	0	1	0	0
TMEM62	80021	broad.mit.edu	37	15	43470851	43470851	+	Missense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr15:43470851G>C	uc001zqr.2	+	12	1707	c.1428G>C	c.(1426-1428)TTG>TTC	p.L476F	TMEM62_uc010bda.2_Intron|TMEM62_uc001zqt.2_Missense_Mutation_p.L45F	NM_024956	NP_079232	Q0P6H9	TMM62_HUMAN	transmembrane protein 62	476						integral to membrane				ovary(1)|breast(1)	2		all_cancers(109;1.16e-10)|all_epithelial(112;2.01e-09)|Lung NSC(122;8.91e-07)|all_lung(180;8.8e-06)|Melanoma(134;0.0728)		GBM - Glioblastoma multiforme(94;4.23e-07)		TTCATGTCTTGAGCAAAATAA	0.343000													3	46					0	0	1	0	0
ZSCAN29	146050	broad.mit.edu	37	15	43658612	43658612	+	Silent	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr15:43658612C>T	uc001zrk.1	-	3	1065	c.918G>A	c.(916-918)CAG>CAA	p.Q306Q	ZSCAN29_uc001zrj.1_Silent_p.Q186Q|ZSCAN29_uc010bdf.1_Silent_p.Q305Q|ZSCAN29_uc001zrl.1_RNA|ZSCAN29_uc010bdg.1_Intron|ZSCAN29_uc001zrm.2_Silent_p.Q305Q	NM_152455	NP_689668	Q8IWY8	ZSC29_HUMAN	zinc finger protein 690	306					viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			skin(1)	1		all_cancers(109;2.12e-14)|all_epithelial(112;1.99e-12)|Lung NSC(122;2.46e-08)|all_lung(180;2.75e-07)|Melanoma(134;0.0476)|Colorectal(260;0.215)		GBM - Glioblastoma multiforme(94;8.97e-07)		GATAGCTCTTCTGGAGACCTT	0.562000													33	124					0	0	1	0	0
TUBGCP4	27229	broad.mit.edu	37	15	43696643	43696643	+	Missense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr15:43696643G>C	uc001zro.2	+	17	2124	c.1884G>C	c.(1882-1884)AAG>AAC	p.K628N	TUBGCP4_uc001zrn.2_Missense_Mutation_p.K627N|TUBGCP4_uc010bdh.2_RNA	NM_014444	NP_055259	Q9UGJ1	GCP4_HUMAN	tubulin, gamma complex associated protein 4	628					G2/M transition of mitotic cell cycle|microtubule nucleation|protein complex assembly	centrosome|cytosol|gamma-tubulin ring complex|microtubule|spindle pole	structural constituent of cytoskeleton			ovary(3)	3		all_cancers(109;1.27e-10)|all_epithelial(112;4.82e-09)|Lung NSC(122;1.72e-06)|all_lung(180;1.59e-05)|Melanoma(134;0.0728)		GBM - Glioblastoma multiforme(94;3.53e-07)		TCCTGTTCAAGATTCTCTCCA	0.478000													3	68					0	0	1	0	0
MAP1A	4130	broad.mit.edu	37	15	43814640	43814640	+	Silent	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr15:43814640C>G	uc001zrt.2	+	4	1436	c.969C>G	c.(967-969)CTC>CTG	p.L323L		NM_002373	NP_002364	P78559	MAP1A_HUMAN	microtubule-associated protein 1A	323	Lys-rich (basic).					cytoplasm|microtubule|microtubule associated complex	protein binding|structural molecule activity			ovary(3)|breast(3)|pancreas(2)|skin(1)	9		all_cancers(109;1.03e-14)|all_epithelial(112;2.23e-12)|Lung NSC(122;2.76e-08)|all_lung(180;3.1e-07)|Melanoma(134;0.0476)|Colorectal(260;0.215)		GBM - Glioblastoma multiforme(94;3.05e-06)	Estramustine(DB01196)	AGGAGAGCCTCAAAGCCACTA	0.582000													12	39					0	0	1	0	0
ELL3	80237	broad.mit.edu	37	15	44068050	44068050	+	Missense_Mutation	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr15:44068050G>A	uc001zsw.1	-	4	756	c.353C>T	c.(352-354)TCT>TTT	p.S118F	ELL3_uc001zsv.1_Missense_Mutation_p.S72F|ELL3_uc001zsx.1_Missense_Mutation_p.S3F|uc001zsy.2_5'Flank	NM_025165	NP_079441	Q9HB65	ELL3_HUMAN	elongation factor RNA polymerase II-like 3	118					positive regulation of transcription elongation, DNA-dependent|positive regulation of transcription from RNA polymerase II promoter|spermatogenesis|transcription elongation from RNA polymerase II promoter	transcription elongation factor complex				ovary(1)	1		all_cancers(109;7.57e-15)|all_epithelial(112;3.51e-12)|Lung NSC(122;4.72e-08)|all_lung(180;4.9e-07)|Melanoma(134;0.027)|Colorectal(260;0.215)		GBM - Glioblastoma multiforme(94;7.81e-07)		GGCTGGGATAGAATCCATGGC	0.522000											OREG0023092	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	20	74					0	0	1	0	0
B2M	567	broad.mit.edu	37	15	45007833	45007833	+	Missense_Mutation	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr15:45007833G>A	uc001zuc.2	+	2	340	c.280G>A	c.(280-282)GAA>AAA	p.E94K	B2M_uc010uek.1_Missense_Mutation_p.E94K|B2M_uc010bdx.1_Intron	NM_004048	NP_004039	P61769	B2MG_HUMAN	beta-2-microglobulin precursor	94	Ig-like C1-type.				antigen processing and presentation of peptide antigen via MHC class I|interferon-gamma-mediated signaling pathway|regulation of defense response to virus by virus|viral reproduction	early endosome membrane|Golgi membrane|MHC class I protein complex	protein binding			ovary(2)|skin(1)	3		all_cancers(109;1.88e-13)|all_epithelial(112;2.13e-11)|Lung NSC(122;2.22e-07)|all_lung(180;1.81e-06)|Melanoma(134;0.0122)		all cancers(107;4.16e-21)|GBM - Glioblastoma multiforme(94;8.97e-07)|COAD - Colon adenocarcinoma(120;0.0357)|Colorectal(105;0.0377)|Lung(196;0.0903)|LUSC - Lung squamous cell carcinoma(244;0.192)		CACCCCCACTGAAAAAGATGA	0.423000													31	134					0	0	1	0	0
CEP152	22995	broad.mit.edu	37	15	49048135	49048135	+	Silent	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr15:49048135G>A	uc001zwy.2	-	20	3344	c.3310C>T	c.(3310-3312)CTG>TTG	p.L1104L	CEP152_uc001zwz.2_Silent_p.L1104L|CEP152_uc001zxa.1_Silent_p.L1011L	NM_014985	NP_055800	O94986	CE152_HUMAN	centrosomal protein 152kDa	1104					centrosome duplication|G2/M transition of mitotic cell cycle	centrosome|cytosol	protein kinase binding			lung(2)	2		all_lung(180;0.0428)		all cancers(107;1.08e-07)|GBM - Glioblastoma multiforme(94;2.32e-06)		TCTACAAGCAGAGGAAGTGTA	0.368000													62	176					0	0	1	0	0
CEP152	22995	broad.mit.edu	37	15	49064853	49064853	+	Nonsense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr15:49064853G>C	uc001zwy.2	-	13	1647	c.1613C>G	c.(1612-1614)TCA>TGA	p.S538*	CEP152_uc001zwz.2_Nonsense_Mutation_p.S538*|CEP152_uc001zxa.1_Nonsense_Mutation_p.S445*	NM_014985	NP_055800	O94986	CE152_HUMAN	centrosomal protein 152kDa	538					centrosome duplication|G2/M transition of mitotic cell cycle	centrosome|cytosol	protein kinase binding			lung(2)	2		all_lung(180;0.0428)		all cancers(107;1.08e-07)|GBM - Glioblastoma multiforme(94;2.32e-06)		CTCATCTTTTGAAAGCTCTTC	0.363000													3	140					0	0	1	0	0
CEP152	22995	broad.mit.edu	37	15	49083487	49083487	+	Missense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr15:49083487G>C	uc001zwy.2	-	8	953	c.919C>G	c.(919-921)CAA>GAA	p.Q307E	CEP152_uc001zwz.2_Missense_Mutation_p.Q307E|CEP152_uc001zxa.1_Missense_Mutation_p.Q214E	NM_014985	NP_055800	O94986	CE152_HUMAN	centrosomal protein 152kDa	307	Potential.				centrosome duplication|G2/M transition of mitotic cell cycle	centrosome|cytosol	protein kinase binding			lung(2)	2		all_lung(180;0.0428)		all cancers(107;1.08e-07)|GBM - Glioblastoma multiforme(94;2.32e-06)		GCTTTTATTTGAGCTTCAAGC	0.328000													4	76					0	0	1	0	0
ATP8B4	79895	broad.mit.edu	37	15	50190329	50190329	+	Silent	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr15:50190329C>T	uc001zxu.2	-	22	2551	c.2409G>A	c.(2407-2409)AAG>AAA	p.K803K	ATP8B4_uc010ber.2_Silent_p.K676K|ATP8B4_uc010ufd.1_Silent_p.K613K|ATP8B4_uc010ufe.1_RNA|ATP8B4_uc001zxv.1_Silent_p.K101K	NM_024837	NP_079113	Q8TF62	AT8B4_HUMAN	ATPase class I type 8B member 4	803	Cytoplasmic (Potential).				ATP biosynthetic process	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|magnesium ion binding|phospholipid-translocating ATPase activity			skin(3)|ovary(2)|breast(2)|large_intestine(1)	8		all_lung(180;0.00183)		all cancers(107;2.41e-07)|GBM - Glioblastoma multiforme(94;8.28e-05)		TTCTGTACTTCTTCACCAGCT	0.433000													20	64					0	0	1	0	0
GABPB1	2553	broad.mit.edu	37	15	50596276	50596276	+	Missense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr15:50596276C>G	uc001zyb.2	-	3	587	c.163G>C	c.(163-165)GAG>CAG	p.E55Q	GABPB1_uc001zya.2_Missense_Mutation_p.E55Q|GABPB1_uc010ufg.1_5'UTR|GABPB1_uc001zyc.2_Missense_Mutation_p.E55Q|GABPB1_uc001zyd.2_Missense_Mutation_p.E55Q|GABPB1_uc001zye.2_Missense_Mutation_p.E55Q|GABPB1_uc001zyf.2_Missense_Mutation_p.E55Q	NM_005254	NP_005245	Q06547	GABP1_HUMAN	GA binding protein transcription factor, beta	55	ANK 2.				positive regulation of transcription from RNA polymerase II promoter	nucleus	protein binding|protein heterodimerization activity|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding			large_intestine(1)	1						AGCAGTACCTCTGTGGTGGAA	0.453000													30	109					0	0	1	0	0
DMXL2	23312	broad.mit.edu	37	15	51768825	51768825	+	Missense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr15:51768825C>G	uc002abf.2	-	27	7147	c.6922G>C	c.(6922-6924)GAA>CAA	p.E2308Q	DMXL2_uc002abd.2_Missense_Mutation_p.E379Q|DMXL2_uc010ufy.1_Missense_Mutation_p.E2309Q|DMXL2_uc010bfa.2_Missense_Mutation_p.E1672Q	NM_015263	NP_056078	Q8TDJ6	DMXL2_HUMAN	Dmx-like 2	2308						cell junction|synaptic vesicle membrane	Rab GTPase binding			ovary(6)|skin(3)	9				all cancers(107;0.00494)		GTTGCGTGTTCTTCAATGCTT	0.358000													44	137					0	0	1	0	0
DMXL2	23312	broad.mit.edu	37	15	51837929	51837929	+	Missense_Mutation	SNP	G	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr15:51837929G>T	uc002abf.2	-	8	1006	c.781C>A	c.(781-783)CAT>AAT	p.H261N	DMXL2_uc010ufy.1_Missense_Mutation_p.H261N|DMXL2_uc010bfa.2_Missense_Mutation_p.H261N	NM_015263	NP_056078	Q8TDJ6	DMXL2_HUMAN	Dmx-like 2	261	WD 3.					cell junction|synaptic vesicle membrane	Rab GTPase binding			ovary(6)|skin(3)	9				all cancers(107;0.00494)		ACACCATCATGACATGAAGTT	0.383000													7	213					0.00307968	0.00310822	1	1	0
TMOD2	29767	broad.mit.edu	37	15	52090411	52090411	+	Silent	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr15:52090411G>A	uc002abk.2	+	8	971	c.750G>A	c.(748-750)CTG>CTA	p.L250L	TMOD2_uc002abl.3_Silent_p.L214L|TMOD2_uc010bfb.2_Silent_p.L206L	NM_014548	NP_055363	Q9NZR1	TMOD2_HUMAN	neuronal tropomodulin isoform a	250					nervous system development	cytoplasm|cytoskeleton	actin binding|tropomyosin binding			ovary(2)	2				all cancers(107;0.00435)		CAGACATGCTGAAAGTAAACA	0.353000													17	56					0	0	1	0	0
KIAA1370	56204	broad.mit.edu	37	15	52901377	52901377	+	Silent	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr15:52901377C>T	uc002acg.3	-	6	1887	c.1734G>A	c.(1732-1734)TTG>TTA	p.L578L	KIAA1370_uc002ach.3_RNA|KIAA1370_uc010bfg.1_Silent_p.L490L|KIAA1370_uc010ugf.1_Silent_p.L585L	NM_019600	NP_062546	Q32MH5	K1370_HUMAN	hypothetical protein LOC56204	578											0				all cancers(107;0.0803)		TTTGATGTTTCAAAGAACACT	0.313000													20	66					0	0	1	0	0
CCPG1	9236	broad.mit.edu	37	15	55664134	55664134	+	Missense_Mutation	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr15:55664134G>A	uc002acv.1	-	6	728	c.563C>T	c.(562-564)TCA>TTA	p.S188L	CCPG1_uc002acy.2_Missense_Mutation_p.S188L|CCPG1_uc002acu.1_Missense_Mutation_p.S44L|CCPG1_uc002acw.1_5'UTR|CCPG1_uc002acx.2_Missense_Mutation_p.S188L|CCPG1_uc010bfk.1_Missense_Mutation_p.S188L|CCPG1_uc002acz.1_Missense_Mutation_p.S188L	NM_020739	NP_065790	Q9ULG6	CCPG1_HUMAN	cell cycle progression 1 isoform 2	188	Cytoplasmic (Potential).|Interaction with MCF2L and SRC (By similarity).				cell cycle	integral to membrane				ovary(1)	1				all cancers(107;0.0354)		TTCAGATTCTGAAGCAGAAAC	0.448000													23	65					0	0	1	0	0
ALDH1A2	8854	broad.mit.edu	37	15	58357776	58357776	+	Missense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr15:58357776G>C	uc002aex.2	-	1	131	c.73C>G	c.(73-75)CTC>GTC	p.L25V	ALDH1A2_uc002aey.2_Missense_Mutation_p.L25V|ALDH1A2_uc010ugv.1_5'UTR|ALDH1A2_uc010ugw.1_Intron	NM_003888	NP_003879	O94788	AL1A2_HUMAN	aldehyde dehydrogenase 1A2 isoform 1	25					negative regulation of cell proliferation|neural tube development|response to cytokine stimulus	nucleus	3-chloroallyl aldehyde dehydrogenase activity|retinal binding|retinal dehydrogenase activity			central_nervous_system(1)	1				GBM - Glioblastoma multiforme(80;0.152)|all cancers(107;0.18)	NADH(DB00157)|Tretinoin(DB00755)|Vitamin A(DB00162)	GACGGCAGGAGGTGCAGCGAC	0.647000													14	55					0	0	1	0	0
HSP90AB4P	664618	broad.mit.edu	37	15	58985285	58985285	+	Missense_Mutation	SNP	T	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr15:58985285T>C	uc002afh.1	-	1	40	c.40A>G	c.(40-42)ATT>GTT	p.I14V	ADAM10_uc002afd.1_Intron|ADAM10_uc010bgc.1_Intron|ADAM10_uc010ugz.1_Intron|ADAM10_uc002afe.1_Intron|ADAM10_uc002afg.2_Intron	NR_002927				RecName: Full=Putative heat shock protein HSP 90-beta 4;												0						TGAAGGAAAATCTCCTTGTTG	0.453000													15	53					0	0	1	0	0
RNF111	54778	broad.mit.edu	37	15	59323793	59323793	+	Missense_Mutation	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr15:59323793G>A	uc002afv.2	+	2	1051	c.772G>A	c.(772-774)GAG>AAG	p.E258K	RNF111_uc002afs.2_Missense_Mutation_p.E258K|RNF111_uc002aft.2_Missense_Mutation_p.E258K|RNF111_uc002afu.2_Missense_Mutation_p.E258K|RNF111_uc002afw.2_Missense_Mutation_p.E258K	NM_017610	NP_060080	Q6ZNA4	RN111_HUMAN	ring finger protein 111	258	Ser-rich.|Interaction with AXIN1.				multicellular organismal development|positive regulation of transcription, DNA-dependent	cytoplasm|nucleus	protein binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(2)	2				all cancers(107;0.194)		TAGTTCCAGTGAGAATGACCT	0.408000													27	104					0	0	1	0	0
TRIP4	9325	broad.mit.edu	37	15	64701923	64701923	+	Silent	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr15:64701923G>A	uc002anm.2	+	7	982	c.939G>A	c.(937-939)CTG>CTA	p.L313L		NM_016213	NP_057297	Q15650	TRIP4_HUMAN	thyroid hormone receptor interactor 4	313					positive regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter	cytoplasm|nucleus	ligand-dependent nuclear receptor binding|transcription coactivator activity|zinc ion binding			ovary(1)|kidney(1)|skin(1)	3						AGGAGGAGCTGAGAGAACTTC	0.453000													37	113					0	0	1	0	0
PLEKHO2	80301	broad.mit.edu	37	15	65157149	65157149	+	Missense_Mutation	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr15:65157149G>A	uc002anv.2	+	6	669	c.535G>A	c.(535-537)GAC>AAC	p.D179N	PLEKHO2_uc010bgz.2_Intron|PLEKHO2_uc002anw.2_Missense_Mutation_p.D129N	NM_025201	NP_079477	Q8TD55	PKHO2_HUMAN	pleckstrin homology domain containing, family O	179	Pro-rich.									ovary(1)|lung(1)	2						TGATGTTCCGGACAGTGGGCC	0.592000													44	160					0	0	1	0	0
DIS3L	115752	broad.mit.edu	37	15	66618191	66618191	+	Missense_Mutation	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr15:66618191G>A	uc010ujm.1	+	12	1705	c.1690G>A	c.(1690-1692)GAA>AAA	p.E564K	DIS3L_uc010ujl.1_Missense_Mutation_p.E194K|DIS3L_uc002app.2_Missense_Mutation_p.E481K|DIS3L_uc002apq.2_Missense_Mutation_p.E564K|DIS3L_uc010bho.2_Missense_Mutation_p.E430K	NM_001143688	NP_001137160	Q8TF46	DI3L1_HUMAN	DIS3 mitotic control homolog (S.	564					rRNA catabolic process	cytoplasm|exosome (RNase complex)	exonuclease activity|protein binding|ribonuclease activity|RNA binding			ovary(2)	2						CATCATGTGGGAACTGGATAA	0.323000													45	173					0	0	1	0	0
IQCH	64799	broad.mit.edu	37	15	67664960	67664960	+	Nonsense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr15:67664960C>G	uc002aqo.1	+	9	1312	c.1265C>G	c.(1264-1266)TCA>TGA	p.S422*	IQCH_uc010ujv.1_Nonsense_Mutation_p.S241*|IQCH_uc002aqn.1_Nonsense_Mutation_p.S249*|IQCH_uc002aqq.1_Nonsense_Mutation_p.S170*|IQCH_uc002aqp.1_Nonsense_Mutation_p.S174*	NM_001031715	NP_001026885	Q86VS3	IQCH_HUMAN	IQ motif containing H isoform 1	422										skin(3)|ovary(1)	4				Colorectal(3;0.0856)		CTAAAGGAATCACGTCAGAGA	0.458000													41	152					0	0	1	0	0
LARP6	55323	broad.mit.edu	37	15	71125446	71125446	+	Missense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr15:71125446G>C	uc002ass.2	-	3	492	c.421C>G	c.(421-423)CTT>GTT	p.L141V		NM_018357	NP_060827	Q9BRS8	LARP6_HUMAN	La ribonucleoprotein domain family, member 6	141	HTH La-type RNA-binding.				RNA processing	Golgi apparatus|nucleus|ribonucleoprotein complex	nucleotide binding|RNA binding				0						TCCCGTGTAAGATGTTTCACC	0.483000													9	75					0	0	1	0	0
MYO9A	4649	broad.mit.edu	37	15	72231235	72231235	+	Missense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr15:72231235G>C	uc002atl.3	-	16	2809	c.2336C>G	c.(2335-2337)TCT>TGT	p.S779C	MYO9A_uc010biq.2_Missense_Mutation_p.S399C|MYO9A_uc002atn.1_Missense_Mutation_p.S760C	NM_006901	NP_008832	B2RTY4	MYO9A_HUMAN	myosin IXA	779					regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction|visual perception	cytosol|integral to membrane|unconventional myosin complex	actin binding|ATP binding|GTPase activator activity|metal ion binding|motor activity			ovary(1)|pancreas(1)|skin(1)	3						CTGGAGATCAGAAAGAGGTGT	0.318000													26	106					0	0	1	0	0
GRAMD2	196996	broad.mit.edu	37	15	72460080	72460080	+	Missense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr15:72460080G>C	uc002atq.2	-	5	393	c.369C>G	c.(367-369)ATC>ATG	p.I123M	GRAMD2_uc010bis.2_Missense_Mutation_p.I123M	NM_001012642	NP_001012660	Q8IUY3	GRAM2_HUMAN	GRAM domain containing 2	123	GRAM.					integral to membrane					0						TTACTACCTTGATATCCTTGC	0.597000													17	64					0	0	1	0	0
TMEM202	338949	broad.mit.edu	37	15	72699036	72699036	+	Missense_Mutation	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr15:72699036G>A	uc002auq.2	+	3	431	c.431G>A	c.(430-432)CGA>CAA	p.R144Q	TMEM202_uc002aur.2_RNA	NM_001080462	NP_001073931	A6NGA9	TM202_HUMAN	transmembrane protein 202	144						integral to membrane				central_nervous_system(1)|skin(1)	2						ATCCTTAATCGAGGAAGCATG	0.453000													32	120					0	0	1	0	0
NEO1	4756	broad.mit.edu	37	15	73415041	73415041	+	Silent	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr15:73415041C>T	uc002avm.3	+	3	766	c.624C>T	c.(622-624)ATC>ATT	p.I208I	NEO1_uc010ukx.1_Silent_p.I208I|NEO1_uc010uky.1_Silent_p.I208I|NEO1_uc010ukz.1_5'UTR	NM_002499	NP_002490	Q92859	NEO1_HUMAN	neogenin homolog 1 precursor	208	Extracellular (Potential).|Ig-like C2-type 2.				axon guidance|cell adhesion|positive regulation of muscle cell differentiation	Golgi apparatus|integral to plasma membrane|nucleus				pancreas(1)	1						TGCTGGTTATCAGCAATGCAA	0.453000													5	146					0	0	1	0	0
NEO1	4756	broad.mit.edu	37	15	73562772	73562772	+	Missense_Mutation	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr15:73562772C>T	uc002avm.3	+	18	2976	c.2834C>T	c.(2833-2835)GCC>GTC	p.A945V	NEO1_uc010ukx.1_Missense_Mutation_p.A945V|NEO1_uc010uky.1_Missense_Mutation_p.A945V|NEO1_uc010ukz.1_Missense_Mutation_p.A369V|NEO1_uc002avn.3_Missense_Mutation_p.A594V	NM_002499	NP_002490	Q92859	NEO1_HUMAN	neogenin homolog 1 precursor	945	Extracellular (Potential).|Fibronectin type-III 5.				axon guidance|cell adhesion|positive regulation of muscle cell differentiation	Golgi apparatus|integral to plasma membrane|nucleus				pancreas(1)	1						AGTATGACAGCCCATGGGACC	0.418000													11	56					0	0	1	0	0
PML	5371	broad.mit.edu	37	15	74315461	74315461	+	Missense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr15:74315461G>C	uc002awv.2	+	3	1035	c.895G>C	c.(895-897)GAG>CAG	p.E299Q	PML_uc002awm.2_Missense_Mutation_p.E299Q|PML_uc002awl.2_Missense_Mutation_p.E299Q|PML_uc002awj.1_Missense_Mutation_p.E299Q|PML_uc002awk.2_Missense_Mutation_p.E299Q|PML_uc002awn.2_Missense_Mutation_p.E299Q|PML_uc002awo.2_Missense_Mutation_p.E299Q|PML_uc002awp.2_Missense_Mutation_p.E299Q|PML_uc002awq.2_Missense_Mutation_p.E299Q|PML_uc002awr.2_Missense_Mutation_p.E299Q|PML_uc002aws.2_Missense_Mutation_p.E299Q|PML_uc002awt.2_Missense_Mutation_p.E299Q|PML_uc002awu.2_Missense_Mutation_p.E299Q|PML_uc010ule.1_Intron|PML_uc002aww.1_Missense_Mutation_p.E214Q|PML_uc002awx.2_Missense_Mutation_p.E57Q|PML_uc002awy.2_5'Flank	NM_033238	NP_150241	P29590	PML_HUMAN	promyelocytic leukemia protein isoform 1	299					cell cycle arrest|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|DNA damage response, signal transduction resulting in induction of apoptosis|endoplasmic reticulum calcium ion homeostasis|induction of apoptosis|interferon-gamma-mediated signaling pathway|interspecies interaction between organisms|maintenance of protein location in nucleus|negative regulation of angiogenesis|negative regulation of cell growth|negative regulation of cell proliferation|negative regulation of mitotic cell cycle|negative regulation of protein ubiquitination involved in ubiquitin-dependent protein catabolic process|negative regulation of telomerase activity|negative regulation of telomere maintenance via telomerase|negative regulation of transcription, DNA-dependent|negative regulation of translation in response to oxidative stress|PML body organization|PML body organization|positive regulation of defense response to virus by host|positive regulation of histone deacetylation|protein complex assembly|protein stabilization|protein targeting|regulation of calcium ion transport into cytosol|regulation of protein phosphorylation|response to hypoxia|response to virus|transcription, DNA-dependent	cytoplasm|cytosol|early endosome membrane|extrinsic to endoplasmic reticulum membrane|insoluble fraction|nuclear matrix|nuclear membrane|nucleolus|nucleus|PML body	cobalt ion binding|DNA binding|protein binding|protein binding|protein heterodimerization activity|protein homodimerization activity|SUMO binding|transcription coactivator activity|ubiquitin protein ligase binding|zinc ion binding|zinc ion binding			central_nervous_system(2)|kidney(2)|breast(1)	5						CGAGCTGCTGGAGGCTGTGGA	0.731000			T	RARA|PAX5	APL|ALL								8	37					0	0	1	0	0
STRA6	64220	broad.mit.edu	37	15	74474749	74474749	+	Silent	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr15:74474749G>A	uc002axk.2	-	15	1535	c.1353C>T	c.(1351-1353)TTC>TTT	p.F451F	STRA6_uc002axi.2_Silent_p.F260F|STRA6_uc010ulh.1_Silent_p.F489F|STRA6_uc002axj.2_Silent_p.F490F|STRA6_uc010bji.2_Silent_p.F451F|STRA6_uc002axl.2_Silent_p.F383F|STRA6_uc002axm.2_Silent_p.F451F|STRA6_uc002axn.2_Silent_p.F442F|STRA6_uc010uli.1_Silent_p.F488F|STRA6_uc010bjj.1_RNA	NM_022369	NP_071764	Q9BX79	STRA6_HUMAN	stimulated by retinoic acid gene 6 homolog	451	Helical; (Potential).				adrenal gland development|alveolar primary septum development|developmental growth|diaphragm development|digestive tract morphogenesis|ear development|embryonic camera-type eye formation|embryonic digestive tract development|eyelid development in camera-type eye|face morphogenesis|feeding behavior|female genitalia development|kidney development|lung vasculature development|neuromuscular process|nose morphogenesis|paramesonephric duct development|positive regulation of behavior|pulmonary artery morphogenesis|pulmonary valve morphogenesis|smooth muscle tissue development|transport|uterus morphogenesis|ventricular septum development|vocal learning	integral to membrane|plasma membrane|protein complex	receptor activity			central_nervous_system(1)	1						TGAGCACCAGGAAGGCCAGGG	0.602000													9	29					0	0	1	0	0
CLK3	1198	broad.mit.edu	37	15	74922134	74922134	+	Missense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr15:74922134C>G	uc010uln.1	+	13	2288	c.1827C>G	c.(1825-1827)ATC>ATG	p.I609M	CLK3_uc002ayg.3_Missense_Mutation_p.I461M|CLK3_uc002ayh.3_Missense_Mutation_p.I240M|CLK3_uc002ayj.3_Missense_Mutation_p.I438M|CLK3_uc002ayk.3_Missense_Mutation_p.I388M|CLK3_uc002ayl.3_Missense_Mutation_p.I294M	NM_001130028	NP_001123500	P49761	CLK3_HUMAN	CDC-like kinase 3 isoform a	609	Protein kinase.					acrosomal vesicle|nucleus	ATP binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			stomach(2)	2						CCCAGCGCATCACACTGGCCG	0.597000													7	36					0	0	1	0	0
CYP1A2	1544	broad.mit.edu	37	15	75047222	75047222	+	Missense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr15:75047222G>C	uc002ayr.1	+	7	1408	c.1344G>C	c.(1342-1344)ATG>ATC	p.M448I		NM_000761	NP_000752	P05177	CP1A2_HUMAN	cytochrome P450, family 1, subfamily A,	448					alkaloid metabolic process|exogenous drug catabolic process|methylation|monocarboxylic acid metabolic process|monoterpenoid metabolic process|oxidative deethylation|oxidative demethylation|steroid catabolic process|toxin biosynthetic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	aromatase activity|caffeine oxidase activity|demethylase activity|electron carrier activity|enzyme binding|heme binding|oxygen binding			ovary(3)|breast(1)	4					Acenocoumarol(DB01418)|Acetaminophen(DB00316)|Aciclovir(DB00787)|Alosetron(DB00969)|Aminophenazone(DB01424)|Amitriptyline(DB00321)|Anagrelide(DB00261)|Azelastine(DB00972)|Bortezomib(DB00188)|Caffeine(DB00201)|Carmustine(DB00262)|Chlordiazepoxide(DB00475)|Chlorpromazine(DB00477)|Chlorzoxazone(DB00356)|Cimetidine(DB00501)|Cinacalcet(DB01012)|Ciprofloxacin(DB00537)|Clomipramine(DB01242)|Clotrimazole(DB00257)|Clozapine(DB00363)|Conjugated Estrogens(DB00286)|Cyclobenzaprine(DB00924)|Dacarbazine(DB00851)|Desloratadine(DB00967)|Diazepam(DB00829)|Dibucaine(DB00527)|Diclofenac(DB00586)|Duloxetine(DB00476)|Enoxacin(DB00467)|Esomeprazole(DB00736)|Estradiol(DB00783)|Estrone(DB00655)|Fluorouracil(DB00544)|Flutamide(DB00499)|Fluvoxamine(DB00176)|Frovatriptan(DB00998)|Grepafloxacin(DB00365)|Haloperidol(DB00502)|Hesperetin(DB01094)|Imipramine(DB00458)|Ketoconazole(DB01026)|Leflunomide(DB01097)|Levobupivacaine(DB01002)|Levofloxacin(DB01137)|Lidocaine(DB00281)|Lomefloxacin(DB00978)|Melatonin(DB01065)|Mephenytoin(DB00532)|Mexiletine(DB00379)|Mirtazapine(DB00370)|Norfloxacin(DB01059)|Nortriptyline(DB00540)|Ofloxacin(DB01165)|Olanzapine(DB00334)|Ondansetron(DB00904)|Palonosetron(DB00377)|Pantoprazole(DB00213)|Pefloxacin(DB00487)|Pimozide(DB01100)|Propafenone(DB01182)|Propranolol(DB00571)|Quinidine(DB00908)|Ramelteon(DB00980)|Ranitidine(DB00863)|Rasagiline(DB01367)|Rifampin(DB01045)|Riluzole(DB00740)|Rofecoxib(DB00533)|Ropinirole(DB00268)|Ropivacaine(DB00296)|Tacrine(DB00382)|Telithromycin(DB00976)|Terfenadine(DB00342)|Theophylline(DB00277)|Thiabendazole(DB00730)|Tizanidine(DB00697)|Tolbutamide(DB01124)|Verapamil(DB00661)|Warfarin(DB00682)|Zileuton(DB00744)|Zolmitriptan(DB00315)	GTGAGAAGATGATGCTGTTTG	0.582000													41	145					0	0	1	0	0
SIN3A	25942	broad.mit.edu	37	15	75692404	75692404	+	Missense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr15:75692404G>C	uc002bai.2	-	12	2090	c.1831C>G	c.(1831-1833)CGT>GGT	p.R611G	SIN3A_uc002baj.2_Missense_Mutation_p.R611G|SIN3A_uc010uml.1_Missense_Mutation_p.R611G	NM_015477	NP_056292	Q96ST3	SIN3A_HUMAN	transcriptional co-repressor Sin3A	611	Interactions with SUDS3 and SAP130.|Interaction with NCOR1 (By similarity).				blood coagulation|cellular lipid metabolic process|negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleolus|Sin3 complex	protein binding			skin(3)|ovary(1)|lung(1)	5						TCTTCACAACGATAAATATGT	0.438000													35	141					0	0	1	0	0
CSPG4	1464	broad.mit.edu	37	15	75980337	75980337	+	Silent	SNP	G	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr15:75980337G>T	uc002baw.2	-	3	3162	c.3069C>A	c.(3067-3069)ATC>ATA	p.I1023I		NM_001897	NP_001888	Q6UVK1	CSPG4_HUMAN	chondroitin sulfate proteoglycan 4 precursor	1023	Interaction with COL5A1 (By similarity).|Extracellular (Potential).|Gly/Ser-rich (glycosaminoglycan attachment domain).|CSPG 6.|Interaction with COL6A2 (By similarity).				angiogenesis|cell differentiation|intracellular signal transduction|positive regulation of peptidyl-tyrosine phosphorylation|tissue remodeling	apical plasma membrane|cell surface|integral to plasma membrane|intracellular|lamellipodium membrane	protein kinase binding|signal transducer activity			ovary(2)|pancreas(1)	3						AGATCCGGCTGATGGTCTGCA	0.662000													25	104					1.64293e-13	1.7073e-13	1	1	0
CSPG4	1464	broad.mit.edu	37	15	75981898	75981898	+	Missense_Mutation	SNP	T	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr15:75981898T>A	uc002baw.2	-	3	1601	c.1508A>T	c.(1507-1509)AAG>ATG	p.K503M		NM_001897	NP_001888	Q6UVK1	CSPG4_HUMAN	chondroitin sulfate proteoglycan 4 precursor	503	Extracellular (Potential).|CSPG 1.|Globular or compact configuration stabilized by disulfide bonds.|Neurite growth inhibition (By similarity).				angiogenesis|cell differentiation|intracellular signal transduction|positive regulation of peptidyl-tyrosine phosphorylation|tissue remodeling	apical plasma membrane|cell surface|integral to plasma membrane|intracellular|lamellipodium membrane	protein kinase binding|signal transducer activity			ovary(2)|pancreas(1)	3						GAAGCGGGCCTTGCGGTTCAC	0.652000													34	85					0	0	1	0	0
TBC1D2B	23102	broad.mit.edu	37	15	78305568	78305568	+	Missense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr15:78305568G>C	uc002bcy.3	-	9	1867	c.1867C>G	c.(1867-1869)CTC>GTC	p.L623V	TBC1D2B_uc010bla.2_Missense_Mutation_p.L623V|TBC1D2B_uc002bda.2_Missense_Mutation_p.L75V	NM_144572	NP_653173	Q9UPU7	TBD2B_HUMAN	TBC1 domain family, member 2B isoform a	623						intracellular	protein binding|Rab GTPase activator activity			ovary(1)|large_intestine(1)|breast(1)	3						GTGAGGTAGAGAGTCTTCAGA	0.448000													21	60					0	0	1	0	0
IREB2	3658	broad.mit.edu	37	15	78775677	78775677	+	Silent	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr15:78775677G>C	uc002bdr.2	+	11	1476	c.1314G>C	c.(1312-1314)CTG>CTC	p.L438L	IREB2_uc010unb.1_Silent_p.L188L	NM_004136	NP_004127	P48200	IREB2_HUMAN	iron-responsive element binding protein 2	438							4 iron, 4 sulfur cluster binding|metal ion binding|protein binding				0				UCEC - Uterine corpus endometrioid carcinoma (272;0.232)		AGATTAATCTGAATTCAATAG	0.358000													7	69					0	0	1	0	0
ZFAND6	54469	broad.mit.edu	37	15	80423554	80423554	+	Missense_Mutation	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr15:80423554G>A	uc002bfe.1	+	6	708	c.397G>A	c.(397-399)GAA>AAA	p.E133K	ZFAND6_uc002bff.1_Missense_Mutation_p.E133K|ZFAND6_uc002bfg.1_Missense_Mutation_p.E121K|ZFAND6_uc002bfh.1_Missense_Mutation_p.E133K|ZFAND6_uc002bfi.1_Missense_Mutation_p.E133K	NM_019006	NP_061879	Q6FIF0	ZFAN6_HUMAN	zinc finger, AN1-type domain 6	133							DNA binding|zinc ion binding				0						GCAGCCATCTGAAGAGCAAAG	0.388000													15	103					0	0	1	0	0
EFTUD1	79631	broad.mit.edu	37	15	82533678	82533678	+	Nonsense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr15:82533678G>C	uc002bgt.1	-	5	480	c.311C>G	c.(310-312)TCA>TGA	p.S104*	EFTUD1_uc002bgu.1_Nonsense_Mutation_p.S53*	NM_024580	NP_078856	Q7Z2Z2	ETUD1_HUMAN	elongation factor Tu GTP binding domain	104					mature ribosome assembly		GTP binding|GTPase activity|ribosome binding|translation elongation factor activity			ovary(1)	1						AACAGCGGTTGATACTTCTGA	0.403000													19	60					0	0	1	0	0
WDR73	84942	broad.mit.edu	37	15	85191128	85191128	+	Missense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr15:85191128C>G	uc002bkw.2	-	5	361	c.345G>C	c.(343-345)GAG>GAC	p.E115D	WDR73_uc002bkv.2_RNA|WDR73_uc002bkx.2_RNA|WDR73_uc010upa.1_Missense_Mutation_p.E115D	NM_032856	NP_116245	Q6P4I2	WDR73_HUMAN	WD repeat domain 73	115	WD 1.										0						CACCACTGTCCTCTGCAACCT	0.483000													11	50					0	0	1	0	0
ACAN	176	broad.mit.edu	37	15	89391202	89391202	+	Silent	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr15:89391202C>T	uc010upo.1	+	9	2039	c.1665C>T	c.(1663-1665)GTC>GTT	p.V555V	ACAN_uc002bmx.2_Silent_p.V555V|ACAN_uc010upp.1_Silent_p.V555V|ACAN_uc002bna.2_RNA	NM_013227	NP_037359	E7EX88	E7EX88_HUMAN	aggrecan isoform 2 precursor	555					cell adhesion		hyaluronic acid binding|sugar binding			ovary(2)|central_nervous_system(1)	3	Lung NSC(78;0.0392)|all_lung(78;0.077)		BRCA - Breast invasive adenocarcinoma(143;0.146)			GCCCAGGGGTCAGGACCTATG	0.567000													45	114					0	0	1	0	0
POLG	5428	broad.mit.edu	37	15	89862178	89862178	+	Missense_Mutation	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr15:89862178G>A	uc002bns.3	-	20	3539	c.3257C>T	c.(3256-3258)TCG>TTG	p.S1086L	POLG_uc002bnr.3_Missense_Mutation_p.S1086L	NM_002693	NP_002684	P54098	DPOG1_HUMAN	DNA-directed DNA polymerase gamma	1086					base-excision repair, gap-filling|cell death|DNA-dependent DNA replication	mitochondrial nucleoid	DNA binding|DNA-directed DNA polymerase activity|protease binding			ovary(1)|lung(1)	2	Lung NSC(78;0.0472)|all_lung(78;0.089)		STAD - Stomach adenocarcinoma(125;0.165)			CTGGACAGCCGAGGGCTCCAG	0.572000								DNA_polymerases_(catalytic_subunits)					11	84					0	0	1	0	0
ANPEP	290	broad.mit.edu	37	15	90349434	90349434	+	Silent	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr15:90349434G>A	uc002bop.3	-	2	673	c.381C>T	c.(379-381)CTC>CTT	p.L127L		NM_001150	NP_001141	P15144	AMPN_HUMAN	membrane alanine aminopeptidase precursor	127	Extracellular.|Metalloprotease.				angiogenesis|cell differentiation|interspecies interaction between organisms	cytosol|ER-Golgi intermediate compartment|integral to plasma membrane	aminopeptidase activity|metallopeptidase activity|receptor activity|zinc ion binding			ovary(3)|skin(1)	4	Lung NSC(78;0.0221)|all_lung(78;0.0448)		BRCA - Breast invasive adenocarcinoma(143;0.0146)|KIRC - Kidney renal clear cell carcinoma(17;0.0286)|Kidney(142;0.0514)|STAD - Stomach adenocarcinoma(125;0.169)		Ezetimibe(DB00973)	GGGTGTAGTTGAGCTTCTTGC	0.607000													17	62					0	0	1	0	0
BLM	641	broad.mit.edu	37	15	91304065	91304065	+	Missense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr15:91304065G>C	uc002bpr.2	+	7	1559	c.1462G>C	c.(1462-1464)GAA>CAA	p.E488Q	BLM_uc010uqh.1_Missense_Mutation_p.E488Q|BLM_uc010uqi.1_Missense_Mutation_p.E113Q|BLM_uc010bnx.2_Missense_Mutation_p.E488Q|BLM_uc002bps.1_Missense_Mutation_p.E50Q	NM_000057	NP_000048	P54132	BLM_HUMAN	Bloom syndrome protein	488					double-strand break repair via homologous recombination|G2 phase of mitotic cell cycle|G2/M transition DNA damage checkpoint|negative regulation of cell division|positive regulation of transcription, DNA-dependent|protein oligomerization|regulation of cyclin-dependent protein kinase activity|replication fork processing|replication fork protection|response to X-ray	cytoplasm|lateral element|nuclear matrix|nucleolus|PML body	ATP binding|bubble DNA binding|DNA strand annealing activity|four-way junction helicase activity|G-quadruplex DNA binding|p53 binding			ovary(3)|skin(2)|breast(1)	6	Lung NSC(78;0.0875)|all_lung(78;0.109)		Lung(145;0.189)			GAATCTTTTTGAAAGGCCTTT	0.408000			Mis|N|F			leukemia|lymphoma|skin squamous cell |other cancers		Genes_defective_in_diseases_associated_with_sensitivity_to_DNA_damaging_agents	Bloom_syndrome				39	131					0	0	1	0	0
SLCO3A1	28232	broad.mit.edu	37	15	92459366	92459366	+	Silent	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr15:92459366G>C	uc002bqx.2	+	2	525	c.324G>C	c.(322-324)CTG>CTC	p.L108L	SLCO3A1_uc002bqy.2_Silent_p.L108L|SLCO3A1_uc010boc.1_RNA|SLCO3A1_uc002bqz.1_Silent_p.L50L	NM_013272	NP_037404	Q9UIG8	SO3A1_HUMAN	solute carrier organic anion transporter family,	108	Helical; Name=3; (Potential).				sodium-independent organic anion transport	integral to membrane|plasma membrane	sodium-independent organic anion transmembrane transporter activity			skin(1)	1	Lung NSC(78;0.0158)|all_lung(78;0.0255)		BRCA - Breast invasive adenocarcinoma(143;0.0841)			GGCCGCGCCTGATCGGCTGCG	0.682000													3	10					0	0	1	0	0
MCTP2	55784	broad.mit.edu	37	15	94841724	94841724	+	Missense_Mutation	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr15:94841724C>T	uc002btj.2	+	1	295	c.230C>T	c.(229-231)TCG>TTG	p.S77L	MCTP2_uc010urg.1_Missense_Mutation_p.S77L|MCTP2_uc002bti.2_Missense_Mutation_p.S77L|MCTP2_uc010boj.2_5'UTR|MCTP2_uc010bok.2_Missense_Mutation_p.S77L|MCTP2_uc002btg.3_Missense_Mutation_p.S77L|MCTP2_uc002bth.3_Missense_Mutation_p.S77L	NM_018349	NP_060819	Q6DN12	MCTP2_HUMAN	multiple C2 domains, transmembrane 2 isoform 1	77					calcium-mediated signaling	integral to membrane|membrane fraction	calcium ion binding			ovary(1)|pancreas(1)|skin(1)	3	Lung NSC(78;0.0821)|all_lung(78;0.148)		BRCA - Breast invasive adenocarcinoma(143;0.0323)|OV - Ovarian serous cystadenocarcinoma(32;0.0593)			TCCTACACCTCGGTGCCCAGC	0.592000													52	132					0	0	1	0	0
PCSK6	5046	broad.mit.edu	37	15	101971654	101971654	+	Missense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr15:101971654C>G	uc002bwy.2	-	5	842	c.528G>C	c.(526-528)AAG>AAC	p.K176N	PCSK6_uc010bpd.2_Missense_Mutation_p.K46N|PCSK6_uc010bpe.2_Missense_Mutation_p.K176N|PCSK6_uc002bxa.2_Missense_Mutation_p.K176N|PCSK6_uc002bxb.2_Missense_Mutation_p.K176N|PCSK6_uc002bxc.1_Missense_Mutation_p.K176N|PCSK6_uc002bxd.1_Missense_Mutation_p.K176N|PCSK6_uc002bxe.2_Missense_Mutation_p.K176N|PCSK6_uc002bxg.1_Missense_Mutation_p.K176N	NM_002570	NP_002561	P29122	PCSK6_HUMAN	paired basic amino acid cleaving system 4	176	Catalytic.				glycoprotein metabolic process|nerve growth factor processing|nerve growth factor production|nerve growth factor receptor signaling pathway|regulation of BMP signaling pathway|secretion by cell	cell surface|endomembrane system|endoplasmic reticulum|extracellular matrix|extracellular space|Golgi lumen|membrane|soluble fraction	eukaryotic cell surface binding|heparin binding|nerve growth factor binding|serine-type endopeptidase activity			pancreas(2)	2	Lung NSC(78;0.00102)|all_lung(78;0.00128)|Melanoma(26;0.00505)		OV - Ovarian serous cystadenocarcinoma(32;0.000803)|LUSC - Lung squamous cell carcinoma(107;0.187)|Lung(145;0.23)			AGCGACTGTTCTTGTCGCCAC	0.547000													7	21					0	0	1	0	0
TMEM204	79652	broad.mit.edu	37	16	1591971	1591971	+	Silent	SNP	C	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr16:1591971C>A	uc002cmc.2	+	3	728	c.330C>A	c.(328-330)CTC>CTA	p.L110L	IFT140_uc002clz.2_Intron|IFT140_uc002cmb.2_Intron|TMEM204_uc002cmd.2_Silent_p.L110L|TMEM204_uc010brr.1_Silent_p.L110L	NM_024600	NP_078876	Q9BSN7	TM204_HUMAN	transmembrane protein 204	110	Helical; (Potential).				response to stress	adherens junction|integral to membrane					0		Hepatocellular(780;0.219)				CGGCCGCGCTCACCGCAGGCC	0.687000													14	53					3.52763e-06	3.60073e-06	1	1	0
CRAMP1L	57585	broad.mit.edu	37	16	1715111	1715111	+	Silent	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr16:1715111C>T	uc010uvh.1	+	13	2724	c.2724C>T	c.(2722-2724)TTC>TTT	p.F908F	CRAMP1L_uc002cmf.2_RNA	NM_020825	NP_065876	Q96RY5	CRML_HUMAN	Crm, cramped-like	908						nucleus	DNA binding				0						TTTGTTCCTTCTCCATCCTGT	0.502000													7	31					0	0	1	0	0
PKD1	5310	broad.mit.edu	37	16	2164353	2164353	+	Missense_Mutation	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr16:2164353C>T	uc002cos.1	-	11	2880	c.2671G>A	c.(2671-2673)GAT>AAT	p.D891N	PKD1_uc002cot.1_Missense_Mutation_p.D891N	NM_001009944	NP_001009944	P98161	PKD1_HUMAN	polycystin 1 isoform 1 precursor	891	Extracellular (Potential).|PKD 3.				calcium-independent cell-matrix adhesion|homophilic cell adhesion|neuropeptide signaling pathway	basolateral plasma membrane|integral to plasma membrane	protein domain specific binding|sugar binding			central_nervous_system(2)|skin(1)	3						AACAGGGTATCGTTGGTCTCC	0.667000													14	34					0	0	1	0	0
CASKIN1	57524	broad.mit.edu	37	16	2236729	2236729	+	Missense_Mutation	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr16:2236729C>T	uc010bsg.1	-	10	1059	c.1027G>A	c.(1027-1029)GAG>AAG	p.E343K		NM_020764	NP_065815	Q8WXD9	CSKI1_HUMAN	CASK interacting protein 1	343	SH3.				signal transduction	cytoplasm				skin(2)	2						ACAATGGCCTCGCCCAGGGAG	0.672000													19	72					0	0	1	0	0
SRRM2	23524	broad.mit.edu	37	16	2808478	2808478	+	Missense_Mutation	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr16:2808478C>T	uc002crk.2	+	5	1072	c.523C>T	c.(523-525)CGG>TGG	p.R175W	SRRM2_uc002crj.1_Missense_Mutation_p.R79W|SRRM2_uc002crl.1_Missense_Mutation_p.R175W|SRRM2_uc010bsu.1_Missense_Mutation_p.R79W	NM_016333	NP_057417	Q9UQ35	SRRM2_HUMAN	splicing coactivator subunit SRm300	175						Cajal body|catalytic step 2 spliceosome|nuclear speck	C2H2 zinc finger domain binding|protein N-terminus binding|RNA binding			ovary(1)|pancreas(1)|central_nervous_system(1)|skin(1)	4						TAGCCTTGTTCGGGAGTCTAG	0.343000													50	196					0	0	1	0	0
SRRM2	23524	broad.mit.edu	37	16	2813960	2813960	+	Missense_Mutation	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr16:2813960C>T	uc002crk.2	+	11	3980	c.3431C>T	c.(3430-3432)TCA>TTA	p.S1144L	SRRM2_uc002crj.1_Missense_Mutation_p.S1048L|SRRM2_uc002crl.1_Missense_Mutation_p.S1144L|SRRM2_uc010bsu.1_Missense_Mutation_p.S1048L	NM_016333	NP_057417	Q9UQ35	SRRM2_HUMAN	splicing coactivator subunit SRm300	1144	Ser-rich.					Cajal body|catalytic step 2 spliceosome|nuclear speck	C2H2 zinc finger domain binding|protein N-terminus binding|RNA binding			ovary(1)|pancreas(1)|central_nervous_system(1)|skin(1)	4						GACTCTTCTTCATATCCTACA	0.463000													4	172					0	0	1	0	0
ZNF434	54925	broad.mit.edu	37	16	3433401	3433401	+	Silent	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr16:3433401G>C	uc002cuz.2	-	6	1711	c.909C>G	c.(907-909)CTC>CTG	p.L303L	ZNF434_uc002cux.3_Silent_p.L514L|ZNF434_uc010uwx.1_Silent_p.L226L|ZNF434_uc002cuy.3_Silent_p.L226L	NM_017810	NP_060280	Q9NX65	ZN434_HUMAN	zinc finger protein 434	303					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)	2						TTTCCAGTTTGAGCGCTGGCT	0.478000													30	95					0	0	1	0	0
CREBBP	1387	broad.mit.edu	37	16	3900459	3900459	+	Missense_Mutation	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr16:3900459G>A	uc002cvv.2	-	2	841	c.637C>T	c.(637-639)CTT>TTT	p.L213F	CREBBP_uc002cvw.2_Missense_Mutation_p.L213F	NM_004380	NP_004371	Q92793	CBP_HUMAN	CREB binding protein isoform a	213					cellular lipid metabolic process|homeostatic process|interspecies interaction between organisms|N-terminal peptidyl-lysine acetylation|protein complex assembly|response to hypoxia	cytoplasm|nuclear body	histone acetyltransferase activity|MyoD binding|p53 binding|sequence-specific DNA binding transcription factor activity|signal transducer activity|transcription coactivator activity|zinc ion binding			haematopoietic_and_lymphoid_tissue(97)|ovary(14)|lung(6)|skin(6)|breast(2)|NS(1)|pancreas(1)	127		Ovarian(90;0.0266)		OV - Ovarian serous cystadenocarcinoma(1;3.54e-05)		GCAGCCCCAAGAGATCCATTC	0.562000			T|N|F|Mis|O	MLL|MORF|RUNXBP2	ALL|AML|DLBCL|B-NHL 		Rubinstein-Taybi syndrome		Rubinstein-Taybi_syndrome				20	70					0	0	1	0	0
ADCY9	115	broad.mit.edu	37	16	4016742	4016742	+	Silent	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr16:4016742C>T	uc002cvx.2	-	11	3635	c.3096G>A	c.(3094-3096)CTG>CTA	p.L1032L		NM_001116	NP_001107	O60503	ADCY9_HUMAN	adenylate cyclase 9	1032	Cytoplasmic (Potential).				activation of adenylate cyclase activity by G-protein signaling pathway|activation of phospholipase C activity|activation of protein kinase A activity|cellular response to glucagon stimulus|energy reserve metabolic process|inhibition of adenylate cyclase activity by G-protein signaling pathway|nerve growth factor receptor signaling pathway|synaptic transmission|transmembrane transport|water transport	integral to plasma membrane	adenylate cyclase activity|ATP binding|metal ion binding			ovary(4)|large_intestine(1)|central_nervous_system(1)	6						TGATGTTCCTCAGCAGCCAGT	0.577000													4	160					0	0	1	0	0
GLIS2	84662	broad.mit.edu	37	16	4383413	4383413	+	Missense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr16:4383413G>C	uc002cwc.1	+	2	295	c.238G>C	c.(238-240)GAC>CAC	p.D80H		NM_032575	NP_115964	Q9BZE0	GLIS2_HUMAN	GLIS family zinc finger 2	80	Transcription activation (By similarity).|Interaction with CTNND1 (By similarity).				cell differentiation|negative regulation of sequence-specific DNA binding transcription factor activity|negative regulation of transcription from RNA polymerase II promoter|nervous system development	cytoplasm|nuclear speck	RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription|transcription regulatory region DNA binding|zinc ion binding				0						CCCTCTCGTGGACCTCAGCCT	0.647000													9	46					0	0	1	0	0
GLIS2	84662	broad.mit.edu	37	16	4383476	4383476	+	Missense_Mutation	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr16:4383476G>A	uc002cwc.1	+	2	358	c.301G>A	c.(301-303)GAG>AAG	p.E101K		NM_032575	NP_115964	Q9BZE0	GLIS2_HUMAN	GLIS family zinc finger 2	101	Transcription activation (By similarity).|Interaction with CTNND1 (By similarity).				cell differentiation|negative regulation of sequence-specific DNA binding transcription factor activity|negative regulation of transcription from RNA polymerase II promoter|nervous system development	cytoplasm|nuclear speck	RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription|transcription regulatory region DNA binding|zinc ion binding				0						GCTGTCCCCCGAGCGCCAGGG	0.587000													9	21					0	0	1	0	0
CORO7	79585	broad.mit.edu	37	16	4412623	4412623	+	Missense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr16:4412623C>G	uc002cwh.3	-	15	1512	c.1392G>C	c.(1390-1392)CAG>CAC	p.Q464H	CORO7_uc002cwe.2_RNA|CORO7_uc002cwf.2_Missense_Mutation_p.Q464H|CORO7_uc002cwg.3_Missense_Mutation_p.Q244H|CORO7_uc010uxh.1_Missense_Mutation_p.Q446H|CORO7_uc010uxi.1_Missense_Mutation_p.Q379H|CORO7_uc002cwi.1_Missense_Mutation_p.Q244H|CORO7_uc010uxj.1_RNA|CORO7_uc010btp.1_Missense_Mutation_p.Q244H	NM_024535	NP_078811	P57737	CORO7_HUMAN	coronin 7	464						cytoplasmic membrane-bounded vesicle|cytosol|Golgi membrane|integral to membrane of membrane fraction|soluble fraction					0						CCAGCAGGCTCTGCAGCGACC	0.672000													17	65					0	0	1	0	0
SEPT12	124404	broad.mit.edu	37	16	4837502	4837502	+	Missense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr16:4837502C>G	uc002cxq.2	-	2	286	c.145G>C	c.(145-147)GAG>CAG	p.E49Q	SEPT12_uc002cxr.2_Missense_Mutation_p.E49Q|SEPT12_uc010bty.2_RNA|uc002cxt.2_5'Flank	NM_144605	NP_653206	Q8IYM1	SEP12_HUMAN	septin 12 isoform 2	49					cell cycle|cell division	cleavage furrow|midbody|perinuclear region of cytoplasm|septin complex|spindle|stress fiber	GDP binding|GTP binding|phosphatidylinositol binding|protein homodimerization activity			skin(1)	1						ATGTTGAACTCAAACCCCATC	0.483000													4	166					0	0	1	0	0
SEC14L5	9717	broad.mit.edu	37	16	5058617	5058617	+	Missense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr16:5058617C>G	uc002cye.2	+	14	1948	c.1768C>G	c.(1768-1770)CCC>GCC	p.P590A		NM_014692	NP_055507	O43304	S14L5_HUMAN	SEC14-like 5	590	GOLD.					integral to membrane|intracellular	transporter activity				0						TGTGGAGGCTCCCCTTGTCTG	0.512000													16	86					0	0	1	0	0
ALG1	56052	broad.mit.edu	37	16	5134874	5134874	+	Missense_Mutation	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr16:5134874G>A	uc002cym.2	+	13	1428	c.1387G>A	c.(1387-1389)GAC>AAC	p.D463N	ALG1_uc002cyj.2_Missense_Mutation_p.D352N|ALG1_uc002cyn.2_Missense_Mutation_p.D464N|ALG1_uc010bue.2_Missense_Mutation_p.D352N|ALG1_uc010uxy.1_Missense_Mutation_p.D352N|FAM86A_uc002cyo.2_3'UTR|FAM86A_uc002cyp.2_3'UTR	NM_019109	NP_061982	Q9BT22	ALG1_HUMAN	beta-1,4-mannosyltransferase	463	Lumenal (Potential).				dolichol-linked oligosaccharide biosynthetic process|lipopolysaccharide biosynthetic process|post-translational protein modification|protein N-linked glycosylation via asparagine	endoplasmic reticulum membrane|integral to membrane	chitobiosyldiphosphodolichol beta-mannosyltransferase activity			upper_aerodigestive_tract(1)|ovary(1)	2		Ovarian(90;0.0164)				TTTGGTTATGGACACATAACT	0.587000													7	54					0	0	1	0	0
CPPED1	55313	broad.mit.edu	37	16	12798556	12798556	+	Missense_Mutation	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr16:12798556C>T	uc002dca.3	-	3	751	c.640G>A	c.(640-642)GAC>AAC	p.D214N	CPPED1_uc002dcb.3_Intron|CPPED1_uc002dbz.3_RNA	NM_018340	NP_060810	Q9BRF8	CPPED_HUMAN	calcineurin-like phosphoesterase domain	214							hydrolase activity|metal ion binding				0						TCGTCCTCGTCGATGCTCTCC	0.602000													28	91					0	0	1	0	0
PARN	5073	broad.mit.edu	37	16	14540841	14540841	+	Missense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr16:14540841C>G	uc010uzd.1	-	23	1910	c.1768G>C	c.(1768-1770)GAG>CAG	p.E590Q	PARN_uc010uzc.1_Missense_Mutation_p.E529Q|PARN_uc010uze.1_Missense_Mutation_p.E544Q|PARN_uc010uzf.1_Missense_Mutation_p.E415Q	NM_002582	NP_002573	O95453	PARN_HUMAN	poly(A)-specific ribonuclease (deadenylation	590					female gamete generation|nuclear-transcribed mRNA catabolic process, nonsense-mediated decay|nuclear-transcribed mRNA poly(A) tail shortening|RNA modification	cytosol|nucleolus	metal ion binding|mRNA 3'-UTR binding|nucleotide binding|poly(A)-specific ribonuclease activity|protein binding			ovary(2)	2						TGCTCAAGCTCAGTGTCGGAA	0.493000													4	120					0	0	1	0	0
ABCC6	368	broad.mit.edu	37	16	16255325	16255325	+	Silent	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr16:16255325G>C	uc002den.3	-	25	3640	c.3603C>G	c.(3601-3603)CTC>CTG	p.L1201L	ABCC6_uc010bvo.2_RNA	NM_001171	NP_001162	O95255	MRP6_HUMAN	ATP-binding cassette, sub-family C, member 6	1201	ABC transmembrane type-1 2.|Helical; Name=17; (By similarity).				response to drug|visual perception	integral to membrane|plasma membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances			skin(2)|ovary(1)	3				UCEC - Uterine corpus endometrioid carcinoma (3;0.123)		AGAAGCCCACGAGGCCAGCAC	0.622000													16	57					0	0	1	0	0
ABCC6	368	broad.mit.edu	37	16	16282745	16282745	+	Silent	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr16:16282745G>C	uc002den.3	-	13	1759	c.1722C>G	c.(1720-1722)CTC>CTG	p.L574L	ABCC6_uc010bvo.2_RNA|ABCC6_uc010uzz.1_Silent_p.L586L	NM_001171	NP_001162	O95255	MRP6_HUMAN	ATP-binding cassette, sub-family C, member 6	574	Extracellular (By similarity).|ABC transmembrane type-1 1.				response to drug|visual perception	integral to membrane|plasma membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances			skin(2)|ovary(1)	3				UCEC - Uterine corpus endometrioid carcinoma (3;0.123)		TGAGGATGTTGAGAACTGTGA	0.587000													11	36					0	0	1	0	0
ABCC6P1	653190	broad.mit.edu	37	16	18602481	18602481	+	Missense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr16:18602481G>C	uc002dfg.2	+	8	879	c.679G>C	c.(679-681)GAG>CAG	p.E227Q	ABCC6P1_uc010vam.1_Missense_Mutation_p.E170Q	NR_003569				SubName: Full=cDNA FLJ51267, highly similar to Multidrug resistance-associated protein 6;												0						GGAGGCTCCAGAGACTGAGCC	0.557000													11	33					0	0	1	0	0
DNAH3	55567	broad.mit.edu	37	16	21152008	21152008	+	Missense_Mutation	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr16:21152008G>A	uc010vbe.1	-	5	545	c.545C>T	c.(544-546)TCA>TTA	p.S182L	DNAH3_uc002die.2_Missense_Mutation_p.S153L	NM_017539	NP_060009	Q8TD57	DYH3_HUMAN	dynein, axonemal, heavy chain 3	182	Stem (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			ovary(10)|skin(3)|large_intestine(2)|central_nervous_system(2)|upper_aerodigestive_tract(1)	18				GBM - Glioblastoma multiforme(48;0.207)		TGAGAAGATTGACGTCTTGAA	0.493000													6	96					0	0	1	0	0
RRN3P1	730092	broad.mit.edu	37	16	21812093	21812093	+	Silent	SNP	G	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr16:21812093G>T	uc010vbl.1	-	9	767	c.270C>A	c.(268-270)ATC>ATA	p.I90I	uc002diq.3_Intron	NR_003370				SubName: Full=Putative uncharacterized protein ENSP00000219758;												0						CCTGCCTGATGATGGCAGGAT	0.373000													16	103					5.35356e-11	5.52444e-11	1	1	0
SCNN1G	6340	broad.mit.edu	37	16	23224211	23224211	+	Missense_Mutation	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr16:23224211C>T	uc002dlm.1	+	10	1566	c.1427C>T	c.(1426-1428)TCG>TTG	p.S476L		NM_001039	NP_001030	P51170	SCNNG_HUMAN	sodium channel, nonvoltage-gated 1, gamma	476	Extracellular (By similarity).				excretion|sensory perception of taste	apical plasma membrane|integral to plasma membrane	ligand-gated sodium channel activity|WW domain binding			ovary(2)|skin(2)|large_intestine(1)|pancreas(1)	6				GBM - Glioblastoma multiforme(48;0.0366)	Amiloride(DB00594)|Triamterene(DB00384)	TCTGTGGTTTCGGAGGTAAGT	0.577000													10	45					0	0	1	0	0
XPO6	23214	broad.mit.edu	37	16	28192332	28192332	+	Silent	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr16:28192332G>C	uc002dpa.1	-	2	525	c.24C>G	c.(22-24)CTC>CTG	p.L8L	XPO6_uc002dpb.1_5'UTR|XPO6_uc010vcp.1_Silent_p.L8L	NM_015171	NP_055986	Q96QU8	XPO6_HUMAN	exportin 6	8					protein export from nucleus		protein binding|protein transporter activity			ovary(1)|skin(1)	2						CCAATGCCCTGAGAGAGGCTT	0.388000													21	43					0	0	1	0	0
SLC7A5P1	81893	broad.mit.edu	37	16	29624680	29624680	+	Silent	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr16:29624680G>C	uc002dtl.1	-	1	359	c.282C>G	c.(280-282)GTC>GTG	p.V94V	LOC440354_uc002dsp.3_RNA|uc002dtf.2_Intron|BOLA2_uc010bzb.1_Intron	NR_002593				RecName: Full=Putative L-type amino acid transporter 1-like protein MMAA; AltName: Full=hLAT1 3-transmembrane protein MMAA;          Short=hLAT1 3TM MMAA;												0						CGATGGAGAAGACGCCGCACG	0.687000													6	21					0	0	1	0	0
SEZ6L2	26470	broad.mit.edu	37	16	29883830	29883830	+	Missense_Mutation	SNP	G	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr16:29883830G>T	uc002duq.3	-	15	2746	c.2506C>A	c.(2506-2508)CCA>ACA	p.P836T	uc002dtf.2_Intron|BOLA2_uc010bzb.1_Intron|SEZ6L2_uc002dup.3_Missense_Mutation_p.P779T|SEZ6L2_uc002dur.3_Missense_Mutation_p.P766T|SEZ6L2_uc002dus.3_Missense_Mutation_p.P735T|SEZ6L2_uc010vec.1_Missense_Mutation_p.P849T|SEZ6L2_uc010ved.1_Missense_Mutation_p.P805T	NM_201575	NP_963869	Q6UXD5	SE6L2_HUMAN	seizure related 6 homolog (mouse)-like 2 isoform	836	Extracellular (Potential).					endoplasmic reticulum membrane|integral to membrane|plasma membrane				ovary(1)|skin(1)	2						TGCCGTGATGGATCTGTGGTC	0.632000													15	113					1.96292e-10	2.02255e-10	1	1	0
RNF40	9810	broad.mit.edu	37	16	30776605	30776605	+	Missense_Mutation	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr16:30776605G>A	uc002dzq.2	+	7	998	c.875G>A	c.(874-876)CGA>CAA	p.R292Q	RNF40_uc010caa.2_Missense_Mutation_p.R292Q|RNF40_uc010cab.2_Missense_Mutation_p.R292Q|RNF40_uc010vfa.1_Intron|RNF40_uc002dzr.2_Missense_Mutation_p.R292Q|RNF40_uc010vfb.1_Intron|RNF40_uc010vfc.1_5'Flank	NM_014771	NP_055586	O75150	BRE1B_HUMAN	ring finger protein 40	292	Potential.				histone H2B ubiquitination|histone monoubiquitination|ubiquitin-dependent protein catabolic process	nucleus|synaptosome|ubiquitin ligase complex	protein homodimerization activity|ubiquitin protein ligase binding|zinc ion binding			central_nervous_system(1)	1			Colorectal(24;0.198)			CTGCGGAAGCGAGAGCAAAAG	0.597000													23	65					0	0	1	0	0
ZNF646	9726	broad.mit.edu	37	16	31089929	31089929	+	Missense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr16:31089929G>C	uc002eap.2	+	2	2573	c.2284G>C	c.(2284-2286)GAA>CAA	p.E762Q		NM_014699	NP_055514	O15015	ZN646_HUMAN	zinc finger protein 646	762					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|protein binding|zinc ion binding			breast(2)	2						GGAAGGACTGGAAAGGAAGGA	0.532000													38	132					0	0	1	0	0
ZNF646	9726	broad.mit.edu	37	16	31090025	31090025	+	Missense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr16:31090025G>C	uc002eap.2	+	2	2669	c.2380G>C	c.(2380-2382)GAC>CAC	p.D794H		NM_014699	NP_055514	O15015	ZN646_HUMAN	zinc finger protein 646	794					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|protein binding|zinc ion binding			breast(2)	2						GGTGGATGAAGACCAGAAGCC	0.572000													30	101					0	0	1	0	0
ZNF720	124411	broad.mit.edu	37	16	31733961	31733961	+	Silent	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr16:31733961C>T	uc002ecn.3	+	2	222	c.18C>T	c.(16-18)TTC>TTT	p.F6F	ZNF720_uc010vfs.1_5'UTR|ZNF720_uc002eco.2_Intron|ZNF720_uc002ecp.1_Intron|ZNF720_uc002ecq.2_Silent_p.F8F	NM_001130913	NP_001124385	Q7Z2F6	ZN720_HUMAN	zinc finger protein 720	6	KRAB.				regulation of transcription, DNA-dependent	intracellular	nucleic acid binding				0						TGTTGACATTCAGGGATGTGG	0.433000													17	84					0	0	1	0	0
NETO2	81831	broad.mit.edu	37	16	47143459	47143459	+	Missense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr16:47143459C>G	uc002eer.1	-	7	1203	c.818G>C	c.(817-819)CGA>CCA	p.R273P	NETO2_uc002eeq.1_Missense_Mutation_p.R46P|NETO2_uc010vgf.1_Missense_Mutation_p.R130P|NETO2_uc002ees.1_Missense_Mutation_p.R266P	NM_018092	NP_060562	Q8NC67	NETO2_HUMAN	neuropilin- and tolloid-like protein 2	273	Extracellular (Potential).|CUB 2.					integral to membrane	receptor activity				0		all_cancers(37;0.00114)|all_lung(18;0.00432)|Lung NSC(13;0.0384)|Breast(268;0.174)				TGCCCACATTCGAATCACTCC	0.408000										HNSCC(25;0.065)			4	147					0	0	1	0	0
C16orf78	123970	broad.mit.edu	37	16	49433132	49433132	+	Silent	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr16:49433132C>G	uc002efr.2	+	5	784	c.741C>G	c.(739-741)GTC>GTG	p.V247V		NM_144602	NP_653203	Q8WTQ4	CP078_HUMAN	hypothetical protein LOC123970	247										central_nervous_system(1)	1						CCCACATGGTCGAAGAGGACA	0.498000													26	80					0	0	1	0	0
HEATR3	55027	broad.mit.edu	37	16	50100092	50100092	+	Missense_Mutation	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr16:50100092C>T	uc002efw.2	+	1	212	c.50C>T	c.(49-51)ACG>ATG	p.T17M	HEATR3_uc002efx.2_Translation_Start_Site	NM_182922	NP_891552	Q7Z4Q2	HEAT3_HUMAN	HEAT repeat containing 3	17							binding			ovary(1)|skin(1)	2						TTCTCCCCTACGGGCGACTGT	0.697000													3	11					0	0	1	0	0
ADCY7	113	broad.mit.edu	37	16	50332831	50332831	+	Missense_Mutation	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr16:50332831G>A	uc002egd.1	+	7	1233	c.965G>A	c.(964-966)CGA>CAA	p.R322Q	ADCY7_uc002egb.1_Missense_Mutation_p.R322Q|ADCY7_uc002egc.1_Missense_Mutation_p.R322Q	NM_001114	NP_001105	P51828	ADCY7_HUMAN	adenylate cyclase 7	322	Cytoplasmic (Potential).|Guanylate cyclase 1.				activation of adenylate cyclase activity by G-protein signaling pathway|activation of phospholipase C activity|activation of protein kinase A activity|cellular response to ethanol|cellular response to glucagon stimulus|energy reserve metabolic process|inhibition of adenylate cyclase activity by G-protein signaling pathway|nerve growth factor receptor signaling pathway|positive regulation of cAMP biosynthetic process|synaptic transmission|transmembrane transport|water transport	integral to membrane|plasma membrane	adenylate cyclase activity|ATP binding|metal ion binding			skin(1)	1		all_cancers(37;0.0127)		GBM - Glioblastoma multiforme(240;0.195)	Bromocriptine(DB01200)	GAGTGCATGCGAATCAAGATC	0.647000													23	114					0	0	1	0	0
NOD2	64127	broad.mit.edu	37	16	50745680	50745680	+	Missense_Mutation	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr16:50745680G>A	uc002egm.1	+	4	1963	c.1858G>A	c.(1858-1860)GAT>AAT	p.D620N	NOD2_uc010cbk.1_Missense_Mutation_p.D593N|NOD2_uc002egl.1_Missense_Mutation_p.D398N|NOD2_uc010cbl.1_Missense_Mutation_p.D398N|NOD2_uc010cbm.1_Missense_Mutation_p.D398N|NOD2_uc010cbn.1_RNA|NOD2_uc010cbo.1_RNA|NOD2_uc010cbp.1_5'Flank|NOD2_uc010cbq.1_5'Flank|NOD2_uc010cbr.1_5'Flank	NM_022162	NP_071445	Q9HC29	NOD2_HUMAN	nucleotide-binding oligomerization domain	620					activation of MAPK activity involved in innate immune response|cytokine production involved in immune response|detection of bacterium|detection of muramyl dipeptide|JNK cascade|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|negative regulation of macrophage apoptosis|nucleotide-binding oligomerization domain containing 2 signaling pathway|positive regulation of B cell activation|positive regulation of dendritic cell antigen processing and presentation|positive regulation of epithelial cell proliferation|positive regulation of ERK1 and ERK2 cascade|positive regulation of gamma-delta T cell activation|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of interleukin-1 beta secretion|positive regulation of interleukin-10 production|positive regulation of interleukin-17 production|positive regulation of interleukin-6 production|positive regulation of JNK cascade|positive regulation of NF-kappaB transcription factor activity|positive regulation of nitric-oxide synthase biosynthetic process|positive regulation of Notch signaling pathway|positive regulation of phosphatidylinositol 3-kinase activity|positive regulation of prostaglandin-E synthase activity|positive regulation of prostaglandin-endoperoxide synthase activity|positive regulation of stress-activated MAPK cascade|positive regulation of tumor necrosis factor production|positive regulation of type 2 immune response|protein oligomerization|stress-activated MAPK cascade|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	cell surface|cytosol|plasma membrane|vesicle	ATP binding|CARD domain binding|muramyl dipeptide binding|protein kinase binding			ovary(3)|skin(1)	4		all_cancers(37;0.0156)				ACTCAGTGCTGATGTGCCACC	0.587000													15	34					0	0	1	0	0
SLC12A3	6559	broad.mit.edu	37	16	56918016	56918016	+	Silent	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr16:56918016C>T	uc010ccm.2	+	14	1754	c.1725C>T	c.(1723-1725)ATC>ATT	p.I575I	SLC12A3_uc002ekd.3_Silent_p.I575I|SLC12A3_uc010ccn.2_Silent_p.I574I	NM_001126108	NP_001119580	P55017	S12A3_HUMAN	solute carrier family 12, member 3 isoform 3	575	Cytoplasmic (Potential).				sodium ion transmembrane transport	apical plasma membrane|integral to plasma membrane|membrane fraction	sodium:chloride symporter activity			ovary(2)|breast(1)	3					Bendroflumethiazide(DB00436)|Benzthiazide(DB00562)|Chlorothiazide(DB00880)|Diazoxide(DB01119)|Hydrochlorothiazide(DB00999)|Metolazone(DB00524)|Polythiazide(DB01324)|Quinethazone(DB01325)	TTGGGGCTATCATCTCCGTGG	0.587000													17	76					0	0	1	0	0
CIAPIN1	57019	broad.mit.edu	37	16	57468100	57468100	+	Missense_Mutation	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr16:57468100C>T	uc002ell.1	-	5	583	c.412G>A	c.(412-414)GAG>AAG	p.E138K	CIAPIN1_uc002elk.1_RNA|CIAPIN1_uc002elm.1_Missense_Mutation_p.E125K|CIAPIN1_uc002eln.1_Missense_Mutation_p.E138K|CIAPIN1_uc010cda.1_Missense_Mutation_p.E138K|CIAPIN1_uc002elo.1_Missense_Mutation_p.E111K|CIAPIN1_uc010vhm.1_Missense_Mutation_p.E138K	NM_020313	NP_064709	Q6FI81	CPIN1_HUMAN	cytokine induced apoptosis inhibitor 1	138					anti-apoptosis|apoptosis	cytoplasm|nucleolus					0						TGTACTTCCTCAGGGGTTAGG	0.448000													36	138					0	0	1	0	0
POLR2C	5432	broad.mit.edu	37	16	57503910	57503910	+	Silent	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr16:57503910G>C	uc002elt.1	+	7	563	c.477G>C	c.(475-477)CTG>CTC	p.L159L		NM_032940	NP_116558	P19387	RPB3_HUMAN	DNA directed RNA polymerase II polypeptide C	159					mRNA capping|nuclear mRNA splicing, via spliceosome|positive regulation of viral transcription|protein phosphorylation|transcription elongation from RNA polymerase II promoter|transcription initiation from RNA polymerase II promoter|transcription-coupled nucleotide-excision repair|viral reproduction	DNA-directed RNA polymerase II, core complex	DNA binding|DNA-directed RNA polymerase activity|protein dimerization activity				0						GCCAGGAGCTGAGACTTCGAG	0.522000													14	51					0	0	1	0	0
GPR114	221188	broad.mit.edu	37	16	57601501	57601501	+	Silent	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr16:57601501C>T	uc002elx.3	+	8	904	c.819C>T	c.(817-819)TTC>TTT	p.F273F	GPR114_uc010vhr.1_Silent_p.F273F|GPR114_uc002ely.2_Silent_p.F273F	NM_153837	NP_722579	Q8IZF4	GP114_HUMAN	G protein-coupled receptor 114 precursor	273	Cytoplasmic (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			central_nervous_system(1)	1						ACTTCCATTTCAGGTATTCCG	0.572000													15	49					0	0	1	0	0
KATNB1	10300	broad.mit.edu	37	16	57789806	57789806	+	Silent	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr16:57789806C>T	uc002eml.1	+	17	1994	c.1620C>T	c.(1618-1620)CTC>CTT	p.L540L		NM_005886	NP_005877	Q9BVA0	KTNB1_HUMAN	katanin p80 subunit B 1	540	Interaction with KATNA1 and NDEL1 (By similarity).				cell division|mitosis|negative regulation of microtubule depolymerization|positive regulation of microtubule depolymerization|protein targeting	katanin complex|microtubule|spindle pole	microtubule binding|protein heterodimerization activity				0		all_neural(199;0.223)				TGGTGGACCTCCTGAACATCG	0.547000													9	49					0	0	1	0	0
CNGB1	1258	broad.mit.edu	37	16	57921841	57921841	+	Missense_Mutation	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr16:57921841C>T	uc002emt.2	-	32	3445	c.3380G>A	c.(3379-3381)GGC>GAC	p.G1127D	CNGB1_uc010cdh.2_Missense_Mutation_p.G1121D	NM_001297	NP_001288	Q14028	CNGB1_HUMAN	cyclic nucleotide gated channel beta 1 isoform	1127	Cytoplasmic (Potential).				sensory perception of smell	intracellular cyclic nucleotide activated cation channel complex	cAMP binding|intracellular cAMP activated cation channel activity			breast(3)|pancreas(1)	4						AGCAAGTTTGCCGCCTTTTGC	0.612000													4	243					0	0	1	0	0
GINS3	64785	broad.mit.edu	37	16	58426654	58426654	+	Missense_Mutation	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr16:58426654G>A	uc002enh.3	+	1	357	c.149G>A	c.(148-150)CGG>CAG	p.R50Q	GINS3_uc010cdj.2_Missense_Mutation_p.R50Q|GINS3_uc002enj.3_Missense_Mutation_p.R50Q|GINS3_uc002eni.3_Missense_Mutation_p.R50Q	NM_022770	NP_073607	Q9BRX5	PSF3_HUMAN	GINS complex subunit 3 isoform b	50					DNA replication	nucleus					0						TTCCTGGAGCGGAGCGCAGGC	0.662000													11	28					0	0	1	0	0
GOT2	2806	broad.mit.edu	37	16	58768070	58768070	+	Silent	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr16:58768070G>A	uc002eof.1	-	1	177	c.63C>T	c.(61-63)CTC>CTT	p.L21L	GOT2_uc010vim.1_Silent_p.L21L	NM_002080	NP_002071	P00505	AATM_HUMAN	aspartate aminotransferase 2 precursor	21					aspartate catabolic process|fatty acid transport|gluconeogenesis|response to ethanol	mitochondrial matrix|plasma membrane	L-aspartate:2-oxoglutarate aminotransferase activity|protein binding|pyridoxal phosphate binding			central_nervous_system(1)|skin(1)	2					L-Aspartic Acid(DB00128)|L-Glutamic Acid(DB00142)|Pyridoxal Phosphate(DB00114)	CCGCGGCGGCGAGGCCCGGGT	0.731000													3	26					0	0	1	0	0
HSF4	3299	broad.mit.edu	37	16	67200473	67200473	+	Missense_Mutation	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr16:67200473C>T	uc002erl.1	+	8	1539	c.574C>T	c.(574-576)CTC>TTC	p.L192F	HSF4_uc002erm.1_Missense_Mutation_p.L192F|HSF4_uc002ern.1_RNA|HSF4_uc010cec.1_RNA	NM_001040667	NP_001035757	Q9ULV5	HSF4_HUMAN	heat shock transcription factor 4 isoform b	192	Hydrophobic repeat HR-A/B.				response to stress	nucleus	sequence-specific DNA binding transcription factor activity|transcription corepressor activity				0		Ovarian(137;0.0563)		OV - Ovarian serous cystadenocarcinoma(108;0.0143)|Epithelial(162;0.0335)|all cancers(182;0.184)		GATCCAGTGTCTCTTTGGGCC	0.562000													18	70					0	0	1	0	0
ELMO3	79767	broad.mit.edu	37	16	67235753	67235753	+	Missense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr16:67235753G>C	uc002esa.2	+	11	1229	c.1186G>C	c.(1186-1188)GAG>CAG	p.E396Q	ELMO3_uc002esb.2_Missense_Mutation_p.E379Q|ELMO3_uc002esc.2_Missense_Mutation_p.E230Q	NM_024712	NP_078988	Q96BJ8	ELMO3_HUMAN	engulfment and cell motility 3	343	ELMO.				apoptosis|phagocytosis	cytoplasm|cytoskeleton	SH3 domain binding				0		Ovarian(137;0.0563)		OV - Ovarian serous cystadenocarcinoma(108;0.00067)|Epithelial(162;0.00442)|all cancers(182;0.0417)		CTGTGCCCGAGAGTTCCGCAA	0.652000													25	97					0	0	1	0	0
MIR328	442901	broad.mit.edu	37	16	67236241	67236241	+	RNA	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr16:67236241G>A	hsa-mir-328|MI0000804	-			c.58G>A			ELMO3_uc002esa.2_Intron|ELMO3_uc002esb.2_Intron|ELMO3_uc002esc.2_Intron|uc010vjf.1_RNA																	0						CGGAAGGGCAGAGAGGGCCAG	0.652000													34	101					0	0	1	0	0
THAP11	57215	broad.mit.edu	37	16	67876870	67876870	+	Missense_Mutation	SNP	C	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr16:67876870C>A	uc002euo.2	+	1	658	c.413C>A	c.(412-414)TCC>TAC	p.S138Y	CENPT_uc002eun.3_Intron	NM_020457	NP_065190	Q96EK4	THA11_HUMAN	THAP domain containing 11	138	Gln-rich.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	DNA binding|identical protein binding|metal ion binding				0		Acute lymphoblastic leukemia(13;0.000299)|all_hematologic(13;0.0184)|Ovarian(137;0.0563)		OV - Ovarian serous cystadenocarcinoma(108;0.00412)|Epithelial(162;0.018)|all cancers(182;0.118)		CCCTCTGCCTCCACTGCCCAG	0.373000													23	127					4.26978e-12	4.42151e-12	1	1	0
EDC4	23644	broad.mit.edu	37	16	67910814	67910814	+	Missense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr16:67910814G>C	uc002eur.2	+	4	556	c.390G>C	c.(388-390)CAG>CAC	p.Q130H	EDC4_uc010cer.2_5'UTR|EDC4_uc010vkg.1_Missense_Mutation_p.Q62H|EDC4_uc010ces.1_5'UTR|EDC4_uc002eus.2_5'Flank	NM_014329	NP_055144	Q6P2E9	EDC4_HUMAN	autoantigen RCD8	130					exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay	cytoplasmic mRNA processing body|cytosol|nucleus	protein binding			ovary(2)|central_nervous_system(2)	4		Ovarian(137;0.0563)		OV - Ovarian serous cystadenocarcinoma(108;0.0042)|Epithelial(162;0.0185)|all cancers(182;0.121)		ACTGGGAACAGAAGTACTACT	0.507000													46	189					0	0	1	0	0
LCAT	3931	broad.mit.edu	37	16	67974263	67974263	+	Silent	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr16:67974263G>A	uc002euy.1	-	6	878	c.867C>T	c.(865-867)TTC>TTT	p.F289F		NM_000229	NP_000220	P04180	LCAT_HUMAN	lecithin-cholesterol acyltransferase precursor	289					cholesterol esterification|cholesterol homeostasis|cholesterol metabolic process|high-density lipoprotein particle remodeling|phosphatidylcholine biosynthetic process|reverse cholesterol transport|very-low-density lipoprotein particle remodeling	high-density lipoprotein particle	apolipoprotein A-I binding|phosphatidylcholine-sterol O-acyltransferase activity				0		Ovarian(137;0.0563)		OV - Ovarian serous cystadenocarcinoma(108;0.00418)|Epithelial(162;0.0183)|all cancers(182;0.12)		GTGTGGAAATGAACACGTGGT	0.557000													46	128					0	0	1	0	0
LCAT	3931	broad.mit.edu	37	16	67974298	67974298	+	Missense_Mutation	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr16:67974298G>A	uc002euy.1	-	6	843	c.832C>T	c.(832-834)CCC>TCC	p.P278S		NM_000229	NP_000220	P04180	LCAT_HUMAN	lecithin-cholesterol acyltransferase precursor	278					cholesterol esterification|cholesterol homeostasis|cholesterol metabolic process|high-density lipoprotein particle remodeling|phosphatidylcholine biosynthetic process|reverse cholesterol transport|very-low-density lipoprotein particle remodeling	high-density lipoprotein particle	apolipoprotein A-I binding|phosphatidylcholine-sterol O-acyltransferase activity				0		Ovarian(137;0.0563)		OV - Ovarian serous cystadenocarcinoma(108;0.00418)|Epithelial(162;0.0183)|all cancers(182;0.12)		ATGCGAGAGGGAAACATCCAG	0.552000													23	138					0	0	1	0	0
LCAT	3931	broad.mit.edu	37	16	67974359	67974359	+	Silent	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr16:67974359G>A	uc002euy.1	-	6	782	c.771C>T	c.(769-771)ATC>ATT	p.I257I		NM_000229	NP_000220	P04180	LCAT_HUMAN	lecithin-cholesterol acyltransferase precursor	257				I -> H (in Ref. 8; CAB56610/AAA59499).	cholesterol esterification|cholesterol homeostasis|cholesterol metabolic process|high-density lipoprotein particle remodeling|phosphatidylcholine biosynthetic process|reverse cholesterol transport|very-low-density lipoprotein particle remodeling	high-density lipoprotein particle	apolipoprotein A-I binding|phosphatidylcholine-sterol O-acyltransferase activity				0		Ovarian(137;0.0563)		OV - Ovarian serous cystadenocarcinoma(108;0.00418)|Epithelial(162;0.0183)|all cancers(182;0.12)		TGCTGGACATGATGGGGATGC	0.592000													18	80					0	0	1	0	0
LCAT	3931	broad.mit.edu	37	16	67974364	67974364	+	Missense_Mutation	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr16:67974364G>A	uc002euy.1	-	6	777	c.766C>T	c.(766-768)CCC>TCC	p.P256S		NM_000229	NP_000220	P04180	LCAT_HUMAN	lecithin-cholesterol acyltransferase precursor	256					cholesterol esterification|cholesterol homeostasis|cholesterol metabolic process|high-density lipoprotein particle remodeling|phosphatidylcholine biosynthetic process|reverse cholesterol transport|very-low-density lipoprotein particle remodeling	high-density lipoprotein particle	apolipoprotein A-I binding|phosphatidylcholine-sterol O-acyltransferase activity				0		Ovarian(137;0.0563)		OV - Ovarian serous cystadenocarcinoma(108;0.00418)|Epithelial(162;0.0183)|all cancers(182;0.12)		GACATGATGGGGATGCCCTGG	0.602000													17	73					0	0	1	0	0
DUS2L	54920	broad.mit.edu	37	16	68090294	68090294	+	Silent	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr16:68090294C>G	uc002evi.2	+	7	485	c.336C>G	c.(334-336)GTC>GTG	p.V112V	DUS2L_uc002evj.2_Silent_p.V112V|DUS2L_uc010vkk.1_Intron|DUS2L_uc010cez.2_Silent_p.V25V	NM_017803	NP_060273	Q9NX74	DUS2L_HUMAN	dihydrouridine synthase 2-like, SMM1 homolog	112					tRNA processing	endoplasmic reticulum	double-stranded RNA binding|flavin adenine dinucleotide binding|tRNA dihydrouridine synthase activity				0		Ovarian(137;0.192)		OV - Ovarian serous cystadenocarcinoma(108;0.0131)|Epithelial(162;0.0564)		GTATTGATGTCAACATGGGCT	0.313000													18	73					0	0	1	0	0
NFATC3	4775	broad.mit.edu	37	16	68156798	68156798	+	Missense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr16:68156798C>G	uc002evo.1	+	2	1222	c.1012C>G	c.(1012-1014)CTC>GTC	p.L338V	NFATC3_uc010vkl.1_5'UTR|NFATC3_uc010vkm.1_5'UTR|NFATC3_uc010vkn.1_5'UTR|NFATC3_uc010vko.1_5'UTR|NFATC3_uc010vkp.1_5'UTR|NFATC3_uc010vkq.1_5'UTR|NFATC3_uc002evl.2_Intron|NFATC3_uc002evk.2_Missense_Mutation_p.L338V|NFATC3_uc002evm.1_Missense_Mutation_p.L338V|NFATC3_uc002evn.1_Missense_Mutation_p.L338V|NFATC3_uc010vkr.1_5'UTR|NFATC3_uc010vks.1_5'UTR|NFATC3_uc010vkt.1_5'UTR|NFATC3_uc010vku.1_5'UTR|NFATC3_uc010vkv.1_5'UTR|NFATC3_uc010vkw.1_5'UTR|NFATC3_uc010vkx.1_5'UTR|NFATC3_uc010vky.1_5'UTR|NFATC3_uc010vkz.1_5'UTR|NFATC3_uc010vla.1_5'UTR|NFATC3_uc010vlb.1_5'UTR|NFATC3_uc010vlc.1_5'UTR	NM_173165	NP_775188	Q12968	NFAC3_HUMAN	nuclear factor of activated T-cells,	338					inflammatory response|transcription from RNA polymerase II promoter	nucleolus|plasma membrane	DNA binding			upper_aerodigestive_tract(1)|central_nervous_system(1)|pancreas(1)	3		Ovarian(137;0.0563)		OV - Ovarian serous cystadenocarcinoma(108;0.0119)|Epithelial(162;0.0452)|all cancers(182;0.24)		TGACATCCCTCTCAAAACAAG	0.478000													41	126					0	0	1	0	0
HAS3	3038	broad.mit.edu	37	16	69147371	69147371	+	Missense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr16:69147371C>G	uc010cfh.2	+	3	888	c.664C>G	c.(664-666)CCA>GCA	p.P222A	HAS3_uc002ewk.2_Missense_Mutation_p.P222A|HAS3_uc002ewl.2_Missense_Mutation_p.P222A	NM_005329	NP_005320	O00219	HAS3_HUMAN	hyaluronan synthase 3 isoform a	222	Cytoplasmic (Potential).				carbohydrate metabolic process	integral to plasma membrane	hyaluronan synthase activity				0		Ovarian(137;0.101)		OV - Ovarian serous cystadenocarcinoma(108;0.0694)		TGTGCTGGATCCAGCCTGCAC	0.607000											OREG0023905	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	34	105					0	0	1	0	0
NOB1	28987	broad.mit.edu	37	16	69776286	69776286	+	Silent	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr16:69776286C>G	uc002exs.2	-	9	1204	c.1188G>C	c.(1186-1188)CGG>CGC	p.R396R		NM_014062	NP_054781	Q9ULX3	NOB1_HUMAN	nin one binding protein	396						nucleus	metal ion binding|protein binding				0						TTAAGCGTCTCCGCCCAGCTC	0.587000													29	77					0	0	1	0	0
HYDIN	54768	broad.mit.edu	37	16	71015349	71015349	+	Silent	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr16:71015349C>T	uc002ezr.2	-	29	4580	c.4452G>A	c.(4450-4452)CTG>CTA	p.L1484L		NM_032821	NP_116210	Q4G0P3	HYDIN_HUMAN	hydrocephalus inducing isoform a	1485										ovary(1)|skin(1)	2		Ovarian(137;0.0654)				CCTCTCCGCTCAGAGTGATAT	0.483000													24	102					0	0	1	0	0
CHST4	10164	broad.mit.edu	37	16	71570649	71570649	+	Missense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr16:71570649C>G	uc002fan.2	+	2	250	c.69C>G	c.(67-69)TTC>TTG	p.F23L	CHST4_uc002fao.2_Missense_Mutation_p.F23L	NM_005769	NP_005760	Q8NCG5	CHST4_HUMAN	carbohydrate (N-acetylglucosamine 6-O)	23	Helical; Signal-anchor for type II membrane protein; (Potential).				cell-cell signaling|immune response|inflammatory response|N-acetylglucosamine metabolic process|protein sulfation	integral to membrane|intrinsic to Golgi membrane|trans-Golgi network	N-acetylglucosamine 6-O-sulfotransferase activity				0						TGGCTCTATTCTTCCACATGT	0.498000													24	99					0	0	1	0	0
CHST6	4166	broad.mit.edu	37	16	75513405	75513405	+	Missense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr16:75513405C>G	uc002fef.2	-	3	502	c.322G>C	c.(322-324)GAT>CAT	p.D108H	CHST6_uc002feg.1_RNA|CHST6_uc002feh.1_Missense_Mutation_p.D108H	NM_021615	NP_067628	Q9GZX3	CHST6_HUMAN	carbohydrate (N-acetylglucosamine 6-O)	108	Lumenal (Potential).				keratan sulfate biosynthetic process|N-acetylglucosamine metabolic process	Golgi membrane|integral to membrane	N-acetylglucosamine 6-O-sulfotransferase activity				0						AGATAGGCATCAAACACGTCC	0.667000													3	70					0	0	1	0	0
CHST5	23563	broad.mit.edu	37	16	75563112	75563112	+	Missense_Mutation	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr16:75563112C>T	uc002fei.2	-	3	2566	c.1171G>A	c.(1171-1173)GAC>AAC	p.D391N	CHST5_uc002fej.1_Missense_Mutation_p.D397N	NM_024533	NP_078809	Q9GZS9	CHST5_HUMAN	carbohydrate (N-acetylglucosamine 6-O)	391	Lumenal (Potential).				N-acetylglucosamine metabolic process|protein sulfation	integral to membrane|intrinsic to Golgi membrane	N-acetylglucosamine 6-O-sulfotransferase activity				0						AGGGTGAGGTCACGCTGCTGG	0.657000													6	39					0	0	1	0	0
KIAA0182	23199	broad.mit.edu	37	16	85689362	85689362	+	Silent	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr16:85689362G>A	uc002fix.2	+	6	902	c.828G>A	c.(826-828)CTG>CTA	p.L276L	KIAA0182_uc002fiw.2_Silent_p.L172L|KIAA0182_uc002fiy.2_Silent_p.L203L	NM_014615	NP_055430	Q14687	GSE1_HUMAN	genetic suppressor element 1 isoform 1	276							protein binding			large_intestine(3)|ovary(1)|skin(1)	5						TGTCTGCCCTGAGGTCCCCGT	0.647000													14	56					0	0	1	0	0
APRT	353	broad.mit.edu	37	16	88878028	88878028	+	Silent	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr16:88878028G>A	uc002flv.2	-	2	152	c.117C>T	c.(115-117)TTC>TTT	p.F39F	APRT_uc002flw.2_Silent_p.F39F	NM_000485	NP_000476	P07741	APT_HUMAN	adenine phosphoribosyltransferase isoform a	39					purine ribonucleoside salvage	cytosol|nucleus	adenine phosphoribosyltransferase activity|AMP binding|protein binding				0				BRCA - Breast invasive adenocarcinoma(80;0.0477)	Adenine(DB00173)|Adenosine monophosphate(DB00131)	TGGCGGCGCGGAAGGAGGCGG	0.726000													3	12					0	0	1	0	0
C16orf55	124045	broad.mit.edu	37	16	89724711	89724711	+	Silent	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr16:89724711G>A	uc002fnw.1	+	2	90	c.90G>A	c.(88-90)TTG>TTA	p.L30L	CHMP1A_uc002fnu.2_5'Flank|CHMP1A_uc002fnv.2_5'Flank|C16orf55_uc002fnx.3_Silent_p.L31L|C16orf55_uc010vpk.1_Silent_p.L31L|C16orf55_uc002fny.1_Intron	NM_153025	NP_694570	Q96N06	CP055_HUMAN	hypothetical protein LOC124045	30											0		all_lung(18;0.000665)|all_hematologic(23;0.0355)		BRCA - Breast invasive adenocarcinoma(80;0.0274)		AGGAGAAGTTGATGGAGAAGC	0.562000													19	37					0	0	1	0	0
SPATA2L	124044	broad.mit.edu	37	16	89764620	89764620	+	Missense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr16:89764620C>G	uc002foj.2	-	3	462	c.397G>C	c.(397-399)GAC>CAC	p.D133H	SPATA2L_uc002fok.2_Missense_Mutation_p.D133H	NM_152339	NP_689552	Q8IUW3	SPA2L_HUMAN	spermatogenesis associated 2-like	133											0		Lung NSC(15;0.00043)|all_lung(18;0.000665)|all_hematologic(23;0.0355)		BRCA - Breast invasive adenocarcinoma(80;0.0272)		CGATGGCTGTCTCTGCGTACG	0.647000													50	171					0	0	1	0	0
ZNF276	92822	broad.mit.edu	37	16	89804295	89804295	+	Missense_Mutation	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr16:89804295C>T	uc002fos.3	+	10	1653	c.1556C>T	c.(1555-1557)TCG>TTG	p.S519L	ZNF276_uc010ciq.2_Missense_Mutation_p.S305L|ZNF276_uc002fop.2_Missense_Mutation_p.S427L|ZNF276_uc002foq.3_Missense_Mutation_p.S444L|ZNF276_uc010cir.2_RNA|ZNF276_uc002for.3_Missense_Mutation_p.S305L|ZNF276_uc010cis.2_Missense_Mutation_p.S278L|ZNF276_uc002fot.3_RNA|ZNF276_uc010vpm.1_Missense_Mutation_p.S357L|ZNF276_uc010cit.1_Missense_Mutation_p.S278L|FANCA_uc002fou.1_3'UTR|FANCA_uc010vpn.1_3'UTR	NM_001113525	NP_001106997	Q8N554	ZN276_HUMAN	zinc finger protein 276 isoform a	519					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Lung NSC(15;2.19e-05)|all_lung(18;3.07e-05)|all_hematologic(23;0.0256)		BRCA - Breast invasive adenocarcinoma(80;0.0278)		ATGCGACATTCGGGAGCCAAG	0.572000													23	72					0	0	1	0	0
TUBB3	10381	broad.mit.edu	37	16	90001669	90001669	+	Silent	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr16:90001669C>T	uc002fph.1	+	4	875	c.810C>T	c.(808-810)TTC>TTT	p.F270F	TUBB3_uc002fpf.2_Silent_p.F617F|TUBB3_uc010ciz.1_Silent_p.F198F|TUBB3_uc002fpg.1_Silent_p.F124F|TUBB3_uc002fpi.1_Silent_p.F198F|TUBB3_uc002fpj.1_Silent_p.F198F|TUBB3_uc010cjb.1_Silent_p.F124F|TUBB3_uc002fpk.1_Silent_p.F124F	NM_006086	NP_006077	Q13509	TBB3_HUMAN	tubulin, beta, 4	270					'de novo' posttranslational protein folding|axon guidance|microtubule-based movement|protein polymerization	cytoplasm|microtubule	GTP binding|GTPase activity|structural molecule activity			ovary(2)|pancreas(1)	3		all_cancers(9;1.69e-11)|Lung NSC(15;8.94e-06)|all_lung(18;1.39e-05)|all_neural(9;0.00581)|all_hematologic(23;0.0194)		BRCA - Breast invasive adenocarcinoma(80;0.0273)		TGCCCGGCTTCGCCCCCCTCA	0.677000													15	60					0	0	1	0	0
DEF8	54849	broad.mit.edu	37	16	90025502	90025502	+	Missense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr16:90025502G>C	uc002fpn.1	+	6	725	c.636G>C	c.(634-636)CAG>CAC	p.Q212H	DEF8_uc002fpl.2_Missense_Mutation_p.Q151H|DEF8_uc002fpm.2_Missense_Mutation_p.Q151H|DEF8_uc002fpo.1_Missense_Mutation_p.Q151H|DEF8_uc002fpp.1_Missense_Mutation_p.Q141H|DEF8_uc010vpq.1_Missense_Mutation_p.Q91H|DEF8_uc010vpr.1_Missense_Mutation_p.Q151H	NM_207514	NP_997397	Q6ZN54	DEFI8_HUMAN	differentially expressed in FDCP 8 isoform 1	212	Phorbol-ester/DAG-type 1.				intracellular signal transduction		zinc ion binding			central_nervous_system(1)	1		all_cancers(9;7.59e-13)|Lung NSC(15;1.56e-06)|all_lung(18;2.18e-06)|all_neural(9;0.0019)|all_hematologic(23;0.0194)		BRCA - Breast invasive adenocarcinoma(80;0.0274)		GCGTCAAGCAGACCTGTGACA	0.532000													8	163					0	0	1	0	0
FAM57A	79850	broad.mit.edu	37	17	643789	643789	+	Silent	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr17:643789C>T	uc002frp.2	+	4	494	c.453C>T	c.(451-453)TTC>TTT	p.F151F	FAM57A_uc002frq.2_Intron|FAM57A_uc002frr.2_Silent_p.F61F	NM_024792	NP_079068	Q8TBR7	FA57A_HUMAN	family with sequence similarity 57, member A	151	TLC.|Helical; (Potential).					integral to membrane|plasma membrane					0				UCEC - Uterine corpus endometrioid carcinoma (25;0.0217)		GCTGCATCTTCACGGCAGAAC	0.517000													39	92					0	0	1	0	0
GEMIN4	50628	broad.mit.edu	37	17	648334	648334	+	Missense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr17:648334G>C	uc002frs.1	-	2	3068	c.2949C>G	c.(2947-2949)TTC>TTG	p.F983L		NM_015721	NP_056536	P57678	GEMI4_HUMAN	gemin 4	983					rRNA processing|spliceosomal snRNP assembly	Cajal body|cytosol|nucleolus|small nuclear ribonucleoprotein complex|spliceosomal complex	protein binding			ovary(2)|kidney(1)|skin(1)	4		Myeloproliferative disorder(207;0.204)		UCEC - Uterine corpus endometrioid carcinoma (25;0.022)		GAGCATGGCAGAACACCTGGG	0.562000													6	20					0	0	1	0	0
SMG6	23293	broad.mit.edu	37	17	2195915	2195915	+	Silent	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr17:2195915C>T	uc002fub.1	-	6	2323	c.2268G>A	c.(2266-2268)CTG>CTA	p.L756L		NM_017575	NP_060045	Q86US8	EST1A_HUMAN	Smg-6 homolog, nonsense mediated mRNA decay	756					mRNA export from nucleus|nuclear-transcribed mRNA catabolic process, nonsense-mediated decay|regulation of dephosphorylation|telomere maintenance	chromosome, telomeric region|cytosol|nucleolus|telomerase holoenzyme complex	endoribonuclease activity|metal ion binding|protein binding|telomeric DNA binding			central_nervous_system(2)|lung(1)|kidney(1)	4						GCTGGGCCTTCAGGTACCAAC	0.438000													53	146					0	0	1	0	0
KIAA0664	23277	broad.mit.edu	37	17	2596110	2596110	+	Silent	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr17:2596110C>G	uc002fuy.1	-	20	3245	c.3159G>C	c.(3157-3159)GTG>GTC	p.V1053V	KIAA0664_uc002fux.1_Silent_p.V986V|KIAA0664_uc010ckc.1_Silent_p.V39V	NM_015229	NP_056044	O75153	K0664_HUMAN	hypothetical protein LOC23277	1053	TPR 2.						binding			breast(2)	2						CGGTGCCCATCACCCGCTCGC	0.692000													14	21					0	0	1	0	0
CTNS	1497	broad.mit.edu	37	17	3559814	3559814	+	Silent	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr17:3559814G>C	uc002fwb.2	+	8	1088	c.495G>C	c.(493-495)CTG>CTC	p.L165L	CTNS_uc002fwa.2_Silent_p.L165L|CTNS_uc010ckj.2_Silent_p.L165L|CTNS_uc010vrv.1_Silent_p.L18L|CTNS_uc010vrw.1_Silent_p.L57L	NM_004937	NP_004928	O60931	CTNS_HUMAN	cystinosin isoform 2	165	PQ-loop 1.|Helical; (Potential).				ATP metabolic process|brain development|cognition|glutathione metabolic process	integral to membrane|late endosome|lysosomal membrane	L-cystine transmembrane transporter activity				0				COAD - Colon adenocarcinoma(5;0.0829)	L-Cystine(DB00138)	TCGTGGCTCTGAACCTGACGG	0.532000													7	32					0	0	1	0	0
ZZEF1	23140	broad.mit.edu	37	17	3928361	3928361	+	Missense_Mutation	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr17:3928361G>A	uc002fxe.2	-	43	7008	c.6944C>T	c.(6943-6945)TCT>TTT	p.S2315F	ZZEF1_uc002fxh.2_Missense_Mutation_p.S629F|ZZEF1_uc002fxi.2_Missense_Mutation_p.S550F	NM_015113	NP_055928	O43149	ZZEF1_HUMAN	zinc finger, ZZ type with EF hand domain 1	2315							calcium ion binding|zinc ion binding			ovary(2)|central_nervous_system(1)|pancreas(1)	4						CTGGGCCCGAGAGTCACCACA	0.532000													24	70					0	0	1	0	0
PLD2	5338	broad.mit.edu	37	17	4711670	4711670	+	Silent	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr17:4711670C>T	uc002fzc.2	+	4	443	c.342C>T	c.(340-342)CTC>CTT	p.L114L	PLD2_uc010vsj.1_5'UTR|PLD2_uc002fzd.2_Silent_p.L114L	NM_002663	NP_002654	O14939	PLD2_HUMAN	phospholipase D2	114	PX.				cell communication|cytoskeleton organization|small GTPase mediated signal transduction		NAPE-specific phospholipase D activity|phosphatidylinositol binding|phospholipase D activity			breast(2)|upper_aerodigestive_tract(1)|ovary(1)|central_nervous_system(1)	5					Choline(DB00122)	ATCGGGACCTCCTGAGACACA	0.557000													72	239					0	0	1	0	0
CHRNE	1145	broad.mit.edu	37	17	4805969	4805969	+	Missense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr17:4805969C>G	uc002fzk.1	-	2	147	c.136G>C	c.(136-138)GAG>CAG	p.E46Q	C17orf107_uc002fzl.3_3'UTR	NM_000080	NP_000071	Q04844	ACHE_HUMAN	nicotinic acetylcholine receptor epsilon	46	Extracellular (Potential).				muscle contraction|synaptic transmission, cholinergic	cell junction|nicotinic acetylcholine-gated receptor-channel complex|postsynaptic membrane	acetylcholine receptor activity|nicotinic acetylcholine-activated cation-selective channel activity				0						ACAGTATCCTCAGGCTCCCGC	0.552000													35	156					0	0	1	0	0
GP1BA	2811	broad.mit.edu	37	17	4836334	4836334	+	Silent	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr17:4836334C>G	uc010vsq.1	+	2	510	c.435C>G	c.(433-435)CTC>CTG	p.L145L	uc002fzn.1_RNA	NM_000173	NP_000164	P07359	GP1BA_HUMAN	platelet glycoprotein Ib alpha polypeptide	145											0						TCCAAGAGCTCTACCTGAAAG	0.602000													63	137					0	0	1	0	0
DHX33	56919	broad.mit.edu	37	17	5364391	5364391	+	Silent	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr17:5364391G>A	uc002gca.2	-	4	719	c.717C>T	c.(715-717)TTC>TTT	p.F239F	DHX33_uc002gbz.2_Silent_p.F10F|DHX33_uc002gcb.2_Silent_p.F66F|DHX33_uc010clf.2_Intron	NM_020162	NP_064547	Q9H6R0	DHX33_HUMAN	DEAH (Asp-Glu-Ala-His) box polypeptide 33	239	Helicase ATP-binding.					nucleolus	ATP binding|ATP-dependent helicase activity|nucleic acid binding			ovary(1)|pancreas(1)	2						AATACTGAGAGAACAGGTCCA	0.512000													46	194					0	0	1	0	0
NLRP1	22861	broad.mit.edu	37	17	5437260	5437260	+	Missense_Mutation	SNP	C	G	G	rs146497547		TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr17:5437260C>G	uc002gci.2	-	9	3564	c.3009G>C	c.(3007-3009)ATG>ATC	p.M1003I	NLRP1_uc002gcg.1_Missense_Mutation_p.M1003I|NLRP1_uc002gck.2_Missense_Mutation_p.M1003I|NLRP1_uc002gcj.2_Missense_Mutation_p.M973I|NLRP1_uc002gcl.2_Missense_Mutation_p.M973I|NLRP1_uc002gch.3_Missense_Mutation_p.M1003I|NLRP1_uc010clh.2_Missense_Mutation_p.M1003I	NM_033004	NP_127497	Q9C000	NALP1_HUMAN	NLR family, pyrin domain containing 1 isoform 1	1003					defense response to bacterium|induction of apoptosis|neuron apoptosis|positive regulation of interleukin-1 beta secretion|response to muramyl dipeptide	cytoplasm|NALP1 inflammasome complex|nucleus	ATP binding|caspase activator activity|enzyme binding|protein domain specific binding			lung(4)|breast(2)|ovary(1)|central_nervous_system(1)|skin(1)	9		Colorectal(1115;3.48e-05)				TGCTATTACTCATCTCTCCCG	0.542000													9	431					0	0	1	0	0
SLC13A5	284111	broad.mit.edu	37	17	6594154	6594154	+	Missense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr17:6594154C>G	uc002gdj.2	-	10	1469	c.1381G>C	c.(1381-1383)GAG>CAG	p.E461Q	SLC13A5_uc010vtf.1_Missense_Mutation_p.E461Q|SLC13A5_uc010clq.2_Missense_Mutation_p.E418Q|SLC13A5_uc002gdk.2_Missense_Mutation_p.E444Q	NM_177550	NP_808218	Q86YT5	S13A5_HUMAN	solute carrier family 13, member 5 isoform a	461						integral to membrane	citrate transmembrane transporter activity				0						CTTGTGCACTCAGTGAACACG	0.587000													11	221					0	0	1	0	0
ACADVL	37	broad.mit.edu	37	17	7123964	7123964	+	Silent	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr17:7123964C>G	uc002gev.2	+	4	397	c.246C>G	c.(244-246)CTC>CTG	p.L82L	DLG4_uc002get.3_5'Flank|DLG4_uc010vto.1_5'Flank|ACADVL_uc010vtp.1_Silent_p.L92L|ACADVL_uc010vtq.1_Silent_p.L128L|ACADVL_uc002gew.2_Silent_p.L60L|ACADVL_uc002gex.2_Silent_p.L6L	NM_000018	NP_000009	P49748	ACADV_HUMAN	acyl-Coenzyme A dehydrogenase, very long chain	82	Catalytic.				energy derivation by oxidation of organic compounds|fatty acid beta-oxidation using acyl-CoA dehydrogenase|negative regulation of fatty acid biosynthetic process|negative regulation of fatty acid oxidation|regulation of cholesterol metabolic process|temperature homeostasis	mitochondrial inner membrane|mitochondrial nucleoid	long-chain-acyl-CoA dehydrogenase activity			ovary(3)	3						AAGGCCAGCTCACCACAGATC	0.582000													3	142					0	0	1	0	0
ACADVL	37	broad.mit.edu	37	17	7125395	7125395	+	Nonsense_Mutation	SNP	G	A	A	rs141167669		TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr17:7125395G>A	uc002gev.2	+	8	898	c.747G>A	c.(745-747)TGG>TGA	p.W249*	DLG4_uc002get.3_5'Flank|DLG4_uc010vto.1_5'Flank|ACADVL_uc010vtp.1_Nonsense_Mutation_p.W259*|ACADVL_uc010vtq.1_Nonsense_Mutation_p.W295*|ACADVL_uc002gew.2_Nonsense_Mutation_p.W227*|ACADVL_uc002gex.2_Nonsense_Mutation_p.W173*	NM_000018	NP_000009	P49748	ACADV_HUMAN	acyl-Coenzyme A dehydrogenase, very long chain	249	Catalytic.|FAD.				energy derivation by oxidation of organic compounds|fatty acid beta-oxidation using acyl-CoA dehydrogenase|negative regulation of fatty acid biosynthetic process|negative regulation of fatty acid oxidation|regulation of cholesterol metabolic process|temperature homeostasis	mitochondrial inner membrane|mitochondrial nucleoid	long-chain-acyl-CoA dehydrogenase activity			ovary(3)	3						GCAAGCTTTGGATCAGGCAAC	0.577000													31	133					0	0	1	0	0
YBX2	51087	broad.mit.edu	37	17	7196799	7196799	+	Silent	SNP	G	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr17:7196799G>T	uc002gfq.2	-	2	387	c.330C>A	c.(328-330)ATC>ATA	p.I110I		NM_015982	NP_057066	Q9Y2T7	YBOX2_HUMAN	Y box binding protein 2	110	CSD.|Required for cytoplasmic retention (By similarity).				regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter|translational attenuation	cytoplasm|nucleus	DNA binding				0						GATACCTGTTGATGAATCCGT	0.597000													18	49					5.03518e-11	5.2011e-11	1	1	0
ZBTB4	57659	broad.mit.edu	37	17	7369795	7369795	+	Missense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr17:7369795G>C	uc002ghc.3	-	3	576	c.326C>G	c.(325-327)TCT>TGT	p.S109C	ZBTB4_uc002ghd.3_Missense_Mutation_p.S109C	NM_001128833	NP_001122305	Q9P1Z0	ZBTB4_HUMAN	zinc finger and BTB domain containing 4	109	BTB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(2)|ovary(1)|central_nervous_system(1)	4		Colorectal(1115;3.46e-05)|Myeloproliferative disorder(207;0.0255)		COAD - Colon adenocarcinoma(228;4.1e-06)|READ - Rectum adenocarcinoma(115;0.0642)		GGGagaggaagaggaagagga	0.388000													6	10					0	0	1	0	0
EIF4A1	1973	broad.mit.edu	37	17	7481234	7481234	+	Silent	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr17:7481234G>A	uc002gho.1	+	17	2321	c.996G>A	c.(994-996)CTG>CTA	p.L332L	EIF4A1_uc002ghr.1_Silent_p.L332L|EIF4A1_uc002ghq.1_Silent_p.L332L|EIF4A1_uc002ghp.1_Silent_p.L332L|SNORA67_uc010cml.1_5'Flank|CD68_uc002ghv.2_5'Flank|CD68_uc002ghu.2_5'Flank	NM_001416	NP_001407	P60842	IF4A1_HUMAN	eukaryotic translation initiation factor 4A	332	Helicase C-terminal.				nuclear-transcribed mRNA poly(A) tail shortening	cytosol|eukaryotic translation initiation factor 4F complex	ATP binding|ATP-dependent helicase activity|mRNA binding|protein binding|RNA cap binding|translation initiation factor activity			ovary(1)	1						CTGACCTGCTGGTGAGTAGAG	0.493000													21	69					0	0	1	0	0
DNAH2	146754	broad.mit.edu	37	17	7674070	7674070	+	Splice_Site	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr17:7674070G>A	uc002giu.1	+	26	4196	c.4182_splice	c.e26-1	p.R1394_splice		NM_020877	NP_065928	Q9P225	DYH2_HUMAN	dynein heavy chain domain 3						ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(6)|skin(6)|central_nervous_system(1)	13		all_cancers(10;4.66e-07)|Prostate(122;0.081)				TTGTGTCTCAGAGGTACAGAA	0.527000													4	286					0	0	1	0	0
MYH13	8735	broad.mit.edu	37	17	10210315	10210315	+	Missense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr17:10210315C>G	uc002gmk.1	-	36	5326	c.5236G>C	c.(5236-5238)GAG>CAG	p.E1746Q		NM_003802	NP_003793	Q9UKX3	MYH13_HUMAN	myosin, heavy polypeptide 13, skeletal muscle	1746	Potential.				muscle contraction	muscle myosin complex|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|microfilament motor activity			ovary(4)|skin(2)	6						ATCGAGTTCTCCACCTCTGCC	0.488000													16	82					0	0	1	0	0
MYH3	4621	broad.mit.edu	37	17	10558218	10558218	+	Missense_Mutation	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr17:10558218G>A	uc002gmq.1	-	2	241	c.164C>T	c.(163-165)TCT>TTT	p.S55F		NM_002470	NP_002461	P11055	MYH3_HUMAN	myosin, heavy chain 3, skeletal muscle,	55	Myosin head-like.				muscle filament sliding|muscle organ development	cytosol|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|microfilament motor activity			ovary(4)|central_nervous_system(2)|pancreas(1)	7						CCCATCCTGAGAACTCTTGAT	0.537000													60	228					0	0	1	0	0
RICH2	9912	broad.mit.edu	37	17	12893363	12893363	+	Missense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr17:12893363G>C	uc002gnr.3	+	21	2659	c.2332G>C	c.(2332-2334)GAT>CAT	p.D778H	RICH2_uc010vvk.1_3'UTR|RICH2_uc010vvl.1_3'UTR|RICH2_uc002gns.3_3'UTR|RICH2_uc010vvm.1_Missense_Mutation_p.D772H|RICH2_uc010vvn.1_RNA	NM_014859	NP_055674	Q17R89	RHG44_HUMAN	Rho GTPase-activating protein RICH2	778					regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity				0						TGTCCACTTTGATATTCCCTC	0.542000													18	62					0	0	1	0	0
COX10	1352	broad.mit.edu	37	17	13977716	13977716	+	Silent	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr17:13977716C>G	uc002gof.3	+	2	324	c.120C>G	c.(118-120)CTC>CTG	p.L40L	COX10_uc010vvs.1_5'UTR|COX10_uc010vvt.1_5'UTR	NM_001303	NP_001294	Q12887	COX10_HUMAN	heme A:farnesyltransferase precursor	40					heme a biosynthetic process|heme O biosynthetic process|respiratory chain complex IV assembly	integral to membrane|mitochondrial membrane	protoheme IX farnesyltransferase activity				0		all_lung(20;0.06)|Lung SC(565;0.168)		UCEC - Uterine corpus endometrioid carcinoma (92;0.106)		TACATCTTCTCAGGAATGTCA	0.408000													4	234					0	0	1	0	0
FAM18B2	201158	broad.mit.edu	37	17	15449101	15449101	+	Silent	SNP	G	A	A	rs56034550	by1000genomes	TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr17:15449101G>A	uc002goq.2	-	5	643	c.460C>T	c.(460-462)CTG>TTG	p.L154L	CDRT4_uc010vvw.1_Silent_p.L68L|FAM18B2_uc010vvx.1_Silent_p.L154L|FAM18B2_uc010cor.2_Silent_p.L154L	NM_145301	NP_660344	Q96ET8	F18B2_HUMAN	hypothetical protein LOC201158 isoform 1	154						integral to membrane					0				UCEC - Uterine corpus endometrioid carcinoma (92;0.0872)|BRCA - Breast invasive adenocarcinoma(8;0.0581)|READ - Rectum adenocarcinoma(1115;0.0967)		ATACTCACCAGCCACTTTACT	0.408000													13	146					0	0	1	0	0
NCOR1	9611	broad.mit.edu	37	17	16021223	16021223	+	Silent	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr17:16021223G>A	uc002gpo.2	-	18	2274	c.2034C>T	c.(2032-2034)CTC>CTT	p.L678L	NCOR1_uc002gpn.2_Silent_p.L678L|NCOR1_uc002gpp.1_Silent_p.L569L|NCOR1_uc002gpr.2_Silent_p.L569L	NM_006311	NP_006302	O75376	NCOR1_HUMAN	nuclear receptor co-repressor 1	678					cellular lipid metabolic process|chromatin modification|negative regulation of JNK cascade|regulation of glycolysis by negative regulation of transcription from an RNA polymerase II promoter|regulation of lipid transport by negative regulation of transcription from an RNA polymerase II promoter|spindle assembly|transcription from RNA polymerase II promoter	nuclear chromatin|spindle microtubule|transcriptional repressor complex	histone deacetylase binding|transcription corepressor activity|transcription regulatory region DNA binding			upper_aerodigestive_tract(2)|ovary(1)|central_nervous_system(1)|kidney(1)	5				UCEC - Uterine corpus endometrioid carcinoma (92;0.101)		GCTGCTGTAAGAGGTTGTCAA	0.338000													22	82					0	0	1	0	0
SREBF1	6720	broad.mit.edu	37	17	17723446	17723446	+	Missense_Mutation	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr17:17723446G>A	uc002gru.1	-	2	675	c.481C>T	c.(481-483)CCT>TCT	p.P161S	SREBF1_uc002grp.1_5'Flank|SREBF1_uc002grq.1_5'UTR|SREBF1_uc002grr.1_5'UTR|SREBF1_uc002grs.1_Missense_Mutation_p.P137S|SREBF1_uc002grt.1_Missense_Mutation_p.P191S|SREBF1_uc010cpp.1_Missense_Mutation_p.P137S|SREBF1_uc010cpq.1_Missense_Mutation_p.P161S	NM_004176	NP_004167	P36956	SRBP1_HUMAN	sterol regulatory element binding transcription	161	Pro/Ser-rich.|Cytoplasmic (Potential).				cellular response to starvation|cholesterol metabolic process|positive regulation of transcription from RNA polymerase II promoter|regulation of transcription from RNA polymerase II promoter	endoplasmic reticulum|endoplasmic reticulum membrane|ER to Golgi transport vesicle membrane|Golgi membrane|integral to membrane|nuclear envelope|nucleus	protein binding|protein binding|sequence-specific DNA binding transcription factor activity|sterol response element binding			skin(1)	1						CCTAACACAGGGGTGGAGCTG	0.687000													13	49					0	0	1	0	0
SREBF1	6720	broad.mit.edu	37	17	17723701	17723701	+	Missense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr17:17723701G>C	uc002gru.1	-	2	420	c.226C>G	c.(226-228)CCT>GCT	p.P76A	SREBF1_uc002grp.1_5'Flank|SREBF1_uc002grq.1_5'UTR|SREBF1_uc002grr.1_5'UTR|SREBF1_uc002grs.1_Missense_Mutation_p.P52A|SREBF1_uc002grt.1_Missense_Mutation_p.P106A|SREBF1_uc010cpp.1_Missense_Mutation_p.P52A|SREBF1_uc010cpq.1_Missense_Mutation_p.P76A	NM_004176	NP_004167	P36956	SRBP1_HUMAN	sterol regulatory element binding transcription	76	Pro/Ser-rich.|Cytoplasmic (Potential).				cellular response to starvation|cholesterol metabolic process|positive regulation of transcription from RNA polymerase II promoter|regulation of transcription from RNA polymerase II promoter	endoplasmic reticulum|endoplasmic reticulum membrane|ER to Golgi transport vesicle membrane|Golgi membrane|integral to membrane|nuclear envelope|nucleus	protein binding|protein binding|sequence-specific DNA binding transcription factor activity|sterol response element binding			skin(1)	1						AATGTGGCAGGAGGTGGAGAC	0.647000													6	60					0	0	1	0	0
SHMT1	6470	broad.mit.edu	37	17	18232688	18232688	+	Missense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr17:18232688G>C	uc002gta.2	-	11	1376	c.1186C>G	c.(1186-1188)CTG>GTG	p.L396V	SHMT1_uc002gsz.2_Missense_Mutation_p.L171V|SHMT1_uc002gtb.2_Missense_Mutation_p.L357V|SHMT1_uc010cqb.2_Intron|SHMT1_uc010vxt.1_Missense_Mutation_p.L258V	NM_004169	NP_004160	P34896	GLYC_HUMAN	serine hydroxymethyltransferase 1 (soluble)	396					carnitine biosynthetic process|folic acid metabolic process|L-serine catabolic process|one-carbon metabolic process|purine base biosynthetic process	cytosol|nucleus	glycine hydroxymethyltransferase activity|protein homodimerization activity|pyridoxal phosphate binding			ovary(1)	1					Glycine(DB00145)|Mimosine(DB01055)|Pyridoxal Phosphate(DB00114)|Tetrahydrofolic acid(DB00116)	CTGGGCCGCAGAGCGCTTCTG	0.512000													12	38					0	0	1	0	0
FAM18B	51030	broad.mit.edu	37	17	18702243	18702243	+	Missense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr17:18702243G>C	uc002gum.2	+	5	474	c.449G>C	c.(448-450)AGA>ACA	p.R150T	FAM18B_uc002gun.2_Missense_Mutation_p.R86T	NM_016078	NP_057162	Q9NYZ1	F18B1_HUMAN	hypothetical protein LOC51030	150						integral to membrane					0				UCEC - Uterine corpus endometrioid carcinoma (53;0.0872)|READ - Rectum adenocarcinoma(1115;0.0967)		TTCTCCTTCAGAGTAAAGTGG	0.393000													17	126					0	0	1	0	0
NOS2	4843	broad.mit.edu	37	17	26108115	26108115	+	Nonsense_Mutation	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr17:26108115G>A	uc002gzu.2	-	8	1075	c.811C>T	c.(811-813)CAG>TAG	p.Q271*	NOS2_uc010crh.1_Nonsense_Mutation_p.Q271*|NOS2_uc010wab.1_Nonsense_Mutation_p.Q271*	NM_000625	NP_000616	P35228	NOS2_HUMAN	nitric oxide synthase 2A	271					arginine catabolic process|defense response to Gram-negative bacterium|innate immune response in mucosa|nitric oxide biosynthetic process|peptidyl-cysteine S-nitrosylation|platelet activation|positive regulation of killing of cells of other organism|positive regulation of leukocyte mediated cytotoxicity|regulation of cellular respiration|regulation of insulin secretion|superoxide metabolic process	cytosol|nucleus	arginine binding|calmodulin binding|flavin adenine dinucleotide binding|FMN binding|heme binding|NADP binding|nitric-oxide synthase activity|protein homodimerization activity|tetrahydrobiopterin binding			skin(2)|ovary(1)|breast(1)	4					Dexamethasone(DB01234)|Hydrocortisone(DB00741)|L-Arginine(DB00125)|L-Citrulline(DB00155)	TCTGGCATCTGGTAGCCAGCA	0.642000													29	122					0	0	1	0	0
NEK8	284086	broad.mit.edu	37	17	27064452	27064452	+	Silent	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr17:27064452C>T	uc002hcp.2	+	5	747	c.747C>T	c.(745-747)CTC>CTT	p.L249L		NM_178170	NP_835464	Q86SG6	NEK8_HUMAN	NIMA-related kinase 8	249	Protein kinase.					cytoplasm|primary cilium	ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity			stomach(2)|ovary(1)|pancreas(1)|liver(1)|skin(1)	6	Lung NSC(42;0.0158)					GGCCACCACTCAGCCACATCA	0.642000													4	58					0	0	1	0	0
TAOK1	57551	broad.mit.edu	37	17	27869933	27869933	+	Missense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr17:27869933C>G	uc002hdz.1	+	20	3093	c.2899C>G	c.(2899-2901)CAG>GAG	p.Q967E	TAOK1_uc010wbe.1_Missense_Mutation_p.Q819E|TAOK1_uc010wbf.1_Missense_Mutation_p.Q967E	NM_020791	NP_065842	Q7L7X3	TAOK1_HUMAN	TAO kinase 1	967					mitotic prometaphase	cytosol|intracellular membrane-bounded organelle	ATP binding|protein serine/threonine kinase activity			upper_aerodigestive_tract(1)|lung(1)|central_nervous_system(1)|skin(1)	4			Colorectal(6;0.198)			CAATAGCCCCCAGGCTCTGAG	0.587000													11	40					0	0	1	0	0
ANKRD13B	124930	broad.mit.edu	37	17	27939913	27939913	+	Silent	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr17:27939913C>T	uc002hei.2	+	14	1697	c.1584C>T	c.(1582-1584)ATC>ATT	p.I528I	ANKRD13B_uc002heh.2_Silent_p.I396I|ANKRD13B_uc002hej.2_RNA|ANKRD13B_uc002hek.2_Silent_p.I38I	NM_152345	NP_689558	Q86YJ7	AN13B_HUMAN	ankyrin repeat domain 13B	528											0						AGGTCACCATCTGGGAGGCGC	0.706000													4	16					0	0	1	0	0
CORO6	84940	broad.mit.edu	37	17	27943334	27943334	+	Missense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr17:27943334C>G	uc002hel.2	-	8	1027	c.1025G>C	c.(1024-1026)AGA>ACA	p.R342T	CORO6_uc002hem.2_Missense_Mutation_p.R108T|CORO6_uc002hen.2_Missense_Mutation_p.R108T	NM_032854	NP_116243	Q6QEF8	CORO6_HUMAN	coronin 6	342					actin cytoskeleton organization	actin cytoskeleton	actin filament binding				0						TTCACACTTTCTTTCGTGTAG	0.577000													6	18					0	0	1	0	0
NF1	4763	broad.mit.edu	37	17	29560168	29560168	+	Missense_Mutation	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr17:29560168G>A	uc002hgg.2	+	27	3978	c.3645G>A	c.(3643-3645)ATG>ATA	p.M1215I	NF1_uc002hgh.2_Missense_Mutation_p.M1215I|NF1_uc010csn.1_Missense_Mutation_p.M1075I|NF1_uc002hgi.1_Missense_Mutation_p.M248I	NM_001042492	NP_001035957	P21359	NF1_HUMAN	neurofibromin isoform 1	1215					actin cytoskeleton organization|adrenal gland development|artery morphogenesis|camera-type eye morphogenesis|cerebral cortex development|collagen fibril organization|forebrain astrocyte development|forebrain morphogenesis|heart development|liver development|MAPKKK cascade|metanephros development|myelination in peripheral nervous system|negative regulation of cell migration|negative regulation of endothelial cell proliferation|negative regulation of MAP kinase activity|negative regulation of MAPKKK cascade|negative regulation of neuroblast proliferation|negative regulation of oligodendrocyte differentiation|negative regulation of transcription factor import into nucleus|osteoblast differentiation|phosphatidylinositol 3-kinase cascade|pigmentation|positive regulation of adenylate cyclase activity|positive regulation of neuron apoptosis|Ras protein signal transduction|regulation of blood vessel endothelial cell migration|regulation of bone resorption|response to hypoxia|smooth muscle tissue development|spinal cord development|sympathetic nervous system development|visual learning|wound healing	axon|cytoplasm|dendrite|intrinsic to internal side of plasma membrane|nucleus	protein binding|Ras GTPase activator activity	p.?(2)		soft_tissue(159)|central_nervous_system(56)|lung(28)|large_intestine(27)|haematopoietic_and_lymphoid_tissue(18)|ovary(18)|autonomic_ganglia(12)|breast(3)|skin(3)|stomach(2)|thyroid(1)|prostate(1)|kidney(1)|pancreas(1)	330		all_cancers(10;1.29e-12)|all_epithelial(10;0.00347)|all_hematologic(16;0.00556)|Acute lymphoblastic leukemia(14;0.00593)|Breast(31;0.014)|Myeloproliferative disorder(56;0.0255)|all_lung(9;0.0321)|Lung NSC(157;0.0659)		UCEC - Uterine corpus endometrioid carcinoma (4;4.38e-05)|all cancers(4;1.64e-26)|Epithelial(4;9.15e-23)|OV - Ovarian serous cystadenocarcinoma(4;3.58e-21)|GBM - Glioblastoma multiforme(4;0.00146)		TCACAATGATGGGTGATCAAG	0.428000			D|Mis|N|F|S|O		neurofibroma|glioma	neurofibroma|glioma			Neurofibromatosis_type_1	TCGA GBM(6;<1E-08)|TSP Lung(7;0.0071)|TCGA Ovarian(3;0.0088)			4	120					0	0	1	0	0
NF1	4763	broad.mit.edu	37	17	29663832	29663832	+	Silent	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr17:29663832C>T	uc002hgg.2	+	42	6660	c.6327C>T	c.(6325-6327)TTC>TTT	p.F2109F	NF1_uc002hgh.2_Silent_p.F2088F|NF1_uc010cso.2_Silent_p.F297F|NF1_uc010wbt.1_5'Flank|NF1_uc010wbu.1_5'Flank	NM_001042492	NP_001035957	P21359	NF1_HUMAN	neurofibromin isoform 1	2109					actin cytoskeleton organization|adrenal gland development|artery morphogenesis|camera-type eye morphogenesis|cerebral cortex development|collagen fibril organization|forebrain astrocyte development|forebrain morphogenesis|heart development|liver development|MAPKKK cascade|metanephros development|myelination in peripheral nervous system|negative regulation of cell migration|negative regulation of endothelial cell proliferation|negative regulation of MAP kinase activity|negative regulation of MAPKKK cascade|negative regulation of neuroblast proliferation|negative regulation of oligodendrocyte differentiation|negative regulation of transcription factor import into nucleus|osteoblast differentiation|phosphatidylinositol 3-kinase cascade|pigmentation|positive regulation of adenylate cyclase activity|positive regulation of neuron apoptosis|Ras protein signal transduction|regulation of blood vessel endothelial cell migration|regulation of bone resorption|response to hypoxia|smooth muscle tissue development|spinal cord development|sympathetic nervous system development|visual learning|wound healing	axon|cytoplasm|dendrite|intrinsic to internal side of plasma membrane|nucleus	protein binding|Ras GTPase activator activity			soft_tissue(159)|central_nervous_system(56)|lung(28)|large_intestine(27)|haematopoietic_and_lymphoid_tissue(18)|ovary(18)|autonomic_ganglia(12)|breast(3)|skin(3)|stomach(2)|thyroid(1)|prostate(1)|kidney(1)|pancreas(1)	330		all_cancers(10;1.29e-12)|all_epithelial(10;0.00347)|all_hematologic(16;0.00556)|Acute lymphoblastic leukemia(14;0.00593)|Breast(31;0.014)|Myeloproliferative disorder(56;0.0255)|all_lung(9;0.0321)|Lung NSC(157;0.0659)		UCEC - Uterine corpus endometrioid carcinoma (4;4.38e-05)|all cancers(4;1.64e-26)|Epithelial(4;9.15e-23)|OV - Ovarian serous cystadenocarcinoma(4;3.58e-21)|GBM - Glioblastoma multiforme(4;0.00146)		TTGTTACTTTCTTAGTAGCCA	0.438000			D|Mis|N|F|S|O		neurofibroma|glioma	neurofibroma|glioma			Neurofibromatosis_type_1	TCGA GBM(6;<1E-08)|TSP Lung(7;0.0071)|TCGA Ovarian(3;0.0088)			23	119					0	0	1	0	0
CCT6B	10693	broad.mit.edu	37	17	33266229	33266229	+	Missense_Mutation	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr17:33266229G>A	uc002hig.2	-	10	1280	c.1186C>T	c.(1186-1188)CGT>TGT	p.R396C	CCT6B_uc010ctg.2_Missense_Mutation_p.R359C|CCT6B_uc010wcc.1_Missense_Mutation_p.R351C	NM_006584	NP_006575	Q92526	TCPW_HUMAN	chaperonin containing TCP1, subunit 6B	396					chaperone-mediated protein complex assembly|protein folding|spermatogenesis	cytoplasm	ATP binding|protein transporter activity|unfolded protein binding			pancreas(1)	1		Ovarian(249;0.17)				TTGATAGCACGAAGTCCATCT	0.318000													68	209					0	0	1	0	0
SLFN5	162394	broad.mit.edu	37	17	33586072	33586072	+	Missense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr17:33586072G>C	uc002hjf.3	+	2	480	c.363G>C	c.(361-363)GAG>GAC	p.E121D	SLFN5_uc002hje.2_Missense_Mutation_p.E121D|SLFN5_uc010wcg.1_Missense_Mutation_p.E121D	NM_144975	NP_659412	Q08AF3	SLFN5_HUMAN	schlafen family member 5	121					cell differentiation		ATP binding			ovary(1)|central_nervous_system(1)|skin(1)	3		Ovarian(249;0.17)		UCEC - Uterine corpus endometrioid carcinoma (308;0.0191)		ACCACAGAGAGAGAACATCCA	0.428000													38	96					0	0	1	0	0
C17orf66	256957	broad.mit.edu	37	17	34185207	34185207	+	Missense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr17:34185207G>C	uc002hke.1	-	11	1298	c.1149C>G	c.(1147-1149)TTC>TTG	p.F383L	C17orf66_uc010wck.1_RNA|C17orf66_uc010wcl.1_Missense_Mutation_p.F343L|C17orf66_uc010wcm.1_Missense_Mutation_p.F349L	NM_152781	NP_689994	A2RTY3	CQ066_HUMAN	hypothetical protein LOC256957	383							binding			breast(2)|skin(1)	3		Ovarian(249;0.17)		UCEC - Uterine corpus endometrioid carcinoma (308;0.0184)		CACTTACAAGGAAGGGTTCAT	0.517000													61	194					0	0	1	0	0
AATF	26574	broad.mit.edu	37	17	35346666	35346666	+	Missense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr17:35346666G>C	uc002hni.2	+	7	1521	c.1270G>C	c.(1270-1272)GAG>CAG	p.E424Q	AATF_uc002hnj.2_RNA	NM_012138	NP_036270	Q9NY61	AATF_HUMAN	apoptosis antagonizing transcription factor	424	RB1 and SP1 binding.				anti-apoptosis|apoptosis|induction of apoptosis by extracellular signals|negative regulation of superoxide anion generation|nerve growth factor receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter|response to DNA damage stimulus	centrosome|focal adhesion|nucleolus	leucine zipper domain binding|sequence-specific DNA binding transcription factor activity				0		Breast(25;0.00607)				TGGCAAACCTGAGCCAGCAGC	0.468000													9	264					0	0	1	0	0
AATF	26574	broad.mit.edu	37	17	35346678	35346678	+	Nonsense_Mutation	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr17:35346678C>T	uc002hni.2	+	7	1533	c.1282C>T	c.(1282-1284)CAG>TAG	p.Q428*	AATF_uc002hnj.2_RNA	NM_012138	NP_036270	Q9NY61	AATF_HUMAN	apoptosis antagonizing transcription factor	428	RB1 and SP1 binding.				anti-apoptosis|apoptosis|induction of apoptosis by extracellular signals|negative regulation of superoxide anion generation|nerve growth factor receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter|response to DNA damage stimulus	centrosome|focal adhesion|nucleolus	leucine zipper domain binding|sequence-specific DNA binding transcription factor activity				0		Breast(25;0.00607)				GCCAGCAGCTCAGCCTGTCCC	0.463000													48	231					0	0	1	0	0
HNF1B	6928	broad.mit.edu	37	17	36099554	36099554	+	Missense_Mutation	SNP	C	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr17:36099554C>A	uc002hok.3	-	2	642	c.421G>T	c.(421-423)GAT>TAT	p.D141Y	HNF1B_uc010wdi.1_Missense_Mutation_p.D141Y	NM_000458	NP_000449	P35680	HNF1B_HUMAN	hepatocyte nuclear factor 1-beta isoform 1	141					endocrine pancreas development|genitalia development|kidney development|positive regulation of transcription initiation from RNA polymerase II promoter|positive regulation of transcription, DNA-dependent|pronephric nephron tubule development|regulation of pronephros size	nucleus	DNA binding|protein homodimerization activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(3)	3		Breast(25;0.00765)|Ovarian(249;0.15)	STAD - Stomach adenocarcinoma(1;0.0142)			CCGGTGACATCGACCACCTCC	0.557000									Hereditary_Prostate_Cancer				4	75					0.00024832	0.000252469	1	1	0
GPR179	440435	broad.mit.edu	37	17	36485974	36485974	+	Missense_Mutation	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr17:36485974G>A	uc002hpz.2	-	11	3499	c.3478C>T	c.(3478-3480)CAC>TAC	p.H1160Y		NM_001004334	NP_001004334	Q6PRD1	GP179_HUMAN	GPR158-like 1 precursor	1160	Cytoplasmic (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(3)	3	Breast(7;2.97e-12)	Breast(25;0.0101)|Ovarian(249;0.15)				CTGCTGGTGTGAGCGTTCTGT	0.607000													73	208					0	0	1	0	0
GPR179	440435	broad.mit.edu	37	17	36498924	36498924	+	Missense_Mutation	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr17:36498924G>A	uc002hpz.2	-	1	770	c.749C>T	c.(748-750)TCT>TTT	p.S250F		NM_001004334	NP_001004334	Q6PRD1	GP179_HUMAN	GPR158-like 1 precursor	250	Extracellular (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(3)	3	Breast(7;2.97e-12)	Breast(25;0.0101)|Ovarian(249;0.15)				GAAGGTGGCAGAGAGTGTGAT	0.562000													39	104					0	0	1	0	0
Unknown	0	broad.mit.edu	37	17	37188224	37188224	+	RNA	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr17:37188224C>G	uc002hrd.1	+	1		c.2066C>G								Homo sapiens cDNA FLJ43826 fis, clone TESTI4002703.																		AAACCTGACTCAAGTCACAGT	0.512000													49	58					0	0	1	0	0
FBXL20	84961	broad.mit.edu	37	17	37499465	37499465	+	Missense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr17:37499465G>C	uc010wed.1	-	2	293	c.72C>G	c.(70-72)ATC>ATG	p.I24M	FBXL20_uc002hrt.2_Missense_Mutation_p.I24M|FBXL20_uc010cvu.2_Missense_Mutation_p.I24M	NM_032875	NP_116264	Q96IG2	FXL20_HUMAN	F-box and leucine-rich repeat protein 20	24	F-box.					cytoplasm				ovary(1)	1			LUAD - Lung adenocarcinoma(14;0.146)			GTTTTTTATTGATTACAGCTT	0.284000													10	52					0	0	1	0	0
MED1	5469	broad.mit.edu	37	17	37565328	37565328	+	Missense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr17:37565328G>C	uc002hrv.3	-	17	3358	c.3146C>G	c.(3145-3147)TCT>TGT	p.S1049C	MED1_uc010wee.1_Missense_Mutation_p.S877C|MED1_uc002hru.2_Intron	NM_004774	NP_004765	Q15648	MED1_HUMAN	mediator complex subunit 1	1049	Interaction with ESR1.				androgen biosynthetic process|androgen receptor signaling pathway|cellular lipid metabolic process|fat cell differentiation|positive regulation of transcription from RNA polymerase II promoter|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor|transcription initiation from RNA polymerase II promoter	mediator complex	DNA binding|estrogen receptor binding|ligand-dependent nuclear receptor binding|ligand-dependent nuclear receptor transcription coactivator activity|peroxisome proliferator activated receptor binding|receptor activity|retinoic acid receptor binding|RNA polymerase II transcription cofactor activity|thyroid hormone receptor binding|vitamin D receptor binding			lung(2)|ovary(2)|breast(1)|skin(1)|kidney(1)|pancreas(1)	8		Ovarian(249;1.78e-06)|Lung SC(565;0.0262)	Lung(15;0.0178)|LUAD - Lung adenocarcinoma(14;0.146)	UCEC - Uterine corpus endometrioid carcinoma (308;6.64e-05)|BRCA - Breast invasive adenocarcinoma(366;0.00136)|READ - Rectum adenocarcinoma(1115;0.0649)		GGGAGTCTGAGATCTTCCTGC	0.502000										HNSCC(31;0.082)			41	167					0	0	1	0	0
TNS4	84951	broad.mit.edu	37	17	38645158	38645158	+	Missense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr17:38645158G>C	uc010cxb.2	-	3	667	c.503C>G	c.(502-504)TCC>TGC	p.S168C		NM_032865	NP_116254	Q8IZW8	TENS4_HUMAN	tensin 4 precursor	168	Ser-rich.				apoptosis|protein localization	cytoplasm|cytoskeleton|focal adhesion	actin binding			large_intestine(1)|ovary(1)|central_nervous_system(1)|skin(1)	4		Breast(137;0.000496)	STAD - Stomach adenocarcinoma(5;5.91e-05)			AGAGGGGCTGGAGCAGTGCTG	0.602000													8	137					0	0	1	0	0
SMARCE1	6605	broad.mit.edu	37	17	38785188	38785188	+	Missense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr17:38785188G>C	uc002hux.2	-	11	1209	c.1085C>G	c.(1084-1086)TCT>TGT	p.S362C	SMARCE1_uc010wff.1_3'UTR|SMARCE1_uc010wfg.1_3'UTR|SMARCE1_uc002huy.2_Missense_Mutation_p.S327C|SMARCE1_uc010wfh.1_Missense_Mutation_p.S292C|SMARCE1_uc010wfi.1_Missense_Mutation_p.S344C	NM_003079	NP_003070	Q969G3	SMCE1_HUMAN	SWI/SNF-related matrix-associated	362	Glu-rich.				chromatin modification|negative regulation of transcription, DNA-dependent|nervous system development|nucleosome disassembly|regulation of transcription from RNA polymerase II promoter	nBAF complex|npBAF complex|nuclear chromosome|SWI/SNF complex|transcriptional repressor complex	chromatin binding|DNA binding|N-acetyltransferase activity|protein binding|protein N-terminus binding|transcription coactivator activity				0		Breast(137;0.000812)				CTCAGGAGTAGACGTGCCTTC	0.488000													5	151					0	0	1	0	0
KRT31	3881	broad.mit.edu	37	17	39550303	39550303	+	Missense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr17:39550303G>C	uc002hwn.2	-	7	1269	c.1216C>G	c.(1216-1218)CCC>GCC	p.P406A	KRT31_uc010cxn.2_3'UTR	NM_002277	NP_002268	Q15323	K1H1_HUMAN	keratin 31	406	Tail.				epidermis development	intermediate filament	protein binding|structural constituent of cytoskeleton				0		Breast(137;0.000496)				CCACAGCGGGGGCGTGGGGCA	0.637000													23	76					0	0	1	0	0
FKBP10	60681	broad.mit.edu	37	17	39969496	39969496	+	Silent	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr17:39969496C>T	uc002hxv.2	+	1	535	c.210C>T	c.(208-210)AAC>AAT	p.N70N	SC65_uc002hxt.2_5'Flank|SC65_uc002hxu.2_5'Flank	NM_021939	NP_068758	Q96AY3	FKB10_HUMAN	FK506 binding protein 10 precursor	70	PPIase FKBP-type 1.				protein folding	endoplasmic reticulum lumen|membrane	calcium ion binding|FK506 binding|peptidyl-prolyl cis-trans isomerase activity			ovary(1)	1		Breast(137;0.00122)		BRCA - Breast invasive adenocarcinoma(366;0.148)		ACCACTACAACGGCACTTTTG	0.537000													5	219					0	0	1	0	0
ACLY	47	broad.mit.edu	37	17	40054047	40054047	+	Missense_Mutation	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr17:40054047C>T	uc002hyg.2	-	13	1547	c.1384G>A	c.(1384-1386)GAT>AAT	p.D462N	ACLY_uc002hyh.2_Missense_Mutation_p.D462N|ACLY_uc002hyi.2_Missense_Mutation_p.D516N|ACLY_uc010wfx.1_Missense_Mutation_p.D516N|ACLY_uc010wfy.1_Missense_Mutation_p.D201N	NM_001096	NP_001087	P53396	ACLY_HUMAN	ATP citrate lyase isoform 1	462					ATP catabolic process|cellular carbohydrate metabolic process|citrate metabolic process|coenzyme A metabolic process|energy reserve metabolic process|long-chain fatty-acyl-CoA biosynthetic process|positive regulation of cellular metabolic process|triglyceride biosynthetic process	citrate lyase complex|cytosol|nucleus	ATP binding|ATP citrate synthase activity|citrate (pro-3S)-lyase activity|metal ion binding|protein binding|succinate-CoA ligase (ADP-forming) activity			ovary(2)|central_nervous_system(1)	3		Breast(137;0.000143)				GCCACCTCATCGGCCCTGGAC	0.572000													5	28					0	0	1	0	0
GHDC	84514	broad.mit.edu	37	17	40342259	40342259	+	Missense_Mutation	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr17:40342259C>T	uc002hzd.2	-	8	1802	c.1318G>A	c.(1318-1320)GAG>AAG	p.E440K	GHDC_uc002hzg.1_Missense_Mutation_p.E440K|GHDC_uc010wgg.1_Missense_Mutation_p.E401K|GHDC_uc002hze.3_Silent_p.T469T|GHDC_uc002hzf.3_Missense_Mutation_p.E440K	NM_032484	NP_115873	Q8N2G8	GHDC_HUMAN	LGP1 homolog isoform 1	440						endoplasmic reticulum|nuclear envelope					0		all_cancers(22;0.000229)|Breast(137;0.00104)|all_epithelial(22;0.00304)		BRCA - Breast invasive adenocarcinoma(366;0.124)		ACAAACACCTCGTAGTGGGGA	0.557000													30	146					0	0	1	0	0
RPL27	6155	broad.mit.edu	37	17	41154798	41154798	+	Missense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr17:41154798G>C	uc002icj.2	+	4	405	c.360G>C	c.(358-360)GAG>GAC	p.E120D	RPL27_uc002ick.2_Missense_Mutation_p.E120D	NM_000988	NP_000979	P61353	RL27_HUMAN	ribosomal protein L27	120					endocrine pancreas development|translational elongation|translational termination|viral transcription	cytosol|ribosome	structural constituent of ribosome				0		Breast(137;0.000717)|Ovarian(249;0.0776)		BRCA - Breast invasive adenocarcinoma(366;0.157)		AGTTTGAAGAGAGGTAAGTAG	0.448000													24	129					0	0	1	0	0
BRCA1	672	broad.mit.edu	37	17	41226417	41226417	+	Missense_Mutation	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr17:41226417C>T	uc002icq.2	-	14	4838	c.4606G>A	c.(4606-4608)GAG>AAG	p.E1536K	BRCA1_uc010whp.1_Missense_Mutation_p.E385K|BRCA1_uc010whl.1_Missense_Mutation_p.E432K|BRCA1_uc010whm.1_Intron|BRCA1_uc002icp.3_Missense_Mutation_p.E1465K|BRCA1_uc002icu.2_Missense_Mutation_p.E432K|BRCA1_uc010cyx.2_Missense_Mutation_p.E1489K|BRCA1_uc002ict.2_Missense_Mutation_p.E1557K|BRCA1_uc010whn.1_Missense_Mutation_p.E27K|BRCA1_uc010who.1_Intron|BRCA1_uc010whq.1_Missense_Mutation_p.E265K|BRCA1_uc002idc.1_Missense_Mutation_p.E432K|BRCA1_uc010whr.1_Missense_Mutation_p.E386K	NM_007294	NP_009225	P38398	BRCA1_HUMAN	breast cancer 1, early onset isoform 1	1536					androgen receptor signaling pathway|apoptosis|cellular response to indole-3-methanol|chromosome segregation|DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator|DNA damage response, signal transduction resulting in induction of apoptosis|double-strand break repair via homologous recombination|fatty acid biosynthetic process|G2/M transition DNA damage checkpoint|negative regulation of centriole replication|negative regulation of fatty acid biosynthetic process|negative regulation of histone H3-K9 methylation|negative regulation of transcription, DNA-dependent|positive regulation of cell cycle arrest|positive regulation of DNA repair|positive regulation of histone acetylation|positive regulation of histone H3-K4 methylation|positive regulation of histone H4-K20 methylation|positive regulation of protein ubiquitination|positive regulation of transcription from RNA polymerase II promoter|postreplication repair|protein autoubiquitination|protein K6-linked ubiquitination|regulation of cell motility|regulation of cell proliferation|regulation of transcription from RNA polymerase III promoter|response to estrogen stimulus|response to ionizing radiation|substrate adhesion-dependent cell spreading	BRCA1-A complex|BRCA1-BARD1 complex|gamma-tubulin ring complex|nucleoplasm|plasma membrane|ribonucleoprotein complex|ruffle	androgen receptor binding|identical protein binding|protein binding|RNA binding|transcription coactivator activity|transcription regulatory region DNA binding|tubulin binding|ubiquitin protein ligase binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(24)|breast(21)|lung(4)|central_nervous_system(1)|endometrium(1)|urinary_tract(1)	52		Breast(137;0.000717)		BRCA - Breast invasive adenocarcinoma(366;0.126)		AGCTGTTGCTCCTCCACATCA	0.438000			D|Mis|N|F|S		ovarian	breast|ovarian		Homologous_recombination	Hereditary_Breast-Ovarian_Cancer_BRCA1_type	TCGA Ovarian(2;0.000030)			16	80					0	0	1	0	0
NBR1	4077	broad.mit.edu	37	17	41345409	41345409	+	Missense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr17:41345409G>C	uc010czd.2	+	12	1418	c.1278G>C	c.(1276-1278)AAG>AAC	p.K426N	NBR1_uc010diz.2_Missense_Mutation_p.K426N|NBR1_uc010whu.1_Missense_Mutation_p.K426N|NBR1_uc010whv.1_Missense_Mutation_p.K426N|NBR1_uc010whw.1_Missense_Mutation_p.K405N|NBR1_uc010whx.1_Missense_Mutation_p.K235N	NM_031862	NP_114068	Q14596	NBR1_HUMAN	neighbor of BRCA1 gene 1	426					macroautophagy|protein oligomerization	autophagic vacuole|cytoplasmic vesicle|cytosol|late endosome|lysosome|sarcomere	ubiquitin binding|zinc ion binding			skin(1)	1		Breast(137;0.00086)		BRCA - Breast invasive adenocarcinoma(366;0.0934)		CCACAGAAAAGAAGGATGTTT	0.498000													18	37					0	0	1	0	0
DCAKD	79877	broad.mit.edu	37	17	43101914	43101914	+	Missense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr17:43101914C>G	uc002ihx.2	-	4	839	c.583G>C	c.(583-585)GAG>CAG	p.E195Q	DCAKD_uc010daa.1_Missense_Mutation_p.E195Q|DCAKD_uc010dab.1_Missense_Mutation_p.E195Q	NM_024819	NP_079095	Q8WVC6	DCAKD_HUMAN	dephospho-CoA kinase domain containing	195	DPCK.				coenzyme A biosynthetic process		ATP binding|dephospho-CoA kinase activity				0		Prostate(33;0.155)				CGCTCCAGCTCAGTGTGCAAG	0.627000													22	59					0	0	1	0	0
ITGB3	3690	broad.mit.edu	37	17	45368382	45368382	+	Missense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr17:45368382C>G	uc002ilj.2	+	9	1208	c.1188C>G	c.(1186-1188)TTC>TTG	p.F396L	ITGB3_uc002ili.1_Missense_Mutation_p.F396L|ITGB3_uc010wkr.1_RNA	NM_000212	NP_000203	P05106	ITB3_HUMAN	integrin beta chain, beta 3 precursor	396	Extracellular (Potential).				activation of protein kinase activity|angiogenesis involved in wound healing|axon guidance|cell-matrix adhesion|integrin-mediated signaling pathway|interspecies interaction between organisms|leukocyte migration|negative regulation of lipid storage|negative regulation of lipid transport|negative regulation of lipoprotein metabolic process|negative regulation of low-density lipoprotein particle receptor biosynthetic process|negative regulation of macrophage derived foam cell differentiation|platelet activation|platelet degranulation|positive regulation of endothelial cell migration|positive regulation of endothelial cell proliferation|positive regulation of peptidyl-tyrosine phosphorylation|positive regulation of vascular endothelial growth factor receptor signaling pathway|regulation of bone resorption|smooth muscle cell migration|tube development	alphav-beta3 integrin-vitronectin complex|integrin complex|platelet alpha granule membrane	cell adhesion molecule binding|identical protein binding|platelet-derived growth factor receptor binding|receptor activity|vascular endothelial growth factor receptor 2 binding			central_nervous_system(5)|large_intestine(1)	6					Abciximab(DB00054)|Tirofiban(DB00775)	CTCTATCCTTCAATGCCACCT	0.507000													35	109					0	0	1	0	0
SCRN2	90507	broad.mit.edu	37	17	45918126	45918126	+	Silent	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr17:45918126G>A	uc002imd.2	-	2	210	c.84C>T	c.(82-84)ATC>ATT	p.I28I	SCRN2_uc002imc.2_Silent_p.I36I|SCRN2_uc002imf.2_Silent_p.I28I|SCRN2_uc002ime.2_RNA	NM_138355	NP_612364	Q96FV2	SCRN2_HUMAN	secernin 2 isoform 1	28					proteolysis		dipeptidase activity			ovary(1)	1						TCTTGGCAAAGATCACAGCCG	0.662000													6	31					0	0	1	0	0
CDK5RAP3	80279	broad.mit.edu	37	17	46052532	46052532	+	Silent	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr17:46052532C>G	uc002imr.2	+	6	426	c.342C>G	c.(340-342)CTC>CTG	p.L114L	CDK5RAP3_uc010wlc.1_Silent_p.L134L|CDK5RAP3_uc002imq.1_5'UTR|CDK5RAP3_uc002imu.2_5'UTR|CDK5RAP3_uc002ims.2_Silent_p.L27L|CDK5RAP3_uc002imv.2_5'UTR|CDK5RAP3_uc002imw.2_5'UTR|CDK5RAP3_uc002imx.2_5'UTR	NM_176096	NP_788276	Q96JB5	CK5P3_HUMAN	CDK5 regulatory subunit associated protein 3	114					brain development|regulation of cyclin-dependent protein kinase activity|regulation of neuron differentiation		neuronal Cdc2-like kinase binding				0						CAGTGGAACTCTCTAGCCTCC	0.552000													32	146					0	0	1	0	0
CDK5RAP3	80279	broad.mit.edu	37	17	46052645	46052645	+	Missense_Mutation	SNP	C	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr17:46052645C>A	uc002imr.2	+	6	539	c.455C>A	c.(454-456)GCA>GAA	p.A152E	CDK5RAP3_uc010wlc.1_Missense_Mutation_p.A172E|CDK5RAP3_uc002imq.1_5'UTR|CDK5RAP3_uc002imu.2_5'UTR|CDK5RAP3_uc002ims.2_Missense_Mutation_p.A65E|CDK5RAP3_uc002imv.2_5'UTR|CDK5RAP3_uc002imw.2_5'UTR|CDK5RAP3_uc002imx.2_5'UTR	NM_176096	NP_788276	Q96JB5	CK5P3_HUMAN	CDK5 regulatory subunit associated protein 3	152					brain development|regulation of cyclin-dependent protein kinase activity|regulation of neuron differentiation		neuronal Cdc2-like kinase binding				0						GAGTGCCAGGCAGGGGCTGCC	0.597000													31	58					2.40579e-17	2.50634e-17	1	1	0
NFE2L1	4779	broad.mit.edu	37	17	46135815	46135815	+	Silent	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr17:46135815C>G	uc002imz.3	+	6	1782	c.1131C>G	c.(1129-1131)CTC>CTG	p.L377L	NFE2L1_uc002ina.3_Silent_p.L347L|NFE2L1_uc002inb.3_Silent_p.L347L|NFE2L1_uc010wle.1_Silent_p.L189L|NFE2L1_uc010wlf.1_Silent_p.L221L	NM_003204	NP_003195	Q14494	NF2L1_HUMAN	nuclear factor erythroid 2-like 1	377					anatomical structure morphogenesis|heme biosynthetic process|inflammatory response|transcription from RNA polymerase II promoter	nucleus	protein dimerization activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription cofactor activity			skin(1)	1						ACTTCTTACTCTTCAGCCCCG	0.607000													48	147					0	0	1	0	0
SNX11	29916	broad.mit.edu	37	17	46196369	46196369	+	Missense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr17:46196369C>G	uc002inf.1	+	7	714	c.360C>G	c.(358-360)AGC>AGG	p.S120R	SNX11_uc010wlg.1_Missense_Mutation_p.S112R|SNX11_uc010wlh.1_Missense_Mutation_p.S112R|SNX11_uc010wli.1_Missense_Mutation_p.S59R|SNX11_uc010wlj.1_5'UTR|SNX11_uc002ing.1_Missense_Mutation_p.S120R|SNX11_uc002inh.1_Missense_Mutation_p.S120R	NM_152244	NP_689450	Q9Y5W9	SNX11_HUMAN	sorting nexin 11	120	PX.				cell communication|protein transport	membrane	phosphatidylinositol binding				0						TGTCAGACAGCCAGTTGCACC	0.537000													43	116					0	0	1	0	0
CALCOCO2	10241	broad.mit.edu	37	17	46933542	46933542	+	Missense_Mutation	SNP	A	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr17:46933542A>G	uc002iof.2	+	10	1080	c.1001A>G	c.(1000-1002)GAA>GGA	p.E334G	CALCOCO2_uc010wlp.1_Missense_Mutation_p.E355G|CALCOCO2_uc010wlq.1_Missense_Mutation_p.E262G|CALCOCO2_uc010wlr.1_Missense_Mutation_p.E358G|CALCOCO2_uc010wls.1_Missense_Mutation_p.E292G	NM_005831	NP_005822	Q13137	CACO2_HUMAN	calcium binding and coiled-coil domain 2	334	Potential.				response to interferon-gamma|viral reproduction	cytoskeleton|Golgi apparatus|nucleus|perinuclear region of cytoplasm|soluble fraction	protein homodimerization activity			ovary(1)	1						TTGGAAGGAGAAAATGATGTA	0.383000													11	37					0	0	1	0	0
WFIKKN2	124857	broad.mit.edu	37	17	48917322	48917322	+	Missense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr17:48917322G>C	uc002isv.3	+	2	1367	c.673G>C	c.(673-675)GAG>CAG	p.E225Q	WFIKKN2_uc010dbu.2_Missense_Mutation_p.E132Q	NM_175575	NP_783165	Q8TEU8	WFKN2_HUMAN	WFIKKN2 protein	225	Ig-like C2-type.					extracellular region	metalloendopeptidase inhibitor activity|protein binding|serine-type endopeptidase inhibitor activity			ovary(2)|skin(1)	3			BRCA - Breast invasive adenocarcinoma(22;1.09e-08)			CACCATGGGTGAGACAGTGAG	0.637000													15	67					0	0	1	0	0
MBTD1	54799	broad.mit.edu	37	17	49284274	49284274	+	Missense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr17:49284274C>G	uc002itr.3	-	7	923	c.579G>C	c.(577-579)TGG>TGC	p.W193C	MBTD1_uc002itp.3_Missense_Mutation_p.W29C|MBTD1_uc002itq.3_Missense_Mutation_p.W193C	NM_017643	NP_060113	Q05BQ5	MBTD1_HUMAN	mbt domain containing 1	193	MBT 1.				chromatin modification|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	zinc ion binding			ovary(2)	2			BRCA - Breast invasive adenocarcinoma(22;1.54e-08)			TTCCAGCAATCCAGAAGACTT	0.398000													16	66					0	0	1	0	0
CA10	56934	broad.mit.edu	37	17	49710951	49710951	+	Missense_Mutation	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr17:49710951C>T	uc002itw.3	-	8	1836	c.850G>A	c.(850-852)GAC>AAC	p.D284N	CA10_uc002itu.3_Missense_Mutation_p.D213N|CA10_uc002itv.3_Missense_Mutation_p.D290N|CA10_uc002itx.3_Missense_Mutation_p.D284N|CA10_uc002ity.3_Missense_Mutation_p.D284N|CA10_uc002itz.2_Missense_Mutation_p.D284N	NM_020178	NP_064563	Q9NS85	CAH10_HUMAN	carbonic anhydrase X	284					brain development					ovary(1)|skin(1)	2			BRCA - Breast invasive adenocarcinoma(22;4.74e-06)			CTGAAGTTGTCACTCATGCTC	0.527000													20	45					0	0	1	0	0
TOM1L1	10040	broad.mit.edu	37	17	53016346	53016346	+	Missense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr17:53016346G>C	uc002iud.2	+	11	1270	c.1095G>C	c.(1093-1095)ATG>ATC	p.M365I	TOM1L1_uc010dca.1_Missense_Mutation_p.M365I|TOM1L1_uc010wnb.1_Missense_Mutation_p.M358I|TOM1L1_uc010wnc.1_Missense_Mutation_p.M288I|TOM1L1_uc010dbz.2_Missense_Mutation_p.M288I|TOM1L1_uc010wnd.1_Missense_Mutation_p.M253I|TOM1L1_uc010dcb.1_RNA	NM_005486	NP_005477	O75674	TM1L1_HUMAN	target of myb1-like 1	365					intracellular protein transport|ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway	cytosol|endosome membrane|Golgi stack|lysosome	SH3 domain binding|ubiquitin binding			ovary(1)	1						ATCCACAGATGAACTTGCTAG	0.353000													28	67					0	0	1	0	0
ANKFN1	162282	broad.mit.edu	37	17	54526454	54526454	+	Missense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr17:54526454G>C	uc002iun.1	+	10	1158	c.1123G>C	c.(1123-1125)GAC>CAC	p.D375H		NM_153228	NP_694960	Q8N957	ANKF1_HUMAN	ankyrin-repeat and fibronectin type III domain	375										large_intestine(1)|ovary(1)	2						GAAAGACTATGACGACAGAGA	0.488000													38	105					0	0	1	0	0
LPO	4025	broad.mit.edu	37	17	56324982	56324982	+	Missense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr17:56324982C>G	uc002ivt.2	+	4	624	c.308C>G	c.(307-309)TCC>TGC	p.S103C	LPO_uc010dco.2_Missense_Mutation_p.S103C|LPO_uc010wnr.1_Intron|LPO_uc010wns.1_Missense_Mutation_p.S44C|LPO_uc010dcp.2_Intron|LPO_uc010dcq.2_5'Flank	NM_006151	NP_006142	P22079	PERL_HUMAN	lactoperoxidase isoform 1 preproprotein	103					hydrogen peroxide catabolic process	extracellular space	heme binding|peroxidase activity			ovary(1)|breast(1)	2						CAGAAGGCATCCTTGACCAAT	0.557000													20	79					0	0	1	0	0
C17orf71	55181	broad.mit.edu	37	17	57292318	57292318	+	Missense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr17:57292318G>C	uc002ixi.2	+	4	2973	c.2931G>C	c.(2929-2931)ATG>ATC	p.M977I		NM_018149	NP_060619	Q8ND04	SMG8_HUMAN	SMG8 protein	977					nuclear-transcribed mRNA catabolic process, nonsense-mediated decay|regulation of protein kinase activity		protein binding				0	all_neural(34;0.0837)|Medulloblastoma(34;0.0922)					TGCAGTTAATGAGCTACAAGG	0.433000													20	89					0	0	1	0	0
TMEM49	81671	broad.mit.edu	37	17	57889099	57889099	+	Silent	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr17:57889099C>T	uc002ixu.3	+	9	1137	c.864C>T	c.(862-864)TTC>TTT	p.F288F	TMEM49_uc010wog.1_Silent_p.F96F|TMEM49_uc010woh.1_Silent_p.F232F|TMEM49_uc010woi.1_Silent_p.F191F|TMEM49_uc010woj.1_Silent_p.F154F	NM_030938	NP_112200	Q96GC9	VMP1_HUMAN	transmembrane protein 49	288	Helical; (Potential).				autophagy|cell adhesion	endoplasmic reticulum|ER-Golgi intermediate compartment membrane|integral to membrane|plasma membrane|vacuolar membrane					0	all_neural(34;0.0878)|Medulloblastoma(34;0.0922)		Epithelial(12;1.15e-09)|all cancers(12;1.15e-08)			TTTGGACCTTCTTTGGTGCAA	0.373000													36	108					0	0	1	0	0
C17orf82	388407	broad.mit.edu	37	17	59489402	59489402	+	Silent	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr17:59489402C>G	uc002izh.1	+	1	291	c.66C>G	c.(64-66)CTC>CTG	p.L22L		NM_203425	NP_982249	Q86X59	CQ082_HUMAN	hypothetical protein LOC388407	22											0						CTGCCTTCCTCCGCTCTGGGA	0.667000											OREG0024630	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	13	42					0	0	1	0	0
INTS2	57508	broad.mit.edu	37	17	59958414	59958414	+	Silent	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr17:59958414G>C	uc002izn.2	-	17	2308	c.2232C>G	c.(2230-2232)CTC>CTG	p.L744L	INTS2_uc002izm.2_Silent_p.L736L	NM_020748	NP_065799	Q9H0H0	INT2_HUMAN	integrator complex subunit 2	744					snRNA processing	integral to membrane|integrator complex|nuclear membrane	protein binding			ovary(1)|lung(1)|pancreas(1)	3						TATTAGTCAGGAGCATTCGCC	0.398000													3	81					0	0	1	0	0
INTS2	57508	broad.mit.edu	37	17	59999170	59999170	+	Missense_Mutation	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr17:59999170C>T	uc002izn.2	-	4	551	c.475G>A	c.(475-477)GAA>AAA	p.E159K	INTS2_uc002izm.2_Missense_Mutation_p.E151K	NM_020748	NP_065799	Q9H0H0	INT2_HUMAN	integrator complex subunit 2	159					snRNA processing	integral to membrane|integrator complex|nuclear membrane	protein binding			ovary(1)|lung(1)|pancreas(1)	3						AAAAAAAATTCTCCGTTGGAC	0.308000													11	42					0	0	1	0	0
EFCAB3	146779	broad.mit.edu	37	17	60491167	60491167	+	Missense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr17:60491167G>C	uc002izu.1	+	9	1020	c.942G>C	c.(940-942)AAG>AAC	p.K314N	EFCAB3_uc010wpc.1_Missense_Mutation_p.K366N	NM_173503	NP_775774	Q8N7B9	EFCB3_HUMAN	EF-hand calcium binding domain 3 isoform b	314							calcium ion binding			skin(1)	1			BRCA - Breast invasive adenocarcinoma(2;2.27e-11)			AAATGCTCAAGAAAAAGCAGA	0.363000													18	82					0	0	1	0	0
SCN4A	6329	broad.mit.edu	37	17	62034657	62034657	+	Missense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr17:62034657G>C	uc002jds.1	-	13	2318	c.2241C>G	c.(2239-2241)TTC>TTG	p.F747L		NM_000334	NP_000325	P35499	SCN4A_HUMAN	voltage-gated sodium channel type 4 alpha	747	II.				muscle contraction	voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(1)|pancreas(1)|skin(1)	3					Lamotrigine(DB00555)	AGGAGTGGAAGAAATCATGCA	0.597000													9	42					0	0	1	0	0
DDX5	1655	broad.mit.edu	37	17	62500815	62500815	+	Missense_Mutation	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr17:62500815C>T	uc002jek.2	-	2	437	c.190G>A	c.(190-192)GAT>AAT	p.D64N	CCDC45_uc002jem.2_5'Flank|CCDC45_uc002jen.2_5'Flank|CCDC45_uc010wqb.1_5'Flank|DDX5_uc010deh.2_Missense_Mutation_p.D64N|DDX5_uc002jej.2_5'UTR|DDX5_uc010wqa.1_Missense_Mutation_p.D64N|DDX5_uc002jel.1_5'Flank	NM_004396	NP_004387	P17844	DDX5_HUMAN	DEAD (Asp-Glu-Ala-Asp) box polypeptide 5	64					cell growth|regulation of alternative nuclear mRNA splicing, via spliceosome	catalytic step 2 spliceosome|nucleolus	ATP binding|ATP-dependent helicase activity|mRNA binding|protein binding|RNA helicase activity|transcription cofactor activity			ovary(2)|lung(1)	3	Breast(5;2.15e-14)		BRCA - Breast invasive adenocarcinoma(8;8.6e-12)			CTAGCCAAATCAGGGTGCTCT	0.403000			T	ETV4	prostate								24	116					0	0	1	0	0
PLEKHM1P	440456	broad.mit.edu	37	17	62788592	62788592	+	Silent	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr17:62788592C>T	uc002jew.3	-	8	2048	c.1137G>A	c.(1135-1137)GTG>GTA	p.V379V	PLEKHM1P_uc002jev.3_RNA	NR_024386				RecName: Full=Putative pleckstrin homology domain-containing family M member 1P;												0						GAGACGCGTTCACCATCTGCA	0.617000													41	139					0	0	1	0	0
PRKCA	5578	broad.mit.edu	37	17	64784999	64784999	+	Missense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr17:64784999G>C	uc002jfp.1	+	16	1800	c.1756G>C	c.(1756-1758)GAG>CAG	p.E586Q		NM_002737	NP_002728	P17252	KPCA_HUMAN	protein kinase C, alpha	586	Protein kinase.				activation of phospholipase C activity|energy reserve metabolic process|induction of apoptosis by extracellular signals|intracellular signal transduction|mRNA metabolic process|nerve growth factor receptor signaling pathway|platelet activation|positive regulation of blood vessel endothelial cell migration|regulation of insulin secretion|response to interleukin-1|synaptic transmission	cytosol|endoplasmic reticulum|membrane fraction|nucleoplasm|plasma membrane	ATP binding|enzyme binding|histone kinase activity (H3-T6 specific)|protein kinase C activity|zinc ion binding			central_nervous_system(4)|large_intestine(1)|stomach(1)|lung(1)|breast(1)|ovary(1)	9			BRCA - Breast invasive adenocarcinoma(6;4.68e-09)		Phosphatidylserine(DB00144)|Vitamin E(DB00163)	CTGTGGGCCTGAGGGGGAGAG	0.552000													4	165					0	0	1	0	0
KPNA2	3838	broad.mit.edu	37	17	66038376	66038376	+	Missense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr17:66038376G>C	uc002jgk.2	+	5	610	c.478G>C	c.(478-480)GAT>CAT	p.D160H	KPNA2_uc002jgl.2_Missense_Mutation_p.D160H	NM_002266	NP_002257	P52292	IMA2_HUMAN	karyopherin alpha 2	160	NLS binding site (major) (By similarity).|ARM 3.				DNA metabolic process|G2 phase of mitotic cell cycle|interspecies interaction between organisms|M phase specific microtubule process|NLS-bearing substrate import into nucleus|regulation of DNA recombination	cytoplasm|nuclear pore|nucleoplasm	histone deacetylase binding|nuclear localization sequence binding|protein transporter activity			central_nervous_system(2)	2	all_cancers(12;1.18e-09)		BRCA - Breast invasive adenocarcinoma(8;1.03e-07)|LUSC - Lung squamous cell carcinoma(166;0.24)			GGCTGTGGTAGATGGAGGTGC	0.483000													111	343					0	0	1	0	0
KPNA2	3838	broad.mit.edu	37	17	66040016	66040016	+	Silent	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr17:66040016G>A	uc002jgk.2	+	8	1125	c.993G>A	c.(991-993)GTG>GTA	p.V331V	KPNA2_uc002jgl.2_Silent_p.V331V	NM_002266	NP_002257	P52292	IMA2_HUMAN	karyopherin alpha 2	331	ARM 7.|NLS binding site (minor) (By similarity).				DNA metabolic process|G2 phase of mitotic cell cycle|interspecies interaction between organisms|M phase specific microtubule process|NLS-bearing substrate import into nucleus|regulation of DNA recombination	cytoplasm|nuclear pore|nucleoplasm	histone deacetylase binding|nuclear localization sequence binding|protein transporter activity			central_nervous_system(2)	2	all_cancers(12;1.18e-09)		BRCA - Breast invasive adenocarcinoma(8;1.03e-07)|LUSC - Lung squamous cell carcinoma(166;0.24)			CTCAGGTTGTGATTGATGCAG	0.443000													50	194					0	0	1	0	0
FAM20A	54757	broad.mit.edu	37	17	66538872	66538872	+	Silent	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr17:66538872C>T	uc002jho.2	-	6	1179	c.891G>A	c.(889-891)AAG>AAA	p.K297K	FAM20A_uc010wqp.1_Silent_p.K159K|PRKAR1A_uc002jhm.2_Intron|FAM20A_uc002jhn.2_5'UTR	NM_017565	NP_060035	Q96MK3	FA20A_HUMAN	family with sequence similarity 20, member A	297						extracellular region					0	Breast(10;1.64e-13)					GGATTTCATTCTTGGTGACCT	0.512000													31	105					0	0	1	0	0
ABCA10	10349	broad.mit.edu	37	17	67212121	67212121	+	Missense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr17:67212121C>G	uc010dfa.1	-	9	1572	c.693G>C	c.(691-693)ATG>ATC	p.M231I	ABCA10_uc010wqt.1_RNA|ABCA10_uc010dfb.1_5'Flank|ABCA10_uc010dfc.1_Missense_Mutation_p.M123I	NM_080282	NP_525021	Q8WWZ4	ABCAA_HUMAN	ATP-binding cassette, sub-family A, member 10	231					transport	integral to membrane	ATP binding|ATPase activity			ovary(2)|central_nervous_system(1)|skin(1)	4	Breast(10;6.95e-12)					TTAAAACACTCATGAGGAAAG	0.373000													19	72					0	0	1	0	0
SDK2	54549	broad.mit.edu	37	17	71431603	71431603	+	Missense_Mutation	SNP	T	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr17:71431603T>G	uc010dfm.2	-	9	1181	c.1181A>C	c.(1180-1182)TAC>TCC	p.Y394S	SDK2_uc010dfn.2_Missense_Mutation_p.Y73S	NM_001144952	NP_001138424	Q58EX2	SDK2_HUMAN	sidekick 2	394	Extracellular (Potential).|Ig-like C2-type 4.				cell adhesion	integral to membrane				ovary(2)	2						GACAGCCAGGTAGGTGGAAGT	0.622000													3	16					0	0	1	0	0
OTOP2	92736	broad.mit.edu	37	17	72921682	72921682	+	Silent	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr17:72921682C>T	uc010wrp.1	+	4	434	c.345C>T	c.(343-345)CTC>CTT	p.L115L	USH1G_uc002jme.1_5'Flank|USH1G_uc010wro.1_5'Flank|OTOP2_uc002jmf.1_Silent_p.L115L	NM_178160	NP_835454	Q7RTS6	OTOP2_HUMAN	otopetrin 2	115	Helical; (Potential).					integral to membrane				ovary(3)|large_intestine(1)	4	all_lung(278;0.172)|Lung NSC(278;0.207)					TCTGCACCCTCATCATGGATG	0.557000													33	127					0	0	1	0	0
LLGL2	3993	broad.mit.edu	37	17	73552126	73552126	+	Splice_Site	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr17:73552126G>A	uc002joh.2	+	3	230	c.76_splice	c.e3-1	p.T26_splice	LLGL2_uc002jog.1_Splice_Site_p.T26_splice|LLGL2_uc010dgf.1_Splice_Site_p.T26_splice|LLGL2_uc002joi.2_Splice_Site_p.T26_splice|LLGL2_uc010dgg.1_Splice_Site_p.T26_splice|LLGL2_uc002joj.2_5'Flank	NM_001031803	NP_001026973	Q6P1M3	L2GL2_HUMAN	lethal giant larvae homolog 2 isoform c						cell cycle|cell division|exocytosis|regulation of establishment or maintenance of cell polarity	cytoplasm|intracellular membrane-bounded organelle	PDZ domain binding			ovary(2)	2	all_cancers(13;3.15e-09)|all_epithelial(9;5.78e-10)|Breast(9;5.8e-10)|all_lung(278;0.246)		all cancers(21;1.8e-07)|Epithelial(20;1.38e-06)|Lung(188;0.0696)|LUSC - Lung squamous cell carcinoma(166;0.112)			TCTCGTTGCAGACGGTGGAGC	0.677000													22	63					0	0	1	0	0
RECQL5	9400	broad.mit.edu	37	17	73658887	73658887	+	Missense_Mutation	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr17:73658887C>T	uc010dgl.2	-	4	599	c.443G>A	c.(442-444)CGC>CAC	p.R148H	RECQL5_uc010dgk.2_Missense_Mutation_p.R121H|RECQL5_uc002jpb.1_Missense_Mutation_p.R148H|RECQL5_uc002joz.3_Missense_Mutation_p.R148H|RECQL5_uc002jpa.3_Missense_Mutation_p.R148H	NM_004259	NP_004250	O94762	RECQ5_HUMAN	RecQ protein-like 5 isoform 1	148	Helicase ATP-binding.				DNA recombination|DNA repair	cytoplasm|nuclear membrane|nucleolus|nucleoplasm	ATP binding|ATP-dependent helicase activity|DNA helicase activity|nucleic acid binding			kidney(3)	3	all_cancers(13;2.73e-08)|Breast(9;6.04e-09)|all_epithelial(9;6.79e-09)		all cancers(21;1.15e-06)|Epithelial(20;2.19e-06)|Lung(188;0.101)|LUSC - Lung squamous cell carcinoma(166;0.112)			CAGCAGGTGGCGGGACACCAG	0.572000								Other_identified_genes_with_known_or_suspected_DNA_repair_function					6	297					0	0	1	0	0
ITGB4	3691	broad.mit.edu	37	17	73738843	73738843	+	Splice_Site	SNP	G	C	C	rs113310826		TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr17:73738843G>C	uc002jpg.2	+	25	3149	c.2962_splice	c.e25+1	p.A988_splice	ITGB4_uc002jph.2_Splice_Site_p.A988_splice|ITGB4_uc002jpi.3_Splice_Site_p.A988_splice|ITGB4_uc002jpj.2_Splice_Site_p.A988_splice	NM_000213	NP_000204	P16144	ITB4_HUMAN	integrin beta 4 isoform 1 precursor						cell communication|cell motility|cell-matrix adhesion|hemidesmosome assembly|integrin-mediated signaling pathway|multicellular organismal development|response to wounding	cell leading edge|cell surface|hemidesmosome|integrin complex	protein binding|receptor activity			lung(4)	4	all_cancers(13;1.5e-07)		all cancers(21;8.32e-07)|Epithelial(20;1.92e-06)|BRCA - Breast invasive adenocarcinoma(9;0.00194)|Lung(188;0.132)|LUSC - Lung squamous cell carcinoma(166;0.154)			AAGGAGCAAGGTGGGTCTGGG	0.378000													12	31					0	0	1	0	0
UNK	85451	broad.mit.edu	37	17	73813417	73813417	+	Missense_Mutation	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr17:73813417G>A	uc002jpm.2	+	10	1343	c.1343G>A	c.(1342-1344)AGA>AAA	p.R448K		NM_001080419	NP_001073888	Q9C0B0	UNK_HUMAN	zinc finger CCCH-type domain containing 5	372							nucleic acid binding|zinc ion binding				0			all cancers(21;2.61e-06)|Epithelial(20;7.39e-06)|BRCA - Breast invasive adenocarcinoma(9;0.00194)|LUSC - Lung squamous cell carcinoma(166;0.154)			CTCCTCTGTAGAAACAGCAGC	0.657000													26	78					0	0	1	0	0
UNK	85451	broad.mit.edu	37	17	73818677	73818677	+	Missense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr17:73818677G>C	uc002jpm.2	+	15	2185	c.2185G>C	c.(2185-2187)GAG>CAG	p.E729Q		NM_001080419	NP_001073888	Q9C0B0	UNK_HUMAN	zinc finger CCCH-type domain containing 5	653	Potential.						nucleic acid binding|zinc ion binding				0			all cancers(21;2.61e-06)|Epithelial(20;7.39e-06)|BRCA - Breast invasive adenocarcinoma(9;0.00194)|LUSC - Lung squamous cell carcinoma(166;0.154)			ACTTCGGCAAGAGCTGGATGA	0.642000													21	57					0	0	1	0	0
UNK	85451	broad.mit.edu	37	17	73820444	73820444	+	Missense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr17:73820444G>C	uc002jpm.2	+	17	2607	c.2607G>C	c.(2605-2607)GAG>GAC	p.E869D		NM_001080419	NP_001073888	Q9C0B0	UNK_HUMAN	zinc finger CCCH-type domain containing 5	793	RING-type; degenerate.						nucleic acid binding|zinc ion binding				0			all cancers(21;2.61e-06)|Epithelial(20;7.39e-06)|BRCA - Breast invasive adenocarcinoma(9;0.00194)|LUSC - Lung squamous cell carcinoma(166;0.154)			TCTGCGCTGAGGGCAGCGAGT	0.647000													3	6					0	0	1	0	0
CDK3	1018	broad.mit.edu	37	17	74001454	74001454	+	Missense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr17:74001454G>C	uc010dgt.2	+	8	944	c.868G>C	c.(868-870)GAG>CAG	p.E290Q	CDK3_uc002jqg.3_Missense_Mutation_p.E318Q	NM_001258	NP_001249	Q00526	CDK3_HUMAN	cyclin-dependent kinase 3	290					cell division|cell proliferation|mitosis		ATP binding|cyclin-dependent protein kinase activity			central_nervous_system(1)	1						CTCATCCCCTGAGCCCTCCCC	0.587000													15	71					0	0	1	0	0
GALR2	8811	broad.mit.edu	37	17	74072990	74072990	+	Silent	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr17:74072990C>G	uc002jqm.1	+	2	723	c.642C>G	c.(640-642)CTC>CTG	p.L214L	ZACN_uc002jqn.2_5'Flank|ZACN_uc002jqo.2_5'Flank|ZACN_uc010dgu.2_5'Flank	NM_003857	NP_003848	O43603	GALR2_HUMAN	galanin receptor 2	214	Cytoplasmic (Potential).				digestion|elevation of cytosolic calcium ion concentration|feeding behavior|learning or memory|muscle contraction	integral to membrane|plasma membrane	galanin receptor activity				0						TGCGCTACCTCTGGCGCGCCG	0.692000													7	29					0	0	1	0	0
RNF157	114804	broad.mit.edu	37	17	74158697	74158697	+	Missense_Mutation	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr17:74158697C>T	uc002jqz.2	-	9	797	c.728G>A	c.(727-729)GGG>GAG	p.G243E	RNF157_uc002jra.2_Missense_Mutation_p.G243E	NM_052916	NP_443148	Q96PX1	RN157_HUMAN	ring finger protein 157	243							zinc ion binding			ovary(1)	1			LUSC - Lung squamous cell carcinoma(166;0.187)			GTAGCTGACCCCGTCTACCTG	0.428000													10	44					0	0	1	0	0
QRICH2	84074	broad.mit.edu	37	17	74276386	74276386	+	Silent	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr17:74276386G>A	uc002jrd.1	-	11	4290	c.4110C>T	c.(4108-4110)CTC>CTT	p.L1370L	QRICH2_uc010wsz.1_Silent_p.L1296L|QRICH2_uc010dgw.1_Silent_p.L214L	NM_032134	NP_115510	Q9H0J4	QRIC2_HUMAN	glutamine rich 2	1370							protein binding			ovary(1)|pancreas(1)|lung(1)|central_nervous_system(1)|skin(1)	5						CCATCTCTGTGAGCAGCCTGT	0.622000													27	115					0	0	1	0	0
ST6GALNAC2	10610	broad.mit.edu	37	17	74570585	74570585	+	Nonsense_Mutation	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr17:74570585G>A	uc002jsg.3	-	3	478	c.223C>T	c.(223-225)CAG>TAG	p.Q75*		NM_006456	NP_006447	Q9UJ37	SIA7B_HUMAN	sialyltransferase 7B	75	Lumenal (Potential).				protein glycosylation	integral to Golgi membrane	sialyltransferase activity				0						GGGTGCCGCTGAATGGCCAGG	0.662000													12	22					0	0	1	0	0
ST6GALNAC1	55808	broad.mit.edu	37	17	74625172	74625172	+	Silent	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr17:74625172C>T	uc002jsh.2	-	2	927	c.753G>A	c.(751-753)CTG>CTA	p.L251L	ST6GALNAC1_uc002jsi.2_Silent_p.L119L|ST6GALNAC1_uc002jsj.2_RNA	NM_018414	NP_060884	Q9NSC7	SIA7A_HUMAN	sialyltransferase 7A	251	Lumenal (Potential).				protein glycosylation	integral to Golgi membrane	alpha-N-acetylgalactosaminide alpha-2,6-sialyltransferase activity				0						TGGCGGCCTTCAGTCTTTGGT	0.547000													33	102					0	0	1	0	0
SEPT9	10801	broad.mit.edu	37	17	75303264	75303264	+	Missense_Mutation	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr17:75303264G>A	uc002jts.3	+	2	187	c.61G>A	c.(61-63)GAC>AAC	p.D21N	SEPT9_uc010wtk.1_Intron|SEPT9_uc002jtt.3_5'UTR	NM_001113491	NP_001106963	Q9UHD8	SEPT9_HUMAN	septin 9 isoform a	21					cell cycle|cell division|protein heterooligomerization	microtubule|perinuclear region of cytoplasm|stress fiber	GTP binding|GTPase activity|protein binding|protein binding			breast(2)|ovary(1)	3			BRCA - Breast invasive adenocarcinoma(99;0.153)			GAGGCTTGGTGACTCCAGTGG	0.642000													4	132					0	0	1	0	0
PGS1	9489	broad.mit.edu	37	17	76394392	76394392	+	Silent	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr17:76394392C>G	uc002jvm.2	+	4	483	c.471C>G	c.(469-471)CTC>CTG	p.L157L	PGS1_uc010wtt.1_RNA|PGS1_uc010dho.2_5'Flank|PGS1_uc002jvn.2_5'Flank|PGS1_uc002jvo.2_5'Flank|PGS1_uc002jvp.1_5'Flank	NM_024419	NP_077733	Q32NB8	PGPS1_HUMAN	phosphatidylglycerophosphate synthase 1	157					phospholipid biosynthetic process	endoplasmic reticulum|mitochondrion	ATP binding|CDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase activity				0			BRCA - Breast invasive adenocarcinoma(99;0.00144)|OV - Ovarian serous cystadenocarcinoma(97;0.031)			CTTCAAATCTCAAGGTCTCCA	0.493000													36	171					0	0	1	0	0
PGS1	9489	broad.mit.edu	37	17	76394407	76394407	+	Silent	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr17:76394407C>G	uc002jvm.2	+	4	498	c.486C>G	c.(484-486)CTC>CTG	p.L162L	PGS1_uc010wtt.1_RNA|PGS1_uc010dho.2_5'Flank|PGS1_uc002jvn.2_5'Flank|PGS1_uc002jvo.2_5'Flank|PGS1_uc002jvp.1_5'Flank	NM_024419	NP_077733	Q32NB8	PGPS1_HUMAN	phosphatidylglycerophosphate synthase 1	162					phospholipid biosynthetic process	endoplasmic reticulum|mitochondrion	ATP binding|CDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase activity				0			BRCA - Breast invasive adenocarcinoma(99;0.00144)|OV - Ovarian serous cystadenocarcinoma(97;0.031)			TCTCCATTCTCTTAGACTTCA	0.507000													25	154					0	0	1	0	0
DNAH17	8632	broad.mit.edu	37	17	76435191	76435191	+	Missense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr17:76435191C>G	uc010dhp.1	-	18	3008	c.2786G>C	c.(2785-2787)GGA>GCA	p.G929A	DNAH17_uc002jvq.2_Missense_Mutation_p.G214A|DNAH17_uc002jvs.2_RNA					SubName: Full=DNAH17 variant protein; Flags: Fragment;											ovary(6)|breast(2)|skin(1)	9			BRCA - Breast invasive adenocarcinoma(99;0.00294)|OV - Ovarian serous cystadenocarcinoma(97;0.0656)			GACCCAGTGTCCTTTCTCTGC	0.597000													6	34					0	0	1	0	0
Unknown	0	broad.mit.edu	37	17	76496644	76496644	+	RNA	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr17:76496644G>A	uc002jvt.1	+	2		c.2103G>A								Homo sapiens cDNA FLJ45552 fis, clone BRTHA2038279.																		aggctggagtgcagtggtaca	0.169000													3	5					0	0	1	0	0
USP36	57602	broad.mit.edu	37	17	76794610	76794610	+	Missense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr17:76794610C>G	uc002jvz.1	-	20	3589	c.3264G>C	c.(3262-3264)AAG>AAC	p.K1088N	USP36_uc002jwa.1_Missense_Mutation_p.K1088N|USP36_uc002jvy.1_Missense_Mutation_p.K148N	NM_025090	NP_079366	Q9P275	UBP36_HUMAN	ubiquitin specific peptidase 36	1086					ubiquitin-dependent protein catabolic process	nucleolus	cysteine-type peptidase activity|ubiquitin thiolesterase activity			lung(2)|ovary(1)|breast(1)|kidney(1)	5			BRCA - Breast invasive adenocarcinoma(99;0.000842)|OV - Ovarian serous cystadenocarcinoma(97;0.151)			TCTTCTCTCTCTTAAATTTTT	0.488000													39	135					0	0	1	0	0
CANT1	124583	broad.mit.edu	37	17	76993303	76993303	+	Silent	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr17:76993303C>G	uc002jwn.2	-	4	841	c.402G>C	c.(400-402)CTG>CTC	p.L134L	CANT1_uc002jwk.2_Silent_p.L134L|CANT1_uc002jwj.2_Silent_p.L134L|CANT1_uc002jwl.2_RNA|CANT1_uc002jwm.1_5'Flank	NM_001159772	NP_001153244	Q8WVQ1	CANT1_HUMAN	calcium activated nucleotidase 1	134	Lumenal (Potential).				positive regulation of I-kappaB kinase/NF-kappaB cascade	endoplasmic reticulum membrane|Golgi cisterna membrane|integral to membrane	calcium ion binding|nucleoside-diphosphatase activity|signal transducer activity				0			BRCA - Breast invasive adenocarcinoma(99;0.0362)|OV - Ovarian serous cystadenocarcinoma(97;0.139)			CTGACAGGGTCAGGTAGCCCT	0.562000			T	ETV4	prostate								7	436					0	0	1	0	0
CARD14	79092	broad.mit.edu	37	17	78180858	78180858	+	Silent	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr17:78180858C>T	uc002jxw.1	+	20	2976	c.2781C>T	c.(2779-2781)GTC>GTT	p.V927V	CARD14_uc002jxt.1_RNA	NM_024110	NP_077015	Q9BXL6	CAR14_HUMAN	caspase recruitment domain protein 14 isoform 1	927	Guanylate kinase-like.				activation of NF-kappaB-inducing kinase activity|positive regulation of protein phosphorylation|regulation of apoptosis	aggresome|cytoplasm|plasma membrane	CARD domain binding			ovary(4)|skin(1)	5	all_neural(118;0.0952)		OV - Ovarian serous cystadenocarcinoma(97;0.017)|BRCA - Breast invasive adenocarcinoma(99;0.0908)			ACGTCTCTGTCAACGAGAAGA	0.617000													11	51					0	0	1	0	0
Unknown	0	broad.mit.edu	37	17	78272244	78272244	+	Nonsense_Mutation	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr17:78272244G>A	uc002jyf.2	+	11	2279	c.2136G>A	c.(2134-2136)TGG>TGA	p.W712*	uc002jyg.1_Nonsense_Mutation_p.W443*	NM_020954	NP_066005			hypothetical protein LOC57714																		AGGATGCCTGGAGACAGCCTG	0.582000													4	82					0	0	1	0	0
RNF213	57674	broad.mit.edu	37	17	78328272	78328272	+	Silent	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr17:78328272C>T	uc002jyh.1	+	11	5200	c.4977C>T	c.(4975-4977)CTC>CTT	p.L1659L	uc002jyi.1_RNA|RNF213_uc010dhw.1_Silent_p.L41L	NM_020914	NP_065965	Q9HCF4	ALO17_HUMAN	ring finger protein 213	Error:Variant_position_missing_in_Q9HCF4_after_alignment										ovary(8)|lung(6)|breast(3)|large_intestine(2)|central_nervous_system(1)|pancreas(1)	21	all_neural(118;0.0538)		BRCA - Breast invasive adenocarcinoma(99;0.0252)|OV - Ovarian serous cystadenocarcinoma(97;0.057)			AGATGCGCCTCAGTGTCTTTT	0.552000													14	77					0	0	1	0	0
ZNF750	79755	broad.mit.edu	37	17	80789969	80789969	+	Missense_Mutation	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr17:80789969C>T	uc002kga.2	-	2	673	c.362G>A	c.(361-363)GGA>GAA	p.G121E	TBCD_uc002kfx.1_Intron|TBCD_uc002kfy.1_Intron|TBCD_uc002kfz.2_Intron	NM_024702	NP_078978	Q32MQ0	ZN750_HUMAN	zinc finger protein 750	121						intracellular	zinc ion binding			central_nervous_system(1)	1	Breast(20;0.000523)|all_neural(118;0.0779)	all_cancers(8;0.0514)|all_epithelial(8;0.0748)	OV - Ovarian serous cystadenocarcinoma(97;0.0868)|BRCA - Breast invasive adenocarcinoma(99;0.149)			CCTGTGGGTTCCCCGGGCTTG	0.617000													19	61					0	0	1	0	0
THOC1	9984	broad.mit.edu	37	18	246446	246446	+	Missense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr18:246446C>G	uc002kkj.3	-	11	836	c.796G>C	c.(796-798)GAA>CAA	p.E266Q	THOC1_uc002kkk.3_RNA|THOC1_uc002kkl.2_Missense_Mutation_p.E266Q	NM_005131	NP_005122	Q96FV9	THOC1_HUMAN	THO complex 1	266					apoptosis|intronless viral mRNA export from host nucleus|mRNA processing|regulation of transcription elongation, DNA-dependent|RNA splicing|signal transduction|transcription, DNA-dependent	cytoplasm|nuclear matrix|nuclear speck|THO complex part of transcription export complex	DNA binding|protein binding|RNA binding			ovary(1)	1		all_cancers(4;0.0896)|Myeloproliferative disorder(11;0.0412)				GCTAAAACTTCTTCAGAATAC	0.308000													10	34					0	0	1	0	0
COLEC12	81035	broad.mit.edu	37	18	346790	346790	+	Missense_Mutation	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr18:346790C>T	uc002kkm.2	-	5	1047	c.832G>A	c.(832-834)GCC>ACC	p.A278T		NM_130386	NP_569057	Q5KU26	COL12_HUMAN	collectin sub-family member 12	278	Potential.|Extracellular (Potential).				carbohydrate mediated signaling|innate immune response|phagocytosis, recognition|protein homooligomerization	collagen|integral to membrane	galactose binding|low-density lipoprotein particle binding|metal ion binding|pattern recognition receptor activity|scavenger receptor activity			ovary(1)|pancreas(1)	2		all_cancers(4;0.0442)|Myeloproliferative disorder(11;0.0426)				TCGTTGTTGGCTTTGGCCAAC	0.517000													4	90					0	0	1	0	0
COLEC12	81035	broad.mit.edu	37	18	346882	346882	+	Missense_Mutation	SNP	A	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr18:346882A>G	uc002kkm.2	-	5	955	c.740T>C	c.(739-741)GTT>GCT	p.V247A		NM_130386	NP_569057	Q5KU26	COL12_HUMAN	collectin sub-family member 12	247	Potential.|Extracellular (Potential).				carbohydrate mediated signaling|innate immune response|phagocytosis, recognition|protein homooligomerization	collagen|integral to membrane	galactose binding|low-density lipoprotein particle binding|metal ion binding|pattern recognition receptor activity|scavenger receptor activity			ovary(1)|pancreas(1)	2		all_cancers(4;0.0442)|Myeloproliferative disorder(11;0.0426)				TTGAAGAAAAACCTGCTGCAG	0.517000													22	86					0	0	1	0	0
TGIF1	7050	broad.mit.edu	37	18	3456381	3456381	+	Missense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr18:3456381G>C	uc002klz.2	+	2	820	c.433G>C	c.(433-435)GAG>CAG	p.E145Q	TGIF1_uc002klu.2_5'UTR|TGIF1_uc002klv.2_Missense_Mutation_p.E30Q|TGIF1_uc002klx.2_5'UTR|TGIF1_uc002klw.2_Missense_Mutation_p.E16Q|TGIF1_uc010dkm.1_Missense_Mutation_p.E16Q|TGIF1_uc002kly.2_Missense_Mutation_p.E16Q|TGIF1_uc002kma.2_5'UTR|TGIF1_uc002kmb.2_5'UTR|TGIF1_uc002kmc.2_5'UTR	NM_170695	NP_733796	Q15583	TGIF1_HUMAN	TG-interacting factor isoform a	145					negative regulation of transcription from RNA polymerase II promoter	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription corepressor activity			ovary(1)	1	Esophageal squamous(4;0.0859)	Colorectal(8;0.0104)				CAGTGAGACTGAGGATGAGGA	0.502000													100	561					0	0	1	0	0
LAMA1	284217	broad.mit.edu	37	18	7009317	7009317	+	Missense_Mutation	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr18:7009317C>T	uc002knm.2	-	27	4016	c.3922G>A	c.(3922-3924)GAG>AAG	p.E1308K	LAMA1_uc010wzj.1_Missense_Mutation_p.E784K	NM_005559	NP_005550	P25391	LAMA1_HUMAN	laminin, alpha 1 precursor	1308	Laminin IV type A 2.				axon guidance|cell adhesion|cell surface receptor linked signaling pathway|regulation of cell adhesion|regulation of cell migration|regulation of embryonic development	extracellular space|laminin-1 complex|laminin-3 complex	extracellular matrix structural constituent|receptor binding			ovary(8)|large_intestine(4)|upper_aerodigestive_tract(2)|breast(2)|skin(2)|pancreas(2)|central_nervous_system(1)	21		Colorectal(10;0.172)			Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)	ATAAAATCCTCTCGCGTGACA	0.398000													30	116					0	0	1	0	0
PTPRM	5797	broad.mit.edu	37	18	8394576	8394576	+	Silent	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr18:8394576G>A	uc002knn.3	+	30	4775	c.4272G>A	c.(4270-4272)CTG>CTA	p.L1424L	PTPRM_uc010dkv.2_Silent_p.L1437L|PTPRM_uc010wzl.1_Silent_p.L1211L	NM_002845	NP_002836	P28827	PTPRM_HUMAN	protein tyrosine phosphatase, receptor type, M	1424	Tyrosine-protein phosphatase 2.|Cytoplasmic (Potential).				homophilic cell adhesion|negative regulation of angiogenesis|negative regulation of endothelial cell migration|negative regulation of endothelial cell proliferation|response to drug|retina layer formation|retinal ganglion cell axon guidance	cell-cell adherens junction|integral to plasma membrane|lamellipodium|perinuclear region of cytoplasm	cadherin binding|transmembrane receptor protein tyrosine phosphatase activity			lung(3)|ovary(2)|central_nervous_system(1)	6		Colorectal(10;0.234)				TGAAGACACTGAGGAACAACA	0.512000													12	55					0	0	1	0	0
TXNDC2	84203	broad.mit.edu	37	18	9887386	9887386	+	Missense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr18:9887386G>C	uc002koi.3	+	2	1359	c.910G>C	c.(910-912)GAG>CAG	p.E304Q	TXNDC2_uc010wzq.1_Intron|TXNDC2_uc002koh.3_Missense_Mutation_p.E237Q	NM_001098529	NP_001091999	Q86VQ3	TXND2_HUMAN	thioredoxin domain-containing 2 isoform 2	304	13.|22 X 15 AA approximate tandem repeat of Q-P-K-X-G-D-I-P-K-S-[PS]-E-[KE]-X-I.				cell differentiation|cell redox homeostasis|glycerol ether metabolic process|multicellular organismal development|spermatogenesis	cytoplasm	electron carrier activity|nutrient reservoir activity|protein disulfide oxidoreductase activity|thioredoxin-disulfide reductase activity			ovary(1)|pancreas(1)	2						CAAGTCCCTAGAGGAAGCCAT	0.602000													3	199					0	0	1	0	0
CEP192	55125	broad.mit.edu	37	18	13092445	13092445	+	Missense_Mutation	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr18:13092445C>T	uc010xac.1	+	34	6253	c.6173C>T	c.(6172-6174)TCA>TTA	p.S2058L	CEP192_uc010dlf.1_RNA|CEP192_uc010xad.1_Missense_Mutation_p.S1583L|CEP192_uc002kru.2_RNA|CEP192_uc002krv.2_Missense_Mutation_p.S480L|CEP192_uc002krw.2_Missense_Mutation_p.S207L|CEP192_uc002krx.2_Missense_Mutation_p.S62L|CEP192_uc002kry.2_RNA	NM_032142	NP_115518	E9PF99	E9PF99_HUMAN	centrosomal protein 192kDa	2058										ovary(4)|pancreas(1)	5						ATTATACTTTCAGTAATTGGA	0.333000													4	81					0	0	1	0	0
RNMT	8731	broad.mit.edu	37	18	13731616	13731616	+	Missense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr18:13731616G>C	uc002ksk.1	+	2	167	c.100G>C	c.(100-102)GAA>CAA	p.E34Q	RNMT_uc002ksl.1_Missense_Mutation_p.E34Q|RNMT_uc002ksm.1_Missense_Mutation_p.E34Q|RNMT_uc010dlk.2_Missense_Mutation_p.E34Q|RNMT_uc010xae.1_Intron	NM_003799	NP_003790	O43148	MCES_HUMAN	RNA (guanine-7-) methyltransferase	34					mRNA capping|transcription from RNA polymerase II promoter|viral reproduction	nucleoplasm	mRNA (guanine-N7-)-methyltransferase activity|RNA binding				0						CAATATTAATGAAAACACAAC	0.373000													32	162					0	0	1	0	0
MC5R	4161	broad.mit.edu	37	18	13825853	13825853	+	Missense_Mutation	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr18:13825853C>T	uc010xaf.1	+	1	89	c.89C>T	c.(88-90)TCT>TTT	p.S30F		NM_005913	NP_005904	P33032	MC5R_HUMAN	melanocortin 5 receptor	30	Extracellular (Potential).				G-protein signaling, coupled to cyclic nucleotide second messenger|positive regulation of cAMP biosynthetic process	integral to plasma membrane	melanocortin receptor activity|protein binding			ovary(3)|lung(2)|breast(1)	6						AAAAACAAGTCTTCACCATGT	0.468000													19	78					0	0	1	0	0
POTEC	388468	broad.mit.edu	37	18	14534913	14534913	+	Missense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr18:14534913C>G	uc010dln.2	-	4	1358	c.904G>C	c.(904-906)GAT>CAT	p.D302H	POTEC_uc010xaj.1_RNA	NM_001137671	NP_001131143	B2RU33	POTEC_HUMAN	ANKRD26-like family B, member 2	302										skin(3)	3						CCATATCTATCAAGTGCATTT	0.299000													10	81					0	0	1	0	0
CTAGE1	64693	broad.mit.edu	37	18	19997772	19997772	+	Missense_Mutation	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr18:19997772C>T	uc002ktv.1	-	1	107	c.3G>A	c.(1-3)ATG>ATA	p.M1I		NM_172241	NP_758441	Q96RT6	CTGE2_HUMAN	cutaneous T-cell lymphoma-associated antigen 1	1						integral to membrane				ovary(1)	1	all_cancers(21;0.000361)|all_epithelial(16;9.61e-06)|Colorectal(14;0.0533)|Lung NSC(20;0.0605)|Ovarian(2;0.116)|all_lung(20;0.135)					AATCGGGTCTCATACCTTCAG	0.517000													10	17					0	0	1	0	0
NPC1	4864	broad.mit.edu	37	18	21134844	21134844	+	Silent	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr18:21134844C>T	uc002kum.3	-	9	1705	c.1431G>A	c.(1429-1431)ACG>ACA	p.T477T	NPC1_uc010xaz.1_Silent_p.T278T|NPC1_uc010xba.1_Silent_p.T322T	NM_000271	NP_000262	O15118	NPC1_HUMAN	Niemann-Pick disease, type C1 precursor	477					autophagy|bile acid metabolic process|cholesterol efflux|cholesterol homeostasis|lysosomal transport	endoplasmic reticulum|integral to plasma membrane|late endosome membrane|lysosomal membrane|nuclear envelope|perinuclear region of cytoplasm	hedgehog receptor activity|protein binding|sterol transporter activity			ovary(2)	2	all_cancers(21;0.000106)|all_epithelial(16;6.57e-07)|Lung NSC(20;0.00166)|all_lung(20;0.00536)|Colorectal(14;0.0202)|Ovarian(20;0.127)					TGGTGCAGTTCGTGTTATACG	0.438000													15	73					0	0	1	0	0
CDH2	1000	broad.mit.edu	37	18	25583081	25583081	+	Silent	SNP	G	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr18:25583081G>T	uc002kwg.2	-	7	1359	c.900C>A	c.(898-900)CTC>CTA	p.L300L	CDH2_uc010xbn.1_Silent_p.L269L	NM_001792	NP_001783	P19022	CADH2_HUMAN	cadherin 2, type 1 preproprotein	300	Extracellular (Potential).|Cadherin 2.				adherens junction organization|cell junction assembly|positive regulation of muscle cell differentiation	catenin complex|integral to membrane	alpha-catenin binding|beta-catenin binding|calcium ion binding|gamma-catenin binding			ovary(3)|lung(1)	4						ACATCCCATTGAGGGCATTGG	0.463000													24	79					3.5997e-14	3.7426e-14	1	1	0
DSG4	147409	broad.mit.edu	37	18	28993427	28993427	+	Missense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr18:28993427G>C	uc002kwq.2	+	16	3127	c.2992G>C	c.(2992-2994)GGG>CGG	p.G998R	DSG4_uc002kwr.2_Missense_Mutation_p.G1017R	NM_177986	NP_817123	Q86SJ6	DSG4_HUMAN	desmoglein 4 isoform 2 preproprotein	998	Cytoplasmic (Potential).				homophilic cell adhesion	desmosome|integral to membrane	calcium ion binding			central_nervous_system(5)|ovary(3)	8			OV - Ovarian serous cystadenocarcinoma(10;0.00504)			TATTTTAGTAGGGCCAGAAAT	0.502000													40	114					0	0	1	0	0
DSG3	1830	broad.mit.edu	37	18	29046629	29046629	+	Silent	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr18:29046629G>A	uc002kws.2	+	11	1657	c.1548G>A	c.(1546-1548)CTG>CTA	p.L516L		NM_001944	NP_001935	P32926	DSG3_HUMAN	desmoglein 3 preproprotein	516	Extracellular (Potential).				cellular component disassembly involved in apoptosis|homophilic cell adhesion	cytosol|desmosome|integral to membrane	calcium ion binding			skin(4)|ovary(3)|lung(1)|central_nervous_system(1)	9			OV - Ovarian serous cystadenocarcinoma(10;0.00504)			CTAGAACACTGAATAATAGAT	0.443000													38	138					0	0	1	0	0
DSG3	1830	broad.mit.edu	37	18	29049131	29049131	+	Missense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr18:29049131G>C	uc002kws.2	+	12	1825	c.1716G>C	c.(1714-1716)CAG>CAC	p.Q572H		NM_001944	NP_001935	P32926	DSG3_HUMAN	desmoglein 3 preproprotein	572	Extracellular (Potential).				cellular component disassembly involved in apoptosis|homophilic cell adhesion	cytosol|desmosome|integral to membrane	calcium ion binding			skin(4)|ovary(3)|lung(1)|central_nervous_system(1)	9			OV - Ovarian serous cystadenocarcinoma(10;0.00504)			CAGACAGTCAGAACAATCGGT	0.522000													54	174					0	0	1	0	0
DSG3	1830	broad.mit.edu	37	18	29054363	29054363	+	Missense_Mutation	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr18:29054363C>T	uc002kws.2	+	15	2490	c.2381C>T	c.(2380-2382)TCT>TTT	p.S794F	DSG3_uc002kwt.2_Missense_Mutation_p.S76F	NM_001944	NP_001935	P32926	DSG3_HUMAN	desmoglein 3 preproprotein	794	Cytoplasmic (Potential).				cellular component disassembly involved in apoptosis|homophilic cell adhesion	cytosol|desmosome|integral to membrane	calcium ion binding			skin(4)|ovary(3)|lung(1)|central_nervous_system(1)	9			OV - Ovarian serous cystadenocarcinoma(10;0.00504)			TCCTACTTTTCTCAGGTAATT	0.368000													30	130					0	0	1	0	0
TTR	7276	broad.mit.edu	37	18	29171890	29171890	+	Missense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr18:29171890C>G	uc002kwx.3	+	1	161	c.25C>G	c.(25-27)CTC>GTC	p.L9V		NM_000371	NP_000362	P02766	TTHY_HUMAN	transthyretin precursor	9					transport	cytoplasm	hormone activity			ovary(1)	1			OV - Ovarian serous cystadenocarcinoma(10;0.00523)		Diclofenac(DB00586)|Diethylstilbestrol(DB00255)|Diflunisal(DB00861)|Dimethyl sulfoxide(DB01093)|Levothyroxine(DB00451)|Liothyronine(DB00279)	TCTGCTCCTCCTCTGCCTTGC	0.502000													14	68					0	0	1	0	0
KIAA1012	22878	broad.mit.edu	37	18	29437732	29437732	+	Missense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr18:29437732C>G	uc002kxc.3	-	20	3323	c.2959G>C	c.(2959-2961)GAT>CAT	p.D987H	KIAA1012_uc002kxb.3_Missense_Mutation_p.D933H|KIAA1012_uc002kxd.3_Intron	NM_014939	NP_055754	Q9Y2L5	TPPC8_HUMAN	hypothetical protein LOC22878	987					ER to Golgi vesicle-mediated transport	cis-Golgi network					0						GAGGTAGCATCTGTCACAACA	0.458000													63	191					0	0	1	0	0
KIAA1632	57724	broad.mit.edu	37	18	43447670	43447670	+	Missense_Mutation	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr18:43447670G>A	uc002lbm.2	-	37	6369	c.6269C>T	c.(6268-6270)TCT>TTT	p.S2090F	KIAA1632_uc010xcq.1_Missense_Mutation_p.S644F|KIAA1632_uc010xcr.1_RNA|KIAA1632_uc010xcs.1_RNA|KIAA1632_uc002lbn.2_Missense_Mutation_p.S965F	NM_020964	NP_066015	Q9HCE0	EPG5_HUMAN	hypothetical protein LOC57724	2090					autophagy						0						ACAGAGTACAGACCCCAAAAA	0.448000													25	100					0	0	1	0	0
KIAA1632	57724	broad.mit.edu	37	18	43450595	43450595	+	Silent	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr18:43450595C>T	uc002lbm.2	-	36	6262	c.6162G>A	c.(6160-6162)ACG>ACA	p.T2054T	KIAA1632_uc010xcq.1_Silent_p.T608T|KIAA1632_uc010xcr.1_RNA|KIAA1632_uc010xcs.1_Intron|KIAA1632_uc002lbn.2_Silent_p.T929T	NM_020964	NP_066015	Q9HCE0	EPG5_HUMAN	hypothetical protein LOC57724	2054					autophagy						0						GTTTCCGGTACGTGCTATGGA	0.517000													16	58					0	0	1	0	0
KIAA1632	57724	broad.mit.edu	37	18	43467829	43467829	+	Nonsense_Mutation	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr18:43467829G>A	uc002lbm.2	-	29	5096	c.4996C>T	c.(4996-4998)CAG>TAG	p.Q1666*	KIAA1632_uc010xcq.1_Nonsense_Mutation_p.Q220*|KIAA1632_uc010xcr.1_RNA|KIAA1632_uc010xcs.1_RNA|KIAA1632_uc002lbn.2_Nonsense_Mutation_p.Q541*	NM_020964	NP_066015	Q9HCE0	EPG5_HUMAN	hypothetical protein LOC57724	1666					autophagy						0						CCAACTTTCTGAATCCCAGGT	0.448000													33	119					0	0	1	0	0
TCEB3C	162699	broad.mit.edu	37	18	44555158	44555158	+	Silent	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr18:44555158G>C	uc010xdb.1	-	1	1292	c.1056C>G	c.(1054-1056)CTC>CTG	p.L352L	KATNAL2_uc010dnq.1_Intron|KATNAL2_uc002lco.2_Intron|KATNAL2_uc002lcp.3_Intron	NM_145653	NP_663628	Q8NG57	ELOA3_HUMAN	transcription elongation factor B polypeptide	352	Activation domain (By similarity).				regulation of transcription, DNA-dependent|transcription, DNA-dependent	integral to membrane|nucleus	DNA binding				0						CCACGTCGCCGAGGGCGTCCG	0.652000													7	646					0	0	1	0	0
DCC	1630	broad.mit.edu	37	18	50278549	50278549	+	Missense_Mutation	SNP	A	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr18:50278549A>C	uc002lfe.1	+	2	804	c.217A>C	c.(217-219)AAG>CAG	p.K73Q	DCC_uc010xdr.1_5'UTR	NM_005215	NP_005206	P43146	DCC_HUMAN	netrin receptor DCC precursor	73	Extracellular (Potential).|Ig-like C2-type 1.				apoptosis|induction of apoptosis|negative regulation of collateral sprouting|negative regulation of dendrite development	cytosol|integral to membrane				skin(8)|ovary(6)|upper_aerodigestive_tract(1)|large_intestine(1)|central_nervous_system(1)	17		all_cancers(7;0.11)|all_epithelial(6;0.00126)		Colorectal(16;0.0251)|COAD - Colon adenocarcinoma(17;0.0942)		TCCAGTGATCAAGTGGAAGAA	0.507000													17	61					0	0	1	0	0
ZCCHC2	54877	broad.mit.edu	37	18	60237357	60237357	+	Missense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr18:60237357C>G	uc002lip.3	+	12	1868	c.1868C>G	c.(1867-1869)TCT>TGT	p.S623C	ZCCHC2_uc002lio.2_RNA|ZCCHC2_uc002liq.2_Missense_Mutation_p.S93C	NM_017742	NP_060212	Q9C0B9	ZCHC2_HUMAN	zinc finger, CCHC domain containing 2	623					cell communication	cytoplasm	nucleic acid binding|phosphatidylinositol binding|zinc ion binding			lung(1)|prostate(1)	2						GACATTGGCTCTGGACATGAC	0.313000													8	19					0	0	1	0	0
DOK6	220164	broad.mit.edu	37	18	67365819	67365819	+	Missense_Mutation	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr18:67365819G>A	uc002lkl.2	+	5	779	c.589G>A	c.(589-591)GAG>AAG	p.E197K		NM_152721	NP_689934	Q6PKX4	DOK6_HUMAN	docking protein 6	197	IRS-type PTB.						insulin receptor binding			upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	3		Colorectal(73;0.083)|Esophageal squamous(42;0.131)				GTTCACGTTTGAGTCAGGAAG	0.478000													16	35					0	0	1	0	0
CD226	10666	broad.mit.edu	37	18	67614259	67614259	+	Missense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr18:67614259C>G	uc010dqo.2	-	2	540	c.93G>C	c.(91-93)GAG>GAC	p.E31D	CD226_uc002lkm.3_Missense_Mutation_p.E31D	NM_006566	NP_006557	Q15762	CD226_HUMAN	CD226 molecule precursor	31	Ig-like C2-type 1.|Extracellular (Potential).				cell adhesion|cell recognition|positive regulation of Fc receptor mediated stimulatory signaling pathway|positive regulation of immunoglobulin mediated immune response|positive regulation of mast cell activation|positive regulation of natural killer cell mediated cytotoxicity directed against tumor cell target	cell surface|integral to plasma membrane|membrane raft	cell adhesion molecule binding|integrin binding|protein kinase binding|receptor activity				0		Esophageal squamous(42;0.129)				GAGACATGTTCTCGGCAAAGG	0.433000													31	84					0	0	1	0	0
NETO1	81832	broad.mit.edu	37	18	70417733	70417733	+	Missense_Mutation	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr18:70417733G>A	uc002lkw.2	-	9	1389	c.1105C>T	c.(1105-1107)CGT>TGT	p.R369C	NETO1_uc002lkx.1_Missense_Mutation_p.R368C|NETO1_uc002lky.1_Missense_Mutation_p.R369C	NM_138966	NP_620416	Q8TDF5	NETO1_HUMAN	neuropilin- and tolloid-like protein 1 isoform 3	369	Cytoplasmic (Potential).				memory|regulation of long-term neuronal synaptic plasticity|visual learning	cell junction|excitatory synapse|extracellular region|integral to membrane|postsynaptic density|postsynaptic membrane	receptor activity			ovary(2)|skin(2)	4		Esophageal squamous(42;0.129)		READ - Rectum adenocarcinoma(1;0.0487)		TACTTTTTACGAGGCTGTTTG	0.463000													35	78					0	0	1	0	0
ZNF236	7776	broad.mit.edu	37	18	74616407	74616407	+	Missense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr18:74616407G>C	uc002lmi.2	+	12	2158	c.1960G>C	c.(1960-1962)GAT>CAT	p.D654H	ZNF236_uc002lmj.2_RNA	NM_007345	NP_031371	Q9UL36	ZN236_HUMAN	zinc finger protein 236	654					cellular response to glucose stimulus	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(4)	4		Prostate(75;0.0405)|Esophageal squamous(42;0.129)|Melanoma(33;0.132)		OV - Ovarian serous cystadenocarcinoma(15;4.36e-06)|BRCA - Breast invasive adenocarcinoma(31;0.0686)		CAATGAAGCAGATAGACCATA	0.343000													17	57					0	0	1	0	0
ADNP2	22850	broad.mit.edu	37	18	77895867	77895867	+	Silent	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr18:77895867G>A	uc002lnw.2	+	4	3026	c.2571G>A	c.(2569-2571)GTG>GTA	p.V857V		NM_014913	NP_055728	Q6IQ32	ADNP2_HUMAN	ADNP homeobox 2	857					cellular response to oxidative stress|cellular response to retinoic acid|negative regulation of cell death|neuron differentiation|positive regulation of cell growth	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(4)|breast(3)|central_nervous_system(1)	8		all_cancers(4;1.06e-15)|all_epithelial(4;2.36e-10)|all_lung(4;0.000302)|Lung NSC(4;0.000518)|Esophageal squamous(42;0.0212)|Ovarian(4;0.0256)|all_hematologic(56;0.15)|Melanoma(33;0.2)		Epithelial(2;1.1e-11)|OV - Ovarian serous cystadenocarcinoma(15;7.54e-09)|BRCA - Breast invasive adenocarcinoma(31;0.00247)|STAD - Stomach adenocarcinoma(84;0.164)		CTGTGTATGTGAAGGTGAGGC	0.567000													29	80					0	0	1	0	0
THEG	51298	broad.mit.edu	37	19	362382	362382	+	Missense_Mutation	SNP	G	A	A	rs146622836		TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr19:362382G>A	uc002lol.2	-	8	997	c.958C>T	c.(958-960)CGC>TGC	p.R320C	THEG_uc002lom.2_Missense_Mutation_p.R296C	NM_016585	NP_057669	Q9P2T0	THEG_HUMAN	Theg homolog isoform 1	320					cell differentiation|chaperone-mediated protein complex assembly|multicellular organismal development|spermatogenesis	nucleus	protein binding			ovary(1)	1		all_cancers(10;1.13e-36)|all_epithelial(18;1.46e-23)|Acute lymphoblastic leukemia(61;2.53e-14)|all_hematologic(61;8.18e-10)|Lung NSC(49;1.1e-06)|all_lung(49;1.55e-06)|Breast(49;4.08e-05)|Hepatocellular(1079;0.137)|Renal(1328;0.228)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		ACCTCCCAGCGAGGATCTCGG	0.592000													7	200					0	0	1	0	0
POLRMT	5442	broad.mit.edu	37	19	621156	621156	+	Missense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr19:621156G>C	uc002lpf.1	-	10	2598	c.2542C>G	c.(2542-2544)CTC>GTC	p.L848V		NM_005035	NP_005026	O00411	RPOM_HUMAN	mitochondrial DNA-directed RNA polymerase	848	Mediates interaction with TEFM.				transcription initiation from mitochondrial promoter	mitochondrial nucleoid	DNA binding|DNA-directed RNA polymerase activity|protein binding			ovary(1)|pancreas(1)	2		all_epithelial(18;2.78e-22)|Acute lymphoblastic leukemia(61;2.53e-14)|all_hematologic(61;8.18e-10)|Lung NSC(49;3.55e-06)|all_lung(49;5.41e-06)|Breast(49;4.08e-05)|Hepatocellular(1079;0.137)|Renal(1328;0.228)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		AACCCCGTGAGATTGACCAGG	0.682000													10	58					0	0	1	0	0
POLRMT	5442	broad.mit.edu	37	19	630038	630038	+	Missense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr19:630038C>G	uc002lpf.1	-	3	380	c.324G>C	c.(322-324)CAG>CAC	p.Q108H		NM_005035	NP_005026	O00411	RPOM_HUMAN	mitochondrial DNA-directed RNA polymerase	108					transcription initiation from mitochondrial promoter	mitochondrial nucleoid	DNA binding|DNA-directed RNA polymerase activity|protein binding			ovary(1)|pancreas(1)	2		all_epithelial(18;2.78e-22)|Acute lymphoblastic leukemia(61;2.53e-14)|all_hematologic(61;8.18e-10)|Lung NSC(49;3.55e-06)|all_lung(49;5.41e-06)|Breast(49;4.08e-05)|Hepatocellular(1079;0.137)|Renal(1328;0.228)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		TGGCCCCCATCTGGACCTTCC	0.627000													18	83					0	0	1	0	0
MED16	10025	broad.mit.edu	37	19	881596	881596	+	Silent	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr19:881596G>C	uc002lqd.1	-	7	1255	c.1104C>G	c.(1102-1104)CTC>CTG	p.L368L	MED16_uc010drw.1_Silent_p.L193L|MED16_uc002lqe.2_Silent_p.L357L|MED16_uc002lqf.2_Silent_p.L357L|MED16_uc010xfv.1_Intron|MED16_uc010xfw.1_Silent_p.L357L|MED16_uc010xfx.1_Silent_p.L213L|MED16_uc010xfy.1_Intron	NM_005481	NP_005472	Q9Y2X0	MED16_HUMAN	mediator complex subunit 16	368					androgen receptor signaling pathway|positive regulation of transcription, DNA-dependent|regulation of transcription from RNA polymerase II promoter|transcription initiation from RNA polymerase II promoter	mediator complex	receptor activity|thyroid hormone receptor binding|thyroid hormone receptor coactivator activity|vitamin D receptor binding				0		Acute lymphoblastic leukemia(61;2.53e-14)|all_hematologic(61;8.18e-10)|Lung NSC(49;6.59e-06)|all_lung(49;9.97e-06)|Breast(49;9.42e-05)|Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		TGGCCACCTTGAGGTCGGTGT	0.642000													30	113					0	0	1	0	0
KISS1R	84634	broad.mit.edu	37	19	920505	920505	+	Silent	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr19:920505G>A	uc002lqk.3	+	5	1115	c.954G>A	c.(952-954)CTG>CTA	p.L318L		NM_032551	NP_115940	Q969F8	KISSR_HUMAN	G protein-coupled receptor 54	318	Helical; Name=7; (Potential).				behavior	integral to membrane|plasma membrane	neuropeptide receptor activity|protein binding			pancreas(1)	1		Acute lymphoblastic leukemia(61;2.53e-14)|all_hematologic(61;8.18e-10)|Lung NSC(49;1.04e-05)|all_lung(49;1.53e-05)|Breast(49;9.42e-05)|Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		ACTCCGCGCTGAACCCGCTGC	0.522000													3	25					0	0	1	0	0
DOT1L	84444	broad.mit.edu	37	19	2226837	2226837	+	Silent	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr19:2226837C>T	uc002lvb.3	+	27	4353	c.4317C>T	c.(4315-4317)CTC>CTT	p.L1439L	DOT1L_uc002lvc.1_Silent_p.L733L	NM_032482	NP_115871	Q8TEK3	DOT1L_HUMAN	DOT1-like, histone H3 methyltransferase	1439						nucleus	DNA binding|histone-lysine N-methyltransferase activity|protein binding			pancreas(2)|upper_aerodigestive_tract(1)|lung(1)	4		Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		GAAGCCTCCTCAGCGGCCCCG	0.756000													8	9					0	0	1	0	0
C19orf28	126321	broad.mit.edu	37	19	3557256	3557256	+	Missense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr19:3557256G>C	uc002lxz.2	-	1	316	c.146C>G	c.(145-147)TCG>TGG	p.S49W	C19orf28_uc002lxw.2_Missense_Mutation_p.S49W|C19orf28_uc002lxx.2_Missense_Mutation_p.S49W|C19orf28_uc002lxy.2_Missense_Mutation_p.S49W	NM_174983	NP_778148	Q6NUT3	CS028_HUMAN	hypothetical protein LOC126321 isoform c	49					transmembrane transport	integral to membrane				breast(1)|pancreas(1)	2		Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.00251)|STAD - Stomach adenocarcinoma(1328;0.18)		GGCGCGCACCGAGTGCAGGTA	0.692000													6	6					0	0	1	0	0
HMG20B	10362	broad.mit.edu	37	19	3576258	3576258	+	Splice_Site	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr19:3576258G>C	uc002lya.2	+	6	541	c.473_splice	c.e6-1	p.E158_splice	HMG20B_uc002lyb.2_Splice_Site_p.E56_splice|HMG20B_uc010xhn.1_Splice_Site_p.E158_splice	NM_006339	NP_006330	Q9P0W2	HM20B_HUMAN	high-mobility group 20B						blood coagulation|cell cycle|chromatin modification	chromosome|nucleoplasm	DNA binding|sequence-specific DNA binding transcription factor activity				0		Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.0025)|STAD - Stomach adenocarcinoma(1328;0.18)		TCCCCCGCCAGAAGACTCGAG	0.627000													11	65					0	0	1	0	0
FSD1	79187	broad.mit.edu	37	19	4318898	4318898	+	Missense_Mutation	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr19:4318898C>T	uc002lzy.2	+	10	1142	c.989C>T	c.(988-990)TCA>TTA	p.S330L	FSD1_uc002lzz.2_Missense_Mutation_p.S330L|FSD1_uc002maa.2_Missense_Mutation_p.S143L	NM_024333	NP_077309	Q9BTV5	FSD1_HUMAN	fibronectin type III and SPRY domain containing	330	B30.2/SPRY.				cell division|mitosis	cleavage furrow|microtubule|microtubule organizing center|nucleus				skin(1)	1				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.034)|STAD - Stomach adenocarcinoma(1328;0.18)		AGGATGCCCTCAGGTCGTGGG	0.602000													4	180					0	0	1	0	0
PLIN3	10226	broad.mit.edu	37	19	4861382	4861382	+	Missense_Mutation	SNP	C	G	G	rs141858591		TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr19:4861382C>G	uc002mbj.2	-	2	202	c.25G>C	c.(25-27)GAT>CAT	p.D9H	PLIN3_uc002mbk.2_Missense_Mutation_p.D9H|PLIN3_uc002mbl.3_Missense_Mutation_p.D9H	NM_005817	NP_005808	O60664	PLIN3_HUMAN	mannose 6 phosphate receptor binding protein 1	9					vesicle-mediated transport	endosome membrane|Golgi apparatus|lipid particle	protein binding				0					Galsulfase(DB01279)|Idursulfase(DB01271)	GTGCTGCCATCAGCCTCTGCC	0.632000													4	150					0	0	1	0	0
FUT3	2525	broad.mit.edu	37	19	5844109	5844109	+	Missense_Mutation	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr19:5844109C>T	uc002mdk.2	-	2	839	c.742G>A	c.(742-744)GAG>AAG	p.E248K	FUT3_uc002mdm.2_Missense_Mutation_p.E248K|FUT3_uc002mdj.2_Missense_Mutation_p.E248K|FUT3_uc002mdl.2_Missense_Mutation_p.E248K	NM_001097641	NP_001091110	P21217	FUT3_HUMAN	fucosyltransferase 3	248	Lumenal (Potential).				protein glycosylation	Golgi cisterna membrane|integral to membrane|membrane fraction	3-galactosyl-N-acetylglucosaminide 4-alpha-L-fucosyltransferase activity				0						AAGGAGTTCTCGAAGGCCAGG	0.627000													12	219					0	0	1	0	0
CAPS	828	broad.mit.edu	37	19	5915141	5915141	+	Missense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr19:5915141C>G	uc002mdt.2	+	4	602	c.452C>G	c.(451-453)TCT>TGT	p.S151C	CAPS_uc002mdu.2_Intron	NM_004058	NP_004049	Q13938	CAYP1_HUMAN	calcyphosine isoform a	151	4.|EF-hand 4.				intracellular signal transduction	cytoplasm	calcium ion binding				0						TTCGACTCCTCTGAGAAGGAC	0.706000													3	88					0	0	1	0	0
PEX11G	92960	broad.mit.edu	37	19	7550778	7550778	+	Silent	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr19:7550778G>C	uc002mgk.1	-	2	204	c.195C>G	c.(193-195)CTC>CTG	p.L65L	PEX11G_uc002mgl.1_5'UTR	NM_080662	NP_542393	Q96HA9	PX11C_HUMAN	peroxisomal biogenesis factor 11 gamma	65	Cytoplasmic (Potential).					integral to membrane|peroxisomal membrane					0						GGTCATCAAAGAGTCGCAAGA	0.567000													30	106					0	0	1	0	0
XAB2	56949	broad.mit.edu	37	19	7689278	7689278	+	Silent	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr19:7689278G>A	uc002mgx.2	-	7	902	c.876C>T	c.(874-876)TTC>TTT	p.F292F		NM_020196	NP_064581	Q9HCS7	SYF1_HUMAN	XPA binding protein 2	292	HAT 8.				transcription, DNA-dependent|transcription-coupled nucleotide-excision repair	catalytic step 2 spliceosome|nucleoplasm	protein binding			central_nervous_system(2)|breast(1)|skin(1)	4						ACACCTGTGTGAAGTCCCGCA	0.642000								Direct_reversal_of_damage|NER					30	71					0	0	1	0	0
XAB2	56949	broad.mit.edu	37	19	7693181	7693181	+	Missense_Mutation	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr19:7693181C>T	uc002mgx.2	-	2	81	c.55G>A	c.(55-57)GAA>AAA	p.E19K	uc010dvi.1_5'Flank	NM_020196	NP_064581	Q9HCS7	SYF1_HUMAN	XPA binding protein 2	19	HAT 1.				transcription, DNA-dependent|transcription-coupled nucleotide-excision repair	catalytic step 2 spliceosome|nucleoplasm	protein binding			central_nervous_system(2)|breast(1)|skin(1)	4						AGGTCCTCTTCCTCCTGCCAG	0.582000								Direct_reversal_of_damage|NER					10	49					0	0	1	0	0
CLEC4G	339390	broad.mit.edu	37	19	7795304	7795304	+	Silent	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr19:7795304G>A	uc002mhp.3	-	6	480	c.411C>T	c.(409-411)GCC>GCT	p.A137A		NM_198492	NP_940894	Q6UXB4	CLC4G_HUMAN	C-type lectin domain family 4, member G	137	Extracellular (Potential).					integral to membrane	protein binding|sugar binding				0						GGCCCCTGCCGGCTTCAGCCA	0.682000													12	62					0	0	1	0	0
CD320	51293	broad.mit.edu	37	19	8373047	8373047	+	Missense_Mutation	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr19:8373047G>A	uc002mjj.1	-	1	193	c.128C>T	c.(127-129)TCT>TTT	p.S43F	CD320_uc002mjk.1_RNA|CD320_uc002mjl.1_Missense_Mutation_p.S43F	NM_016579	NP_057663	Q9NPF0	CD320_HUMAN	8D6 antigen isoform 1 precursor	43	Extracellular (Potential).				regulation of cell growth	endoplasmic reticulum|integral to membrane	growth factor activity				0						GGCCTGGGCAGAGGTCGGGGT	0.751000													3	8					0	0	1	0	0
MUC16	94025	broad.mit.edu	37	19	9014193	9014193	+	Missense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr19:9014193G>C	uc002mkp.2	-	32	38659	c.38455C>G	c.(38455-38457)CAG>GAG	p.Q12819E	MUC16_uc010xki.1_5'Flank	NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	12821	Extracellular (Potential).			Missing (in Ref. 3; AAK74120).	cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						GCAGAGGTCTGATGGGTGAAA	0.527000													11	57					0	0	1	0	0
MUC16	94025	broad.mit.edu	37	19	9071870	9071870	+	Silent	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr19:9071870C>T	uc002mkp.2	-	3	15780	c.15576G>A	c.(15574-15576)CTG>CTA	p.L5192L		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	5194	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						TGGTCTCTCTCAGTCTAGGAG	0.478000													9	304					0	0	1	0	0
OR7D2	162998	broad.mit.edu	37	19	9296768	9296768	+	Missense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr19:9296768C>G	uc002mkz.1	+	1	499	c.311C>G	c.(310-312)TCC>TGC	p.S104C		NM_175883	NP_787079	Q96RA2	OR7D2_HUMAN	olfactory receptor, family 7, subfamily D,	104	Helical; Name=3; (Potential).				regulation of transcription, DNA-dependent|sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|upper_aerodigestive_tract(1)	3						GTCTATTTCTCCATGTTTTTT	0.493000													3	236					0	0	1	0	0
OR7D2	162998	broad.mit.edu	37	19	9296862	9296862	+	Missense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr19:9296862C>G	uc002mkz.1	+	1	593	c.405C>G	c.(403-405)ATC>ATG	p.I135M		NM_175883	NP_787079	Q96RA2	OR7D2_HUMAN	olfactory receptor, family 7, subfamily D,	135	Cytoplasmic (Potential).				regulation of transcription, DNA-dependent|sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|upper_aerodigestive_tract(1)	3						ATATGATCATCATGAACCCCC	0.483000													7	308					0	0	1	0	0
OLFM2	93145	broad.mit.edu	37	19	9968420	9968420	+	Missense_Mutation	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr19:9968420C>T	uc002mmp.2	-	3	359	c.331G>A	c.(331-333)GAT>AAT	p.D111N	OLFM2_uc002mmo.2_Missense_Mutation_p.D33N	NM_058164	NP_477512	O95897	NOE2_HUMAN	olfactomedin 2 precursor	111						extracellular region				large_intestine(1)|skin(1)	2						AGGGACCCATCAGCTGCCCGG	0.577000													18	61					0	0	1	0	0
YIPF2	78992	broad.mit.edu	37	19	11034792	11034792	+	Silent	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr19:11034792C>T	uc002mqb.2	-	6	568	c.444G>A	c.(442-444)AGG>AGA	p.R148R	YIPF2_uc002mqc.2_Silent_p.R148R	NM_024029	NP_076934	Q9BWQ6	YIPF2_HUMAN	Yip1 domain family, member 2	148	Lumenal (Potential).					integral to membrane|transport vesicle					0						AGGGGTCCCTCCTCTGGGCCA	0.662000													8	43					0	0	1	0	0
RAB3D	9545	broad.mit.edu	37	19	11446153	11446153	+	Missense_Mutation	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr19:11446153C>T	uc002mqy.2	-	4	680	c.442G>A	c.(442-444)GAG>AAG	p.E148K		NM_004283	NP_004274	O95716	RAB3D_HUMAN	RAB3D, member RAS oncogene family	148					exocytosis|protein transport|small GTPase mediated signal transduction	plasma membrane	GTP binding|GTPase activity			ovary(2)	2						CGGCCATCCTCAGCAGGCACA	0.612000													18	51					0	0	1	0	0
C19orf39	126074	broad.mit.edu	37	19	11486627	11486627	+	Missense_Mutation	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr19:11486627C>T	uc002mrg.1	+	2	662	c.625C>T	c.(625-627)CCG>TCG	p.P209S		NM_175871	NP_787067	Q6NVH7	CS039_HUMAN	hypothetical protein LOC126074	209											0						GATGATCGCTCCGTGGCCCAC	0.527000													4	24					0	0	1	0	0
ZNF878	729747	broad.mit.edu	37	19	12155223	12155223	+	Silent	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr19:12155223C>T	uc002mta.1	-	5	1134	c.1134G>A	c.(1132-1134)AAG>AAA	p.K378K		NM_001080404	NP_001073873	C9JN71	ZN878_HUMAN	zinc finger protein 878	331	C2H2-type 8.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	nucleic acid binding|zinc ion binding				0						CAGTGTGAGTCTTTTCATGAT	0.393000													30	95					0	0	1	0	0
FBXW9	84261	broad.mit.edu	37	19	12800031	12800031	+	RNA	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr19:12800031C>T	uc010xmp.1	-	8		c.1183G>A			uc002mul.1_Nonsense_Mutation_p.Q97*|FBXW9_uc002mum.1_Silent_p.*459*|FBXW9_uc002mun.1_Silent_p.*296*|FBXW9_uc010dyx.2_Silent_p.*479*			Q5XUX1	FBXW9_HUMAN	Homo sapiens cDNA FLJ41042 fis, clone NT2RI2005166, highly similar to F-box/WD repeat protein 9.								protein binding			ovary(1)	1						CCCACCTGCTCAGGCCTGCAG	0.647000													17	40					0	0	1	0	0
LPHN1	22859	broad.mit.edu	37	19	14262963	14262963	+	Splice_Site	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr19:14262963C>T	uc010xnn.1	-	23	3961	c.3665_splice	c.e23-1	p.G1222_splice	LPHN1_uc010xno.1_Splice_Site_p.G1217_splice|uc002myf.2_Intron	NM_001008701	NP_001008701	O94910	LPHN1_HUMAN	latrophilin 1 isoform 1 precursor						neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity|sugar binding			ovary(2)|lung(2)|central_nervous_system(1)	5						CGGTAGCTCCCTGCAGGTGGC	0.562000													11	107					0	0	1	0	0
LPHN1	22859	broad.mit.edu	37	19	14271452	14271452	+	Missense_Mutation	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr19:14271452C>T	uc010xnn.1	-	8	1878	c.1582G>A	c.(1582-1584)GAC>AAC	p.D528N	LPHN1_uc010xno.1_Missense_Mutation_p.D523N|uc002myf.2_Intron	NM_001008701	NP_001008701	O94910	LPHN1_HUMAN	latrophilin 1 isoform 1 precursor	528	Extracellular (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity|sugar binding			ovary(2)|lung(2)|central_nervous_system(1)	5						TTGCTGAGGTCAGGGCCCCGG	0.537000													7	17					0	0	1	0	0
DNAJB1	3337	broad.mit.edu	37	19	14629110	14629110	+	Missense_Mutation	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr19:14629110C>T	uc002myz.1	-	1	92	c.52G>A	c.(52-54)GAG>AAG	p.E18K	DNAJB1_uc010xnr.1_Intron	NM_006145	NP_006136	P25685	DNJB1_HUMAN	DnaJ (Hsp40) homolog, subfamily B, member 1	18	J.				chaperone cofactor-dependent protein refolding|response to unfolded protein	cytoplasm|nucleolus	heat shock protein binding|unfolded protein binding				0				GBM - Glioblastoma multiforme(1328;0.0476)		TTGATCTCCTCGTCCGACGCG	0.701000													11	31					0	0	1	0	0
AKAP8	10270	broad.mit.edu	37	19	15465808	15465808	+	Missense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr19:15465808C>G	uc002nav.2	-	14	2058	c.1997G>C	c.(1996-1998)AGA>ACA	p.R666T	AKAP8_uc010dzy.2_Missense_Mutation_p.R215T	NM_005858	NP_005849	O43823	AKAP8_HUMAN	A-kinase anchor protein 8	666					signal transduction	nuclear matrix				ovary(1)|breast(1)	2						AGGAGCAACTCTGGTTTGGGC	0.567000													25	77					0	0	1	0	0
OR10H3	26532	broad.mit.edu	37	19	15852820	15852820	+	Silent	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr19:15852820C>T	uc010xoq.1	+	1	618	c.618C>T	c.(616-618)GTC>GTT	p.V206V		NM_013938	NP_039226	O60404	O10H3_HUMAN	olfactory receptor, family 10, subfamily H,	206	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						TGGTGTGTGTCACAGCCCTGA	0.498000													60	211					0	0	1	0	0
OR10H3	26532	broad.mit.edu	37	19	15853003	15853003	+	Silent	SNP	C	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr19:15853003C>A	uc010xoq.1	+	1	801	c.801C>A	c.(799-801)CTC>CTA	p.L267L		NM_013938	NP_039226	O60404	O10H3_HUMAN	olfactory receptor, family 10, subfamily H,	267	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						CCAAGGGCCTCCATTCTATGT	0.498000													65	168					6.75472e-32	7.08698e-32	1	1	0
OR10H1	26539	broad.mit.edu	37	19	15918293	15918293	+	Silent	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr19:15918293C>T	uc002nbq.2	-	1	644	c.555G>A	c.(553-555)TTG>TTA	p.L185L		NM_013940	NP_039228	Q9Y4A9	O10H1_HUMAN	olfactory receptor, family 10, subfamily H,	185	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						AGGCCAACTTCAACAGAGGTG	0.572000													30	89					0	0	1	0	0
CIB3	117286	broad.mit.edu	37	19	16275611	16275611	+	Missense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr19:16275611C>G	uc002nds.2	-	5	460	c.460G>C	c.(460-462)GAT>CAT	p.D154H	CIB3_uc010eae.2_Missense_Mutation_p.D93H|CIB3_uc010eaf.2_RNA|CIB3_uc010eag.2_Missense_Mutation_p.D105H	NM_054113	NP_473454	Q96Q77	CIB3_HUMAN	DNA-dependent protein kinase catalytic	154	EF-hand 3.						calcium ion binding			ovary(1)	1						TCAGCCTCATCCAGCACCTTC	0.597000													23	82					0	0	1	0	0
ANO8	57719	broad.mit.edu	37	19	17444512	17444512	+	Silent	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr19:17444512C>T	uc002ngf.2	-	2	363	c.204G>A	c.(202-204)CTG>CTA	p.L68L	ANO8_uc010eap.2_RNA|GTPBP3_uc010xpo.1_5'Flank	NM_020959	NP_066010	Q9HCE9	ANO8_HUMAN	anoctamin 8	68	Extracellular (Potential).					chloride channel complex	chloride channel activity			ovary(3)	3						GGAAGGTCATCAGCACGTCGC	0.527000													5	21					0	0	1	0	0
PLVAP	83483	broad.mit.edu	37	19	17476175	17476175	+	Missense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr19:17476175C>G	uc002ngk.1	-	3	1149	c.1099G>C	c.(1099-1101)GAG>CAG	p.E367Q		NM_031310	NP_112600	Q9BX97	PLVAP_HUMAN	plasmalemma vesicle associated protein	367	Potential.|Extracellular (Potential).					caveola|integral to membrane|perinuclear region of cytoplasm					0						CTCTTCTTCTCTTCCAGCTCC	0.617000													45	121					0	0	1	0	0
SLC5A5	6528	broad.mit.edu	37	19	18001725	18001725	+	Missense_Mutation	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr19:18001725G>A	uc002nhr.3	+	14	2029	c.1682G>A	c.(1681-1683)GGA>GAA	p.G561E		NM_000453	NP_000444	Q92911	SC5A5_HUMAN	solute carrier family 5 (sodium iodide	561	Cytoplasmic (Potential).				cellular nitrogen compound metabolic process|cellular response to cAMP|cellular response to gonadotropin stimulus|hormone biosynthetic process	integral to membrane|nucleus|plasma membrane	iodide transmembrane transporter activity|sodium:iodide symporter activity			skin(2)|ovary(1)|central_nervous_system(1)	4						CTGGCCCCGGGATTGTTGTGG	0.602000													65	206					0	0	1	0	0
MAST3	23031	broad.mit.edu	37	19	18254649	18254649	+	Missense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr19:18254649C>G	uc002nhz.3	+	21	2329	c.2329C>G	c.(2329-2331)CTC>GTC	p.L777V		NM_015016	NP_055831	O60307	MAST3_HUMAN	microtubule associated serine/threonine kinase	777							ATP binding|magnesium ion binding|protein binding|protein serine/threonine kinase activity			large_intestine(2)|ovary(2)|stomach(1)	5						CAGCCCATCTCTCCTGAATAC	0.612000													13	34					0	0	1	0	0
TMEM59L	25789	broad.mit.edu	37	19	18731229	18731229	+	Silent	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr19:18731229G>A	uc002njy.3	+	8	999	c.912G>A	c.(910-912)CTG>CTA	p.L304L		NM_012109	NP_036241	Q9UK28	TM59L_HUMAN	brain-specific membrane-anchored protein	304						Golgi membrane|integral to membrane|membrane fraction				ovary(2)|skin(2)	4						CTCTGACCCTGGAGCAGCACA	0.632000													5	129					0	0	1	0	0
CRTC1	23373	broad.mit.edu	37	19	18879564	18879564	+	Missense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr19:18879564G>C	uc002nkb.3	+	10	1369	c.1281G>C	c.(1279-1281)GAG>GAC	p.E427D	CRTC1_uc010ebv.2_Missense_Mutation_p.E443D|CRTC1_uc010ebw.2_Missense_Mutation_p.E292D|CRTC1_uc002nkc.3_Intron	NM_015321	NP_056136	Q6UUV9	CRTC1_HUMAN	mucoepidermoid carcinoma translocated 1 isoform	427					interspecies interaction between organisms|positive regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	cytoplasm|nucleus|plasma membrane	cAMP response element binding protein binding|protein binding		CRTC1/MAML2(516)	salivary_gland(474)|lung(35)|thyroid(4)|breast(3)|skin(2)|ovary(1)	519						CCCCCCCAGAGAACCCTGGCC	0.697000													4	11					0	0	1	0	0
COMP	1311	broad.mit.edu	37	19	18896802	18896802	+	Missense_Mutation	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr19:18896802G>A	uc002nke.2	-	13	1498	c.1462C>T	c.(1462-1464)CCT>TCT	p.P488S	COMP_uc002nkd.2_Missense_Mutation_p.P455S|COMP_uc010xqj.1_Missense_Mutation_p.P435S	NM_000095	NP_000086	P49747	COMP_HUMAN	cartilage oligomeric matrix protein precursor	488	TSP type-3 7.				anti-apoptosis|apoptosis|cell adhesion|limb development	extracellular space|proteinaceous extracellular matrix	calcium ion binding|collagen binding|extracellular matrix structural constituent|heparan sulfate proteoglycan binding|heparin binding				0						CCGGGGTTAGGCACCAGGCGG	0.721000													5	33					0	0	1	0	0
SLC25A42	284439	broad.mit.edu	37	19	19221592	19221592	+	Missense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr19:19221592G>C	uc002nlf.1	+	8	1015	c.864G>C	c.(862-864)TTG>TTC	p.L288F		NM_178526	NP_848621	Q86VD7	S2542_HUMAN	solute carrier family 25, member 42	288	Solcar 3.				transmembrane transport	integral to membrane|mitochondrial inner membrane	binding				0			OV - Ovarian serous cystadenocarcinoma(5;5.4e-06)|Epithelial(12;0.000497)			ACAAAGGCTTGAGCATGAACT	0.682000													11	59					0	0	1	0	0
ATP13A1	57130	broad.mit.edu	37	19	19758021	19758021	+	Missense_Mutation	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr19:19758021C>T	uc002nnh.3	-	22	3050	c.3022G>A	c.(3022-3024)GAG>AAG	p.E1008K	ATP13A1_uc002nne.2_Missense_Mutation_p.E148K|ATP13A1_uc002nnf.3_Missense_Mutation_p.E376K|ATP13A1_uc002nng.2_Missense_Mutation_p.E890K	NM_020410	NP_065143	Q9HD20	AT131_HUMAN	ATPase type 13A1	1008	Helical; (Potential).				ATP biosynthetic process|cation transport	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|metal ion binding			ovary(3)|large_intestine(2)|central_nervous_system(1)	6						TTGACTCCCTCCAGGTAGAGG	0.622000													24	79					0	0	1	0	0
ZNF626	199777	broad.mit.edu	37	19	20808319	20808319	+	Missense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr19:20808319C>G	uc002npb.1	-	4	514	c.364G>C	c.(364-366)GAG>CAG	p.E122Q	ZNF626_uc002npc.1_Missense_Mutation_p.E46Q	NM_001076675	NP_001070143	Q68DY1	ZN626_HUMAN	zinc finger protein 626 isoform 1	122					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(1)	1						ACCTTACACTCATCCACACTT	0.328000													20	116					0	0	1	0	0
Unknown	0	broad.mit.edu	37	19	23414089	23414089	+	Missense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr19:23414089C>G	uc010xri.1	-	3	323	c.205G>C	c.(205-207)GAG>CAG	p.E69Q						SubName: Full=cDNA FLJ56866, moderately similar to Zinc finger protein 43;																		GCCACCATCTCATGTCTCTCC	0.428000													19	128					0	0	1	0	0
ZNF91	7644	broad.mit.edu	37	19	23543184	23543184	+	Missense_Mutation	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr19:23543184G>A	uc002nre.2	-	4	2710	c.2597C>T	c.(2596-2598)TCT>TTT	p.S866F	ZNF91_uc002nrd.2_5'Flank|ZNF91_uc010xrj.1_Missense_Mutation_p.S834F	NM_003430	NP_003421	Q05481	ZNF91_HUMAN	zinc finger protein 91	866	C2H2-type 26.					nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0		all_lung(12;0.0349)|Lung NSC(12;0.0538)|all_epithelial(12;0.0611)				AAGATTTGAAGATTGATTAAA	0.358000													24	71					0	0	1	0	0
CCDC123	84902	broad.mit.edu	37	19	33444634	33444634	+	Missense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr19:33444634C>G	uc002nty.2	-	4	468	c.379G>C	c.(379-381)GAG>CAG	p.E127Q	CCDC123_uc002ntx.2_5'UTR|CCDC123_uc010edg.2_RNA|CCDC123_uc002ntz.1_Missense_Mutation_p.E127Q|CCDC123_uc002nua.2_Missense_Mutation_p.E127Q|CCDC123_uc002nub.1_Missense_Mutation_p.E19Q	NM_032816	NP_116205	Q96ST8	CEP89_HUMAN	coiled-coil domain containing 123	127						centrosome|spindle pole					0	Esophageal squamous(110;0.137)					TCAATGTCCTCTTCGTCCCCA	0.507000													45	148					0	0	1	0	0
CEBPA	1050	broad.mit.edu	37	19	33792481	33792481	+	Missense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr19:33792481C>G	uc002nun.2	-	1	950	c.840G>C	c.(838-840)AAG>AAC	p.K280N	LOC80054_uc002nuo.2_5'Flank	NM_004364	NP_004355	P49715	CEBPA_HUMAN	CCAAT/enhancer binding protein alpha	280					cytokine-mediated signaling pathway|generation of precursor metabolites and energy|interspecies interaction between organisms|positive regulation of transcription from RNA polymerase III promoter		sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|transcription factor binding|transcription regulatory region DNA binding	p.H200_K352>Q(1)|p.?(1)		haematopoietic_and_lymphoid_tissue(728)|lung(4)|stomach(1)|prostate(1)	734	Esophageal squamous(110;0.137)					CGTTGCTGTTCTTGTCCACCG	0.677000			Mis|N|F		AML|MDS				Acute_Myeloid_Leukemia_Familial_associated_with_CEBPA_germline_mutation				7	22					0	0	1	0	0
ZNF792	126375	broad.mit.edu	37	19	35450195	35450195	+	Missense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr19:35450195G>C	uc002nxh.1	-	4	951	c.564C>G	c.(562-564)ATC>ATG	p.I188M		NM_175872	NP_787068	Q3KQV3	ZN792_HUMAN	zinc finger protein 792	188					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0	all_lung(56;4.18e-08)|Lung NSC(56;6.62e-08)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.0849)			CCTCCGTTCTGATAGGGTTGT	0.542000													11	456					0	0	1	0	0
HAUS5	23354	broad.mit.edu	37	19	36104692	36104692	+	Missense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr19:36104692G>C	uc002oam.1	+	2	210	c.159G>C	c.(157-159)CAG>CAC	p.Q53H		NM_015302	NP_056117	O94927	HAUS5_HUMAN	HAUS augmin-like complex, subunit 5	53					cell division|centrosome organization|mitosis|spindle assembly	centrosome|HAUS complex|microtubule|spindle					0						TGCACAGTCAGAGGTAAGCTG	0.582000													32	82					0	0	1	0	0
HAUS5	23354	broad.mit.edu	37	19	36104782	36104782	+	Silent	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr19:36104782G>A	uc002oam.1	+	3	225	c.174G>A	c.(172-174)AAG>AAA	p.K58K		NM_015302	NP_056117	O94927	HAUS5_HUMAN	HAUS augmin-like complex, subunit 5	58					cell division|centrosome organization|mitosis|spindle assembly	centrosome|HAUS complex|microtubule|spindle					0						CTGTCAAGAAGATCCGGGGAA	0.542000													34	121					0	0	1	0	0
C19orf55	148137	broad.mit.edu	37	19	36258752	36258752	+	Silent	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr19:36258752G>A	uc002obq.1	+	9	1078	c.1005G>A	c.(1003-1005)GTG>GTA	p.V335V		NM_001039887	NP_001034976	Q2NL68	CS055_HUMAN	hypothetical protein LOC148137	335										ovary(1)	1	all_lung(56;2.87e-07)|Lung NSC(56;4.32e-07)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.0515)			CGGGGTCAGTGATACGGAAGA	0.642000													9	14					0	0	1	0	0
NPHS1	4868	broad.mit.edu	37	19	36330458	36330458	+	Missense_Mutation	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr19:36330458G>A	uc002oby.2	-	21	2867	c.2867C>T	c.(2866-2868)TCC>TTC	p.S956F	NPHS1_uc010eem.1_5'Flank	NM_004646	NP_004637	O60500	NPHN_HUMAN	nephrin precursor	956	Fibronectin type-III.|Extracellular (Potential).				cell adhesion|excretion|muscle organ development	integral to plasma membrane				ovary(4)|skin(1)	5	all_lung(56;7.14e-07)|Lung NSC(56;1.12e-06)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.0515)			CAGCCCCACGGAGTGTGGGGT	0.567000													26	110					0	0	1	0	0
WDR62	284403	broad.mit.edu	37	19	36595563	36595563	+	Missense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr19:36595563G>C	uc002odc.2	+	31	4373	c.4282G>C	c.(4282-4284)GAC>CAC	p.D1428H	WDR62_uc002odd.2_Missense_Mutation_p.D1433H	NM_173636	NP_775907	O43379	WDR62_HUMAN	WD repeat domain 62 isoform 2	1428					cerebral cortex development	nucleus					0	Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.06)			AGAAGCCCTCGACCTTTACCG	0.632000													13	56					0	0	1	0	0
ZNF607	84775	broad.mit.edu	37	19	38189024	38189024	+	Missense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr19:38189024C>G	uc002ohc.1	-	5	2604	c.2008G>C	c.(2008-2010)GAG>CAG	p.E670Q	ZNF607_uc002ohb.1_Missense_Mutation_p.E669Q	NM_032689	NP_116078	Q96SK3	ZN607_HUMAN	zinc finger protein 607	670					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0			UCEC - Uterine corpus endometrioid carcinoma (49;0.0775)			AAGGGTTTCTCACCAGTATGA	0.368000													49	136					0	0	1	0	0
ZNF573	126231	broad.mit.edu	37	19	38230010	38230010	+	Missense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr19:38230010G>C	uc002ohe.2	-	4	1403	c.1381C>G	c.(1381-1383)CAG>GAG	p.Q461E	ZNF573_uc010efs.2_Missense_Mutation_p.Q374E|ZNF573_uc002ohd.2_Missense_Mutation_p.Q459E|ZNF573_uc002ohf.2_Missense_Mutation_p.Q403E|ZNF573_uc002ohg.2_Missense_Mutation_p.Q373E	NM_152360	NP_689573	Q86YE8	ZN573_HUMAN	zinc finger protein 573	441	C2H2-type 12.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1			UCEC - Uterine corpus endometrioid carcinoma (49;0.0775)|Lung(45;0.0813)|LUSC - Lung squamous cell carcinoma(53;0.146)			TGAATATTCTGATGTCGAGTA	0.353000													5	156					0	0	1	0	0
ZNF573	126231	broad.mit.edu	37	19	38230352	38230352	+	Missense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr19:38230352G>C	uc002ohe.2	-	4	1061	c.1039C>G	c.(1039-1041)CTA>GTA	p.L347V	ZNF573_uc010efs.2_Missense_Mutation_p.L260V|ZNF573_uc002ohd.2_Missense_Mutation_p.L345V|ZNF573_uc002ohf.2_Missense_Mutation_p.L289V|ZNF573_uc002ohg.2_Missense_Mutation_p.L259V	NM_152360	NP_689573	Q86YE8	ZN573_HUMAN	zinc finger protein 573	327	C2H2-type 8.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1			UCEC - Uterine corpus endometrioid carcinoma (49;0.0775)|Lung(45;0.0813)|LUSC - Lung squamous cell carcinoma(53;0.146)			CTCTGATGTAGAAGAAAGTAT	0.383000													30	106					0	0	1	0	0
RASGRP4	115727	broad.mit.edu	37	19	38910838	38910838	+	Missense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr19:38910838G>C	uc002oir.2	-	5	656	c.442C>G	c.(442-444)CGT>GGT	p.R148G	RASGRP4_uc010efz.1_RNA|RASGRP4_uc010ega.1_RNA|RASGRP4_uc010xua.1_Missense_Mutation_p.R148G|RASGRP4_uc010xub.1_Missense_Mutation_p.R148G|RASGRP4_uc010xuc.1_Missense_Mutation_p.R148G|RASGRP4_uc010xud.1_Missense_Mutation_p.R148G|RASGRP4_uc010xue.1_Missense_Mutation_p.R148G|RASGRP4_uc010egb.2_Missense_Mutation_p.R148G	NM_170604	NP_733749	Q8TDF6	GRP4_HUMAN	RAS guanyl releasing protein 4 isoform a	148	N-terminal Ras-GEF.				activation of phospholipase C activity|cell growth|cell proliferation|myeloid cell differentiation|positive regulation of Ras protein signal transduction|regulation of G-protein coupled receptor protein signaling pathway|response to extracellular stimulus|small GTPase mediated signal transduction|transmembrane receptor protein tyrosine kinase signaling pathway	cytoplasm|membrane fraction|plasma membrane|soluble fraction	diacylglycerol binding|GTP-dependent protein binding|metal ion binding|Ras guanyl-nucleotide exchange factor activity			pancreas(1)|lung(1)|skin(1)	3	all_cancers(60;4.21e-06)		Lung(45;0.00172)|LUSC - Lung squamous cell carcinoma(53;0.00272)			GCCCAGAAACGACCTATGACT	0.602000													12	22					0	0	1	0	0
ECH1	1891	broad.mit.edu	37	19	39306254	39306254	+	Silent	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr19:39306254C>T	uc002oji.2	-	10	1071	c.986G>A	c.(985-987)TGA>TAA	p.*329*	LGALS4_uc002ojg.2_5'Flank|LGALS4_uc010xuj.1_5'Flank|ECH1_uc002ojh.2_Silent_p.*209*	NM_001398	NP_001389	Q13011	ECH1_HUMAN	peroxisomal enoyl-coenzyme A hydratase-like	329					fatty acid beta-oxidation|generation of precursor metabolites and energy	mitochondrion|peroxisome	enoyl-CoA hydratase activity|isomerase activity|protein binding			ovary(1)	1	all_cancers(60;9.36e-06)|Ovarian(47;0.0454)		Lung(45;0.00342)|LUSC - Lung squamous cell carcinoma(53;0.00575)			CGAGGGCTCTCAGAGCTTGGA	0.592000													10	40					0	0	1	0	0
IL28A	282616	broad.mit.edu	37	19	39760152	39760152	+	Missense_Mutation	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr19:39760152G>A	uc002oku.1	+	4	347	c.295G>A	c.(295-297)GAG>AAG	p.E99K		NM_172138	NP_742150	Q8IZJ0	IL28A_HUMAN	interleukin 28A precursor	99					response to virus	extracellular space	cytokine activity			ovary(1)|skin(1)	2	all_cancers(60;1.85e-07)|all_lung(34;4.03e-08)|Lung NSC(34;4.66e-08)|all_epithelial(25;6.4e-07)|Ovarian(47;0.0512)		Epithelial(26;5.39e-26)|all cancers(26;4.1e-23)|Lung(45;0.000278)|LUSC - Lung squamous cell carcinoma(53;0.000335)			CATGGCTTTGGAGGCTGAGCT	0.418000													18	55					0	0	1	0	0
LRFN1	57622	broad.mit.edu	37	19	39798861	39798861	+	Silent	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr19:39798861G>C	uc002okw.2	-	2	1728	c.1728C>G	c.(1726-1728)CTC>CTG	p.L576L		NM_020862	NP_065913	Q9P244	LRFN1_HUMAN	leucine rich repeat and fibronectin type III	576	Cytoplasmic (Potential).					cell junction|integral to membrane|postsynaptic density|postsynaptic membrane				ovary(2)	2	all_cancers(60;1.85e-07)|all_lung(34;4.03e-08)|Lung NSC(34;4.66e-08)|all_epithelial(25;6.4e-07)|Ovarian(47;0.0512)		Epithelial(26;1.96e-27)|all cancers(26;2.05e-24)|Lung(45;0.000278)|LUSC - Lung squamous cell carcinoma(53;0.000335)			TGACCCGCGGGAGCGACCTGG	0.692000													4	22					0	0	1	0	0
AKT2	208	broad.mit.edu	37	19	40771139	40771139	+	Silent	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr19:40771139G>A	uc002onf.2	-	2	298	c.36C>T	c.(34-36)CTC>CTT	p.L12L	AKT2_uc010egs.2_Silent_p.L12L|AKT2_uc010egt.2_Intron|AKT2_uc010xvj.1_Intron|AKT2_uc010egu.1_Intron|AKT2_uc010xvk.1_Silent_p.L12L	NM_001626	NP_001617	P31751	AKT2_HUMAN	AKT2 kinase	12	PH.				insulin receptor signaling pathway|negative regulation of plasma membrane long-chain fatty acid transport|positive regulation of fatty acid beta-oxidation|positive regulation of glucose import|positive regulation of glycogen biosynthetic process	cytosol|nucleus	ATP binding|protein binding|protein serine/threonine kinase activity			lung(2)	2			Lung(22;0.000499)			CACGCTTGTGGAGCCAGCCTT	0.602000			A		ovarian|pancreatic 								4	24					0	0	1	0	0
LTBP4	8425	broad.mit.edu	37	19	41111433	41111433	+	Missense_Mutation	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr19:41111433G>A	uc002ooh.1	+	6	766	c.766G>A	c.(766-768)GAA>AAA	p.E256K	LTBP4_uc002oog.1_Missense_Mutation_p.E219K|LTBP4_uc002ooi.1_Missense_Mutation_p.E189K	NM_001042544	NP_001036009	Q8N2S1	LTBP4_HUMAN	latent transforming growth factor beta binding	256					growth hormone secretion|multicellular organismal development|protein folding|regulation of cell differentiation|regulation of cell growth|regulation of proteolysis|regulation of transforming growth factor beta receptor signaling pathway	extracellular space|proteinaceous extracellular matrix	calcium ion binding|glycosaminoglycan binding|integrin binding|transforming growth factor beta binding|transforming growth factor beta receptor activity			central_nervous_system(1)	1			Lung(22;0.000158)|LUSC - Lung squamous cell carcinoma(20;0.000384)			ggcgcgggcggaagcggcggc	0.458000													6	17					0	0	1	0	0
ATP5SL	55101	broad.mit.edu	37	19	41944235	41944235	+	Nonsense_Mutation	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr19:41944235G>A	uc002oqw.1	-	2	109	c.103C>T	c.(103-105)CAG>TAG	p.Q35*	CYP2F1_uc010xvw.1_Intron|ATP5SL_uc002oqu.1_RNA|ATP5SL_uc002oqv.2_Nonsense_Mutation_p.Q41*|ATP5SL_uc010xwa.1_Nonsense_Mutation_p.Q41*|ATP5SL_uc002oqx.1_Nonsense_Mutation_p.Q35*|ATP5SL_uc002oqy.1_Nonsense_Mutation_p.Q35*|ATP5SL_uc002oqz.1_Nonsense_Mutation_p.Q35*|ATP5SL_uc002ora.1_Nonsense_Mutation_p.Q22*|ATP5SL_uc010xwb.1_Nonsense_Mutation_p.Q41*	NM_018035	NP_060505	Q9NW81	AT5SL_HUMAN	ATP5S-like	35										large_intestine(1)|breast(1)	2						TTCTTCTTCTGATTGCCCTCT	0.572000													36	93					0	0	1	0	0
ERF	2077	broad.mit.edu	37	19	42753675	42753675	+	Nonsense_Mutation	SNP	C	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr19:42753675C>A	uc002ote.3	-	4	747	c.589G>T	c.(589-591)GAG>TAG	p.E197*	ERF_uc002otd.3_5'UTR	NM_006494	NP_006485	P50548	ERF_HUMAN	Ets2 repressor factor	197					cell proliferation|regulation of transcription from RNA polymerase II promoter	nucleus	ligand-regulated transcription factor activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription corepressor activity			lung(1)|kidney(1)|central_nervous_system(1)|skin(1)	4		Prostate(69;0.00682)				AGCGGTTCCTCCAGCTCTGAC	0.687000													11	56					3.86212e-05	3.93826e-05	1	1	0
PSG6	5675	broad.mit.edu	37	19	43411294	43411294	+	Silent	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr19:43411294G>A	uc002ovj.1	-	5	1072	c.1020C>T	c.(1018-1020)TTC>TTT	p.F340F	PSG3_uc002ouf.2_Intron|PSG11_uc002ouw.2_Intron|PSG7_uc002ous.1_Intron|PSG7_uc002out.1_Intron|PSG10_uc002ouv.1_Intron|PSG6_uc002ovh.1_Silent_p.F347F|PSG6_uc002ovi.2_Silent_p.F341F|PSG6_uc010xwk.1_Silent_p.F180F|PSG11_uc002ovk.1_Silent_p.F339F|PSG6_uc002ove.1_Silent_p.F130F|PSG6_uc002ovf.1_Silent_p.F247F|PSG6_uc002ovg.1_Silent_p.F340F	NM_002782	NP_002773	Q00889	PSG6_HUMAN	pregnancy specific beta-1-glycoprotein 6 isoform	340	Ig-like C2-type 3.				female pregnancy	extracellular region				ovary(1)|skin(1)	2		Prostate(69;0.00899)				GGTAATAGGTGAATGAAGGGT	0.478000													9	282					0	0	1	0	0
LYPD3	27076	broad.mit.edu	37	19	43965792	43965792	+	Missense_Mutation	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr19:43965792G>A	uc002owl.1	-	5	860	c.752C>T	c.(751-753)TCA>TTA	p.S251L	LYPD3_uc002owm.2_3'UTR	NM_014400	NP_055215	O95274	LYPD3_HUMAN	GPI-anchored metastasis-associated protein	251						anchored to plasma membrane				pancreas(1)	1		Prostate(69;0.0153)				AGATGTGGTTGAGGCCACAGT	0.612000													45	176					0	0	1	0	0
ZNF233	353355	broad.mit.edu	37	19	44778242	44778242	+	Missense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr19:44778242G>C	uc002oyz.1	+	5	1556	c.1429G>C	c.(1429-1431)GAG>CAG	p.E477Q	ZNF235_uc002oyx.1_Intron|ZNF235_uc010eji.2_Intron|ZNF233_uc002oyy.1_Missense_Mutation_p.E292Q	NM_181756	NP_861421	A6NK53	ZN233_HUMAN	zinc finger protein 233	477					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(2)	2		Prostate(69;0.0435)|all_neural(266;0.226)				CCACACTGGAGAGAAACCCTA	0.448000													16	71					0	0	1	0	0
PVRL2	5819	broad.mit.edu	37	19	45389236	45389236	+	Silent	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr19:45389236G>A	uc002ozw.1	+	7	1629	c.1239G>A	c.(1237-1239)GCG>GCA	p.A413A		NM_001042724	NP_001036189	Q92692	PVRL2_HUMAN	poliovirus receptor related 2 isoform delta	413	Cytoplasmic (Potential).				adherens junction organization|adhesion to symbiont|cell junction assembly|homophilic cell adhesion|positive regulation of immunoglobulin mediated immune response|positive regulation of mast cell activation|positive regulation of natural killer cell mediated cytotoxicity directed against tumor cell target|susceptibility to natural killer cell mediated cytotoxicity|susceptibility to T cell mediated cytotoxicity|viral envelope fusion with host membrane|virion attachment, binding of host cell surface coreceptor	cell surface|integral to membrane|zonula adherens	cell adhesion molecule binding|coreceptor activity|protein homodimerization activity				0	Lung NSC(12;0.00195)|all_lung(12;0.00522)	Ovarian(192;0.0728)|all_neural(266;0.112)		OV - Ovarian serous cystadenocarcinoma(262;0.0143)		CCCCAAAAGCGAAGCTGGAGG	0.552000													20	128					0	0	1	0	0
MARK4	57787	broad.mit.edu	37	19	45781866	45781866	+	Missense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr19:45781866G>C	uc002pbb.1	+	10	1004	c.999G>C	c.(997-999)AAG>AAC	p.K333N	MARK4_uc002paz.1_Intron|MARK4_uc002pba.1_Missense_Mutation_p.K333N|MARK4_uc002pbc.1_Missense_Mutation_p.K199N			Q96L34	MARK4_HUMAN	RecName: Full=MAP/microtubule affinity-regulating kinase 4;          EC=2.7.11.1; AltName: Full=MAP/microtubule affinity-regulating kinase-like 1;	333	UBA.				microtubule bundle formation|nervous system development|positive regulation of programmed cell death	centrosome|neuron projection	ATP binding|gamma-tubulin binding|microtubule binding|protein serine/threonine kinase activity|tau-protein kinase activity|ubiquitin binding			central_nervous_system(2)|large_intestine(1)	3		all_neural(266;0.224)|Ovarian(192;0.231)		OV - Ovarian serous cystadenocarcinoma(262;0.0102)		GGGACACCAAGAGAATTGGTG	0.343000													3	162					0	0	1	0	0
CKM	1158	broad.mit.edu	37	19	45810052	45810052	+	Missense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr19:45810052C>G	uc002pbd.2	-	8	1176	c.1102G>C	c.(1102-1104)GAG>CAG	p.E368Q		NM_001824	NP_001815	P06732	KCRM_HUMAN	muscle creatine kinase	368					creatine metabolic process	cytosol	ATP binding|creatine kinase activity			skin(1)	1		Ovarian(192;0.0336)|all_neural(266;0.112)		OV - Ovarian serous cystadenocarcinoma(262;2.29e-44)|Epithelial(262;1.05e-38)|GBM - Glioblastoma multiforme(486;3.56e-07)	Creatine(DB00148)	TGGCCTTTCTCCAACTTCTTC	0.607000													4	288					0	0	1	0	0
QPCTL	54814	broad.mit.edu	37	19	46198872	46198873	+	Missense_Mutation	DNP	GG	AT	AT			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr19:46198872_46198873GG>AT	uc010xxr.1	+	3	750_751	c.529_530GG>AT	c.(529-531)GGA>ATA	p.G177I	QPCTL_uc010ekn.2_Intron	NM_017659	NP_060129	Q9NXS2	QPCTL_HUMAN	glutaminyl-peptide cyclotransferase-like isoform	177				Missing (in Ref. 4; AAH11553).	peptidyl-pyroglutamic acid biosynthetic process, using glutaminyl-peptide cyclotransferase|proteolysis	Golgi membrane|integral to membrane	acyltransferase activity|glutaminyl-peptide cyclotransferase activity|peptidase activity|protein binding|zinc ion binding			skin(1)	1		Ovarian(192;0.051)|all_neural(266;0.112)		OV - Ovarian serous cystadenocarcinoma(262;0.0059)|GBM - Glioblastoma multiforme(486;0.0882)|Epithelial(262;0.208)		CTTCCCACCCGGATCGACCCCC	0.624000													29	76					0	0	1	0	0
FBXO46	23403	broad.mit.edu	37	19	46215971	46215971	+	Silent	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr19:46215971G>A	uc002pcy.2	-	2	908	c.783C>T	c.(781-783)ATC>ATT	p.I261I	FBXO46_uc002pcz.2_Silent_p.I261I	NM_001080469	NP_001073938	Q6PJ61	FBX46_HUMAN	F-box protein 46	261							protein binding			ovary(1)|lung(1)|breast(1)	3		Ovarian(192;0.179)|all_neural(266;0.224)		OV - Ovarian serous cystadenocarcinoma(262;0.00568)|GBM - Glioblastoma multiforme(486;0.0844)|Epithelial(262;0.201)		TGCGGAAGGCGATGCGCACCT	0.731000													15	34					0	0	1	0	0
CALM3	808	broad.mit.edu	37	19	47109107	47109107	+	Missense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr19:47109107G>C	uc002pew.2	+	2	207	c.27G>C	c.(25-27)CAG>CAC	p.Q9H	CALM3_uc010ekp.2_5'UTR|CALM3_uc010xyc.1_Missense_Mutation_p.Q9H	NM_005184	NP_005175	P62158	CALM_HUMAN	calmodulin 3	9	EF-hand 1.				activation of phospholipase C activity|G-protein coupled receptor protein signaling pathway|glucose metabolic process|glycogen catabolic process|muscle contraction|negative regulation of ryanodine-sensitive calcium-release channel activity|nerve growth factor receptor signaling pathway|nitric oxide metabolic process|platelet activation|platelet degranulation|positive regulation of ryanodine-sensitive calcium-release channel activity|regulation of cytokinesis|regulation of nitric-oxide synthase activity|regulation of release of sequestered calcium ion into cytosol by sarcoplasmic reticulum|response to calcium ion|synaptic transmission	centrosome|cytosol|extracellular region|nucleoplasm|plasma membrane|spindle microtubule|spindle pole	calcium ion binding|N-terminal myristoylation domain binding|phospholipase binding|protein domain specific binding|thioesterase binding|titin binding			ovary(1)	1		Ovarian(192;0.0129)|all_neural(266;0.0459)|Breast(70;0.212)		OV - Ovarian serous cystadenocarcinoma(262;0.000338)|all cancers(93;0.000683)|Epithelial(262;0.0181)|GBM - Glioblastoma multiforme(486;0.0341)	Aprindine(DB01429)|Bepridil(DB01244)|Dibucaine(DB00527)|Felodipine(DB01023)|Flunarizine(DB04841)|Fluphenazine(DB00623)|Isoflurane(DB00753)|Loperamide(DB00836)|Miconazole(DB01110)|Perphenazine(DB00850)|Phenoxybenzamine(DB00925)|Pimozide(DB01100)|Promethazine(DB01069)	CTGAGGAGCAGATTGCAGGTG	0.552000													26	81					0	0	1	0	0
GPR77	27202	broad.mit.edu	37	19	47844652	47844652	+	Missense_Mutation	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr19:47844652C>T	uc010ela.1	+	2	814	c.596C>T	c.(595-597)GCG>GTG	p.A199V	GPR77_uc002pgk.1_Missense_Mutation_p.A199V	NM_018485	NP_060955	Q9P296	C5ARL_HUMAN	G protein-coupled receptor 77	199	Extracellular (Potential).				chemotaxis	integral to membrane|plasma membrane	C5a anaphylatoxin receptor activity			ovary(1)	1		all_cancers(25;1.72e-06)|all_lung(116;2.15e-05)|all_epithelial(76;3.44e-05)|Lung NSC(112;3.77e-05)|all_neural(266;0.0652)|Ovarian(192;0.086)		all cancers(93;0.000129)|OV - Ovarian serous cystadenocarcinoma(262;0.000415)|Epithelial(262;0.0109)|GBM - Glioblastoma multiforme(486;0.0138)		ACCGAGAATGCGGTGACTGCC	0.687000													4	78					0	0	1	0	0
DHX34	9704	broad.mit.edu	37	19	47883165	47883165	+	Missense_Mutation	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr19:47883165G>A	uc010xyn.1	+	14	3246	c.2905G>A	c.(2905-2907)GAG>AAG	p.E969K	DHX34_uc010xyo.1_Missense_Mutation_p.E98K	NM_014681	NP_055496	Q14147	DHX34_HUMAN	DEAH (Asp-Glu-Ala-His) box polypeptide 34	969						intracellular	ATP binding|ATP-dependent helicase activity|RNA binding|zinc ion binding			ovary(4)|upper_aerodigestive_tract(1)	5		all_cancers(25;1.65e-09)|all_epithelial(76;9.95e-08)|all_lung(116;7.27e-07)|Lung NSC(112;1.6e-06)|Ovarian(192;0.0139)|all_neural(266;0.026)|Breast(70;0.0503)		all cancers(93;7.16e-05)|OV - Ovarian serous cystadenocarcinoma(262;0.000489)|GBM - Glioblastoma multiforme(486;0.00413)|Epithelial(262;0.0132)		GCTGGAGGAGGAGGAGGAGGA	0.672000													17	41					0	0	1	0	0
LIG1	3978	broad.mit.edu	37	19	48653381	48653381	+	Missense_Mutation	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr19:48653381G>A	uc002pia.1	-	8	781	c.661C>T	c.(661-663)CCC>TCC	p.P221S	LIG1_uc010xze.1_5'UTR|LIG1_uc002phz.1_RNA|LIG1_uc002pib.1_RNA|LIG1_uc010xzf.1_Missense_Mutation_p.P153S|LIG1_uc010xzg.1_Missense_Mutation_p.P190S|LIG1_uc010xzh.1_RNA	NM_000234	NP_000225	P18858	DNLI1_HUMAN	DNA ligase I	221					anatomical structure morphogenesis|base-excision repair|cell division|DNA ligation involved in DNA repair|DNA strand elongation involved in DNA replication|double-strand break repair via homologous recombination|nucleotide-excision repair, DNA gap filling|S phase of mitotic cell cycle|telomere maintenance via recombination|telomere maintenance via semi-conservative replication|transcription-coupled nucleotide-excision repair	nucleoplasm	ATP binding|DNA binding|DNA ligase (ATP) activity|metal ion binding			large_intestine(2)|lung(1)	3		all_epithelial(76;3.1e-06)|all_lung(116;4.39e-06)|Lung NSC(112;8.96e-06)|all_neural(266;0.0189)|Ovarian(192;0.0261)|Breast(70;0.203)		OV - Ovarian serous cystadenocarcinoma(262;8.45e-05)|all cancers(93;0.000423)|Epithelial(262;0.0177)|GBM - Glioblastoma multiforme(486;0.0329)	Bleomycin(DB00290)	GCTCTGCGGGGAGGCTTGGTC	0.612000								NER					21	79					0	0	1	0	0
CCDC114	93233	broad.mit.edu	37	19	48800518	48800518	+	Silent	SNP	G	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr19:48800518G>T	uc002pir.2	-	14	2411	c.1728C>A	c.(1726-1728)ATC>ATA	p.I576I	CCDC114_uc002piq.2_Silent_p.I385I|CCDC114_uc002pio.2_3'UTR	NM_144577	NP_653178	Q96M63	CC114_HUMAN	coiled-coil domain containing 114 isoform 2	576										ovary(1)	1		all_epithelial(76;9.64e-05)|all_lung(116;0.000147)|Lung NSC(112;0.000251)|Prostate(7;0.0187)|all_neural(266;0.0228)|Ovarian(192;0.113)		OV - Ovarian serous cystadenocarcinoma(262;0.000134)|all cancers(93;0.000162)|Epithelial(262;0.0134)|GBM - Glioblastoma multiforme(486;0.0143)		CACCGTGCGTGATGTGGCTGG	0.627000													4	62					0.00909568	0.0091621	1	1	0
KCNJ14	3770	broad.mit.edu	37	19	48967909	48967909	+	Missense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr19:48967909C>G	uc002pje.1	+	3	1591	c.1186C>G	c.(1186-1188)CTG>GTG	p.L396V	KCNJ14_uc002pjf.1_Missense_Mutation_p.L396V	NM_013348	NP_037480	Q9UNX9	IRK14_HUMAN	potassium inwardly-rectifying channel J14	396	Cytoplasmic (By similarity).					voltage-gated potassium channel complex	inward rectifier potassium channel activity			skin(1)	1		all_epithelial(76;2.38e-06)|all_lung(116;4.89e-06)|Lung NSC(112;9.34e-06)|all_neural(266;0.0189)|Ovarian(192;0.0261)		OV - Ovarian serous cystadenocarcinoma(262;0.000109)|all cancers(93;0.000129)|Epithelial(262;0.0081)|GBM - Glioblastoma multiforme(486;0.0222)		TGAACTTGCTCTGAGCTGCTG	0.542000													29	95					0	0	1	0	0
SULT2B1	6820	broad.mit.edu	37	19	49100097	49100097	+	Missense_Mutation	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr19:49100097G>A	uc002pjl.2	+	6	828	c.747G>A	c.(745-747)ATG>ATA	p.M249I	SULT2B1_uc002pjm.2_Missense_Mutation_p.M234I	NM_177973	NP_814444	O00204	ST2B1_HUMAN	sulfotransferase family, cytosolic, 2B, member 1	249					3'-phosphoadenosine 5'-phosphosulfate metabolic process|steroid metabolic process|xenobiotic metabolic process	cytosol	alcohol sulfotransferase activity|protein binding|steroid sulfotransferase activity			skin(1)	1		all_epithelial(76;2.38e-06)|all_lung(116;4.89e-06)|Lung NSC(112;9.34e-06)|all_neural(266;0.0189)|Ovarian(192;0.0261)		OV - Ovarian serous cystadenocarcinoma(262;0.000115)|all cancers(93;0.000147)|GBM - Glioblastoma multiforme(486;0.00707)|Epithelial(262;0.0178)		TCAGCGCCATGAAGGCCAACA	0.592000													7	30					0	0	1	0	0
RPL18	6141	broad.mit.edu	37	19	49119188	49119188	+	Missense_Mutation	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr19:49119188C>T	uc002pjq.1	-	6	470	c.437G>A	c.(436-438)CGA>CAA	p.R146Q	FAM83E_uc002pjn.2_5'Flank|RPL18_uc002pjp.1_Missense_Mutation_p.R94Q	NM_000979	NP_000970	Q07020	RL18_HUMAN	ribosomal protein L18	146					endocrine pancreas development|translational elongation|translational termination|viral transcription	cytosolic large ribosomal subunit	RNA binding|structural constituent of ribosome				0		all_epithelial(76;2.38e-06)|all_lung(116;4.89e-06)|Lung NSC(112;9.34e-06)|all_neural(266;0.0189)|Ovarian(192;0.0261)		OV - Ovarian serous cystadenocarcinoma(262;9.89e-05)|all cancers(93;0.00011)|GBM - Glioblastoma multiforme(486;0.0061)|Epithelial(262;0.0154)		GTACACCTCTCGGCCCTTGCG	0.657000													11	34					0	0	1	0	0
SPHK2	56848	broad.mit.edu	37	19	49131293	49131293	+	Silent	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr19:49131293C>T	uc002pjr.2	+	5	1089	c.723C>T	c.(721-723)ATC>ATT	p.I241I	SPHK2_uc010xzt.1_Silent_p.I182I|SPHK2_uc002pjs.2_Silent_p.I241I|SPHK2_uc002pjt.2_Silent_p.I35I|SPHK2_uc002pju.2_Silent_p.I205I|SPHK2_uc002pjv.2_Silent_p.I205I|SPHK2_uc002pjw.2_Silent_p.I303I|SPHK2_uc010xzu.1_Silent_p.I205I	NM_020126	NP_064511	Q9NRA0	SPHK2_HUMAN	sphingosine kinase 2	241	DAGKc.				activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|anti-apoptosis|cell proliferation|sphinganine-1-phosphate biosynthetic process	cytosol|lysosomal membrane|membrane fraction	ATP binding|D-erythro-sphingosine kinase activity|diacylglycerol kinase activity|Ras GTPase binding|sphinganine kinase activity			lung(1)	1		all_lung(116;0.000125)|Lung NSC(112;0.000202)|all_epithelial(76;0.000283)|all_neural(266;0.0506)|Ovarian(192;0.113)		OV - Ovarian serous cystadenocarcinoma(262;0.000102)|all cancers(93;0.000117)|GBM - Glioblastoma multiforme(486;0.00627)|Epithelial(262;0.0158)		GGGATGGCATCGTCACGGTCT	0.652000													27	86					0	0	1	0	0
NUCB1	4924	broad.mit.edu	37	19	49425609	49425609	+	Missense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr19:49425609G>C	uc002plb.3	+	13	1386	c.1314G>C	c.(1312-1314)CAG>CAC	p.Q438H	NUCB1_uc002plc.2_Missense_Mutation_p.Q438H|NUCB1_uc002pld.2_Missense_Mutation_p.Q101H	NM_006184	NP_006175	Q02818	NUCB1_HUMAN	nucleobindin 1 precursor	438						ER-Golgi intermediate compartment|extracellular space|Golgi apparatus|membrane|microtubule cytoskeleton	calcium ion binding|DNA binding				0		all_lung(116;4.89e-05)|Lung NSC(112;8.3e-05)|all_epithelial(76;8.64e-05)|all_neural(266;0.0506)|Ovarian(192;0.113)		OV - Ovarian serous cystadenocarcinoma(262;0.000171)|all cancers(93;0.000333)|Epithelial(262;0.0174)|GBM - Glioblastoma multiforme(486;0.0244)		CCGGTGACCAGAAGGAGGTGG	0.498000													17	114					0	0	1	0	0
FTL	2512	broad.mit.edu	37	19	49469965	49469965	+	Missense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr19:49469965C>G	uc002plo.2	+	4	700	c.501C>G	c.(499-501)TTC>TTG	p.F167L	FTL_uc002pln.1_3'UTR	NM_000146	NP_000137	P02792	FRIL_HUMAN	ferritin, light polypeptide	167					cell death|cellular iron ion homeostasis|cellular membrane organization|iron ion transport|post-Golgi vesicle-mediated transport	cytosol|intracellular ferritin complex	ferric iron binding|identical protein binding|oxidoreductase activity				0		all_epithelial(76;5.29e-07)|all_lung(116;1.7e-06)|Lung NSC(112;3.55e-06)|all_neural(266;0.0189)|Ovarian(192;0.0261)		OV - Ovarian serous cystadenocarcinoma(262;0.000152)|all cancers(93;0.000435)|GBM - Glioblastoma multiforme(486;0.0171)|Epithelial(262;0.0267)	Iron Dextran(DB00893)	AGTATCTCTTCGAAAGGCTCA	0.562000													26	120					0	0	1	0	0
LHB	3972	broad.mit.edu	37	19	49519367	49519367	+	Silent	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr19:49519367C>T	uc002plt.2	-	3	393	c.384G>A	c.(382-384)TTG>TTA	p.L128L		NM_000894	NP_000885	P01229	LSHB_HUMAN	luteinizing hormone beta subunit precursor	128					cell-cell signaling|cellular nitrogen compound metabolic process|male gonad development|peptide hormone processing|progesterone biosynthetic process|signal transduction	extracellular region|soluble fraction	hormone activity				0		all_epithelial(76;9.62e-07)|all_lung(116;1.7e-06)|Lung NSC(112;3.55e-06)|all_neural(266;0.0189)|Ovarian(192;0.0261)		all cancers(93;0.000371)|OV - Ovarian serous cystadenocarcinoma(262;0.000503)|GBM - Glioblastoma multiforme(486;0.00518)|Epithelial(262;0.0427)	Lutropin alfa(DB00044)|Menotropins(DB00032)	GGTCACAGGTCAAGGGGTGGT	0.642000													23	100					0	0	1	0	0
SNRNP70	6625	broad.mit.edu	37	19	49601710	49601710	+	Missense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr19:49601710C>G	uc002pmk.2	+	5	731	c.292C>G	c.(292-294)CAG>GAG	p.Q98E	SNRNP70_uc002pmh.1_RNA|SNRNP70_uc002pmi.1_Missense_Mutation_p.Q98E|SNRNP70_uc002pml.2_5'UTR|SNRNP70_uc002pmm.2_RNA	NM_003089	NP_003080	P08621	RU17_HUMAN	U1 small nuclear ribonucleoprotein 70 kDa	98					nuclear mRNA splicing, via spliceosome|regulation of RNA splicing	nucleoplasm|spliceosomal complex	nucleotide binding|protein binding|RNA binding				0						TCCCAATGCTCAGGGGGATGC	0.527000											OREG0025616	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	53	212					0	0	1	0	0
NOSIP	51070	broad.mit.edu	37	19	50059841	50059841	+	Silent	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr19:50059841C>G	uc002pok.2	-	8	842	c.690G>C	c.(688-690)CTG>CTC	p.L230L	NOSIP_uc002pol.2_Silent_p.L230L	NM_015953	NP_057037	Q9Y314	NOSIP_HUMAN	nitric oxide synthase interacting protein	230					negative regulation of nitric-oxide synthase activity|nitric oxide metabolic process	cytosol|nucleus	protein binding			skin(1)	1		all_lung(116;7.84e-06)|Lung NSC(112;2.8e-05)|all_neural(266;0.0966)|Ovarian(192;0.231)		OV - Ovarian serous cystadenocarcinoma(262;0.00321)|GBM - Glioblastoma multiforme(134;0.0133)		TGGCGTTGCTCAGGCTGTCGC	0.701000													19	58					0	0	1	0	0
SCAF1	58506	broad.mit.edu	37	19	50154543	50154543	+	Silent	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr19:50154543G>A	uc002poq.2	+	7	1021	c.897G>A	c.(895-897)GAG>GAA	p.E299E		NM_021228	NP_067051	Q9H7N4	SFR19_HUMAN	SR-related CTD-associated factor 1	299					mRNA processing|RNA splicing	nucleus	RNA binding				0		all_lung(116;1.05e-05)|Lung NSC(112;3.77e-05)|all_neural(266;0.196)|Ovarian(192;0.231)		OV - Ovarian serous cystadenocarcinoma(262;0.00113)|GBM - Glioblastoma multiforme(134;0.0204)		GCATCTCGGAGACCCTGGCGG	0.468000													9	27					0	0	1	0	0
PNKP	11284	broad.mit.edu	37	19	50369700	50369700	+	Missense_Mutation	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr19:50369700C>T	uc002pqh.2	-	2	206	c.154G>A	c.(154-156)GAG>AAG	p.E52K	PNKP_uc002pqg.2_5'UTR|PNKP_uc002pqi.2_Missense_Mutation_p.E13K|PNKP_uc002pqj.2_Missense_Mutation_p.E52K|PNKP_uc010enm.2_Missense_Mutation_p.E52K|PNKP_uc002pqk.2_Missense_Mutation_p.E52K	NM_007254	NP_009185	Q96T60	PNKP_HUMAN	polynucleotide kinase 3' phosphatase	52					DNA damage response, detection of DNA damage|DNA-dependent DNA replication|nucleotide-excision repair, DNA damage removal|response to oxidative stress|response to radiation	nucleolus	ATP binding|ATP-dependent polydeoxyribonucleotide 5'-hydroxyl-kinase activity|damaged DNA binding|double-stranded DNA binding|endonuclease activity|nucleotide kinase activity|polynucleotide 3'-phosphatase activity|protein binding			ovary(1)|kidney(1)	2		all_lung(116;1.05e-05)|Lung NSC(112;3.77e-05)|all_neural(266;0.107)|Ovarian(192;0.231)		GBM - Glioblastoma multiforme(134;0.0118)|OV - Ovarian serous cystadenocarcinoma(262;0.0134)		GCGACCAGCTCCACTGAGGAT	0.572000								Other_BER_factors					33	169					0	0	1	0	0
VRK3	51231	broad.mit.edu	37	19	50482462	50482462	+	Silent	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr19:50482462G>A	uc002prg.2	-	14	1412	c.1314C>T	c.(1312-1314)CTC>CTT	p.L438L	VRK3_uc002prh.1_Silent_p.L438L|VRK3_uc002pri.1_Silent_p.L388L|VRK3_uc010ens.2_Silent_p.L438L|VRK3_uc010ybl.1_Silent_p.L388L|VRK3_uc010ybm.1_Silent_p.L207L	NM_016440	NP_057524	Q8IV63	VRK3_HUMAN	vaccinia related kinase 3 isoform 1	438	Protein kinase.					nucleus	ATP binding|protein kinase activity			stomach(1)|skin(1)	2		all_neural(266;0.0459)|Ovarian(192;0.0481)		GBM - Glioblastoma multiforme(134;0.00166)|OV - Ovarian serous cystadenocarcinoma(262;0.00652)		CCTCATACGTGAGGGCCATCA	0.587000													21	89					0	0	1	0	0
POLD1	5424	broad.mit.edu	37	19	50906815	50906815	+	Silent	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr19:50906815C>T	uc002psb.3	+	10	1259	c.1203C>T	c.(1201-1203)TTC>TTT	p.F401F	POLD1_uc002psc.3_Silent_p.F401F|POLD1_uc010enx.2_RNA|POLD1_uc010eny.2_Silent_p.F401F	NM_002691	NP_002682	P28340	DPOD1_HUMAN	DNA-directed DNA polymerase delta 1	401					base-excision repair, gap-filling|DNA replication proofreading|DNA replication, removal of RNA primer|DNA synthesis involved in DNA repair|nucleotide-excision repair, DNA gap filling|regulation of mitotic cell cycle|response to UV|S phase of mitotic cell cycle|telomere maintenance via recombination|telomere maintenance via semi-conservative replication|transcription-coupled nucleotide-excision repair	delta DNA polymerase complex|nucleoplasm|nucleotide-excision repair complex	3'-5'-exodeoxyribonuclease activity|chromatin binding|DNA binding|DNA-directed DNA polymerase activity|metal ion binding|nucleotide binding|protein binding			upper_aerodigestive_tract(1)|central_nervous_system(1)	2		all_neural(266;0.0571)		OV - Ovarian serous cystadenocarcinoma(262;0.00794)|GBM - Glioblastoma multiforme(134;0.0195)		TCCAGAACTTCGACCTTCCGT	0.627000								DNA_polymerases_(catalytic_subunits)					38	157					0	0	1	0	0
MYBPC2	4606	broad.mit.edu	37	19	50957566	50957566	+	Missense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr19:50957566G>C	uc002psf.2	+	18	2005	c.1954G>C	c.(1954-1956)GAG>CAG	p.E652Q		NM_004533	NP_004524	Q14324	MYPC2_HUMAN	myosin binding protein C, fast type	652	Fibronectin type-III 1.				cell adhesion|muscle filament sliding	cytosol|myosin filament	actin binding|structural constituent of muscle			breast(1)	1		all_neural(266;0.057)		OV - Ovarian serous cystadenocarcinoma(262;0.0079)|GBM - Glioblastoma multiforme(134;0.0144)		CTCGGTTGGAGAGGATTGGGC	0.632000													14	65					0	0	1	0	0
MYBPC2	4606	broad.mit.edu	37	19	50962466	50962466	+	Silent	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr19:50962466C>T	uc002psf.2	+	23	2745	c.2694C>T	c.(2692-2694)TTC>TTT	p.F898F		NM_004533	NP_004524	Q14324	MYPC2_HUMAN	myosin binding protein C, fast type	898	Ig-like C2-type 6.				cell adhesion|muscle filament sliding	cytosol|myosin filament	actin binding|structural constituent of muscle			breast(1)	1		all_neural(266;0.057)		OV - Ovarian serous cystadenocarcinoma(262;0.0079)|GBM - Glioblastoma multiforme(134;0.0144)		CCGTGTTCTTCGTGCGCCAGG	0.687000													6	13					0	0	1	0	0
MIR518B	574474	broad.mit.edu	37	19	54206023	54206023	+	RNA	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr19:54206023C>G	hsa-mir-518b|MI0003156	+			c.33C>G																				0						GAAGCGCTTTCTGTTGTCTGA	0.438000													15	46					0	0	1	0	0
LILRB4	11006	broad.mit.edu	37	19	55176613	55176613	+	Missense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr19:55176613G>C	uc002qgp.2	+	6	1101	c.739G>C	c.(739-741)GGG>CGG	p.G247R	LILRB4_uc002qgq.2_Missense_Mutation_p.G247R|LILRB4_uc010ers.1_3'UTR|LILRB4_uc002qgr.2_Missense_Mutation_p.G288R|LILRB4_uc010ert.2_Missense_Mutation_p.G288R|LILRB4_uc010eru.2_Missense_Mutation_p.G276R	NM_006847	NP_006838	Q8NHJ6	LIRB4_HUMAN	leukocyte immunoglobulin-like receptor,	247	Extracellular (Potential).					integral to membrane|plasma membrane	antigen binding|receptor activity			ovary(3)	3				GBM - Glioblastoma multiforme(193;0.035)		CATGCCTACAGGGTCAGTCCC	0.413000													5	19					0	0	1	0	0
NLRP7	199713	broad.mit.edu	37	19	55451669	55451669	+	Missense_Mutation	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr19:55451669G>A	uc002qih.3	-	4	594	c.518C>T	c.(517-519)ACG>ATG	p.T173M	NLRP7_uc002qig.3_Missense_Mutation_p.T173M|NLRP7_uc002qii.3_Missense_Mutation_p.T173M|NLRP7_uc010esk.2_Missense_Mutation_p.T173M|NLRP7_uc010esl.2_Missense_Mutation_p.T201M	NM_206828	NP_996611	Q8WX94	NALP7_HUMAN	NACHT, leucine rich repeat and PYD containing 7	173	NACHT.						ATP binding			large_intestine(1)|breast(1)|central_nervous_system(1)	3				GBM - Glioblastoma multiforme(193;0.0325)		CAGCACCACCGTGTAAGGTGT	0.537000													45	152					0	0	1	0	0
NLRP9	338321	broad.mit.edu	37	19	56223837	56223837	+	Missense_Mutation	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr19:56223837C>T	uc002qly.2	-	7	2649	c.2621G>A	c.(2620-2622)AGA>AAA	p.R874K		NM_176820	NP_789790	Q7RTR0	NALP9_HUMAN	NLR family, pyrin domain containing 9	874	LRR 5.					cytoplasm	ATP binding			skin(4)|ovary(2)|breast(1)	7		Colorectal(82;0.000133)|Ovarian(87;0.133)		GBM - Glioblastoma multiforme(193;0.123)		ACATAACTGTCTGACACCAGT	0.413000													17	68					0	0	1	0	0
NLRP13	126204	broad.mit.edu	37	19	56424546	56424546	+	Missense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr19:56424546C>G	uc010ygg.1	-	5	662	c.637G>C	c.(637-639)GAG>CAG	p.E213Q		NM_176810	NP_789780	Q86W25	NAL13_HUMAN	NACHT, leucine rich repeat and PYD containing	213							ATP binding			skin(4)|ovary(3)|pancreas(1)|lung(1)	9		Colorectal(82;3.48e-05)|Ovarian(87;0.0481)|Renal(1328;0.218)		GBM - Glioblastoma multiforme(193;0.0642)		TGCAGTTCCTCATGTTCGTCC	0.502000													9	277					0	0	1	0	0
ZNF814	730051	broad.mit.edu	37	19	58385050	58385050	+	Missense_Mutation	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr19:58385050G>A	uc002qqo.2	-	3	1980	c.1708C>T	c.(1708-1710)CAC>TAC	p.H570Y	ZNF814_uc002qqk.2_Intron|ZNF814_uc010yhl.1_Intron	NM_001144989	NP_001138461	B7Z6K7	ZN814_HUMAN	zinc finger protein 814	570	C2H2-type 13.				regulation of transcription, DNA-dependent	intracellular	nucleic acid binding|zinc ion binding				0						TCTCTAGGGTGAACTCGCTGA	0.468000													6	32					0	0	1	0	0
ZNF418	147686	broad.mit.edu	37	19	58438814	58438814	+	Silent	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr19:58438814G>A	uc002qqs.1	-	4	1027	c.735C>T	c.(733-735)GTC>GTT	p.V245V	ZNF418_uc010yhn.1_RNA|ZNF418_uc010yho.1_Silent_p.V160V	NM_133460	NP_597717	Q8TF45	ZN418_HUMAN	zinc finger protein 418	245	C2H2-type 2.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Colorectal(82;0.000256)|all_neural(62;0.0577)|Breast(46;0.147)|Ovarian(87;0.156)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0158)		GATGATTACTGACGCTATCAT	0.428000													34	102					0	0	1	0	0
ZSCAN1	284312	broad.mit.edu	37	19	58565155	58565155	+	Silent	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr19:58565155G>A	uc002qrc.1	+	6	1210	c.963G>A	c.(961-963)CCG>CCA	p.P321P		NM_182572	NP_872378	Q8NBB4	ZSCA1_HUMAN	zinc finger and SCAN domain containing 1	321	C2H2-type 2.				viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(2)	2		Colorectal(82;5.46e-05)|all_neural(62;0.0182)|Breast(46;0.0389)|Ovarian(87;0.0443)|Renal(1328;0.157)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0152)		GGCCCTTTCCGTGCCCCGAGT	0.627000													34	97					0	0	1	0	0
RPS5	6193	broad.mit.edu	37	19	58906057	58906057	+	Silent	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr19:58906057G>A	uc002qsn.2	+	6	627	c.555G>A	c.(553-555)TCG>TCA	p.S185S	RPS5_uc002qso.2_Silent_p.S185S	NM_001009	NP_001000	P46782	RS5_HUMAN	ribosomal protein S5	185					endocrine pancreas development|regulation of translational fidelity|translational elongation|translational termination|viral transcription	cytosolic small ribosomal subunit	mRNA binding|structural constituent of ribosome				0		all_cancers(17;1.71e-22)|all_epithelial(17;1.69e-16)|Lung NSC(17;2.25e-06)|all_lung(17;9.97e-06)|Colorectal(82;3.46e-05)|Renal(17;0.00179)|all_neural(62;0.00607)|Breast(46;0.0194)|Ovarian(87;0.0443)|Medulloblastoma(540;0.184)		UCEC - Uterine corpus endometrioid carcinoma (67;0.171)|GBM - Glioblastoma multiforme(193;0.0323)|Lung(386;0.0543)|LUSC - Lung squamous cell carcinoma(496;0.176)		AGGGCTCCTCGAACTCCTATG	0.562000													51	173					0	0	1	0	0
PXDN	7837	broad.mit.edu	37	2	1653335	1653335	+	Silent	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr2:1653335C>T	uc002qxa.2	-	17	2281	c.2217G>A	c.(2215-2217)CAG>CAA	p.Q739Q		NM_012293	NP_036425	Q92626	PXDN_HUMAN	peroxidasin precursor	739					extracellular matrix organization|hydrogen peroxide catabolic process|immune response	endoplasmic reticulum|extracellular space|proteinaceous extracellular matrix	extracellular matrix structural constituent|heme binding|interleukin-1 receptor antagonist activity|peroxidase activity			pancreas(6)|ovary(2)	8	Acute lymphoblastic leukemia(172;0.0627)|all_hematologic(175;0.0797)	all_cancers(51;0.0845)|Lung NSC(108;0.00641)|all_epithelial(98;0.00716)		all cancers(51;0.0492)|OV - Ovarian serous cystadenocarcinoma(76;0.0973)|Epithelial(75;0.17)|GBM - Glioblastoma multiforme(21;0.228)		TCCGGTACTTCTGGTGGAAGC	0.617000													42	131					0	0	1	0	0
PXDN	7837	broad.mit.edu	37	2	1677580	1677580	+	Missense_Mutation	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr2:1677580C>T	uc002qxa.2	-	9	917	c.853G>A	c.(853-855)GAG>AAG	p.E285K	PXDN_uc002qxb.1_Missense_Mutation_p.E285K|PXDN_uc002qxc.1_Missense_Mutation_p.E102K	NM_012293	NP_036425	Q92626	PXDN_HUMAN	peroxidasin precursor	285	Ig-like C2-type 1.				extracellular matrix organization|hydrogen peroxide catabolic process|immune response	endoplasmic reticulum|extracellular space|proteinaceous extracellular matrix	extracellular matrix structural constituent|heme binding|interleukin-1 receptor antagonist activity|peroxidase activity			pancreas(6)|ovary(2)	8	Acute lymphoblastic leukemia(172;0.0627)|all_hematologic(175;0.0797)	all_cancers(51;0.0845)|Lung NSC(108;0.00641)|all_epithelial(98;0.00716)		all cancers(51;0.0492)|OV - Ovarian serous cystadenocarcinoma(76;0.0973)|Epithelial(75;0.17)|GBM - Glioblastoma multiforme(21;0.228)		ATGCTCAGCTCATTACTACAA	0.512000													21	75					0	0	1	0	0
SOX11	6664	broad.mit.edu	37	2	5832886	5832886	+	Missense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr2:5832886G>C	uc002qyj.2	+	1	88	c.33G>C	c.(31-33)GAG>GAC	p.E11D		NM_003108	NP_003099	P35716	SOX11_HUMAN	SRY-box 11	11					cardiac ventricle formation|closure of optic fissure|cornea development in camera-type eye|embryonic digestive tract morphogenesis|embryonic skeletal system morphogenesis|eyelid development in camera-type eye|glial cell proliferation|hard palate development|lens morphogenesis in camera-type eye|limb bud formation|lung morphogenesis|negative regulation of cell death|negative regulation of glial cell proliferation|negative regulation of lymphocyte proliferation|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transcription regulatory region DNA binding|neural crest cell development|neural tube formation|neuroepithelial cell differentiation|noradrenergic neuron differentiation|outflow tract morphogenesis|positive regulation of BMP signaling pathway|positive regulation of hippo signaling cascade|positive regulation of hormone secretion|positive regulation of neurogenesis|positive regulation of neuron differentiation|positive regulation of ossification|positive regulation of osteoblast differentiation|positive regulation of stem cell proliferation|regulation of transforming growth factor beta receptor signaling pathway|signal transduction involved in G1/S transition checkpoint|soft palate development|somite development|spinal cord development|sympathetic nervous system development|ventricular septum morphogenesis	cytoplasm|nucleolus	enhancer sequence-specific DNA binding|RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription|RNA polymerase II transcription coactivator activity|translation factor activity, nucleic acid binding			central_nervous_system(3)	3	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.191)			OV - Ovarian serous cystadenocarcinoma(76;0.132)		TGGAAGCGGAGAGCAACCTGC	0.697000													4	22					0	0	1	0	0
ADAM17	6868	broad.mit.edu	37	2	9645420	9645420	+	Silent	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr2:9645420G>A	uc002qzu.2	-	12	1602	c.1419C>T	c.(1417-1419)CGC>CGT	p.R473R	ADAM17_uc010ewy.2_Silent_p.R473R|ADAM17_uc010ewz.2_Intron	NM_003183	NP_003174	P78536	ADA17_HUMAN	a disintegrin and metalloprotease domain 17	473	Peptidase M12B.|Extracellular (Potential).				B cell differentiation|cell adhesion mediated by integrin|epidermal growth factor receptor signaling pathway|epidermal growth factor receptor transactivation by G-protein coupled receptor signaling pathway|germinal center formation|membrane protein intracellular domain proteolysis|negative regulation of interleukin-8 production|nerve growth factor receptor signaling pathway|Notch signaling pathway|PMA-inducible membrane protein ectodomain proteolysis|positive regulation of cell growth|positive regulation of cell proliferation|positive regulation of chemokine production|positive regulation of cyclin-dependent protein kinase activity involved in G1/S|positive regulation of protein phosphorylation|positive regulation of T cell chemotaxis|positive regulation of transforming growth factor beta receptor signaling pathway|regulation of mast cell apoptosis|response to drug|response to high density lipoprotein particle stimulus|response to hypoxia|response to lipopolysaccharide|spleen development|T cell differentiation in thymus|wound healing, spreading of epidermal cells	actin cytoskeleton|apical plasma membrane|cell surface|cytoplasm|integral to plasma membrane|membrane raft	integrin binding|interleukin-6 receptor binding|metalloendopeptidase activity|PDZ domain binding|SH3 domain binding|zinc ion binding			lung(1)|kidney(1)	2	all_hematologic(175;0.127)|Acute lymphoblastic leukemia(172;0.155)			Epithelial(75;0.225)		CTTTATTGCTGCGTTCTTGAA	0.433000													32	85					0	0	1	0	0
ADAM17	6868	broad.mit.edu	37	2	9645487	9645487	+	Missense_Mutation	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr2:9645487G>A	uc002qzu.2	-	12	1535	c.1352C>T	c.(1351-1353)TCA>TTA	p.S451L	ADAM17_uc010ewy.2_Missense_Mutation_p.S451L|ADAM17_uc010ewz.2_Intron	NM_003183	NP_003174	P78536	ADA17_HUMAN	a disintegrin and metalloprotease domain 17	451	Peptidase M12B.|Extracellular (Potential).				B cell differentiation|cell adhesion mediated by integrin|epidermal growth factor receptor signaling pathway|epidermal growth factor receptor transactivation by G-protein coupled receptor signaling pathway|germinal center formation|membrane protein intracellular domain proteolysis|negative regulation of interleukin-8 production|nerve growth factor receptor signaling pathway|Notch signaling pathway|PMA-inducible membrane protein ectodomain proteolysis|positive regulation of cell growth|positive regulation of cell proliferation|positive regulation of chemokine production|positive regulation of cyclin-dependent protein kinase activity involved in G1/S|positive regulation of protein phosphorylation|positive regulation of T cell chemotaxis|positive regulation of transforming growth factor beta receptor signaling pathway|regulation of mast cell apoptosis|response to drug|response to high density lipoprotein particle stimulus|response to hypoxia|response to lipopolysaccharide|spleen development|T cell differentiation in thymus|wound healing, spreading of epidermal cells	actin cytoskeleton|apical plasma membrane|cell surface|cytoplasm|integral to plasma membrane|membrane raft	integrin binding|interleukin-6 receptor binding|metalloendopeptidase activity|PDZ domain binding|SH3 domain binding|zinc ion binding			lung(1)|kidney(1)	2	all_hematologic(175;0.127)|Acute lymphoblastic leukemia(172;0.155)			Epithelial(75;0.225)		ACTGCAGTTTGAAAACATCTT	0.363000													7	75					0	0	1	0	0
ROCK2	9475	broad.mit.edu	37	2	11341440	11341440	+	Missense_Mutation	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr2:11341440C>T	uc002rbd.1	-	22	3168	c.2719G>A	c.(2719-2721)GAA>AAA	p.E907K		NM_004850	NP_004841	O75116	ROCK2_HUMAN	Rho-associated, coiled-coil containing protein	907	Potential.				axon guidance|cytokinesis|intracellular signal transduction	cytosol|plasma membrane	ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity|structural molecule activity			stomach(2)|skin(2)	4	all_hematologic(175;0.127)|Acute lymphoblastic leukemia(172;0.155)			Epithelial(75;0.137)|OV - Ovarian serous cystadenocarcinoma(76;0.162)		ACTTACCGTTCATCCTGTAAT	0.204000													11	54					0	0	1	0	0
E2F6	1876	broad.mit.edu	37	2	11587768	11587768	+	Missense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr2:11587768C>G	uc002rbh.2	-	6	1076	c.784G>C	c.(784-786)GAA>CAA	p.E262Q	E2F6_uc002rbe.2_Missense_Mutation_p.E187Q|E2F6_uc002rbf.2_Missense_Mutation_p.E230Q|E2F6_uc002rbg.2_Missense_Mutation_p.E187Q|E2F6_uc002rbi.2_Missense_Mutation_p.E187Q|E2F6_uc010yjl.1_RNA	NM_198256	NP_937987	O75461	E2F6_HUMAN	E2F transcription factor 6	262	Transcription repression.				negative regulation of transcription from RNA polymerase II promoter	MLL1 complex|transcription factor complex	DNA binding|transcription corepressor activity			skin(1)	1	all_hematologic(175;0.127)|Acute lymphoblastic leukemia(172;0.155)			Epithelial(75;0.114)|OV - Ovarian serous cystadenocarcinoma(76;0.168)		TCAGGGCCTTCTGGATGAGTG	0.403000													5	213					0	0	1	0	0
LPIN1	23175	broad.mit.edu	37	2	11964764	11964764	+	Silent	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr2:11964764G>A	uc010yjn.1	+	21	2794	c.2520G>A	c.(2518-2520)GTG>GTA	p.V840V	LPIN1_uc010yjm.1_Silent_p.V925V|LPIN1_uc002rbt.2_Silent_p.V840V|LPIN1_uc010yjo.1_Silent_p.V341V	NM_145693	NP_663731	Q14693	LPIN1_HUMAN	lipin 1	840					fatty acid catabolic process|transcription, DNA-dependent|triglyceride biosynthetic process|triglyceride mobilization	cytosol|endoplasmic reticulum membrane	phosphatidate phosphatase activity			ovary(2)|large_intestine(1)|skin(1)	4	all_hematologic(175;0.127)|Acute lymphoblastic leukemia(172;0.155)			Epithelial(75;0.11)|OV - Ovarian serous cystadenocarcinoma(76;0.173)		CCAGGTATGTGAGACTCTGTG	0.483000													22	54					0	0	1	0	0
APOB	338	broad.mit.edu	37	2	21228336	21228336	+	Missense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr2:21228336G>C	uc002red.2	-	26	11532	c.11404C>G	c.(11404-11406)CAA>GAA	p.Q3802E		NM_000384	NP_000375	P04114	APOB_HUMAN	apolipoprotein B precursor	3802					cholesterol homeostasis|cholesterol metabolic process|leukocyte migration|low-density lipoprotein particle clearance|low-density lipoprotein particle remodeling|platelet activation|positive regulation of cholesterol storage|positive regulation of macrophage derived foam cell differentiation|receptor-mediated endocytosis|response to virus	chylomicron remnant|clathrin-coated endocytic vesicle membrane|endoplasmic reticulum lumen|endoplasmic reticulum membrane|endosome lumen|endosome membrane|intermediate-density lipoprotein particle|low-density lipoprotein particle|mature chylomicron|microsome|plasma membrane|very-low-density lipoprotein particle	cholesterol transporter activity|enzyme binding|heparin binding|low-density lipoprotein particle receptor binding|phospholipid binding|protein heterodimerization activity			ovary(11)|skin(9)|central_nervous_system(3)|large_intestine(2)|upper_aerodigestive_tract(1)|pancreas(1)	27	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				Atorvastatin(DB01076)	TCTTCTGGTTGAGAATATTTT	0.408000													54	178					0	0	1	0	0
APOB	338	broad.mit.edu	37	2	21241867	21241867	+	Missense_Mutation	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr2:21241867C>T	uc002red.2	-	20	3246	c.3118G>A	c.(3118-3120)GAA>AAA	p.E1040K		NM_000384	NP_000375	P04114	APOB_HUMAN	apolipoprotein B precursor	1040					cholesterol homeostasis|cholesterol metabolic process|leukocyte migration|low-density lipoprotein particle clearance|low-density lipoprotein particle remodeling|platelet activation|positive regulation of cholesterol storage|positive regulation of macrophage derived foam cell differentiation|receptor-mediated endocytosis|response to virus	chylomicron remnant|clathrin-coated endocytic vesicle membrane|endoplasmic reticulum lumen|endoplasmic reticulum membrane|endosome lumen|endosome membrane|intermediate-density lipoprotein particle|low-density lipoprotein particle|mature chylomicron|microsome|plasma membrane|very-low-density lipoprotein particle	cholesterol transporter activity|enzyme binding|heparin binding|low-density lipoprotein particle receptor binding|phospholipid binding|protein heterodimerization activity			ovary(11)|skin(9)|central_nervous_system(3)|large_intestine(2)|upper_aerodigestive_tract(1)|pancreas(1)	27	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				Atorvastatin(DB01076)	TACTCACCTTCTGCTTGAGTT	0.438000													22	48					0	0	1	0	0
APOB	338	broad.mit.edu	37	2	21246522	21246522	+	Missense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr2:21246522G>C	uc002red.2	-	17	2607	c.2479C>G	c.(2479-2481)CTT>GTT	p.L827V		NM_000384	NP_000375	P04114	APOB_HUMAN	apolipoprotein B precursor	827					cholesterol homeostasis|cholesterol metabolic process|leukocyte migration|low-density lipoprotein particle clearance|low-density lipoprotein particle remodeling|platelet activation|positive regulation of cholesterol storage|positive regulation of macrophage derived foam cell differentiation|receptor-mediated endocytosis|response to virus	chylomicron remnant|clathrin-coated endocytic vesicle membrane|endoplasmic reticulum lumen|endoplasmic reticulum membrane|endosome lumen|endosome membrane|intermediate-density lipoprotein particle|low-density lipoprotein particle|mature chylomicron|microsome|plasma membrane|very-low-density lipoprotein particle	cholesterol transporter activity|enzyme binding|heparin binding|low-density lipoprotein particle receptor binding|phospholipid binding|protein heterodimerization activity			ovary(11)|skin(9)|central_nervous_system(3)|large_intestine(2)|upper_aerodigestive_tract(1)|pancreas(1)	27	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				Atorvastatin(DB01076)	ATGTAGTGAAGAAAAAAGTCA	0.433000													16	67					0	0	1	0	0
ITSN2	50618	broad.mit.edu	37	2	24471720	24471720	+	Missense_Mutation	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr2:24471720G>A	uc002rfe.2	-	26	3410	c.3152C>T	c.(3151-3153)TCA>TTA	p.S1051L	ITSN2_uc002rff.2_Missense_Mutation_p.S1024L|ITSN2_uc002rfg.2_Missense_Mutation_p.S1051L|ITSN2_uc002rfh.1_RNA	NM_006277	NP_006268	Q9NZM3	ITSN2_HUMAN	intersectin 2 isoform 1	1051					endocytosis|regulation of Rho protein signal transduction	cytoplasm	calcium ion binding|Rho guanyl-nucleotide exchange factor activity|SH3/SH2 adaptor activity			kidney(2)|ovary(1)|central_nervous_system(1)	4	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					TTTTTTATTTGATGCTCCAGA	0.328000													17	122					0	0	1	0	0
NCOA1	8648	broad.mit.edu	37	2	24905877	24905877	+	Missense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr2:24905877G>C	uc002rfk.2	+	6	670	c.412G>C	c.(412-414)GAG>CAG	p.E138Q	NCOA1_uc010eye.2_Missense_Mutation_p.E138Q|NCOA1_uc002rfi.2_5'UTR|NCOA1_uc002rfj.2_Missense_Mutation_p.E138Q|NCOA1_uc002rfl.2_Missense_Mutation_p.E138Q	NM_003743	NP_003734	Q15788	NCOA1_HUMAN	nuclear receptor coactivator 1 isoform 1	138	PAS.								PAX3/NCOA1(8)	soft_tissue(8)|ovary(1)|lung(1)|skin(1)	11	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					ATTTGTGTCAGAGAATGTAAC	0.388000			T	PAX3	alveolar rhadomyosarcoma								4	142					0	0	1	0	0
DNMT3A	1788	broad.mit.edu	37	2	25505330	25505330	+	Missense_Mutation	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr2:25505330C>T	uc002rgc.2	-	4	685	c.428G>A	c.(427-429)CGA>CAA	p.R143Q	DNMT3A_uc002rgd.2_Missense_Mutation_p.R143Q|DNMT3A_uc010eyi.2_RNA|DNMT3A_uc002rge.2_Missense_Mutation_p.R140Q|DNMT3A_uc002rgf.2_Missense_Mutation_p.R143Q	NM_022552	NP_072046	Q9Y6K1	DNM3A_HUMAN	DNA cytosine methyltransferase 3 alpha isoform	143					regulation of gene expression by genetic imprinting	cytoplasm|euchromatin|nuclear matrix	DNA (cytosine-5-)-methyltransferase activity|DNA binding|metal ion binding|protein binding			haematopoietic_and_lymphoid_tissue(133)|lung(4)|ovary(3)	140	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					AGGGGCTCCTCGGCCCTCCTT	0.657000			Mis|F|N|S		AML								11	30					0	0	1	0	0
C2orf39	92749	broad.mit.edu	37	2	26667594	26667594	+	Missense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr2:26667594C>G	uc002rhg.2	+	10	1248	c.1174C>G	c.(1174-1176)CTT>GTT	p.L392V	C2orf39_uc010eym.1_RNA	NM_145038	NP_659475	Q96MC2	CC164_HUMAN	hypothetical protein LOC92749	392											0	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					GCATTTTGCTCTTATTGATGA	0.463000													7	40					0	0	1	0	0
C2orf53	339779	broad.mit.edu	37	2	27361043	27361043	+	Missense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr2:27361043G>C	uc002rjb.2	-	3	735	c.155C>G	c.(154-156)TCT>TGT	p.S52C		NM_178553	NP_848648	Q53SZ7	CB053_HUMAN	hypothetical protein LOC339779	52	Pro-rich.										0	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					CTGAGTGGAAGAGAACGGTGG	0.582000													11	26					0	0	1	0	0
DNAJC5G	285126	broad.mit.edu	37	2	27500725	27500725	+	Missense_Mutation	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr2:27500725G>A	uc002rjl.1	+	4	635	c.217G>A	c.(217-219)GAA>AAA	p.E73K	SLC30A3_uc010ylh.1_5'Flank|DNAJC5G_uc010yli.1_Intron|DNAJC5G_uc002rjm.1_Missense_Mutation_p.E73K	NM_173650	NP_775921	Q8N7S2	DNJ5G_HUMAN	DnaJ (Hsp40) homolog, subfamily C, member 5	73	J.				protein folding	membrane	heat shock protein binding|unfolded protein binding			skin(1)	1	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					TCAAGCAGCAGAAATATTCAA	0.473000													4	128					0	0	1	0	0
SLC4A1AP	22950	broad.mit.edu	37	2	27886730	27886730	+	Missense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr2:27886730G>C	uc002rlk.3	+	1	393	c.111G>C	c.(109-111)AAG>AAC	p.K37N	SUPT7L_uc002rlh.1_5'Flank|SUPT7L_uc002rli.1_5'Flank|SUPT7L_uc010ymf.1_5'Flank|SUPT7L_uc002rlj.1_5'Flank|SUPT7L_uc010ezh.1_5'Flank	NM_018158	NP_060628	Q9BWU0	NADAP_HUMAN	solute carrier family 4 (anion exchanger),	37						cytoplasm|nucleus	double-stranded RNA binding|protein binding				0	Acute lymphoblastic leukemia(172;0.155)					GGAACGTAAAGACCGAAGGGT	0.577000													41	187					0	0	1	0	0
PPP1CB	5500	broad.mit.edu	37	2	29011673	29011673	+	Missense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr2:29011673C>G	uc002rmg.2	+	7	902	c.742C>G	c.(742-744)CAG>GAG	p.Q248E	PPP1CB_uc010ymj.1_Missense_Mutation_p.Q220E|PPP1CB_uc010yml.1_Missense_Mutation_p.Q220E|PPP1CB_uc002rmh.2_Missense_Mutation_p.Q248E|SPDYA_uc002rmi.2_Translation_Start_Site	NM_206876	NP_996759	P62140	PP1B_HUMAN	protein phosphatase 1, catalytic subunit, beta	248					cell cycle|cell division|glycogen metabolic process|triglyceride catabolic process	MLL5-L complex|nucleolus|PTW/PP1 phosphatase complex	metal ion binding|myosin phosphatase activity|myosin-light-chain-phosphatase activity|protein binding			skin(1)	1	Acute lymphoblastic leukemia(172;0.155)					TCGAGCTCATCAGGTATGAAA	0.229000													22	82					0	0	1	0	0
SPDYA	245711	broad.mit.edu	37	2	29063288	29063288	+	Nonsense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr2:29063288C>G	uc002rmj.2	+	7	1009	c.803C>G	c.(802-804)TCA>TGA	p.S268*	SPDYA_uc002rmi.2_Nonsense_Mutation_p.S268*|SPDYA_uc002rmk.2_Nonsense_Mutation_p.S268*|SPDYA_uc002rml.2_Nonsense_Mutation_p.S268*	NM_182756	NP_877433	Q5MJ70	SPDYA_HUMAN	speedy homolog A isoform 1	268					G1/S transition of mitotic cell cycle|multicellular organismal development|positive regulation of cell proliferation|response to DNA damage stimulus	nucleus	protein kinase binding			upper_aerodigestive_tract(1)|ovary(1)	2	Acute lymphoblastic leukemia(172;0.155)					AACTCACTGTCAATGGACATA	0.373000													22	88					0	0	1	0	0
GALNT14	79623	broad.mit.edu	37	2	31152319	31152319	+	Missense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr2:31152319C>G	uc002rnr.2	-	11	1712	c.1093G>C	c.(1093-1095)GAA>CAA	p.E365Q	GALNT14_uc002rnq.2_Missense_Mutation_p.E345Q|GALNT14_uc002rns.2_Missense_Mutation_p.E370Q|GALNT14_uc010ymr.1_Missense_Mutation_p.E330Q|GALNT14_uc010ezo.1_Missense_Mutation_p.E332Q	NM_024572	NP_078848	Q96FL9	GLT14_HUMAN	N-acetylgalactosaminyltransferase 14	365	Lumenal (Potential).					Golgi membrane|integral to membrane	polypeptide N-acetylgalactosaminyltransferase activity|sugar binding			upper_aerodigestive_tract(2)|skin(1)	3	Acute lymphoblastic leukemia(172;0.155)					TGCTTGTATTCATCCATCCAC	0.552000													15	49					0	0	1	0	0
HEATR5B	54497	broad.mit.edu	37	2	37306395	37306395	+	Missense_Mutation	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr2:37306395C>T	uc002rpp.1	-	3	302	c.206G>A	c.(205-207)CGA>CAA	p.R69Q		NM_019024	NP_061897	Q9P2D3	HTR5B_HUMAN	HEAT repeat containing 5B	69							binding			ovary(5)|skin(2)|breast(1)	8		all_hematologic(82;0.21)				TAATAATTTTCGTGTAGGTGG	0.313000													8	33					0	0	1	0	0
SOS1	6654	broad.mit.edu	37	2	39222312	39222312	+	Missense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr2:39222312C>G	uc002rrk.3	-	20	3339	c.3298G>C	c.(3298-3300)GAT>CAT	p.D1100H	SOS1_uc002rrj.3_Missense_Mutation_p.D714H	NM_005633	NP_005624	Q07889	SOS1_HUMAN	son of sevenless homolog 1	1100					apoptosis|axon guidance|blood coagulation|epidermal growth factor receptor signaling pathway|fibroblast growth factor receptor signaling pathway|induction of apoptosis by extracellular signals|insulin receptor signaling pathway|leukocyte migration|nerve growth factor receptor signaling pathway|Ras protein signal transduction	cytosol	DNA binding|protein binding|Rho GTPase activator activity|Rho guanyl-nucleotide exchange factor activity			ovary(4)|breast(3)|lung(2)|central_nervous_system(1)	10		all_hematologic(82;0.21)				CTGCAAACATCTGTGGTACTG	0.423000									Noonan_syndrome				32	86					0	0	1	0	0
HAAO	23498	broad.mit.edu	37	2	43010491	43010491	+	Missense_Mutation	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr2:43010491C>T	uc002rst.3	-	4	388	c.313G>A	c.(313-315)GAG>AAG	p.E105K	HAAO_uc010ynw.1_Missense_Mutation_p.E105K	NM_012205	NP_036337	P46952	3HAO_HUMAN	3-hydroxyanthranilate 3,4-dioxygenase	105	Domain A (catalytic) (By similarity).	Substrate (By similarity).			neuron homeostasis|pyridine nucleotide biosynthetic process|quinolinate biosynthetic process|response to cadmium ion|response to zinc ion|tryptophan catabolic process	cytosol|soluble fraction	3-hydroxyanthranilate 3,4-dioxygenase activity|electron carrier activity|ferrous iron binding			ovary(1)	1						CGCCTTCGCTCAACCACCAGC	0.582000													11	26					0	0	1	0	0
MSH2	4436	broad.mit.edu	37	2	47705646	47705646	+	Nonsense_Mutation	SNP	C	T	T	rs63749917		TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr2:47705646C>T	uc002rvy.1	+	14	2514	c.2446C>T	c.(2446-2448)CAG>TAG	p.Q816*	MSH2_uc010yoh.1_Nonsense_Mutation_p.Q750*|MSH2_uc002rvz.2_Nonsense_Mutation_p.Q816*|MSH2_uc010fbg.2_Nonsense_Mutation_p.Q626*	NM_000251	NP_000242	P43246	MSH2_HUMAN	mutS homolog 2	816					B cell differentiation|DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|double-strand break repair|intra-S DNA damage checkpoint|isotype switching|maintenance of DNA repeat elements|male gonad development|meiotic gene conversion|meiotic mismatch repair|negative regulation of neuron apoptosis|negative regulation of reciprocal meiotic recombination|positive regulation of helicase activity|postreplication repair|response to UV-B|response to X-ray|somatic hypermutation of immunoglobulin genes	MutSalpha complex|MutSbeta complex|nuclear chromosome	ATP binding|DNA-dependent ATPase activity|double-strand/single-strand DNA junction binding|guanine/thymine mispair binding|loop DNA binding|protein C-terminus binding|protein homodimerization activity|protein kinase binding|Y-form DNA binding	p.?(2)		large_intestine(33)|haematopoietic_and_lymphoid_tissue(6)|endometrium(4)|ovary(3)|cervix(2)|central_nervous_system(2)|stomach(1)|small_intestine(1)|breast(1)|skin(1)|prostate(1)	55		all_hematologic(82;0.0359)|Acute lymphoblastic leukemia(82;0.175)	Lung(47;0.101)|LUSC - Lung squamous cell carcinoma(58;0.151)			TATGCTTTATCAGGTGAAGAA	0.373000			D|Mis|N|F|S		colorectal|endometrial|ovarian	colorectal|endometrial|ovarian		MMR	Lynch_syndrome|Muir-Torre_syndrome|Turcot_syndrome|Constitutional_Mismatch_Repair_Deficiency_Syndrome				27	114					0	0	1	0	0
MSH6	2956	broad.mit.edu	37	2	48026985	48026985	+	Silent	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr2:48026985G>C	uc002rwd.3	+	4	2015	c.1863G>C	c.(1861-1863)CTG>CTC	p.L621L	MSH6_uc002rwc.2_Silent_p.L621L|MSH6_uc010fbj.2_Silent_p.L319L|MSH6_uc010yoi.1_Silent_p.L491L|MSH6_uc010yoj.1_Silent_p.L319L	NM_000179	NP_000170	P52701	MSH6_HUMAN	mutS homolog 6	621					determination of adult lifespan|DNA damage response, signal transduction resulting in induction of apoptosis|isotype switching|meiotic mismatch repair|negative regulation of DNA recombination|positive regulation of helicase activity|reciprocal meiotic recombination|response to UV|somatic hypermutation of immunoglobulin genes	MutSalpha complex	ATP binding|DNA-dependent ATPase activity|protein binding			large_intestine(53)|central_nervous_system(28)|endometrium(28)|stomach(22)|haematopoietic_and_lymphoid_tissue(9)|lung(7)|skin(6)|urinary_tract(5)|breast(5)|ovary(3)|thyroid(1)|upper_aerodigestive_tract(1)	168		Acute lymphoblastic leukemia(82;0.0299)|all_hematologic(82;0.0358)	Lung(47;0.101)|LUSC - Lung squamous cell carcinoma(58;0.151)			AGGAAGGTCTGATACCCGGCT	0.398000			Mis|N|F|S		colorectal	colorectal|endometrial|ovarian		MMR	Lynch_syndrome|Muir-Torre_syndrome|Turcot_syndrome|Constitutional_Mismatch_Repair_Deficiency_Syndrome				43	117					0	0	1	0	0
EHBP1	23301	broad.mit.edu	37	2	63220778	63220778	+	Silent	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr2:63220778C>T	uc002sby.2	+	19	3542	c.3060C>T	c.(3058-3060)TTC>TTT	p.F1020F	EHBP1_uc010fcp.2_Silent_p.F949F|EHBP1_uc002sbz.2_Silent_p.F949F|EHBP1_uc002scb.2_Silent_p.F985F	NM_015252	NP_056067	Q8NDI1	EHBP1_HUMAN	EH domain binding protein 1 isoform 1	1020						cytoplasm|membrane				ovary(1)|breast(1)	2	Lung NSC(7;0.0951)|all_lung(7;0.169)		LUSC - Lung squamous cell carcinoma(7;7.74e-05)|Epithelial(17;0.189)			TTCAGTCTTTCAGCCAATATA	0.284000									Hereditary_Prostate_Cancer				14	44					0	0	1	0	0
ADD2	119	broad.mit.edu	37	2	70931461	70931461	+	Missense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr2:70931461G>C	uc002sgz.2	-	4	779	c.314C>G	c.(313-315)TCT>TGT	p.S105C	ADD2_uc010fds.1_RNA|ADD2_uc002sgy.2_Missense_Mutation_p.S105C|ADD2_uc002sha.2_Missense_Mutation_p.S105C|ADD2_uc002sgx.2_Missense_Mutation_p.S105C|ADD2_uc010fdt.1_Missense_Mutation_p.S105C|ADD2_uc002shc.1_Missense_Mutation_p.S105C|ADD2_uc002shd.1_Missense_Mutation_p.S105C|ADD2_uc010fdu.1_Missense_Mutation_p.S121C	NM_001617	NP_001608	P35612	ADDB_HUMAN	adducin 2 isoform a	105					actin filament bundle assembly|barbed-end actin filament capping|positive regulation of protein binding	cytoplasm|F-actin capping protein complex|plasma membrane	actin filament binding|calmodulin binding|metal ion binding|protein heterodimerization activity|protein homodimerization activity|spectrin binding			ovary(2)|pancreas(1)	3						ACTCATGGAAGATGTCGGGAA	0.602000													5	171					0	0	1	0	0
RAB11FIP5	26056	broad.mit.edu	37	2	73315528	73315528	+	Silent	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr2:73315528C>G	uc002siu.3	-	3	1459	c.1218G>C	c.(1216-1218)CTG>CTC	p.L406L	RAB11FIP5_uc002sit.3_Silent_p.L328L	NM_015470	NP_056285	Q9BXF6	RFIP5_HUMAN	RAB11 family interacting protein 5 (class I)	406					protein transport	mitochondrial outer membrane|recycling endosome membrane	gamma-tubulin binding				0						CCTGAGCACTCAGCTCCTCCT	0.657000													32	100					0	0	1	0	0
CCT7	10574	broad.mit.edu	37	2	73479988	73479988	+	Silent	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr2:73479988G>A	uc002siz.2	+	12	1733	c.1631G>A	c.(1630-1632)TGA>TAA	p.*544*	CCT7_uc002sja.2_Silent_p.*340*|CCT7_uc010yrf.1_Silent_p.*500*|CCT7_uc010feu.2_Silent_p.*502*|CCT7_uc010yrg.1_Silent_p.*444*|CCT7_uc010yrh.1_Silent_p.*416*|CCT7_uc010yri.1_Silent_p.*457*	NM_006429	NP_006420	Q99832	TCPH_HUMAN	chaperonin containing TCP1, subunit 7 isoform a	544					'de novo' posttranslational protein folding		ATP binding|unfolded protein binding				0						CGCCCCCACTGAGAGGCACCC	0.597000													9	29					0	0	1	0	0
DCTN1	1639	broad.mit.edu	37	2	74598150	74598150	+	Missense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr2:74598150C>G	uc002skx.2	-	9	1110	c.799G>C	c.(799-801)GAG>CAG	p.E267Q	DCTN1_uc002skv.2_Missense_Mutation_p.E133Q|DCTN1_uc002sku.2_Missense_Mutation_p.E133Q|DCTN1_uc002skw.1_Missense_Mutation_p.E243Q|DCTN1_uc010ffd.2_Missense_Mutation_p.E247Q|DCTN1_uc002sky.2_Missense_Mutation_p.E230Q	NM_004082	NP_004073	Q14203	DCTN1_HUMAN	dynactin 1 isoform 1	267	Potential.				cell death|G2/M transition of mitotic cell cycle|mitosis|nervous system development	centrosome|cytosol|kinetochore|microtubule|spindle pole	motor activity|protein binding			ovary(3)|skin(2)	5						GCCTGCTGCTCCTGCATTTTG	0.557000													126	411					0	0	1	0	0
MRPL35	51318	broad.mit.edu	37	2	86426645	86426645	+	Missense_Mutation	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr2:86426645G>A	uc002srg.3	+	1	90	c.32G>A	c.(31-33)AGA>AAA	p.R11K	MRPL35_uc002srf.3_Missense_Mutation_p.R11K	NM_016622	NP_057706	Q9NZE8	RM35_HUMAN	mitochondrial ribosomal protein L35 isoform a	11					translation	mitochondrial ribosome	structural constituent of ribosome				0						GGTGCAGTGAGAGCAGCTTCA	0.532000													12	41					0	0	1	0	0
KRCC1	51315	broad.mit.edu	37	2	88327498	88327498	+	Missense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr2:88327498G>C	uc002sso.1	-	4	979	c.585C>G	c.(583-585)ATC>ATG	p.I195M	KRCC1_uc002ssp.1_Missense_Mutation_p.I195M	NM_016618	NP_057702	Q9NPI7	KRCC1_HUMAN	lysine-rich coiled-coil 1	195	Lys-rich.|Potential.									ovary(1)	1						TCTTTCTTTGGATGCTCTTGT	0.413000													4	262					0	0	1	0	0
PROM2	150696	broad.mit.edu	37	2	95940548	95940548	+	Missense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr2:95940548C>G	uc002suh.1	+	1	348	c.215C>G	c.(214-216)TCG>TGG	p.S72W	PROM2_uc002sui.2_Missense_Mutation_p.S72W|PROM2_uc002suj.2_5'UTR|PROM2_uc002suk.2_Missense_Mutation_p.S72W|PROM2_uc002sul.2_5'UTR	NM_144707	NP_653308	Q8N271	PROM2_HUMAN	prominin 2 precursor	72	Extracellular (Potential).					apical plasma membrane|basolateral plasma membrane|cilium membrane|integral to membrane|microvillus membrane				ovary(1)	1						CGCTTCCTCTCGGTGGTGCAG	0.652000													71	177					0	0	1	0	0
FAHD2A	51011	broad.mit.edu	37	2	96076738	96076738	+	Missense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr2:96076738C>G	uc002sur.2	+	5	828	c.649C>G	c.(649-651)CTG>GTG	p.L217V	FAHD2A_uc002sus.2_Missense_Mutation_p.L217V	NM_016044	NP_057128	Q96GK7	FAH2A_HUMAN	fumarylacetoacetate hydrolase domain containing	217							hydrolase activity|metal ion binding			ovary(1)	1						CTTCTGCCCTCTGGGCCCTGC	0.562000													22	97					0	0	1	0	0
AFF3	3899	broad.mit.edu	37	2	100182039	100182039	+	Missense_Mutation	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr2:100182039G>A	uc002tag.2	-	19	3265	c.3029C>T	c.(3028-3030)TCG>TTG	p.S1010L	AFF3_uc002taf.2_Missense_Mutation_p.S1035L	NM_002285	NP_002276	P51826	AFF3_HUMAN	AF4/FMR2 family, member 3 isoform 1	1010					multicellular organismal development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding			ovary(2)|pancreas(1)|lung(1)|kidney(1)|skin(1)	6						CTCGATAAACGACAATGCTGC	0.398000													5	141					0	0	1	0	0
SLC9A4	389015	broad.mit.edu	37	2	103149013	103149013	+	Missense_Mutation	SNP	G	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr2:103149013G>T	uc002tbz.3	+	12	2720	c.2263G>T	c.(2263-2265)GAT>TAT	p.D755Y		NM_001011552	NP_001011552	Q6AI14	SL9A4_HUMAN	solute carrier family 9 (sodium/hydrogen	755	Cytoplasmic (Potential).				regulation of pH	apical plasma membrane|basolateral plasma membrane|integral to membrane	sodium:hydrogen antiporter activity			skin(2)|central_nervous_system(1)	3						TCATGCAGTGGATGAGGAGGG	0.537000													16	29					0.000308642	0.000313337	1	1	0
UXS1	80146	broad.mit.edu	37	2	106782514	106782514	+	Missense_Mutation	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr2:106782514C>T	uc002tdm.2	-	2	218	c.120G>A	c.(118-120)ATG>ATA	p.M40I	UXS1_uc002tdn.2_Missense_Mutation_p.M40I|UXS1_uc002tdo.2_5'UTR|UXS1_uc010ywh.1_Intron	NM_025076	NP_079352	Q8NBZ7	UXS1_HUMAN	UDP-glucuronate decarboxylase 1	40	Helical; Signal-anchor for type II membrane protein; (Potential).				cellular metabolic process	Golgi cisterna membrane|integral to membrane	coenzyme binding|UDP-glucuronate decarboxylase activity			ovary(2)	2						ACAATTACCTCATATTAACGA	0.338000													4	38					0	0	1	0	0
ANAPC1	64682	broad.mit.edu	37	2	112608391	112608391	+	Missense_Mutation	SNP	G	C	C	rs148969655	byFrequency	TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr2:112608391G>C	uc002thi.2	-	14	1859	c.1612C>G	c.(1612-1614)CCA>GCA	p.P538A		NM_022662	NP_073153	Q9H1A4	APC1_HUMAN	anaphase promoting complex subunit 1	538					anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|cell division|mitosis|mitotic cell cycle spindle assembly checkpoint|negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|protein K11-linked ubiquitination	anaphase-promoting complex|cytosol|nucleoplasm				skin(2)	2						AGAGGCTTTGGAGTACTAACG	0.433000													29	108					0	0	1	0	0
RGPD5	84220	broad.mit.edu	37	2	113147114	113147114	+	Silent	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr2:113147114G>A	uc002ths.1	-	20	3485	c.3408C>T	c.(3406-3408)TTC>TTT	p.F1136F	RGPD8_uc010fkk.1_Silent_p.F996F|RGPD5_uc002tht.1_Silent_p.F387F	NM_005054	NP_005045	Q99666	RGPD5_HUMAN	RANBP2-like and GRIP domain containing 5 isoform	1136	RanBD1 1.				intracellular transport	cytoplasm	binding				0						CACCATCAGAGAAATCACTGG	0.448000													52	361					0	0	1	0	0
SLC20A1	6574	broad.mit.edu	37	2	113416402	113416402	+	Missense_Mutation	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr2:113416402G>A	uc002tib.2	+	7	1225	c.779G>A	c.(778-780)CGA>CAA	p.R260Q	SLC20A1_uc002tic.1_Missense_Mutation_p.R72Q	NM_005415	NP_005406	Q8WUM9	S20A1_HUMAN	solute carrier family 20 (phosphate	260	Cytoplasmic (Potential).				phosphate metabolic process|positive regulation of I-kappaB kinase/NF-kappaB cascade	integral to plasma membrane	inorganic phosphate transmembrane transporter activity|receptor activity|sodium-dependent phosphate transmembrane transporter activity			ovary(2)	2						TTTTTCCTAGGAGAAATAAAG	0.388000													19	84					0	0	1	0	0
IL1F7	27178	broad.mit.edu	37	2	113676372	113676372	+	Missense_Mutation	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr2:113676372G>A	uc002tij.2	+	5	685	c.643G>A	c.(643-645)GAG>AAG	p.E215K	IL1F7_uc002tik.2_Missense_Mutation_p.E194K|IL1F7_uc002til.2_Missense_Mutation_p.E175K|IL1F7_uc002tim.2_Missense_Mutation_p.E154K|IL1F7_uc002tin.2_Missense_Mutation_p.E189K	NM_014439	NP_055254	Q9NZH6	IL37_HUMAN	interleukin 1 family, member 7 isoform 1	215					immune response	cytosol|extracellular space|nucleus	cytokine activity|interleukin-1 receptor antagonist activity|interleukin-1 receptor binding				0						GAGCCCCAGTGAGGTCAGCGA	0.403000													20	67					0	0	1	0	0
MARCO	8685	broad.mit.edu	37	2	119731963	119731963	+	Missense_Mutation	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr2:119731963G>A	uc002tln.1	+	5	647	c.515G>A	c.(514-516)GGA>GAA	p.G172E	MARCO_uc010yyf.1_Missense_Mutation_p.G94E	NM_006770	NP_006761	Q9UEW3	MARCO_HUMAN	macrophage receptor with collagenous structure	172	Collagen-like.|Extracellular (Potential).				cell surface receptor linked signaling pathway|innate immune response	collagen|integral to plasma membrane	pattern recognition receptor activity|scavenger receptor activity			ovary(3)|skin(2)|central_nervous_system(1)	6						GGCCCGCCGGGACCACCTGCT	0.562000													6	20					0	0	1	0	0
CLASP1	23332	broad.mit.edu	37	2	122176241	122176241	+	Missense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr2:122176241C>G	uc002tnc.2	-	23	2667	c.2277G>C	c.(2275-2277)GAG>GAC	p.E759D	CLASP1_uc002tmz.2_5'UTR|CLASP1_uc002tna.2_Intron|CLASP1_uc010yyw.1_Intron|CLASP1_uc002tnb.2_Intron|CLASP1_uc010yyx.1_Intron|CLASP1_uc010yyy.1_Intron|CLASP1_uc010yyz.1_Intron|CLASP1_uc010yza.1_Intron|CLASP1_uc010yzb.1_Intron|CLASP1_uc010yzc.1_Intron|CLASP1_uc002tng.1_Intron	NM_015282	NP_056097	Q7Z460	CLAP1_HUMAN	CLIP-associating protein 1 isoform 1	759	Ser-rich.|Interaction with microtubules, MAPRE1 and MAPRE3.				axon guidance|cell division|establishment or maintenance of cell polarity|exit from mitosis|G2/M transition of mitotic cell cycle|microtubule anchoring|microtubule bundle formation|microtubule nucleation|microtubule organizing center organization|mitotic prometaphase|negative regulation of microtubule depolymerization	centrosomal corona|condensed chromosome kinetochore|cortical microtubule cytoskeleton|cytoplasmic microtubule|cytosol|Golgi apparatus|kinetochore microtubule	kinetochore binding|microtubule plus-end binding			ovary(1)|central_nervous_system(1)	2	Renal(3;0.0496)					CTCGGCTGCTCTCACGGCTGG	0.587000													21	99					0	0	1	0	0
CNTNAP5	129684	broad.mit.edu	37	2	125281973	125281973	+	Missense_Mutation	SNP	C	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr2:125281973C>A	uc002tno.2	+	9	1782	c.1418C>A	c.(1417-1419)CCG>CAG	p.P473Q	CNTNAP5_uc010flu.2_Missense_Mutation_p.P474Q	NM_130773	NP_570129	Q8WYK1	CNTP5_HUMAN	contactin associated protein-like 5 precursor	473	Laminin G-like 2.|Extracellular (Potential).				cell adhesion|signal transduction	integral to membrane	receptor binding			ovary(10)	10				BRCA - Breast invasive adenocarcinoma(221;0.248)		GCAGCACCCCCGGCTCCAGAC	0.498000													15	59					3.27435e-08	3.35544e-08	1	1	0
IWS1	55677	broad.mit.edu	37	2	128263120	128263120	+	Missense_Mutation	SNP	G	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr2:128263120G>T	uc002ton.2	-	3	662	c.359C>A	c.(358-360)TCT>TAT	p.S120Y	IWS1_uc010yzl.1_RNA|IWS1_uc010fma.2_RNA	NM_017969	NP_060439	Q96ST2	IWS1_HUMAN	IWS1 homolog	120	Glu-rich.				transcription, DNA-dependent	nucleus	DNA binding			ovary(1)	1	Colorectal(110;0.1)			BRCA - Breast invasive adenocarcinoma(221;0.0735)		TTCACTCTCAGAGTCGCTCCC	0.473000													5	259					0.00116845	0.00118158	1	1	0
UGGT1	56886	broad.mit.edu	37	2	128867254	128867254	+	Missense_Mutation	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr2:128867254C>T	uc002tps.2	+	5	633	c.455C>T	c.(454-456)TCA>TTA	p.S152L	UGGT1_uc010fme.1_Missense_Mutation_p.S27L|UGGT1_uc002tpr.2_Missense_Mutation_p.S128L	NM_020120	NP_064505	Q9NYU2	UGGG1_HUMAN	UDP-glucose ceramide glucosyltransferase-like 1	152					'de novo' posttranslational protein folding|post-translational protein modification|protein N-linked glycosylation via asparagine	endoplasmic reticulum lumen|ER-Golgi intermediate compartment	UDP-glucose:glycoprotein glucosyltransferase activity|unfolded protein binding			ovary(1)	1						TCGTTTTTTTCAGTGCATGGA	0.378000													4	104					0	0	1	0	0
GPR148	344561	broad.mit.edu	37	2	131487174	131487174	+	Silent	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr2:131487174C>T	uc002trv.1	+	1	452	c.450C>T	c.(448-450)GTC>GTT	p.V150V		NM_207364	NP_997247	Q8TDV2	GP148_HUMAN	G protein-coupled receptor 148	150	Helical; Name=3; (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity			skin(1)	1	Colorectal(110;0.1)					ACCTGGCAGTCATCCATCCAC	0.607000													19	52					0	0	1	0	0
ARHGEF4	50649	broad.mit.edu	37	2	131798860	131798860	+	Missense_Mutation	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr2:131798860G>A	uc002tsa.1	+	9	1682	c.1162G>A	c.(1162-1164)GAG>AAG	p.E388K	ARHGEF4_uc010fmw.1_Intron|ARHGEF4_uc002tsb.1_Missense_Mutation_p.E388K|ARHGEF4_uc010fmx.1_Missense_Mutation_p.E328K|ARHGEF4_uc002tsc.1_5'UTR	NM_015320	NP_056135	Q9NR80	ARHG4_HUMAN	Rho guanine nucleotide exchange factor 4 isoform	388	DH.				apoptosis|filopodium assembly|induction of apoptosis by extracellular signals|lamellipodium assembly|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|ruffle membrane	protein domain specific binding|Rac guanyl-nucleotide exchange factor activity			breast(3)|ovary(2)|skin(1)	6		Prostate(154;0.055)		BRCA - Breast invasive adenocarcinoma(221;0.097)		CGCCTGCGTGGAGCTCTCCCG	0.577000													37	167					0	0	1	0	0
NCRNA00164	554226	broad.mit.edu	37	2	132911228	132911228	+	RNA	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr2:132911228C>T	uc002tti.3	-	5		c.901G>A			NCRNA00164_uc002ttj.3_Intron	NR_027019				Homo sapiens non-protein coding RNA 164, mRNA (cDNA clone IMAGE:5169389), with apparent retained intron.												0						TGCCAACTATCTCTGATGATC	0.388000													8	50					0	0	1	0	0
ZEB2	9839	broad.mit.edu	37	2	145147260	145147260	+	Missense_Mutation	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr2:145147260C>T	uc002tvu.2	-	10	3883	c.3403G>A	c.(3403-3405)GAG>AAG	p.E1135K	ZEB2_uc002tvv.2_Missense_Mutation_p.E1129K|ZEB2_uc010zbm.1_Missense_Mutation_p.E1106K|ZEB2_uc010fnp.2_Intron	NM_014795	NP_055610	O60315	ZEB2_HUMAN	zinc finger homeobox 1b	1135	Glu-rich (acidic).					cytoplasm|nucleolus	phosphatase regulator activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|SMAD binding|zinc ion binding			ovary(5)|pancreas(2)|upper_aerodigestive_tract(1)|large_intestine(1)	9				BRCA - Breast invasive adenocarcinoma(221;0.112)		TTCTCGCTCTCGCCATCCCTC	0.587000													52	201					0	0	1	0	0
ORC4L	5000	broad.mit.edu	37	2	148710052	148710052	+	Missense_Mutation	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr2:148710052C>T	uc002twi.2	-	8	613	c.478G>A	c.(478-480)GAA>AAA	p.E160K	ORC4L_uc002twj.2_Missense_Mutation_p.E160K|ORC4L_uc010zbo.1_Missense_Mutation_p.E86K|ORC4L_uc010zbp.1_Intron|ORC4L_uc010fnr.2_Missense_Mutation_p.E160K|ORC4L_uc010zbq.1_Missense_Mutation_p.E76K|ORC4L_uc002twk.2_Missense_Mutation_p.E160K|ORC4L_uc010zbr.1_Missense_Mutation_p.E160K	NM_181741	NP_859525	O43929	ORC4_HUMAN	origin recognition complex subunit 4	160				DE->AA: Impairs ORC complex formation.	cell cycle checkpoint|DNA-dependent DNA replication initiation|G1/S transition of mitotic cell cycle|M/G1 transition of mitotic cell cycle|S phase of mitotic cell cycle	nuclear origin of replication recognition complex|nucleoplasm	ATP binding|DNA replication origin binding|nucleoside-triphosphatase activity|protein binding				0				BRCA - Breast invasive adenocarcinoma(221;0.0963)|COAD - Colon adenocarcinoma(177;0.203)		AGATCAAATTCATCTAATATG	0.333000													20	54					0	0	1	0	0
NEB	4703	broad.mit.edu	37	2	152470994	152470994	+	Missense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr2:152470994C>G	uc010fnx.2	-	73	10859	c.10668G>C	c.(10666-10668)CAG>CAC	p.Q3556H		NM_004543	NP_004534	P20929	NEBU_HUMAN	nebulin isoform 3	3556	Nebulin 97.				muscle filament sliding|muscle organ development|regulation of actin filament length|somatic muscle development	actin cytoskeleton|cytosol|Z disc	actin binding|structural constituent of muscle			ovary(8)|large_intestine(5)|breast(3)|central_nervous_system(2)|skin(1)|pancreas(1)	20				BRCA - Breast invasive adenocarcinoma(221;0.219)		CCCTGTCACTCTGGATCTTGG	0.537000													8	332					0	0	1	0	0
TANC1	85461	broad.mit.edu	37	2	160086183	160086183	+	Missense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr2:160086183G>C	uc002uag.2	+	27	4520	c.4246G>C	c.(4246-4248)GAG>CAG	p.E1416Q	TANC1_uc010zcm.1_3'UTR|TANC1_uc010fon.2_Missense_Mutation_p.E260Q	NM_033394	NP_203752	Q9C0D5	TANC1_HUMAN	tetratricopeptide repeat, ankyrin repeat and	1416						cell junction|postsynaptic density|postsynaptic membrane	binding			ovary(2)|central_nervous_system(1)	3						CGTAGAAGAGGAGTGCAAACA	0.562000													24	78					0	0	1	0	0
TANC1	85461	broad.mit.edu	37	2	160086255	160086255	+	Missense_Mutation	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr2:160086255G>A	uc002uag.2	+	27	4592	c.4318G>A	c.(4318-4320)GAG>AAG	p.E1440K	TANC1_uc010zcm.1_3'UTR|TANC1_uc010fon.2_Missense_Mutation_p.E284K	NM_033394	NP_203752	Q9C0D5	TANC1_HUMAN	tetratricopeptide repeat, ankyrin repeat and	1440						cell junction|postsynaptic density|postsynaptic membrane	binding			ovary(2)|central_nervous_system(1)	3						CAACGACTCCGAGAACGAAGA	0.542000													33	104					0	0	1	0	0
BAZ2B	29994	broad.mit.edu	37	2	160193581	160193581	+	Missense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr2:160193581C>G	uc002uao.2	-	33	6020	c.5668G>C	c.(5668-5670)GAG>CAG	p.E1890Q	BAZ2B_uc002uap.2_Missense_Mutation_p.E1854Q	NM_013450	NP_038478	Q9UIF8	BAZ2B_HUMAN	bromodomain adjacent to zinc finger domain, 2B	1890					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|protein binding|zinc ion binding			ovary(3)|skin(1)	4						GCAATATCCTCTTCAATTCTG	0.418000													31	103					0	0	1	0	0
COBLL1	22837	broad.mit.edu	37	2	165578671	165578671	+	Nonsense_Mutation	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr2:165578671G>A	uc010zcw.1	-	9	1232	c.1108C>T	c.(1108-1110)CAG>TAG	p.Q370*	COBLL1_uc002ucp.2_Nonsense_Mutation_p.Q304*|COBLL1_uc002ucq.2_Nonsense_Mutation_p.Q304*|COBLL1_uc010zcx.1_Nonsense_Mutation_p.Q350*|COBLL1_uc002ucs.1_RNA|COBLL1_uc002uco.2_Nonsense_Mutation_p.Q73*	NM_014900	NP_055715	Q53SF7	COBL1_HUMAN	COBL-like 1	342										ovary(2)|pancreas(1)	3						GGGACACTCTGAGATGCTGGC	0.512000													23	74					0	0	1	0	0
CSRNP3	80034	broad.mit.edu	37	2	166536087	166536087	+	Missense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr2:166536087C>G	uc002udf.2	+	7	1958	c.1582C>G	c.(1582-1584)CAA>GAA	p.Q528E	CSRNP3_uc002udg.2_Missense_Mutation_p.Q528E	NM_024969	NP_079245	Q8WYN3	CSRN3_HUMAN	cysteine-serine-rich nuclear protein 3	528					apoptosis|positive regulation of apoptosis|positive regulation of transcription from RNA polymerase II promoter	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity			ovary(3)|large_intestine(1)|skin(1)	5						CAATCACCCTCAAGTGGAATT	0.468000													3	140					0	0	1	0	0
XIRP2	129446	broad.mit.edu	37	2	168108178	168108178	+	Missense_Mutation	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr2:168108178G>A	uc002udx.2	+	8	10294	c.10276G>A	c.(10276-10278)GAG>AAG	p.E3426K	XIRP2_uc010fpn.2_Intron|XIRP2_uc010fpo.2_Intron|XIRP2_uc010fpp.2_Intron|XIRP2_uc002udy.2_Missense_Mutation_p.E3251K|XIRP2_uc010fpq.2_Missense_Mutation_p.E3204K|XIRP2_uc010fpr.2_Intron	NM_152381	NP_689594	A4UGR9	XIRP2_HUMAN	xin actin-binding repeat containing 2 isoform 1	3251					actin cytoskeleton organization	cell junction	actin binding			skin(7)|ovary(6)|pancreas(1)	14						GGATGCATTTGAGAGTCAAAT	0.453000													19	81					0	0	1	0	0
LRP2	4036	broad.mit.edu	37	2	170063720	170063720	+	Silent	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr2:170063720C>T	uc002ues.2	-	39	6723	c.6510G>A	c.(6508-6510)CTG>CTA	p.L2170L		NM_004525	NP_004516	P98164	LRP2_HUMAN	low density lipoprotein-related protein 2	2170	LDL-receptor class B 21.|Extracellular (Potential).				hormone biosynthetic process|protein glycosylation|receptor-mediated endocytosis|vitamin D metabolic process	coated pit|integral to membrane|lysosome	calcium ion binding|receptor activity|SH3 domain binding			ovary(13)|skin(6)|central_nervous_system(4)|large_intestine(3)|kidney(2)|pancreas(1)	29				STAD - Stomach adenocarcinoma(1183;0.000766)|COAD - Colon adenocarcinoma(177;0.0101)	Gentamicin(DB00798)|Insulin Glargine recombinant(DB00047)|Insulin Lyspro recombinant(DB00046)|Insulin recombinant(DB00030)|Insulin, porcine(DB00071)|Urokinase(DB00013)	GAACTTCTATCAGTGTTTCAG	0.398000													20	85					0	0	1	0	0
FASTKD1	79675	broad.mit.edu	37	2	170396618	170396618	+	Silent	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr2:170396618G>A	uc002uev.3	-	10	2276	c.1888C>T	c.(1888-1890)CTG>TTG	p.L630L	FASTKD1_uc002uew.3_RNA|FASTKD1_uc002uex.3_Silent_p.L616L	NM_024622	NP_078898	Q53R41	FAKD1_HUMAN	FAST kinase domains 1	630					apoptosis|cellular respiration	mitochondrion	ATP binding|protein kinase activity			ovary(4)	4						GCCTTTAGCAGATCTTCTGGA	0.269000													5	44					0	0	1	0	0
FASTKD1	79675	broad.mit.edu	37	2	170396650	170396650	+	Missense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr2:170396650G>C	uc002uev.3	-	10	2244	c.1856C>G	c.(1855-1857)TCT>TGT	p.S619C	FASTKD1_uc002uew.3_RNA|FASTKD1_uc002uex.3_Missense_Mutation_p.S605C	NM_024622	NP_078898	Q53R41	FAKD1_HUMAN	FAST kinase domains 1	619					apoptosis|cellular respiration	mitochondrion	ATP binding|protein kinase activity			ovary(4)	4						TGTGGCCAAAGAGAAACCAAG	0.289000													9	47					0	0	1	0	0
PPIG	9360	broad.mit.edu	37	2	170488307	170488307	+	Missense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr2:170488307G>C	uc002uez.2	+	11	1013	c.793G>C	c.(793-795)GAA>CAA	p.E265Q	PPIG_uc010fpx.2_Missense_Mutation_p.E250Q|PPIG_uc010fpy.2_Missense_Mutation_p.E258Q|PPIG_uc002ufa.2_Missense_Mutation_p.E265Q|PPIG_uc002ufb.2_Missense_Mutation_p.E265Q|PPIG_uc002ufd.2_Missense_Mutation_p.E262Q	NM_004792	NP_004783	Q13427	PPIG_HUMAN	peptidylprolyl isomerase G	265					protein folding|RNA splicing	nuclear matrix|nuclear speck	cyclosporin A binding|peptidyl-prolyl cis-trans isomerase activity			ovary(2)|central_nervous_system(1)	3					L-Proline(DB00172)	TGAAAATCTTGAAGCACAACC	0.383000													29	114					0	0	1	0	0
OLA1	29789	broad.mit.edu	37	2	175094174	175094174	+	Missense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr2:175094174G>C	uc002uih.2	-	3	293	c.107C>G	c.(106-108)TCT>TGT	p.S36C	OLA1_uc002uii.2_Translation_Start_Site|OLA1_uc010fqq.2_Missense_Mutation_p.S36C|OLA1_uc002uij.2_Translation_Start_Site|OLA1_uc002uik.2_Missense_Mutation_p.S6C|OLA1_uc010fqr.2_Missense_Mutation_p.S36C	NM_013341	NP_037473	Q9NTK5	OLA1_HUMAN	Obg-like ATPase 1 isoform 1	36	ATP.|G.				ATP catabolic process	cytoplasm	ATP binding|GTP binding|hydrolase activity|protein binding			ovary(1)|breast(1)	2						GAAGAAAGTAGATTTCCTAAA	0.348000													9	52					0	0	1	0	0
NFE2L2	4780	broad.mit.edu	37	2	178095787	178095787	+	Missense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr2:178095787C>G	uc002ulh.3	-	5	2099	c.1544G>C	c.(1543-1545)AGA>ACA	p.R515T	NFE2L2_uc002ulg.3_Missense_Mutation_p.R499T|NFE2L2_uc010zfa.1_Missense_Mutation_p.R492T|NFE2L2_uc002uli.3_Missense_Mutation_p.R499T	NM_006164	NP_006155	Q16236	NF2L2_HUMAN	nuclear factor erythroid 2-like 2 isoform 1	515	Basic motif.				transcription from RNA polymerase II promoter	centrosome|cytosol|nucleus|plasma membrane	protein dimerization activity|protein domain specific binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			central_nervous_system(1)	1			Epithelial(96;0.00442)|OV - Ovarian serous cystadenocarcinoma(117;0.00739)|all cancers(119;0.0195)|LUSC - Lung squamous cell carcinoma(2;0.036)|Lung(16;0.0935)			TTTTCTTTTTCTGCAATTCTG	0.338000			Mis		NSCLC|HNSCC					HNSCC(56;0.16)			39	115					0	0	1	0	0
TTC30B	150737	broad.mit.edu	37	2	178416204	178416204	+	Missense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr2:178416204G>C	uc002uln.2	-	1	1321	c.1288C>G	c.(1288-1290)CAG>GAG	p.Q430E	TTC30B_uc010zfc.1_Missense_Mutation_p.Q202E	NM_152517	NP_689730	Q8N4P2	TT30B_HUMAN	tetratricopeptide repeat domain 30B	430	TPR 6.				cell projection organization	cilium	binding				0			OV - Ovarian serous cystadenocarcinoma(117;0.00151)|Epithelial(96;0.00931)|all cancers(119;0.0362)			ATTTTTGCCTGAGCCATCAAC	0.383000													4	492					0	0	1	0	0
TTC30A	92104	broad.mit.edu	37	2	178481445	178481445	+	Missense_Mutation	SNP	C	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr2:178481445C>A	uc002ulo.2	-	1	2250	c.1985G>T	c.(1984-1986)GGA>GTA	p.G662V		NM_152275	NP_689488	Q86WT1	TT30A_HUMAN	tetratricopeptide repeat domain 30A	662					cell projection organization	cilium	binding				0			OV - Ovarian serous cystadenocarcinoma(117;0.000423)|Epithelial(96;0.00373)|all cancers(119;0.0169)			CTTATTCCATCCTATAATCTC	0.343000													44	146					1.61004e-24	1.68667e-24	1	1	0
TTC30A	92104	broad.mit.edu	37	2	178482142	178482142	+	Missense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr2:178482142G>C	uc002ulo.2	-	1	1553	c.1288C>G	c.(1288-1290)CAG>GAG	p.Q430E		NM_152275	NP_689488	Q86WT1	TT30A_HUMAN	tetratricopeptide repeat domain 30A	430	TPR 6.				cell projection organization	cilium	binding				0			OV - Ovarian serous cystadenocarcinoma(117;0.000423)|Epithelial(96;0.00373)|all cancers(119;0.0169)			ATTTTTGCCTGAGCCATCAAC	0.393000													5	230					0	0	1	0	0
FKBP7	51661	broad.mit.edu	37	2	179343350	179343350	+	Translation_Start_Site	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr2:179343350G>C	uc002umk.2	-	1	6	c.-123C>G	c.(-125--121)ATCTA>ATGTA		FKBP7_uc002umm.2_Translation_Start_Site|FKBP7_uc002uml.2_RNA|FKBP7_uc010zff.1_Translation_Start_Site|PLEKHA3_uc002umn.2_5'Flank	NM_181342	NP_851939	Q9Y680	FKBP7_HUMAN	FK506 binding protein 7 isoform a precursor						protein folding	endoplasmic reticulum lumen|membrane	calcium ion binding|FK506 binding|peptidyl-prolyl cis-trans isomerase activity				0			OV - Ovarian serous cystadenocarcinoma(117;0.00406)|Epithelial(96;0.0159)|all cancers(119;0.0564)			CGGGGCCATAGATGCGGCCCC	0.716000													7	34					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179396631	179396631	+	Missense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr2:179396631C>G	uc010zfg.1	-	307	97231	c.97007G>C	c.(97006-97008)AGA>ACA	p.R32336T	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.R26031T|TTN_uc010zfi.1_Missense_Mutation_p.R25964T|TTN_uc010zfj.1_Missense_Mutation_p.R25839T|TTN_uc002umq.2_5'Flank	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	33263							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			GATATCAAATCTTGCAGACCT	0.453000													9	26					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179431886	179431886	+	Missense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr2:179431886C>G	uc010zfg.1	-	275	71493	c.71269G>C	c.(71269-71271)GAA>CAA	p.E23757Q	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.E17452Q|TTN_uc010zfi.1_Missense_Mutation_p.E17385Q|TTN_uc010zfj.1_Missense_Mutation_p.E17260Q	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	24684							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TCTCGCTTTTCAACAACATAG	0.428000													7	175					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179437859	179437859	+	Missense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr2:179437859C>G	uc010zfg.1	-	275	65520	c.65296G>C	c.(65296-65298)GAT>CAT	p.D21766H	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.D15461H|TTN_uc010zfi.1_Missense_Mutation_p.D15394H|TTN_uc010zfj.1_Missense_Mutation_p.D15269H	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	22693							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			CTGCTTGTATCCAGAACACGT	0.448000													19	37					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179449409	179449409	+	Silent	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr2:179449409C>T	uc010zfg.1	-	259	57479	c.57255G>A	c.(57253-57255)GCG>GCA	p.A19085A	uc002umo.2_RNA|uc002ump.1_Intron|TTN_uc010zfh.1_Silent_p.A12780A|TTN_uc010zfi.1_Silent_p.A12713A|TTN_uc010zfj.1_Silent_p.A12588A	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	20012							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			ATGGGAACTGCGCAACCATCT	0.433000													62	208					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179501443	179501443	+	Missense_Mutation	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr2:179501443C>T	uc010zfg.1	-	174	33531	c.33307G>A	c.(33307-33309)GAA>AAA	p.E11103K	TTN_uc010zfh.1_Missense_Mutation_p.E4798K|TTN_uc010zfi.1_Missense_Mutation_p.E4731K|TTN_uc010zfj.1_Missense_Mutation_p.E4606K|TTN_uc010fre.1_Missense_Mutation_p.E964K	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	12030							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			AACGGGGCTTCATCAGGAGGT	0.443000													18	63					0	0	1	0	0
ITGAV	3685	broad.mit.edu	37	2	187529285	187529285	+	Missense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr2:187529285C>G	uc002upq.2	+	20	2266	c.1990C>G	c.(1990-1992)CAA>GAA	p.Q664E	ITGAV_uc010frs.2_Missense_Mutation_p.Q628E|ITGAV_uc010zfv.1_Missense_Mutation_p.Q618E	NM_002210	NP_002201	P06756	ITAV_HUMAN	integrin alpha-V isoform 1 precursor	664	Extracellular (Potential).				angiogenesis|axon guidance|blood coagulation|cell-matrix adhesion|entry of bacterium into host cell|entry of symbiont into host cell by promotion of host phagocytosis|entry of virus into host cell|ERK1 and ERK2 cascade|integrin-mediated signaling pathway|leukocyte migration|negative regulation of apoptosis|negative regulation of lipid storage|negative regulation of lipid transport|negative regulation of lipoprotein metabolic process|negative regulation of low-density lipoprotein particle receptor biosynthetic process|negative regulation of macrophage derived foam cell differentiation|positive regulation of cell adhesion|positive regulation of cell proliferation|regulation of apoptotic cell clearance	integrin complex	receptor activity|transforming growth factor beta binding			ovary(2)|kidney(1)|skin(1)	4			OV - Ovarian serous cystadenocarcinoma(117;0.0185)|Epithelial(96;0.072)|all cancers(119;0.189)	STAD - Stomach adenocarcinoma(3;0.106)|COAD - Colon adenocarcinoma(31;0.108)		GGCTCAGAATCAAGGAGAAGG	0.433000													61	214					0	0	1	0	0
ZSWIM2	151112	broad.mit.edu	37	2	187693420	187693420	+	Missense_Mutation	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr2:187693420G>A	uc002upu.1	-	9	1233	c.1193C>T	c.(1192-1194)TCA>TTA	p.S398L		NM_182521	NP_872327	Q8NEG5	ZSWM2_HUMAN	zinc finger, SWIM domain containing 2	398					apoptosis		zinc ion binding			ovary(2)|skin(1)	3			OV - Ovarian serous cystadenocarcinoma(117;0.0274)|Epithelial(96;0.164)			ATTCACTGCTGAATTTTTCCA	0.363000													23	54					0	0	1	0	0
WDR75	84128	broad.mit.edu	37	2	190328666	190328666	+	Missense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr2:190328666G>C	uc002uql.1	+	11	1152	c.1092G>C	c.(1090-1092)CAG>CAC	p.Q364H	WDR75_uc002uqm.1_Missense_Mutation_p.Q300H|WDR75_uc002uqn.1_Missense_Mutation_p.Q142H|WDR75_uc002uqo.1_Missense_Mutation_p.Q142H	NM_032168	NP_115544	Q8IWA0	WDR75_HUMAN	WD repeat domain 75	364	WD 6.					nucleolus				ovary(2)	2			OV - Ovarian serous cystadenocarcinoma(117;0.00105)|Epithelial(96;0.0129)|all cancers(119;0.0456)			ATTCTCTCCAGAGTGATAAAC	0.368000													27	74					0	0	1	0	0
INPP1	3628	broad.mit.edu	37	2	191233880	191233880	+	Missense_Mutation	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr2:191233880G>A	uc002ury.3	+	6	1218	c.518G>A	c.(517-519)GGA>GAA	p.G173E	INPP1_uc010fsb.2_Missense_Mutation_p.G173E|INPP1_uc002urx.3_Missense_Mutation_p.G173E	NM_001128928	NP_001122400	P49441	INPP_HUMAN	inositol polyphosphate-1-phosphatase	173					signal transduction		inositol-1,4-bisphosphate 1-phosphatase activity|metal ion binding			ovary(1)|lung(1)	2			OV - Ovarian serous cystadenocarcinoma(117;0.000286)|Epithelial(96;0.0186)|all cancers(119;0.057)		Lithium(DB01356)	TCCAACCAGGGAATCTTCCCC	0.388000													32	103					0	0	1	0	0
GLS	2744	broad.mit.edu	37	2	191769883	191769883	+	Silent	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr2:191769883G>A	uc002usf.2	+	6	1233	c.969G>A	c.(967-969)TTG>TTA	p.L323L	GLS_uc002use.2_Silent_p.L323L	NM_014905	NP_055720	O94925	GLSK_HUMAN	glutaminase precursor	323					cellular amino acid biosynthetic process|glutamate secretion|glutamine catabolic process|neurotransmitter secretion	mitochondrial matrix	glutaminase activity			ovary(1)|skin(1)	2			OV - Ovarian serous cystadenocarcinoma(117;0.00625)|Epithelial(96;0.0744)|all cancers(119;0.181)		L-Glutamic Acid(DB00142)|L-Glutamine(DB00130)	AACTATTTTTGAATGAAGATG	0.294000													16	53					0	0	1	0	0
SDPR	8436	broad.mit.edu	37	2	192701229	192701229	+	Missense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr2:192701229C>G	uc002utb.2	-	2	1028	c.698G>C	c.(697-699)AGA>ACA	p.R233T		NM_004657	NP_004648	O95810	SDPR_HUMAN	serum deprivation response protein	233	Potential.					caveola|cytosol	phosphatidylserine binding|protein binding			ovary(1)|pancreas(1)	2			OV - Ovarian serous cystadenocarcinoma(117;0.0647)		Phosphatidylserine(DB00144)	CAGGCTGGATCTTTTTATTTT	0.473000													96	234					0	0	1	0	0
PLCL1	5334	broad.mit.edu	37	2	198949706	198949706	+	Missense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr2:198949706C>G	uc010fsp.2	+	2	1756	c.1465C>G	c.(1465-1467)CTT>GTT	p.L489V	PLCL1_uc002uuv.3_Missense_Mutation_p.L410V	NM_001114661	NP_001108133	Q15111	PLCL1_HUMAN	RecName: Full=Inactive phospholipase C-like protein 1;          Short=PLC-L1; AltName: Full=Phospholipase C-deleted in lung carcinoma; AltName: Full=Phospholipase C-related but catalytically inactive protein;          Short=PRIP;	489	PI-PLC X-box.				intracellular signal transduction|lipid metabolic process	cytoplasm	calcium ion binding|phosphatidylinositol phospholipase C activity|signal transducer activity			ovary(1)|skin(1)	2					Quinacrine(DB01103)	CCCACTCATTCTTTGCTTGGG	0.403000													20	56					0	0	1	0	0
C2orf60	129450	broad.mit.edu	37	2	200820176	200820176	+	Silent	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr2:200820176G>A	uc002uvi.3	-	1	284	c.18C>T	c.(16-18)CTC>CTT	p.L6L	C2orf60_uc002uvj.3_5'UTR|C2orf60_uc002uvk.3_RNA|C2orf60_uc010fss.2_5'UTR|C2orf60_uc002uvl.2_Silent_p.L6L|C2orf47_uc002uvm.2_Intron	NM_001039693	NP_001034782	A2RUC4	TYW5_HUMAN	hypothetical protein LOC129450	6					wybutosine biosynthetic process		iron ion binding|oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|protein homodimerization activity|tRNA binding				0						GGGGTACCGGGAGGTGCTGCC	0.652000													10	28					0	0	1	0	0
C2orf47	79568	broad.mit.edu	37	2	200820965	200820965	+	Silent	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr2:200820965G>A	uc002uvm.2	+	2	766	c.444G>A	c.(442-444)GCG>GCA	p.A148A	C2orf60_uc002uvj.3_5'Flank|C2orf60_uc002uvi.3_5'Flank|C2orf60_uc002uvk.3_5'Flank|C2orf60_uc010fss.2_5'Flank|C2orf60_uc002uvl.2_5'Flank	NM_024520	NP_078796	Q8WWC4	CB047_HUMAN	hypothetical protein LOC79568 precursor	148						mitochondrion					0						CCGAGGGAGCGAAGCAGGTTT	0.463000													56	158					0	0	1	0	0
SGOL2	151246	broad.mit.edu	37	2	201438514	201438514	+	Missense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr2:201438514G>C	uc002uvw.2	+	7	3558	c.3445G>C	c.(3445-3447)GAT>CAT	p.D1149H	SGOL2_uc010zhd.1_Missense_Mutation_p.D1149H|SGOL2_uc010zhe.1_Missense_Mutation_p.D1149H	NM_152524	NP_689737	Q562F6	SGOL2_HUMAN	shugoshin-like 2 isoform 1	1149					cell division|mitotic prometaphase	condensed chromosome kinetochore|cytosol|mitotic cohesin complex	protein binding			ovary(2)|skin(2)	4						TAACATACAAGATTCTTCCTT	0.358000													28	100					0	0	1	0	0
SUMO1	7341	broad.mit.edu	37	2	203084794	203084794	+	Missense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr2:203084794C>G	uc002uyz.1	-	2	196	c.48G>C	c.(46-48)AAG>AAC	p.K16N	SUMO1_uc002uza.1_Intron	NM_001005781	NP_001005781	P63165	SUMO1_HUMAN	SMT3 suppressor of mif two 3 homolog 1 isoform a	16					DNA repair|interferon-gamma-mediated signaling pathway|negative regulation of DNA binding|negative regulation of sequence-specific DNA binding transcription factor activity|negative regulation of transcription, DNA-dependent|palate development|positive regulation of proteasomal ubiquitin-dependent protein catabolic process|positive regulation of protein complex assembly|protein sumoylation|regulation of interferon-gamma-mediated signaling pathway|regulation of protein localization	cytoplasm|nuclear membrane|nuclear pore|nuclear speck	ubiquitin protein ligase binding				0						CACCTTCCTTCTTATCCCCCA	0.338000													7	201					0	0	1	0	0
NOP58	51602	broad.mit.edu	37	2	203147126	203147126	+	Silent	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr2:203147126G>A	uc002uzb.2	+	4	378	c.228G>A	c.(226-228)CTG>CTA	p.L76L	NOP58_uc010zhv.1_Silent_p.L76L	NM_015934	NP_057018	Q9Y2X3	NOP58_HUMAN	NOP58 ribonucleoprotein homolog	76					cell growth|rRNA processing|snRNP protein import into nucleus	box C/D snoRNP complex|Cajal body|cytoplasm|pre-snoRNP complex	protein binding|snoRNA binding				0						AAAAAGTTCTGAAGAAAATAG	0.378000													34	76					0	0	1	0	0
ALS2CR8	79800	broad.mit.edu	37	2	203826051	203826051	+	Missense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr2:203826051G>C	uc002uzo.2	+	8	1014	c.734G>C	c.(733-735)TGG>TCG	p.W245S	ALS2CR8_uc002uzn.2_Missense_Mutation_p.W143S|ALS2CR8_uc002uzm.2_Missense_Mutation_p.W245S|ALS2CR8_uc010zhy.1_Intron|ALS2CR8_uc010zhz.1_Intron|ALS2CR8_uc010ftu.1_RNA|ALS2CR8_uc010zia.1_Missense_Mutation_p.W169S|ALS2CR8_uc010zib.1_Missense_Mutation_p.W169S|ALS2CR8_uc010zic.1_Missense_Mutation_p.W157S|ALS2CR8_uc002uzp.2_Missense_Mutation_p.W245S	NM_001104586	NP_001098056	Q8N187	AL2S8_HUMAN	amyotrophic lateral sclerosis 2 (juvenile)	245										large_intestine(1)|ovary(1)	2						CAGAGTGTTTGGGGGACCCGT	0.458000													11	42					0	0	1	0	0
NBEAL1	65065	broad.mit.edu	37	2	204075737	204075737	+	Missense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr2:204075737C>G	uc002uzt.3	+	53	8088	c.7755C>G	c.(7753-7755)ATC>ATG	p.I2585M	NBEAL1_uc002uzs.3_Missense_Mutation_p.I1226M|NBEAL1_uc002uzu.2_Missense_Mutation_p.I80M	NM_001114132	NP_001107604	Q6ZS30	NBEL1_HUMAN	neurobeachin-like 1 isoform 3	2585							binding			ovary(1)|skin(1)	2						GGTCTCAAATCCTGAAGGAAC	0.333000													35	59					0	0	1	0	0
CYP20A1	57404	broad.mit.edu	37	2	204131338	204131338	+	Missense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr2:204131338G>C	uc002uzv.3	+	5	1156	c.534G>C	c.(532-534)CAG>CAC	p.Q178H	CYP20A1_uc002uzx.3_Missense_Mutation_p.Q76H|CYP20A1_uc010zif.1_Missense_Mutation_p.Q178H|CYP20A1_uc002uzy.3_Missense_Mutation_p.Q76H|CYP20A1_uc002uzw.3_RNA|CYP20A1_uc010ftw.2_5'UTR	NM_177538	NP_803882	Q6UW02	CP20A_HUMAN	cytochrome P450, family 20, subfamily A,	178						integral to membrane	electron carrier activity|heme binding|monooxygenase activity|oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen				0						CTGTTACACAGATGGTAATGG	0.418000													38	148					0	0	1	0	0
CRYGB	1419	broad.mit.edu	37	2	209007482	209007482	+	Silent	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr2:209007482C>T	uc002vcp.3	-	3	441	c.408G>A	c.(406-408)GAG>GAA	p.E136E		NM_005210	NP_005201	P07316	CRGB_HUMAN	crystallin, gamma B	136	Beta/gamma crystallin 'Greek key' 4.				visual perception		structural constituent of eye lens				0				Epithelial(149;0.0641)|LUSC - Lung squamous cell carcinoma(261;0.0703)|Lung(261;0.132)		AGTTGGGCATCTCATAGAGGA	0.542000													52	171					0	0	1	0	0
MAP2	4133	broad.mit.edu	37	2	210594968	210594968	+	Silent	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr2:210594968G>A	uc002vde.1	+	15	5579	c.5331G>A	c.(5329-5331)GAG>GAA	p.E1777E	MAP2_uc002vdd.1_Silent_p.E509E|MAP2_uc002vdf.1_Silent_p.E452E|MAP2_uc002vdg.1_Silent_p.E421E|MAP2_uc002vdh.1_Silent_p.E478E|MAP2_uc002vdi.1_Silent_p.E1773E	NM_002374	NP_002365	P11137	MAP2_HUMAN	microtubule-associated protein 2 isoform 1	1777					central nervous system neuron development|dendrite morphogenesis|negative regulation of microtubule depolymerization	cytoplasm|microtubule|microtubule associated complex	beta-dystroglycan binding|calmodulin binding|structural molecule activity			ovary(9)|upper_aerodigestive_tract(2)|large_intestine(2)|pancreas(2)|central_nervous_system(1)|skin(1)	17		Hepatocellular(293;0.137)|Lung NSC(271;0.163)|Renal(323;0.202)		UCEC - Uterine corpus endometrioid carcinoma (47;6.64e-05)|Epithelial(149;3.12e-100)|all cancers(144;6.88e-91)|Lung(261;0.0624)|LUSC - Lung squamous cell carcinoma(261;0.0662)|STAD - Stomach adenocarcinoma(1183;0.18)	Estramustine(DB01196)	ATGGGGCTGAGATCATTACAC	0.517000													12	49					0	0	1	0	0
CPS1	1373	broad.mit.edu	37	2	211421536	211421536	+	Missense_Mutation	SNP	C	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr2:211421536C>A	uc002vee.3	+	1	211	c.79C>A	c.(79-81)CAA>AAA	p.Q27K	CPS1_uc010fur.2_Missense_Mutation_p.Q33K	NM_001875	NP_001866	P31327	CPSM_HUMAN	carbamoyl-phosphate synthetase 1 isoform b	27					carbamoyl phosphate biosynthetic process|citrulline biosynthetic process|glutamine metabolic process|glycogen catabolic process|nitric oxide metabolic process|positive regulation of vasodilation|response to lipopolysaccharide|triglyceride catabolic process|urea cycle	mitochondrial nucleoid	ATP binding|carbamoyl-phosphate synthase (ammonia) activity			ovary(8)|central_nervous_system(3)|breast(1)|skin(1)	13				Epithelial(149;0.00697)|Lung(261;0.0521)|LUSC - Lung squamous cell carcinoma(261;0.0544)|all cancers(144;0.0843)		GACTGCACACCAAAAATGGAA	0.383000													4	158					1	1	1	1	0
IKZF2	22807	broad.mit.edu	37	2	213872299	213872299	+	Missense_Mutation	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr2:213872299C>T	uc002vem.2	-	8	1535	c.1366G>A	c.(1366-1368)GAC>AAC	p.D456N	IKZF2_uc010fuu.2_Missense_Mutation_p.D311N|IKZF2_uc002vej.2_Missense_Mutation_p.D403N|IKZF2_uc002vek.2_RNA|IKZF2_uc010fuv.2_Missense_Mutation_p.D382N|IKZF2_uc002vel.2_Missense_Mutation_p.D377N|IKZF2_uc010fuw.2_Missense_Mutation_p.D230N|IKZF2_uc010fux.2_Missense_Mutation_p.D230N|IKZF2_uc010fuy.2_Missense_Mutation_p.D384N|IKZF2_uc002ven.2_Missense_Mutation_p.D430N|IKZF2_uc002vei.2_Missense_Mutation_p.D234N	NM_016260	NP_057344	Q9UKS7	IKZF2_HUMAN	helios isoform 1	456					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Esophageal squamous(248;0.0559)|Renal(323;0.218)		UCEC - Uterine corpus endometrioid carcinoma (47;0.214)|Epithelial(149;2.97e-07)|all cancers(144;1.53e-05)|LUSC - Lung squamous cell carcinoma(224;0.00599)|Lung(261;0.00792)		TTGTAGATGTCCTTCAGAGAG	0.473000													4	264					0	0	1	0	0
TMEM169	92691	broad.mit.edu	37	2	216964767	216964767	+	Silent	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr2:216964767G>A	uc010zjr.1	+	4	722	c.396G>A	c.(394-396)CTG>CTA	p.L132L	TMEM169_uc010zjs.1_Silent_p.L132L|TMEM169_uc002vfw.2_Silent_p.L132L|TMEM169_uc002vfv.3_Silent_p.L132L	NM_001142310	NP_001135782	Q96HH4	TM169_HUMAN	transmembrane protein 169	132	Extracellular (Potential).					integral to membrane				ovary(1)	1		Renal(323;0.0651)		Epithelial(149;6.44e-06)|all cancers(144;0.000398)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)		TGCAGGAACTGACCAAACCTA	0.542000													33	81					0	0	1	0	0
TNS1	7145	broad.mit.edu	37	2	218686477	218686477	+	Silent	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr2:218686477G>A	uc002vgt.2	-	23	3644	c.3246C>T	c.(3244-3246)ATC>ATT	p.I1082I	TNS1_uc002vgr.2_Silent_p.I1069I|TNS1_uc002vgs.2_Silent_p.I1061I|TNS1_uc010zjv.1_Silent_p.I1061I	NM_022648	NP_072174	Q9HBL0	TENS1_HUMAN	tensin	1082	Ser-rich.					cytoplasm|cytoskeleton|focal adhesion	actin binding			ovary(3)|breast(1)	4		Renal(207;0.0483)|Lung NSC(271;0.213)		Epithelial(149;4.43e-06)|all cancers(144;0.000653)|LUSC - Lung squamous cell carcinoma(224;0.0091)|Lung(261;0.013)		CAGCACTGAGGATGGGGCTGC	0.662000													4	9					0	0	1	0	0
ARPC2	10109	broad.mit.edu	37	2	219103490	219103490	+	Silent	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr2:219103490C>G	uc002vhd.2	+	6	484	c.372C>G	c.(370-372)GTC>GTG	p.V124V	ARPC2_uc002vhe.2_Silent_p.V124V|ARPC2_uc002vhf.2_Silent_p.V10V	NM_152862	NP_690601	O15144	ARPC2_HUMAN	actin related protein 2/3 complex subunit 2	124					cellular component movement	Arp2/3 protein complex|cell projection|Golgi apparatus	actin binding|structural constituent of cytoskeleton			ovary(1)	1		Renal(207;0.0474)		Epithelial(149;1.21e-06)|all cancers(144;0.000212)|LUSC - Lung squamous cell carcinoma(224;0.00829)|Lung(261;0.0103)		TTGCCTCTGTCTTTGAAAAAT	0.413000													3	191					0	0	1	0	0
TMBIM1	64114	broad.mit.edu	37	2	219142177	219142177	+	Splice_Site	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr2:219142177C>G	uc002vho.1	-	10	1278	c.552_splice	c.e10-1	p.S184_splice	PNKD_uc002vhn.2_Intron|TMBIM1_uc002vhp.1_Splice_Site_p.S184_splice|TMBIM1_uc010zjz.1_Splice_Site_p.S10_splice|TMBIM1_uc010zka.1_Splice_Site_p.S73_splice	NM_022152	NP_071435	Q969X1	TMBI1_HUMAN	transmembrane BAX inhibitor motif containing 1							integral to membrane					0		Renal(207;0.0474)		Epithelial(149;8.56e-07)|all cancers(144;0.000154)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)		TTGGTACATACTGGGGAGAAG	0.498000													17	56					0	0	1	0	0
STK36	27148	broad.mit.edu	37	2	219566632	219566632	+	Missense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr2:219566632C>G	uc002viu.2	+	27	4114	c.3848C>G	c.(3847-3849)TCT>TGT	p.S1283C	STK36_uc002viv.2_Missense_Mutation_p.S1262C|STK36_uc002viw.2_Missense_Mutation_p.S461C|STK36_uc002vix.2_Missense_Mutation_p.S328C	NM_015690	NP_056505	Q9NRP7	STK36_HUMAN	serine/threonine kinase 36	1283					cilium assembly|positive regulation of hh target transcription factor activity|positive regulation of smoothened signaling pathway|post-embryonic development	aggresome|cytoplasm|focal adhesion|intermediate filament cytoskeleton|nucleus	ATP binding|protein serine/threonine kinase activity|transcription factor binding			ovary(4)|stomach(2)|lung(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)	11		Renal(207;0.0915)		Epithelial(149;9.65e-07)|all cancers(144;0.000174)|LUSC - Lung squamous cell carcinoma(224;0.00813)|Lung(261;0.00984)		TCCTTGCTCTCTCTGGGGAAT	0.522000													34	92					0	0	1	0	0
CCDC108	255101	broad.mit.edu	37	2	219868909	219868909	+	Missense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr2:219868909C>G	uc002vjl.1	-	33	5404	c.5320G>C	c.(5320-5322)GAG>CAG	p.E1774Q	uc010fvz.1_5'Flank|MIR375_hsa-mir-375|MI0000783_5'Flank	NM_194302	NP_919278	Q6ZU64	CC108_HUMAN	coiled-coil domain containing 108 isoform 1	1774	Glu-rich.					integral to membrane	structural molecule activity			ovary(2)|upper_aerodigestive_tract(1)|pancreas(1)	4		Renal(207;0.0915)		Epithelial(149;1.12e-06)|all cancers(144;0.000196)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)		tcctccaactcttcttcttcc	0.159000													23	76					0	0	1	0	0
ANKZF1	55139	broad.mit.edu	37	2	220099583	220099583	+	Missense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr2:220099583G>C	uc002vkg.2	+	10	1414	c.1240G>C	c.(1240-1242)GAG>CAG	p.E414Q	ANKZF1_uc010zkv.1_3'UTR|ANKZF1_uc010zkw.1_3'UTR|ANKZF1_uc002vkh.2_Missense_Mutation_p.E204Q|ANKZF1_uc002vki.2_Missense_Mutation_p.E414Q|ANKZF1_uc002vkj.1_3'UTR	NM_018089	NP_060559	Q9H8Y5	ANKZ1_HUMAN	ankyrin repeat and zinc finger domain containing	414						intracellular	zinc ion binding			ovary(2)	2		Renal(207;0.0474)		Epithelial(149;1.2e-06)|all cancers(144;0.000197)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)		CTTTCAGGTAGAGTTGGAGCT	0.478000													5	87					0	0	1	0	0
SLC4A3	6508	broad.mit.edu	37	2	220498102	220498102	+	Missense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr2:220498102G>C	uc002vmp.3	+	10	1653	c.1384G>C	c.(1384-1386)GAT>CAT	p.D462H	SLC4A3_uc002vmo.3_Missense_Mutation_p.D489H|SLC4A3_uc010fwm.2_Silent_p.L3L|SLC4A3_uc010fwn.1_5'UTR	NM_005070	NP_005061	P48751	B3A3_HUMAN	solute carrier family 4, anion exchanger, member	462	Cytoplasmic.				bicarbonate transport	integral to plasma membrane|membrane fraction	inorganic anion exchanger activity			ovary(2)|upper_aerodigestive_tract(1)|breast(1)|skin(1)	5		Renal(207;0.0183)		Epithelial(149;2.53e-07)|all cancers(144;5.57e-05)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)		CCATGGCCCTGATGGGGCGGT	0.602000													22	83					0	0	1	0	0
EPHA4	2043	broad.mit.edu	37	2	222294716	222294716	+	Silent	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr2:222294716G>A	uc002vmq.2	-	15	2694	c.2652C>T	c.(2650-2652)AAC>AAT	p.N884N	EPHA4_uc002vmr.2_Silent_p.N884N|EPHA4_uc010zlm.1_Silent_p.N825N|EPHA4_uc010zln.1_Silent_p.N884N	NM_004438	NP_004429	P54764	EPHA4_HUMAN	ephrin receptor EphA4 precursor	884	Cytoplasmic (Potential).					integral to plasma membrane	ATP binding|ephrin receptor activity			lung(6)|large_intestine(2)|central_nervous_system(2)|urinary_tract(1)|skin(1)	12		Renal(207;0.0183)		Epithelial(121;5.38e-09)|all cancers(144;2.47e-06)|LUSC - Lung squamous cell carcinoma(224;0.0115)|Lung(261;0.0154)		AGCTGTTGGGGTTGCGGATGA	0.512000													50	216					0	0	1	0	0
DOCK10	55619	broad.mit.edu	37	2	225751178	225751178	+	Missense_Mutation	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr2:225751178C>T	uc010fwz.1	-	5	726	c.487G>A	c.(487-489)GAA>AAA	p.E163K	DOCK10_uc002vob.2_Missense_Mutation_p.E157K|DOCK10_uc002vod.1_Missense_Mutation_p.E163K	NM_014689	NP_055504	Q96BY6	DOC10_HUMAN	dedicator of cytokinesis 10	163							GTP binding			ovary(2)	2		Renal(207;0.0113)|all_lung(227;0.0486)|Lung NSC(271;0.0653)|all_hematologic(139;0.14)		Epithelial(121;2.37e-10)|all cancers(144;2.26e-07)|Lung(261;0.0143)|LUSC - Lung squamous cell carcinoma(224;0.0178)		TTACTTACTTCATCCTTATCA	0.338000													3	27					0	0	1	0	0
COL4A3	1285	broad.mit.edu	37	2	228121064	228121064	+	Silent	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr2:228121064C>G	uc002vom.1	+	17	1101	c.939C>G	c.(937-939)GTC>GTG	p.V313V	COL4A3_uc002von.1_Silent_p.V313V|COL4A3_uc002voo.1_Silent_p.V313V|COL4A3_uc002vop.1_Silent_p.V313V|uc002voq.1_Intron|uc002vor.1_Intron	NM_000091	NP_000082	Q01955	CO4A3_HUMAN	alpha 3 type IV collagen isoform 1 precursor	313	Triple-helical region.				activation of caspase activity|axon guidance|blood circulation|cell adhesion|cell proliferation|cell surface receptor linked signaling pathway|glomerular basement membrane development|induction of apoptosis|negative regulation of angiogenesis|negative regulation of cell proliferation|sensory perception of sound	collagen type IV	extracellular matrix structural constituent|integrin binding|metalloendopeptidase inhibitor activity			skin(2)|ovary(1)	3		all_lung(227;0.00101)|Lung NSC(271;0.00278)|Renal(207;0.0112)|Ovarian(221;0.0129)|all_hematologic(139;0.211)|Esophageal squamous(248;0.247)		Epithelial(121;1.17e-46)|all cancers(144;6.87e-42)|Lung(261;0.0137)|LUSC - Lung squamous cell carcinoma(224;0.0187)		TTTAGGGAGTCAAGGGCAACA	0.443000													28	64					0	0	1	0	0
SLC16A14	151473	broad.mit.edu	37	2	230910660	230910660	+	Silent	SNP	G	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr2:230910660G>T	uc002vqd.1	-	4	1545	c.1182C>A	c.(1180-1182)CTC>CTA	p.L394L	FBXO36_uc010fxi.1_Intron|SLC16A14_uc002vqe.2_Silent_p.L394L|SLC16A14_uc002vqf.2_Silent_p.L394L	NM_152527	NP_689740	Q7RTX9	MOT14_HUMAN	solute carrier family 16 (monocarboxylic acid	394	Helical; (Potential).					integral to membrane|plasma membrane	symporter activity			ovary(4)|skin(2)	6		Renal(207;0.025)|all_hematologic(139;0.122)|all_lung(227;0.149)|Acute lymphoblastic leukemia(138;0.164)		Epithelial(121;7.31e-13)|all cancers(144;5.1e-10)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(119;0.00948)		TAAAAATACTGAGGACAAGGG	0.488000													19	67					1.33834e-09	1.37694e-09	1	1	0
GIGYF2	26058	broad.mit.edu	37	2	233651973	233651973	+	Missense_Mutation	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr2:233651973G>A	uc002vti.3	+	11	983	c.646G>A	c.(646-648)GAA>AAA	p.E216K	GIGYF2_uc010zmj.1_Missense_Mutation_p.E216K|GIGYF2_uc002vtg.2_Missense_Mutation_p.E216K|GIGYF2_uc002vtj.3_Missense_Mutation_p.E238K|GIGYF2_uc002vtk.3_Missense_Mutation_p.E216K|GIGYF2_uc002vth.3_Missense_Mutation_p.E216K|GIGYF2_uc010zmk.1_RNA|GIGYF2_uc010zml.1_Missense_Mutation_p.E47K	NM_015575	NP_056390	Q6Y7W6	PERQ2_HUMAN	GRB10 interacting GYF protein 2 isoform b	216	Arg-rich.				cell death		protein binding			ovary(4)|central_nervous_system(3)	7		Breast(86;0.00279)|all_hematologic(139;0.00793)|Renal(207;0.0112)|Acute lymphoblastic leukemia(138;0.0182)|all_lung(227;0.0271)|Lung NSC(271;0.0839)		Epithelial(121;7.37e-16)|BRCA - Breast invasive adenocarcinoma(100;0.000472)|LUSC - Lung squamous cell carcinoma(224;0.00902)|Lung(119;0.0118)|GBM - Glioblastoma multiforme(43;0.0145)		TGGAGAAGATGAAGATGGAGG	0.473000													18	65					0	0	1	0	0
SAG	6295	broad.mit.edu	37	2	234255520	234255520	+	Missense_Mutation	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr2:234255520G>A	uc002vuh.2	+	16	1568	c.1180G>A	c.(1180-1182)GAG>AAG	p.E394K	SAG_uc010zmq.1_3'UTR	NM_000541	NP_000532	P10523	ARRS_HUMAN	S-arrestin	394					rhodopsin mediated phototransduction|rhodopsin mediated signaling pathway		protein phosphatase inhibitor activity			ovary(1)	1		Breast(86;0.0013)|Renal(207;0.00339)|all_hematologic(139;0.0116)|all_lung(227;0.018)|Acute lymphoblastic leukemia(138;0.0327)|Lung NSC(271;0.054)		Epithelial(121;2.86e-17)|BRCA - Breast invasive adenocarcinoma(100;0.00037)|LUSC - Lung squamous cell carcinoma(224;0.00608)|Lung(119;0.00714)|GBM - Glioblastoma multiforme(43;0.207)		AGGAGAAGCTGAGGAGGGGAA	0.428000													3	20					0	0	1	0	0
UGT1A5	54579	broad.mit.edu	37	2	234622242	234622242	+	Nonsense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr2:234622242C>G	uc002vuw.2	+	1	605	c.605C>G	c.(604-606)TCA>TGA	p.S202*	UGT1A8_uc010zmv.1_Intron|UGT1A8_uc002vup.2_Intron|UGT1A10_uc002vuq.3_Intron|UGT1A10_uc002vur.2_Intron|UGT1A9_uc010zmw.1_Intron|UGT1A9_uc002vus.2_Intron|UGT1A7_uc010zmx.1_Intron|UGT1A7_uc002vut.2_Intron|UGT1A6_uc002vuu.2_Intron|UGT1A6_uc010zmy.1_Intron|UGT1A6_uc002vuv.3_Intron|UGT1A5_uc010zmz.1_Nonsense_Mutation_p.S202*	NM_019078	NP_061951	P35504	UD15_HUMAN	UDP glycosyltransferase 1 family, polypeptide A5	202					xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	glucuronosyltransferase activity			skin(1)	1		Breast(86;0.000765)|all_lung(227;0.00267)|Renal(207;0.00339)|all_hematologic(139;0.0116)|Acute lymphoblastic leukemia(138;0.0328)|Lung NSC(271;0.0457)|Lung SC(224;0.128)		Epithelial(121;4.51e-18)|BRCA - Breast invasive adenocarcinoma(100;0.000523)|Lung(119;0.00271)|LUSC - Lung squamous cell carcinoma(224;0.00645)		ACGACCAATTCAGACCACATG	0.463000													3	254					0	0	1	0	0
HJURP	55355	broad.mit.edu	37	2	234763116	234763116	+	Missense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr2:234763116C>G	uc002vvg.2	-	1	97	c.31G>C	c.(31-33)GAG>CAG	p.E11Q	HJURP_uc010znd.1_Missense_Mutation_p.E4Q|HJURP_uc010zne.1_Missense_Mutation_p.E4Q	NM_018410	NP_060880	Q8NCD3	HJURP_HUMAN	Holliday junction recognition protein	11					cell cycle|CenH3-containing nucleosome assembly at centromere|centromeric core chromatin assembly|chromosome segregation|regulation of DNA binding|regulation of protein complex assembly	condensed chromosome kinetochore|cytoplasm|nucleolus|nucleoplasm	DNA binding|histone binding			ovary(1)	1		Breast(86;0.00204)|all_lung(227;0.00433)|Renal(207;0.00685)|all_hematologic(139;0.0116)|Acute lymphoblastic leukemia(138;0.0326)|Lung NSC(271;0.0719)|Lung SC(224;0.128)		Epithelial(121;2.01e-18)|BRCA - Breast invasive adenocarcinoma(100;0.000186)|Lung(119;0.00521)|LUSC - Lung squamous cell carcinoma(224;0.00829)		TCCACGTCCTCGCCCTCCATG	0.672000											OREG0003841	type=REGULATORY REGION|Gene=AK074809|Dataset=Stanford ENCODE Dataset|EvidenceSubtype=Transient transfection luciferase assay	7	22					0	0	1	0	0
COL6A3	1293	broad.mit.edu	37	2	238267869	238267869	+	Missense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr2:238267869C>G	uc002vwl.2	-	19	6619	c.6334G>C	c.(6334-6336)GAT>CAT	p.D2112H	COL6A3_uc002vwo.2_Missense_Mutation_p.D1906H|COL6A3_uc010znj.1_Missense_Mutation_p.D1505H	NM_004369	NP_004360	P12111	CO6A3_HUMAN	alpha 3 type VI collagen isoform 1 precursor	2112	Triple-helical region.|Collagen-like 2.				axon guidance|cell adhesion|muscle organ development	collagen type VI|extracellular space	serine-type endopeptidase inhibitor activity			ovary(8)|central_nervous_system(6)|skin(2)|upper_aerodigestive_tract(1)|pancreas(1)	18		Breast(86;0.000301)|Renal(207;0.000966)|all_hematologic(139;0.067)|Ovarian(221;0.0694)|all_lung(227;0.0943)|Melanoma(123;0.203)		Epithelial(121;1.23e-21)|OV - Ovarian serous cystadenocarcinoma(60;1.34e-10)|Kidney(56;5.71e-09)|KIRC - Kidney renal clear cell carcinoma(57;1.51e-07)|BRCA - Breast invasive adenocarcinoma(100;0.00025)|Lung(119;0.0142)|LUSC - Lung squamous cell carcinoma(224;0.034)		TCCAGACCATCCAGTCCAATT	0.408000													6	134					0	0	1	0	0
MLPH	79083	broad.mit.edu	37	2	238419644	238419644	+	Silent	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr2:238419644C>T	uc002vwt.2	+	4	572	c.345C>T	c.(343-345)ATC>ATT	p.I115I	MLPH_uc002vws.2_Silent_p.I115I|MLPH_uc010fyt.1_Silent_p.I115I|MLPH_uc002vwu.2_Silent_p.I115I|MLPH_uc002vwv.2_Silent_p.I115I|MLPH_uc002vww.2_Silent_p.I91I	NM_024101	NP_077006	Q9BV36	MELPH_HUMAN	melanophilin isoform 1	115	RabBD.						metal ion binding			ovary(1)	1		Breast(86;0.000381)|Renal(207;0.000966)|Ovarian(221;0.0695)|all_hematologic(139;0.095)|all_lung(227;0.17)|Melanoma(123;0.203)		Epithelial(121;1.17e-21)|OV - Ovarian serous cystadenocarcinoma(60;1.02e-10)|Kidney(56;4.23e-09)|KIRC - Kidney renal clear cell carcinoma(57;1.15e-07)|BRCA - Breast invasive adenocarcinoma(100;0.000439)|Lung(119;0.0132)|LUSC - Lung squamous cell carcinoma(224;0.0316)		TCGTGAAGATCGGCTCACTGG	0.507000													82	304					0	0	1	0	0
GPC1	2817	broad.mit.edu	37	2	241398601	241398601	+	Silent	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr2:241398601C>T	uc002vyw.3	+	2	542	c.321C>T	c.(319-321)TTC>TTT	p.F107F	PP14571_uc002vyy.1_5'Flank	NM_002081	NP_002072	P35052	GPC1_HUMAN	glypican 1 precursor	107					axon guidance	anchored to membrane|extracellular space|integral to plasma membrane|proteinaceous extracellular matrix	heparan sulfate proteoglycan binding			breast(1)	1		all_epithelial(40;2.79e-15)|Breast(86;2.41e-05)|Renal(207;0.00183)|Ovarian(221;0.0228)|all_lung(227;0.0335)|Lung NSC(271;0.106)|all_hematologic(139;0.158)|Melanoma(123;0.16)|Hepatocellular(293;0.244)		Epithelial(32;4.51e-33)|all cancers(36;1.74e-30)|OV - Ovarian serous cystadenocarcinoma(60;4.73e-15)|Kidney(56;2.99e-09)|KIRC - Kidney renal clear cell carcinoma(57;3.23e-08)|BRCA - Breast invasive adenocarcinoma(100;9.1e-06)|Colorectal(34;0.000487)|Lung(119;0.0013)|LUSC - Lung squamous cell carcinoma(224;0.0154)|COAD - Colon adenocarcinoma(134;0.0194)|READ - Rectum adenocarcinoma(96;0.0949)		TGCGCAGCTTCGATGGTGAGT	0.701000													5	27					0	0	1	0	0
GPR35	2859	broad.mit.edu	37	2	241570131	241570131	+	Missense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr2:241570131C>G	uc002vzs.1	+	1	1337	c.762C>G	c.(760-762)ATC>ATG	p.I254M	GPR35_uc010fzh.1_Missense_Mutation_p.I285M|GPR35_uc010fzi.1_Missense_Mutation_p.I285M	NM_005301	NP_005292	Q9HC97	GPR35_HUMAN	G protein-coupled receptor 35	254	Extracellular (Potential).					integral to plasma membrane	G-protein coupled receptor activity			skin(2)|pancreas(1)	3		all_epithelial(40;7.49e-12)|Breast(86;0.000148)|Renal(207;0.00571)|Ovarian(221;0.104)|all_neural(83;0.107)|all_hematologic(139;0.182)|all_lung(227;0.186)|Melanoma(123;0.238)		Epithelial(32;5.29e-32)|all cancers(36;1.38e-29)|OV - Ovarian serous cystadenocarcinoma(60;2.13e-15)|Kidney(56;3.04e-09)|KIRC - Kidney renal clear cell carcinoma(57;3.23e-08)|BRCA - Breast invasive adenocarcinoma(100;5.02e-06)|Lung(119;0.00163)|Colorectal(34;0.00463)|LUSC - Lung squamous cell carcinoma(224;0.008)|COAD - Colon adenocarcinoma(134;0.031)		TGGAGACGATCCGTCGCGCCC	0.622000													32	149					0	0	1	0	0
HDLBP	3069	broad.mit.edu	37	2	242186507	242186507	+	Missense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr2:242186507C>G	uc002waz.2	-	15	2010	c.1782G>C	c.(1780-1782)AAG>AAC	p.K594N	HDLBP_uc002wba.2_Missense_Mutation_p.K594N|HDLBP_uc002wbb.2_Missense_Mutation_p.K546N	NM_203346	NP_976221	Q00341	VIGLN_HUMAN	high density lipoprotein binding protein	594	KH 7.				cholesterol metabolic process|lipid transport	cytoplasm|high-density lipoprotein particle|nucleus|plasma membrane	lipid binding|protein binding|RNA binding			breast(3)|skin(1)	4		all_cancers(19;7.77e-41)|all_epithelial(40;1.74e-18)|Breast(86;1.53e-05)|Renal(207;0.00179)|all_lung(227;0.00338)|Ovarian(221;0.00556)|Lung NSC(271;0.0121)|Esophageal squamous(248;0.129)|all_hematologic(139;0.158)|Melanoma(123;0.16)|all_neural(83;0.243)|Hepatocellular(293;0.244)		Epithelial(32;8.13e-34)|all cancers(36;4.71e-31)|OV - Ovarian serous cystadenocarcinoma(60;2.34e-15)|Kidney(56;3.72e-09)|KIRC - Kidney renal clear cell carcinoma(57;3.76e-08)|BRCA - Breast invasive adenocarcinoma(100;3.38e-06)|Lung(119;0.000109)|LUSC - Lung squamous cell carcinoma(224;0.000964)|Colorectal(34;0.0132)|COAD - Colon adenocarcinoma(134;0.0928)		CAATGATATTCTTGTGAAACT	0.413000													14	53					0	0	1	0	0
FARP2	9855	broad.mit.edu	37	2	242430942	242430942	+	Missense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr2:242430942G>C	uc002wbi.1	+	24	2752	c.2635G>C	c.(2635-2637)GAG>CAG	p.E879Q		NM_014808	NP_055623	O94887	FARP2_HUMAN	FERM, RhoGEF and pleckstrin domain protein 2	879					axon guidance|neuron remodeling|Rac protein signal transduction|regulation of Rho protein signal transduction	cytoskeleton|cytosol|extrinsic to membrane	cytoskeletal protein binding|Rho guanyl-nucleotide exchange factor activity	p.E879K(1)		upper_aerodigestive_tract(1)|ovary(1)|skin(1)	3		all_cancers(19;4.88e-34)|all_epithelial(40;4.81e-14)|Breast(86;0.000141)|Renal(207;0.0143)|all_lung(227;0.0344)|Lung NSC(271;0.0886)|Ovarian(221;0.0905)|Esophageal squamous(248;0.131)|all_hematologic(139;0.182)|Melanoma(123;0.238)		Epithelial(32;1.81e-33)|all cancers(36;1.61e-30)|OV - Ovarian serous cystadenocarcinoma(60;6.83e-15)|Kidney(56;1.19e-08)|KIRC - Kidney renal clear cell carcinoma(57;8.98e-08)|BRCA - Breast invasive adenocarcinoma(100;1.49e-06)|Lung(119;0.000152)|LUSC - Lung squamous cell carcinoma(224;0.00125)|Colorectal(34;0.0199)|COAD - Colon adenocarcinoma(134;0.121)		ATCCCCCAACGAGGTATCTCT	0.627000													14	40					0	0	1	0	0
SIRPA	140885	broad.mit.edu	37	20	1902277	1902277	+	Nonsense_Mutation	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr20:1902277C>T	uc002wfq.2	+	4	1033	c.673C>T	c.(673-675)CAA>TAA	p.Q225*	SIRPA_uc010zps.1_Nonsense_Mutation_p.Q205*|SIRPA_uc002wfr.2_Nonsense_Mutation_p.Q225*|SIRPA_uc002wfs.2_Nonsense_Mutation_p.Q225*|SIRPA_uc002wft.2_Nonsense_Mutation_p.Q225*	NM_001040022	NP_001035111	P78324	SHPS1_HUMAN	signal-regulatory protein alpha precursor	225	Ig-like C1-type 1.|Extracellular (Potential).				blood coagulation|cell adhesion|cell junction assembly|leukocyte migration	integral to membrane|plasma membrane	SH3 domain binding			ovary(1)	1				Colorectal(46;0.018)|READ - Rectum adenocarcinoma(1;0.0556)		CGTTCACTCTCAAGTCATCTG	0.602000													22	89					0	0	1	0	0
TMC2	117532	broad.mit.edu	37	20	2597898	2597898	+	Silent	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr20:2597898C>G	uc002wgf.1	+	16	2136	c.2121C>G	c.(2119-2121)CTC>CTG	p.L707L	TMC2_uc002wgg.1_Silent_p.L691L	NM_080751	NP_542789	Q8TDI7	TMC2_HUMAN	transmembrane cochlear-expressed protein 2	707	Helical; (Potential).					integral to membrane				ovary(3)	3						TCCTCAGCCTCCTGCCGGTGG	0.617000													18	67					0	0	1	0	0
TMC2	117532	broad.mit.edu	37	20	2621973	2621973	+	Missense_Mutation	SNP	G	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr20:2621973G>T	uc002wgf.1	+	20	2712	c.2697G>T	c.(2695-2697)AAG>AAT	p.K899N	TMC2_uc002wgg.1_Missense_Mutation_p.K883N	NM_080751	NP_542789	Q8TDI7	TMC2_HUMAN	transmembrane cochlear-expressed protein 2	899	Cytoplasmic (Potential).					integral to membrane				ovary(3)	3						CCTCTGGAAAGAGTGCTCAGA	0.577000													12	50					7.03913e-09	7.23136e-09	1	1	0
SIGLEC1	6614	broad.mit.edu	37	20	3686628	3686628	+	Missense_Mutation	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr20:3686628C>T	uc002wja.2	-	3	469	c.469G>A	c.(469-471)GAC>AAC	p.D157N	SIGLEC1_uc002wiz.3_Missense_Mutation_p.D157N|SIGLEC1_uc002wjc.2_Missense_Mutation_p.D68N	NM_023068	NP_075556	Q9BZZ2	SN_HUMAN	sialoadhesin precursor	157	Ig-like C2-type 1.|Extracellular (Potential).				cell-cell adhesion|cell-matrix adhesion|endocytosis|inflammatory response	extracellular region|integral to membrane|plasma membrane	sugar binding			pancreas(4)|ovary(2)|skin(2)|breast(1)|central_nervous_system(1)	10						CAGTTGAAGTCCACCTCTGTG	0.612000													33	126					0	0	1	0	0
CDS2	8760	broad.mit.edu	37	20	5159596	5159596	+	Missense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr20:5159596C>G	uc002wls.2	+	5	780	c.523C>G	c.(523-525)CTA>GTA	p.L175V	CDS2_uc002wlr.1_Missense_Mutation_p.L97V|CDS2_uc010zqt.1_RNA|CDS2_uc002wlu.2_Missense_Mutation_p.L120V|CDS2_uc010zqu.1_Missense_Mutation_p.L55V|CDS2_uc002wlv.2_Missense_Mutation_p.L77V|CDS2_uc010zqv.1_Translation_Start_Site	NM_003818	NP_003809	O95674	CDS2_HUMAN	phosphatidate cytidylyltransferase 2	175	Helical; (Potential).				phospholipid biosynthetic process	integral to membrane|mitochondrial inner membrane	phosphatidate cytidylyltransferase activity				0						TACTCTCTATCTAATAGGTAT	0.408000													5	164					0	0	1	0	0
GPCPD1	56261	broad.mit.edu	37	20	5566870	5566870	+	Missense_Mutation	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr20:5566870G>A	uc002wme.3	-	5	490	c.277C>T	c.(277-279)CAT>TAT	p.H93Y	GPCPD1_uc002wmd.3_5'Flank	NM_019593	NP_062539	Q9NPB8	GPCP1_HUMAN	hypothetical protein LOC56261	93	CBM20.				glycerol metabolic process|lipid metabolic process		carbohydrate binding|glycerophosphodiester phosphodiesterase activity				0						GGTTGTAGATGAGTCTCCCAC	0.378000													4	187					0	0	1	0	0
MCM8	84515	broad.mit.edu	37	20	5974253	5974253	+	Missense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr20:5974253C>G	uc002wmi.2	+	18	2719	c.2342C>G	c.(2341-2343)TCT>TGT	p.S781C	MCM8_uc002wmj.2_Missense_Mutation_p.S765C|MCM8_uc002wmk.2_Missense_Mutation_p.S821C|MCM8_uc002wml.2_Missense_Mutation_p.S781C|MCM8_uc010gbp.2_Missense_Mutation_p.S734C|MCM8_uc002wmm.2_Missense_Mutation_p.S319C	NM_032485	NP_115874	Q9UJA3	MCM8_HUMAN	minichromosome maintenance complex component 8	781					cell cycle checkpoint|DNA strand elongation involved in DNA replication|G1/S transition of mitotic cell cycle|M/G1 transition of mitotic cell cycle|regulation of transcription, DNA-dependent|S phase of mitotic cell cycle|transcription, DNA-dependent	nucleoplasm	ATP binding|DNA binding|nucleoside-triphosphatase activity			skin(1)	1						AGATTTATTTCTGCTCTCAAC	0.368000													25	66					0	0	1	0	0
PLCB4	5332	broad.mit.edu	37	20	9389808	9389808	+	Nonsense_Mutation	SNP	C	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr20:9389808C>A	uc002wnf.2	+	22	2079	c.1943C>A	c.(1942-1944)TCA>TAA	p.S648*	PLCB4_uc010gbw.1_Nonsense_Mutation_p.S648*|PLCB4_uc010gbx.2_Nonsense_Mutation_p.S660*|PLCB4_uc002wne.2_Nonsense_Mutation_p.S648*|PLCB4_uc002wnh.2_Nonsense_Mutation_p.S495*	NM_182797	NP_877949	Q15147	PLCB4_HUMAN	phospholipase C beta 4 isoform b	648	PI-PLC Y-box.				intracellular signal transduction|lipid catabolic process	cytosol	calcium ion binding|phosphatidylinositol phospholipase C activity|protein binding|signal transducer activity			skin(11)|ovary(3)|pancreas(1)	15						CAGATGGTTTCACTGAACTAT	0.498000													16	55					4.7546e-09	4.88687e-09	1	1	0
JAG1	182	broad.mit.edu	37	20	10639291	10639291	+	Silent	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr20:10639291G>A	uc002wnw.2	-	4	1035	c.519C>T	c.(517-519)AAC>AAT	p.N173N		NM_000214	NP_000205	P78504	JAG1_HUMAN	jagged 1 precursor	173	Extracellular (Potential).				angiogenesis|cell communication|cell fate determination|endothelial cell differentiation|hemopoiesis|keratinocyte differentiation|myoblast differentiation|Notch receptor processing|Notch signaling pathway|regulation of cell migration|regulation of cell proliferation	extracellular region|integral to plasma membrane	calcium ion binding|growth factor activity|Notch binding|structural molecule activity			lung(3)|ovary(2)|central_nervous_system(2)|breast(1)|pancreas(1)	9						CAACGCCCGTGTTCTGCTTCA	0.507000									Alagille_Syndrome				23	82					0	0	1	0	0
SEL1L2	80343	broad.mit.edu	37	20	13866043	13866043	+	Missense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr20:13866043G>C	uc010gcf.2	-	10	989	c.907C>G	c.(907-909)CTT>GTT	p.L303V	SEL1L2_uc002woq.3_Missense_Mutation_p.L164V|SEL1L2_uc010zrl.1_Missense_Mutation_p.L303V|SEL1L2_uc002wor.2_RNA	NM_025229	NP_079505	Q5TEA6	SE1L2_HUMAN	sel-1 suppressor of lin-12-like 2 precursor	303	Extracellular (Potential).|Sel1-like 5.					integral to membrane	binding			ovary(2)	2						AATTGTCCAAGAGAGACCTAG	0.363000													5	175					0	0	1	0	0
KIF16B	55614	broad.mit.edu	37	20	16354918	16354918	+	Missense_Mutation	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr20:16354918G>A	uc002wpg.1	-	20	3492	c.3334C>T	c.(3334-3336)CCC>TCC	p.P1112S	KIF16B_uc002wpe.1_Missense_Mutation_p.P494S|KIF16B_uc002wpf.1_Missense_Mutation_p.P494S|KIF16B_uc010gch.1_Intron|KIF16B_uc010gci.1_Missense_Mutation_p.P1112S	NM_024704	NP_078980	Q96L93	KI16B_HUMAN	kinesin-like motor protein C20orf23	1112					cell communication|early endosome to late endosome transport|endoderm development|epidermal growth factor receptor signaling pathway|fibroblast growth factor receptor signaling pathway|formation of primary germ layer|Golgi to endosome transport|microtubule-based movement|receptor catabolic process|regulation of receptor recycling	early endosome membrane|microtubule	ATP binding|phosphatidylinositol-3,4,5-trisphosphate binding|phosphatidylinositol-3,4-bisphosphate binding|phosphatidylinositol-3,5-bisphosphate binding|phosphatidylinositol-3-phosphate binding|plus-end-directed microtubule motor activity			skin(2)|large_intestine(1)|central_nervous_system(1)|lung(1)|breast(1)|ovary(1)|kidney(1)	8						TCCATGAGGGGAACCAGGTGT	0.458000													18	91					0	0	1	0	0
CRNKL1	51340	broad.mit.edu	37	20	20024178	20024178	+	Missense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr20:20024178G>C	uc002wrs.2	-	8	1445	c.1413C>G	c.(1411-1413)ATC>ATG	p.I471M		NM_016652	NP_057736	Q9BZJ0	CRNL1_HUMAN	crooked neck-like 1 protein	471	HAT 8.				spliceosome assembly	catalytic step 2 spliceosome|cytoplasm|nuclear speck	RNA binding			ovary(2)|large_intestine(1)	3						TGCTCACAATGATATCTTCAA	0.418000													46	171					0	0	1	0	0
NINL	22981	broad.mit.edu	37	20	25484703	25484703	+	Missense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr20:25484703C>G	uc002wux.1	-	7	820	c.746G>C	c.(745-747)GGA>GCA	p.G249A	NINL_uc010gdn.1_Missense_Mutation_p.G249A|NINL_uc010gdo.1_Missense_Mutation_p.G89A|NINL_uc010ztf.1_Missense_Mutation_p.G265A	NM_025176	NP_079452	Q9Y2I6	NINL_HUMAN	ninein-like	249	Potential.|EF-hand 4.				G2/M transition of mitotic cell cycle	cytosol|microtubule|microtubule organizing center	calcium ion binding			ovary(2)|pancreas(1)|central_nervous_system(1)|skin(1)	5						TTTGCCGTCTCCGTCTTGATC	0.527000													8	193					0	0	1	0	0
TPX2	22974	broad.mit.edu	37	20	30385276	30385276	+	Missense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr20:30385276C>G	uc002wwp.1	+	16	2601	c.1903C>G	c.(1903-1905)CAG>GAG	p.Q635E	TPX2_uc010gdv.1_Missense_Mutation_p.Q671E	NM_012112	NP_036244	Q9ULW0	TPX2_HUMAN	TPX2, microtubule-associated protein homolog	635					activation of protein kinase activity|apoptosis|cell division|cell proliferation|mitosis|regulation of mitotic spindle organization	cytoplasm|microtubule|nucleus|spindle pole	ATP binding|GTP binding|protein kinase binding			large_intestine(1)|ovary(1)	2			Epithelial(4;0.000771)|Colorectal(19;0.00306)|all cancers(5;0.004)|COAD - Colon adenocarcinoma(19;0.0347)|OV - Ovarian serous cystadenocarcinoma(3;0.0656)			CGTCATCTCTCAGGAGCCCTT	0.458000													56	168					0	0	1	0	0
C20orf134	170487	broad.mit.edu	37	20	32256027	32256027	+	Missense_Mutation	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr20:32256027G>A	uc002wzt.2	+	1	1724	c.724G>A	c.(724-726)GAT>AAT	p.D242N	NECAB3_uc002wzm.3_Intron|NECAB3_uc002wzn.3_Intron|NECAB3_uc002wzo.3_Intron|NECAB3_uc002wzp.3_Intron|NECAB3_uc002wzq.3_Intron|NECAB3_uc002wzr.3_Intron|NECAB3_uc010geo.2_Intron	NM_001024675	NP_001019846	Q5JWF8	CT134_HUMAN	hypothetical protein LOC170487	242										pancreas(1)	1						GCTGCTGTACGATGTGTTCAA	0.612000											OREG0025871	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	23	65					0	0	1	0	0
MAP1LC3A	84557	broad.mit.edu	37	20	33147542	33147542	+	Missense_Mutation	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr20:33147542G>A	uc002xaq.1	+	4	360	c.206G>A	c.(205-207)CGC>CAC	p.R69H	MAP1LC3A_uc002xap.1_Missense_Mutation_p.R73H	NM_032514	NP_115903	Q9H492	MLP3A_HUMAN	microtubule-associated protein 1 light chain 3	69					autophagic vacuole assembly	autophagic vacuole membrane|cytoplasmic vesicle|cytosol|endomembrane system|microtubule	phosphatidylethanolamine binding|protein binding				0						GGCTGCAGGCGCCGCCTGCAG	0.632000													32	111					0	0	1	0	0
ACSS2	55902	broad.mit.edu	37	20	33500927	33500927	+	Missense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr20:33500927C>G	uc002xbd.2	+	3	524	c.403C>G	c.(403-405)CAG>GAG	p.Q135E	ACSS2_uc002xbc.2_Missense_Mutation_p.Q40E|ACSS2_uc010zum.1_Intron|ACSS2_uc010gey.2_Missense_Mutation_p.Q135E|ACSS2_uc002xbe.2_Intron|ACSS2_uc002xbf.2_Intron	NM_018677	NP_061147	Q9NR19	ACSA_HUMAN	acyl-CoA synthetase short-chain family member 2	135					ethanol oxidation|lipid biosynthetic process|xenobiotic metabolic process	cytosol|nucleus	acetate-CoA ligase activity|ATP binding|protein binding				0					Adenosine monophosphate(DB00131)|Adenosine triphosphate(DB00171)	GGAGACCACTCAGATCACATA	0.512000													43	229					0	0	1	0	0
GDF5	8200	broad.mit.edu	37	20	34022041	34022041	+	Missense_Mutation	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr20:34022041C>T	uc002xck.1	-	2	1491	c.1172G>A	c.(1171-1173)CGA>CAA	p.R391Q	GDF5_uc010gfc.1_Missense_Mutation_p.R391Q|uc002xcj.2_Missense_Mutation_p.S151L|GDF5_uc010zvc.1_Missense_Mutation_p.R391Q	NM_000557	NP_000548	P43026	GDF5_HUMAN	growth differentiation factor 5 preproprotein	391					cartilage development|cell-cell signaling|growth|transforming growth factor beta receptor signaling pathway	extracellular space	cytokine activity|growth factor activity				0	Lung NSC(9;0.00642)|all_lung(11;0.0094)		BRCA - Breast invasive adenocarcinoma(18;0.00663)			CTTGCTGGGTCGCTTGCCCTG	0.597000													66	180					0	0	1	0	0
ROMO1	140823	broad.mit.edu	37	20	34287611	34287611	+	Silent	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr20:34287611C>T	uc002xdy.2	+	2	204	c.57C>T	c.(55-57)GTC>GTT	p.V19V	NFS1_uc002xdt.1_5'Flank|NFS1_uc002xdu.1_5'Flank|NFS1_uc002xdv.1_5'Flank|NFS1_uc010zvk.1_5'Flank|NFS1_uc010zvl.1_5'Flank|NFS1_uc002xdw.1_5'Flank|NFS1_uc002xdx.2_5'Flank|ROMO1_uc010gfm.2_Silent_p.V19V	NM_080748	NP_542786	P60602	ROMO1_HUMAN	reactive oxygen species modulator 1	19					cellular response to reactive oxygen species|positive regulation of cell proliferation|positive regulation of reactive oxygen species metabolic process|replicative cell aging	integral to membrane|mitochondrial membrane					0						TCGACCGTGTCAAAATGGGCT	0.667000											OREG0004048	type=REGULATORY REGION|Gene=NFS1|Dataset=Stanford ENCODE Dataset|EvidenceSubtype=Transient transfection luciferase assay	66	211					0	0	1	0	0
C20orf152	140894	broad.mit.edu	37	20	34572654	34572654	+	Missense_Mutation	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr20:34572654G>A	uc002xes.1	+	6	826	c.670G>A	c.(670-672)GAC>AAC	p.D224N	C20orf152_uc002xer.1_Missense_Mutation_p.D224N|C20orf152_uc010gfp.1_RNA			Q96M20	CT152_HUMAN	SubName: Full=C20orf152 protein;	224	cNMP.										0	Breast(12;0.00631)					TAATAAGCTGGACCAGGAAGT	0.453000													33	133					0	0	1	0	0
DLGAP4	22839	broad.mit.edu	37	20	35060247	35060247	+	Missense_Mutation	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr20:35060247G>A	uc002xff.2	+	3	562	c.127G>A	c.(127-129)GAG>AAG	p.E43K	DLGAP4_uc010zvp.1_Missense_Mutation_p.E43K	NM_014902	NP_055717	Q9Y2H0	DLGP4_HUMAN	disks large-associated protein 4 isoform a	43					cell-cell signaling	membrane	protein binding			skin(2)|ovary(1)	3	Breast(12;0.0192)	Myeloproliferative disorder(115;0.00878)				CTTCGCCCGCGAGGCCCGCTT	0.687000													27	73					0	0	1	0	0
PLCG1	5335	broad.mit.edu	37	20	39794458	39794458	+	Silent	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr20:39794458C>G	uc002xjp.1	+	16	1912	c.1791C>G	c.(1789-1791)CTC>CTG	p.L597L	PLCG1_uc002xjo.1_Silent_p.L597L|PLCG1_uc010zwe.1_Silent_p.L223L|PLCG1_uc010ggf.2_5'Flank	NM_182811	NP_877963	P19174	PLCG1_HUMAN	phospholipase C, gamma 1 isoform b	597	SH2 1.				activation of phospholipase C activity|axon guidance|blood coagulation|cellular response to epidermal growth factor stimulus|epidermal growth factor receptor signaling pathway|fibroblast growth factor receptor signaling pathway|interspecies interaction between organisms|intracellular signal transduction|leukocyte migration|nerve growth factor receptor signaling pathway|phospholipid catabolic process|positive regulation of angiogenesis|positive regulation of blood vessel endothelial cell migration|positive regulation of epithelial cell migration|T cell receptor signaling pathway	cytosol|lamellipodium|plasma membrane|ruffle	calcium ion binding|phosphatidylinositol phospholipase C activity|protein binding|receptor signaling protein activity			lung(3)|breast(3)|skin(2)	8		Myeloproliferative disorder(115;0.00878)				ACTACACGCTCTCTTTCTGGT	0.527000													18	87					0	0	1	0	0
CHD6	84181	broad.mit.edu	37	20	40033628	40033628	+	Missense_Mutation	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr20:40033628C>T	uc002xka.1	-	37	7931	c.7753G>A	c.(7753-7755)GAG>AAG	p.E2585K	CHD6_uc002xjz.1_Missense_Mutation_p.E122K	NM_032221	NP_115597	Q8TD26	CHD6_HUMAN	chromodomain helicase DNA binding protein 6	2585					chromatin remodeling|nervous system development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	ATP binding|ATP-dependent helicase activity|chromatin binding|DNA binding			ovary(6)|skin(5)|lung(2)|central_nervous_system(1)	14		Myeloproliferative disorder(115;0.00425)				GGCTTGTCCTCAGCTAAAGTG	0.473000													30	127					0	0	1	0	0
RIMS4	140730	broad.mit.edu	37	20	43438835	43438835	+	Silent	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr20:43438835G>A	uc002xms.2	-	1	78	c.78C>T	c.(76-78)TCC>TCT	p.S26S	RIMS4_uc010ggu.2_Silent_p.S26S	NM_182970	NP_892015	Q9H426	RIMS4_HUMAN	regulating synaptic membrane exocytosis 4	26					exocytosis|neurotransmitter transport	cell junction|synapse				ovary(4)|central_nervous_system(1)	5		Myeloproliferative disorder(115;0.0122)				CGTCGTCGAAGGAGTTCATGC	0.632000													9	8					0	0	1	0	0
SYS1	90196	broad.mit.edu	37	20	43995671	43995671	+	Silent	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr20:43995671C>T	uc002xnv.2	+	4	645	c.387C>T	c.(385-387)CTC>CTT	p.L129L	SYS1_uc010gha.2_RNA|SYS1_uc002xnw.1_Intron|SYS1-DBNDD2_uc002xnx.2_Intron	NM_033542	NP_291020	Q8N2H4	SYS1_HUMAN	SYS1 Golgi-localized integral membrane protein	129	Helical; (Potential).				protein transport	Golgi membrane|integral to membrane				skin(1)	1		Myeloproliferative disorder(115;0.0122)				GCATTGCACTCATGGCTGTCA	0.567000													21	119					0	0	1	0	0
SLC35C2	51006	broad.mit.edu	37	20	44980847	44980847	+	Missense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr20:44980847G>C	uc002xro.2	-	8	1221	c.680C>G	c.(679-681)TCT>TGT	p.S227C	SLC35C2_uc002xrp.2_Missense_Mutation_p.S206C|SLC35C2_uc002xrq.2_Missense_Mutation_p.S227C|SLC35C2_uc002xrr.2_Missense_Mutation_p.S227C|SLC35C2_uc010zxn.1_Missense_Mutation_p.S92C|SLC35C2_uc010zxo.1_Missense_Mutation_p.S113C|SLC35C2_uc010zxp.1_Missense_Mutation_p.S256C	NM_173179	NP_775271	Q9NQQ7	S35C2_HUMAN	solute carrier family 35, member C2 isoform a	227					transport	integral to membrane				ovary(1)	1		Myeloproliferative disorder(115;0.0122)				GATTTTCTCAGATGTGGACAA	0.572000													28	114					0	0	1	0	0
ZNF334	55713	broad.mit.edu	37	20	45131502	45131502	+	Missense_Mutation	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr20:45131502C>T	uc002xsc.2	-	5	660	c.476G>A	c.(475-477)AGA>AAA	p.R159K	ZNF334_uc002xsa.2_Missense_Mutation_p.R182K|ZNF334_uc002xsb.2_Missense_Mutation_p.R121K|ZNF334_uc002xsd.2_Missense_Mutation_p.R121K|ZNF334_uc010ghl.2_Missense_Mutation_p.R158K	NM_018102	NP_060572	Q9HCZ1	ZN334_HUMAN	zinc finger protein 334 isoform a	159					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)|pancreas(1)	2		Myeloproliferative disorder(115;0.0122)				AGGAATCTTTCTGTTTTCTTT	0.353000													25	103					0	0	1	0	0
ARFGEF2	10564	broad.mit.edu	37	20	47630387	47630387	+	Missense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr20:47630387G>C	uc002xtx.3	+	30	4221	c.4069G>C	c.(4069-4071)GAG>CAG	p.E1357Q	ARFGEF2_uc010zyf.1_Missense_Mutation_p.E650Q	NM_006420	NP_006411	Q9Y6D5	BIG2_HUMAN	ADP-ribosylation factor guanine	1357					exocytosis|intracellular signal transduction|regulation of ARF protein signal transduction	cytosol|Golgi membrane	ARF guanyl-nucleotide exchange factor activity			breast(3)|upper_aerodigestive_tract(1)	4			BRCA - Breast invasive adenocarcinoma(12;0.00148)|Colorectal(8;0.198)			AGTCATGTTTGAGATCATGAA	0.473000													4	109					0	0	1	0	0
ARFGEF2	10564	broad.mit.edu	37	20	47649562	47649562	+	Missense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr20:47649562C>G	uc002xtx.3	+	39	5336	c.5184C>G	c.(5182-5184)TTC>TTG	p.F1728L	ARFGEF2_uc010zyf.1_Missense_Mutation_p.F1021L	NM_006420	NP_006411	Q9Y6D5	BIG2_HUMAN	ADP-ribosylation factor guanine	1728					exocytosis|intracellular signal transduction|regulation of ARF protein signal transduction	cytosol|Golgi membrane	ARF guanyl-nucleotide exchange factor activity			breast(3)|upper_aerodigestive_tract(1)	4			BRCA - Breast invasive adenocarcinoma(12;0.00148)|Colorectal(8;0.198)			ACCTCAAGTTCAAAGCACATG	0.403000													13	59					0	0	1	0	0
CSE1L	1434	broad.mit.edu	37	20	47691354	47691354	+	Missense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr20:47691354G>C	uc002xty.2	+	11	1233	c.1099G>C	c.(1099-1101)GAG>CAG	p.E367Q	CSE1L_uc010zyg.1_Missense_Mutation_p.E150Q|CSE1L_uc010ghx.2_Missense_Mutation_p.E311Q|CSE1L_uc010ghy.2_Missense_Mutation_p.E16Q|CSE1L_uc010zyh.1_Missense_Mutation_p.E16Q	NM_001316	NP_001307	P55060	XPO2_HUMAN	CSE1 chromosome segregation 1-like protein	367					apoptosis|cell proliferation|intracellular protein transport	cytoplasm|nucleus	importin-alpha export receptor activity			large_intestine(1)|skin(1)	2			BRCA - Breast invasive adenocarcinoma(12;0.000491)|Colorectal(8;0.198)			AGATAATTCTGAGGAGTACAT	0.388000													10	53					0	0	1	0	0
ZNFX1	57169	broad.mit.edu	37	20	47870271	47870271	+	Missense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr20:47870271C>G	uc002xui.2	-	11	3284	c.3037G>C	c.(3037-3039)GAG>CAG	p.E1013Q		NM_021035	NP_066363	Q9P2E3	ZNFX1_HUMAN	zinc finger, NFX1-type containing 1	1013							metal ion binding			ovary(2)	2			BRCA - Breast invasive adenocarcinoma(12;0.00173)|COAD - Colon adenocarcinoma(4;0.14)|Colorectal(8;0.166)			GTATGGGCCTCAAGGACTTCC	0.517000													87	235					0	0	1	0	0
ATP9A	10079	broad.mit.edu	37	20	50234087	50234087	+	Missense_Mutation	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr20:50234087C>T	uc002xwg.1	-	22	2357	c.2357G>A	c.(2356-2358)GGA>GAA	p.G786E	ATP9A_uc010gih.1_Missense_Mutation_p.G650E|ATP9A_uc002xwf.1_Intron	NM_006045	NP_006036	O75110	ATP9A_HUMAN	ATPase, class II, type 9A	786	Cytoplasmic (Potential).				ATP biosynthetic process	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|magnesium ion binding|phospholipid-translocating ATPase activity			ovary(4)	4						GTCATTGCCTCCGTCCCCTGC	0.502000													3	21					0	0	1	0	0
TSHZ2	128553	broad.mit.edu	37	20	51872272	51872272	+	Missense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr20:51872272G>C	uc002xwo.2	+	2	3231	c.2275G>C	c.(2275-2277)GAG>CAG	p.E759Q		NM_173485	NP_775756	Q9NRE2	TSH2_HUMAN	teashirt zinc finger homeobox 2	759					multicellular organismal development	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(5)|haematopoietic_and_lymphoid_tissue(1)	6			STAD - Stomach adenocarcinoma(23;0.1)			CTACCTGTTTGAGAACAGCGA	0.522000													20	102					0	0	1	0	0
DOK5	55816	broad.mit.edu	37	20	53226988	53226988	+	Missense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr20:53226988C>G	uc002xwy.2	+	6	881	c.661C>G	c.(661-663)CAG>GAG	p.Q221E	DOK5_uc010gin.2_Missense_Mutation_p.Q113E|DOK5_uc002xwz.2_Missense_Mutation_p.Q83E	NM_018431	NP_060901	Q9P104	DOK5_HUMAN	docking protein 5	221	IRS-type PTB.						insulin receptor binding			ovary(1)	1			Colorectal(105;0.202)			GGCCATCTATCAGAAAGTCCA	0.488000													28	100					0	0	1	0	0
AURKA	6790	broad.mit.edu	37	20	54945266	54945266	+	Missense_Mutation	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr20:54945266G>A	uc002xxd.1	-	11	1726	c.1160C>T	c.(1159-1161)TCA>TTA	p.S387L	AURKA_uc002xxe.1_Missense_Mutation_p.S387L|AURKA_uc002xxf.1_Missense_Mutation_p.S387L|AURKA_uc002xxg.1_Missense_Mutation_p.S387L|AURKA_uc002xxh.1_Missense_Mutation_p.S387L|AURKA_uc002xxi.1_Missense_Mutation_p.S387L|AURKA_uc002xxj.1_Missense_Mutation_p.S387L|AURKA_uc002xxk.1_Missense_Mutation_p.S387L|AURKA_uc010zzd.1_RNA	NM_198433	NP_940835	O14965	AURKA_HUMAN	serine/threonine protein kinase 6	387					anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|cell division|mitosis|phosphatidylinositol-mediated signaling|regulation of protein stability|spindle organization	cytosol|nucleus|perinuclear region of cytoplasm|spindle microtubule|spindle pole centrosome	ATP binding|protein kinase binding|protein serine/threonine kinase activity			lung(3)|ovary(2)|breast(1)|large_intestine(1)|skin(1)	8			Colorectal(105;0.202)			TGGTTTTGATGAATTTGCTGT	0.473000													40	155					0	0	1	0	0
CTSZ	1522	broad.mit.edu	37	20	57570797	57570797	+	Silent	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr20:57570797C>T	uc002yai.2	-	6	945	c.819G>A	c.(817-819)CTG>CTA	p.L273L		NM_001336	NP_001327	Q9UBR2	CATZ_HUMAN	cathepsin Z preproprotein	273					proteolysis	endoplasmic reticulum|extracellular space|lysosome	cysteine-type endopeptidase activity			kidney(1)	1	all_lung(29;0.00711)		Colorectal(105;0.109)			TCACGATCCTCAGCCAGCCTC	0.617000													8	44					0	0	1	0	0
ZNF831	128611	broad.mit.edu	37	20	57768813	57768813	+	Silent	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr20:57768813C>T	uc002yan.2	+	1	2739	c.2739C>T	c.(2737-2739)CCC>CCT	p.P913P		NM_178457	NP_848552	Q5JPB2	ZN831_HUMAN	zinc finger protein 831	913						intracellular	nucleic acid binding|zinc ion binding			skin(13)|ovary(1)	14	all_lung(29;0.0085)					CCCCAGCCCCCGCAGAGCACC	0.632000													18	72					0	0	1	0	0
TAF4	6874	broad.mit.edu	37	20	60575694	60575694	+	Missense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr20:60575694G>C	uc002ybs.2	-	10	2570	c.2570C>G	c.(2569-2571)TCT>TGT	p.S857C		NM_003185	NP_003176	O00268	TAF4_HUMAN	TBP-associated factor 4	857					interspecies interaction between organisms|positive regulation of transcription, DNA-dependent|transcription elongation from RNA polymerase II promoter|transcription initiation from RNA polymerase II promoter|viral reproduction	cytoplasm|MLL1 complex|transcription factor TFIID complex|transcription factor TFTC complex	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity|transcription coactivator activity			ovary(2)|pancreas(1)	3	Breast(26;1e-08)		BRCA - Breast invasive adenocarcinoma(19;3.1e-07)			CACCAATTCAGAGTTCGTGGC	0.443000													24	111					0	0	1	0	0
ADRM1	11047	broad.mit.edu	37	20	60881738	60881738	+	Missense_Mutation	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr20:60881738G>A	uc002ycn.2	+	5	569	c.489G>A	c.(487-489)ATG>ATA	p.M163I	ADRM1_uc002yco.2_Missense_Mutation_p.M163I|ADRM1_uc002ycp.1_RNA	NM_007002	NP_008933	Q16186	ADRM1_HUMAN	adhesion regulating molecule 1 precursor	163	Gly-rich.				proteasome assembly|transcription elongation from RNA polymerase II promoter	cytoplasm|integral to plasma membrane|membrane fraction|nucleus|proteasome complex	endopeptidase activator activity|protease binding|proteasome binding				0	Breast(26;7.76e-09)		BRCA - Breast invasive adenocarcinoma(19;2.51e-06)			TGGGAAACATGAGCCACAGCC	0.667000													6	20					0	0	1	0	0
DIDO1	11083	broad.mit.edu	37	20	61511608	61511608	+	Silent	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr20:61511608C>G	uc002ydr.1	-	16	5964	c.5700G>C	c.(5698-5700)CTG>CTC	p.L1900L	DIDO1_uc002yds.1_Silent_p.L1900L	NM_033081	NP_149072	Q9BTC0	DIDO1_HUMAN	death inducer-obliterator 1 isoform c	1900	Pro-rich.				apoptosis|transcription, DNA-dependent	cytoplasm|nucleus	zinc ion binding			ovary(3)|skin(3)	6	Breast(26;5.68e-08)					GGGGGCCTTTCAGCTGAGACA	0.637000													6	120					0	0	1	0	0
KCNQ2	3785	broad.mit.edu	37	20	62071057	62071057	+	Missense_Mutation	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr20:62071057G>A	uc002yey.1	-	6	998	c.821C>T	c.(820-822)ACG>ATG	p.T274M	KCNQ2_uc002yez.1_Missense_Mutation_p.T274M|KCNQ2_uc002yfa.1_Missense_Mutation_p.T274M|KCNQ2_uc002yfb.1_Missense_Mutation_p.T274M|KCNQ2_uc011aax.1_Missense_Mutation_p.T274M|KCNQ2_uc002yfc.1_Missense_Mutation_p.T274M	NM_172107	NP_742105	O43526	KCNQ2_HUMAN	potassium voltage-gated channel KQT-like protein	274					axon guidance|synaptic transmission	voltage-gated potassium channel complex	voltage-gated potassium channel activity	p.T274M(1)		upper_aerodigestive_tract(1)|ovary(1)	2	all_cancers(38;1.24e-11)		BRCA - Breast invasive adenocarcinoma(10;1.04e-05)		Amitriptyline(DB00321)	GGTGGTCAGCGTGATCTGTGG	0.647000													22	69					0	0	1	0	0
PRIC285	85441	broad.mit.edu	37	20	62198468	62198468	+	Missense_Mutation	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr20:62198468G>A	uc002yfm.2	-	7	3135	c.2243C>T	c.(2242-2244)GCC>GTC	p.A748V	PRIC285_uc002yfl.1_Missense_Mutation_p.A179V	NM_001037335	NP_001032412	Q9BYK8	PR285_HUMAN	PPAR-alpha interacting complex protein 285	748					cellular lipid metabolic process|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleoplasm	ATP binding|DNA binding|helicase activity|ribonuclease activity|RNA binding|transcription coactivator activity|zinc ion binding			central_nervous_system(2)	2	all_cancers(38;2.51e-11)|all_epithelial(29;8.27e-13)		Epithelial(9;1.27e-08)|all cancers(9;7.32e-08)|BRCA - Breast invasive adenocarcinoma(10;5.15e-06)			GCTGACAATGGCGTCCGTGCA	0.657000													27	99					0	0	1	0	0
ZNF512B	57473	broad.mit.edu	37	20	62598313	62598313	+	Silent	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr20:62598313C>G	uc002yhl.1	-	4	363	c.309G>C	c.(307-309)TCG>TCC	p.S103S		NM_020713	NP_065764	Q96KM6	Z512B_HUMAN	zinc finger protein 512B	103					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0	all_cancers(38;2.14e-11)|all_epithelial(29;3.41e-13)|Lung NSC(23;3.41e-09)|all_lung(23;1.06e-08)					ACTTCACCCTCGAGTGTGCCT	0.602000													5	96					0	0	1	0	0
TPTE	7179	broad.mit.edu	37	21	10933862	10933862	+	Missense_Mutation	SNP	T	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr21:10933862T>A	uc002yip.1	-	17	1385	c.1017A>T	c.(1015-1017)AAA>AAT	p.K339N	TPTE_uc002yis.1_RNA|TPTE_uc002yiq.1_Missense_Mutation_p.K321N|TPTE_uc002yir.1_Missense_Mutation_p.K301N|TPTE_uc010gkv.1_Missense_Mutation_p.K201N	NM_199261	NP_954870	P56180	TPTE_HUMAN	transmembrane phosphatase with tensin homology	339	Phosphatase tensin-type.				signal transduction	integral to membrane	ion channel activity|protein tyrosine phosphatase activity|protein tyrosine/serine/threonine phosphatase activity			ovary(2)|lung(1)|breast(1)|skin(1)	5			Colorectal(6;3.44e-05)|COAD - Colon adenocarcinoma(6;0.00727)|READ - Rectum adenocarcinoma(6;0.0723)	UCEC - Uterine corpus endometrioid carcinoma (6;0.0974)|all cancers(6;2.54e-22)|Epithelial(6;4.21e-19)|OV - Ovarian serous cystadenocarcinoma(6;1.16e-09)|BRCA - Breast invasive adenocarcinoma(6;7.72e-05)|Lung(8;0.000189)|LUSC - Lung squamous cell carcinoma(6;0.00379)|GBM - Glioblastoma multiforme(6;0.00391)|Kidney(17;0.0773)|LUAD - Lung adenocarcinoma(8;0.247)		CTGTGCCTCCTTTACAGTGAA	0.323000													35	327					0	0	1	0	0
NCAM2	4685	broad.mit.edu	37	21	22707864	22707864	+	Missense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr21:22707864G>C	uc002yld.1	+	7	1026	c.777G>C	c.(775-777)TTG>TTC	p.L259F	NCAM2_uc011acb.1_Missense_Mutation_p.L117F|NCAM2_uc011acc.1_Missense_Mutation_p.L284F	NM_004540	NP_004531	O15394	NCAM2_HUMAN	neural cell adhesion molecule 2 precursor	259	Ig-like C2-type 3.|Extracellular (Potential).				neuron cell-cell adhesion	integral to membrane|plasma membrane				ovary(4)	4		Lung NSC(9;0.195)		all cancers(11;0.00102)|OV - Ovarian serous cystadenocarcinoma(11;0.00121)|Epithelial(23;0.00147)|Colorectal(24;0.174)		AGTACATATTGAAAGGGAGCA	0.378000													11	41					0	0	1	0	0
ATP5J	522	broad.mit.edu	37	21	27102096	27102096	+	Nonsense_Mutation	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr21:27102096G>A	uc002yls.2	-	2	683	c.10C>T	c.(10-12)CAG>TAG	p.Q4*	ATP5J_uc002ylt.2_Nonsense_Mutation_p.Q4*|ATP5J_uc002ylu.2_Nonsense_Mutation_p.Q4*|ATP5J_uc002ylv.2_Nonsense_Mutation_p.Q12*|ATP5J_uc002ylw.2_Nonsense_Mutation_p.Q4*	NM_001685	NP_001676	P18859	ATP5J_HUMAN	ATP synthase, H+ transporting, mitochondrial F0	4					ATP catabolic process|respiratory electron transport chain		hydrogen ion transmembrane transporter activity				0						AAGAGCCTCTGAAGAATCATG	0.383000													8	24					0	0	1	0	0
GRIK1	2897	broad.mit.edu	37	21	31045341	31045341	+	Missense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr21:31045341C>G	uc002yno.1	-	4	1152	c.688G>C	c.(688-690)GAT>CAT	p.D230H	GRIK1_uc002ynn.2_Missense_Mutation_p.D230H|GRIK1_uc011acs.1_Missense_Mutation_p.D230H|GRIK1_uc011act.1_Missense_Mutation_p.D174H|GRIK1_uc010glq.1_Missense_Mutation_p.D88H|GRIK1_uc002ynr.2_Missense_Mutation_p.D230H	NM_000830	NP_000821	P39086	GRIK1_HUMAN	glutamate receptor, ionotropic, kainate 1	230	Extracellular (Potential).				central nervous system development|synaptic transmission	cell junction|postsynaptic membrane	kainate selective glutamate receptor activity			large_intestine(1)|ovary(1)|skin(1)	3					L-Glutamic Acid(DB00142)|Topiramate(DB00273)	TGTGAACAATCAAATATCACA	0.398000													51	220					0	0	1	0	0
SYNJ1	8867	broad.mit.edu	37	21	34072413	34072413	+	Missense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr21:34072413C>G	uc002yqh.2	-	4	331	c.331G>C	c.(331-333)GAT>CAT	p.D111H	SYNJ1_uc011ads.1_Missense_Mutation_p.D72H|SYNJ1_uc002yqf.2_Missense_Mutation_p.D72H|SYNJ1_uc002yqg.2_Missense_Mutation_p.D72H|SYNJ1_uc002yqi.2_Missense_Mutation_p.D111H	NM_003895	NP_003886	O43426	SYNJ1_HUMAN	synaptojanin 1 isoform a	72							inositol-polyphosphate 5-phosphatase activity|nucleotide binding|phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity|RNA binding			ovary(4)|skin(1)	5						AACATAGTATCACCTGCAAAA	0.343000													3	91					0	0	1	0	0
IFNAR2	3455	broad.mit.edu	37	21	34635482	34635482	+	Missense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr21:34635482G>C	uc002yrd.2	+	9	1553	c.1225G>C	c.(1225-1227)GAG>CAG	p.E409Q	IFNAR2_uc002yre.2_Missense_Mutation_p.E409Q|IFNAR2_uc002yrf.2_3'UTR|IL10RB_uc002yrh.1_Intron|IL10RB_uc002yri.1_Intron	NM_207585	NP_997468	P48551	INAR2_HUMAN	interferon alpha/beta receptor 2 isoform a	409	Cytoplasmic (Potential).				JAK-STAT cascade|regulation of type I interferon-mediated signaling pathway|response to interferon-alpha|response to virus|type I interferon-mediated signaling pathway	extracellular region|extracellular space|integral to plasma membrane	protein kinase binding|type I interferon binding|type I interferon receptor activity				0					Interferon Alfa-2a, Recombinant(DB00034)|Interferon Alfa-2b, Recombinant(DB00105)|Interferon alfa-n1(DB00011)|Interferon alfa-n3(DB00018)|Interferon alfacon-1(DB00069)|Interferon beta-1b(DB00068)|Peginterferon alfa-2a(DB00008)|Peginterferon alfa-2b(DB00022)	TTTTCCCGAAGAGGACTACAG	0.537000													10	249					0	0	1	0	0
SON	6651	broad.mit.edu	37	21	34925697	34925697	+	Missense_Mutation	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr21:34925697C>T	uc002yse.1	+	3	4209	c.4160C>T	c.(4159-4161)TCG>TTG	p.S1387L	SON_uc002ysb.1_Missense_Mutation_p.S1387L|SON_uc002ysc.2_Missense_Mutation_p.S1387L|SON_uc002ysd.2_Missense_Mutation_p.S378L|SON_uc002ysf.1_Intron|SON_uc002ysg.2_Missense_Mutation_p.S378L	NM_138927	NP_620305	P18583	SON_HUMAN	SON DNA-binding protein isoform F	1387	4 X 8 AA tandem repeats of V-L-E-SS- [AVT]-VT.				anti-apoptosis|cytokinesis|mRNA processing|regulation of cell cycle|regulation of RNA splicing|RNA splicing|spindle pole body separation	nuclear speck	DNA binding|double-stranded RNA binding			ovary(4)|skin(2)	6						CTGGAGCCTTCGGTTGTGACT	0.557000													44	66					0	0	1	0	0
ITSN1	6453	broad.mit.edu	37	21	35147123	35147123	+	Missense_Mutation	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr21:35147123G>A	uc002yta.1	+	13	1664	c.1396G>A	c.(1396-1398)GAG>AAG	p.E466K	DONSON_uc002ysn.1_Intron|ITSN1_uc002yth.3_RNA|ITSN1_uc002ysz.2_Missense_Mutation_p.E466K|ITSN1_uc010gmg.2_Missense_Mutation_p.E429K|ITSN1_uc010gmh.2_RNA|ITSN1_uc002ysw.2_Missense_Mutation_p.E466K|ITSN1_uc010gmi.2_Missense_Mutation_p.E429K|ITSN1_uc010gmj.2_Missense_Mutation_p.E350K|ITSN1_uc002ysy.2_Missense_Mutation_p.E466K|ITSN1_uc002ysx.2_Missense_Mutation_p.E429K|ITSN1_uc002ytb.1_Missense_Mutation_p.E466K|ITSN1_uc002ytc.1_Missense_Mutation_p.E466K|ITSN1_uc002ytd.2_RNA|ITSN1_uc010gmk.2_Missense_Mutation_p.E429K|ITSN1_uc010gml.2_RNA|ITSN1_uc002ytj.2_Missense_Mutation_p.E466K|ITSN1_uc010gmm.1_RNA|ITSN1_uc002yte.2_Missense_Mutation_p.E400K	NM_003024	NP_003015	Q15811	ITSN1_HUMAN	intersectin 1 isoform ITSN-l	466	Potential.|KLERQ.				apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction|synaptic vesicle endocytosis	cell junction|coated pit|cytosol|lamellipodium|synapse|synaptosome	calcium ion binding|proline-rich region binding|protein complex scaffold|Rho guanyl-nucleotide exchange factor activity			ovary(3)|skin(1)	4						CAAAGAACAAGAGGACATAGT	0.368000													20	67					0	0	1	0	0
DOPEY2	9980	broad.mit.edu	37	21	37642322	37642322	+	Missense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr21:37642322G>C	uc002yvg.2	+	27	5578	c.5499G>C	c.(5497-5499)CAG>CAC	p.Q1833H	DOPEY2_uc011aeb.1_Missense_Mutation_p.Q1782H	NM_005128	NP_005119	Q9Y3R5	DOP2_HUMAN	pad-1-like	1833					endoplasmic reticulum organization|Golgi to endosome transport|multicellular organismal development|protein transport	Golgi membrane				ovary(1)|central_nervous_system(1)	2						AAATCACTCAGAAAATCCTAG	0.413000													48	200					0	0	1	0	0
DYRK1A	1859	broad.mit.edu	37	21	38884574	38884574	+	Missense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr21:38884574C>G	uc002ywk.2	+	11	2107	c.2032C>G	c.(2032-2034)CAG>GAG	p.Q678E	DYRK1A_uc002ywi.2_3'UTR|DYRK1A_uc002ywj.2_Missense_Mutation_p.Q669E|DYRK1A_uc002ywl.2_3'UTR|DYRK1A_uc002ywm.2_3'UTR|DYRK1A_uc011aei.1_Missense_Mutation_p.Q439E	NM_001396	NP_001387	Q13627	DYR1A_HUMAN	dual-specificity tyrosine-(Y)-phosphorylation	678					nervous system development|peptidyl-tyrosine phosphorylation|protein autophosphorylation	nuclear speck	ATP binding|non-membrane spanning protein tyrosine kinase activity|protein binding|protein self-association|protein serine/threonine kinase activity			ovary(2)|lung(1)|breast(1)	4						CCAAGGCAATCAGGCCTACCA	0.507000													23	77					0	0	1	0	0
BRWD1	54014	broad.mit.edu	37	21	40667817	40667817	+	Missense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr21:40667817C>G	uc002yxk.1	-	7	600	c.461G>C	c.(460-462)CGA>CCA	p.R154P	BRWD1_uc002yxl.2_Missense_Mutation_p.R154P	NM_018963	NP_061836	Q9NSI6	BRWD1_HUMAN	bromodomain and WD repeat domain containing 1	154					regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus				skin(3)|ovary(1)	4		Prostate(19;8.44e-08)|all_epithelial(19;0.223)				TTGTTTTCCTCGATGTATCTC	0.358000													14	60					0	0	1	0	0
DSCAM	1826	broad.mit.edu	37	21	41719645	41719645	+	Missense_Mutation	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr21:41719645G>A	uc002yyq.1	-	6	1614	c.1162C>T	c.(1162-1164)CGC>TGC	p.R388C	DSCAM_uc002yyr.1_RNA	NM_001389	NP_001380	O60469	DSCAM_HUMAN	Down syndrome cell adhesion molecule isoform	388	Extracellular (Potential).|Ig-like C2-type 4.				cell adhesion|dendrite self-avoidance|negative regulation of cell adhesion|positive regulation of axon extension involved in axon guidance|positive regulation of phosphorylation	axon|extracellular region|growth cone|integral to plasma membrane|membrane fraction	protein binding			ovary(6)|skin(4)|upper_aerodigestive_tract(1)	11		all_cancers(19;0.186)|Prostate(19;1.15e-05)|all_epithelial(19;0.0103)				TTGTCCTTGCGCACAAAGCAC	0.507000													8	340					0	0	1	0	0
TFF3	7033	broad.mit.edu	37	21	43735589	43735589	+	Missense_Mutation	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr21:43735589G>A	uc002zav.2	-	1	118	c.46C>T	c.(46-48)CCC>TCC	p.P16S		NM_003226	NP_003217	Q07654	TFF3_HUMAN	trefoil factor 3 precursor	Error:Variant_position_missing_in_Q07654_after_alignment					defense response|digestion	apical lamina of hyaline layer				skin(1)	1						TTTGCTTGGGGAAGGCTCTCC	0.567000													39	147					0	0	1	0	0
PKNOX1	5316	broad.mit.edu	37	21	44430227	44430227	+	Missense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr21:44430227G>C	uc002zcq.1	+	4	432	c.244G>C	c.(244-246)GAA>CAA	p.E82Q	PKNOX1_uc002zcp.1_Missense_Mutation_p.E82Q|PKNOX1_uc011aex.1_Intron|PKNOX1_uc002zcr.2_Missense_Mutation_p.E82Q	NM_004571	NP_004562	P55347	PKNX1_HUMAN	PBX/knotted 1 homeobox 1	82							sequence-specific DNA binding			large_intestine(2)	2						ACAGGGCTCTGAAGGCACAAC	0.363000													15	76					0	0	1	0	0
PKNOX1	5316	broad.mit.edu	37	21	44430251	44430251	+	Missense_Mutation	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr21:44430251G>A	uc002zcq.1	+	4	456	c.268G>A	c.(268-270)GAT>AAT	p.D90N	PKNOX1_uc002zcp.1_Missense_Mutation_p.D90N|PKNOX1_uc011aex.1_Intron|PKNOX1_uc002zcr.2_Missense_Mutation_p.D90N	NM_004571	NP_004562	P55347	PKNX1_HUMAN	PBX/knotted 1 homeobox 1	90							sequence-specific DNA binding			large_intestine(2)	2						TGCCAGTTTTGATGTAGACAT	0.343000													8	59					0	0	1	0	0
PKNOX1	5316	broad.mit.edu	37	21	44430276	44430276	+	Missense_Mutation	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr21:44430276G>A	uc002zcq.1	+	4	481	c.293G>A	c.(292-294)AGA>AAA	p.R98K	PKNOX1_uc002zcp.1_Missense_Mutation_p.R98K|PKNOX1_uc011aex.1_Intron|PKNOX1_uc002zcr.2_Missense_Mutation_p.R98K	NM_004571	NP_004562	P55347	PKNX1_HUMAN	PBX/knotted 1 homeobox 1	98							sequence-specific DNA binding			large_intestine(2)	2						AATTTTGTAAGAAAGCAAGAG	0.313000													5	51					0	0	1	0	0
PFKL	5211	broad.mit.edu	37	21	45736150	45736150	+	Silent	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr21:45736150G>A	uc002zel.2	+	8	830	c.771G>A	c.(769-771)CTG>CTA	p.L257L	PFKL_uc002zek.2_Silent_p.L304L	NM_002626	NP_002617	P17858	K6PL_HUMAN	liver phosphofructokinase	257					fructose 6-phosphate metabolic process|glycolysis|protein oligomerization	6-phosphofructokinase complex	6-phosphofructokinase activity|ATP binding|fructose-6-phosphate binding|identical protein binding|kinase binding|metal ion binding				0				Colorectal(79;0.0811)		GGTCCCGACTGAACATCATCA	0.652000													25	106					0	0	1	0	0
C21orf29	54084	broad.mit.edu	37	21	45929254	45929254	+	Missense_Mutation	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr21:45929254C>T	uc002zfe.1	-	10	1648	c.1582G>A	c.(1582-1584)GAC>AAC	p.D528N	C21orf29_uc010gpv.1_Missense_Mutation_p.D460N	NM_144991	NP_659428	Q8WU66	TSEAR_HUMAN	chromosome 21 open reading frame 29 precursor	528	EAR 5.				cell adhesion	extracellular region	structural molecule activity				0						ACCTCCCAGTCTGCAGCACCG	0.403000													7	37					0	0	1	0	0
LSS	4047	broad.mit.edu	37	21	47639401	47639401	+	Silent	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr21:47639401G>A	uc002zij.2	-	6	715	c.636C>T	c.(634-636)TTC>TTT	p.F212F	LSS_uc011afv.1_Silent_p.F201F|LSS_uc002zil.2_Silent_p.F212F|LSS_uc002zik.2_Silent_p.F132F	NM_001001438	NP_001001438	P48449	ERG7_HUMAN	lanosterol synthase isoform 1	212					cholesterol biosynthetic process	endoplasmic reticulum membrane	lanosterol synthase activity				0	Breast(49;0.214)					ACATCTCTGGGAACAGGGTAT	0.592000													7	49					0	0	1	0	0
CECR2	27443	broad.mit.edu	37	22	18021987	18021987	+	Missense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr22:18021987C>G	uc010gqw.1	+	15	2215	c.2089C>G	c.(2089-2091)CAG>GAG	p.Q697E	CECR2_uc010gqv.1_Missense_Mutation_p.Q556E|CECR2_uc002zml.2_Missense_Mutation_p.Q556E	NM_031413	NP_113601	Q9BXF3	CECR2_HUMAN	cat eye syndrome chromosome region, candidate 2	739					chromatin modification|cytokinesis|cytoskeleton organization|DNA fragmentation involved in apoptotic nuclear change|vesicle-mediated transport		protein binding			ovary(1)|skin(1)	2		all_epithelial(15;0.139)		Lung(27;0.146)		TGGCCCAAGTCAGGATGGAAG	0.587000													8	19					0	0	1	0	0
DGCR6	8214	broad.mit.edu	37	22	18893924	18893924	+	Missense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr22:18893924G>C	uc002zoh.3	+	1	189	c.37G>C	c.(37-39)GAC>CAC	p.D13H	DGCR6_uc002zog.2_Intron|DGCR6_uc002zoi.3_RNA	NM_005675	NP_005666	Q14129	DGCR6_HUMAN	DiGeorge syndrome critical region protein 6	13					cell adhesion|organ morphogenesis	nucleus|proteinaceous extracellular matrix				upper_aerodigestive_tract(1)|central_nervous_system(1)	2						GGAGGTGGCGGACGGTGCCCG	0.622000													3	3					0	0	1	0	0
HIRA	7290	broad.mit.edu	37	22	19349384	19349384	+	Missense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr22:19349384C>G	uc002zpf.1	-	16	2066	c.1846G>C	c.(1846-1848)GAG>CAG	p.E616Q	HIRA_uc011agx.1_Missense_Mutation_p.E482Q|HIRA_uc010grn.1_Intron|HIRA_uc010gro.1_Missense_Mutation_p.E572Q|HIRA_uc010grp.2_RNA	NM_003325	NP_003316	P54198	HIRA_HUMAN	HIR histone cell cycle regulation defective	616	Interaction with CCNA1.|Interaction with PAX3 (By similarity).|Interaction with histone H2B.				chromatin modification|regulation of transcription from RNA polymerase II promoter	PML body	chromatin binding|protein binding|sequence-specific DNA binding transcription factor activity|transcription corepressor activity			ovary(1)	1	Colorectal(54;0.0993)					GGGACTTTCTCATCGCTGTCA	0.468000													56	229					0	0	1	0	0
PI4KAP1	728233	broad.mit.edu	37	22	20394631	20394631	+	RNA	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr22:20394631G>A	uc010gse.1	-	4		c.454C>T			PI4KAP1_uc010gsf.1_RNA|PI4KAP1_uc010gsg.1_RNA|PI4KAP1_uc010gsh.1_RNA|PI4KAP1_uc002zsc.3_RNA|PI4KAP1_uc011ahn.1_RNA|PI4KAP1_uc010gsj.1_RNA|PI4KAP1_uc010gsk.1_RNA|PI4KAP1_uc010gsl.2_RNA					Homo sapiens cDNA FLJ11279 fis, clone PLACE1009444, highly similar to PHOSPHATIDYLINOSITOL 4-KINASE ALPHA (EC 2.7.1.67).												0						AACTGCTCCCGGAGGTCGCCG	0.562000													8	14					0	0	1	0	0
AIFM3	150209	broad.mit.edu	37	22	21333933	21333933	+	Missense_Mutation	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr22:21333933G>A	uc002ztj.2	+	18	1812	c.1594G>A	c.(1594-1596)GAC>AAC	p.D532N	AIFM3_uc002ztk.2_Missense_Mutation_p.D532N|AIFM3_uc002ztl.2_Missense_Mutation_p.D538N|AIFM3_uc011ahx.1_Missense_Mutation_p.D520N|AIFM3_uc002ztm.1_Missense_Mutation_p.D344N|LZTR1_uc002ztn.2_5'UTR|LZTR1_uc002zto.2_5'Flank|LZTR1_uc011ahy.1_5'Flank	NM_144704	NP_653305	Q96NN9	AIFM3_HUMAN	apoptosis-inducing factor,	532					activation of caspase activity by cytochrome c|cell redox homeostasis|electron transport chain|induction of apoptosis|mitochondrial depolarization|transport	endoplasmic reticulum|mitochondrial inner membrane	2 iron, 2 sulfur cluster binding|caspase activator activity|flavin adenine dinucleotide binding|metal ion binding|oxidoreductase activity|protein binding			ovary(2)|lung(2)	4	all_cancers(11;3.71e-26)|all_epithelial(7;1.59e-23)|Lung NSC(8;3.06e-15)|all_lung(8;5.05e-14)|Melanoma(16;0.000465)|Ovarian(15;0.0028)|Colorectal(54;0.0332)|all_neural(72;0.142)	Lung SC(17;0.0367)	LUSC - Lung squamous cell carcinoma(15;0.000204)|Lung(15;0.00494)|Epithelial(17;0.195)			AGAAGGCTTCGACGACGTCAT	0.637000													78	223					0	0	1	0	0
BCR	613	broad.mit.edu	37	22	23603578	23603578	+	Nonsense_Mutation	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr22:23603578C>T	uc002zww.2	+	4	2199	c.1603C>T	c.(1603-1605)CAG>TAG	p.Q535*	BCR_uc002zwx.2_Nonsense_Mutation_p.Q535*|BCR_uc011aiy.1_Nonsense_Mutation_p.Q124*|BCR_uc010gtx.1_Nonsense_Mutation_p.Q38*|uc010gty.2_5'Flank	NM_004327	NP_004318	P11274	BCR_HUMAN	breakpoint cluster region isoform 1	535	DH.				regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol	ATP binding|GTPase activator activity|protein serine/threonine kinase activity|Rho guanyl-nucleotide exchange factor activity		BCR/JAK2(6)	haematopoietic_and_lymphoid_tissue(6)|central_nervous_system(3)|urinary_tract(1)|lung(1)|skin(1)	12						CACCACCTCTCAGCCGGTGCT	0.567000			T	ABL1| FGFR1|JAK2 	CML|ALL|AML								24	116					0	0	1	0	0
GSTT1	2952	broad.mit.edu	37	22	24384148	24384148	+	Missense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr22:24384148G>C	uc002zze.3	-	1	137	c.84C>G	c.(82-84)TTC>TTG	p.F28L	GSTT1_uc002zzf.3_RNA|GSTT1_uc010gug.2_RNA|GSTT1_uc011ajl.1_5'UTR|GSTT1_uc010guh.2_RNA|GSTT1_uc010gui.1_RNA	NM_000853	NP_000844	P30711	GSTT1_HUMAN	glutathione S-transferase theta 1	28	GST N-terminal.				glutathione metabolic process	cytosol|soluble fraction	glutathione peroxidase activity|glutathione transferase activity			ovary(1)	1					Glutathione(DB00143)	TGCGCAGCTCGAAGGGAATGT	0.562000									Myelodysplasia_and_Acute_Myeloid_Leukemia_(AML)_Familial				36	80					0	0	1	0	0
IGLL3	91353	broad.mit.edu	37	22	25714262	25714262	+	Missense_Mutation	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr22:25714262G>A	uc003abr.2	+	1	375	c.275G>A	c.(274-276)GGG>GAG	p.G92E		NM_001013618	NP_001013640			immunoglobulin lambda-like polypeptide 3												0						ACTGGCCCCGGGTGCTGGCCC	0.617000													34	124					0	0	1	0	0
LRP5L	91355	broad.mit.edu	37	22	25750768	25750768	+	Silent	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr22:25750768G>A	uc003abs.2	-	3	2915	c.450C>T	c.(448-450)GTC>GTT	p.V150V	LRP5L_uc011ajz.1_Silent_p.V150V|LRP5L_uc010guw.1_Silent_p.V150V	NM_182492	NP_872298	A4QPB2	LRP5L_HUMAN	low density lipoprotein receptor-related protein	150	LDL-receptor class B 4.										0						TCGTCTCATCGACACTGATCG	0.607000													18	44					0	0	1	0	0
THOC5	8563	broad.mit.edu	37	22	29921835	29921835	+	Silent	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr22:29921835G>A	uc003afr.2	-	13	1502	c.1167C>T	c.(1165-1167)ATC>ATT	p.I389I	THOC5_uc003afq.2_Silent_p.I50I|THOC5_uc003afs.2_Silent_p.I389I|THOC5_uc003aft.2_Silent_p.I389I|THOC5_uc003afu.2_Silent_p.I389I|THOC5_uc010gvo.2_Silent_p.I133I	NM_001002878	NP_001002878	Q13769	THOC5_HUMAN	THO complex 5	389					intronless viral mRNA export from host nucleus|monocyte differentiation|mRNA processing|primitive hemopoiesis|RNA splicing	cytoplasm|intermediate filament cytoskeleton|THO complex part of transcription export complex	protein binding|RNA binding			breast(3)	3						ACCCTGCACTGATGGGGGTGA	0.542000													29	84					0	0	1	0	0
NF2	4771	broad.mit.edu	37	22	30077525	30077525	+	Missense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr22:30077525C>G	uc003age.3	+	15	2115	c.1672C>G	c.(1672-1674)CTG>GTG	p.L558V	NF2_uc003afy.3_Missense_Mutation_p.L558V|NF2_uc003afz.3_Missense_Mutation_p.L475V|NF2_uc003agf.3_Missense_Mutation_p.L558V|NF2_uc003agb.3_Missense_Mutation_p.L481V|NF2_uc003agc.3_Missense_Mutation_p.L520V|NF2_uc003agd.3_Intron|NF2_uc003agg.3_Missense_Mutation_p.L558V|NF2_uc003aga.3_Missense_Mutation_p.L516V|NF2_uc003agh.3_Missense_Mutation_p.L517V|NF2_uc003agi.3_Missense_Mutation_p.L475V|NF2_uc003agj.3_Intron|NF2_uc003agk.3_Missense_Mutation_p.L520V|NF2_uc010gvp.2_Missense_Mutation_p.L222V|NF2_uc011akq.1_Missense_Mutation_p.L184V	NM_000268	NP_000259	P35240	MERL_HUMAN	neurofibromin 2 isoform 1	558					actin cytoskeleton organization|negative regulation of cell migration|negative regulation of cell proliferation|negative regulation of cell-cell adhesion|negative regulation of cell-matrix adhesion|negative regulation of DNA replication|negative regulation of tyrosine phosphorylation of Stat3 protein|negative regulation of tyrosine phosphorylation of Stat5 protein|positive regulation of stress fiber assembly|regulation of hippo signaling cascade|Schwann cell proliferation	cytoskeleton|early endosome|extrinsic to membrane|filopodium membrane|nucleolus|perinuclear region of cytoplasm|ruffle membrane	cytoskeletal protein binding|protein binding	p.G502_I577del(1)|p.K525fs*18(1)|p.?(1)		meninges(372)|soft_tissue(284)|central_nervous_system(20)|kidney(10)|pleura(9)|skin(7)|large_intestine(5)|breast(5)|urinary_tract(3)|thyroid(2)|endometrium(2)|ovary(2)|lung(2)|stomach(2)|bone(2)|pituitary(1)	728						GGAGACAGCTCTGGATATTCT	0.463000			D|Mis|N|F|S|O		meningioma|acoustic neuroma|renal 	meningioma|acoustic neuroma			Neurofibromatosis_type_2				35	138					0	0	1	0	0
TBC1D10A	83874	broad.mit.edu	37	22	30722721	30722721	+	Silent	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr22:30722721G>A	uc011akt.1	-	1	174	c.150C>T	c.(148-150)TTC>TTT	p.F50F	TBC1D10A_uc010gvu.2_Silent_p.F50F|TBC1D10A_uc003ahk.3_Silent_p.F50F	NM_031937	NP_114143	Q9BXI6	TB10A_HUMAN	TBC1 domain family, member 10A	50						intracellular|microvillus	guanyl-nucleotide exchange factor activity|PDZ domain binding|Rab GTPase activator activity			ovary(1)	1						GGCGCTCGGCGAAGCCGTTGG	0.711000													8	44					0	0	1	0	0
SFI1	9814	broad.mit.edu	37	22	32009453	32009453	+	Silent	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr22:32009453C>T	uc003ale.2	+	26	3072	c.2679C>T	c.(2677-2679)CTC>CTT	p.L893L	SFI1_uc003alf.2_Silent_p.L862L|SFI1_uc003alg.2_Silent_p.L811L|SFI1_uc011alp.1_Silent_p.L799L|SFI1_uc011alq.1_Silent_p.L838L|SFI1_uc003alh.2_RNA|SFI1_uc010gwi.2_RNA|SFI1_uc003ali.2_5'Flank|SFI1_uc003alj.2_5'Flank	NM_001007467	NP_001007468	A8K8P3	SFI1_HUMAN	spindle assembly associated Sfi1 homolog isoform	893					G2/M transition of mitotic cell cycle	centriole|cytosol				central_nervous_system(1)	1						CCACGCGGCTCCTGCGCTTTG	0.687000													4	21					0	0	1	0	0
RFPL3	10738	broad.mit.edu	37	22	32754152	32754152	+	Missense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr22:32754152G>C	uc003amj.2	+	1	299	c.94G>C	c.(94-96)GCA>CCA	p.A32P	RFPL3_uc010gwn.2_Missense_Mutation_p.A3P	NM_001098535	NP_001092005	O75679	RFPL3_HUMAN	ret finger protein-like 3 isoform 1	32							zinc ion binding			ovary(1)	1						GGACATGGCTGCACTCTTCCA	0.483000													37	102					0	0	1	0	0
HMOX1	3162	broad.mit.edu	37	22	35782729	35782729	+	Missense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr22:35782729G>C	uc003ant.1	+	3	276	c.196G>C	c.(196-198)GAG>CAG	p.E66Q		NM_002133	NP_002124	P09601	HMOX1_HUMAN	heme oxygenase (decyclizing) 1	66					angiogenesis|anti-apoptosis|cell death|cellular iron ion homeostasis|endothelial cell proliferation|erythrocyte homeostasis|heme catabolic process|heme oxidation|intracellular protein kinase cascade|low-density lipoprotein particle clearance|negative regulation of leukocyte migration|negative regulation of smooth muscle cell proliferation|positive regulation of chemokine biosynthetic process|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of smooth muscle cell proliferation|protein homooligomerization|regulation of transcription from RNA polymerase II promoter in response to oxidative stress|response to hydrogen peroxide|response to nicotine|smooth muscle hyperplasia|transmembrane transport|wound healing involved in inflammatory response	endoplasmic reticulum membrane|extracellular space|microsome	enzyme binding|heme binding|heme oxygenase (decyclizing) activity|protein homodimerization activity|signal transducer activity			ovary(1)	1					NADH(DB00157)	GGAGGAGATTGAGCGCAACAA	0.617000													11	61					0	0	1	0	0
MYH9	4627	broad.mit.edu	37	22	36684429	36684429	+	Nonsense_Mutation	SNP	C	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr22:36684429C>A	uc003apg.2	-	34	5032	c.4801G>T	c.(4801-4803)GAG>TAG	p.E1601*		NM_002473	NP_002464	P35579	MYH9_HUMAN	myosin, heavy polypeptide 9, non-muscle	1601	Potential.				actin cytoskeleton reorganization|actin filament-based movement|angiogenesis|axon guidance|blood vessel endothelial cell migration|cytokinesis|integrin-mediated signaling pathway|leukocyte migration|membrane protein ectodomain proteolysis|monocyte differentiation|platelet formation|protein transport|regulation of cell shape	actomyosin contractile ring|cleavage furrow|cytosol|myosin complex|nucleus|ruffle|stress fiber|uropod	actin filament binding|actin-dependent ATPase activity|ADP binding|ATP binding|calmodulin binding|microfilament motor activity|protein anchor|protein homodimerization activity			breast(3)|ovary(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|lung(1)|skin(1)|kidney(1)|pancreas(1)	11						TGCTTCCTCTCGTCCTCCAGC	0.617000			T	ALK	ALCL		Deafness|autosomal dominant 17|Epstein syndrome|Fechtner syndrome|May-Hegglin anomaly|Sebastian syndrome		Hereditary_Macrothrombocytopenia_MYH9-associated				32	79					7.11191e-15	7.4054e-15	1	1	0
MYH9	4627	broad.mit.edu	37	22	36710324	36710324	+	Missense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr22:36710324C>G	uc003apg.2	-	13	1651	c.1420G>C	c.(1420-1422)GAG>CAG	p.E474Q	MYH9_uc003aph.1_Missense_Mutation_p.E338Q	NM_002473	NP_002464	P35579	MYH9_HUMAN	myosin, heavy polypeptide 9, non-muscle	474	Myosin head-like.				actin cytoskeleton reorganization|actin filament-based movement|angiogenesis|axon guidance|blood vessel endothelial cell migration|cytokinesis|integrin-mediated signaling pathway|leukocyte migration|membrane protein ectodomain proteolysis|monocyte differentiation|platelet formation|protein transport|regulation of cell shape	actomyosin contractile ring|cleavage furrow|cytosol|myosin complex|nucleus|ruffle|stress fiber|uropod	actin filament binding|actin-dependent ATPase activity|ADP binding|ATP binding|calmodulin binding|microfilament motor activity|protein anchor|protein homodimerization activity			breast(3)|ovary(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|lung(1)|skin(1)|kidney(1)|pancreas(1)	11						TGCAGCTTCTCATTGGTGTAA	0.527000			T	ALK	ALCL		Deafness|autosomal dominant 17|Epstein syndrome|Fechtner syndrome|May-Hegglin anomaly|Sebastian syndrome		Hereditary_Macrothrombocytopenia_MYH9-associated				21	66					0	0	1	0	0
FOXRED2	80020	broad.mit.edu	37	22	36889851	36889851	+	Splice_Site	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr22:36889851C>T	uc003apn.3	-	7	1733	c.1625_splice	c.e7-1	p.E542_splice	FOXRED2_uc003apm.3_Splice_Site_p.E94_splice|FOXRED2_uc003apo.3_Splice_Site_p.E542_splice|FOXRED2_uc003app.3_Splice_Site_p.E542_splice	NM_024955	NP_079231	Q8IWF2	FXRD2_HUMAN	FAD-dependent oxidoreductase domain containing 2						ER-associated protein catabolic process	endoplasmic reticulum lumen	flavin adenine dinucleotide binding|oxidoreductase activity|protein binding			lung(1)|kidney(1)	2						ACCTCCTGTTCTGTGGGGAGG	0.632000													20	43					0	0	1	0	0
C22orf33	339669	broad.mit.edu	37	22	37395884	37395884	+	Nonsense_Mutation	SNP	G	A	A	rs149806749		TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr22:37395884G>A	uc003aqf.2	-	4	777	c.631C>T	c.(631-633)CGA>TGA	p.R211*	C22orf33_uc003aqe.2_Nonsense_Mutation_p.R126*	NM_001163857	NP_001157329	O43247	EAN57_HUMAN	hypothetical protein LOC339669 isoform 1	211											0						ACTTGACCTCGAAACAAGTTT	0.557000													18	74					0	0	1	0	0
TRIOBP	11078	broad.mit.edu	37	22	38119859	38119859	+	Silent	SNP	C	T	T	rs66505048		TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr22:38119859C>T	uc003atr.2	+	7	1567	c.1296C>T	c.(1294-1296)TGC>TGT	p.C432C	TRIOBP_uc003atu.2_Silent_p.C260C|TRIOBP_uc003atq.1_Silent_p.C432C|TRIOBP_uc003ats.1_Silent_p.C260C	NM_001039141	NP_001034230	Q9H2D6	TARA_HUMAN	TRIO and F-actin binding protein isoform 6	432					actin modification|barbed-end actin filament capping	actin cytoskeleton|cytoplasm|nucleus	actin binding|GTP-Rho binding|myosin II binding|protein binding|ubiquitin protein ligase binding			central_nervous_system(1)	1	Melanoma(58;0.0574)					GAACATCCTGCGCCCAGCGGG	0.582000													4	146					0	0	1	0	0
MICALL1	85377	broad.mit.edu	37	22	38323718	38323718	+	Missense_Mutation	SNP	C	T	T	rs141260509		TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr22:38323718C>T	uc003aui.2	+	9	1850	c.1766C>T	c.(1765-1767)TCA>TTA	p.S589L		NM_033386	NP_203744	Q8N3F8	MILK1_HUMAN	molecule interacting with Rab13	589	Pro-rich.					cytoplasm|cytoskeleton	protein binding|zinc ion binding			breast(1)	1	Melanoma(58;0.045)					AGGGGCAGCTCAGGTCCCCAG	0.652000													51	123					0	0	1	0	0
PICK1	9463	broad.mit.edu	37	22	38469791	38469791	+	Silent	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr22:38469791G>C	uc003auq.2	+	11	1185	c.795G>C	c.(793-795)CTG>CTC	p.L265L	PICK1_uc003aur.2_Silent_p.L265L|PICK1_uc003aus.2_Silent_p.L265L|PICK1_uc003aut.2_Silent_p.L265L	NM_012407	NP_036539	Q9NRD5	PICK1_HUMAN	protein interacting with C kinase 1	265	AH.				activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|DNA methylation involved in embryo development|DNA methylation involved in gamete generation|monoamine transport|neuronal ion channel clustering|protein phosphorylation|receptor clustering|retrograde vesicle-mediated transport, Golgi to ER|synaptic transmission	cell junction|endocytic vesicle membrane|Golgi apparatus|perinuclear region of cytoplasm|presynaptic membrane	ATPase activity|metal ion binding|protein C-terminus binding|protein kinase C binding|receptor binding				0	Melanoma(58;0.045)					CGTACTGCCTGAAGGTGAAGG	0.607000													26	86					0	0	1	0	0
APOBEC3B	9582	broad.mit.edu	37	22	39381838	39381838	+	Missense_Mutation	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr22:39381838C>T	uc003awo.1	+	3	250	c.196C>T	c.(196-198)CAC>TAC	p.H66Y	APOBEC3A_uc011aoc.1_Intron|APOBEC3B_uc003awp.1_Missense_Mutation_p.H66Y|APOBEC3B_uc003awq.1_RNA|APOBEC3D_uc011aod.1_Intron|APOBEC3D_uc011aoe.1_Intron|APOBEC3D_uc011aof.1_Intron	NM_004900	NP_004891	Q9UH17	ABC3B_HUMAN	apolipoprotein B mRNA editing enzyme, catalytic	66		Zinc (By similarity).			negative regulation of transposition		hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines|RNA binding|zinc ion binding			ovary(1)	1	Melanoma(58;0.04)					GCCTCAGTACCACGCAGAAAT	0.323000													24	94					0	0	1	0	0
CACNA1I	8911	broad.mit.edu	37	22	40043865	40043865	+	Missense_Mutation	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr22:40043865C>T	uc003ayc.2	+	9	1501	c.1501C>T	c.(1501-1503)CTC>TTC	p.L501F	CACNA1I_uc003ayd.2_Intron|CACNA1I_uc003aye.2_Missense_Mutation_p.L416F|CACNA1I_uc003ayf.2_Intron	NM_021096	NP_066919	Q9P0X4	CAC1I_HUMAN	calcium channel, voltage-dependent, T type,	501	Cytoplasmic (Potential).				axon guidance|signal transduction	voltage-gated calcium channel complex	low voltage-gated calcium channel activity|protein binding			breast(1)|central_nervous_system(1)	2	Melanoma(58;0.0749)				Flunarizine(DB04841)|Paramethadione(DB00617)|Verapamil(DB00661)	agggaGACATCTCGGAAGCCG	0.343000													20	75					0	0	1	0	0
ST13	6767	broad.mit.edu	37	22	41226912	41226912	+	Missense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr22:41226912C>G	uc003aze.2	-	9	873	c.730G>C	c.(730-732)GAG>CAG	p.E244Q	ST13_uc011aow.1_Missense_Mutation_p.E234Q	NM_003932	NP_003923	P50502	F10A1_HUMAN	heat shock 70kD protein binding protein	244							protein binding, bridging				0						ATCTCTCGCTCTTCACGTTTT	0.408000													26	71					0	0	1	0	0
TOB2	10766	broad.mit.edu	37	22	41832381	41832381	+	Silent	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr22:41832381G>A	uc003azz.1	-	2	1676	c.969C>T	c.(967-969)CTC>CTT	p.L323L		NM_016272	NP_057356	Q14106	TOB2_HUMAN	transducer of ERBB2, 2	323					female gamete generation|negative regulation of cell proliferation	cytoplasm|nucleus				ovary(1)	1						GGTTGTAGCTGAGGCCTTCCA	0.597000													33	84					0	0	1	0	0
TCF20	6942	broad.mit.edu	37	22	42606167	42606167	+	Silent	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr22:42606167C>G	uc003bcj.1	-	1	5279	c.5145G>C	c.(5143-5145)CGG>CGC	p.R1715R	TCF20_uc003bck.1_Silent_p.R1715R|TCF20_uc003bnt.2_Silent_p.R1715R	NM_005650	NP_005641	Q9UGU0	TCF20_HUMAN	transcription factor 20 isoform 1	1715					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|transcription coactivator activity|zinc ion binding			ovary(4)|skin(1)	5						CACCCATGTTCCGGTAACTGG	0.537000													31	104					0	0	1	0	0
PACSIN2	11252	broad.mit.edu	37	22	43289475	43289475	+	Missense_Mutation	SNP	G	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr22:43289475G>T	uc010gzg.2	-	3	427	c.205C>A	c.(205-207)CTC>ATC	p.L69I	PACSIN2_uc003bdg.3_Missense_Mutation_p.L69I|PACSIN2_uc003bde.3_Missense_Mutation_p.L69I|PACSIN2_uc003bdf.3_Missense_Mutation_p.L69I	NM_007229	NP_009160	Q9UNF0	PACN2_HUMAN	protein kinase C and casein kinase substrate in	69	FCH.				actin cytoskeleton organization|endocytosis	cytoplasmic membrane-bounded vesicle	transporter activity				0		Glioma(61;0.222)				TTCTCCACGAGCTGCCTCCAG	0.672000													19	69					8.10497e-08	8.29747e-08	1	1	0
BIK	638	broad.mit.edu	37	22	43525228	43525228	+	Missense_Mutation	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr22:43525228G>A	uc003bdk.2	+	5	460	c.400G>A	c.(400-402)GAA>AAA	p.E134K		NM_001197	NP_001188	Q13323	BIK_HUMAN	BCL2-interacting killer	134					apoptosis|induction of apoptosis|positive regulation of protein homooligomerization|positive regulation of release of cytochrome c from mitochondria	endomembrane system|integral to membrane					0		Ovarian(80;0.0694)				GGTGTCCTGCGAACAGGtgct	0.542000													26	79					0	0	1	0	0
EFCAB6	64800	broad.mit.edu	37	22	44112776	44112776	+	Missense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr22:44112776G>C	uc003bdy.1	-	9	1049	c.834C>G	c.(832-834)ATC>ATG	p.I278M	EFCAB6_uc003bdz.1_Missense_Mutation_p.I126M|EFCAB6_uc010gzi.1_Missense_Mutation_p.I126M|EFCAB6_uc010gzk.1_RNA|EFCAB6_uc011aqa.1_Missense_Mutation_p.I172M|EFCAB6_uc003bea.1_Missense_Mutation_p.I275M|EFCAB6_uc003beb.3_Missense_Mutation_p.I172M	NM_022785	NP_073622	Q5THR3	EFCB6_HUMAN	CAP-binding protein complex interacting protein	278					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	calcium ion binding			ovary(3)|skin(2)|upper_aerodigestive_tract(1)|pancreas(1)	7		Ovarian(80;0.0247)|all_neural(38;0.025)				AGTTTCTCCAGATATCTTCAG	0.388000													13	68					0	0	1	0	0
PNPLA3	80339	broad.mit.edu	37	22	44319878	44319878	+	Silent	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr22:44319878G>A	uc003bei.1	+	1	260	c.87G>A	c.(85-87)CTG>CTA	p.L29L	PNPLA3_uc010gzm.1_RNA	NM_025225	NP_079501	Q9NST1	PLPL3_HUMAN	patatin-like phospholipase domain containing 3	29	Cytoplasmic (Potential).|Patatin.				triglyceride biosynthetic process|triglyceride catabolic process	integral to membrane	diolein transacylation activity|mono-olein transacylation activity|phospholipase A2 activity|triglyceride lipase activity				0		Ovarian(80;0.024)|all_neural(38;0.0416)				CCCGCTGCCTGAGCGAGCACG	0.662000													5	21					0	0	1	0	0
PKDREJ	10343	broad.mit.edu	37	22	46654854	46654854	+	Missense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr22:46654854G>C	uc003bhh.2	-	1	4366	c.4366C>G	c.(4366-4368)CAA>GAA	p.Q1456E		NM_006071	NP_006062	Q9NTG1	PKDRE_HUMAN	receptor for egg jelly-like protein precursor	1456	Cytoplasmic (Potential).				acrosome reaction|neuropeptide signaling pathway	integral to membrane	calcium ion binding|ion channel activity			breast(3)|ovary(2)	5		Ovarian(80;0.00965)|all_neural(38;0.0416)		UCEC - Uterine corpus endometrioid carcinoma (28;0.00459)		AGATCCGCTTGAGGTTTCCTC	0.388000													3	154					0	0	1	0	0
PKDREJ	10343	broad.mit.edu	37	22	46656322	46656322	+	Silent	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr22:46656322G>C	uc003bhh.2	-	1	2898	c.2898C>G	c.(2896-2898)CTC>CTG	p.L966L		NM_006071	NP_006062	Q9NTG1	PKDRE_HUMAN	receptor for egg jelly-like protein precursor	966	Extracellular (Potential).				acrosome reaction|neuropeptide signaling pathway	integral to membrane	calcium ion binding|ion channel activity			breast(3)|ovary(2)	5		Ovarian(80;0.00965)|all_neural(38;0.0416)		UCEC - Uterine corpus endometrioid carcinoma (28;0.00459)		GTCCCACTGTGAGATTAAAAG	0.493000													6	255					0	0	1	0	0
PKDREJ	10343	broad.mit.edu	37	22	46657638	46657638	+	Missense_Mutation	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr22:46657638G>A	uc003bhh.2	-	1	1582	c.1582C>T	c.(1582-1584)CGG>TGG	p.R528W		NM_006071	NP_006062	Q9NTG1	PKDRE_HUMAN	receptor for egg jelly-like protein precursor	528	Extracellular (Potential).|REJ.				acrosome reaction|neuropeptide signaling pathway	integral to membrane	calcium ion binding|ion channel activity			breast(3)|ovary(2)	5		Ovarian(80;0.00965)|all_neural(38;0.0416)		UCEC - Uterine corpus endometrioid carcinoma (28;0.00459)		AAAAAATGCCGAAAAGCAAAA	0.408000													4	211					0	0	1	0	0
TRMU	55687	broad.mit.edu	37	22	46733701	46733701	+	Missense_Mutation	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr22:46733701G>A	uc003bhp.2	+	2	472	c.108G>A	c.(106-108)ATG>ATA	p.M36I	TRMU_uc011arb.1_Missense_Mutation_p.M36I|TRMU_uc003bhq.2_5'UTR|TRMU_uc003bhs.2_Missense_Mutation_p.M36I|TRMU_uc003bhr.2_5'UTR|TRMU_uc003bht.2_5'UTR|TRMU_uc003bhu.2_5'UTR|TRMU_uc003bhv.2_5'UTR	NM_018006	NP_060476	O75648	MTU1_HUMAN	tRNA 5-methylaminomethyl-2-thiouridylate	36		ATP; via amide nitrogen and carbonyl oxygen (By similarity).				mitochondrion	ATP binding|sulfurtransferase activity|tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity|tRNA binding			ovary(1)	1		Ovarian(80;0.00965)|Breast(42;0.0194)|all_neural(38;0.0416)		UCEC - Uterine corpus endometrioid carcinoma (28;0.00449)|LUAD - Lung adenocarcinoma(64;0.248)		GGGTGTTTATGAAGAACTGGG	0.468000													24	75					0	0	1	0	0
PLXNB2	23654	broad.mit.edu	37	22	50728569	50728569	+	Missense_Mutation	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr22:50728569C>T	uc003bkv.3	-	3	551	c.445G>A	c.(445-447)GAG>AAG	p.E149K		NM_012401	NP_036533	O15031	PLXB2_HUMAN	plexin B2 precursor	149	Extracellular (Potential).|Sema.				regulation of small GTPase mediated signal transduction	integral to membrane|intracellular	GTPase activator activity|protein binding|receptor activity			ovary(4)|central_nervous_system(1)|skin(1)	6		all_cancers(38;5.78e-13)|all_epithelial(38;1.71e-11)|all_lung(38;3.89e-05)|Breast(42;0.000523)|Lung NSC(38;0.000992)|Ovarian(80;0.0221)|Hepatocellular(38;0.0691)|Lung SC(80;0.113)		BRCA - Breast invasive adenocarcinoma(115;0.205)|LUAD - Lung adenocarcinoma(64;0.247)		GCCACGCCCTCATCATTGCTG	0.627000													9	55					0	0	1	0	0
LMF2	91289	broad.mit.edu	37	22	50943260	50943260	+	Nonsense_Mutation	SNP	C	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr22:50943260C>A	uc003blp.2	-	10	1439	c.1408G>T	c.(1408-1410)GAG>TAG	p.E470*	LMF2_uc010hba.2_Nonsense_Mutation_p.E292*|LMF2_uc003blo.2_Nonsense_Mutation_p.E445*	NM_033200	NP_149977	Q9BU23	LMF2_HUMAN	lipase maturation factor 2	470						endoplasmic reticulum membrane|integral to membrane				breast(1)	1		all_cancers(38;1.31e-09)|all_epithelial(38;1.81e-08)|all_lung(38;0.000817)|Breast(42;0.00387)|Lung NSC(38;0.0124)|Ovarian(80;0.104)|Lung SC(80;0.162)|Hepatocellular(38;0.178)		BRCA - Breast invasive adenocarcinoma(115;0.205)|LUAD - Lung adenocarcinoma(64;0.247)		TAACTGCCCTCCAGCACCACC	0.701000													7	34					0.00198382	0.00200514	1	1	0
NCAPH2	29781	broad.mit.edu	37	22	50957693	50957693	+	Missense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr22:50957693G>C	uc003blr.3	+	9	927	c.805G>C	c.(805-807)GAG>CAG	p.E269Q	NCAPH2_uc003blq.3_Missense_Mutation_p.E269Q|NCAPH2_uc003blv.2_Missense_Mutation_p.E269Q|NCAPH2_uc010hbb.2_Missense_Mutation_p.E120Q|NCAPH2_uc003blu.3_RNA|NCAPH2_uc003bls.3_RNA|NCAPH2_uc003blt.3_RNA|NCAPH2_uc003blw.3_RNA|NCAPH2_uc003blx.3_Missense_Mutation_p.E269Q|NCAPH2_uc003bly.3_RNA	NM_152299	NP_689512	Q6IBW4	CNDH2_HUMAN	kleisin beta isoform 2	269					chromosome condensation	chromosome|nucleus				ovary(1)|skin(1)	2		all_cancers(38;4.58e-14)|all_epithelial(38;1.12e-12)|all_lung(38;3.07e-05)|Breast(42;6.27e-05)|Lung NSC(38;0.000813)|Ovarian(80;0.0221)|Hepatocellular(38;0.0691)|Lung SC(80;0.113)		BRCA - Breast invasive adenocarcinoma(115;0.212)		AGAGCTTCCTGAGGCCTCGGC	0.662000													10	16					0	0	1	0	0
CHKB	1120	broad.mit.edu	37	22	51020270	51020270	+	Missense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr22:51020270C>G	uc003bms.2	-	3	573	c.355G>C	c.(355-357)GAA>CAA	p.E119Q	CHKB-CPT1B_uc003bmp.2_5'Flank|CHKB-CPT1B_uc003bmt.1_Intron|CHKB-CPT1B_uc003bmu.2_5'UTR|CHKB_uc003bmv.2_Missense_Mutation_p.E119Q|LOC100144603_uc003bmw.3_5'Flank	NM_005198	NP_005189	Q9Y259	CHKB_HUMAN	choline kinase beta	119					phosphatidylethanolamine biosynthetic process		ATP binding|choline kinase activity|ethanolamine kinase activity				0		all_cancers(38;8.8e-15)|all_epithelial(38;1.12e-12)|all_lung(38;3.07e-05)|Breast(42;6.27e-05)|Lung NSC(38;0.000813)|Ovarian(80;0.0221)|Hepatocellular(38;0.0691)|Lung SC(80;0.113)		all cancers(3;4.04e-77)|OV - Ovarian serous cystadenocarcinoma(4;5.79e-74)|Epithelial(4;6.17e-70)|GBM - Glioblastoma multiforme(4;5.68e-08)|LUAD - Lung adenocarcinoma(64;0.0016)|Lung(4;0.00942)|BRCA - Breast invasive adenocarcinoma(115;0.205)	Choline(DB00122)	ATCACGCTTTCTAGCACCAGG	0.617000													25	118					0	0	1	0	0
IL5RA	3568	broad.mit.edu	37	3	3139885	3139885	+	Missense_Mutation	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr3:3139885G>A	uc011ask.1	-	7	1101	c.457C>T	c.(457-459)CTT>TTT	p.L153F	IL5RA_uc010hbq.2_Missense_Mutation_p.L153F|IL5RA_uc010hbr.2_Intron|IL5RA_uc010hbs.2_Missense_Mutation_p.L153F|IL5RA_uc011asl.1_Missense_Mutation_p.L153F|IL5RA_uc011asm.1_Missense_Mutation_p.L153F|IL5RA_uc010hbt.2_Missense_Mutation_p.L153F|IL5RA_uc011asn.1_Missense_Mutation_p.L153F|IL5RA_uc010hbu.2_Missense_Mutation_p.L153F	NM_000564	NP_000555	Q01344	IL5RA_HUMAN	interleukin 5 receptor, alpha isoform 1	153	Extracellular (Potential).				cell proliferation	extracellular space|integral to membrane|plasma membrane	interleukin-5 receptor activity			ovary(1)	1				Epithelial(13;0.00278)|all cancers(10;0.00809)|OV - Ovarian serous cystadenocarcinoma(96;0.00944)		GTGCAGTGAAGGGAAACTTGG	0.423000													18	71					0	0	1	0	0
BHLHE40	8553	broad.mit.edu	37	3	5025226	5025226	+	Missense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr3:5025226C>G	uc003bqf.2	+	5	1395	c.1088C>G	c.(1087-1089)TCT>TGT	p.S363C	BHLHE40_uc011asw.1_Missense_Mutation_p.S223C	NM_003670	NP_003661	O14503	BHE40_HUMAN	basic helix-loop-helix family, member e40	363						Golgi apparatus|nucleolus	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity			ovary(1)	1						GCAGCCCTCTCTAGCTTCATG	0.592000													42	146					0	0	1	0	0
BHLHE40	8553	broad.mit.edu	37	3	5025281	5025281	+	Silent	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr3:5025281C>T	uc003bqf.2	+	5	1450	c.1143C>T	c.(1141-1143)CTC>CTT	p.L381L	BHLHE40_uc011asw.1_Silent_p.L241L	NM_003670	NP_003661	O14503	BHE40_HUMAN	basic helix-loop-helix family, member e40	381						Golgi apparatus|nucleolus	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity			ovary(1)	1						CCCAGAGACTCCCTTCTCCCT	0.547000													35	152					0	0	1	0	0
BRPF1	7862	broad.mit.edu	37	3	9781517	9781517	+	Missense_Mutation	SNP	G	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr3:9781517G>T	uc003bse.2	+	3	1833	c.1434G>T	c.(1432-1434)TGG>TGT	p.W478C	BRPF1_uc003bsf.2_Missense_Mutation_p.W478C|BRPF1_uc003bsg.2_Missense_Mutation_p.W478C|BRPF1_uc011ati.1_Missense_Mutation_p.W478C	NM_004634	NP_004625	P55201	BRPF1_HUMAN	bromodomain and PHD finger-containing protein 1	478					histone H3 acetylation|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|MOZ/MORF histone acetyltransferase complex|plasma membrane	DNA binding|zinc ion binding			ovary(2)|central_nervous_system(1)	3	Medulloblastoma(99;0.227)					GTAAGGGCTGGAGCTCAGAGA	0.483000													8	14					3.09899e-07	3.16632e-07	1	1	0
BRPF1	7862	broad.mit.edu	37	3	9784724	9784724	+	Missense_Mutation	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr3:9784724G>A	uc003bse.2	+	7	2479	c.2080G>A	c.(2080-2082)GAG>AAG	p.E694K	BRPF1_uc003bsf.2_Missense_Mutation_p.E700K|BRPF1_uc003bsg.2_Missense_Mutation_p.E694K|BRPF1_uc011ati.1_Missense_Mutation_p.E694K	NM_004634	NP_004625	P55201	BRPF1_HUMAN	bromodomain and PHD finger-containing protein 1	694	Required for RUNX1 and RUNX2 transcriptional activation.|Interaction with MEAF6 and ING5.|Bromo.				histone H3 acetylation|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|MOZ/MORF histone acetyltransferase complex|plasma membrane	DNA binding|zinc ion binding			ovary(2)|central_nervous_system(1)	3	Medulloblastoma(99;0.227)					TGATGATTTTGAGGAGGACTT	0.507000													19	57					0	0	1	0	0
ATP2B2	491	broad.mit.edu	37	3	10384497	10384497	+	Missense_Mutation	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr3:10384497C>T	uc003bvt.2	-	19	3295	c.2856G>A	c.(2854-2856)ATG>ATA	p.M952I	ATP2B2_uc003bvv.2_Missense_Mutation_p.M907I|ATP2B2_uc003bvw.2_Missense_Mutation_p.M907I|ATP2B2_uc010hdo.2_Missense_Mutation_p.M657I	NM_001001331	NP_001001331	Q01814	AT2B2_HUMAN	plasma membrane calcium ATPase 2 isoform 1	952	Helical; (Potential).				ATP biosynthetic process|cytosolic calcium ion homeostasis|platelet activation	cytosol|integral to membrane|plasma membrane	ATP binding|ATP binding|calcium ion binding|calcium-transporting ATPase activity|calcium-transporting ATPase activity|calmodulin binding|calmodulin binding|metal ion binding|PDZ domain binding|protein C-terminus binding			ovary(3)|skin(2)|central_nervous_system(1)	6						GGATGTTCTTCATCATGGTCC	0.637000													13	58					0	0	1	0	0
XPC	7508	broad.mit.edu	37	3	14220117	14220117	+	Translation_Start_Site	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr3:14220117G>C	uc011ave.1	-	1	56	c.-48C>G	c.(-50--46)ATCGC>ATGGC		XPC_uc011avf.1_Translation_Start_Site|XPC_uc011avg.1_Translation_Start_Site|LSM3_uc003byn.2_5'Flank	NM_004628	NP_004619	Q01831	XPC_HUMAN	xeroderma pigmentosum, complementation group C						nucleotide-excision repair, DNA damage recognition|nucleotide-excision repair, DNA damage removal	cytoplasm|nucleoplasm|XPC complex	bubble DNA binding|damaged DNA binding|loop DNA binding|protein binding|single-stranded DNA binding			ovary(2)|breast(1)	3						ACCCGGCCGCGATGCGCTAGA	0.697000			Mis|N|F|S			skin basal cell|skin squamous cell|melanoma		NER	Xeroderma_Pigmentosum				7	35					0	0	1	0	0
ZFYVE20	64145	broad.mit.edu	37	3	15131981	15131981	+	Missense_Mutation	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr3:15131981C>T	uc003bzm.1	-	5	828	c.214G>A	c.(214-216)GAG>AAG	p.E72K	ZFYVE20_uc010hek.1_Missense_Mutation_p.E72K|ZFYVE20_uc011avn.1_Missense_Mutation_p.E72K	NM_022340	NP_071735	Q9H1K0	RBNS5_HUMAN	FYVE-finger-containing Rab5 effector protein	72					blood coagulation|endosome transport|protein transport	early endosome membrane|plasma membrane	protein binding|zinc ion binding			skin(2)	2						GTCCCTGACTCTGCTCGATCA	0.413000													29	84					0	0	1	0	0
HACL1	26061	broad.mit.edu	37	3	15633186	15633186	+	Missense_Mutation	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr3:15633186G>A	uc003caf.2	-	4	389	c.229C>T	c.(229-231)CCA>TCA	p.P77S	HACL1_uc011avr.1_RNA|HACL1_uc011avs.1_Intron|HACL1_uc011avt.1_Missense_Mutation_p.P77S|HACL1_uc003cag.2_5'UTR|HACL1_uc011avu.1_Missense_Mutation_p.P77S|HACL1_uc010hep.2_Intron	NM_012260	NP_036392	Q9UJ83	HACL1_HUMAN	2-hydroxyphytanoyl-CoA lyase	77					fatty acid alpha-oxidation	peroxisomal matrix	carbon-carbon lyase activity|identical protein binding|magnesium ion binding|thiamine pyrophosphate binding				0						CAGACTCCTGGCCTAAAAGCA	0.403000													15	37					0	0	1	0	0
NR1D2	9975	broad.mit.edu	37	3	24009398	24009398	+	Nonsense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr3:24009398C>G	uc003ccs.2	+	7	1746	c.1427C>G	c.(1426-1428)TCA>TGA	p.S476*	NR1D2_uc010hfd.2_RNA|NR1D2_uc011awk.1_Nonsense_Mutation_p.S401*	NM_005126	NP_005117	Q14995	NR1D2_HUMAN	nuclear receptor subfamily 1, group D, member 2	476					regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	nucleoplasm	sequence-specific DNA binding|steroid hormone receptor activity|zinc ion binding			urinary_tract(1)|kidney(1)|skin(1)	3						GATTTACACTCAATGGGAGCA	0.383000													3	132					0	0	1	0	0
OXSM	54995	broad.mit.edu	37	3	25835623	25835623	+	Missense_Mutation	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr3:25835623G>A	uc003cdn.2	+	3	1125	c.1018G>A	c.(1018-1020)GAG>AAG	p.E340K	OXSM_uc011awp.1_Missense_Mutation_p.E65K|OXSM_uc010hfh.2_Missense_Mutation_p.E257K	NM_017897	NP_060367	Q9NWU1	OXSM_HUMAN	3-oxoacyl-ACP synthase, mitochondrial isoform 1	340					acyl-CoA metabolic process|medium-chain fatty acid biosynthetic process|short-chain fatty acid biosynthetic process	mitochondrion	3-oxoacyl-[acyl-carrier-protein] synthase activity			ovary(1)|breast(1)	2						TGTGCAGCCTGAGGAGATATC	0.378000													19	53					0	0	1	0	0
AZI2	64343	broad.mit.edu	37	3	28365637	28365637	+	Missense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr3:28365637C>G	uc003ceb.2	-	8	1607	c.1075G>C	c.(1075-1077)GAG>CAG	p.E359Q	AZI2_uc003cec.2_Missense_Mutation_p.E247Q|AZI2_uc003ced.2_3'UTR	NM_022461	NP_071906	Q9H6S1	AZI2_HUMAN	5-azacytidine induced 2 isoform a	359						mitochondrion|plasma membrane				ovary(2)	2						AATGCTGTCTCACTTGATTTA	0.393000													6	200					0	0	1	0	0
CNOT10	25904	broad.mit.edu	37	3	32776386	32776386	+	Missense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr3:32776386G>C	uc003cfc.1	+	12	1687	c.1432G>C	c.(1432-1434)GAT>CAT	p.D478H	CNOT10_uc011axi.1_Missense_Mutation_p.D250H|CNOT10_uc003cfd.1_Missense_Mutation_p.D477H|CNOT10_uc003cfe.1_Missense_Mutation_p.D478H|CNOT10_uc010hfv.1_RNA|CNOT10_uc011axj.1_Missense_Mutation_p.D538H|CNOT10_uc010hfw.1_Missense_Mutation_p.D173H	NM_015442	NP_056257	Q9H9A5	CNOTA_HUMAN	CCR4-NOT transcription complex, subunit 10	478				D -> G (in Ref. 1; BAB14108).	nuclear-transcribed mRNA poly(A) tail shortening	cytosol	protein binding			central_nervous_system(1)|skin(1)	2						AGAACAGCAAGATCCAAAGCA	0.443000													54	191					0	0	1	0	0
TRANK1	9881	broad.mit.edu	37	3	36873739	36873739	+	Silent	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr3:36873739G>A	uc003cgj.2	-	12	5855	c.5553C>T	c.(5551-5553)CTC>CTT	p.L1851L		NM_014831	NP_055646	O15050	TRNK1_HUMAN	lupus brain antigen 1	2401					DNA repair		ATP binding|ATP-dependent DNA helicase activity|DNA binding			ovary(1)|central_nervous_system(1)	2						TGCTGGGGATGAGTGGTTCTT	0.493000													5	256					0	0	1	0	0
VILL	50853	broad.mit.edu	37	3	38043241	38043241	+	Nonsense_Mutation	SNP	G	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr3:38043241G>T	uc003chj.2	+	13	1655	c.1369G>T	c.(1369-1371)GAG>TAG	p.E457*	VILL_uc003chl.2_Nonsense_Mutation_p.E457*|VILL_uc010hgu.2_Nonsense_Mutation_p.E287*	NM_015873	NP_056957	O15195	VILL_HUMAN	villin-like protein	457					actin filament capping|cytoskeleton organization	actin cytoskeleton	actin binding|structural constituent of cytoskeleton				0				KIRC - Kidney renal clear cell carcinoma(284;0.0525)|Kidney(284;0.0661)		CAGCAACGCTGAGGAACTAGA	0.612000													20	67					7.45023e-12	7.70726e-12	1	1	0
SCN5A	6331	broad.mit.edu	37	3	38648291	38648291	+	Missense_Mutation	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr3:38648291C>T	uc003cio.2	-	9	1203	c.1009G>A	c.(1009-1011)GAG>AAG	p.E337K	SCN5A_uc003cin.2_Missense_Mutation_p.E337K|SCN5A_uc003cil.3_Missense_Mutation_p.E337K|SCN5A_uc010hhi.2_Missense_Mutation_p.E337K|SCN5A_uc010hhk.2_Missense_Mutation_p.E337K|SCN5A_uc011ayr.1_Missense_Mutation_p.E337K|SCN5A_uc010hhj.1_5'Flank	NM_198056	NP_932173	Q14524	SCN5A_HUMAN	voltage-gated sodium channel type V alpha	337					blood circulation|cellular response to calcium ion|muscle contraction|regulation of heart contraction	sarcolemma|voltage-gated sodium channel complex	protein binding|voltage-gated sodium channel activity			ovary(4)|pancreas(2)|skin(2)|central_nervous_system(1)	9	Medulloblastoma(35;0.163)			KIRC - Kidney renal clear cell carcinoma(284;0.0822)|Kidney(284;0.1)	Benzonatate(DB00868)|Bepridil(DB01244)|Carbamazepine(DB00564)|Cocaine(DB00907)|Dibucaine(DB00527)|Disopyramide(DB00280)|Encainide(DB01228)|Ethotoin(DB00754)|Flecainide(DB01195)|Fosphenytoin(DB01320)|Hexylcaine(DB00473)|Indecainide(DB00192)|Lamotrigine(DB00555)|Lidocaine(DB00281)|Mephenytoin(DB00532)|Mexiletine(DB00379)|Mibefradil(DB01388)|Moricizine(DB00680)|Oxcarbazepine(DB00776)|Phenytoin(DB00252)|Prilocaine(DB00750)|Procainamide(DB01035)|Propafenone(DB01182)|Quinidine(DB00908)|Riluzole(DB00740)|Tocainide(DB01056)|Verapamil(DB00661)	CGGTAGCCCTCCGGACATGTC	0.602000													15	87					0	0	1	0	0
SCN10A	6336	broad.mit.edu	37	3	38798227	38798227	+	Missense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr3:38798227C>G	uc003ciq.2	-	9	1228	c.1228G>C	c.(1228-1230)GAA>CAA	p.E410Q		NM_006514	NP_006505	Q9Y5Y9	SCNAA_HUMAN	sodium channel, voltage-gated, type X, alpha	410					sensory perception	voltage-gated sodium channel complex				ovary(5)|skin(3)|large_intestine(1)|kidney(1)	10				KIRC - Kidney renal clear cell carcinoma(284;0.0769)|Kidney(284;0.0945)	Benzocaine(DB01086)|Bupivacaine(DB00297)|Chloroprocaine(DB01161)|Cocaine(DB00907)|Dibucaine(DB00527)|Dyclonine(DB00645)|Hexylcaine(DB00473)|Levobupivacaine(DB01002)|Lidocaine(DB00281)|Mepivacaine(DB00961)|Oxybuprocaine(DB00892)|Procaine(DB00721)|Proparacaine(DB00807)|Ropivacaine(DB00296)	GCTTCAATTTCATCAGTGGTT	0.498000													6	195					0	0	1	0	0
SCN11A	11280	broad.mit.edu	37	3	38926868	38926868	+	Nonsense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr3:38926868G>C	uc011ays.1	-	17	3174	c.2975C>G	c.(2974-2976)TCA>TGA	p.S992*	SCN11A_uc010hhn.1_Nonsense_Mutation_p.S70*	NM_014139	NP_054858	Q9UI33	SCNBA_HUMAN	sodium channel, voltage-gated, type XI, alpha	992					response to drug	voltage-gated sodium channel complex	voltage-gated sodium channel activity			skin(6)|ovary(1)|haematopoietic_and_lymphoid_tissue(1)|pancreas(1)	9				Kidney(284;0.00202)|KIRC - Kidney renal clear cell carcinoma(284;0.00226)	Cocaine(DB00907)	GCTACATTCTGATAGTATACT	0.438000													16	81					0	0	1	0	0
SCN11A	11280	broad.mit.edu	37	3	38946787	38946787	+	Missense_Mutation	SNP	C	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr3:38946787C>A	uc011ays.1	-	11	1698	c.1499G>T	c.(1498-1500)CGA>CTA	p.R500L		NM_014139	NP_054858	Q9UI33	SCNBA_HUMAN	sodium channel, voltage-gated, type XI, alpha	500					response to drug	voltage-gated sodium channel complex	voltage-gated sodium channel activity			skin(6)|ovary(1)|haematopoietic_and_lymphoid_tissue(1)|pancreas(1)	9				Kidney(284;0.00202)|KIRC - Kidney renal clear cell carcinoma(284;0.00226)	Cocaine(DB00907)	CTGGGACAGTCGTTTGGTTTG	0.493000													28	126					2.49675e-24	2.61426e-24	1	1	0
ZNF619	285267	broad.mit.edu	37	3	40528735	40528735	+	Nonsense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr3:40528735C>G	uc011azb.1	+	6	1132	c.854C>G	c.(853-855)TCA>TGA	p.S285*	ZNF619_uc010hhz.2_Nonsense_Mutation_p.S236*|ZNF619_uc003ckj.2_Nonsense_Mutation_p.S229*|ZNF619_uc011azc.1_Nonsense_Mutation_p.S245*|ZNF619_uc011azd.1_Nonsense_Mutation_p.S201*|ZNF619_uc011aza.1_Nonsense_Mutation_p.S187*	NM_001145082	NP_001138554	E9PCD9	E9PCD9_HUMAN	zinc finger protein 619 isoform 1	285					regulation of transcription, DNA-dependent	intracellular	nucleic acid binding|zinc ion binding			ovary(1)	1				KIRC - Kidney renal clear cell carcinoma(284;0.0525)|Kidney(284;0.0661)		AGATATAACTCAAAACTGTCA	0.428000													20	69					0	0	1	0	0
C3orf39	84892	broad.mit.edu	37	3	43122913	43122913	+	Missense_Mutation	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr3:43122913G>A	uc003cmq.1	-	2	152	c.11C>T	c.(10-12)TCG>TTG	p.S4L	C3orf39_uc003cmr.1_Missense_Mutation_p.S4L	NM_032806	NP_116195	Q8NAT1	AGO61_HUMAN	glycosyltransferase precursor	4						extracellular region	transferase activity, transferring glycosyl groups			ovary(1)|skin(1)	2				KIRC - Kidney renal clear cell carcinoma(284;0.0571)|Kidney(284;0.0718)		GAACACCGCCGAGAGGTGCAT	0.637000													7	22					0	0	1	0	0
KIF15	56992	broad.mit.edu	37	3	44826351	44826351	+	Missense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr3:44826351G>C	uc003cnx.3	+	6	525	c.376G>C	c.(376-378)GAT>CAT	p.D126H	KIF15_uc010hiq.2_Missense_Mutation_p.D29H	NM_020242	NP_064627	Q9NS87	KIF15_HUMAN	kinesin family member 15	126	Kinesin-motor.				blood coagulation|cell proliferation|microtubule-based movement|mitosis	centrosome|cytosol|microtubule|plus-end kinesin complex|spindle	ATP binding|DNA binding|microtubule motor activity			ovary(1)	1				BRCA - Breast invasive adenocarcinoma(193;0.0099)|KIRC - Kidney renal clear cell carcinoma(197;0.0564)|Kidney(197;0.0707)		ATCTGAATCTGATAATTTTTC	0.279000													5	31					0	0	1	0	0
CDCP1	64866	broad.mit.edu	37	3	45152247	45152247	+	Missense_Mutation	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr3:45152247C>T	uc003com.2	-	4	877	c.742G>A	c.(742-744)GAG>AAG	p.E248K	CDCP1_uc003con.2_Missense_Mutation_p.E248K	NM_022842	NP_073753	Q9H5V8	CDCP1_HUMAN	CUB domain-containing protein 1 isoform 1	248	Extracellular (Potential).					extracellular region|integral to membrane|plasma membrane				ovary(1)|central_nervous_system(1)|skin(1)	3				BRCA - Breast invasive adenocarcinoma(193;0.00928)|KIRC - Kidney renal clear cell carcinoma(197;0.0519)|Kidney(197;0.0651)		GTCATGAGCTCATCCTCAGGG	0.562000													57	245					0	0	1	0	0
TDGF1	6997	broad.mit.edu	37	3	46620626	46620626	+	Missense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr3:46620626G>C	uc003cpv.2	+	2	357	c.77G>C	c.(76-78)GGA>GCA	p.G26A	LRRC2_uc003cpu.3_Intron	NM_003212	NP_003203	P13385	TDGF1_HUMAN	teratocarcinoma-derived growth factor 1	26					activation of MAPK activity|anterior/posterior axis specification, embryo|mammary gland development|morphogenesis of a branching structure|negative regulation of apoptosis|peptidyl-serine phosphorylation|positive regulation of cell migration|positive regulation of peptidyl-tyrosine phosphorylation	anchored to membrane|cell surface|extrinsic to plasma membrane	growth factor activity				0				BRCA - Breast invasive adenocarcinoma(193;0.00114)|KIRC - Kidney renal clear cell carcinoma(197;0.0173)|Kidney(197;0.0204)		TTTGAACTGGGATTAGTTGCC	0.383000													25	151					0	0	1	0	0
NBEAL2	23218	broad.mit.edu	37	3	47042572	47042572	+	Missense_Mutation	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr3:47042572G>A	uc003cqp.2	+	28	4566	c.4387G>A	c.(4387-4389)GAG>AAG	p.E1463K	NBEAL2_uc010hjm.1_Missense_Mutation_p.E840K|NBEAL2_uc010hjn.1_5'Flank	NM_015175	NP_055990	Q6ZNJ1	NBEL2_HUMAN	neurobeachin-like 2	1463							binding			ovary(1)	1		Acute lymphoblastic leukemia(5;0.0534)		BRCA - Breast invasive adenocarcinoma(193;0.0012)|KIRC - Kidney renal clear cell carcinoma(197;0.00575)|Kidney(197;0.00656)		AGGCAGCGATGAGGCTGCCTG	0.627000													3	15					0	0	1	0	0
ATRIP	84126	broad.mit.edu	37	3	48501272	48501272	+	Missense_Mutation	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr3:48501272G>A	uc003ctf.1	+	7	1044	c.1012G>A	c.(1012-1014)GAG>AAG	p.E338K	ATRIP_uc011bbj.1_Missense_Mutation_p.E211K|ATRIP_uc003ctg.1_Missense_Mutation_p.E338K|TREX1_uc010hjy.2_5'UTR	NM_130384	NP_569055	Q8WXE1	ATRIP_HUMAN	ATR interacting protein isoform 1	338					DNA damage checkpoint|DNA repair|DNA replication	nucleoplasm	protein binding|protein serine/threonine kinase activity			ovary(1)	1				BRCA - Breast invasive adenocarcinoma(193;0.000293)|KIRC - Kidney renal clear cell carcinoma(197;0.00558)|Kidney(197;0.00632)		TAGTAGTTCTGAGTCTCCTGC	0.522000								Other_conserved_DNA_damage_response_genes					6	306					0	0	1	0	0
CELSR3	1951	broad.mit.edu	37	3	48667573	48667573	+	Silent	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr3:48667573G>A	uc003cuf.1	-	48	11559	c.11559C>T	c.(11557-11559)ATC>ATT	p.I3853I	SLC26A6_uc003cug.2_Silent_p.I427I|SLC26A6_uc003cuh.2_Silent_p.I448I|SLC26A6_uc010hke.2_Silent_p.I299I|SLC26A6_uc003cuk.2_Silent_p.I341I|SLC26A6_uc003cui.2_Silent_p.I448I|SLC26A6_uc003cuj.2_Silent_p.I448I|SLC26A6_uc011bbp.1_Silent_p.I412I	NM_001407	NP_001398	Q9NYQ7	CELR3_HUMAN	cadherin EGF LAG seven-pass G-type receptor 3	Error:Variant_position_missing_in_Q9NYQ7_after_alignment					homophilic cell adhesion|multicellular organismal development|neuropeptide signaling pathway	integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity|protein binding			ovary(5)|upper_aerodigestive_tract(2)|central_nervous_system(2)|skin(2)	11				BRCA - Breast invasive adenocarcinoma(193;0.000292)|KIRC - Kidney renal clear cell carcinoma(197;0.00549)|Kidney(197;0.00619)		TCACAATGATGATGGCTGCCA	0.632000													27	87					0	0	1	0	0
CELSR3	1951	broad.mit.edu	37	3	48699501	48699501	+	Silent	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr3:48699501C>T	uc003cul.2	-	1	848	c.567G>A	c.(565-567)CGG>CGA	p.R189R	CELSR3_uc003cuf.1_Silent_p.R259R	NM_001407	NP_001398	Q9NYQ7	CELR3_HUMAN	cadherin EGF LAG seven-pass G-type receptor 3	189	Extracellular (Potential).				homophilic cell adhesion|multicellular organismal development|neuropeptide signaling pathway	integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity|protein binding			ovary(5)|upper_aerodigestive_tract(2)|central_nervous_system(2)|skin(2)	11				BRCA - Breast invasive adenocarcinoma(193;0.000292)|KIRC - Kidney renal clear cell carcinoma(197;0.00549)|Kidney(197;0.00619)		TCCCAGCGTTCCGCTGGGAGG	0.652000													41	140					0	0	1	0	0
WDR6	11180	broad.mit.edu	37	3	49049138	49049138	+	Silent	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr3:49049138G>A	uc003cvj.2	+	2	399	c.261G>A	c.(259-261)CAG>CAA	p.Q87Q	WDR6_uc011bbx.1_Intron|WDR6_uc011bby.1_Intron|WDR6_uc010hkn.2_Silent_p.Q31Q|WDR6_uc011bbz.1_Silent_p.Q6Q	NM_018031	NP_060501	Q9NNW5	WDR6_HUMAN	WD repeat domain 6 protein	57					cell cycle arrest|negative regulation of cell proliferation	cytoplasm				central_nervous_system(1)	1				Kidney(197;9.12e-07)|KIRC - Kidney renal clear cell carcinoma(197;1.32e-05)|BRCA - Breast invasive adenocarcinoma(193;8.01e-05)|OV - Ovarian serous cystadenocarcinoma(275;0.000155)		AGCGAGTGCAGAACCTGCTTG	0.547000													111	311					0	0	1	0	0
USP4	7375	broad.mit.edu	37	3	49349008	49349008	+	Missense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr3:49349008G>C	uc003cwq.2	-	7	854	c.775C>G	c.(775-777)CTC>GTC	p.L259V	USP4_uc003cwo.2_5'UTR|USP4_uc003cwp.2_5'UTR|USP4_uc003cwr.2_Intron	NM_003363	NP_003354	Q13107	UBP4_HUMAN	ubiquitin specific protease 4 isoform a	259					negative regulation of protein ubiquitination|protein deubiquitination|protein localization at cell surface|regulation of protein stability|ubiquitin-dependent protein catabolic process	lysosome|nucleus	adenosine receptor binding|protein binding|ubiquitin thiolesterase activity|ubiquitin-specific protease activity			ovary(2)|urinary_tract(1)|lung(1)	4		Ovarian(412;0.00308)|Myeloproliferative disorder(1037;0.0255)|Hepatocellular(537;0.121)		OV - Ovarian serous cystadenocarcinoma(275;4.74e-26)|Kidney(197;2.22e-07)|KIRC - Kidney renal clear cell carcinoma(197;5.14e-06)|BRCA - Breast invasive adenocarcinoma(193;9.46e-05)		TTTGCAATGAGAGAGGCAGAC	0.507000													19	95					0	0	1	0	0
RHOA	387	broad.mit.edu	37	3	49400019	49400019	+	Missense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr3:49400019G>C	uc003cwu.2	-	4	594	c.318C>G	c.(316-318)TTC>TTG	p.F106L	RHOA_uc010hku.2_Missense_Mutation_p.F25L	NM_001664	NP_001655	P61586	RHOA_HUMAN	ras homolog gene family, member A precursor	106					axon guidance|interspecies interaction between organisms|negative regulation of axonogenesis|nerve growth factor receptor signaling pathway|phosphatidylinositol-mediated signaling|platelet activation|positive regulation of axonogenesis|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of neuron differentiation|positive regulation of NF-kappaB import into nucleus|positive regulation of stress fiber assembly|regulation of cell migration|regulation of small GTPase mediated signal transduction|Rho protein signal transduction|spindle assembly involved in mitosis	cytoskeleton|cytosol|plasma membrane	GTP binding|GTPase activity|myosin binding			ovary(2)	2				BRCA - Breast invasive adenocarcinoma(193;8.58e-05)|Kidney(197;0.0023)|KIRC - Kidney renal clear cell carcinoma(197;0.00258)	Atorvastatin(DB01076)|Simvastatin(DB00641)	CGTTGGGACAGAAATGCTTGA	0.443000													30	104					0	0	1	0	0
BSN	8927	broad.mit.edu	37	3	49694913	49694913	+	Missense_Mutation	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr3:49694913G>A	uc003cxe.3	+	5	8038	c.7924G>A	c.(7924-7926)GAC>AAC	p.D2642N		NM_003458	NP_003449	Q9UPA5	BSN_HUMAN	bassoon protein	2642					synaptic transmission	cell junction|cytoplasm|cytoskeleton|nucleus|synaptosome	metal ion binding			ovary(5)|pancreas(1)|central_nervous_system(1)|skin(1)	8				BRCA - Breast invasive adenocarcinoma(193;6.66e-05)|KIRC - Kidney renal clear cell carcinoma(197;0.0032)|Kidney(197;0.00336)		CTCAGGCTCTGACAGCAAGCA	0.622000													14	40					0	0	1	0	0
RNF123	63891	broad.mit.edu	37	3	49751254	49751254	+	Missense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr3:49751254G>C	uc003cxh.2	+	29	2919	c.2833G>C	c.(2833-2835)GAG>CAG	p.E945Q	RNF123_uc003cxi.2_RNA	NM_022064	NP_071347	Q5XPI4	RN123_HUMAN	ring finger protein 123	945						cytoplasm	ligase activity|protein binding|zinc ion binding			kidney(3)|ovary(1)|lung(1)|breast(1)|skin(1)	7				BRCA - Breast invasive adenocarcinoma(193;4.71e-05)|Kidney(197;0.00227)|KIRC - Kidney renal clear cell carcinoma(197;0.00255)		AATCCCCGAGGAGCAGTGAGT	0.662000													13	29					0	0	1	0	0
MON1A	84315	broad.mit.edu	37	3	49946585	49946585	+	Silent	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr3:49946585C>T	uc003cxz.2	-	6	1947	c.1821G>A	c.(1819-1821)GTG>GTA	p.V607V	MON1A_uc003cya.2_Silent_p.V445V|MON1A_uc003cyb.2_3'UTR	NM_032355	NP_115731	Q86VX9	MON1A_HUMAN	MON1 homolog A isoform a	510							protein binding			ovary(2)	2				BRCA - Breast invasive adenocarcinoma(193;4.62e-05)|KIRC - Kidney renal clear cell carcinoma(197;0.00551)|Kidney(197;0.00621)		AGGCGCCTGTCACCTGGAGAA	0.592000													17	53					0	0	1	0	0
RBM5	10181	broad.mit.edu	37	3	50137419	50137419	+	Missense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr3:50137419G>C	uc003cyg.2	+	5	492	c.344G>C	c.(343-345)CGA>CCA	p.R115P	RBM6_uc010hld.1_RNA|RBM6_uc010hle.1_RNA|RBM6_uc010hlf.1_RNA|RBM5_uc003cyf.2_Missense_Mutation_p.R115P|RBM5_uc011bdj.1_Missense_Mutation_p.R59P|RBM5_uc011bdk.1_5'UTR	NM_005778	NP_005769	P52756	RBM5_HUMAN	RNA binding motif protein 5	115	RRM 1.				apoptosis|negative regulation of cell proliferation|positive regulation of apoptosis|regulation of alternative nuclear mRNA splicing, via spliceosome|spliceosome assembly	nucleoplasm|spliceosomal complex	DNA binding|mRNA binding|nucleotide binding|protein binding|zinc ion binding			lung(1)	1				BRCA - Breast invasive adenocarcinoma(193;0.000121)|KIRC - Kidney renal clear cell carcinoma(197;0.00558)|Kidney(197;0.00632)		GTGCAGATTCGAGAAATGATG	0.413000													8	32					0	0	1	0	0
RBM5	10181	broad.mit.edu	37	3	50151469	50151469	+	Missense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr3:50151469G>C	uc003cyg.2	+	19	1852	c.1704G>C	c.(1702-1704)TTG>TTC	p.L568F	RBM5_uc011bdj.1_Missense_Mutation_p.L512F|RBM5_uc011bdk.1_Missense_Mutation_p.L396F|RBM5_uc003cyh.2_Missense_Mutation_p.L25F	NM_005778	NP_005769	P52756	RBM5_HUMAN	RNA binding motif protein 5	568	Required for interaction with U2AF2.				apoptosis|negative regulation of cell proliferation|positive regulation of apoptosis|regulation of alternative nuclear mRNA splicing, via spliceosome|spliceosome assembly	nucleoplasm|spliceosomal complex	DNA binding|mRNA binding|nucleotide binding|protein binding|zinc ion binding			lung(1)	1				BRCA - Breast invasive adenocarcinoma(193;0.000121)|KIRC - Kidney renal clear cell carcinoma(197;0.00558)|Kidney(197;0.00632)		TCAATTCCTTGAGGGAAGAAG	0.423000													21	63					0	0	1	0	0
SLC38A3	10991	broad.mit.edu	37	3	50252126	50252126	+	Silent	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr3:50252126C>T	uc003cyn.3	+	4	366	c.225C>T	c.(223-225)CTC>CTT	p.L75L	SLC38A3_uc011bdl.1_Missense_Mutation_p.S75L|SLC38A3_uc011bdm.1_Silent_p.L6L	NM_006841	NP_006832	Q99624	S38A3_HUMAN	solute carrier family 38, member 3	75					cellular nitrogen compound metabolic process|sodium ion transport	integral to plasma membrane	antiporter activity|L-alanine transmembrane transporter activity|L-asparagine transmembrane transporter activity|L-glutamine transmembrane transporter activity|L-histidine transmembrane transporter activity|symporter activity			breast(1)	1				BRCA - Breast invasive adenocarcinoma(193;0.000275)|KIRC - Kidney renal clear cell carcinoma(197;0.00548)|Kidney(197;0.00615)	L-Asparagine(DB00174)|L-Glutamine(DB00130)|L-Histidine(DB00117)	TGTTCAACCTCAGCAATGCCA	0.562000													5	25					0	0	1	0	0
IFRD2	7866	broad.mit.edu	37	3	50327471	50327471	+	Silent	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr3:50327471G>A	uc011bdp.1	-	5	756	c.627C>T	c.(625-627)CTC>CTT	p.L209L	IFRD2_uc003czb.2_Silent_p.L311L	NM_006764	NP_006755	Q12894	IFRD2_HUMAN	interferon-related developmental regulator 2	209							binding			lung(2)|ovary(1)	3				BRCA - Breast invasive adenocarcinoma(193;0.000272)|KIRC - Kidney renal clear cell carcinoma(197;0.00544)|Kidney(197;0.00607)		GCTGCACGCAGAGCAGGCCTA	0.622000													8	23					0	0	1	0	0
HYAL1	3373	broad.mit.edu	37	3	50337989	50337989	+	Missense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr3:50337989C>G	uc003czp.2	-	4	1365	c.1233G>C	c.(1231-1233)CAG>CAC	p.Q411H	HYAL3_uc003czc.1_5'Flank|HYAL3_uc003czd.1_5'Flank|HYAL3_uc003cze.1_5'Flank|HYAL3_uc003czf.1_5'Flank|HYAL3_uc003czg.1_5'Flank|NAT6_uc003czi.2_5'Flank|NAT6_uc003czj.2_5'Flank|NAT6_uc003czk.3_5'Flank|NAT6_uc003czl.1_5'Flank|HYAL1_uc003czm.2_Missense_Mutation_p.Q229H|HYAL1_uc003czo.2_Missense_Mutation_p.Q152H|HYAL1_uc003czq.2_Missense_Mutation_p.Q381H|HYAL1_uc003czr.2_Missense_Mutation_p.Q411H|HYAL1_uc003czn.2_Missense_Mutation_p.Q72H|HYAL1_uc003czs.2_Missense_Mutation_p.Q411H|HYAL1_uc003czt.2_3'UTR	NM_033159	NP_149349	Q12794	HYAL1_HUMAN	hyaluronoglucosaminidase 1 isoform 1	411	EGF-like.					extracellular space|lysosome	hyalurononglucosaminidase activity			lung(1)	1				BRCA - Breast invasive adenocarcinoma(193;0.000272)|KIRC - Kidney renal clear cell carcinoma(197;0.00544)|Kidney(197;0.00607)	Hyaluronidase(DB00070)	CCACAGCCATCTGTGCCTGAT	0.592000													33	126					0	0	1	0	0
MIR135A1	406925	broad.mit.edu	37	3	52328287	52328287	+	RNA	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr3:52328287C>G	hsa-mir-135a-1|MI0000452	-			c.38C>G			GLYCTK_uc003ddm.2_RNA|GLYCTK_uc003ddo.2_3'UTR|GLYCTK_uc003ddn.2_RNA|GLYCTK_uc003ddr.2_3'UTR|uc010hmf.2_RNA																	0						GCAGTAGAATCACATAGGAAT	0.592000													49	147					0	0	1	0	0
DNAH1	25981	broad.mit.edu	37	3	52417975	52417975	+	Silent	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr3:52417975G>A	uc011bef.1	+	52	8511	c.8250G>A	c.(8248-8250)CTG>CTA	p.L2750L	DNAH1_uc003ddv.2_5'Flank	NM_015512	NP_056327	Q9P2D7	DYH1_HUMAN	dynein, axonemal, heavy chain 1	2750	AAA 4 (By similarity).				ciliary or flagellar motility|microtubule-based movement|response to mechanical stimulus	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			large_intestine(3)	3				BRCA - Breast invasive adenocarcinoma(193;2.02e-05)|OV - Ovarian serous cystadenocarcinoma(275;0.000207)|Kidney(197;0.0022)|KIRC - Kidney renal clear cell carcinoma(197;0.00245)		CAGAAGCCCTGAAGTCTGTGG	0.572000													6	23					0	0	1	0	0
DNAH1	25981	broad.mit.edu	37	3	52432098	52432098	+	Silent	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr3:52432098C>T	uc011bef.1	+	75	12270	c.12009C>T	c.(12007-12009)ATC>ATT	p.I4003I	DNAH1_uc003ddv.2_Silent_p.I861I	NM_015512	NP_056327	Q9P2D7	DYH1_HUMAN	dynein, axonemal, heavy chain 1	4068					ciliary or flagellar motility|microtubule-based movement|response to mechanical stimulus	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			large_intestine(3)	3				BRCA - Breast invasive adenocarcinoma(193;2.02e-05)|OV - Ovarian serous cystadenocarcinoma(275;0.000207)|Kidney(197;0.0022)|KIRC - Kidney renal clear cell carcinoma(197;0.00245)		CTGAGCCTATCAACTTGCAAT	0.517000													21	57					0	0	1	0	0
NEK4	6787	broad.mit.edu	37	3	52785972	52785972	+	Missense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr3:52785972G>C	uc003dfq.3	-	7	1533	c.1344C>G	c.(1342-1344)ATC>ATG	p.I448M	NEK4_uc011bej.1_Missense_Mutation_p.I359M|NEK4_uc003dfr.2_Missense_Mutation_p.I448M	NM_003157	NP_003148	P51957	NEK4_HUMAN	NIMA-related kinase 4	448					cell division|mitosis	nucleus	ATP binding|metal ion binding|protein serine/threonine kinase activity			large_intestine(1)	1				BRCA - Breast invasive adenocarcinoma(193;7.44e-05)|Kidney(197;0.000711)|KIRC - Kidney renal clear cell carcinoma(197;0.00086)|OV - Ovarian serous cystadenocarcinoma(275;0.0513)		TTTGTTCTTTGATTAGGGGCT	0.458000													42	133					0	0	1	0	0
DCP1A	55802	broad.mit.edu	37	3	53326674	53326674	+	Missense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr3:53326674G>C	uc003dgs.3	-	7	901	c.808C>G	c.(808-810)CAA>GAA	p.Q270E	DCP1A_uc003dgt.3_RNA	NM_018403	NP_060873	Q9NPI6	DCP1A_HUMAN	DCP1 decapping enzyme homolog A	270					exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay|nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	cytoplasmic mRNA processing body|cytosol|nucleus	hydrolase activity|protein binding				0				BRCA - Breast invasive adenocarcinoma(193;0.000164)|KIRC - Kidney renal clear cell carcinoma(197;0.00525)|Kidney(197;0.00579)|OV - Ovarian serous cystadenocarcinoma(275;0.0647)		GTTTCTGATTGAGGGGCTCCT	0.527000													8	29					0	0	1	0	0
CACNA1D	776	broad.mit.edu	37	3	53781446	53781446	+	Missense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr3:53781446C>G	uc003dgv.3	+	26	3448	c.3285C>G	c.(3283-3285)TTC>TTG	p.F1095L	CACNA1D_uc003dgu.3_Missense_Mutation_p.F1115L|CACNA1D_uc003dgy.3_Missense_Mutation_p.F1095L|CACNA1D_uc003dgw.3_Missense_Mutation_p.F762L|CACNA1D_uc003dgx.1_Missense_Mutation_p.F243L	NM_001128840	NP_001122312	Q01668	CAC1D_HUMAN	calcium channel, voltage-dependent, L type,	1095	Extracellular (Potential).|Dihydropyridine binding (By similarity).|III.				axon guidance|energy reserve metabolic process|regulation of insulin secretion	voltage-gated calcium channel complex	voltage-gated calcium channel activity			ovary(6)|upper_aerodigestive_tract(2)|liver(1)|central_nervous_system(1)|skin(1)	11				BRCA - Breast invasive adenocarcinoma(193;0.00029)|KIRC - Kidney renal clear cell carcinoma(284;0.0145)|Kidney(284;0.0175)|OV - Ovarian serous cystadenocarcinoma(275;0.0613)	Verapamil(DB00661)	TGGCGCTCTTCACAGTCTCCA	0.567000													5	177					0	0	1	0	0
ARHGEF3	50650	broad.mit.edu	37	3	56763299	56763299	+	Nonstop_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr3:56763299C>G	uc003dig.2	-	10	1749	c.1580G>C	c.(1579-1581)TGA>TCA	p.*527S	ARHGEF3_uc011bew.1_Nonstop_Mutation_p.*527S|ARHGEF3_uc003dih.2_Nonstop_Mutation_p.*559S|ARHGEF3_uc011bev.1_Nonstop_Mutation_p.*498S|ARHGEF3_uc003dif.2_Nonstop_Mutation_p.*533S|ARHGEF3_uc010hmy.1_Nonstop_Mutation_p.*325S	NM_019555	NP_062455	Q9NR81	ARHG3_HUMAN	Rho guanine nucleotide exchange factor 3 isoform	527					apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|Rho protein signal transduction	cytosol	Rho guanyl-nucleotide exchange factor activity			ovary(1)	1				KIRC - Kidney renal clear cell carcinoma(284;0.0161)|Kidney(284;0.019)|OV - Ovarian serous cystadenocarcinoma(275;0.193)		ATGCTTCTGTCAGACGTTACT	0.493000													6	39					0	0	1	0	0
DNAH12	201625	broad.mit.edu	37	3	57528516	57528516	+	Missense_Mutation	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr3:57528516C>T	uc003dit.2	-	2	263	c.82G>A	c.(82-84)GAA>AAA	p.E28K	DNAH12_uc003diu.2_Missense_Mutation_p.E28K	NM_178504	NP_848599	Q6ZR08	DYH12_HUMAN	dynein heavy chain domain 2 isoform 1	28	Stem (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|dynein complex|microtubule	ATP binding|ATPase activity|microtubule motor activity			pancreas(1)|skin(1)	2						CCTATGTTTTCTGGGAGATGG	0.413000													4	161					0	0	1	0	0
PXK	54899	broad.mit.edu	37	3	58394714	58394714	+	Missense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr3:58394714G>C	uc003djz.1	+	14	1393	c.1294G>C	c.(1294-1296)GAG>CAG	p.E432Q	PXK_uc003djx.1_Missense_Mutation_p.E432Q|PXK_uc003djy.1_Missense_Mutation_p.E415Q|PXK_uc003dka.1_Missense_Mutation_p.E432Q|PXK_uc003dkb.1_Missense_Mutation_p.E349Q|PXK_uc003dkc.1_Missense_Mutation_p.E415Q|PXK_uc011bfe.1_Missense_Mutation_p.E399Q|PXK_uc010hnj.1_Missense_Mutation_p.E399Q|PXK_uc003dkd.1_Missense_Mutation_p.E295Q|PXK_uc010hnk.1_Missense_Mutation_p.E206Q	NM_017771	NP_060241	Q7Z7A4	PXK_HUMAN	PX domain containing serine/threonine kinase	432	Protein kinase.				cell communication|inflammatory response|negative regulation of ATPase activity|negative regulation of ion transport|regulation of synaptic transmission	centrosome|cytoplasm|nucleus|plasma membrane	actin binding|ATP binding|phosphatidylinositol binding|phosphatidylinositol binding|protein C-terminus binding|protein kinase activity			ovary(1)	1				BRCA - Breast invasive adenocarcinoma(55;0.000249)|KIRC - Kidney renal clear cell carcinoma(10;0.00346)|Kidney(10;0.00368)|OV - Ovarian serous cystadenocarcinoma(275;0.22)		GAGACTAATTGAGGAACAGAA	0.383000													16	59					0	0	1	0	0
ADAMTS9	56999	broad.mit.edu	37	3	64536684	64536684	+	Missense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr3:64536684C>G	uc003dmg.2	-	31	4785	c.4753G>C	c.(4753-4755)GAC>CAC	p.D1585H	ADAMTS9_uc011bfo.1_Missense_Mutation_p.D1557H|ADAMTS9_uc003dmh.1_Missense_Mutation_p.D1414H|ADAMTS9_uc011bfp.1_Missense_Mutation_p.D496H	NM_182920	NP_891550	Q9P2N4	ATS9_HUMAN	ADAM metallopeptidase with thrombospondin type 1	1585	TSP type-1 13.				glycoprotein catabolic process|multicellular organismal development|proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			ovary(2)|urinary_tract(1)|skin(1)	4		Lung NSC(201;0.00682)		BRCA - Breast invasive adenocarcinoma(55;0.00142)|Kidney(15;0.00202)|KIRC - Kidney renal clear cell carcinoma(15;0.00221)		TTTTTGTTGTCATCCACACAC	0.517000													42	192					0	0	1	0	0
TMF1	7110	broad.mit.edu	37	3	69073265	69073265	+	Missense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr3:69073265G>C	uc003dnn.2	-	16	3326	c.3079C>G	c.(3079-3081)CAA>GAA	p.Q1027E	TMF1_uc011bfx.1_Missense_Mutation_p.Q1030E	NM_007114	NP_009045	P82094	TMF1_HUMAN	TATA element modulatory factor 1	1027	Potential.				regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter	Golgi membrane|nucleus	DNA binding|protein binding|transcription cofactor activity				0		Lung NSC(201;0.0193)|Prostate(884;0.174)		BRCA - Breast invasive adenocarcinoma(55;4.48e-05)|Epithelial(33;0.000274)|LUSC - Lung squamous cell carcinoma(21;0.0123)|KIRC - Kidney renal clear cell carcinoma(39;0.211)|Kidney(39;0.247)		TCATCATTTTGATTTGTTAAT	0.323000													36	71					0	0	1	0	0
ROBO2	6092	broad.mit.edu	37	3	77623803	77623803	+	Missense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr3:77623803G>C	uc003dpy.3	+	14	2768	c.2125G>C	c.(2125-2127)GAA>CAA	p.E709Q	ROBO2_uc003dpz.2_Missense_Mutation_p.E713Q|ROBO2_uc011bgj.1_RNA|ROBO2_uc011bgk.1_Missense_Mutation_p.E713Q	NM_002942	NP_002933	Q9HCK4	ROBO2_HUMAN	roundabout, axon guidance receptor, homolog 2	709	Fibronectin type-III 2.|Extracellular (Potential).				apoptosis involved in luteolysis|axon midline choice point recognition|cellular response to hormone stimulus|homophilic cell adhesion|metanephros development|negative regulation of negative chemotaxis|negative regulation of synaptogenesis|olfactory bulb interneuron development|positive regulation of axonogenesis|retinal ganglion cell axon guidance|ureteric bud development	axolemma|cell surface|integral to membrane	axon guidance receptor activity|identical protein binding			lung(5)|skin(3)|ovary(1)|large_intestine(1)|liver(1)	11				Epithelial(33;0.00199)|LUSC - Lung squamous cell carcinoma(21;0.008)|BRCA - Breast invasive adenocarcinoma(55;0.00884)|Lung(72;0.0183)|KIRC - Kidney renal clear cell carcinoma(39;0.0832)|Kidney(39;0.103)		GGTGACTTATGAAATTAAAGT	0.413000													20	69					0	0	1	0	0
CRYBG3	131544	broad.mit.edu	37	3	97596225	97596225	+	Missense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr3:97596225G>C	uc003drx.2	+	1	407	c.343G>C	c.(343-345)GAT>CAT	p.D115H		NM_153605	NP_705833			beta-gamma crystallin domain containing 3												0						TGAGACATTTGATAGTGATAG	0.413000													24	104					0	0	1	0	0
FILIP1L	11259	broad.mit.edu	37	3	99569565	99569565	+	Missense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr3:99569565G>C	uc003dtm.2	-	5	1418	c.955C>G	c.(955-957)CAA>GAA	p.Q319E	C3orf26_uc003dtk.1_Intron|C3orf26_uc003dtl.2_Intron|FILIP1L_uc003dto.2_Missense_Mutation_p.Q319E|FILIP1L_uc010hpf.2_Intron|FILIP1L_uc010hpg.2_Missense_Mutation_p.Q79E|FILIP1L_uc003dtn.2_Missense_Mutation_p.Q79E|FILIP1L_uc003dtp.1_Missense_Mutation_p.Q79E	NM_182909	NP_878913	Q4L180	FIL1L_HUMAN	filamin A interacting protein 1-like isoform 1	319	Potential.					cytoplasm|membrane|myosin complex|nucleus				ovary(1)	1						TGGCGATTTTGACTGTCCTCA	0.478000													84	243					0	0	1	0	0
IMPG2	50939	broad.mit.edu	37	3	100992563	100992563	+	Silent	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr3:100992563C>G	uc003duq.1	-	7	893	c.690G>C	c.(688-690)GTG>GTC	p.V230V	IMPG2_uc011bhe.1_Silent_p.V93V	NM_016247	NP_057331	Q9BZV3	IMPG2_HUMAN	interphotoreceptor matrix proteoglycan 2	230	Extracellular (Potential).				visual perception	integral to membrane|proteinaceous extracellular matrix	extracellular matrix structural constituent|heparin binding|hyaluronic acid binding|receptor activity			ovary(2)|haematopoietic_and_lymphoid_tissue(1)	3						CTTCTTCTATCACATTCTCAA	0.318000													5	87					0	0	1	0	0
CEP97	79598	broad.mit.edu	37	3	101447778	101447778	+	Silent	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr3:101447778G>A	uc003dvk.1	+	4	471	c.444G>A	c.(442-444)CTG>CTA	p.L148L	CEP97_uc010hpm.1_Intron|CEP97_uc011bhf.1_Silent_p.L148L|CEP97_uc003dvl.1_Intron	NM_024548	NP_078824	Q8IW35	CEP97_HUMAN	centrosomal protein 97kDa	148	LRR 6.					centrosome|nucleus	protein binding			ovary(2)	2						TGGTATCCCTGAAAGTAAGTA	0.358000													18	64					0	0	1	0	0
MYH15	22989	broad.mit.edu	37	3	108189047	108189047	+	Missense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr3:108189047C>G	uc003dxa.1	-	15	1513	c.1456G>C	c.(1456-1458)GAG>CAG	p.E486Q		NM_014981	NP_055796	Q9Y2K3	MYH15_HUMAN	myosin, heavy polypeptide 15	486	Myosin head-like.					myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity			ovary(5)|central_nervous_system(2)	7						CAAAGTTGCTCAAGGCTATTA	0.308000													9	68					0	0	1	0	0
MYH15	22989	broad.mit.edu	37	3	108216993	108216993	+	Splice_Site	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr3:108216993C>G	uc003dxa.1	-	7	642	c.585_splice	c.e7-1	p.T195_splice		NM_014981	NP_055796	Q9Y2K3	MYH15_HUMAN	myosin, heavy polypeptide 15							myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity			ovary(5)|central_nervous_system(2)	7						AGATTCTCCTCTGTGATTTGA	0.323000													4	151					0	0	1	0	0
PVRL3	25945	broad.mit.edu	37	3	110852841	110852841	+	Missense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr3:110852841C>G	uc003dxt.1	+	6	1429	c.1429C>G	c.(1429-1431)CCA>GCA	p.P477A	PVRL3_uc003dxu.1_Intron	NM_015480	NP_056295	Q9NQS3	PVRL3_HUMAN	poliovirus receptor-related 3 precursor	477	Cytoplasmic (Potential).				adherens junction organization|cell junction assembly|homophilic cell adhesion	integral to membrane	cell adhesion molecule binding|protein homodimerization activity			upper_aerodigestive_tract(2)	2						AAACAAAAATCCAGTGAACAA	0.328000													12	30					0	0	1	0	0
BTLA	151888	broad.mit.edu	37	3	112190105	112190105	+	Silent	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr3:112190105G>A	uc003dza.3	-	3	704	c.501C>T	c.(499-501)CTC>CTT	p.L167L	BTLA_uc003dzb.3_Intron	NM_181780	NP_861445	Q7Z6A9	BTLA_HUMAN	B and T lymphocyte associated isoform 1	167	Helical; (Potential).				T cell costimulation		receptor activity				0		Acute lymphoblastic leukemia(4;1.34e-07)|all_hematologic(4;0.000361)				AGGTAGTGATGAGTAGAGGCA	0.512000													4	80					0	0	1	0	0
CD200R1	131450	broad.mit.edu	37	3	112642643	112642643	+	Missense_Mutation	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr3:112642643C>T	uc003dzk.1	-	7	1092	c.859G>A	c.(859-861)GAA>AAA	p.E287K	CD200R1_uc003dzj.1_Missense_Mutation_p.E310K|CD200R1_uc011bhx.1_Silent_p.*213*	NM_170780	NP_740750	Q8TD46	MO2R1_HUMAN	CD200 receptor 1 isoform d	287	Cytoplasmic (Potential).				interspecies interaction between organisms|regulation of immune response	extracellular region|integral to membrane|plasma membrane	receptor activity			ovary(2)|pancreas(1)	3						GGCTGCATTTCATCCTAAGAA	0.358000													17	72					0	0	1	0	0
LSAMP	4045	broad.mit.edu	37	3	115571444	115571444	+	Missense_Mutation	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr3:115571444C>T	uc003ebt.2	-	4	1035	c.535G>A	c.(535-537)GAA>AAA	p.E179K	LSAMP_uc011bis.1_Missense_Mutation_p.E179K	NM_002338	NP_002329	Q13449	LSAMP_HUMAN	limbic system-associated membrane protein	179	Ig-like C2-type 2.				cell adhesion|nervous system development	anchored to membrane|plasma membrane					0		all_cancers(1;0.00189)|all_epithelial(1;0.0366)|Myeloproliferative disorder(1037;0.17)|all_neural(597;0.208)|Lung NSC(201;0.215)		GBM - Glioblastoma multiforme(114;0.00117)|LUSC - Lung squamous cell carcinoma(41;0.0407)|Lung(219;0.152)		AGATATTCTTCTTCTCCTTCA	0.418000													4	127					0	0	1	0	0
C3orf30	152405	broad.mit.edu	37	3	118865512	118865512	+	Missense_Mutation	SNP	C	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr3:118865512C>A	uc003ecb.1	+	1	516	c.476C>A	c.(475-477)TCT>TAT	p.S159Y	IGSF11_uc003eby.2_5'Flank|IGSF11_uc003ebz.2_5'Flank|IGSF11_uc010hqs.2_5'Flank|C3orf30_uc011biw.1_Missense_Mutation_p.S159Y	NM_152539	NP_689752	Q96M34	CC030_HUMAN	hypothetical protein LOC152405	159										ovary(2)	2				GBM - Glioblastoma multiforme(114;0.222)		AGAAGAACTTCTGGGCAGATT	0.527000													25	86					3.28513e-13	3.41211e-13	1	1	0
GOLGB1	2804	broad.mit.edu	37	3	121410890	121410890	+	Missense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr3:121410890C>G	uc003eei.3	-	14	7432	c.7306G>C	c.(7306-7308)GAT>CAT	p.D2436H	GOLGB1_uc010hrc.2_Missense_Mutation_p.D2441H|GOLGB1_uc003eej.3_Missense_Mutation_p.D2402H	NM_004487	NP_004478	Q14789	GOGB1_HUMAN	golgi autoantigen, golgin subfamily b,	2436	Cytoplasmic (Potential).|Potential.				Golgi organization	ER-Golgi intermediate compartment|Golgi membrane|Golgi stack|integral to membrane	protein binding			ovary(6)|breast(2)|skin(2)	10				GBM - Glioblastoma multiforme(114;0.0989)		TTGGTTTTATCAACAGCCTTT	0.383000													50	144					0	0	1	0	0
PARP14	54625	broad.mit.edu	37	3	122432391	122432391	+	Nonsense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr3:122432391C>G	uc003efq.3	+	10	3799	c.3740C>G	c.(3739-3741)TCA>TGA	p.S1247*	PARP14_uc010hrk.2_RNA|PARP14_uc003efr.2_Nonsense_Mutation_p.S964*|PARP14_uc003efs.1_Nonsense_Mutation_p.S964*	NM_017554	NP_060024	Q460N5	PAR14_HUMAN	poly (ADP-ribose) polymerase family, member 14	1247	Macro 3.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus|plasma membrane	NAD+ ADP-ribosyltransferase activity			ovary(2)|breast(2)|lung(1)|pancreas(1)	6				GBM - Glioblastoma multiforme(114;0.0531)		ATTGTAAATTCAACATCAAAC	0.398000													19	62					0	0	1	0	0
MUC13	56667	broad.mit.edu	37	3	124635176	124635176	+	Missense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr3:124635176G>C	uc003ehq.1	-	6	973	c.949C>G	c.(949-951)CTA>GTA	p.L317V		NM_033049	NP_149038	Q9H3R2	MUC13_HUMAN	mucin 13, epithelial transmembrane	317	SEA.|Extracellular (Potential).					extracellular region|integral to membrane|plasma membrane					0						TCATAGTTTAGAAAGTTGCTT	0.308000													17	55					0	0	1	0	0
HEG1	57493	broad.mit.edu	37	3	124732322	124732322	+	Missense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr3:124732322G>C	uc003ehs.3	-	6	2169	c.2101C>G	c.(2101-2103)CTA>GTA	p.L701V	HEG1_uc011bke.1_Missense_Mutation_p.L801V	NM_020733	NP_065784	Q9ULI3	HEG1_HUMAN	HEG homolog 1 precursor	701	Extracellular (Potential).|Ser-rich.					extracellular region|integral to membrane	calcium ion binding			ovary(2)	2						GACTTTAGTAGATGCACAGAG	0.438000													10	58					0	0	1	0	0
OSBPL11	114885	broad.mit.edu	37	3	125282577	125282577	+	Missense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr3:125282577C>G	uc003eic.2	-	7	1716	c.979G>C	c.(979-981)GAG>CAG	p.E327Q		NM_022776	NP_073613	Q9BXB4	OSB11_HUMAN	oxysterol binding protein-like 11	327					lipid transport		lipid binding			ovary(3)|breast(1)|kidney(1)	5						ACAGGCTGCTCTTCTGGGACT	0.403000													30	120					0	0	1	0	0
CCDC37	348807	broad.mit.edu	37	3	126137952	126137952	+	Silent	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr3:126137952G>A	uc003eiu.1	+	8	783	c.684G>A	c.(682-684)AAG>AAA	p.K228K	CCDC37_uc010hsg.1_Silent_p.K229K	NM_182628	NP_872434	Q494V2	CCD37_HUMAN	coiled-coil domain containing 37	228										ovary(1)|skin(1)	2				GBM - Glioblastoma multiforme(114;0.166)		AGATAGAGAAGATCCTTGAGA	0.592000													3	12					0	0	1	0	0
ZXDC	79364	broad.mit.edu	37	3	126178541	126178541	+	Nonsense_Mutation	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr3:126178541G>A	uc003eiv.2	-	7	2221	c.2167C>T	c.(2167-2169)CAA>TAA	p.Q723*	ZXDC_uc010hsh.2_Intron|ZXDC_uc003eix.2_3'UTR	NM_025112	NP_079388	Q2QGD7	ZXDC_HUMAN	ZXD family zinc finger C isoform 1	723					positive regulation of transcription, DNA-dependent	nucleus	C2H2 zinc finger domain binding|identical protein binding|LRR domain binding|nucleic acid binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)	1				GBM - Glioblastoma multiforme(114;0.155)		TTGGCTAGTTGAATGGCTCGG	0.532000													7	567					0	0	1	0	0
MGLL	11343	broad.mit.edu	37	3	127439934	127439934	+	Silent	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr3:127439934G>A	uc003ejx.2	-	5	587	c.442C>T	c.(442-444)CTG>TTG	p.L148L	MGLL_uc003ejw.2_Silent_p.L158L|MGLL_uc011bko.1_Silent_p.L158L|MGLL_uc010hsp.1_Silent_p.L148L|MGLL_uc003ejv.2_Silent_p.L122L	NM_001003794	NP_001003794	Q99685	MGLL_HUMAN	monoglyceride lipase isoform 2	148					arachidonic acid metabolic process|fatty acid biosynthetic process|inflammatory response|platelet activation|regulation of endocannabinoid signaling pathway|regulation of inflammatory response|regulation of sensory perception of pain|triglyceride catabolic process	plasma membrane	acylglycerol lipase activity|carboxylesterase activity|lysophospholipase activity|protein homodimerization activity				0						GCAAGAACCAGAGGCGAAATG	0.552000													6	96					0	0	1	0	0
TRH	7200	broad.mit.edu	37	3	129694836	129694836	+	Missense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr3:129694836C>G	uc003enc.2	+	2	738	c.177C>G	c.(175-177)ATC>ATG	p.I59M		NM_007117	NP_009048	P20396	TRH_HUMAN	thyrotropin-releasing hormone	59					cell-cell signaling|hormone-mediated signaling pathway	extracellular region|soluble fraction	neuropeptide hormone activity|thyrotropin-releasing hormone activity			ovary(1)	1						GGGAAAACATCCAGCGGCTGC	0.677000													6	28					0	0	1	0	0
SLCO2A1	6578	broad.mit.edu	37	3	133654649	133654649	+	Missense_Mutation	SNP	C	T	T	rs150503809		TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr3:133654649C>T	uc003eqa.3	-	13	2057	c.1783G>A	c.(1783-1785)GCC>ACC	p.A595T	SLCO2A1_uc003eqb.3_Missense_Mutation_p.A519T	NM_005630	NP_005621	Q92959	SO2A1_HUMAN	solute carrier organic anion transporter family,	595	Extracellular (Potential).				sodium-independent organic anion transport	integral to plasma membrane|membrane fraction	prostaglandin transmembrane transporter activity|protein binding			central_nervous_system(1)	1						TCATAGTAGGCGCAGGCCCCT	0.597000													10	49					0	0	1	0	0
ZBTB38	253461	broad.mit.edu	37	3	141164290	141164290	+	Missense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr3:141164290G>C	uc003etw.2	+	8	4042	c.3060G>C	c.(3058-3060)CAG>CAC	p.Q1020H	ZBTB38_uc010hun.2_Missense_Mutation_p.Q1017H|ZBTB38_uc010huo.2_Missense_Mutation_p.Q1020H|ZBTB38_uc003ety.2_Missense_Mutation_p.Q1020H|ZBTB38_uc010hup.2_Missense_Mutation_p.Q1021H	NM_001080412	NP_001073881	Q8NAP3	ZBT38_HUMAN	zinc finger and BTB domain containing 38	1020	C2H2-type 6.				positive regulation of transcription from RNA polymerase II promoter	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(3)	3						AGCAGTTCCAGAGCCCTTCCA	0.557000													4	41					0	0	1	0	0
ATP1B3	483	broad.mit.edu	37	3	141626075	141626075	+	Missense_Mutation	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr3:141626075C>T	uc003eug.1	+	3	479	c.305C>T	c.(304-306)TCG>TTG	p.S102L	ATP1B3_uc011bne.1_RNA|ATP1B3_uc003euh.1_Missense_Mutation_p.S88L	NM_001679	NP_001670	P54709	AT1B3_HUMAN	Na+/K+ -ATPase beta 3 subunit	102	Extracellular (Potential).				ATP biosynthetic process|blood coagulation|leukocyte migration	melanosome|sodium:potassium-exchanging ATPase complex	protein binding|sodium:potassium-exchanging ATPase activity				0						GATCCAACTTCGTATGCAGGG	0.343000													15	80					0	0	1	0	0
PLS1	5357	broad.mit.edu	37	3	142388394	142388394	+	Missense_Mutation	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr3:142388394C>T	uc010huv.2	+	3	392	c.233C>T	c.(232-234)TCA>TTA	p.S78L	PLS1_uc003euz.2_Missense_Mutation_p.S78L|PLS1_uc003eva.2_Missense_Mutation_p.S78L	NM_001145319	NP_001138791	Q14651	PLSI_HUMAN	plastin 1	78	EF-hand 2.					cytoplasm	actin filament binding|calcium ion binding|structural constituent of cytoskeleton			ovary(1)	1						GAGTTTGTGTCAGTAAGTAAT	0.413000													42	152					0	0	1	0	0
SR140	23350	broad.mit.edu	37	3	142735174	142735174	+	Missense_Mutation	SNP	A	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr3:142735174A>G	uc003evh.1	+	5	496	c.397A>G	c.(397-399)AAA>GAA	p.K133E	SR140_uc003evi.1_5'UTR|SR140_uc011bnj.1_Missense_Mutation_p.K133E|SR140_uc003evj.1_RNA|SR140_uc003evk.1_Missense_Mutation_p.K133E	NM_001080415	NP_001073884	O15042	SR140_HUMAN	U2-associated SR140 protein	133					RNA processing	nucleus	nucleotide binding|RNA binding				0						TAATAAAGTGAAAACATTTGT	0.353000													22	104					0	0	1	0	0
CP	1356	broad.mit.edu	37	3	148927989	148927989	+	Missense_Mutation	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr3:148927989G>A	uc003ewy.3	-	3	825	c.572C>T	c.(571-573)TCA>TTA	p.S191L	CP_uc011bnr.1_RNA|CP_uc003ewx.3_5'Flank|CP_uc003ewz.2_Missense_Mutation_p.S191L|CP_uc010hvf.1_5'Flank	NM_000096	NP_000087	P00450	CERU_HUMAN	ceruloplasmin precursor	191	F5/8 type A 1.|Plastocyanin-like 1.				cellular iron ion homeostasis|copper ion transport|transmembrane transport	extracellular space	chaperone binding|ferroxidase activity			ovary(1)	1		Prostate(884;0.00217)|Hepatocellular(537;0.00826)|Myeloproliferative disorder(1037;0.0122)|all_neural(597;0.0189)|Melanoma(1037;0.152)	LUSC - Lung squamous cell carcinoma(72;0.0473)|Lung(72;0.0607)		Drotrecogin alfa(DB00055)	GATGAGTCCTGAGGCAATATC	0.423000													41	136					0	0	1	0	0
TSC22D2	9819	broad.mit.edu	37	3	150127342	150127342	+	Missense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr3:150127342G>C	uc003exv.2	+	1	555	c.205G>C	c.(205-207)GAA>CAA	p.E69Q	TSC22D2_uc003exw.2_RNA|TSC22D2_uc003exx.2_Missense_Mutation_p.E69Q	NM_014779	NP_055594	O75157	T22D2_HUMAN	TSC22 domain family, member 2	69							sequence-specific DNA binding transcription factor activity			ovary(1)	1			LUSC - Lung squamous cell carcinoma(72;0.0538)|Lung(72;0.066)			CAGCTCTTCCGAAGAGACGCT	0.637000													19	41					0	0	1	0	0
EIF2A	83939	broad.mit.edu	37	3	150293454	150293454	+	Nonsense_Mutation	SNP	C	T	T	rs77894044		TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr3:150293454C>T	uc003eya.2	+	11	1418	c.1402C>T	c.(1402-1404)CAG>TAG	p.Q468*	SERP1_uc003exz.2_Intron|EIF2A_uc003eyb.2_Nonsense_Mutation_p.Q341*|EIF2A_uc003eyc.2_Nonsense_Mutation_p.Q341*|EIF2A_uc011bnv.1_Nonsense_Mutation_p.Q443*|EIF2A_uc011bnw.1_Nonsense_Mutation_p.Q407*|EIF2A_uc003eyd.2_Nonsense_Mutation_p.Q243*|uc003eye.1_Intron	NM_032025	NP_114414	Q9BY44	EIF2A_HUMAN	eukaryotic translation initiation factor 2A	468					regulation of translation|ribosome assembly	eukaryotic translation initiation factor 2 complex	ribosome binding|translation initiation factor activity|tRNA binding				0		Melanoma(1037;0.0575)	LUSC - Lung squamous cell carcinoma(72;0.0538)|Lung(72;0.066)			GGAACCACCTCAGAATATGAA	0.338000													4	22					0	0	1	0	0
MED12L	116931	broad.mit.edu	37	3	151067972	151067972	+	Silent	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr3:151067972G>A	uc003eyp.2	+	15	2309	c.2271G>A	c.(2269-2271)AAG>AAA	p.K757K	MED12L_uc011bnz.1_Silent_p.K617K|P2RY12_uc011boa.1_Intron|P2RY12_uc003eyx.1_Intron	NM_053002	NP_443728	Q86YW9	MD12L_HUMAN	mediator of RNA polymerase II transcription,	757					regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	mediator complex				ovary(4)|large_intestine(1)|central_nervous_system(1)|skin(1)	7			LUSC - Lung squamous cell carcinoma(72;0.0394)|Lung(72;0.0517)			TTCTAAATAAGAAGAGCACCA	0.443000													48	138					0	0	1	0	0
GMPS	8833	broad.mit.edu	37	3	155632226	155632226	+	Missense_Mutation	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr3:155632226C>T	uc003faq.2	+	8	1240	c.905C>T	c.(904-906)TCT>TTT	p.S302F	GMPS_uc011bom.1_Missense_Mutation_p.S203F	NM_003875	NP_003866	P49915	GUAA_HUMAN	guanine monophosphate synthetase	302					glutamine metabolic process|purine base biosynthetic process	cytosol	ATP binding|GMP synthase (glutamine-hydrolyzing) activity|GMP synthase activity			ovary(2)|lung(1)	3			Lung(72;0.11)|LUSC - Lung squamous cell carcinoma(72;0.114)		L-Glutamic Acid(DB00142)|L-Glutamine(DB00130)	GCTGCTCATTCTTTCTACAAT	0.343000			T	MLL	AML								21	67					0	0	1	0	0
TIPARP	25976	broad.mit.edu	37	3	156395966	156395966	+	Silent	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr3:156395966G>A	uc003fav.2	+	2	728	c.480G>A	c.(478-480)CAG>CAA	p.Q160Q	LOC100287227_uc011boq.1_5'Flank|TIPARP_uc003faw.2_Silent_p.Q160Q	NM_015508	NP_056323	Q7Z3E1	PARPT_HUMAN	TCDD-inducible poly(ADP-ribose) polymerase	160							NAD+ ADP-ribosyltransferase activity|nucleic acid binding|protein binding|zinc ion binding			ovary(1)|breast(1)	2			LUSC - Lung squamous cell carcinoma(72;0.0461)|Lung(72;0.0465)			CTCACTTCCAGACTGATCTTT	0.463000													37	141					0	0	1	0	0
CCNL1	57018	broad.mit.edu	37	3	156870834	156870834	+	Silent	SNP	A	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr3:156870834A>G	uc003fbf.2	-	4	1199	c.600T>C	c.(598-600)CAT>CAC	p.H200H	CCNL1_uc003fbd.1_Silent_p.H200H|CCNL1_uc003fbe.2_5'UTR|CCNL1_uc003fbg.2_RNA|CCNL1_uc011bor.1_RNA|CCNL1_uc003fbi.1_Silent_p.H45H	NM_020307	NP_064703	Q9UK58	CCNL1_HUMAN	cyclin L1	200					regulation of cyclin-dependent protein kinase activity|regulation of transcription, DNA-dependent|RNA processing|transcription, DNA-dependent	nuclear speck	protein kinase binding			lung(3)|breast(1)|skin(1)	5			LUSC - Lung squamous cell carcinoma(72;0.0295)|Lung(72;0.0308)			CCTTATGAGGATGCTTGACAT	0.348000													21	109					0	0	1	0	0
CCNL1	57018	broad.mit.edu	37	3	156877263	156877263	+	Silent	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr3:156877263C>G	uc003fbf.2	-	2	908	c.309G>C	c.(307-309)GCG>GCC	p.A103A	CCNL1_uc003fbd.1_Silent_p.A103A|CCNL1_uc003fbg.2_RNA|CCNL1_uc011bor.1_RNA|CCNL1_uc003fbi.1_5'UTR	NM_020307	NP_064703	Q9UK58	CCNL1_HUMAN	cyclin L1	103	Cyclin-like 1.				regulation of cyclin-dependent protein kinase activity|regulation of transcription, DNA-dependent|RNA processing|transcription, DNA-dependent	nuclear speck	protein kinase binding	p.A103V(1)		lung(3)|breast(1)|skin(1)	5			LUSC - Lung squamous cell carcinoma(72;0.0295)|Lung(72;0.0308)			CCGTTGCCATCGCCACCTGCA	0.582000													6	24					0	0	1	0	0
VEPH1	79674	broad.mit.edu	37	3	157081331	157081331	+	Missense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr3:157081331C>G	uc003fbj.1	-	9	1874	c.1557G>C	c.(1555-1557)GAG>GAC	p.E519D	VEPH1_uc003fbk.1_Missense_Mutation_p.E519D|VEPH1_uc010hvu.1_Missense_Mutation_p.E519D	NM_024621	NP_078897	Q14D04	MELT_HUMAN	ventricular zone expressed PH domain homolog 1	519						plasma membrane				breast(3)|ovary(1)|lung(1)	5			Lung(72;0.0272)|LUSC - Lung squamous cell carcinoma(72;0.0461)			CTGACAAATTCTCTGAGTCTA	0.398000													57	166					0	0	1	0	0
LRRC31	79782	broad.mit.edu	37	3	169579586	169579586	+	Missense_Mutation	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr3:169579586G>A	uc003fgc.1	-	2	268	c.191C>T	c.(190-192)TCA>TTA	p.S64L	LRRC31_uc010hwp.1_Missense_Mutation_p.S64L	NM_024727	NP_079003	Q6UY01	LRC31_HUMAN	leucine rich repeat containing 31	64										ovary(2)|skin(1)	3	all_cancers(22;2.76e-22)|all_epithelial(15;4.73e-27)|all_lung(20;9.24e-17)|Lung NSC(18;3.85e-16)|Ovarian(172;0.000223)|Breast(254;0.197)		Lung(28;2.71e-13)|STAD - Stomach adenocarcinoma(35;0.00943)			TTCCATTTCTGAACTGAGAGG	0.378000													40	158					0	0	1	0	0
LRRC31	79782	broad.mit.edu	37	3	169587429	169587429	+	Nonsense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr3:169587429G>C	uc003fgc.1	-	1	244	c.167C>G	c.(166-168)TCA>TGA	p.S56*	LRRC31_uc010hwp.1_Nonsense_Mutation_p.S56*	NM_024727	NP_079003	Q6UY01	LRC31_HUMAN	leucine rich repeat containing 31	56										ovary(2)|skin(1)	3	all_cancers(22;2.76e-22)|all_epithelial(15;4.73e-27)|all_lung(20;9.24e-17)|Lung NSC(18;3.85e-16)|Ovarian(172;0.000223)|Breast(254;0.197)		Lung(28;2.71e-13)|STAD - Stomach adenocarcinoma(35;0.00943)			ACCAGTCTCTGAGGTGGCTGT	0.368000													19	67					0	0	1	0	0
SKIL	6498	broad.mit.edu	37	3	170109008	170109008	+	Nonsense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr3:170109008C>G	uc003fgu.2	+	6	2568	c.1856C>G	c.(1855-1857)TCA>TGA	p.S619*	SKIL_uc011bps.1_Nonsense_Mutation_p.S599*|SKIL_uc003fgv.2_Nonsense_Mutation_p.S573*|SKIL_uc003fgw.2_Nonsense_Mutation_p.S619*	NM_005414	NP_005405	P12757	SKIL_HUMAN	SKI-like isoform 1	619	Potential.				cell cycle arrest|negative regulation of cell differentiation|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transforming growth factor beta receptor signaling pathway|positive regulation of axonogenesis|protein heterotrimerization|protein homotrimerization|regulation of apoptosis|regulation of apoptosis|response to antibiotic|response to growth factor stimulus|skeletal muscle tissue development	cytoplasm|PML body	chromatin binding|nucleotide binding|protein complex binding|protein domain specific binding|SMAD binding|transcription corepressor activity|transcription repressor activity			ovary(2)|skin(1)	3	all_cancers(22;7.13e-23)|all_epithelial(15;9.95e-28)|all_lung(20;1.23e-16)|Lung NSC(18;5.15e-16)|Ovarian(172;0.000337)|Breast(254;0.137)		Lung(28;2.71e-13)|STAD - Stomach adenocarcinoma(35;0.197)			ACCTGTGACTCAAATTTAGAA	0.343000													3	27					0	0	1	0	0
PIK3CA	5290	broad.mit.edu	37	3	178936082	178936082	+	Missense_Mutation	SNP	G	A	A	rs121913273		TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr3:178936082G>A	uc003fjk.2	+	10	1781	c.1624G>A	c.(1624-1626)GAA>AAA	p.E542K		NM_006218	NP_006209	P42336	PK3CA_HUMAN	phosphoinositide-3-kinase, catalytic, alpha	542	PI3K helical.		E -> V (in cancer).|E -> K (in KERSEB; shows an increase in lipid kinase activity; oncogenic in vivo; occurs in the interface between the PI3K helical domain and the nSH2 (N-terminal SH2) region of the p85 regulatory subunit and may reduce the inhibitory effect of p85; requires interaction with RAS to induce cellular transformation).|E -> Q (in cancer).		epidermal growth factor receptor signaling pathway|fibroblast growth factor receptor signaling pathway|insulin receptor signaling pathway|leukocyte migration|nerve growth factor receptor signaling pathway|phosphatidylinositol-mediated signaling|platelet activation|T cell costimulation|T cell receptor signaling pathway		1-phosphatidylinositol-3-kinase activity|ATP binding|phosphatidylinositol-4,5-bisphosphate 3-kinase activity	p.E542K(481)|p.E542V(8)|p.E542Q(6)|p.E542G(1)		breast(1564)|large_intestine(776)|endometrium(246)|urinary_tract(195)|ovary(141)|skin(112)|stomach(98)|thyroid(77)|central_nervous_system(69)|lung(65)|upper_aerodigestive_tract(58)|haematopoietic_and_lymphoid_tissue(27)|cervix(25)|biliary_tract(22)|liver(20)|oesophagus(17)|pancreas(11)|penis(8)|pituitary(8)|autonomic_ganglia(4)|prostate(3)|kidney(2)|meninges(1)|eye(1)|NS(1)|soft_tissue(1)|bone(1)	3553	all_cancers(143;1.19e-17)|Ovarian(172;0.00769)|Breast(254;0.155)		OV - Ovarian serous cystadenocarcinoma(80;9.59e-28)|GBM - Glioblastoma multiforme(14;0.003)|BRCA - Breast invasive adenocarcinoma(182;0.0282)			TCCTCTCTCTGAAATCACTGA	0.333000	E542K(SW948_LARGE_INTESTINE)|E542K(T84_LARGE_INTESTINE)|E542K(CAL51_BREAST)|E542K(JHUEM1_ENDOMETRIUM)|E542K(NCIH1341_LUNG)|E542K(VMCUB1_URINARY_TRACT)|E542K(BT483_BREAST)|E542K(HGC27_STOMACH)|E542K(IM95_STOMACH)	57	Mis		colorectal|gastric|gliobastoma|breast					HNSCC(19;0.045)|TSP Lung(28;0.18)			14	52					0	0	1	0	0
ATP11B	23200	broad.mit.edu	37	3	182583386	182583386	+	Missense_Mutation	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr3:182583386G>A	uc003flb.2	+	13	1600	c.1343G>A	c.(1342-1344)GGA>GAA	p.G448E	ATP11B_uc003flc.2_Missense_Mutation_p.G32E	NM_014616	NP_055431	Q9Y2G3	AT11B_HUMAN	ATPase, class VI, type 11B	448	Cytoplasmic (Potential).				aminophospholipid transport|ATP biosynthetic process	integral to membrane|nuclear inner membrane|plasma membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|magnesium ion binding|phospholipid-translocating ATPase activity			ovary(2)|pancreas(1)	3	all_cancers(143;9.04e-15)|Ovarian(172;0.0355)		all cancers(12;1.2e-42)|Epithelial(37;2.77e-36)|LUSC - Lung squamous cell carcinoma(7;7.58e-24)|Lung(8;4.66e-22)|OV - Ovarian serous cystadenocarcinoma(80;2.35e-20)			TCTTCAGAAGGAAACTTATCT	0.373000													31	136					0	0	1	0	0
LAMP3	27074	broad.mit.edu	37	3	182841895	182841895	+	Missense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr3:182841895G>C	uc003flh.3	-	6	1449	c.1225C>G	c.(1225-1227)CAA>GAA	p.Q409E		NM_014398	NP_055213	Q9UQV4	LAMP3_HUMAN	lysosomal-associated membrane protein 3	409	Cytoplasmic (Potential).				cell proliferation	integral to membrane|lysosomal membrane				ovary(2)|central_nervous_system(1)	3	all_cancers(143;9.14e-14)|Ovarian(172;0.0355)		all cancers(12;2.91e-44)|Epithelial(37;5.52e-38)|LUSC - Lung squamous cell carcinoma(7;7.12e-25)|Lung(8;6.39e-23)|OV - Ovarian serous cystadenocarcinoma(80;4.16e-21)			CCAGATGATTGACACCTTAGG	0.458000													9	174					0	0	1	0	0
ABCC5	10057	broad.mit.edu	37	3	183669665	183669665	+	Nonsense_Mutation	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr3:183669665G>A	uc003fmg.2	-	19	2959	c.2794C>T	c.(2794-2796)CGA>TGA	p.R932*	ABCC5_uc011bqt.1_Nonsense_Mutation_p.R460*|ABCC5_uc010hxl.2_Nonsense_Mutation_p.R932*	NM_005688	NP_005679	O15440	MRP5_HUMAN	ATP-binding cassette, sub-family C, member 5	932	Helical; (Potential).|ABC transmembrane type-1 2.					integral to plasma membrane|membrane fraction	ATP binding|ATPase activity, coupled to transmembrane movement of substances|organic anion transmembrane transporter activity			ovary(2)|large_intestine(1)|central_nervous_system(1)	4	all_cancers(143;1.85e-10)|Ovarian(172;0.0303)		Epithelial(37;1.74e-35)|OV - Ovarian serous cystadenocarcinoma(80;6.48e-22)			ACAACTCCTCGAATGGCTTTC	0.537000													16	79					0	0	1	0	0
HTR3E	285242	broad.mit.edu	37	3	183818403	183818403	+	Silent	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr3:183818403C>G	uc010hxq.2	+	2	664	c.198C>G	c.(196-198)GTC>GTG	p.V66V	HTR3E_uc003fml.3_Silent_p.V66V|HTR3E_uc003fmm.2_Silent_p.V81V|HTR3E_uc010hxr.2_Silent_p.V81V|HTR3E_uc003fmn.2_Silent_p.V81V	NM_182589	NP_872395	A5X5Y0	5HT3E_HUMAN	5-hydroxytryptamine receptor 3 subunit E	66	Extracellular (Potential).					integral to membrane|plasma membrane|postsynaptic membrane	extracellular ligand-gated ion channel activity|receptor activity			ovary(1)|central_nervous_system(1)|skin(1)	3	all_cancers(143;1.46e-10)|Ovarian(172;0.0303)		Epithelial(37;7.06e-36)|OV - Ovarian serous cystadenocarcinoma(80;3.11e-22)			CCACCCAAGTCAACATCTCCT	0.552000													6	205					0	0	1	0	0
EIF2B5	8893	broad.mit.edu	37	3	183858264	183858264	+	Missense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr3:183858264C>G	uc003fmp.2	+	7	1266	c.902C>G	c.(901-903)TCC>TGC	p.S301C	EIF2B5_uc003fmq.2_Missense_Mutation_p.S22C|EIF2B5_uc003fmr.2_5'Flank	NM_003907	NP_003898	Q13144	EI2BE_HUMAN	eukaryotic translation initiation factor 2B,	301					astrocyte development|myelination|negative regulation of translational initiation in response to stress|oligodendrocyte development|ovarian follicle development|positive regulation of translational initiation|response to glucose stimulus|response to heat|response to peptide hormone stimulus|RNA metabolic process	cytosol|eukaryotic translation initiation factor 2B complex|nucleus	guanyl-nucleotide exchange factor activity|transferase activity|translation initiation factor activity|translation initiation factor binding			ovary(5)	5	all_cancers(143;7.59e-11)|Ovarian(172;0.0303)		Epithelial(37;7.06e-36)|OV - Ovarian serous cystadenocarcinoma(80;3.11e-22)			GCCCGTGTCTCCAACCTACAC	0.532000													67	255					0	0	1	0	0
ABCF3	55324	broad.mit.edu	37	3	183910898	183910898	+	Missense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr3:183910898G>C	uc003fmz.2	+	19	1892	c.1759G>C	c.(1759-1761)GAG>CAG	p.E587Q	ABCF3_uc003fna.2_Missense_Mutation_p.E581Q|ABCF3_uc003fnb.2_Missense_Mutation_p.E268Q	NM_018358	NP_060828	Q9NUQ8	ABCF3_HUMAN	ATP-binding cassette, sub-family F (GCN20),	587	ABC transporter 2.						ATP binding|ATPase activity			ovary(3)|lung(1)	4	all_cancers(143;1.12e-10)|Ovarian(172;0.0339)		Epithelial(37;2.35e-34)|OV - Ovarian serous cystadenocarcinoma(80;2.72e-22)			AGGGCGGCCTGAGGAGGAGTA	0.632000													15	73					0	0	1	0	0
EIF4G1	1981	broad.mit.edu	37	3	184040704	184040704	+	Missense_Mutation	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr3:184040704G>A	uc003fnp.2	+	13	2089	c.1891G>A	c.(1891-1893)GAG>AAG	p.E631K	EIF4G1_uc003fno.1_Missense_Mutation_p.E572K|EIF4G1_uc010hxw.1_Missense_Mutation_p.E467K|EIF4G1_uc003fnt.2_Missense_Mutation_p.E342K|EIF4G1_uc003fnq.2_Missense_Mutation_p.E544K|EIF4G1_uc003fnr.2_Missense_Mutation_p.E467K|EIF4G1_uc010hxx.2_Missense_Mutation_p.E638K|EIF4G1_uc003fns.2_Missense_Mutation_p.E591K|EIF4G1_uc010hxy.2_Missense_Mutation_p.E638K|EIF4G1_uc003fnv.3_Missense_Mutation_p.E631K|EIF4G1_uc003fnu.3_Missense_Mutation_p.E631K|EIF4G1_uc003fnw.2_Missense_Mutation_p.E638K|EIF4G1_uc003fnx.2_Missense_Mutation_p.E435K|EIF4G1_uc003fny.3_Missense_Mutation_p.E435K|SNORD66_uc003fnz.2_5'Flank	NM_198241	NP_937884	Q04637	IF4G1_HUMAN	eukaryotic translation initiation factor 4	631	MIF4G.				insulin receptor signaling pathway|interspecies interaction between organisms|nuclear-transcribed mRNA poly(A) tail shortening|regulation of translational initiation	cytosol|eukaryotic translation initiation factor 4F complex	protein binding|translation initiation factor activity			lung(2)|ovary(2)|upper_aerodigestive_tract(1)|large_intestine(1)|central_nervous_system(1)	7	all_cancers(143;1.06e-10)|Ovarian(172;0.0339)		Epithelial(37;1.53e-33)|OV - Ovarian serous cystadenocarcinoma(80;2.72e-22)			GCAGAAGCCAGAGGGATTGCC	0.502000													55	207					0	0	1	0	0
EIF4G1	1981	broad.mit.edu	37	3	184040742	184040742	+	Missense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr3:184040742G>C	uc003fnp.2	+	13	2127	c.1929G>C	c.(1927-1929)AAG>AAC	p.K643N	EIF4G1_uc003fno.1_Missense_Mutation_p.K584N|EIF4G1_uc010hxw.1_Missense_Mutation_p.K479N|EIF4G1_uc003fnt.2_Missense_Mutation_p.K354N|EIF4G1_uc003fnq.2_Missense_Mutation_p.K556N|EIF4G1_uc003fnr.2_Missense_Mutation_p.K479N|EIF4G1_uc010hxx.2_Missense_Mutation_p.K650N|EIF4G1_uc003fns.2_Missense_Mutation_p.K603N|EIF4G1_uc010hxy.2_Missense_Mutation_p.K650N|EIF4G1_uc003fnv.3_Missense_Mutation_p.K643N|EIF4G1_uc003fnu.3_Missense_Mutation_p.K643N|EIF4G1_uc003fnw.2_Missense_Mutation_p.K650N|EIF4G1_uc003fnx.2_Missense_Mutation_p.K447N|EIF4G1_uc003fny.3_Missense_Mutation_p.K447N|SNORD66_uc003fnz.2_5'Flank	NM_198241	NP_937884	Q04637	IF4G1_HUMAN	eukaryotic translation initiation factor 4	643	MIF4G.				insulin receptor signaling pathway|interspecies interaction between organisms|nuclear-transcribed mRNA poly(A) tail shortening|regulation of translational initiation	cytosol|eukaryotic translation initiation factor 4F complex	protein binding|translation initiation factor activity			lung(2)|ovary(2)|upper_aerodigestive_tract(1)|large_intestine(1)|central_nervous_system(1)	7	all_cancers(143;1.06e-10)|Ovarian(172;0.0339)		Epithelial(37;1.53e-33)|OV - Ovarian serous cystadenocarcinoma(80;2.72e-22)			TGCTGGACAAGGTTAGTGGCT	0.517000													42	196					0	0	1	0	0
VPS8	23355	broad.mit.edu	37	3	184566917	184566917	+	Silent	SNP	C	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr3:184566917C>A	uc003fpb.1	+	8	765	c.594C>A	c.(592-594)GGC>GGA	p.G198G	VPS8_uc010hyd.1_Silent_p.G198G	NM_015303	NP_056118	Q8N3P4	VPS8_HUMAN	vacuolar protein sorting 8 homolog isoform b	200	WD.						zinc ion binding			ovary(1)	1	all_cancers(143;2.51e-11)|Ovarian(172;0.0339)|Breast(254;0.247)		Epithelial(37;1.02e-33)|OV - Ovarian serous cystadenocarcinoma(80;4.81e-22)			GTCAGTATGGCGCTATCTCTG	0.408000													19	55					4.96729e-08	5.08778e-08	1	1	0
SENP2	59343	broad.mit.edu	37	3	185335364	185335364	+	Missense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr3:185335364C>G	uc003fpn.2	+	12	1378	c.1207C>G	c.(1207-1209)CAG>GAG	p.Q403E	SENP2_uc011brv.1_Missense_Mutation_p.Q393E|SENP2_uc011brw.1_Missense_Mutation_p.Q216E	NM_021627	NP_067640	Q9HC62	SENP2_HUMAN	SUMO1/sentrin/SMT3 specific protease 2	403	Protease.			Q -> H (in Ref. 4; BAB55222).	mRNA transport|protein desumoylation|protein transport|proteolysis|regulation of Wnt receptor signaling pathway|transmembrane transport|Wnt receptor signaling pathway	cytoplasm|nuclear membrane|nuclear pore	protein binding|SUMO-specific protease activity				0	all_cancers(143;1.28e-10)|Ovarian(172;0.0386)		OV - Ovarian serous cystadenocarcinoma(80;1.31e-21)			AGGAGATATTCAGACATTAAA	0.368000													3	104					0	0	1	0	0
ETV5	2119	broad.mit.edu	37	3	185798884	185798884	+	Missense_Mutation	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr3:185798884C>T	uc003fpz.2	-	6	560	c.313G>A	c.(313-315)GAG>AAG	p.E105K	ETV5_uc003fpy.2_Missense_Mutation_p.E147K	NM_004454	NP_004445	P41161	ETV5_HUMAN	ets variant gene 5 (ets-related molecule)	105					cellular response to oxidative stress	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding			ovary(2)|skin(2)|breast(1)	5	all_cancers(143;4.06e-12)|Ovarian(172;0.0386)|Breast(254;0.247)		OV - Ovarian serous cystadenocarcinoma(80;1.62e-24)			AGAGCCTGCTCATGGCTACAA	0.532000			T	TMPRSS2|SCL45A3	Prostate 								68	232					0	0	1	0	0
CLDN16	10686	broad.mit.edu	37	3	190120149	190120149	+	Silent	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr3:190120149C>G	uc003fsi.2	+	2	416	c.348C>G	c.(346-348)CTC>CTG	p.L116L	CLDN16_uc010hze.2_Intron	NM_006580	NP_006571	Q9Y5I7	CLD16_HUMAN	claudin 16	116	Extracellular (Potential).				calcium-independent cell-cell adhesion|cellular metal ion homeostasis|excretion	integral to membrane|tight junction	identical protein binding|magnesium ion transmembrane transporter activity|structural molecule activity			ovary(1)	1	all_cancers(143;3.61e-10)|Ovarian(172;0.0991)		Lung(62;2.23e-05)|LUSC - Lung squamous cell carcinoma(58;3.15e-05)	GBM - Glioblastoma multiforme(93;0.018)		GCCGAGGCCTCTGGTGGGAAT	0.473000													29	97					0	0	1	0	0
OPA1	4976	broad.mit.edu	37	3	193364936	193364936	+	Missense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr3:193364936G>C	uc003ftm.2	+	17	1906	c.1672G>C	c.(1672-1674)GAG>CAG	p.E558Q	OPA1_uc003ftg.2_Missense_Mutation_p.E613Q|OPA1_uc003fth.2_Missense_Mutation_p.E577Q|OPA1_uc003fti.2_Missense_Mutation_p.E595Q|OPA1_uc003ftj.2_Missense_Mutation_p.E576Q|OPA1_uc003ftk.2_Missense_Mutation_p.E559Q|OPA1_uc003ftl.2_Missense_Mutation_p.E540Q|OPA1_uc003ftn.2_Missense_Mutation_p.E522Q	NM_015560	NP_056375	O60313	OPA1_HUMAN	optic atrophy 1 isoform 1	558	Mitochondrial intermembrane (By similarity).				apoptosis|axon transport of mitochondrion|inner mitochondrial membrane organization|mitochondrial fission|mitochondrial fusion|positive regulation of anti-apoptosis|response to stimulus|visual perception	dendrite|integral to membrane|mitochondrial crista|mitochondrial intermembrane space|mitochondrial outer membrane	GTP binding|GTPase activity|magnesium ion binding|protein binding				0	all_cancers(143;9.56e-09)|Ovarian(172;0.0386)		OV - Ovarian serous cystadenocarcinoma(49;9.19e-18)|LUSC - Lung squamous cell carcinoma(58;3.55e-06)|Lung(62;4.19e-06)	GBM - Glioblastoma multiforme(46;0.000162)		AATGGTACGAGAGTCTGTTGA	0.358000													3	35					0	0	1	0	0
ACAP2	23527	broad.mit.edu	37	3	195022884	195022884	+	Missense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr3:195022884G>C	uc003fun.3	-	14	1377	c.1136C>G	c.(1135-1137)TCT>TGT	p.S379C		NM_012287	NP_036419	Q15057	ACAP2_HUMAN	centaurin, beta 2	379					regulation of ARF GTPase activity		ARF GTPase activator activity|zinc ion binding			large_intestine(1)|ovary(1)	2						TGTGGATGGAGATGATTTCTT	0.368000													3	225					0	0	1	0	0
SDHAP2	727956	broad.mit.edu	37	3	195400839	195400839	+	Missense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr3:195400839C>G	uc003fuw.2	+	9	1329	c.135C>G	c.(133-135)ATC>ATG	p.I45M	SDHAP2_uc011btb.1_Missense_Mutation_p.R193G|SDHAP2_uc011btc.1_RNA|SDHAP2_uc003fuv.2_RNA					SubName: Full=cDNA FLJ16373 fis, clone THYMU3000269, highly similar to Succinate dehydrogenase (ubiquinone) flavoprotein subunit, mitochondrial (EC 1.3.5.1);												0						CCCTGAGCATCGCAGAGTCGT	0.507000													12	14					0	0	1	0	0
SDHAP1	255812	broad.mit.edu	37	3	195692388	195692388	+	Missense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr3:195692388G>C	uc003fvy.2	-	3	269	c.155C>G	c.(154-156)TCC>TGC	p.S52C	SDHAP1_uc003fvx.3_RNA					Homo sapiens full length insert cDNA clone ZC24D06.												0						GATGGGCTTGGAGTGATCGTA	0.493000													5	30					0	0	1	0	0
PCYT1A	5130	broad.mit.edu	37	3	195969477	195969477	+	Missense_Mutation	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr3:195969477G>A	uc003fwg.2	-	7	694	c.521C>T	c.(520-522)TCA>TTA	p.S174L	PCYT1A_uc003fwh.2_Missense_Mutation_p.S174L	NM_005017	NP_005008	P49585	PCY1A_HUMAN	choline phosphate cytidylyltransferase 1 alpha	174	Catalytic (Potential).					cytosol|soluble fraction	choline-phosphate cytidylyltransferase activity				0	all_cancers(143;1.19e-08)|Ovarian(172;0.0634)|Breast(254;0.206)		Epithelial(36;1.28e-24)|all cancers(36;1.01e-22)|OV - Ovarian serous cystadenocarcinoma(49;3.88e-19)|LUSC - Lung squamous cell carcinoma(58;1.51e-06)|Lung(62;1.95e-06)	GBM - Glioblastoma multiforme(46;0.00259)	Choline(DB00122)	GCCAGCAGATGAATAAGGAAT	0.428000													18	84					0	0	1	0	0
ZNF876P	642280	broad.mit.edu	37	4	247422	247422	+	RNA	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr4:247422G>A	uc010iba.2	+	2		c.256G>A				NR_027481				Homo sapiens cDNA clone IMAGE:4828836.												0						AACTTATACTGAGAAGATATG	0.358000													5	25					0	0	1	0	0
PDE6B	5158	broad.mit.edu	37	4	647895	647895	+	Silent	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr4:647895G>C	uc003gap.2	+	5	932	c.879G>C	c.(877-879)CTG>CTC	p.L293L	PDE6B_uc003gao.3_Silent_p.L293L|PDE6B_uc011buy.1_Silent_p.L14L|PDE6B_uc010ibg.2_Silent_p.L14L|uc003gaq.1_RNA	NM_000283	NP_000274	P35913	PDE6B_HUMAN	phosphodiesterase 6B isoform 1	293	GAF 2.				cytosolic calcium ion homeostasis|GMP metabolic process|phototransduction, visible light|platelet activation|visual perception	cytosol|membrane	3',5'-cyclic-GMP phosphodiesterase activity|metal ion binding				0						GGTCTGTGCTGATGGGAGAGT	0.667000													13	66					0	0	1	0	0
MFSD10	10227	broad.mit.edu	37	4	2935543	2935543	+	Silent	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr4:2935543G>C	uc003gfw.2	-	1	422	c.108C>G	c.(106-108)CTC>CTG	p.L36L	MFSD10_uc003gfv.2_5'Flank|MFSD10_uc003gfx.2_5'UTR|MFSD10_uc003gfz.2_Silent_p.L36L|MFSD10_uc003gfy.2_RNA|MFSD10_uc003gga.2_Silent_p.L36L|MFSD10_uc003ggb.1_Silent_p.L36L|MFSD10_uc003ggc.2_Silent_p.L36L|C4orf10_uc003ggd.1_5'Flank|C4orf10_uc003gge.1_5'Flank|C4orf10_uc003ggg.1_5'Flank|C4orf10_uc003ggh.2_5'Flank	NM_001120	NP_001111	Q14728	MFS10_HUMAN	major facilitator superfamily domain containing	36	Helical; (Potential).				apoptosis	integral to membrane	tetracycline transporter activity				0				UCEC - Uterine corpus endometrioid carcinoma (64;0.163)		TGAAGGCCAGGAGGTCCAGCA	0.731000													3	7					0	0	1	0	0
HTT	3064	broad.mit.edu	37	4	3109064	3109064	+	Missense_Mutation	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr4:3109064G>A	uc011bvq.1	+	7	812	c.667G>A	c.(667-669)GAA>AAA	p.E223K		NM_002111	NP_002102	P42858	HD_HUMAN	huntingtin	221	HEAT 1.				establishment of mitotic spindle orientation|Golgi organization|retrograde vesicle-mediated transport, Golgi to ER|vesicle transport along microtubule	autophagic vacuole|axon|cytoplasmic vesicle membrane|cytosol|dendrite|endoplasmic reticulum|Golgi apparatus|late endosome|membrane fraction|nucleus|protein complex	beta-tubulin binding|dynactin binding|dynein intermediate chain binding|p53 binding|transcription factor binding			skin(2)|ovary(1)|lung(1)	4		all_epithelial(65;0.18)		UCEC - Uterine corpus endometrioid carcinoma (64;0.187)		CAAGAGACCCGAAGAATCAGT	0.463000													29	72					0	0	1	0	0
HTT	3064	broad.mit.edu	37	4	3182304	3182304	+	Missense_Mutation	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr4:3182304G>A	uc011bvq.1	+	37	4826	c.4681G>A	c.(4681-4683)GAT>AAT	p.D1561N		NM_002111	NP_002102	P42858	HD_HUMAN	huntingtin	1559					establishment of mitotic spindle orientation|Golgi organization|retrograde vesicle-mediated transport, Golgi to ER|vesicle transport along microtubule	autophagic vacuole|axon|cytoplasmic vesicle membrane|cytosol|dendrite|endoplasmic reticulum|Golgi apparatus|late endosome|membrane fraction|nucleus|protein complex	beta-tubulin binding|dynactin binding|dynein intermediate chain binding|p53 binding|transcription factor binding			skin(2)|ovary(1)|lung(1)	4		all_epithelial(65;0.18)		UCEC - Uterine corpus endometrioid carcinoma (64;0.187)		AAATAAAGCTGATGCAGGAAA	0.453000													28	93					0	0	1	0	0
LOC348926	348926	broad.mit.edu	37	4	3949518	3949518	+	RNA	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr4:3949518C>T	uc011bvu.1	-	5		c.817G>A			LOC348926_uc003ghn.2_RNA	NR_024253				Homo sapiens hypothetical protein LOC348926, mRNA (cDNA clone IMAGE:4546485), partial cds.												0						GACAGACCGTCGCGACGTCCC	0.602000													9	54					0	0	1	0	0
STK32B	55351	broad.mit.edu	37	4	5458578	5458578	+	Silent	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr4:5458578C>T	uc003gih.1	+	8	775	c.711C>T	c.(709-711)CTC>CTT	p.L237L	STK32B_uc010ida.1_Silent_p.L190L	NM_018401	NP_060871	Q9NY57	ST32B_HUMAN	serine/threonine kinase 32B	237	Protein kinase.						ATP binding|metal ion binding|protein serine/threonine kinase activity			breast(2)|large_intestine(1)|central_nervous_system(1)|skin(1)	5						ATGAAATCCTCAACATGTTCA	0.572000													13	34					0	0	1	0	0
CRMP1	1400	broad.mit.edu	37	4	5858007	5858007	+	Missense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr4:5858007G>C	uc003gip.2	-	5	442	c.341C>G	c.(340-342)TCC>TGC	p.S114C	CRMP1_uc003gin.1_Missense_Mutation_p.S26C|CRMP1_uc003giq.2_Missense_Mutation_p.S114C|CRMP1_uc003gir.2_Missense_Mutation_p.S109C|CRMP1_uc003gis.2_Missense_Mutation_p.S228C	NM_001313	NP_001304	Q14194	DPYL1_HUMAN	collapsin response mediator protein 1 isoform 2	114					axon guidance|pyrimidine base catabolic process	cytosol|microtubule organizing center|spindle	dihydropyrimidinase activity|protein binding			ovary(2)	2				Colorectal(103;0.0721)		CAGTAGGCTGGACCCAGGTTC	0.468000													14	52					0	0	1	0	0
CRMP1	1400	broad.mit.edu	37	4	5862760	5862760	+	Silent	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr4:5862760C>G	uc003gip.2	-	4	407	c.306G>C	c.(304-306)ACG>ACC	p.T102T	CRMP1_uc003gin.1_Intron|CRMP1_uc003giq.2_Silent_p.T102T|CRMP1_uc003gir.2_Silent_p.T97T|CRMP1_uc003gis.2_Silent_p.T216T	NM_001313	NP_001304	Q14194	DPYL1_HUMAN	collapsin response mediator protein 1 isoform 2	102					axon guidance|pyrimidine base catabolic process	cytosol|microtubule organizing center|spindle	dihydropyrimidinase activity|protein binding			ovary(2)	2				Colorectal(103;0.0721)		CACTGATCATCGTGGTCCCGC	0.577000													17	68					0	0	1	0	0
MAN2B2	23324	broad.mit.edu	37	4	6622955	6622955	+	Silent	SNP	C	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr4:6622955C>A	uc003gjf.1	+	19	3009	c.2973C>A	c.(2971-2973)ATC>ATA	p.I991I	MAN2B2_uc003gje.1_3'UTR|MAN2B2_uc011bwf.1_Silent_p.I940I	NM_015274	NP_056089	Q9Y2E5	MA2B2_HUMAN	mannosidase, alpha, class 2B, member 2	991					mannose metabolic process	extracellular region	alpha-mannosidase activity|carbohydrate binding|zinc ion binding			ovary(2)	2						GAGGCCCCATCATCACCGTCC	0.617000													5	93					0.0215528	0.021668	1	1	0
CPZ	8532	broad.mit.edu	37	4	8609103	8609103	+	Missense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr4:8609103C>G	uc003glm.2	+	7	1304	c.1178C>G	c.(1177-1179)TCC>TGC	p.S393C	CPZ_uc003gll.2_RNA|CPZ_uc003gln.2_Missense_Mutation_p.S256C|CPZ_uc003glo.2_Missense_Mutation_p.S382C|CPZ_uc003glp.2_RNA	NM_001014447	NP_001014447	Q66K79	CBPZ_HUMAN	carboxypeptidase Z isoform 1	393					proteolysis|Wnt receptor signaling pathway	proteinaceous extracellular matrix	metallocarboxypeptidase activity|zinc ion binding			ovary(2)|pancreas(1)	3						TTCGACTTCTCCAAGCACCCC	0.597000											OREG0016100	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	14	45					0	0	1	0	0
BOD1L	259282	broad.mit.edu	37	4	13606335	13606335	+	Missense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr4:13606335C>G	uc003gmz.1	-	10	2306	c.2189G>C	c.(2188-2190)AGA>ACA	p.R730T	BOD1L_uc010idr.1_Missense_Mutation_p.R67T	NM_148894	NP_683692	Q8NFC6	BOD1L_HUMAN	biorientation of chromosomes in cell division	730	Lys-rich.						DNA binding			ovary(5)|breast(1)	6						AGTTTTCTCTCTTTCAGGCTT	0.368000													35	93					0	0	1	0	0
BOD1L	259282	broad.mit.edu	37	4	13606553	13606553	+	Silent	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr4:13606553C>T	uc003gmz.1	-	10	2088	c.1971G>A	c.(1969-1971)CGG>CGA	p.R657R	BOD1L_uc010idr.1_5'UTR	NM_148894	NP_683692	Q8NFC6	BOD1L_HUMAN	biorientation of chromosomes in cell division	657	Lys-rich.						DNA binding			ovary(5)|breast(1)	6						GGGTAGATGTCCGTCTTTTAT	0.428000													71	208					0	0	1	0	0
CPEB2	132864	broad.mit.edu	37	4	15009019	15009019	+	Missense_Mutation	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr4:15009019C>T	uc003gni.1	+	2	529	c.442C>T	c.(442-444)CAT>TAT	p.H148Y	CPEB2_uc003gnj.1_Missense_Mutation_p.H148Y|CPEB2_uc003gnk.1_Missense_Mutation_p.H148Y|CPEB2_uc003gnl.1_Missense_Mutation_p.H148Y|CPEB2_uc003gnm.1_Missense_Mutation_p.H148Y|CPEB2_uc003gnn.1_Missense_Mutation_p.H148Y	NM_182485	NP_872291	Q7Z5Q1	CPEB2_HUMAN	cytoplasmic polyadenylation element binding	148					regulation of translation	cytoplasm	nucleotide binding|RNA binding			skin(1)	1						TGGCAGAGATCATCGTAGAAC	0.478000													18	52					0	0	1	0	0
SLC34A2	10568	broad.mit.edu	37	4	25677949	25677949	+	Missense_Mutation	SNP	G	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr4:25677949G>T	uc003grr.2	+	13	1732	c.1651G>T	c.(1651-1653)GGC>TGC	p.G551C	SLC34A2_uc003grs.2_Missense_Mutation_p.G550C|SLC34A2_uc010iev.2_Missense_Mutation_p.G550C	NM_006424	NP_006415	O95436	NPT2B_HUMAN	solute carrier family 34 (sodium phosphate),	551	Extracellular (Potential).				cellular phosphate ion homeostasis	apical plasma membrane|brush border membrane|integral to plasma membrane	phosphate binding|sodium ion binding|sodium-dependent phosphate transmembrane transporter activity|sodium:phosphate symporter activity			skin(3)|ovary(1)|kidney(1)	5		Breast(46;0.0503)				CTCGCTGGCCGGCTGGCGGGT	0.612000													7	145					1	1	1	1	0
TLR1	7096	broad.mit.edu	37	4	38799967	38799967	+	Missense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr4:38799967C>G	uc003gtl.2	-	4	760	c.486G>C	c.(484-486)TTG>TTC	p.L162F		NM_003263	NP_003254	Q15399	TLR1_HUMAN	toll-like receptor 1 precursor	162	Extracellular (Potential).				cellular response to triacyl bacterial lipopeptide|detection of triacyl bacterial lipopeptide|inflammatory response|innate immune response|macrophage activation|positive regulation of interleukin-6 biosynthetic process|positive regulation of tumor necrosis factor biosynthetic process	integral to plasma membrane|phagocytic vesicle membrane|Toll-like receptor 1-Toll-like receptor 2 protein complex	protein heterodimerization activity|transmembrane receptor activity			lung(2)|skin(2)|prostate(1)	5						TGCTGATATTCAAATGAGCAA	0.423000													3	92					0	0	1	0	0
WDR19	57728	broad.mit.edu	37	4	39217800	39217800	+	Nonsense_Mutation	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr4:39217800C>T	uc003gtv.2	+	12	1373	c.1219C>T	c.(1219-1221)CGA>TGA	p.R407*	WDR19_uc003gtu.1_Nonsense_Mutation_p.R407*|WDR19_uc011byi.1_Nonsense_Mutation_p.R247*|WDR19_uc003gtw.1_Nonsense_Mutation_p.R4*	NM_025132	NP_079408	Q8NEZ3	WDR19_HUMAN	WD repeat domain 19	407					cell projection organization	microtubule basal body|motile cilium|photoreceptor connecting cilium	binding			large_intestine(1)	1						AATGAATAATCGAGCTTGGTT	0.368000													3	8					0	0	1	0	0
RFC1	5981	broad.mit.edu	37	4	39329178	39329178	+	Missense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr4:39329178G>C	uc003gty.1	-	5	664	c.530C>G	c.(529-531)TCT>TGT	p.S177C	RFC1_uc003gtx.1_Missense_Mutation_p.S177C|RFC1_uc003gtz.1_Missense_Mutation_p.S61C	NM_002913	NP_002904	P35251	RFC1_HUMAN	replication factor C large subunit	177					DNA strand elongation involved in DNA replication|nucleotide-excision repair, DNA gap filling|regulation of transcription, DNA-dependent|S phase of mitotic cell cycle|telomere maintenance via recombination|telomere maintenance via semi-conservative replication|telomere maintenance via telomerase|transcription, DNA-dependent|transcription-coupled nucleotide-excision repair	DNA replication factor C complex|nucleoplasm	ATP binding|DNA clamp loader activity|enzyme activator activity|protein binding			ovary(2)|pancreas(1)|skin(1)	4						CTTCTTATTAGATCTTTGGAC	0.343000													23	62					0	0	1	0	0
PDS5A	23244	broad.mit.edu	37	4	39905724	39905724	+	Missense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr4:39905724C>G	uc003guv.3	-	12	1861	c.1321G>C	c.(1321-1323)GAG>CAG	p.E441Q	PDS5A_uc010ifo.2_Missense_Mutation_p.E401Q|PDS5A_uc003guw.3_Missense_Mutation_p.E441Q	NM_001100399	NP_001093869	Q29RF7	PDS5A_HUMAN	PDS5, regulator of cohesion maintenance, homolog	441					cell division|mitosis|negative regulation of DNA replication	chromatin|nucleus	identical protein binding				0						CTGACTTTCTCTGCAGCTTCC	0.383000													5	30					0	0	1	0	0
BEND4	389206	broad.mit.edu	37	4	42145723	42145723	+	Missense_Mutation	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr4:42145723G>A	uc003gwn.2	-	3	1356	c.776C>T	c.(775-777)TCG>TTG	p.S259L	BEND4_uc003gwm.2_Missense_Mutation_p.S259L|BEND4_uc011byy.1_Missense_Mutation_p.S259L	NM_207406	NP_997289	Q6ZU67	BEND4_HUMAN	BEN domain containing 4 isoform a	259											0						AAAGCTTCCCGAGAGCAGGTA	0.468000													10	49					0	0	1	0	0
ATP8A1	10396	broad.mit.edu	37	4	42467017	42467017	+	Missense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr4:42467017C>G	uc003gwr.2	-	26	2633	c.2401G>C	c.(2401-2403)GAT>CAT	p.D801H	ATP8A1_uc003gwq.2_Missense_Mutation_p.D27H|ATP8A1_uc003gws.2_Missense_Mutation_p.D786H	NM_006095	NP_006086	Q9Y2Q0	AT8A1_HUMAN	ATPase, aminophospholipid transporter (APLT),	801	Cytoplasmic (Potential).	Magnesium (By similarity).			ATP biosynthetic process	chromaffin granule membrane|integral to membrane|plasma membrane	aminophospholipid transporter activity|ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|cation-transporting ATPase activity|magnesium ion binding|phospholipid-translocating ATPase activity			skin(2)|central_nervous_system(1)	3					Phosphatidylserine(DB00144)	TTTGCTCCATCACCGATTGCA	0.428000													18	56					0	0	1	0	0
SGCB	6443	broad.mit.edu	37	4	52899627	52899627	+	Silent	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr4:52899627G>A	uc003gzj.2	-	2	273	c.213C>T	c.(211-213)CTC>CTT	p.L71L	SGCB_uc011bzp.1_Intron	NM_000232	NP_000223	Q16585	SGCB_HUMAN	sarcoglycan, beta	71	Helical; Signal-anchor for type II membrane protein; (Potential).				cytoskeleton organization|muscle organ development	cytoplasm|cytoskeleton|integral to plasma membrane|sarcoglycan complex|sarcolemma					0			GBM - Glioblastoma multiforme(4;7.63e-12)|LUSC - Lung squamous cell carcinoma(32;0.00204)			GGATAAACAAGAGGATAATCA	0.353000													16	61					0	0	1	0	0
FIP1L1	81608	broad.mit.edu	37	4	54319101	54319101	+	Missense_Mutation	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr4:54319101C>T	uc003gzy.2	+	16	1486	c.1300C>T	c.(1300-1302)CTT>TTT	p.L434F	PDGFRA_uc003haa.2_Intron|FIP1L1_uc011bzu.1_Missense_Mutation_p.L428F|FIP1L1_uc003gzz.2_Missense_Mutation_p.L360F|FIP1L1_uc003hab.2_Missense_Mutation_p.L399F|FIP1L1_uc003hac.2_Missense_Mutation_p.L188F|FIP1L1_uc010ign.2_RNA|FIP1L1_uc003had.2_Silent_p.I18I|FIP1L1_uc003hae.2_Silent_p.I18I	NM_030917	NP_112179	Q6UN15	FIP1_HUMAN	FIP1 like 1 isoform 1	434					mRNA processing	nucleus	RNA binding			ovary(1)|skin(1)	2			GBM - Glioblastoma multiforme(3;3.31e-36)|LUSC - Lung squamous cell carcinoma(32;0.0134)			CTTTCCCCATCTTCCTGGTTC	0.333000			T	PDGFRA	idiopathic hypereosinophilic syndrome								20	107					0	0	1	0	0
SRD5A3	79644	broad.mit.edu	37	4	56230311	56230311	+	Silent	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr4:56230311C>T	uc003hau.2	+	3	530	c.435C>T	c.(433-435)TTC>TTT	p.F145F	uc003hav.1_RNA	NM_024592	NP_078868	Q9H8P0	PORED_HUMAN	steroid 5 alpha-reductase 3	145	Lumenal (Potential).				androgen biosynthetic process|dolichol metabolic process|dolichol-linked oligosaccharide biosynthetic process|polyprenol catabolic process	endoplasmic reticulum membrane|integral to membrane	3-oxo-5-alpha-steroid 4-dehydrogenase activity|oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor				0	all_cancers(7;0.0308)|all_lung(4;0.00195)|Lung NSC(11;0.00431)|all_epithelial(27;0.0425)|Glioma(25;0.08)|all_neural(26;0.101)		Epithelial(7;0.0179)			GAAGACTCTTCGAGTGCCTCT	0.478000													49	115					0	0	1	0	0
EXOC1	55763	broad.mit.edu	37	4	56736998	56736998	+	Missense_Mutation	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr4:56736998C>T	uc003hbe.1	+	6	916	c.758C>T	c.(757-759)TCT>TTT	p.S253F	EXOC1_uc003hbf.1_Missense_Mutation_p.S253F|EXOC1_uc003hbg.1_Missense_Mutation_p.S253F	NM_018261	NP_060731	Q9NV70	EXOC1_HUMAN	exocyst complex component 1 isoform 1	253	Potential.				exocytosis|protein transport	exocyst	protein binding			ovary(2)|skin(2)|lung(1)|central_nervous_system(1)	6	Glioma(25;0.08)|all_neural(26;0.101)					GATCAGATCTCTGAAAGCAAC	0.353000													26	89					0	0	1	0	0
TMPRSS11D	9407	broad.mit.edu	37	4	68719872	68719872	+	Missense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr4:68719872G>C	uc003hdq.2	-	3	228	c.163C>G	c.(163-165)CAA>GAA	p.Q55E	LOC550112_uc003hdl.3_Intron|TMPRSS11D_uc011caj.1_5'UTR	NM_004262	NP_004253	O60235	TM11D_HUMAN	transmembrane protease, serine 11D	55	SEA.|Extracellular (Potential).				proteolysis|respiratory gaseous exchange	extracellular region|integral to plasma membrane	serine-type endopeptidase activity			ovary(1)	1						TTTAGGAGTTGAAAACTGCTC	0.308000													13	63					0	0	1	0	0
TMPRSS11A	339967	broad.mit.edu	37	4	68777208	68777208	+	Missense_Mutation	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr4:68777208C>T	uc003hdr.1	-	10	1239	c.1118G>A	c.(1117-1119)GGA>GAA	p.G373E	LOC550112_uc003hdl.3_Intron|TMPRSS11A_uc003hds.1_Missense_Mutation_p.G370E	NM_182606	NP_872412	Q6ZMR5	TM11A_HUMAN	transmembrane protease, serine 11A isoform 1	373	Peptidase S1.|Extracellular (Potential).				cell cycle|proteolysis	extracellular region|integral to plasma membrane	serine-type endopeptidase activity			skin(1)	1						GACTAAAGGTCCCCCAGAATC	0.343000													21	106					0	0	1	0	0
SULT1B1	27284	broad.mit.edu	37	4	70620485	70620485	+	Missense_Mutation	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr4:70620485C>T	uc003hen.2	-	3	478	c.180G>A	c.(178-180)ATG>ATA	p.M60I		NM_014465	NP_055280	O43704	ST1B1_HUMAN	sulfotransferase family, cytosolic, 1B, member	60					3'-phosphoadenosine 5'-phosphosulfate metabolic process|cellular biogenic amine metabolic process|flavonoid metabolic process|steroid metabolic process|sulfation|thyroid hormone metabolic process|xenobiotic metabolic process	cytosol					0						CATTTAGAATCATGTCTATAA	0.348000													39	97					0	0	1	0	0
PARM1	25849	broad.mit.edu	37	4	75938045	75938045	+	Missense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr4:75938045C>G	uc003hih.1	+	2	694	c.454C>G	c.(454-456)CAA>GAA	p.Q152E		NM_015393	NP_056208	Q6UWI2	PARM1_HUMAN	prostatic androgen-repressed message-1	152	Extracellular (Potential).				positive regulation of telomerase activity	early endosome|endosome membrane|Golgi membrane|integral to membrane|late endosome|plasma membrane				ovary(1)	1						CATCTCCCCTCAAGCTCCAGC	0.577000													4	291					0	0	1	0	0
SHROOM3	57619	broad.mit.edu	37	4	77677800	77677800	+	Silent	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr4:77677800G>A	uc011cbx.1	+	8	5861	c.4908G>A	c.(4906-4908)CAG>CAA	p.Q1636Q	SHROOM3_uc003hkg.2_Silent_p.Q1414Q	NM_020859	NP_065910	Q8TF72	SHRM3_HUMAN	shroom family member 3 protein	1636					apical protein localization|cell morphogenesis|cellular pigment accumulation|pattern specification process|regulation of cell shape	adherens junction|apical junction complex|apical plasma membrane|cytoplasm|microtubule	actin binding			skin(2)|ovary(1)	3			Lung(101;0.0903)			CACCCATCCAGACTCAAAGCC	0.522000													28	89					0	0	1	0	0
HELQ	113510	broad.mit.edu	37	4	84368045	84368045	+	Silent	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr4:84368045C>T	uc003hom.2	-	4	1514	c.1335G>A	c.(1333-1335)GTG>GTA	p.V445V	HELQ_uc010ikb.2_Intron|HELQ_uc003hol.3_RNA|HELQ_uc010ikc.2_RNA	NM_133636	NP_598375	Q8TDG4	HELQ_HUMAN	DNA helicase HEL308	445	Helicase ATP-binding.						ATP binding|ATP-dependent helicase activity|nucleic acid binding			ovary(1)|breast(1)|skin(1)	3						TCAAGGAGTTCACCAAGCTAT	0.343000								Direct_reversal_of_damage|Other_identified_genes_with_known_or_suspected_DNA_repair_function					20	111					0	0	1	0	0
ARHGAP24	83478	broad.mit.edu	37	4	86916229	86916229	+	Silent	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr4:86916229G>A	uc003hpk.2	+	9	1871	c.1422G>A	c.(1420-1422)ACG>ACA	p.T474T	ARHGAP24_uc003hpl.2_Silent_p.T379T|ARHGAP24_uc010ikf.2_Silent_p.T389T|ARHGAP24_uc003hpm.2_Silent_p.T381T	NM_001025616	NP_001020787	Q8N264	RHG24_HUMAN	Rho GTPase activating protein 24 isoform 1	474					angiogenesis|cell differentiation|regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cell projection|cytoskeleton|cytosol|focal adhesion	GTPase activator activity|protein binding				0		Hepatocellular(203;0.114)|all_hematologic(202;0.21)|Acute lymphoblastic leukemia(40;0.242)		OV - Ovarian serous cystadenocarcinoma(123;0.000571)		AAATGGGCACGCACAGTGTAC	0.517000													16	78					0	0	1	0	0
PTPN13	5783	broad.mit.edu	37	4	87685874	87685874	+	Silent	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr4:87685874C>T	uc003hpz.2	+	25	4626	c.4146C>T	c.(4144-4146)GTC>GTT	p.V1382V	PTPN13_uc003hpy.2_Silent_p.V1382V|PTPN13_uc003hqa.2_Silent_p.V1363V|PTPN13_uc003hqb.2_Silent_p.V1191V	NM_080683	NP_542414	Q12923	PTN13_HUMAN	protein tyrosine phosphatase, non-receptor type	1382	PDZ 2.					cytoplasm|cytoskeleton|plasma membrane	protein binding|protein binding|protein tyrosine phosphatase activity			ovary(4)|breast(1)|kidney(1)	6		Hepatocellular(203;0.114)|all_hematologic(202;0.21)|Acute lymphoblastic leukemia(40;0.242)		OV - Ovarian serous cystadenocarcinoma(123;0.00082)		GGATAAGTGTCACGGTACTGT	0.338000													8	22					0	0	1	0	0
AFF1	4299	broad.mit.edu	37	4	88047478	88047478	+	Missense_Mutation	SNP	C	T	T	rs140882176		TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr4:88047478C>T	uc003hqj.3	+	13	3187	c.2780C>T	c.(2779-2781)TCG>TTG	p.S927L	AFF1_uc011ccz.1_Missense_Mutation_p.S934L|AFF1_uc003hqk.3_Missense_Mutation_p.S927L|AFF1_uc011cda.1_Missense_Mutation_p.S565L	NM_005935	NP_005926	P51825	AFF1_HUMAN	myeloid/lymphoid or mixed-lineage leukemia	927						nucleus	sequence-specific DNA binding transcription factor activity			breast(1)	1		Acute lymphoblastic leukemia(40;0.0935)|all_hematologic(202;0.111)|Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;0.000233)		AGAAGCTCCTCGGAGCACAAG	0.532000													20	52					0	0	1	0	0
HSD17B11	51170	broad.mit.edu	37	4	88312083	88312083	+	Missense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr4:88312083C>G	uc003hqp.2	-	1	373	c.140G>C	c.(139-141)GGA>GCA	p.G47A		NM_016245	NP_057329	Q8NBQ5	DHB11_HUMAN	estradiol 17-beta-dehydrogenase 11	47	NADP (By similarity).				androgen catabolic process|steroid biosynthetic process	cytoplasm|extracellular region	binding|estradiol 17-beta-dehydrogenase activity			ovary(2)	2		Hepatocellular(203;0.114)|all_hematologic(202;0.21)|Acute lymphoblastic leukemia(40;0.242)		OV - Ovarian serous cystadenocarcinoma(123;0.000339)		TCTCCCAATTCCATGCCCAGC	0.423000													26	117					0	0	1	0	0
FAM13A	10144	broad.mit.edu	37	4	89941646	89941646	+	Nonsense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr4:89941646G>C	uc003hse.1	-	3	600	c.392C>G	c.(391-393)TCA>TGA	p.S131*	FAM13A_uc003hsf.1_5'UTR|FAM13A_uc003hsh.1_5'UTR|FAM13A_uc003hsi.2_Nonsense_Mutation_p.S131*|FAM13A_uc003hsj.2_Nonsense_Mutation_p.S131*	NM_014883	NP_055698	O94988	FA13A_HUMAN	family with sequence similarity 13, member A1	131	Rho-GAP.				regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity			ovary(1)|liver(1)	2						CTGCAACGCTGAGGTGATCAG	0.433000													13	40					0	0	1	0	0
TIGD2	166815	broad.mit.edu	37	4	90035089	90035089	+	Missense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr4:90035089C>G	uc003hsk.2	+	1	1122	c.964C>G	c.(964-966)CTG>GTG	p.L322V	FAM13A_uc003hsh.1_5'Flank	NM_145715	NP_663761	Q4W5G0	TIGD2_HUMAN	tigger transposable element derived 2	322	DDE.				regulation of transcription, DNA-dependent	chromosome, centromeric region|nucleus	DNA binding				0		Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;3.86e-05)		tgtcacaagtctgattcaacc	0.189000													6	28					0	0	1	0	0
SMARCAD1	56916	broad.mit.edu	37	4	95174009	95174009	+	Missense_Mutation	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr4:95174009G>A	uc003htc.3	+	9	1387	c.1132G>A	c.(1132-1134)GAA>AAA	p.E378K	SMARCAD1_uc003htb.3_Missense_Mutation_p.E378K|SMARCAD1_uc003htd.3_Missense_Mutation_p.E378K|SMARCAD1_uc010ila.2_Missense_Mutation_p.E241K|SMARCAD1_uc011cdw.1_5'Flank	NM_020159	NP_064544	Q9H4L7	SMRCD_HUMAN	SWI/SNF-related, matrix-associated	378					chromatin modification|nucleotide metabolic process|positive regulation of transcription, DNA-dependent|protein homooligomerization|regulation of DNA recombination	nuclear matrix	ATP binding|DNA binding|helicase activity			skin(2)|ovary(1)|breast(1)	4				OV - Ovarian serous cystadenocarcinoma(123;4.33e-08)		TAGTAGTGGTGAAGAAGTGAT	0.353000													27	99					0	0	1	0	0
HPGDS	27306	broad.mit.edu	37	4	95223384	95223384	+	Silent	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr4:95223384G>A	uc003hte.1	-	5	439	c.348C>T	c.(346-348)TTC>TTT	p.F116F		NM_014485	NP_055300	O60760	HPGDS_HUMAN	prostaglandin D2 synthase, hematopoietic	116	GST C-terminal.				locomotory behavior|prostaglandin biosynthetic process|signal transduction	cytoplasm|nucleus	calcium ion binding|glutathione transferase activity|magnesium ion binding|prostaglandin-D synthase activity|protein homodimerization activity			ovary(1)	1					Glutathione(DB00143)	GCAGCTCATTGAACATCTGCT	0.383000													57	169					0	0	1	0	0
BMPR1B	658	broad.mit.edu	37	4	96070069	96070069	+	Nonsense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr4:96070069C>G	uc003htm.3	+	11	1521	c.1247C>G	c.(1246-1248)TCA>TGA	p.S416*	BMPR1B_uc010ilb.2_Nonsense_Mutation_p.S416*|BMPR1B_uc003htn.3_Nonsense_Mutation_p.S416*	NM_001203	NP_001194	O00238	BMR1B_HUMAN	bone morphogenetic protein receptor, type IB	416	Cytoplasmic (Potential).|Protein kinase.				BMP signaling pathway|cartilage condensation|eye development|limb morphogenesis|ovarian cumulus expansion|positive regulation of bone mineralization|positive regulation of osteoblast differentiation	receptor complex	ATP binding|metal ion binding|receptor signaling protein serine/threonine kinase activity|SMAD binding|transforming growth factor beta receptor activity			lung(4)|skin(2)|stomach(1)|breast(1)	8		Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;6.51e-07)		AGATGTGTATCAGGAGGTAAG	0.393000													36	130					0	0	1	0	0
RAP1GDS1	5910	broad.mit.edu	37	4	99214624	99214624	+	Missense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr4:99214624G>C	uc003htx.3	+	2	260	c.70G>C	c.(70-72)GAA>CAA	p.E24Q	RAP1GDS1_uc003htu.2_Missense_Mutation_p.E24Q|RAP1GDS1_uc003htw.3_Missense_Mutation_p.E25Q|RAP1GDS1_uc003htv.3_Missense_Mutation_p.E25Q|RAP1GDS1_uc003htz.3_Missense_Mutation_p.E24Q|RAP1GDS1_uc003hty.3_Missense_Mutation_p.E25Q|RAP1GDS1_uc003hua.3_Missense_Mutation_p.E25Q	NM_001100427	NP_001093897	P52306	GDS1_HUMAN	RAP1, GTP-GDP dissociation stimulator 1 isoform	24							binding|GTPase activator activity			ovary(1)|lung(1)|breast(1)	3				OV - Ovarian serous cystadenocarcinoma(123;2.9e-07)|LUSC - Lung squamous cell carcinoma(1;0.0253)|Lung(1;0.0576)		GGATAGTTTAGAAGGATGCTT	0.348000			T	NUP98	T-ALL								3	70					0	0	1	0	0
ADH4	127	broad.mit.edu	37	4	100047767	100047767	+	Missense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr4:100047767C>G	uc003hun.2	-	8	1172	c.1096G>C	c.(1096-1098)GAC>CAC	p.D366H	uc003hum.1_Intron|ADH4_uc011ced.1_Missense_Mutation_p.D385H	NM_000670	NP_000661	P08319	ADH4_HUMAN	class II alcohol dehydrogenase, pi subunit	366					alcohol catabolic process|cellular aldehyde metabolic process|ethanol oxidation|quinone cofactor metabolic process|retinol metabolic process|xenobiotic metabolic process	cytosol|microtubule cytoskeleton	alcohol dehydrogenase activity, zinc-dependent|all-trans retinal binding|benzaldehyde dehydrogenase activity|NAD binding|NADPH:quinone reductase activity|retinol binding|retinol dehydrogenase activity|zinc ion binding			skin(2)	2				OV - Ovarian serous cystadenocarcinoma(123;4.48e-08)	NADH(DB00157)	TTCATTAGGTCAAATGCCTCA	0.348000													21	141					0	0	1	0	0
MTTP	4547	broad.mit.edu	37	4	100542386	100542386	+	Silent	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr4:100542386C>T	uc003hvc.3	+	18	2767	c.2511C>T	c.(2509-2511)TTC>TTT	p.F837F	MTTP_uc011cej.1_Silent_p.F864F	NM_000253	NP_000244	P55157	MTP_HUMAN	microsomal triglyceride transfer protein large	837					lipid metabolic process|lipoprotein metabolic process	endoplasmic reticulum lumen	lipid binding|lipid transporter activity			ovary(3)|central_nervous_system(1)	4				OV - Ovarian serous cystadenocarcinoma(123;6.04e-09)	Hesperetin(DB01094)	AAGCTCCATTCAGGTAAGATG	0.438000													40	154					0	0	1	0	0
MANBA	4126	broad.mit.edu	37	4	103579009	103579009	+	Missense_Mutation	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr4:103579009C>T	uc003hwg.2	-	12	1634	c.1534G>A	c.(1534-1536)GAA>AAA	p.E512K	MANBA_uc011ces.1_Missense_Mutation_p.E455K	NM_005908	NP_005899	O00462	MANBA_HUMAN	mannosidase, beta A, lysosomal precursor	512					carbohydrate metabolic process|protein modification process	lysosome	beta-mannosidase activity|cation binding			ovary(1)	1		Hepatocellular(203;0.217)		OV - Ovarian serous cystadenocarcinoma(123;4.44e-08)		GCAACAGTTTCAGCCCCATTT	0.373000													27	77					0	0	1	0	0
MANBA	4126	broad.mit.edu	37	4	103610745	103610745	+	Nonsense_Mutation	SNP	C	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr4:103610745C>A	uc003hwg.2	-	7	1046	c.946G>T	c.(946-948)GAA>TAA	p.E316*	MANBA_uc011ces.1_Nonsense_Mutation_p.E259*	NM_005908	NP_005899	O00462	MANBA_HUMAN	mannosidase, beta A, lysosomal precursor	316					carbohydrate metabolic process|protein modification process	lysosome	beta-mannosidase activity|cation binding			ovary(1)	1		Hepatocellular(203;0.217)		OV - Ovarian serous cystadenocarcinoma(123;4.44e-08)		GCTGATTTTTCAATATTTAAG	0.289000													23	90					2.89027e-11	2.987e-11	1	1	0
COL25A1	84570	broad.mit.edu	37	4	109817864	109817864	+	Missense_Mutation	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr4:109817864C>T	uc003hze.1	-	15	1396	c.865G>A	c.(865-867)GAC>AAC	p.D289N	COL25A1_uc003hzg.2_Missense_Mutation_p.D289N|COL25A1_uc003hzd.2_RNA|COL25A1_uc003hzf.2_Missense_Mutation_p.D70N	NM_198721	NP_942014	Q9BXS0	COPA1_HUMAN	collagen, type XXV, alpha 1 isoform 1	289	Extracellular (Potential).|Collagen-like 3.					collagen|extracellular space	beta-amyloid binding|heparin binding			ovary(2)	2		Hepatocellular(203;0.217)		OV - Ovarian serous cystadenocarcinoma(123;0.000173)		TCTCCAGCGTCTCCCTGAGGA	0.393000													5	151					0	0	1	0	0
C4orf21	55345	broad.mit.edu	37	4	113482022	113482022	+	Silent	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr4:113482022C>T	uc003iau.2	-	19	5038	c.4827G>A	c.(4825-4827)TTG>TTA	p.L1609L	C4orf21_uc003iav.2_RNA|C4orf21_uc003iat.2_Silent_p.L67L	NM_018392	NP_060862	Q6ZU11	YD002_HUMAN	prematurely terminated mRNA decay factor-like	431						integral to membrane	zinc ion binding				0		Ovarian(17;0.156)		OV - Ovarian serous cystadenocarcinoma(123;0.000676)		GTACCTGAATCAACTCACTAG	0.388000													14	79					0	0	1	0	0
ANK2	287	broad.mit.edu	37	4	114163301	114163301	+	Missense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr4:114163301G>C	uc003ibe.3	+	9	927	c.827G>C	c.(826-828)AGA>ACA	p.R276T	ANK2_uc003ibd.3_Missense_Mutation_p.R255T|ANK2_uc003ibf.3_Missense_Mutation_p.R276T|ANK2_uc003ibc.2_Missense_Mutation_p.R252T|ANK2_uc011cgb.1_Missense_Mutation_p.R291T	NM_001148	NP_001139	Q01484	ANK2_HUMAN	ankyrin 2 isoform 1	276	ANK 8.				axon guidance|signal transduction	apical plasma membrane|basolateral plasma membrane|cytoskeleton|cytosol|sarcomere	protein binding|protein binding			central_nervous_system(7)|ovary(3)|large_intestine(2)|breast(1)|skin(1)	14		Ovarian(17;0.0448)|Hepatocellular(203;0.218)		OV - Ovarian serous cystadenocarcinoma(123;4.92e-05)		GCTTCCAAAAGAGGAAATACA	0.453000													13	40					0	0	1	0	0
NDST3	9348	broad.mit.edu	37	4	119161697	119161697	+	Missense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr4:119161697G>C	uc003ibx.2	+	11	2540	c.2137G>C	c.(2137-2139)GAC>CAC	p.D713H		NM_004784	NP_004775	O95803	NDST3_HUMAN	N-deacetylase/N-sulfotransferase (heparan	713	Lumenal (Potential).|Heparan sulfate N-sulfotransferase 3.					Golgi membrane|integral to membrane	[heparan sulfate]-glucosamine N-sulfotransferase activity|hydrolase activity			large_intestine(1)	1						ATCACATGAAGACCCTGCAGC	0.453000													20	46					0	0	1	0	0
EXOSC9	5393	broad.mit.edu	37	4	122735121	122735121	+	Missense_Mutation	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr4:122735121G>A	uc003iea.2	+	10	1183	c.1075G>A	c.(1075-1077)GAA>AAA	p.E359K	EXOSC9_uc003idz.2_Missense_Mutation_p.E359K|EXOSC9_uc003ieb.2_Missense_Mutation_p.E343K|EXOSC9_uc010inp.1_RNA	NM_005033	NP_005024	Q06265	EXOS9_HUMAN	exosome component 9 isoform 2	359					exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay|immune response|nuclear mRNA surveillance|nuclear polyadenylation-dependent rRNA catabolic process|positive regulation of cell growth|rRNA processing	cytosol|nuclear exosome (RNase complex)|nucleolus|nucleolus|nucleus	3'-5'-exoribonuclease activity|AU-rich element binding|protein binding				0						GGAAGATGATGAAGGCGGTGG	0.453000													42	124					0	0	1	0	0
FGF2	2247	broad.mit.edu	37	4	123748407	123748407	+	Missense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr4:123748407C>G	uc003iev.1	+	1	545	c.477C>G	c.(475-477)TTC>TTG	p.F159L		NM_002006	NP_001997	P09038	FGF2_HUMAN	fibroblast growth factor 2	159					activation of MAPK activity|branching involved in ureteric bud morphogenesis|cell migration involved in sprouting angiogenesis|chemotaxis|chondroblast differentiation|embryonic morphogenesis|fibroblast growth factor receptor signaling pathway|inositol phosphate biosynthetic process|insulin receptor signaling pathway|negative regulation of blood vessel endothelial cell migration|negative regulation of cell death|organ morphogenesis|phosphatidylinositol biosynthetic process|positive regulation of angiogenesis|positive regulation of blood vessel endothelial cell migration|positive regulation of cardiac muscle cell proliferation|positive regulation of cell division|positive regulation of cell fate specification|positive regulation of ERK1 and ERK2 cascade|positive regulation of phosphatidylinositol 3-kinase activity|positive regulation of phospholipase C activity|Ras protein signal transduction|release of sequestered calcium ion into cytosol|wound healing	extracellular space	fibroblast growth factor receptor binding|growth factor activity|heparin binding|ligand-dependent nuclear receptor transcription coactivator activity			ovary(1)|lung(1)|central_nervous_system(1)	3					Pentosan Polysulfate(DB00686)	CCGGCCACTTCAAGGACCCCA	0.711000													7	24					0	0	1	0	0
FAT4	79633	broad.mit.edu	37	4	126402738	126402738	+	Missense_Mutation	SNP	C	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr4:126402738C>A	uc003ifj.3	+	15	12661	c.12661C>A	c.(12661-12663)CAG>AAG	p.Q4221K	FAT4_uc011cgp.1_Missense_Mutation_p.Q2462K|FAT4_uc003ifi.1_Missense_Mutation_p.Q1699K	NM_024582	NP_078858	Q6V0I7	FAT4_HUMAN	FAT tumor suppressor homolog 4 precursor	4221	Laminin G-like 2.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(9)|skin(5)|upper_aerodigestive_tract(2)|pancreas(2)	18						CCACATGAGTCAGAATGAGAA	0.438000													4	100					0.00024832	0.000252469	1	1	0
PLK4	10733	broad.mit.edu	37	4	128811391	128811391	+	Silent	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr4:128811391G>C	uc003ifo.2	+	7	2075	c.1830G>C	c.(1828-1830)GTG>GTC	p.V610V	PLK4_uc011cgs.1_Silent_p.V578V|PLK4_uc011cgt.1_Silent_p.V569V	NM_014264	NP_055079	O00444	PLK4_HUMAN	polo-like kinase 4	610					G2/M transition of mitotic cell cycle|positive regulation of centriole replication|trophoblast giant cell differentiation	centriole|cleavage furrow|cytosol|nucleolus	ATP binding|protein binding|protein serine/threonine kinase activity|protein tyrosine kinase activity				0						AAAAGGCTGTGGTATGTCTGT	0.348000													21	56					0	0	1	0	0
MFSD8	256471	broad.mit.edu	37	4	128842679	128842679	+	Silent	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr4:128842679C>T	uc003ifp.2	-	12	1513	c.1350G>A	c.(1348-1350)CAG>CAA	p.Q450Q	MFSD8_uc011cgu.1_Silent_p.Q405Q|MFSD8_uc011cgv.1_3'UTR	NM_152778	NP_689991	Q8NHS3	MFSD8_HUMAN	major facilitator superfamily domain containing	450	Cytoplasmic (Potential).				cell death|transmembrane transport	integral to membrane|lysosomal membrane				ovary(1)|liver(1)	2						CCTGGCTTACCTGAGGTTTTG	0.378000													32	86					0	0	1	0	0
TTC29	83894	broad.mit.edu	37	4	147830196	147830196	+	Missense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr4:147830196C>G	uc003ikw.3	-	5	609	c.382G>C	c.(382-384)GAG>CAG	p.E128Q	TTC29_uc010ipc.2_RNA|TTC29_uc003ikx.3_Missense_Mutation_p.E154Q|TTC29_uc010ipd.1_Missense_Mutation_p.E128Q	NM_031956	NP_114162	Q8NA56	TTC29_HUMAN	tetratricopeptide repeat domain 29	128							binding				0	all_hematologic(180;0.151)					TCAGCGTCCTCAGCCCTGGTC	0.562000													39	162					0	0	1	0	0
KIAA0922	23240	broad.mit.edu	37	4	154533509	154533509	+	Missense_Mutation	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr4:154533509G>A	uc003inm.3	+	26	3573	c.3521G>A	c.(3520-3522)AGA>AAA	p.R1174K	KIAA0922_uc010ipp.2_Missense_Mutation_p.R1175K|KIAA0922_uc010ipq.2_Missense_Mutation_p.R943K	NM_015196	NP_056011	A2VDJ0	T131L_HUMAN	hypothetical protein LOC23240 isoform 2	1174	Cytoplasmic (Potential).					integral to membrane				upper_aerodigestive_tract(1)|ovary(1)	2	all_hematologic(180;0.093)	Renal(120;0.118)				AAAACATCTAGAGAAGACATG	0.343000													12	47					0	0	1	0	0
DCHS2	54798	broad.mit.edu	37	4	155157332	155157332	+	Silent	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr4:155157332G>C	uc003inw.2	-	25	7107	c.7107C>G	c.(7105-7107)CTC>CTG	p.L2369L		NM_017639	NP_060109	Q6V1P9	PCD23_HUMAN	dachsous 2 isoform 1	2369	Cadherin 21.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(3)|pancreas(1)	4	all_hematologic(180;0.208)	Renal(120;0.0854)		LUSC - Lung squamous cell carcinoma(193;0.107)		CAATGAGGAAGAGATCATGAT	0.398000													4	156					0	0	1	0	0
DCHS2	54798	broad.mit.edu	37	4	155219826	155219826	+	Missense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr4:155219826C>G	uc003inw.2	-	18	4275	c.4275G>C	c.(4273-4275)GAG>GAC	p.E1425D		NM_017639	NP_060109	Q6V1P9	PCD23_HUMAN	dachsous 2 isoform 1	1425	Cadherin 12.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(3)|pancreas(1)	4	all_hematologic(180;0.208)	Renal(120;0.0854)		LUSC - Lung squamous cell carcinoma(193;0.107)		CTCCTGACATCTCATTTATAG	0.398000													5	110					0	0	1	0	0
FGA	2243	broad.mit.edu	37	4	155505632	155505632	+	Missense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr4:155505632C>G	uc003iod.1	-	6	2303	c.2245G>C	c.(2245-2247)GAA>CAA	p.E749Q		NM_000508	NP_000499	P02671	FIBA_HUMAN	fibrinogen, alpha polypeptide isoform alpha-E	749	Fibrinogen C-terminal.				platelet activation|platelet degranulation|protein polymerization|response to calcium ion|signal transduction	external side of plasma membrane|fibrinogen complex|platelet alpha granule lumen	eukaryotic cell surface binding|protein binding, bridging|receptor binding			ovary(2)|breast(1)	3	all_hematologic(180;0.215)	Renal(120;0.0458)			Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Sucralfate(DB00364)|Tenecteplase(DB00031)	GCATAGCCTTCAGCCTCAGAG	0.517000													40	142					0	0	1	0	0
FSTL5	56884	broad.mit.edu	37	4	162680668	162680668	+	Missense_Mutation	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr4:162680668C>T	uc003iqh.2	-	6	1058	c.622G>A	c.(622-624)GAA>AAA	p.E208K	FSTL5_uc003iqi.2_Missense_Mutation_p.E207K|FSTL5_uc010iqv.2_Missense_Mutation_p.E207K	NM_020116	NP_064501	Q8N475	FSTL5_HUMAN	follistatin-like 5 isoform a	208	EF-hand 1.					extracellular region	calcium ion binding			ovary(2)|pancreas(2)|upper_aerodigestive_tract(1)|large_intestine(1)|central_nervous_system(1)|skin(1)	8	all_hematologic(180;0.24)			COAD - Colon adenocarcinoma(41;0.179)		TTGCCAAGTTCTTCCTGTTTT	0.264000													17	99					0	0	1	0	0
NPY1R	4886	broad.mit.edu	37	4	164246583	164246583	+	Missense_Mutation	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr4:164246583G>A	uc003iqm.1	-	3	1293	c.1027C>T	c.(1027-1029)CGG>TGG	p.R343W	NPY1R_uc011cjj.1_Missense_Mutation_p.R100W	NM_000909	NP_000900	P25929	NPY1R_HUMAN	neuropeptide Y receptor Y1	343	Cytoplasmic (Potential).				inhibition of adenylate cyclase activity by G-protein signaling pathway|outflow tract morphogenesis	integral to plasma membrane	protein binding			lung(1)|pancreas(1)	2	all_hematologic(180;0.166)	Prostate(90;0.0959)|all_neural(102;0.223)				TCATCATCCCGAGACCGGAAA	0.393000													50	157					0	0	1	0	0
PALLD	23022	broad.mit.edu	37	4	169842792	169842792	+	Silent	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr4:169842792G>C	uc011cjx.1	+	18	3169	c.2958G>C	c.(2956-2958)CTG>CTC	p.L986L	CBR4_uc011cjy.1_Intron|PALLD_uc003iru.2_Silent_p.L969L|PALLD_uc003irv.2_Silent_p.L587L|PALLD_uc003irw.2_Silent_p.L471L|PALLD_uc003irx.2_Silent_p.L195L	NM_016081	NP_057165	Q8WX93	PALLD_HUMAN	palladin isoform 2	1193	Ig-like C2-type 4.|Interaction with EZR.				cytoskeleton organization	actin filament|focal adhesion|lamellipodium|nucleus|ruffle|sarcomere	actin binding|muscle alpha-actinin binding			ovary(1)	1		Prostate(90;0.00996)|Renal(120;0.0203)|Melanoma(52;0.144)		GBM - Glioblastoma multiforme(119;0.204)		TGCACTCTCTGATCATAGAGC	0.542000									Pancreatic_Cancer_Familial_Clustering_of				19	50					0	0	1	0	0
AADAT	51166	broad.mit.edu	37	4	170991780	170991780	+	Silent	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr4:170991780G>A	uc003isr.2	-	6	1020	c.678C>T	c.(676-678)CTC>CTT	p.L226L	AADAT_uc003iss.2_Silent_p.L226L|AADAT_uc003ist.2_Silent_p.L230L	NM_016228	NP_057312	Q8N5Z0	AADAT_HUMAN	kynurenine aminotransferase II	226					2-oxoglutarate metabolic process|biosynthetic process|glutamate metabolic process|lysine catabolic process	mitochondrial matrix	2-aminoadipate transaminase activity|kynurenine-oxoglutarate transaminase activity|protein homodimerization activity				0		Prostate(90;0.00601)|Renal(120;0.0183)|all_neural(102;0.122)|Melanoma(52;0.17)		GBM - Glioblastoma multiforme(119;0.0355)|LUSC - Lung squamous cell carcinoma(193;0.118)	L-Glutamic Acid(DB00142)|Pyridoxal Phosphate(DB00114)	CTTCTATTATGAGGAAATCAT	0.254000													17	72					0	0	1	0	0
GALNTL6	442117	broad.mit.edu	37	4	173873354	173873354	+	Nonsense_Mutation	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr4:173873354G>A	uc003isv.2	+	10	2052	c.1316G>A	c.(1315-1317)TGG>TAG	p.W439*		NM_001034845	NP_001030017	Q49A17	GLTL6_HUMAN	N-acetylgalactosaminyltransferase-like 6	439	Lumenal (Potential).					Golgi membrane|integral to membrane	metal ion binding|polypeptide N-acetylgalactosaminyltransferase activity|sugar binding			breast(2)|ovary(1)|skin(1)	4						GCTGTGGCCTGGGACGTGCCT	0.592000													4	60					0	0	1	0	0
WDR17	116966	broad.mit.edu	37	4	177052785	177052785	+	Missense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr4:177052785C>G	uc003iuj.2	+	8	1222	c.1066C>G	c.(1066-1068)CAA>GAA	p.Q356E	WDR17_uc003iuk.2_Missense_Mutation_p.Q332E|WDR17_uc003ium.3_Missense_Mutation_p.Q332E|WDR17_uc003iul.1_Intron	NM_170710	NP_733828	Q8IZU2	WDR17_HUMAN	WD repeat domain 17 isoform 1	356										ovary(2)|skin(2)|pancreas(1)|central_nervous_system(1)	6		Breast(14;0.00015)|Melanoma(52;0.00886)|Prostate(90;0.00996)|Renal(120;0.0183)|all_hematologic(60;0.107)|all_neural(102;0.164)		all cancers(43;2.21e-20)|Epithelial(43;9.71e-18)|OV - Ovarian serous cystadenocarcinoma(60;2.38e-09)|GBM - Glioblastoma multiforme(59;0.000295)|STAD - Stomach adenocarcinoma(60;0.000703)|LUSC - Lung squamous cell carcinoma(193;0.0232)		AACACAGAATCAAGCATTTTC	0.388000													71	211					0	0	1	0	0
VEGFC	7424	broad.mit.edu	37	4	177713327	177713327	+	Missense_Mutation	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr4:177713327C>T	uc003ius.1	-	1	569	c.139G>A	c.(139-141)GAG>AAG	p.E47K		NM_005429	NP_005420	P49767	VEGFC_HUMAN	vascular endothelial growth factor C	47					angiogenesis|induction of positive chemotaxis|platelet activation|platelet degranulation|positive regulation of cell division|positive regulation of mast cell chemotaxis|substrate-dependent cell migration|vascular endothelial growth factor receptor signaling pathway	membrane|platelet alpha granule lumen	chemoattractant activity|growth factor activity			lung(5)	5		Breast(14;0.000223)|Renal(120;0.00988)|Prostate(90;0.00996)|Melanoma(52;0.0101)|all_hematologic(60;0.107)|all_neural(102;0.164)		all cancers(43;1.59e-18)|Epithelial(43;3.68e-16)|OV - Ovarian serous cystadenocarcinoma(60;8.52e-09)|GBM - Glioblastoma multiforme(59;0.000546)|STAD - Stomach adenocarcinoma(60;0.00308)|Colorectal(24;0.025)|COAD - Colon adenocarcinoma(29;0.0359)|LUSC - Lung squamous cell carcinoma(193;0.0397)		ACCGTGGCCTCGCCCGCGTCG	0.612000													12	38					0	0	1	0	0
ODZ3	55714	broad.mit.edu	37	4	183664378	183664378	+	Silent	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr4:183664378C>T	uc003ivd.1	+	18	3472	c.3435C>T	c.(3433-3435)GTC>GTT	p.V1145V	ODZ3_uc003ive.1_Silent_p.V551V	NM_001080477	NP_001073946	Q9P273	TEN3_HUMAN	odz, odd Oz/ten-m homolog 3	1145	Extracellular (Potential).				signal transduction	integral to membrane					0		all_lung(41;2.69e-14)|Lung NSC(41;1.92e-11)|Melanoma(52;1.74e-05)|Colorectal(36;0.0062)|Breast(14;0.00748)|all_hematologic(60;0.0162)|Renal(120;0.0246)|Hepatocellular(41;0.0268)|Prostate(90;0.0283)|all_neural(102;0.155)|Medulloblastoma(177;0.184)		all cancers(43;1.42e-24)|Epithelial(43;6.86e-23)|OV - Ovarian serous cystadenocarcinoma(60;2.16e-11)|Colorectal(24;9.75e-06)|STAD - Stomach adenocarcinoma(60;2.96e-05)|COAD - Colon adenocarcinoma(29;0.00103)|GBM - Glioblastoma multiforme(59;0.00462)|LUSC - Lung squamous cell carcinoma(40;0.0391)|READ - Rectum adenocarcinoma(43;0.0487)		AGCCTCCAGTCGTGAGTAGCA	0.483000													14	53					0	0	1	0	0
IRF2	3660	broad.mit.edu	37	4	185340682	185340682	+	Missense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr4:185340682C>G	uc003iwf.3	-	3	328	c.128G>C	c.(127-129)AGA>ACA	p.R43T		NM_002199	NP_002190	P14316	IRF2_HUMAN	interferon regulatory factor 2	43	IRF tryptophan pentad repeat.				blood coagulation|cell proliferation|interferon-gamma-mediated signaling pathway|negative regulation of transcription from RNA polymerase II promoter|type I interferon-mediated signaling pathway	focal adhesion|nucleoplasm	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity			ovary(1)	1		all_lung(41;7.86e-14)|Lung NSC(41;1.87e-13)|Colorectal(36;0.00146)|Hepatocellular(41;0.00826)|Renal(120;0.00992)|Prostate(90;0.0115)|all_neural(102;0.0573)|all_hematologic(60;0.0592)		all cancers(43;3.94e-27)|Epithelial(43;5.3e-24)|OV - Ovarian serous cystadenocarcinoma(60;1.06e-10)|Colorectal(24;7.98e-07)|STAD - Stomach adenocarcinoma(60;3.95e-05)|GBM - Glioblastoma multiforme(59;8.3e-05)|COAD - Colon adenocarcinoma(29;0.000106)|BRCA - Breast invasive adenocarcinoma(30;0.000311)|LUSC - Lung squamous cell carcinoma(40;0.0128)|READ - Rectum adenocarcinoma(43;0.0419)		CCACCCATGTCTAGCCGCATG	0.428000													25	133					0	0	1	0	0
ZFP42	132625	broad.mit.edu	37	4	188923976	188923976	+	Silent	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr4:188923976G>A	uc003izg.1	+	3	260	c.15G>A	c.(13-15)CTG>CTA	p.L5L	ZFP42_uc003izh.1_Silent_p.L5L|ZFP42_uc003izi.1_Silent_p.L5L	NM_174900	NP_777560	Q96MM3	ZFP42_HUMAN	zinc finger protein 42	5					female gonad development|male gonad development|meiosis	cytoplasm|nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)|skin(1)	2		all_cancers(14;6.2e-52)|all_epithelial(14;7.36e-37)|all_lung(41;2.29e-15)|Lung NSC(41;6.7e-15)|Breast(6;1.53e-05)|Melanoma(20;3.01e-05)|Hepatocellular(41;0.00335)|all_hematologic(60;0.014)|Renal(120;0.0183)|Prostate(90;0.0421)|Colorectal(36;0.227)		OV - Ovarian serous cystadenocarcinoma(60;1.54e-11)|BRCA - Breast invasive adenocarcinoma(30;4.21e-06)|GBM - Glioblastoma multiforme(59;8.93e-05)|STAD - Stomach adenocarcinoma(60;0.000279)|LUSC - Lung squamous cell carcinoma(40;0.00902)|READ - Rectum adenocarcinoma(43;0.157)		GCCAGCAACTGAAGAAACGGG	0.542000													19	84					0	0	1	0	0
TRIML2	205860	broad.mit.edu	37	4	189026426	189026426	+	5'Flank	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr4:189026426C>T	uc003izl.2	-						TRIML2_uc011cle.1_Missense_Mutation_p.D33N|TRIML2_uc011clf.1_Missense_Mutation_p.D33N	NM_173553	NP_775824	Q8N7C3	TRIMM_HUMAN	tripartite motif family-like 2								ligase activity			central_nervous_system(2)	2		all_cancers(14;3.11e-44)|all_epithelial(14;7.86e-31)|all_lung(41;4.3e-13)|Lung NSC(41;9.69e-13)|Melanoma(20;7.86e-05)|Breast(6;0.000148)|all_hematologic(60;0.0202)|Hepatocellular(41;0.0218)|Renal(120;0.0376)|Prostate(90;0.0513)		OV - Ovarian serous cystadenocarcinoma(60;1.79e-11)|BRCA - Breast invasive adenocarcinoma(30;4.52e-06)|GBM - Glioblastoma multiforme(59;1.62e-05)|STAD - Stomach adenocarcinoma(60;0.000279)|LUSC - Lung squamous cell carcinoma(40;0.0091)|READ - Rectum adenocarcinoma(43;0.163)		GTGATTTGGTCAACATCACAG	0.483000													39	130					0	0	1	0	0
PLEKHG4B	153478	broad.mit.edu	37	5	143604	143605	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr5:143604_143605CC>TT	uc003jak.2	+	3	779_780	c.729_730CC>TT	c.(727-732)TTCCAT>TTTTAT	p.H244Y		NM_052909	NP_443141	Q96PX9	PKH4B_HUMAN	pleckstrin homology domain containing, family G	244					regulation of Rho protein signal transduction	intracellular	Rho guanyl-nucleotide exchange factor activity			skin(2)	2			all cancers(22;0.0253)|Lung(60;0.113)	Kidney(1;0.119)		TGCTGTACTTCCATAGCATCCC	0.663000													17	62					0	0	1	0	0
EXOC3	11336	broad.mit.edu	37	5	446437	446437	+	Silent	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr5:446437G>A	uc003jba.2	+	2	245	c.117G>A	c.(115-117)AAG>AAA	p.K39K		NM_007277	NP_009208	O60645	EXOC3_HUMAN	Sec6 protein	50	Potential.				exocytosis|protein transport						0		Ovarian(839;0.0563)	Epithelial(17;0.000529)|OV - Ovarian serous cystadenocarcinoma(19;0.00153)|all cancers(22;0.00186)|Lung(60;0.0863)			AAGCGCGGAAGAAGGCCTCCG	0.597000													9	29					0	0	1	0	0
KIAA0947	23379	broad.mit.edu	37	5	5457444	5457444	+	Splice_Site	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr5:5457444G>C	uc003jdm.3	+	12	914	c.692_splice	c.e12-1	p.E231_splice		NM_015325	NP_056140	Q9Y2F5	K0947_HUMAN	hypothetical protein LOC23379											ovary(1)|central_nervous_system(1)	2						CCCCCACATAGAAAAACCTGC	0.418000													7	28					0	0	1	0	0
ADCY2	108	broad.mit.edu	37	5	7802390	7802390	+	Silent	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr5:7802390C>T	uc003jdz.1	+	21	2755	c.2688C>T	c.(2686-2688)TTC>TTT	p.F896F	ADCY2_uc011cmo.1_Silent_p.F716F|ADCY2_uc010itm.1_Silent_p.F92F	NM_020546	NP_065433	Q08462	ADCY2_HUMAN	adenylate cyclase 2	896	Cytoplasmic (Potential).				activation of adenylate cyclase activity by G-protein signaling pathway|activation of phospholipase C activity|activation of protein kinase A activity|cellular response to glucagon stimulus|energy reserve metabolic process|inhibition of adenylate cyclase activity by G-protein signaling pathway|nerve growth factor receptor signaling pathway|synaptic transmission|transmembrane transport|water transport	cytoplasm|dendrite|integral to membrane|plasma membrane	ATP binding|metal ion binding			ovary(5)|pancreas(1)|skin(1)	7						TTCCGGATTTCAAAGAATTTT	0.478000													11	44					0	0	1	0	0
TAS2R1	50834	broad.mit.edu	37	5	9629544	9629544	+	Missense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr5:9629544G>C	uc003jem.1	-	1	920	c.601C>G	c.(601-603)CTG>GTG	p.L201V		NM_019599	NP_062545	Q9NYW7	TA2R1_HUMAN	taste receptor T2R1	201	Cytoplasmic (Potential).				chemosensory behavior|sensory perception of taste	integral to membrane	taste receptor activity			ovary(3)	3						TGCCTCCCCAGAGAGAAAATC	0.493000													3	63					0	0	1	0	0
DNAH5	1767	broad.mit.edu	37	5	13830290	13830290	+	Missense_Mutation	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr5:13830290C>T	uc003jfd.2	-	37	6136	c.6094G>A	c.(6094-6096)GAT>AAT	p.D2032N		NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	2032	AAA 1 (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					TTAAATTCATCAAAACAACCC	0.343000									Kartagener_syndrome				13	55					0	0	1	0	0
DNAH5	1767	broad.mit.edu	37	5	13916485	13916485	+	Missense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr5:13916485G>C	uc003jfd.2	-	9	1211	c.1169C>G	c.(1168-1170)TCT>TGT	p.S390C	DNAH5_uc003jfe.1_RNA	NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	390	Stem (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					GATCTTCTCAGAGGTATTATA	0.308000									Kartagener_syndrome				11	75					0	0	1	0	0
MYO10	4651	broad.mit.edu	37	5	16701893	16701893	+	Missense_Mutation	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr5:16701893C>T	uc003jft.3	-	25	3079	c.2611G>A	c.(2611-2613)GAA>AAA	p.E871K	MYO10_uc011cnc.1_5'Flank|MYO10_uc011cnd.1_Missense_Mutation_p.E228K|MYO10_uc011cne.1_Missense_Mutation_p.E228K|MYO10_uc010itx.2_Missense_Mutation_p.E494K	NM_012334	NP_036466	Q9HD67	MYO10_HUMAN	myosin X	871	Potential.				axon guidance|signal transduction	myosin complex	actin binding|ATP binding|motor activity			ovary(2)|pancreas(1)	3						AGTTCAGCTTCCTTCTGGCTC	0.488000													22	56					0	0	1	0	0
PDZD2	23037	broad.mit.edu	37	5	32091059	32091059	+	Nonsense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr5:32091059C>G	uc003jhl.2	+	20	7893	c.7505C>G	c.(7504-7506)TCA>TGA	p.S2502*	PDZD2_uc003jhm.2_Nonsense_Mutation_p.S2502*	NM_178140	NP_835260	O15018	PDZD2_HUMAN	PDZ domain containing 2	2502					cell adhesion	cell-cell junction|endoplasmic reticulum|extracellular region|nucleus				central_nervous_system(4)|ovary(2)|skin(2)|large_intestine(1)	9						GAGGATTACTCAGCAGGGCCG	0.637000													38	110					0	0	1	0	0
C1QTNF3	114899	broad.mit.edu	37	5	34043319	34043319	+	Splice_Site	SNP	G	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr5:34043319G>T	uc003jin.2	-	1	1	c.-86_splice	c.e1-1		C1QTNF3_uc003jio.2_Splice_Site	NM_030945	NP_112207	Q9BXJ4	C1QT3_HUMAN	C1q and tumor necrosis factor related protein 3							collagen					0	all_lung(31;0.0207)					GACTGGAGCTGAGAGCTGCAG	0.562000													6	22					0.0215528	0.021668	1	1	0
EGFLAM	133584	broad.mit.edu	37	5	38407968	38407968	+	Missense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr5:38407968G>C	uc003jlc.1	+	9	1533	c.1209G>C	c.(1207-1209)AAG>AAC	p.K403N	EGFLAM_uc003jlb.1_Missense_Mutation_p.K403N|EGFLAM_uc003jle.1_Missense_Mutation_p.K169N|EGFLAM_uc003jlf.1_Intron	NM_152403	NP_689616	Q63HQ2	EGFLA_HUMAN	EGF-like, fibronectin type III and laminin G	403	Laminin G-like 1.					cell junction|proteinaceous extracellular matrix|synapse				pancreas(3)|skin(3)|ovary(1)	7	all_lung(31;0.000385)					AACCTCTGAAGAATTCTTATC	0.363000													6	91					0	0	1	0	0
RICTOR	253260	broad.mit.edu	37	5	38957801	38957801	+	Missense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr5:38957801G>C	uc003jlp.2	-	25	2476	c.2452C>G	c.(2452-2454)CTG>GTG	p.L818V	RICTOR_uc003jlo.2_Missense_Mutation_p.L818V|RICTOR_uc010ivf.2_Missense_Mutation_p.L533V	NM_152756	NP_689969	Q6R327	RICTR_HUMAN	rapamycin-insensitive companion of mTOR	818					actin cytoskeleton reorganization|embryo development|nerve growth factor receptor signaling pathway|phosphatidylinositol-mediated signaling|positive regulation of TOR signaling cascade|regulation of protein kinase B signaling cascade|T cell costimulation	cytosol|TORC2 complex	protein binding			ovary(3)|lung(3)|skin(2)|kidney(1)|central_nervous_system(1)	10	all_lung(31;0.000396)					CTTTCATTCAGATAGGAAAAT	0.303000													25	90					0	0	1	0	0
HMGCS1	3157	broad.mit.edu	37	5	43294235	43294235	+	Missense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr5:43294235C>G	uc003jnr.3	-	8	1313	c.1106G>C	c.(1105-1107)AGA>ACA	p.R369T	HMGCS1_uc003jnp.3_Missense_Mutation_p.R50T|HMGCS1_uc003jnq.3_Missense_Mutation_p.R369T	NM_001098272	NP_001091742	Q01581	HMCS1_HUMAN	hydroxymethylglutaryl-CoA synthase 1	369					cholesterol biosynthetic process|isoprenoid biosynthetic process	cytosol|soluble fraction	hydroxymethylglutaryl-CoA synthase activity				0						CACTCCAATTCTCTTCCCTGC	0.423000													18	42					0	0	1	0	0
PELO	53918	broad.mit.edu	37	5	52097658	52097658	+	Missense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr5:52097658G>C	uc003jos.2	+	3	2127	c.1142G>C	c.(1141-1143)AGT>ACT	p.S381T	ITGA1_uc003jov.2_Intron|ITGA1_uc003jou.2_Intron|PELO_uc003jot.1_Intron	NM_015946	NP_057030	Q9BRX2	PELO_HUMAN	pelota homolog	381					cell cycle|cell division|translation	cytoplasm|nucleus	endonuclease activity|metal ion binding|protein binding				0		Lung NSC(810;4.94e-05)|Breast(144;0.0848)				GGTGATTCCAGTTCTGAAGAG	0.448000													13	35					0	0	1	0	0
DHX29	54505	broad.mit.edu	37	5	54570469	54570469	+	Nonsense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr5:54570469G>C	uc003jpx.2	-	16	2783	c.2663C>G	c.(2662-2664)TCA>TGA	p.S888*	DHX29_uc010ivw.2_RNA	NM_019030	NP_061903	Q7Z478	DHX29_HUMAN	DEAH (Asp-Glu-Ala-His) box polypeptide 29	888	Helicase C-terminal.						ATP binding|ATP-dependent helicase activity|translation initiation factor activity			ovary(2)|central_nervous_system(1)|skin(1)	4		Lung NSC(810;4.08e-05)|Breast(144;0.0544)|Prostate(74;0.183)				TCTATCATTTGATAGAAGATC	0.303000													14	25					0	0	1	0	0
HTR1A	3350	broad.mit.edu	37	5	63256875	63256875	+	Silent	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr5:63256875G>A	uc011cqt.1	-	1	672	c.672C>T	c.(670-672)TTC>TTT	p.F224F		NM_000524	NP_000515	P08908	5HT1A_HUMAN	5-hydroxytryptamine (serotonin) receptor 1A	224	Cytoplasmic (By similarity).				behavior|positive regulation of cell proliferation	integral to plasma membrane	serotonin receptor activity			ovary(2)|pancreas(2)	4		Lung NSC(810;3.55e-06)|Prostate(74;0.0352)|Ovarian(174;0.0545)|Breast(144;0.0575)|Colorectal(97;0.234)		Lung(70;0.105)	Alprenolol(DB00866)|Aripiprazole(DB01238)|Buspirone(DB00490)|Clozapine(DB00363)|Eletriptan(DB00216)|Ergoloid mesylate(DB01049)|Fluvoxamine(DB00176)|Lisuride(DB00589)|Methysergide(DB00247)|Mirtazapine(DB00370)|Pindolol(DB00960)|Propranolol(DB00571)|Quetiapine(DB01224)|Sertraline(DB01104)|Tegaserod(DB01079)|Trazodone(DB00656)|Venlafaxine(DB00285)|Ziprasidone(DB00246)	TGCGGATGCGGAAGCGCGCAG	0.567000													38	149					0	0	1	0	0
HTR1A	3350	broad.mit.edu	37	5	63257044	63257044	+	Missense_Mutation	SNP	G	A	A	rs146873107		TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr5:63257044G>A	uc011cqt.1	-	1	503	c.503C>T	c.(502-504)TCT>TTT	p.S168F		NM_000524	NP_000515	P08908	5HT1A_HUMAN	5-hydroxytryptamine (serotonin) receptor 1A	168	Helical; Name=4; (By similarity).				behavior|positive regulation of cell proliferation	integral to plasma membrane	serotonin receptor activity			ovary(2)|pancreas(2)	4		Lung NSC(810;3.55e-06)|Prostate(74;0.0352)|Ovarian(174;0.0545)|Breast(144;0.0575)|Colorectal(97;0.234)		Lung(70;0.105)	Alprenolol(DB00866)|Aripiprazole(DB01238)|Buspirone(DB00490)|Clozapine(DB00363)|Eletriptan(DB00216)|Ergoloid mesylate(DB01049)|Fluvoxamine(DB00176)|Lisuride(DB00589)|Methysergide(DB00247)|Mirtazapine(DB00370)|Pindolol(DB00960)|Propranolol(DB00571)|Quetiapine(DB01224)|Sertraline(DB01104)|Tegaserod(DB01079)|Trazodone(DB00656)|Venlafaxine(DB00285)|Ziprasidone(DB00246)	GGGCGGGATAGAGATGAGGAA	0.602000													40	104					0	0	1	0	0
ADAMTS6	11174	broad.mit.edu	37	5	64468767	64468767	+	Missense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr5:64468767C>G	uc003jtp.2	-	23	3793	c.2979G>C	c.(2977-2979)AAG>AAC	p.K993N	ADAMTS6_uc003jto.2_RNA|ADAMTS6_uc003jtq.2_RNA	NM_197941	NP_922932	Q9UKP5	ATS6_HUMAN	ADAM metallopeptidase with thrombospondin type 1	993	TSP type-1 4.				proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding				0		Lung NSC(167;2.44e-06)|Prostate(74;0.014)|Ovarian(174;0.0549)|Breast(144;0.111)|Colorectal(97;0.235)		Lung(70;0.00942)		CTGGGAATGTCTTAGAAAGGT	0.498000													3	130					0	0	1	0	0
PPWD1	23398	broad.mit.edu	37	5	64867770	64867770	+	Missense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr5:64867770G>C	uc003jtv.3	+	5	633	c.626G>C	c.(625-627)CGA>CCA	p.R209P	PPWD1_uc011cqv.1_Missense_Mutation_p.R179P|PPWD1_uc011cqw.1_Missense_Mutation_p.R53P	NM_015342	NP_056157	Q96BP3	PPWD1_HUMAN	peptidylprolyl isomerase domain and WD repeat	209					protein folding	catalytic step 2 spliceosome	peptidyl-prolyl cis-trans isomerase activity			ovary(1)	1		Lung NSC(167;7.21e-05)|Prostate(74;0.0174)|Ovarian(174;0.186)		Lung(70;0.00451)		TATGATGGCCGAGGAGATAAC	0.423000													38	114					0	0	1	0	0
MAST4	375449	broad.mit.edu	37	5	66438035	66438035	+	Missense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr5:66438035G>C	uc003jut.1	+	19	2088	c.2020G>C	c.(2020-2022)GAA>CAA	p.E674Q	MAST4_uc003juu.1_Missense_Mutation_p.E684Q|MAST4_uc011cra.1_Missense_Mutation_p.E657Q|MAST4_uc003juv.2_Missense_Mutation_p.E669Q|MAST4_uc003juw.2_Missense_Mutation_p.E669Q	NM_015183	NP_055998	O15021	MAST4_HUMAN	microtubule associated serine/threonine kinase	866	AGC-kinase C-terminal.					cytoplasm	ATP binding|magnesium ion binding|protein serine/threonine kinase activity			lung(6)|ovary(2)|kidney(2)|breast(2)|central_nervous_system(1)	13		Lung NSC(167;8.56e-06)|Prostate(74;0.00637)|Ovarian(174;0.0563)|Breast(144;0.0586)|Colorectal(97;0.245)		Lung(70;0.011)		TCCCCAACTGGAATCTGAGGA	0.378000													27	102					0	0	1	0	0
PIK3R1	5295	broad.mit.edu	37	5	67591082	67591082	+	Missense_Mutation	SNP	A	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr5:67591082A>G	uc003jva.2	+	13	2235	c.1675A>G	c.(1675-1677)ATT>GTT	p.I559V	PIK3R1_uc003jvb.2_Missense_Mutation_p.I559V|PIK3R1_uc003jvc.2_Missense_Mutation_p.I259V|PIK3R1_uc003jvd.2_Missense_Mutation_p.I289V|PIK3R1_uc003jve.2_Missense_Mutation_p.I238V|PIK3R1_uc011crb.1_Missense_Mutation_p.I229V	NM_181523	NP_852664	P27986	P85A_HUMAN	phosphoinositide-3-kinase, regulatory subunit 1	559					epidermal growth factor receptor signaling pathway|fibroblast growth factor receptor signaling pathway|growth hormone receptor signaling pathway|insulin receptor signaling pathway|insulin-like growth factor receptor signaling pathway|interspecies interaction between organisms|leukocyte migration|nerve growth factor receptor signaling pathway|phosphatidylinositol 3-kinase cascade|phosphatidylinositol phosphorylation|phosphatidylinositol-mediated signaling|platelet activation|positive regulation of establishment of protein localization in plasma membrane|positive regulation of glucose import|T cell costimulation|T cell receptor signaling pathway	1-phosphatidylinositol-4-phosphate 3-kinase, class IA complex	1-phosphatidylinositol binding|ErbB-3 class receptor binding|insulin binding|insulin receptor binding|insulin receptor substrate binding|insulin-like growth factor receptor binding|phosphatidylinositol 3-kinase regulator activity|protein phosphatase binding	p.R557_K561>Q(1)|p.?(1)		endometrium(34)|central_nervous_system(27)|large_intestine(20)|breast(7)|ovary(5)|haematopoietic_and_lymphoid_tissue(3)|lung(2)|urinary_tract(1)|skin(1)|pancreas(1)	101		Lung NSC(167;1.99e-05)|Prostate(74;0.00308)|Ovarian(174;0.00473)|Colorectal(97;0.0176)		OV - Ovarian serous cystadenocarcinoma(47;3.76e-51)|Lung(70;0.0211)	Isoproterenol(DB01064)	GTATCGAGAAATTGACAAACG	0.368000			Mis|F|O		gliobastoma|ovarian|colorectal					TCGA GBM(4;<1E-08)			26	83					0	0	1	0	0
CCDC125	202243	broad.mit.edu	37	5	68595899	68595899	+	Missense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr5:68595899C>G	uc003jvv.1	-	7	799	c.756G>C	c.(754-756)AAG>AAC	p.K252N	CCDC125_uc003jvx.1_Missense_Mutation_p.K251N|CCDC125_uc003jvy.1_RNA|CCDC125_uc003jvw.2_Missense_Mutation_p.K127N	NM_176816	NP_789786	Q86Z20	CC125_HUMAN	coiled-coil domain containing 125	252						cytoplasm					0		Lung NSC(167;7.26e-05)|Prostate(74;0.0143)|Ovarian(174;0.0448)|Breast(144;0.198)		OV - Ovarian serous cystadenocarcinoma(47;2.2e-56)|Epithelial(20;2.31e-52)|all cancers(19;5.85e-48)|Lung(70;0.0183)		CCTGAGCCATCTTCTGCTGTT	0.443000													74	267					0	0	1	0	0
BDP1	55814	broad.mit.edu	37	5	70837407	70837407	+	Missense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr5:70837407C>G	uc003kbp.1	+	29	6412	c.6149C>G	c.(6148-6150)TCT>TGT	p.S2050C	BDP1_uc003kbo.2_Missense_Mutation_p.S2050C|BDP1_uc003kbq.1_RNA|BDP1_uc003kbr.1_RNA	NM_018429	NP_060899	A6H8Y1	BDP1_HUMAN	transcription factor-like nuclear regulator	2050					regulation of transcription, DNA-dependent|transcription from RNA polymerase III promoter	nucleoplasm	DNA binding			skin(2)	2		Lung NSC(167;0.000422)|Prostate(74;0.00815)|Ovarian(174;0.0176)|Breast(144;0.198)		OV - Ovarian serous cystadenocarcinoma(47;5.28e-56)|Epithelial(20;2.31e-50)		ATTACTACATCTCCTGCATCA	0.348000													34	114					0	0	1	0	0
MAP1B	4131	broad.mit.edu	37	5	71494088	71494088	+	Nonsense_Mutation	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr5:71494088C>T	uc003kbw.3	+	5	5147	c.4906C>T	c.(4906-4908)CAA>TAA	p.Q1636*	MAP1B_uc010iyw.1_Nonsense_Mutation_p.Q1653*|MAP1B_uc010iyx.1_Nonsense_Mutation_p.Q1510*|MAP1B_uc010iyy.1_Nonsense_Mutation_p.Q1510*	NM_005909	NP_005900	P46821	MAP1B_HUMAN	microtubule-associated protein 1B	1636						microtubule|microtubule associated complex	structural molecule activity			large_intestine(2)|ovary(1)|central_nervous_system(1)|pancreas(1)	5		Lung NSC(167;0.00202)|Ovarian(174;0.0175)|Prostate(461;0.142)|Breast(144;0.198)		OV - Ovarian serous cystadenocarcinoma(47;7.99e-54)		GACACCCGTTCAAGATCACAG	0.448000													23	105					0	0	1	0	0
ZNF366	167465	broad.mit.edu	37	5	71752240	71752240	+	Missense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr5:71752240G>C	uc003kce.1	-	3	1701	c.1515C>G	c.(1513-1515)TTC>TTG	p.F505L		NM_152625	NP_689838	Q8N895	ZN366_HUMAN	zinc finger protein 366	505	C2H2-type 10.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			central_nervous_system(1)|skin(1)	2		Lung NSC(167;0.0247)|Ovarian(174;0.0908)|Prostate(461;0.155)		OV - Ovarian serous cystadenocarcinoma(47;2.51e-53)		CCTTGCATTTGAAAGGCTTCA	0.542000													5	328					0	0	1	0	0
FCHO2	115548	broad.mit.edu	37	5	72311459	72311459	+	Missense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr5:72311459C>G	uc003kcl.2	+	7	723	c.607C>G	c.(607-609)CAA>GAA	p.Q203E	FCHO2_uc011csl.1_Intron|FCHO2_uc011csk.1_Missense_Mutation_p.Q203E|FCHO2_uc011csm.1_Missense_Mutation_p.Q9E	NM_138782	NP_620137	Q0JRZ9	FCHO2_HUMAN	FCH domain only 2 isoform a	203										ovary(1)	1		Lung NSC(167;0.0465)|Ovarian(174;0.0908)|Prostate(461;0.165)		OV - Ovarian serous cystadenocarcinoma(47;4.6e-53)		CCAGAAATTTCAAGATATTGA	0.294000													13	35					0	0	1	0	0
SV2C	22987	broad.mit.edu	37	5	75581692	75581692	+	Silent	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr5:75581692C>T	uc003kei.1	+	6	1268	c.1134C>T	c.(1132-1134)TTC>TTT	p.F378F		NM_014979	NP_055794	Q496J9	SV2C_HUMAN	synaptic vesicle glycoprotein 2C	378	Cytoplasmic (Potential).				neurotransmitter transport	cell junction|integral to membrane|synaptic vesicle membrane	transmembrane transporter activity			skin(1)	1		all_lung(232;0.007)|Lung NSC(167;0.0148)|Ovarian(174;0.0798)|Prostate(461;0.184)		OV - Ovarian serous cystadenocarcinoma(47;1.16e-50)|all cancers(79;7.25e-40)		AGAAGGTCTTCACGGTGAGTC	0.313000													15	62					0	0	1	0	0
IQGAP2	10788	broad.mit.edu	37	5	75866443	75866443	+	Silent	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr5:75866443C>G	uc003kek.2	+	4	564	c.342C>G	c.(340-342)GTC>GTG	p.V114V		NM_006633	NP_006624	Q13576	IQGA2_HUMAN	IQ motif containing GTPase activating protein 2	114	CH.				small GTPase mediated signal transduction	actin cytoskeleton	actin binding|calmodulin binding|GTPase inhibitor activity|Ras GTPase activator activity			ovary(6)|central_nervous_system(1)	7		all_lung(232;0.000514)|Lung NSC(167;0.00135)|Prostate(461;0.00838)|Ovarian(174;0.0149)		all cancers(79;1.38e-36)		ATAATACCGTCCAGTGGTTAA	0.453000													14	69					0	0	1	0	0
CMYA5	202333	broad.mit.edu	37	5	79027909	79027909	+	Silent	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr5:79027909C>G	uc003kgc.2	+	2	3393	c.3321C>G	c.(3319-3321)CTC>CTG	p.L1107L		NM_153610	NP_705838	Q8N3K9	CMYA5_HUMAN	cardiomyopathy associated 5	1107						perinuclear region of cytoplasm				ovary(6)|pancreas(2)|lung(1)	9		Lung NSC(167;0.00296)|all_lung(232;0.00327)|Ovarian(174;0.0262)		OV - Ovarian serous cystadenocarcinoma(54;9.85e-46)|Epithelial(54;3.38e-40)|all cancers(79;3.43e-35)		CTGAATATCTCATTTTGGCAC	0.413000													13	68					0	0	1	0	0
ZFYVE16	9765	broad.mit.edu	37	5	79747465	79747465	+	Missense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr5:79747465G>C	uc003kgr.3	+	11	3846	c.3544G>C	c.(3544-3546)GAG>CAG	p.E1182Q	ZFYVE16_uc003kgp.2_Missense_Mutation_p.E1182Q|ZFYVE16_uc003kgq.3_Missense_Mutation_p.E1182Q|ZFYVE16_uc003kgs.3_Missense_Mutation_p.E1182Q|ZFYVE16_uc003kgt.3_Missense_Mutation_p.E270Q|ZFYVE16_uc003kgu.3_5'Flank	NM_001105251	NP_001098721	Q7Z3T8	ZFY16_HUMAN	zinc finger, FYVE domain containing 16	1182					BMP signaling pathway|endosome transport|protein targeting to lysosome|regulation of endocytosis|vesicle organization	early endosome membrane	1-phosphatidylinositol binding|metal ion binding|phosphatidylinositol-3,4,5-trisphosphate binding|protein binding|protein transporter activity				0		Lung NSC(167;0.00428)|all_lung(232;0.00455)|Ovarian(174;0.0261)		OV - Ovarian serous cystadenocarcinoma(54;1.6e-46)|Epithelial(54;2.02e-41)|all cancers(79;5.05e-36)		CCAGAAGCTTGAGATTCCCTG	0.348000													29	132					0	0	1	0	0
ACOT12	134526	broad.mit.edu	37	5	80626308	80626308	+	Missense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr5:80626308G>C	uc003khl.3	-	15	1628	c.1573C>G	c.(1573-1575)CTT>GTT	p.L525V	RNU5E_uc011cto.1_Intron	NM_130767	NP_570123	Q8WYK0	ACO12_HUMAN	acyl-CoA thioesterase 12	525	START.				acyl-CoA metabolic process|fatty acid metabolic process	cytosol	acetyl-CoA hydrolase activity|carboxylesterase activity			ovary(1)|kidney(1)	2		Lung NSC(167;0.0176)|all_lung(232;0.0205)|Ovarian(174;0.135)		OV - Ovarian serous cystadenocarcinoma(54;1.37e-45)|Epithelial(54;1.25e-39)|all cancers(79;5.01e-34)		CAGCCACCAAGATTTCCAGCA	0.363000													26	76					0	0	1	0	0
EDIL3	10085	broad.mit.edu	37	5	83360566	83360566	+	Missense_Mutation	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr5:83360566C>T	uc003kio.1	-	8	1324	c.905G>A	c.(904-906)CGA>CAA	p.R302Q	EDIL3_uc003kip.1_Missense_Mutation_p.R292Q|EDIL3_uc011ctt.1_Missense_Mutation_p.R79Q	NM_005711	NP_005702	O43854	EDIL3_HUMAN	EGF-like repeats and discoidin I-like	302	F5/8 type C 1.				cell adhesion|multicellular organismal development	extracellular region	calcium ion binding|integrin binding			skin(2)	2		Lung NSC(167;0.000121)|all_lung(232;0.000154)|Ovarian(174;0.0425)		OV - Ovarian serous cystadenocarcinoma(54;4.3e-40)|Epithelial(54;4.79e-32)|all cancers(79;1.54e-26)		GCAATGTCTTCGACAAACTTG	0.383000													11	74					0	0	1	0	0
GPR98	84059	broad.mit.edu	37	5	89940684	89940684	+	Missense_Mutation	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr5:89940684G>A	uc003kju.2	+	15	2992	c.2896G>A	c.(2896-2898)GAG>AAG	p.E966K	GPR98_uc003kjt.2_5'UTR	NM_032119	NP_115495	Q8WXG9	GPR98_HUMAN	G protein-coupled receptor 98 precursor	966	Extracellular (Potential).|Calx-beta 7.				cell communication|cell-cell adhesion|maintenance of organ identity|neuropeptide signaling pathway|photoreceptor cell maintenance	cell surface|cytoplasm|integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity			ovary(11)|central_nervous_system(3)|pancreas(2)	16		all_cancers(142;1.05e-09)|all_epithelial(76;1.81e-12)|all_lung(232;5.41e-06)|Lung NSC(167;1.72e-05)|Ovarian(174;0.00948)|Colorectal(57;0.133)|Breast(839;0.192)		OV - Ovarian serous cystadenocarcinoma(54;7.01e-30)|Epithelial(54;6.79e-25)|all cancers(79;1.88e-20)		CCTTCCAGATGAGGTAAATAT	0.294000													19	59					0	0	1	0	0
FAM81B	153643	broad.mit.edu	37	5	94764389	94764389	+	Missense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr5:94764389G>C	uc003kla.1	+	6	785	c.739G>C	c.(739-741)GAA>CAA	p.E247Q	FAM81B_uc010jbe.1_Missense_Mutation_p.E43Q	NM_152548	NP_689761	Q96LP2	FA81B_HUMAN	hypothetical protein LOC153643	247										ovary(1)|skin(1)	2		all_cancers(142;1.1e-06)|all_epithelial(76;1.48e-09)|all_lung(232;0.000696)|Lung NSC(167;0.000947)|Ovarian(225;0.00473)		all cancers(79;1.04e-16)		AGCCATTCAAGAATTCGTGCC	0.418000													6	173					0	0	1	0	0
WDR36	134430	broad.mit.edu	37	5	110446915	110446915	+	Missense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr5:110446915G>C	uc003kpd.2	+	15	1939	c.1822G>C	c.(1822-1824)GAC>CAC	p.D608H	WDR36_uc010jbu.2_RNA	NM_139281	NP_644810	Q8NI36	WDR36_HUMAN	WD repeat domain 36	608					response to stimulus|rRNA processing|visual perception	small-subunit processome				ovary(1)|skin(1)	2		all_cancers(142;2.72e-05)|all_epithelial(76;4.4e-07)|Prostate(80;0.00955)|Lung NSC(167;0.0418)|Ovarian(225;0.0443)|Colorectal(57;0.0465)|all_lung(232;0.0508)|Breast(839;0.244)		OV - Ovarian serous cystadenocarcinoma(64;1.39e-08)|Epithelial(69;1.82e-07)|all cancers(49;2.04e-05)|COAD - Colon adenocarcinoma(37;0.111)		TAGTGTTCTGGACATAGAAAC	0.368000													5	360					0	0	1	0	0
STARD4	134429	broad.mit.edu	37	5	110835787	110835787	+	Missense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr5:110835787C>G	uc003kph.1	-	6	499	c.415G>C	c.(415-417)GAT>CAT	p.D139H	STARD4_uc010jbw.1_Missense_Mutation_p.D41H|STARD4_uc010jbx.1_Missense_Mutation_p.D41H|STARD4_uc003kpi.1_RNA	NM_139164	NP_631903	Q96DR4	STAR4_HUMAN	StAR-related lipid transfer (START) domain	139	START.				lipid transport		lipid binding			ovary(1)	1		all_cancers(142;0.00259)|all_epithelial(76;8.32e-05)|Prostate(80;0.0115)|Colorectal(10;0.0959)|Ovarian(225;0.156)|all_lung(232;0.18)|Lung NSC(167;0.248)		OV - Ovarian serous cystadenocarcinoma(64;4.91e-09)|Epithelial(69;1.39e-08)|all cancers(49;2.34e-06)|COAD - Colon adenocarcinoma(37;0.049)|Colorectal(14;0.138)		CTCTTTTCATCCCAGTCAAGA	0.333000													17	73					0	0	1	0	0
SRP19	6728	broad.mit.edu	37	5	112200184	112200184	+	Missense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr5:112200184C>G	uc003kqc.2	+	3	229	c.148C>G	c.(148-150)CAA>GAA	p.Q50E	SRP19_uc003kqb.1_Missense_Mutation_p.Q50E|SRP19_uc011cvu.1_5'UTR|SRP19_uc011cvv.1_5'UTR	NM_003135	NP_003126	P09132	SRP19_HUMAN	signal recognition particle 19kDa	50					response to drug|SRP-dependent cotranslational protein targeting to membrane	cytosol|mitochondrion|nucleolus|signal recognition particle, endoplasmic reticulum targeting	7S RNA binding				0		all_cancers(142;0.00328)|all_epithelial(76;6.39e-05)|Prostate(80;0.00174)|Colorectal(10;0.00372)|Ovarian(225;0.156)		Epithelial(69;1.7e-09)|OV - Ovarian serous cystadenocarcinoma(64;1.17e-08)|all cancers(49;3.96e-07)|Colorectal(14;0.0056)|COAD - Colon adenocarcinoma(37;0.0104)		TACAGAGATTCAAGATGTATG	0.343000													29	110					0	0	1	0	0
TMED7-TICAM2	100302736	broad.mit.edu	37	5	114916797	114916797	+	Missense_Mutation	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr5:114916797C>T	uc003krd.2	-	4	1163	c.157G>A	c.(157-159)GAG>AAG	p.E53K	TMED7-TICAM2_uc003kre.2_Missense_Mutation_p.E222K|TICAM2_uc003krc.2_Missense_Mutation_p.E53K	NM_021649	NP_067681	Q86XR7	TCAM2_HUMAN	toll-like receptor adaptor molecule 2	53					I-kappaB kinase/NF-kappaB cascade|inflammatory response|innate immune response|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|positive regulation of I-kappaB kinase/NF-kappaB cascade|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 4 signaling pathway	Golgi apparatus|intrinsic to membrane|plasma membrane	protein binding|transmembrane receptor activity				0						GTTGGCCCCTCTGTTGTATTG	0.453000													5	428					0	0	1	0	0
AP3S1	1176	broad.mit.edu	37	5	115230837	115230837	+	Missense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr5:115230837G>C	uc003krl.2	+	4	443	c.327G>C	c.(325-327)TTG>TTC	p.L109F	AP3S1_uc003krk.2_Missense_Mutation_p.L87F|AP3S1_uc003krm.2_Missense_Mutation_p.L109F	NM_001284	NP_001275	Q92572	AP3S1_HUMAN	adaptor-related protein complex 3, sigma 1	109					insulin receptor signaling pathway|intracellular protein transport|vesicle-mediated transport	AP-type membrane coat adaptor complex|cytoplasmic vesicle membrane|Golgi apparatus|transport vesicle	protein binding|protein transporter activity				0		all_cancers(142;0.00377)|all_epithelial(76;0.000129)|Prostate(80;0.0132)|Ovarian(225;0.0776)|Lung NSC(810;0.245)		OV - Ovarian serous cystadenocarcinoma(64;1.08e-07)|Epithelial(69;1.11e-06)|all cancers(49;5.2e-05)		AGCTGGATTTGATTTTCCATG	0.269000													12	61					0	0	1	0	0
HSD17B4	3295	broad.mit.edu	37	5	118824910	118824910	+	Missense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr5:118824910G>C	uc003ksj.2	+	9	769	c.646G>C	c.(646-648)GAG>CAG	p.E216Q	HSD17B4_uc011cwg.1_Missense_Mutation_p.E192Q|HSD17B4_uc011cwh.1_Missense_Mutation_p.E198Q|HSD17B4_uc011cwi.1_Missense_Mutation_p.E241Q|HSD17B4_uc003ksk.3_Missense_Mutation_p.E69Q|HSD17B4_uc011cwj.1_Missense_Mutation_p.E69Q|HSD17B4_uc010jcn.1_5'UTR	NM_000414	NP_000405	P51659	DHB4_HUMAN	hydroxysteroid (17-beta) dehydrogenase 4	216	(3R)-hydroxyacyl-CoA dehydrogenase.				bile acid biosynthetic process|fatty acid beta-oxidation using acyl-CoA oxidase	peroxisomal matrix	3-hydroxyacyl-CoA dehydrogenase activity|3alpha,7alpha,12alpha-trihydroxy-5beta-cholest-24-enoyl-CoA hydratase activity|estradiol 17-beta-dehydrogenase activity|isomerase activity|long-chain-enoyl-CoA hydratase activity|protein binding|sterol binding|sterol transporter activity			ovary(1)|pancreas(1)	2		all_cancers(142;0.0206)|Prostate(80;0.0322)		OV - Ovarian serous cystadenocarcinoma(64;0.000247)|Epithelial(69;0.000849)|all cancers(49;0.0122)	NADH(DB00157)	CCTGAAGCCAGAGTATGTGGC	0.358000													38	111					0	0	1	0	0
CEP120	153241	broad.mit.edu	37	5	122734955	122734955	+	Missense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr5:122734955C>G	uc003ktk.2	-	6	569	c.487G>C	c.(487-489)GAC>CAC	p.D163H	CEP120_uc011cwq.1_5'UTR|CEP120_uc010jcz.1_Missense_Mutation_p.D137H	NM_153223	NP_694955	Q8N960	CE120_HUMAN	coiled-coil domain containing 100	163						centrosome				ovary(1)	1						TCCCTGGGGTCAAGTCCAGCC	0.398000													19	58					0	0	1	0	0
MEGF10	84466	broad.mit.edu	37	5	126746176	126746176	+	Missense_Mutation	SNP	C	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr5:126746176C>A	uc003kuh.3	+	10	1375	c.1013C>A	c.(1012-1014)GCA>GAA	p.A338E	MEGF10_uc010jdc.1_Missense_Mutation_p.A338E|MEGF10_uc010jdd.1_Missense_Mutation_p.A338E|MEGF10_uc003kui.3_Missense_Mutation_p.A338E	NM_032446	NP_115822	Q96KG7	MEG10_HUMAN	multiple EGF-like-domains 10 precursor	338	Extracellular (Potential).|EGF-like 6.|Necessary for interaction with AP2M1, self-assembly and formation of the irregular, mosaic-like adhesion pattern.				cell adhesion|phagocytosis	basolateral plasma membrane|cell projection|integral to membrane|phagocytic cup				ovary(4)	4		Prostate(80;0.165)	KIRC - Kidney renal clear cell carcinoma(527;0.0268)|Kidney(363;0.0488)	OV - Ovarian serous cystadenocarcinoma(64;0.0657)|Epithelial(69;0.123)		GTGAGCGGCGCATGCCTCTGT	0.597000													15	55					4.14922e-12	4.30097e-12	1	1	0
RAD50	10111	broad.mit.edu	37	5	131976426	131976426	+	Silent	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr5:131976426C>T	uc003kxi.2	+	24	4068	c.3681C>T	c.(3679-3681)ATC>ATT	p.I1227I	RAD50_uc003kxh.2_Silent_p.I1088I	NM_005732	NP_005723	Q92878	RAD50_HUMAN	RAD50 homolog isoform 1	1227	Ala/Asp-rich (DA-box).				DNA duplex unwinding|double-strand break repair via homologous recombination|positive regulation of kinase activity|positive regulation of protein autophosphorylation|reciprocal meiotic recombination|regulation of mitotic recombination|telomere maintenance via telomerase	Mre11 complex|nuclear chromosome, telomeric region|nucleoplasm	ATP binding|DNA binding|nuclease activity|protein binding, bridging|zinc ion binding			lung(2)|ovary(1)|skin(1)	4		all_cancers(142;0.0368)|Breast(839;0.198)	KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)			ACTGTGGCATCATTGCCTTGG	0.483000								Homologous_recombination					12	292					0	0	1	0	0
GDF9	2661	broad.mit.edu	37	5	132197395	132197395	+	Silent	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr5:132197395C>T	uc003kxz.1	-	2	1503	c.1251G>A	c.(1249-1251)CCG>CCA	p.P417P	GDF9_uc011cxj.1_Silent_p.P329P	NM_005260	NP_005251	O60383	GDF9_HUMAN	growth differentiation factor 9 precursor	417					female gamete generation|transforming growth factor beta receptor signaling pathway	extracellular space	cytokine activity|growth factor activity			skin(1)	1		all_cancers(142;0.105)|Breast(839;0.198)	KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)			GTACACATGACGGTCTTGGCA	0.483000													24	98					0	0	1	0	0
PHF15	23338	broad.mit.edu	37	5	133909370	133909370	+	Missense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr5:133909370G>C	uc003kzo.1	+	10	1649	c.1470G>C	c.(1468-1470)GAG>GAC	p.E490D	PHF15_uc011cxt.1_Missense_Mutation_p.E490D|PHF15_uc003kzk.2_Missense_Mutation_p.E506D|PHF15_uc003kzl.2_Missense_Mutation_p.E490D|PHF15_uc003kzm.2_Missense_Mutation_p.E490D|PHF15_uc003kzn.2_Intron|PHF15_uc003kzp.2_Missense_Mutation_p.E198D	NM_015288	NP_056103	Q9NQC1	JADE2_HUMAN	PHD finger protein 15	490					histone H3 acetylation|histone H4-K12 acetylation|histone H4-K5 acetylation|histone H4-K8 acetylation	histone acetyltransferase complex	zinc ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)			CAAGGCGCGAGAGAACGAAAC	0.512000													16	63					0	0	1	0	0
CAMLG	819	broad.mit.edu	37	5	134086562	134086562	+	Silent	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr5:134086562C>T	uc003kzt.2	+	4	918	c.813C>T	c.(811-813)TTC>TTT	p.F271F	CAMLG_uc003kzu.2_3'UTR	NM_001745	NP_001736	P49069	CAMLG_HUMAN	calcium modulating ligand	271	Cytoplasmic (Potential).				defense response	endoplasmic reticulum|integral to membrane					0			KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)		Cyclosporine(DB00091)	GCGAAGTCTTCACAGATCTCT	0.408000													20	65					0	0	1	0	0
DDX46	9879	broad.mit.edu	37	5	134153216	134153216	+	Missense_Mutation	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr5:134153216C>T	uc003kzw.2	+	20	2809	c.2641C>T	c.(2641-2643)CTT>TTT	p.L881F		NM_014829	NP_055644	Q7L014	DDX46_HUMAN	DEAD (Asp-Glu-Ala-Asp) box polypeptide 46	881					mRNA processing|RNA splicing	Cajal body|nuclear speck	ATP binding|ATP-dependent helicase activity|RNA binding			ovary(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.0101)|Kidney(363;0.0233)			CAATGCAATTCTTAGGGGTGG	0.443000													13	56					0	0	1	0	0
PITX1	5307	broad.mit.edu	37	5	134364558	134364558	+	Silent	SNP	G	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr5:134364558G>T	uc010jea.2	-	3	1249	c.856C>A	c.(856-858)CGG>AGG	p.R286R	PITX1_uc011cxy.1_Silent_p.R286R	NM_002653	NP_002644	P78337	PITX1_HUMAN	paired-like homeodomain transcription factor 1	286	Nuclear localization signal (Potential).|OAR.					nucleolus	sequence-specific DNA binding			ovary(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.0101)|Kidney(363;0.0233)	READ - Rectum adenocarcinoma(2;0.0607)		GACTTGAGCCGCAGGCTGGCT	0.637000													9	26					2.27111e-07	2.3216e-07	1	1	0
PITX1	5307	broad.mit.edu	37	5	134364608	134364608	+	Missense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr5:134364608G>C	uc010jea.2	-	3	1199	c.806C>G	c.(805-807)TCG>TGG	p.S269W	PITX1_uc011cxy.1_Missense_Mutation_p.S269W	NM_002653	NP_002644	P78337	PITX1_HUMAN	paired-like homeodomain transcription factor 1	269	Interacts with PIT-1 (By similarity).					nucleolus	sequence-specific DNA binding			ovary(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.0101)|Kidney(363;0.0233)	READ - Rectum adenocarcinoma(2;0.0607)		GCTGTAGGGCGAGGCGGGAGT	0.657000													14	42					0	0	1	0	0
PITX1	5307	broad.mit.edu	37	5	134364763	134364763	+	Silent	SNP	G	C	C	rs146204449	byFrequency	TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr5:134364763G>C	uc010jea.2	-	3	1044	c.651C>G	c.(649-651)CCC>CCG	p.P217P	PITX1_uc011cxy.1_Silent_p.P217P	NM_002653	NP_002644	P78337	PITX1_HUMAN	paired-like homeodomain transcription factor 1	217	Interacts with PIT-1 (By similarity).					nucleolus	sequence-specific DNA binding			ovary(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.0101)|Kidney(363;0.0233)	READ - Rectum adenocarcinoma(2;0.0607)		AGATGGAGCTGGGTGCTGAGA	0.637000													40	99					0	0	1	0	0
MYOT	9499	broad.mit.edu	37	5	137219244	137219244	+	Missense_Mutation	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr5:137219244G>A	uc011cye.1	+	7	1005	c.988G>A	c.(988-990)GGA>AGA	p.G330R	MYOT_uc003lbv.2_Missense_Mutation_p.G330R|MYOT_uc011cyg.1_Missense_Mutation_p.G146R|MYOT_uc011cyh.1_Missense_Mutation_p.G215R	NM_001135940	NP_001129412	Q9UBF9	MYOTI_HUMAN	myotilin isoform b	330	Necessary for interaction with ACTA1.|Ig-like C2-type 1.|Necessary for interaction with FLNC.				muscle contraction	actin cytoskeleton|sarcolemma|sarcomere	actin binding|structural constituent of muscle			large_intestine(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.0101)|Kidney(363;0.0109)			GAATAGAGCAGGAGAAGCCAC	0.428000													15	77					0	0	1	0	0
KDM3B	51780	broad.mit.edu	37	5	137754897	137754897	+	Nonsense_Mutation	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr5:137754897C>T	uc003lcy.1	+	14	3891	c.3691C>T	c.(3691-3693)CAG>TAG	p.Q1231*	KDM3B_uc010jew.1_Nonsense_Mutation_p.Q887*|KDM3B_uc011cys.1_Nonsense_Mutation_p.Q263*	NM_016604	NP_057688	Q7LBC6	KDM3B_HUMAN	jumonji domain containing 1B	1231					chromatin modification|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	metal ion binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen			ovary(3)|upper_aerodigestive_tract(2)|lung(2)|kidney(2)|central_nervous_system(1)|skin(1)	11						TTTAGCAACTCAGAAGGCTAA	0.483000													15	53					0	0	1	0	0
CTNNA1	1495	broad.mit.edu	37	5	138145810	138145810	+	Nonsense_Mutation	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr5:138145810C>T	uc003ldh.2	+	4	480	c.385C>T	c.(385-387)CGA>TGA	p.R129*	CTNNA1_uc011cyx.1_Nonsense_Mutation_p.R26*|CTNNA1_uc011cyy.1_Nonsense_Mutation_p.R6*|CTNNA1_uc003ldi.2_Intron|CTNNA1_uc003ldj.2_Nonsense_Mutation_p.R129*	NM_001903	NP_001894	P35221	CTNA1_HUMAN	catenin, alpha 1	129	Interaction with JUP and CTNNB1.|Involved in homodimerization.			R -> P (in Ref. 3; AAA18949).	adherens junction organization|apical junction assembly|cell adhesion|cellular response to indole-3-methanol|muscle cell differentiation|positive regulation of muscle cell differentiation	actin cytoskeleton|catenin complex|cytosol	beta-catenin binding|cadherin binding|gamma-catenin binding|structural molecule activity|vinculin binding			breast(6)|ovary(2)|large_intestine(2)|kidney(1)	11			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00325)			TCGGGCAGCTCGAGCTTTGCT	0.473000													4	160					0	0	1	0	0
PSD2	84249	broad.mit.edu	37	5	139193876	139193876	+	Missense_Mutation	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr5:139193876C>T	uc003leu.1	+	4	1148	c.943C>T	c.(943-945)CAT>TAT	p.H315Y		NM_032289	NP_115665	Q9BQI7	PSD2_HUMAN	pleckstrin and Sec7 domain containing 2	315	SEC7.				regulation of ARF protein signal transduction	cytoplasm|integral to membrane	ARF guanyl-nucleotide exchange factor activity			ovary(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TGAAGCTGCTCATCGGCTGGC	0.647000													26	64					0	0	1	0	0
PCDHA6	56142	broad.mit.edu	37	5	140208780	140208780	+	Silent	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr5:140208780C>T	uc003lho.2	+	1	1131	c.1104C>T	c.(1102-1104)GTC>GTT	p.V368V	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Silent_p.V368V|PCDHA6_uc011dab.1_Silent_p.V368V	NM_018909	NP_061732	Q9UN73	PCDA6_HUMAN	protocadherin alpha 6 isoform 1 precursor	368	Cadherin 4.|Extracellular (Potential).				homophilic cell adhesion|nervous system development	extracellular region|integral to plasma membrane	calcium ion binding|protein binding			haematopoietic_and_lymphoid_tissue(1)|skin(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TTGGTACTGTCATCGCCCTAA	0.493000													46	173					0	0	1	0	0
PCDHA10	56139	broad.mit.edu	37	5	140236799	140236799	+	Missense_Mutation	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr5:140236799C>T	uc003lhx.2	+	1	1166	c.1166C>T	c.(1165-1167)ACG>ATG	p.T389M	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhs.2_Intron|PCDHA9_uc003lhu.2_Intron|PCDHA10_uc003lhw.2_Missense_Mutation_p.T389M|PCDHA10_uc011dad.1_Missense_Mutation_p.T389M	NM_018901	NP_061724	Q9Y5I2	PCDAA_HUMAN	protocadherin alpha 10 isoform 1 precursor	389	Cadherin 4.|Extracellular (Potential).				homophilic cell adhesion|nervous system development	extracellular region|integral to plasma membrane	calcium ion binding|protein binding			ovary(2)|skin(2)|breast(1)	5			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TGCTCTCTGACGCCTCACGTT	0.552000													47	130					0	0	1	0	0
PCDHB6	56130	broad.mit.edu	37	5	140530688	140530688	+	Missense_Mutation	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr5:140530688G>A	uc003lir.2	+	1	850	c.850G>A	c.(850-852)GAT>AAT	p.D284N	PCDHB6_uc011dah.1_Missense_Mutation_p.D148N	NM_018939	NP_061762	Q9Y5E3	PCDB6_HUMAN	protocadherin beta 6 precursor	284	Cadherin 3.|Extracellular (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to plasma membrane	calcium ion binding			skin(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			GTTTCAAGTCGATGACGTCAA	0.468000													20	81					0	0	1	0	0
PCDHB8	56128	broad.mit.edu	37	5	140558153	140558153	+	Missense_Mutation	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr5:140558153C>T	uc011dai.1	+	1	724	c.538C>T	c.(538-540)CGG>TGG	p.R180W	PCDHB16_uc003liv.2_5'Flank	NM_019120	NP_061993	Q9UN66	PCDB8_HUMAN	protocadherin beta 8 precursor	180	Cadherin 2.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			skin(4)	4			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			CTCCTATTTTCGGGTCCTCAC	0.493000													25	281					0	0	1	0	0
PCDHB8	56128	broad.mit.edu	37	5	140558368	140558368	+	Silent	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr5:140558368G>A	uc011dai.1	+	1	939	c.753G>A	c.(751-753)CAG>CAA	p.Q251Q	PCDHB16_uc003liv.2_5'Flank	NM_019120	NP_061993	Q9UN66	PCDB8_HUMAN	protocadherin beta 8 precursor	251	Cadherin 3.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			skin(4)	4			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			ATAGGGTGCAGATCTCTGAGG	0.488000													61	601					0	0	1	0	0
PCDHB11	56125	broad.mit.edu	37	5	140579307	140579307	+	5'Flank	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr5:140579307G>A	uc003liy.2	+						PCDHB11_uc011daj.1_5'UTR	NM_018931	NP_061754	Q9Y5F2	PCDBB_HUMAN	protocadherin beta 11 precursor						calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to plasma membrane	calcium ion binding			skin(3)|ovary(2)|upper_aerodigestive_tract(1)	6			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			GCGTTCCGCAGAGCTGAAGCC	0.473000													12	23					0	0	1	0	0
PCDHGA3	56112	broad.mit.edu	37	5	140723925	140723925	+	Silent	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr5:140723925C>T	uc003ljm.1	+	1	325	c.325C>T	c.(325-327)CTG>TTG	p.L109L	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGA3_uc011dap.1_Silent_p.L109L	NM_018916	NP_061739	Q9Y5H0	PCDG3_HUMAN	protocadherin gamma subfamily A, 3 isoform 1	109	Cadherin 1.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			breast(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			AATTAACATTCTGGTTGAGGA	0.403000													8	36					0	0	1	0	0
PCDHGA12	26025	broad.mit.edu	37	5	140811509	140811509	+	Missense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr5:140811509G>C	uc003lkt.1	+	1	1352	c.1183G>C	c.(1183-1185)GAA>CAA	p.E395Q	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGB3_uc003ljw.1_Intron|PCDHGA6_uc003ljy.1_Intron|PCDHGA7_uc003lka.1_Intron|PCDHGB4_uc003lkc.1_Intron|PCDHGA8_uc003lkd.1_Intron|PCDHGB5_uc003lkf.1_Intron|PCDHGA9_uc003lkh.1_Intron|PCDHGB6_uc003lkj.1_Intron|PCDHGA10_uc003lkl.1_Intron|PCDHGB7_uc003lkn.1_Intron|PCDHGA11_uc003lkp.1_Intron|PCDHGA11_uc003lkq.1_Intron|PCDHGA12_uc011dba.1_Missense_Mutation_p.E395Q	NM_003735	NP_003726	O60330	PCDGC_HUMAN	protocadherin gamma subfamily A, 12 isoform 1	395	Cadherin 4.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(2)|pancreas(1)|skin(1)	4			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CTTTAAATTAGAAAAATCTTA	0.413000													4	70					0	0	1	0	0
FCHSD1	89848	broad.mit.edu	37	5	141023934	141023934	+	Missense_Mutation	SNP	G	C	C	rs139206388	by1000genomes	TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr5:141023934G>C	uc003llk.2	-	17	1765	c.1714C>G	c.(1714-1716)CTC>GTC	p.L572V	FCHSD1_uc010jgg.2_Missense_Mutation_p.L255V|FCHSD1_uc003llj.2_RNA	NM_033449	NP_258260	Q86WN1	FCSD1_HUMAN	FCH and double SH3 domains 1	572	SH3 2.								FCHSD1/BRAF(2)	skin(2)|ovary(1)|central_nervous_system(1)	4			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			AGACGGATGAGTGCCCCCTCA	0.627000													15	48					0	0	1	0	0
RNF14	9604	broad.mit.edu	37	5	141359694	141359694	+	Missense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr5:141359694G>C	uc003lly.2	+	5	880	c.841G>C	c.(841-843)GAG>CAG	p.E281Q	RNF14_uc003llz.2_Missense_Mutation_p.E281Q|RNF14_uc003lma.2_Missense_Mutation_p.E281Q|RNF14_uc003lmb.2_Missense_Mutation_p.E155Q|RNF14_uc003lmc.2_Missense_Mutation_p.E281Q|RNF14_uc011dbg.1_Missense_Mutation_p.E105Q|RNF14_uc011dbh.1_Intron|RNF14_uc003lmd.2_Missense_Mutation_p.E281Q	NM_183399	NP_899646	Q9UBS8	RNF14_HUMAN	ring finger protein 14 isoform 1	281					androgen receptor signaling pathway|positive regulation of transcription, DNA-dependent|protein ubiquitination|regulation of androgen receptor signaling pathway|regulation of transcription from RNA polymerase II promoter|response to estradiol stimulus|transcription, DNA-dependent	cytoplasm|nucleus	androgen receptor binding|small conjugating protein ligase activity|transcription coactivator activity|zinc ion binding				0		all_hematologic(541;0.0536)|Ovarian(839;0.118)	KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)	GBM - Glioblastoma multiforme(465;0.0407)		CCAGGTCAAAGAGTTAGTGGA	0.507000													48	141					0	0	1	0	0
GM2A	2760	broad.mit.edu	37	5	150632828	150632828	+	Silent	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr5:150632828C>T	uc003ltr.3	+	1	216	c.51C>T	c.(49-51)CTC>CTT	p.L17L	GM2A_uc011dcs.1_RNA|GM2A_uc011dcr.1_Silent_p.L17L	NM_000405	NP_000396	P17900	SAP3_HUMAN	GM2 ganglioside activator precursor	17						lysosome|nucleolus	sphingolipid activator protein activity				0		Medulloblastoma(196;0.091)|all_hematologic(541;0.207)	KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			GCTTGCTTCTCGCGGCCCCTG	0.627000													29	90					0	0	1	0	0
FAT2	2196	broad.mit.edu	37	5	150892005	150892005	+	Missense_Mutation	SNP	G	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr5:150892005G>T	uc003lue.3	-	20	11639	c.11626C>A	c.(11626-11628)CTT>ATT	p.L3876I	GM2A_uc011dcs.1_Intron|FAT2_uc003lud.3_Intron	NM_001447	NP_001438	Q9NYQ8	FAT2_HUMAN	FAT tumor suppressor 2 precursor	3876	Extracellular (Potential).|Laminin G-like.				epithelial cell migration|homophilic cell adhesion	cell-cell adherens junction|integral to membrane|nucleus	calcium ion binding			ovary(4)|upper_aerodigestive_tract(1)|skin(1)	6		Medulloblastoma(196;0.0912)|all_hematologic(541;0.104)	KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			GGGACCACAAGGGAGGTGTTG	0.587000													43	155					9.39024e-22	9.82224e-22	1	1	0
FAT2	2196	broad.mit.edu	37	5	150897244	150897244	+	Silent	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr5:150897244C>T	uc003lue.3	-	19	11413	c.11400G>A	c.(11398-11400)CTG>CTA	p.L3800L	GM2A_uc011dcs.1_Intron|FAT2_uc003lud.3_Silent_p.L493L	NM_001447	NP_001438	Q9NYQ8	FAT2_HUMAN	FAT tumor suppressor 2 precursor	3800	Extracellular (Potential).|Laminin G-like.				epithelial cell migration|homophilic cell adhesion	cell-cell adherens junction|integral to membrane|nucleus	calcium ion binding			ovary(4)|upper_aerodigestive_tract(1)|skin(1)	6		Medulloblastoma(196;0.0912)|all_hematologic(541;0.104)	KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			GGAGTGTTTTCAGATAGAAAT	0.522000													15	41					0	0	1	0	0
FAT2	2196	broad.mit.edu	37	5	150897268	150897268	+	Silent	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr5:150897268C>T	uc003lue.3	-	19	11389	c.11376G>A	c.(11374-11376)CGG>CGA	p.R3792R	GM2A_uc011dcs.1_Intron|FAT2_uc003lud.3_Silent_p.R485R	NM_001447	NP_001438	Q9NYQ8	FAT2_HUMAN	FAT tumor suppressor 2 precursor	3792	Extracellular (Potential).|Laminin G-like.				epithelial cell migration|homophilic cell adhesion	cell-cell adherens junction|integral to membrane|nucleus	calcium ion binding			ovary(4)|upper_aerodigestive_tract(1)|skin(1)	6		Medulloblastoma(196;0.0912)|all_hematologic(541;0.104)	KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			TGTGCCAGTTCCGAGCCGCTG	0.522000													18	76					0	0	1	0	0
FAT2	2196	broad.mit.edu	37	5	150932740	150932740	+	Nonsense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr5:150932740G>C	uc003lue.3	-	5	4167	c.4154C>G	c.(4153-4155)TCA>TGA	p.S1385*	GM2A_uc011dcs.1_Intron	NM_001447	NP_001438	Q9NYQ8	FAT2_HUMAN	FAT tumor suppressor 2 precursor	1385	Extracellular (Potential).|Cadherin 12.				epithelial cell migration|homophilic cell adhesion	cell-cell adherens junction|integral to membrane|nucleus	calcium ion binding			ovary(4)|upper_aerodigestive_tract(1)|skin(1)	6		Medulloblastoma(196;0.0912)|all_hematologic(541;0.104)	KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			TGCCTCACCTGAGATGTTGAA	0.547000													38	115					0	0	1	0	0
FAT2	2196	broad.mit.edu	37	5	150947186	150947186	+	Missense_Mutation	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr5:150947186G>A	uc003lue.3	-	1	1320	c.1307C>T	c.(1306-1308)TCA>TTA	p.S436L	GM2A_uc011dcs.1_Intron|FAT2_uc010jhx.1_Missense_Mutation_p.S436L	NM_001447	NP_001438	Q9NYQ8	FAT2_HUMAN	FAT tumor suppressor 2 precursor	436	Extracellular (Potential).|Cadherin 3.				epithelial cell migration|homophilic cell adhesion	cell-cell adherens junction|integral to membrane|nucleus	calcium ion binding			ovary(4)|upper_aerodigestive_tract(1)|skin(1)	6		Medulloblastoma(196;0.0912)|all_hematologic(541;0.104)	KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			CTGGCCCGGTGAGGTTCTGAT	0.507000													29	147					0	0	1	0	0
HAVCR2	84868	broad.mit.edu	37	5	156522409	156522409	+	Missense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr5:156522409G>C	uc003lwk.1	-	5	728	c.584C>G	c.(583-585)TCT>TGT	p.S195C		NM_032782	NP_116171	Q8TDQ0	HAVR2_HUMAN	T cell immunoglobulin mucin 3 precursor	195	Extracellular (Potential).					integral to membrane					0	Renal(175;0.00212)	Medulloblastoma(196;0.0354)|all_neural(177;0.0999)	Kidney(164;0.000171)|KIRC - Kidney renal clear cell carcinoma(164;0.000785)			GGTTGCTCCAGAGTCCCGTAA	0.453000													27	77					0	0	1	0	0
HMMR	3161	broad.mit.edu	37	5	162902673	162902673	+	Silent	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr5:162902673G>A	uc003lzf.2	+	11	1442	c.1260G>A	c.(1258-1260)CTG>CTA	p.L420L	HMMR_uc003lzh.2_Silent_p.L421L|HMMR_uc003lzg.2_Silent_p.L405L|HMMR_uc011dem.1_Silent_p.L334L	NM_012484	NP_036616	O75330	HMMR_HUMAN	hyaluronan-mediated motility receptor isoform b	420						cell surface|cytoplasm	hyaluronic acid binding				0	Renal(175;0.000281)	Medulloblastoma(196;0.00853)|all_neural(177;0.0408)	Kidney(164;7.83e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)	all cancers(165;0.0296)|OV - Ovarian serous cystadenocarcinoma(192;0.0423)|Epithelial(171;0.0848)		AAGAAAAGCTGAAAGGGTTTG	0.343000													9	30					0	0	1	0	0
ODZ2	57451	broad.mit.edu	37	5	167489109	167489109	+	Missense_Mutation	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr5:167489109G>A	uc010jjd.2	+	7	1354	c.1354G>A	c.(1354-1356)GAA>AAA	p.E452K	ODZ2_uc003lzq.2_Missense_Mutation_p.E331K|ODZ2_uc003lzr.3_Missense_Mutation_p.E220K	NM_001122679	NP_001116151			odz, odd Oz/ten-m homolog 2											ovary(6)|central_nervous_system(4)	10	Renal(175;0.00124)|Lung NSC(126;0.136)|all_lung(126;0.242)	Medulloblastoma(196;0.0241)|all_neural(177;0.026)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)	all cancers(165;0.0444)|OV - Ovarian serous cystadenocarcinoma(192;0.0694)|Epithelial(171;0.124)		TGGTGAAGCAGAAGTTGGTCG	0.448000													16	30					0	0	1	0	0
ODZ2	57451	broad.mit.edu	37	5	167671458	167671458	+	Missense_Mutation	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr5:167671458G>A	uc010jjd.2	+	26	5527	c.5527G>A	c.(5527-5529)GAT>AAT	p.D1843N	ODZ2_uc003lzr.3_Missense_Mutation_p.D1613N|ODZ2_uc003lzt.3_Missense_Mutation_p.D1216N|ODZ2_uc010jje.2_Missense_Mutation_p.D1107N	NM_001122679	NP_001116151			odz, odd Oz/ten-m homolog 2											ovary(6)|central_nervous_system(4)	10	Renal(175;0.00124)|Lung NSC(126;0.136)|all_lung(126;0.242)	Medulloblastoma(196;0.0241)|all_neural(177;0.026)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)	all cancers(165;0.0444)|OV - Ovarian serous cystadenocarcinoma(192;0.0694)|Epithelial(171;0.124)		CATTGACTATGATCGAAATAT	0.502000													9	40					0	0	1	0	0
PANK3	79646	broad.mit.edu	37	5	167995799	167995799	+	Missense_Mutation	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr5:167995799C>T	uc003lzz.1	-	2	533	c.233G>A	c.(232-234)CGA>CAA	p.R78Q		NM_024594	NP_078870	Q9H999	PANK3_HUMAN	pantothenate kinase 3	78					coenzyme A biosynthetic process	cytoplasm|nucleus	ATP binding|pantothenate kinase activity			ovary(1)	1	Renal(175;0.000159)|Lung NSC(126;0.0441)|all_lung(126;0.0909)	Medulloblastoma(196;0.0208)|all_neural(177;0.0416)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)	all cancers(165;0.0989)|OV - Ovarian serous cystadenocarcinoma(192;0.147)|Epithelial(171;0.188)		GTTCCCTCTTCGGCCAAAAAG	0.413000													34	138					0	0	1	0	0
LCP2	3937	broad.mit.edu	37	5	169689718	169689718	+	Nonsense_Mutation	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr5:169689718G>A	uc003man.1	-	13	1054	c.847C>T	c.(847-849)CAA>TAA	p.Q283*	LCP2_uc011des.1_Nonsense_Mutation_p.Q78*|LCP2_uc011det.1_Nonsense_Mutation_p.Q112*|LCP2_uc010jjo.1_Nonsense_Mutation_p.Q90*	NM_005565	NP_005556	Q13094	LCP2_HUMAN	lymphocyte cytosolic protein 2	283					immune response|platelet activation|T cell receptor signaling pathway|transmembrane receptor protein tyrosine kinase signaling pathway	cytosol	protein binding			ovary(1)	1	Renal(175;0.000159)|Lung NSC(126;0.0221)|all_lung(126;0.0337)	Medulloblastoma(196;0.0109)|all_neural(177;0.0146)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)	OV - Ovarian serous cystadenocarcinoma(192;0.247)		GGAGGCTTTTGAATCTTGGGT	0.502000													16	31					0	0	1	0	0
UBTD2	92181	broad.mit.edu	37	5	171639088	171639088	+	Missense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr5:171639088C>G	uc003mbp.1	-	3	577	c.451G>C	c.(451-453)GAA>CAA	p.E151Q		NM_152277	NP_689490	Q8WUN7	UBTD2_HUMAN	dendritic cell-derived ubiquitin-like protein	151						cytoplasm					0	Renal(175;0.000159)|Lung NSC(126;0.00976)|all_lung(126;0.0156)	Medulloblastoma(196;0.00853)|all_neural(177;0.026)	Kidney(164;7.24e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000516)			AGCTGACATTCATATCCAGAA	0.493000													37	143					0	0	1	0	0
DRD1	1812	broad.mit.edu	37	5	174870218	174870218	+	Translation_Start_Site	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr5:174870218G>C	uc003mcz.2	-	2	830	c.-115C>G	c.(-117--113)ATCTG>ATGTG			NM_000794	NP_000785	P21728	DRD1_HUMAN	dopamine receptor D1						activation of adenylate cyclase activity by dopamine receptor signaling pathway|activation of phospholipase C activity by dopamine receptor signaling pathway|adult walking behavior|cerebral cortex GABAergic interneuron migration|elevation of cytosolic calcium ion concentration involved in G-protein signaling coupled to IP3 second messenger|mating behavior|positive regulation of cAMP biosynthetic process|positive regulation of cell migration|positive regulation of potassium ion transport|positive regulation of release of sequestered calcium ion into cytosol|positive regulation of synaptic transmission, glutamatergic|prepulse inhibition|response to drug|synapse assembly|visual learning	endoplasmic reticulum membrane|membrane fraction	protein binding			ovary(2)|skin(1)	3	all_cancers(89;0.00895)|Renal(175;0.000159)|Lung NSC(126;0.00625)|all_lung(126;0.0104)	Medulloblastoma(196;0.0208)|all_neural(177;0.0277)|all_hematologic(541;0.214)	Kidney(164;3.85e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000183)		Acetophenazine(DB01063)|Amantadine(DB00915)|Apomorphine(DB00714)|Carphenazine(DB01038)|Chlorprothixene(DB01239)|Clozapine(DB00363)|Cocaine(DB00907)|Dopamine(DB00988)|Fenoldopam(DB00800)|Flupenthixol(DB00875)|Fluphenazine(DB00623)|Haloperidol(DB00502)|Levodopa(DB01235)|Lisuride(DB00589)|Loxapine(DB00408)|Methylergonovine(DB00353)|Minaprine(DB00805)|Olanzapine(DB00334)|Pegademase bovine(DB00061)|Pergolide(DB01186)|Perphenazine(DB00850)|Prochlorperazine(DB00433)|Promazine(DB00420)|Propiomazine(DB00777)|Quetiapine(DB01224)|Thiethylperazine(DB00372)|Thioridazine(DB00679)|Triflupromazine(DB00508)|Zuclopenthixol(DB01624)	TGCACAGCCAGATTGCTTCCC	0.547000													3	13					0	0	1	0	0
HRH2	3274	broad.mit.edu	37	5	175111023	175111023	+	Missense_Mutation	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr5:175111023G>A	uc003mdd.2	+	1	2560	c.787G>A	c.(787-789)GAT>AAT	p.D263N	HRH2_uc003mdc.3_Missense_Mutation_p.D263N	NM_022304	NP_071640	P25021	HRH2_HUMAN	histamine receptor H2 isoform 2	263	Extracellular (Potential).				G-protein signaling, coupled to cyclic nucleotide second messenger|immune response	integral to plasma membrane	histamine receptor activity			ovary(1)	1	all_cancers(89;0.00805)|Renal(175;0.000269)|Lung NSC(126;0.00419)|all_lung(126;0.00711)	Medulloblastoma(196;0.0208)|all_neural(177;0.0277)|all_hematologic(541;0.214)	Kidney(164;3.85e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000183)	Colorectal(1;0.0154)|COAD - Colon adenocarcinoma(1;0.149)	Betazole(DB00272)|Cimetidine(DB00501)|Doxepin(DB01142)|Epinastine(DB00751)|Famotidine(DB00927)|Histamine Phosphate(DB00667)|Nizatidine(DB00585)|Ranitidine(DB00863)	GAGAGGGGATGATGCCATCAA	0.567000													38	125					0	0	1	0	0
GPRIN1	114787	broad.mit.edu	37	5	176023997	176023997	+	Missense_Mutation	SNP	C	G	G	rs147780512		TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr5:176023997C>G	uc003meo.1	-	2	3014	c.2839G>C	c.(2839-2841)GAG>CAG	p.E947Q		NM_052899	NP_443131	Q7Z2K8	GRIN1_HUMAN	G protein-regulated inducer of neurite outgrowth	947	Interaction with GNAO1 (By similarity).					growth cone|plasma membrane				ovary(2)	2	all_cancers(89;0.00263)|Renal(175;0.000269)|Lung NSC(126;0.00902)|all_lung(126;0.0142)	Medulloblastoma(196;0.0208)|all_neural(177;0.0416)	Kidney(164;3.85e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)			CCGTGCTCCTCGATCTGTCGC	0.532000													18	38					0	0	1	0	0
SLC34A1	6569	broad.mit.edu	37	5	176824804	176824804	+	Missense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr5:176824804C>G	uc003mgk.3	+	13	1538	c.1437C>G	c.(1435-1437)TTC>TTG	p.F479L		NM_003052	NP_003043	Q06495	NPT2A_HUMAN	solute carrier family 34 (sodium phosphate),	479	Helical; Name=M6; (Potential).				phosphate ion homeostasis|response to cadmium ion|response to lead ion|response to mercury ion|sodium ion transport	brush border membrane|integral to plasma membrane	protein binding|sodium-dependent phosphate transmembrane transporter activity|symporter activity			ovary(1)	1	all_cancers(89;2.04e-05)|Renal(175;0.000269)|Lung NSC(126;0.000832)|all_lung(126;0.00152)	all_neural(177;0.00409)|Medulloblastoma(196;0.00498)|all_hematologic(541;0.21)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)			GTCACTTCTTCTTCAACATCT	0.617000													36	121					0	0	1	0	0
DOK3	79930	broad.mit.edu	37	5	176931884	176931884	+	Missense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr5:176931884C>G	uc003mhk.2	-	5	678	c.673G>C	c.(673-675)GAG>CAG	p.E225Q	DOK3_uc003mhh.3_Missense_Mutation_p.E55Q|DOK3_uc003mhi.3_Missense_Mutation_p.E169Q|DOK3_uc003mhj.3_Missense_Mutation_p.E67Q|DOK3_uc003mhl.2_Missense_Mutation_p.E169Q	NM_024872	NP_079148	Q7L591	DOK3_HUMAN	docking protein 3 isoform 1	225	IRS-type PTB.					cytoplasm|plasma membrane	insulin receptor binding				0	all_cancers(89;0.00033)|Renal(175;0.000269)|Lung NSC(126;0.00161)|all_lung(126;0.00286)	all_neural(177;0.00802)|Medulloblastoma(196;0.0145)|all_hematologic(541;0.248)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)|Epithelial(233;0.191)			GTGGCGGCCTCAGTCCTCTGC	0.692000													10	36					0	0	1	0	0
OR2V2	285659	broad.mit.edu	37	5	180582416	180582416	+	Missense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr5:180582416G>C	uc011dhj.1	+	1	474	c.474G>C	c.(472-474)TTG>TTC	p.L158F		NM_206880	NP_996763	Q96R30	OR2V2_HUMAN	olfactory receptor, family 2, subfamily V,	158	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|central_nervous_system(1)	2	all_cancers(89;8.26e-06)|all_epithelial(37;1.02e-06)|Renal(175;0.000159)|Lung NSC(126;0.00354)|all_lung(126;0.00609)|Breast(19;0.0684)	all_cancers(40;0.0103)|Medulloblastoma(196;0.0392)|all_neural(177;0.0529)|all_hematologic(541;0.0652)|all_lung(500;0.149)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)			TCGATGGCTTGATCCAGATGG	0.493000													64	157					0	0	1	0	0
TRIM7	81786	broad.mit.edu	37	5	180631636	180631636	+	Missense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr5:180631636G>C	uc003mmz.1	-	1	542	c.475C>G	c.(475-477)CGC>GGC	p.R159G	TRIM7_uc003mmw.1_5'Flank|TRIM7_uc003mmx.1_5'Flank|TRIM7_uc003mmy.1_5'Flank|TRIM7_uc003mna.2_Missense_Mutation_p.R159G	NM_203293	NP_976038	Q9C029	TRIM7_HUMAN	tripartite motif-containing 7 isoform 1	159	B box-type.					cytoplasm|nucleus	zinc ion binding			ovary(2)|skin(1)	3	all_cancers(89;6.03e-06)|all_epithelial(37;7.1e-07)|Renal(175;0.000159)|Lung NSC(126;0.00354)|all_lung(126;0.00609)|Breast(19;0.0684)	all_cancers(40;0.000172)|Medulloblastoma(196;0.0133)|all_neural(177;0.0199)|all_lung(500;0.0221)|all_hematologic(541;0.0433)|Lung NSC(249;0.132)|Ovarian(839;0.238)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)	all cancers(165;2e-06)|Epithelial(171;1.35e-05)|OV - Ovarian serous cystadenocarcinoma(192;0.000128)|Kidney(146;0.0674)|GBM - Glioblastoma multiforme(465;0.0802)		GCGTGCTCGCGGTGCTCGCGG	0.731000													8	12					0	0	1	0	0
GMDS	2762	broad.mit.edu	37	6	1624425	1624425	+	Missense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr6:1624425C>G	uc003mtq.2	-	11	1288	c.1098G>C	c.(1096-1098)ATG>ATC	p.M366I		NM_001500	NP_001491	O60547	GMDS_HUMAN	GDP-mannose 4,6-dehydratase	366					'de novo' GDP-L-fucose biosynthetic process|GDP-mannose metabolic process|leukocyte cell-cell adhesion		coenzyme binding|GDP-mannose 4,6-dehydratase activity			central_nervous_system(1)	1	Ovarian(93;0.0733)	all_cancers(2;7.64e-19)|all_epithelial(2;3.05e-16)|Colorectal(2;0.00414)|all_hematologic(90;0.00997)|all_lung(73;0.0141)|Lung NSC(90;0.0802)		Epithelial(2;7.61e-06)|all cancers(2;0.000111)|STAD - Stomach adenocarcinoma(2;0.000231)|Colorectal(2;0.00445)|COAD - Colon adenocarcinoma(2;0.0125)|OV - Ovarian serous cystadenocarcinoma(45;0.0563)		GGTTTGTCCTCATGAGCTCCA	0.677000													10	56					0	0	1	0	0
MYLK4	340156	broad.mit.edu	37	6	2749514	2749514	+	Missense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr6:2749514C>G	uc003mty.3	-	2	312	c.15G>C	c.(13-15)AAG>AAC	p.K5N		NM_001012418	NP_001012418	Q86YV6	MYLK4_HUMAN	myosin light chain kinase family, member 4	5							ATP binding|protein serine/threonine kinase activity			breast(3)|ovary(1)	4	Ovarian(93;0.0412)	all_hematologic(90;0.0897)				CTTCCAGCCTCTTCACTTTTA	0.418000													29	170					0	0	1	0	0
FAM50B	26240	broad.mit.edu	37	6	3850731	3850731	+	Missense_Mutation	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr6:3850731C>T	uc003mvu.2	+	2	798	c.686C>T	c.(685-687)TCC>TTC	p.S229F		NM_012135	NP_036267	Q9Y247	FA50B_HUMAN	family with sequence similarity 50, member B	229						nucleus				pancreas(1)	1	Ovarian(93;0.0925)	all_hematologic(90;0.108)				GAGCTGCGCTCCGCCGGCGTG	0.652000													18	53					0	0	1	0	0
CAGE1	285782	broad.mit.edu	37	6	7373584	7373584	+	Missense_Mutation	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr6:7373584C>T	uc003mxi.2	-	4	1781	c.1060G>A	c.(1060-1062)GAA>AAA	p.E354K	CAGE1_uc003mxh.2_RNA|CAGE1_uc003mxj.2_Missense_Mutation_p.E245K|CAGE1_uc003mxk.1_Missense_Mutation_p.E245K	NM_205864	NP_995586	Q8TC20	CAGE1_HUMAN	cancer antigen 1	490	Potential.										0	Ovarian(93;0.0418)					TTCTGGAATTCCTCCTGTAAA	0.383000													11	37					0	0	1	0	0
RIOK1	83732	broad.mit.edu	37	6	7413155	7413155	+	Missense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr6:7413155G>C	uc003mxn.2	+	15	1597	c.1423G>C	c.(1423-1425)GAT>CAT	p.D475H	RIOK1_uc003mxo.2_Missense_Mutation_p.D234H	NM_031480	NP_113668	Q9BRS2	RIOK1_HUMAN	RIO kinase 1 isoform 1	475	Protein kinase.						ATP binding|protein serine/threonine kinase activity			ovary(2)|stomach(1)|skin(1)	4	Ovarian(93;0.0418)					ATTGAAGAAAGATTTGTCAGG	0.274000													11	34					0	0	1	0	0
DSP	1832	broad.mit.edu	37	6	7582905	7582905	+	Nonsense_Mutation	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr6:7582905C>T	uc003mxp.1	+	24	5689	c.5410C>T	c.(5410-5412)CAG>TAG	p.Q1804*	DSP_uc003mxq.1_Nonsense_Mutation_p.Q1205*	NM_004415	NP_004406	P15924	DESP_HUMAN	desmoplakin isoform I	1804	Central fibrous rod domain.|Potential.				cellular component disassembly involved in apoptosis|keratinocyte differentiation|peptide cross-linking	cornified envelope|cytoplasm|desmosome	protein binding, bridging|structural constituent of cytoskeleton			central_nervous_system(6)|ovary(2)|skin(1)	9	Ovarian(93;0.0584)	all_hematologic(90;0.236)		OV - Ovarian serous cystadenocarcinoma(45;0.000508)		ATCAAAGAATCAGTGTACTCA	0.403000													47	114					0	0	1	0	0
PIP5K1P1	206426	broad.mit.edu	37	6	7986858	7986858	+	Missense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr6:7986858C>G	uc003mxx.3	+	1	524	c.89C>G	c.(88-90)TCT>TGT	p.S30C	TXNDC5_uc003mxw.2_Intron	NR_027712				RecName: Full=Phosphatidylinositol-4-phosphate 5-kinase type-1 alpha;          Short=PtdIns(4)P-5-kinase alpha;          Short=PIP5KIalpha;          EC=2.7.1.68; AltName: Full=Phosphatidylinositol-4-phosphate 5-kinase type I alpha; AltName: Full=68 kDa type I phosphatidylinositol-4-phosphate 5-kinase alpha;												0						TCCTCAGCATCTGGAATCTTG	0.592000													8	21					0	0	1	0	0
HIVEP1	3096	broad.mit.edu	37	6	12125327	12125327	+	Missense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr6:12125327G>C	uc003nac.2	+	4	5478	c.5299G>C	c.(5299-5301)GAT>CAT	p.D1767H	HIVEP1_uc011diq.1_RNA	NM_002114	NP_002105	P15822	ZEP1_HUMAN	human immunodeficiency virus type I enhancer	1767					transcription, DNA-dependent	cytoplasm|nucleus	DNA binding|protein binding|zinc ion binding			ovary(3)|large_intestine(1)|central_nervous_system(1)|skin(1)	6	Breast(50;0.0639)|Ovarian(93;0.0816)	all_hematologic(90;0.117)				GCGGGCCAAAGATGAAAATGG	0.428000													20	101					0	0	1	0	0
CCDC90A	63933	broad.mit.edu	37	6	13807193	13807193	+	Missense_Mutation	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr6:13807193C>T	uc003nbd.2	-	2	627	c.499G>A	c.(499-501)GAC>AAC	p.D167N	CCDC90A_uc010jpf.2_RNA	NM_001031713	NP_001026883	Q96AQ8	CC90A_HUMAN	coiled-coil domain containing 90A precursor	167						integral to membrane|mitochondrion					0	Breast(50;0.0027)|Ovarian(93;0.0964)	all_hematologic(90;0.117)				GCATGAGTGTCGAAGTAGAGT	0.443000													27	121					0	0	1	0	0
RNF182	221687	broad.mit.edu	37	6	13977765	13977765	+	Missense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr6:13977765G>C	uc003nbe.2	+	3	833	c.415G>C	c.(415-417)GAG>CAG	p.E139Q	RNF182_uc003nbf.2_Missense_Mutation_p.E139Q|RNF182_uc003nbg.2_Missense_Mutation_p.E139Q	NM_152737	NP_689950	Q8N6D2	RN182_HUMAN	ring finger protein 182	139				E -> K (in Ref. 1; BAC03481).		cytoplasm|integral to membrane|intracellular membrane-bounded organelle	protein binding|ubiquitin-protein ligase activity|zinc ion binding			large_intestine(2)|ovary(1)	3	Breast(50;0.00405)|Ovarian(93;0.0964)	all_hematologic(90;0.135)	Epithelial(50;0.195)			GGTGCAGAGAGAGAGCTCCCC	0.552000													4	110					0	0	1	0	0
DTNBP1	84062	broad.mit.edu	37	6	15652368	15652368	+	Silent	SNP	C	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr6:15652368C>A	uc003nbm.2	-	2	231	c.60G>T	c.(58-60)CTG>CTT	p.L20L	DTNBP1_uc003nbl.2_5'UTR|DTNBP1_uc003nbn.2_RNA|DTNBP1_uc003nbo.2_RNA|DTNBP1_uc003nbp.2_Silent_p.L20L|DTNBP1_uc010jph.2_Silent_p.L7L	NM_032122	NP_115498	Q96EV8	DTBP1_HUMAN	dystrobrevin binding protein 1 isoform a	20					actin cytoskeleton reorganization|cellular membrane organization|neuron projection morphogenesis|post-Golgi vesicle-mediated transport|regulation of dopamine receptor signaling pathway	axon part|BLOC-1 complex|cell junction|dendritic spine|endoplasmic reticulum membrane|endosome membrane|growth cone|melanosome membrane|nucleus|postsynaptic density|postsynaptic membrane|sarcolemma|synaptic vesicle membrane|synaptosome	identical protein binding				0	Breast(50;0.0289)|Ovarian(93;0.103)	all_hematologic(90;0.0895)	Epithelial(50;0.211)			TTAAAGTCTTCAGCCtataat	0.209000									Hermansky-Pudlak_syndrome				3	55					1	1	1	1	0
GMPR	2766	broad.mit.edu	37	6	16295275	16295275	+	Missense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr6:16295275G>C	uc003nbs.2	+	9	1010	c.896G>C	c.(895-897)GGA>GCA	p.G299A		NM_006877	NP_006868	P36959	GMPR1_HUMAN	guanosine monophosphate reductase	299					nucleotide metabolic process|purine base metabolic process|purine-containing compound salvage|response to cold	cytosol	GMP reductase activity|metal ion binding			ovary(1)	1	Breast(50;0.0427)|Ovarian(93;0.103)	all_hematologic(90;0.0895)				CCTTACAAAGGAGATGTGGAA	0.507000													24	73					0	0	1	0	0
KIF13A	63971	broad.mit.edu	37	6	17804679	17804679	+	Silent	SNP	G	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr6:17804679G>T	uc003ncg.3	-	20	2472	c.2367C>A	c.(2365-2367)CTC>CTA	p.L789L	KIF13A_uc003ncf.2_Silent_p.L789L|KIF13A_uc003nch.3_Silent_p.L789L|KIF13A_uc003nci.3_Silent_p.L789L	NM_022113	NP_071396	Q9H1H9	KI13A_HUMAN	kinesin family member 13A isoform a	789					cargo loading into vesicle|cell cycle|cytokinesis|endosome to lysosome transport|Golgi to plasma membrane protein transport|melanosome organization|plus-end-directed vesicle transport along microtubule	centrosome|endosome membrane|microtubule|midbody|trans-Golgi network membrane	ATP binding|microtubule motor activity|protein binding			large_intestine(2)|ovary(2)	4	Breast(50;0.0107)|Ovarian(93;0.016)	all_hematologic(90;0.125)	all cancers(50;0.0865)|Epithelial(50;0.0974)			CCACCCCGATGAGGTTGTGAT	0.502000													3	7					0.115264	0.115599	1	1	0
FAM65B	9750	broad.mit.edu	37	6	24843776	24843776	+	Missense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr6:24843776G>C	uc003neo.1	-	14	1410	c.1234C>G	c.(1234-1236)CTA>GTA	p.L412V	FAM65B_uc011djs.1_Missense_Mutation_p.L391V|FAM65B_uc011dju.1_Missense_Mutation_p.L396V|FAM65B_uc003nep.2_Missense_Mutation_p.L362V|FAM65B_uc011djt.1_Missense_Mutation_p.L362V	NM_014722	NP_055537	Q9Y4F9	FA65B_HUMAN	hypothetical protein LOC9750 isoform 1	412					cell differentiation|muscle organ development	cytoskeleton|filopodium|mitochondrion	binding			ovary(1)	1						TCATCAGGTAGATTTGACTAT	0.423000													8	21					0	0	1	0	0
SLC17A1	6568	broad.mit.edu	37	6	25826704	25826704	+	Silent	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr6:25826704G>A	uc003nfh.3	-	3	308	c.192C>T	c.(190-192)CTC>CTT	p.L64L	SLC17A1_uc011djy.1_RNA|SLC17A1_uc010jqb.1_Silent_p.L62L|SLC17A1_uc010jqc.1_Silent_p.L62L	NM_005074	NP_005065	Q14916	NPT1_HUMAN	solute carrier family 17 (sodium phosphate),	64					sodium ion transport|urate metabolic process	integral to plasma membrane|membrane fraction	sodium-dependent phosphate transmembrane transporter activity|symporter activity			ovary(3)|pancreas(1)	4						TATTATCCAGGAGCTTCTTTG	0.393000													41	155					0	0	1	0	0
HIST1H1A	3024	broad.mit.edu	37	6	26017517	26017517	+	Missense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr6:26017517C>G	uc003nfo.2	-	1	524	c.444G>C	c.(442-444)AAG>AAC	p.K148N		NM_005325	NP_005316	Q02539	H11_HUMAN	histone cluster 1, H1a	148					nucleosome assembly|spermatogenesis	nucleosome|nucleus	DNA binding			ovary(2)	2						TCTTGACGCTCTTTTTGCTAG	0.483000													62	186					0	0	1	0	0
HIST1H2BD	3017	broad.mit.edu	37	6	26158626	26158626	+	Missense_Mutation	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr6:26158626G>A	uc003ngr.2	+	1	278	c.229G>A	c.(229-231)GAG>AAG	p.E77K	HIST1H2BD_uc003ngs.2_Missense_Mutation_p.E77K	NM_021063	NP_066407	P58876	H2B1D_HUMAN	histone cluster 1, H2bd	77					nucleosome assembly	nucleosome|nucleus	DNA binding			ovary(1)|pancreas(1)	2						CATCGCAGGCGAGGCTTCCCG	0.612000													7	249					0	0	1	0	0
HIST1H4F	8361	broad.mit.edu	37	6	26240864	26240864	+	Missense_Mutation	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr6:26240864G>A	uc003nhe.1	+	1	211	c.211G>A	c.(211-213)GTA>ATA	p.V71I		NM_003540	NP_003531	P62805	H4_HUMAN	histone cluster 1, H4f	71				V -> A (in Ref. 14; AAH67496).	CenH3-containing nucleosome assembly at centromere|negative regulation of megakaryocyte differentiation|phosphatidylinositol-mediated signaling|telomere maintenance	nucleoplasm|nucleosome	DNA binding|protein binding				0		all_hematologic(11;0.0945)|Acute lymphoblastic leukemia(11;0.167)				ACGGGACGCCGTAACCTACAC	0.582000													28	84					0	0	1	0	0
HIST1H2BI	8346	broad.mit.edu	37	6	26273420	26273420	+	Missense_Mutation	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr6:26273420C>T	uc003nhk.2	+	1	217	c.217C>T	c.(217-219)CGC>TGC	p.R73C	HIST1H3G_uc003nhi.2_5'Flank	NM_003525	NP_003516	P62807	H2B1C_HUMAN	histone cluster 1, H2bi	73					defense response to bacterium|nucleosome assembly	nucleosome|nucleus	DNA binding|protein binding				0						CATTTTCGAGCGCATTGCAGG	0.582000													8	239					0	0	1	0	0
HIST1H2BI	8346	broad.mit.edu	37	6	26273432	26273432	+	Missense_Mutation	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr6:26273432G>A	uc003nhk.2	+	1	229	c.229G>A	c.(229-231)GAG>AAG	p.E77K	HIST1H3G_uc003nhi.2_5'Flank	NM_003525	NP_003516	P62807	H2B1C_HUMAN	histone cluster 1, H2bi	77					defense response to bacterium|nucleosome assembly	nucleosome|nucleus	DNA binding|protein binding				0						CATTGCAGGCGAGGCTTCCCG	0.587000													42	182					0	0	1	0	0
BTN3A3	10384	broad.mit.edu	37	6	26444366	26444366	+	Silent	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr6:26444366G>A	uc003nhz.2	+	4	447	c.267G>A	c.(265-267)CAG>CAA	p.Q89Q	BTN3A3_uc003nia.2_Silent_p.Q47Q|BTN3A3_uc011dkn.1_Silent_p.Q47Q	NM_006994	NP_008925	O00478	BT3A3_HUMAN	butyrophilin, subfamily 3, member A3 isoform a	89	Extracellular (Potential).|Ig-like V-type 1.					integral to membrane					0						AAGACAGGCAGAGTGCACCGT	0.552000													21	109					0	0	1	0	0
ZFP57	346171	broad.mit.edu	37	6	29643801	29643801	+	Missense_Mutation	SNP	G	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr6:29643801G>T	uc011dlw.1	-	2	310	c.159C>A	c.(157-159)TTC>TTA	p.F53L	ZFP57_uc003nnl.3_Missense_Mutation_p.F33L	NM_001109809	NP_001103279	Q9NU63	ZFP57_HUMAN	zinc finger protein 57 homolog	25	KRAB.				DNA methylation involved in embryo development|regulation of gene expression by genetic imprinting|transcription, DNA-dependent		DNA binding|zinc ion binding			ovary(3)|skin(2)	5						CTTCCTGGGTGAAATTCACTG	0.393000													63	292					1.49552e-23	1.56512e-23	1	1	0
HLA-A	3105	broad.mit.edu	37	6	29910587	29910587	+	Nonsense_Mutation	SNP	G	T	T	rs41549014		TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr6:29910587G>T	uc003nol.2	+	2	127	c.127G>T	c.(127-129)GAG>TAG	p.E43*	HLA-G_uc011dmb.1_Intron|HCG4P6_uc003nog.1_Intron|HLA-A_uc010jrq.2_5'UTR|HLA-A_uc003nok.2_5'UTR|HLA-A_uc003non.2_Nonsense_Mutation_p.E43*|HLA-A_uc003noo.2_Nonsense_Mutation_p.E43*|HLA-A_uc010jrr.2_Nonsense_Mutation_p.E43*|HLA-A_uc003nom.2_5'UTR|HLA-A_uc010klp.2_Nonsense_Mutation_p.E15*|HLA-A_uc011dmc.1_5'UTR|HLA-A_uc011dmd.1_5'Flank	NM_002116	NP_002107	P30443	1A01_HUMAN	major histocompatibility complex, class I, A	43	Extracellular (Potential).|Alpha-1.				antigen processing and presentation of peptide antigen via MHC class I|interferon-gamma-mediated signaling pathway|interspecies interaction between organisms|regulation of immune response|type I interferon-mediated signaling pathway	integral to plasma membrane|MHC class I protein complex	MHC class I receptor activity			upper_aerodigestive_tract(1)|ovary(1)	2						CGGCCGCGGGGAGCCCCGCTT	0.706000									Melanoma_Familial_Clustering_of|Lichen_Sclerosis_et_Atrophicus_Familial_Clustering_of|Osteosarcoma_Familial_Clustering_of|Naso-/Oropharyngeal/Laryngeal_Cancer_Familial_Clustering_of	Multiple Myeloma(9;0.094)			5	15					8.12818e-05	8.28434e-05	1	1	0
TRIM40	135644	broad.mit.edu	37	6	30114945	30114945	+	Silent	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr6:30114945C>T	uc003npk.2	+	4	1011	c.625C>T	c.(625-627)CTG>TTG	p.L209L	TRIM40_uc003npm.2_Silent_p.L180L	NM_138700	NP_619645	Q6P9F5	TRI40_HUMAN	tripartite motif-containing 40	209						intracellular	zinc ion binding			ovary(1)	1						GGTCATTGATCTGGAAAGGAC	0.572000													17	122					0	0	1	0	0
GNL1	2794	broad.mit.edu	37	6	30522575	30522575	+	Missense_Mutation	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr6:30522575G>A	uc003nqh.2	-	4	1522	c.494C>T	c.(493-495)TCT>TTT	p.S165F	GNL1_uc011dmi.1_Missense_Mutation_p.S27F|GNL1_uc011dmj.1_Missense_Mutation_p.S163F|GNL1_uc011dmk.1_Intron|PRR3_uc003nqi.1_5'Flank|PRR3_uc003nqj.1_5'Flank	NM_005275	NP_005266	P36915	GNL1_HUMAN	guanine nucleotide binding protein-like 1	165					response to DNA damage stimulus|signal transduction|T cell mediated immunity	extracellular space|intracellular	GTP binding|structural molecule activity			ovary(3)	3						GAGTTTCTCAGAGGAGTAAGC	0.493000													21	88					0	0	1	0	0
MDC1	9656	broad.mit.edu	37	6	30670607	30670607	+	Silent	SNP	G	A	A	rs140061594	byFrequency	TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr6:30670607G>A	uc003nrg.3	-	13	6353	c.5913C>T	c.(5911-5913)ACC>ACT	p.T1971T	MDC1_uc003nrf.3_Silent_p.T602T	NM_014641	NP_055456	Q14676	MDC1_HUMAN	mediator of DNA-damage checkpoint 1	1971	Required for nuclear localization (NLS2).				cell cycle|double-strand break repair via homologous recombination|intra-S DNA damage checkpoint	focal adhesion|nucleoplasm	FHA domain binding|protein C-terminus binding			breast(2)|ovary(1)|kidney(1)	4						GCTCAGGGTCGGTCACCACAT	0.547000								Other_conserved_DNA_damage_response_genes					7	175					0	0	1	0	0
VARS2	57176	broad.mit.edu	37	6	30889913	30889913	+	Missense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr6:30889913C>G	uc003nsc.1	+	19	2459	c.1827C>G	c.(1825-1827)TTC>TTG	p.F609L	VARS2_uc011dmx.1_Missense_Mutation_p.F609L|VARS2_uc011dmy.1_Missense_Mutation_p.F469L|VARS2_uc011dmz.1_Missense_Mutation_p.F639L|VARS2_uc011dna.1_Missense_Mutation_p.F607L|VARS2_uc011dnb.1_RNA|VARS2_uc011dnc.1_RNA|VARS2_uc011dnd.1_Missense_Mutation_p.L25V|VARS2_uc010jsg.1_5'UTR|VARS2_uc010jsh.1_5'Flank	NM_020442	NP_065175	Q5ST30	SYVM_HUMAN	valyl-tRNA synthetase 2, mitochondrial	609					valyl-tRNA aminoacylation	mitochondrion	ATP binding|valine-tRNA ligase activity			ovary(3)|central_nervous_system(1)	4						TTGCTCGTTTCTACCCCCTGT	0.632000													41	142					0	0	1	0	0
EHMT2	10919	broad.mit.edu	37	6	31860267	31860267	+	Missense_Mutation	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr6:31860267C>T	uc003nxz.1	-	7	791	c.781G>A	c.(781-783)GAG>AAG	p.E261K	EHMT2_uc003nxy.1_Missense_Mutation_p.E52K|EHMT2_uc011don.1_Missense_Mutation_p.E318K|EHMT2_uc003nya.1_Missense_Mutation_p.E261K	NM_006709	NP_006700	Q96KQ7	EHMT2_HUMAN	euchromatic histone-lysine N-methyltransferase 2	261					DNA methylation|peptidyl-lysine dimethylation	chromosome|nucleus	histone methyltransferase activity (H3-K27 specific)|histone methyltransferase activity (H3-K9 specific)|p53 binding|zinc ion binding			ovary(1)	1						GTCTCCCACTCCTCCAGGGAC	0.552000													4	92					0	0	1	0	0
RDBP	7936	broad.mit.edu	37	6	31926158	31926158	+	Silent	SNP	G	C	C	rs148391435	byFrequency	TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr6:31926158G>C	uc003nyk.2	-	2	270	c.66C>G	c.(64-66)CTC>CTG	p.L22L	RDBP_uc011dot.1_Silent_p.L22L|RDBP_uc003nyl.1_5'UTR|RDBP_uc003nym.1_Silent_p.L22L|MIR1236_hsa-mir-1236|MI0006326_5'Flank|SKIV2L_uc003nyn.1_5'Flank|SKIV2L_uc011dou.1_5'Flank|SKIV2L_uc011dov.1_5'Flank	NM_002904	NP_002895	P18615	NELFE_HUMAN	RD RNA-binding protein	22	Potential.				positive regulation of viral transcription|regulation of transcription, DNA-dependent|transcription elongation from RNA polymerase II promoter|viral reproduction	mitochondrion|nucleoplasm	nucleotide binding|protein binding|RNA binding				0						CCTTTTTCTTGAGCTTGTTGA	0.522000													26	136					0	0	1	0	0
RDBP	7936	broad.mit.edu	37	6	31926167	31926167	+	Silent	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr6:31926167G>A	uc003nyk.2	-	2	261	c.57C>T	c.(55-57)TTC>TTT	p.F19F	RDBP_uc011dot.1_Silent_p.F19F|RDBP_uc003nyl.1_5'UTR|RDBP_uc003nym.1_Silent_p.F19F|MIR1236_hsa-mir-1236|MI0006326_5'Flank|SKIV2L_uc003nyn.1_5'Flank|SKIV2L_uc011dou.1_5'Flank|SKIV2L_uc011dov.1_5'Flank	NM_002904	NP_002895	P18615	NELFE_HUMAN	RD RNA-binding protein	19	Potential.				positive regulation of viral transcription|regulation of transcription, DNA-dependent|transcription elongation from RNA polymerase II promoter|viral reproduction	mitochondrion|nucleoplasm	nucleotide binding|protein binding|RNA binding				0						TGAGCTTGTTGAATTTCTTCT	0.527000													27	144					0	0	1	0	0
TNXB	7148	broad.mit.edu	37	6	32065772	32065772	+	Missense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr6:32065772C>G	uc003nzl.2	-	2	406	c.204G>C	c.(202-204)GAG>GAC	p.E68D	TNXB_uc010jts.1_Missense_Mutation_p.E67D|ATF6B_uc003nzm.1_3'UTR	NM_019105	NP_061978	P22105	TENX_HUMAN	tenascin XB isoform 1 precursor	68					actin cytoskeleton organization|cell adhesion|collagen metabolic process|elastic fiber assembly|signal transduction	extracellular space|intracellular|proteinaceous extracellular matrix	heparin binding|integrin binding				0						CCACCTGCTTCTCCCCTCCTT	0.657000													17	30					0	0	1	0	0
HLA-DMB	3109	broad.mit.edu	37	6	32905079	32905079	+	Missense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr6:32905079C>G	uc003ocl.1	-	3	725	c.492G>C	c.(490-492)AAG>AAC	p.K164N	HLA-DMB_uc003ocj.1_3'UTR|HLA-DMB_uc003ock.1_5'Flank|HLA-DMB_uc010jud.1_Missense_Mutation_p.K33N|HLA-DMB_uc010jue.1_Missense_Mutation_p.K33N|HLA-DMB_uc010juf.1_Missense_Mutation_p.K33N|HLA-DMB_uc011dql.1_Missense_Mutation_p.K164N	NM_002118	NP_002109	P28068	DMB_HUMAN	major histocompatibility complex, class II, DM	164	Lumenal (Potential).|Ig-like C1-type.|Beta-2.				antigen processing and presentation of peptide or polysaccharide antigen via MHC class II|interferon-gamma-mediated signaling pathway|T cell costimulation|T cell receptor signaling pathway	integral to membrane|late endosome membrane|lysosomal membrane|MHC class II protein complex					0						GCTGGGCAGTCTTGTGCGCAC	0.547000													39	127					0	0	1	0	0
HLA-DPB1	3115	broad.mit.edu	37	6	33054002	33054002	+	Missense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr6:33054002G>C	uc003ocu.1	+	5	823	c.764G>C	c.(763-765)CGA>CCA	p.R255P	HLA-DPB1_uc011dqo.1_RNA|HLA-DPB1_uc011dqp.1_Intron	NM_002121	NP_002112	P04440	DPB1_HUMAN	major histocompatibility complex, class II, DP	255	Cytoplasmic (Potential).				antigen processing and presentation of peptide or polysaccharide antigen via MHC class II|interferon-gamma-mediated signaling pathway|T cell costimulation|T cell receptor signaling pathway	endoplasmic reticulum membrane|endosome membrane|Golgi apparatus|integral to membrane|lysosomal membrane|MHC class II protein complex				ovary(1)	1						TCAGTTCAACGAGGATCTGCA	0.418000													30	143					0	0	1	0	0
COL11A2	1302	broad.mit.edu	37	6	33159972	33159972	+	Missense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr6:33159972G>C	uc003ocx.1	-	1	274	c.46C>G	c.(46-48)CTG>GTG	p.L16V	COL11A2_uc003ocy.1_Missense_Mutation_p.L16V|COL11A2_uc003ocz.1_Missense_Mutation_p.L16V|COL11A2_uc003oda.2_Missense_Mutation_p.L16V	NM_080680	NP_542411	P13942	COBA2_HUMAN	collagen, type XI, alpha 2 isoform 1	16					cartilage development|cell adhesion|collagen fibril organization|sensory perception of sound|soft palate development	collagen type XI	extracellular matrix structural constituent conferring tensile strength|protein binding, bridging			ovary(3)|skin(2)	5						CCCAGCACCAGAGGTAGGAGG	0.677000													2	4					0	0	1	0	0
RGL2	5863	broad.mit.edu	37	6	33264021	33264021	+	Silent	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr6:33264021C>T	uc003odv.2	-	6	685	c.552G>A	c.(550-552)CGG>CGA	p.R184R	RGL2_uc003odu.2_5'UTR|RGL2_uc010jur.2_Intron|RGL2_uc003odw.2_Silent_p.R102R|RGL2_uc011drb.1_Silent_p.R102R	NM_004761	NP_004752	O15211	RGL2_HUMAN	ral guanine nucleotide dissociation	184	N-terminal Ras-GEF.				Ras protein signal transduction|regulation of small GTPase mediated signal transduction	intracellular	Ras guanyl-nucleotide exchange factor activity			skin(3)|lung(1)|breast(1)|pancreas(1)	6						AGCTCTCAAGCCGGTCAAGCT	0.607000													4	186					0	0	1	0	0
RGL2	5863	broad.mit.edu	37	6	33264531	33264531	+	Missense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr6:33264531G>C	uc003odv.2	-	4	396	c.263C>G	c.(262-264)TCC>TGC	p.S88C	RGL2_uc003odu.2_5'Flank|RGL2_uc010jur.2_5'UTR|RGL2_uc003odw.2_Missense_Mutation_p.S6C|RGL2_uc011drb.1_Missense_Mutation_p.S6C	NM_004761	NP_004752	O15211	RGL2_HUMAN	ral guanine nucleotide dissociation	88	N-terminal Ras-GEF.				Ras protein signal transduction|regulation of small GTPase mediated signal transduction	intracellular	Ras guanyl-nucleotide exchange factor activity			skin(3)|lung(1)|breast(1)|pancreas(1)	6						CCGTCGGGAGGAACGTGGGGG	0.577000													23	56					0	0	1	0	0
SYNGAP1	8831	broad.mit.edu	37	6	33402938	33402938	+	Silent	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr6:33402938G>A	uc011dri.1	+	6	714	c.519G>A	c.(517-519)CTG>CTA	p.L173L	SYNGAP1_uc003oeo.1_Silent_p.L158L|SYNGAP1_uc010juy.2_Silent_p.L158L|SYNGAP1_uc010juz.2_5'Flank	NM_006772	NP_006763	Q96PV0	SYGP1_HUMAN	synaptic Ras GTPase activating protein 1	173	PH.				negative regulation of Ras protein signal transduction|signal transduction	cytoplasm|intrinsic to internal side of plasma membrane	Ras GTPase activator activity|SH3 domain binding			ovary(4)	4						GGGCCCGGCTGATGCAAAGCT	0.418000													32	125					0	0	1	0	0
RPS10	6204	broad.mit.edu	37	6	34386188	34386188	+	Missense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr6:34386188C>G	uc003ojm.2	-	5	634	c.414G>C	c.(412-414)AAG>AAC	p.K138N	RPS10_uc003ojn.2_Missense_Mutation_p.K138N	NM_001014	NP_001005	P46783	RS10_HUMAN	ribosomal protein S10	138					endocrine pancreas development|translational elongation|translational termination|viral transcription	cytosolic small ribosomal subunit|nucleolus	protein binding				0						CCTCGGCTTTCTTGTCGGCAC	0.448000													26	53					0	0	1	0	0
UHRF1BP1	54887	broad.mit.edu	37	6	34826826	34826826	+	Missense_Mutation	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr6:34826826C>T	uc003oju.3	+	14	2927	c.2693C>T	c.(2692-2694)TCA>TTA	p.S898L	UHRF1BP1_uc010jvm.1_RNA|UHRF1BP1_uc010jvn.2_RNA|UHRF1BP1_uc010jvo.2_RNA	NM_017754	NP_060224	Q6BDS2	URFB1_HUMAN	ICBP90 binding protein 1	898										ovary(3)	3						TCTGCAGGCTCAGATAGCACT	0.537000													37	58					0	0	1	0	0
ANKS1A	23294	broad.mit.edu	37	6	34985727	34985727	+	Missense_Mutation	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr6:34985727C>T	uc003ojx.3	+	11	2043	c.1901C>T	c.(1900-1902)TCA>TTA	p.S634L	ANKS1A_uc011dss.1_Intron|ANKS1A_uc011dst.1_Missense_Mutation_p.S174L|ANKS1A_uc010jvp.1_Intron	NM_015245	NP_056060	Q92625	ANS1A_HUMAN	ankyrin repeat and sterile alpha motif domain	634						cytoplasm	protein binding			ovary(3)|upper_aerodigestive_tract(1)	4						CTGACCTGCTCACCCACAGAG	0.572000													88	304					0	0	1	0	0
ANKS1A	23294	broad.mit.edu	37	6	35046359	35046359	+	Missense_Mutation	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr6:35046359G>A	uc003ojx.3	+	14	2351	c.2209G>A	c.(2209-2211)GAC>AAC	p.D737N	ANKS1A_uc011dss.1_Intron|ANKS1A_uc011dst.1_Missense_Mutation_p.D277N|ANKS1A_uc010jvp.1_Missense_Mutation_p.D111N	NM_015245	NP_056060	Q92625	ANS1A_HUMAN	ankyrin repeat and sterile alpha motif domain	737	SAM 1.					cytoplasm	protein binding			ovary(3)|upper_aerodigestive_tract(1)	4						GGAAGAGCAGGACCTGCGGGA	0.652000													42	131					0	0	1	0	0
SCUBE3	222663	broad.mit.edu	37	6	35213749	35213749	+	Missense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr6:35213749G>C	uc003okf.1	+	20	2634	c.2628G>C	c.(2626-2628)GAG>GAC	p.E876D	SCUBE3_uc003okg.1_Missense_Mutation_p.E875D|SCUBE3_uc003okh.1_Missense_Mutation_p.E763D	NM_152753	NP_689966	Q8IX30	SCUB3_HUMAN	signal peptide, CUB domain, EGF-like 3	876	CUB.				protein heterooligomerization|protein homooligomerization	cell surface|extracellular region	calcium ion binding|protein binding			skin(1)	1						CCACTTATGAGACCTGCCAGA	0.587000													5	215					0	0	1	0	0
ZNF76	7629	broad.mit.edu	37	6	35260389	35260389	+	Silent	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr6:35260389G>A	uc003oki.1	+	10	1195	c.990G>A	c.(988-990)TCG>TCA	p.S330S	ZNF76_uc011dsz.1_Silent_p.S330S|ZNF76_uc003okj.1_Silent_p.S330S	NM_003427	NP_003418	P36508	ZNF76_HUMAN	zinc finger protein 76 (expressed in testis)	330	C2H2-type 6.				regulation of transcription from RNA polymerase II promoter|regulation of transcription from RNA polymerase III promoter|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						CCGAGTACTCGAGCTTGTATA	0.532000													24	85					0	0	1	0	0
DEF6	50619	broad.mit.edu	37	6	35289057	35289057	+	Missense_Mutation	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr6:35289057G>A	uc003okk.2	+	11	1805	c.1766G>A	c.(1765-1767)GGA>GAA	p.G589E	DEF6_uc010jvs.2_Missense_Mutation_p.G564E|DEF6_uc010jvt.2_Missense_Mutation_p.G334E	NM_022047	NP_071330	Q9H4E7	DEFI6_HUMAN	differentially expressed in FDCP 6 homolog	589						cytoplasm|nucleus|plasma membrane					0						ACCCGCTGGGGATCCCAGGGC	0.642000													5	240					0	0	1	0	0
FKBP5	2289	broad.mit.edu	37	6	35587911	35587911	+	Missense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr6:35587911C>G	uc011dte.1	-	4	594	c.391G>C	c.(391-393)GAG>CAG	p.E131Q	FKBP5_uc003okx.2_Missense_Mutation_p.E131Q|FKBP5_uc011dtf.1_Intron|FKBP5_uc003oky.2_Missense_Mutation_p.E131Q|FKBP5_uc003okz.2_Missense_Mutation_p.E131Q	NM_001145776	NP_001139248	Q13451	FKBP5_HUMAN	FK506 binding protein 5 isoform 1	131					protein folding	cytoplasm|membrane|nucleus	FK506 binding|heat shock protein binding|peptidyl-prolyl cis-trans isomerase activity			ovary(1)	1						ATACTTGCCTCAAAAAAGAGA	0.448000													23	79					0	0	1	0	0
SLC26A8	116369	broad.mit.edu	37	6	35928783	35928783	+	Missense_Mutation	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr6:35928783C>T	uc003olm.2	-	13	1666	c.1555G>A	c.(1555-1557)GTT>ATT	p.V519I	SLC26A8_uc010jwa.2_RNA|SLC26A8_uc003olk.2_Missense_Mutation_p.V101I|SLC26A8_uc003oln.2_Missense_Mutation_p.V519I|SLC26A8_uc003oll.2_Missense_Mutation_p.V414I	NM_052961	NP_443193	Q96RN1	S26A8_HUMAN	solute carrier family 26, member 8 isoform a	519	Cytoplasmic (Potential).				cell differentiation|meiosis|multicellular organismal development|spermatogenesis	integral to membrane|plasma membrane	anion:anion antiporter activity|chloride channel activity|oxalate transmembrane transporter activity|protein binding|sulfate transmembrane transporter activity			ovary(2)	2						TGTGAACGAACAGTGGTGATG	0.423000													17	79					0	0	1	0	0
BRPF3	27154	broad.mit.edu	37	6	36168470	36168470	+	Nonsense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr6:36168470C>G	uc003olv.3	+	2	595	c.371C>G	c.(370-372)TCA>TGA	p.S124*	BRPF3_uc010jwb.2_Nonsense_Mutation_p.S124*|BRPF3_uc011dtj.1_RNA|BRPF3_uc010jwc.2_RNA|BRPF3_uc011dtk.1_Nonsense_Mutation_p.S124*	NM_015695	NP_056510	Q9ULD4	BRPF3_HUMAN	bromodomain and PHD finger containing, 3	124					histone H3 acetylation|platelet activation|platelet degranulation	cytosol|extracellular region|MOZ/MORF histone acetyltransferase complex	protein binding|zinc ion binding			ovary(1)|skin(1)	2						ATGGTGGACTCAGGCATCCAG	0.542000													29	114					0	0	1	0	0
DNAH8	1769	broad.mit.edu	37	6	38738332	38738332	+	Missense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr6:38738332G>C	uc003ooe.1	+	10	1710	c.1110G>C	c.(1108-1110)GAG>GAC	p.E370D		NM_001371	NP_001362			dynein, axonemal, heavy polypeptide 8											skin(8)|ovary(7)|lung(2)|large_intestine(1)|central_nervous_system(1)|kidney(1)|pancreas(1)	21						AAAGACTGGAGAAGGTAAGCA	0.363000													14	47					0	0	1	0	0
LRFN2	57497	broad.mit.edu	37	6	40400385	40400385	+	Silent	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr6:40400385G>C	uc003oph.1	-	2	933	c.468C>G	c.(466-468)CTC>CTG	p.L156L		NM_020737	NP_065788	Q9ULH4	LRFN2_HUMAN	leucine rich repeat and fibronectin type III	156	LRR 5.|Extracellular (Potential).					cell junction|integral to membrane|postsynaptic membrane				ovary(2)|skin(1)	3	Ovarian(28;0.0418)|Colorectal(47;0.196)					TGTTGTAGGAGAGGTCCAGAT	0.582000													21	63					0	0	1	0	0
NFYA	4800	broad.mit.edu	37	6	41060708	41060708	+	Missense_Mutation	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr6:41060708G>A	uc003opo.2	+	8	950	c.772G>A	c.(772-774)GAG>AAG	p.E258K	NFYA_uc003opp.2_Missense_Mutation_p.E229K|NFYA_uc003opq.2_Missense_Mutation_p.E229K	NM_002505	NP_002496	P23511	NFYA_HUMAN	nuclear transcription factor Y, alpha isoform 1	258					transcription from RNA polymerase II promoter	CCAAT-binding factor complex	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity				0	Ovarian(28;0.0418)|Colorectal(47;0.196)					ACCTGGAGCAGAGATGCTTGA	0.488000													24	113					0	0	1	0	0
KIAA0240	23506	broad.mit.edu	37	6	42819892	42819892	+	Silent	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr6:42819892G>C	uc003osn.1	+	7	2053	c.1902G>C	c.(1900-1902)CTG>CTC	p.L634L	KIAA0240_uc003osm.1_Silent_p.L634L|KIAA0240_uc011duw.1_Silent_p.L634L|KIAA0240_uc003osp.1_Silent_p.L634L	NM_015349	NP_056164	Q6AI39	K0240_HUMAN	hypothetical protein LOC23506	634										ovary(1)	1	Colorectal(47;0.196)		Colorectal(64;0.00237)|COAD - Colon adenocarcinoma(64;0.00473)|all cancers(41;0.00524)|KIRC - Kidney renal clear cell carcinoma(15;0.02)|Kidney(15;0.0388)|OV - Ovarian serous cystadenocarcinoma(102;0.104)			CAGACGGCCTGAGGCAAGCAC	0.498000													14	63					0	0	1	0	0
PPP2R5D	5528	broad.mit.edu	37	6	42974371	42974371	+	Silent	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr6:42974371C>T	uc003oth.2	+	3	362	c.276C>T	c.(274-276)TTC>TTT	p.F92F	MEA1_uc010jyc.1_Intron|PPP2R5D_uc003otg.2_Intron|PPP2R5D_uc010jyd.2_Intron|PPP2R5D_uc011dva.1_5'UTR|PPP2R5D_uc003oti.2_5'UTR|PPP2R5D_uc003otj.2_5'UTR	NM_006245	NP_006236	Q14738	2A5D_HUMAN	delta isoform of regulatory subunit B56, protein	92					nervous system development|signal transduction	cytoplasm|nucleus|protein phosphatase type 2A complex	protein binding|protein phosphatase type 2A regulator activity			breast(1)|central_nervous_system(1)	2			Colorectal(64;0.00237)|all cancers(41;0.00411)|COAD - Colon adenocarcinoma(64;0.00473)|OV - Ovarian serous cystadenocarcinoma(102;0.0664)|KIRC - Kidney renal clear cell carcinoma(15;0.133)|Kidney(15;0.188)			CCTCCCGCTTCAACCTCAGCA	0.572000													25	68					0	0	1	0	0
KLHDC3	116138	broad.mit.edu	37	6	42987094	42987094	+	Missense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr6:42987094C>G	uc003otl.2	+	10	1241	c.1072C>G	c.(1072-1074)CAT>GAT	p.H358D	C6orf153_uc003otp.1_5'Flank|KLHDC3_uc003otm.2_RNA|KLHDC3_uc010jyf.2_Missense_Mutation_p.H334D|KLHDC3_uc003otn.2_Missense_Mutation_p.H242D|KLHDC3_uc003oto.2_Missense_Mutation_p.H299D	NM_057161	NP_476502	Q9BQ90	KLDC3_HUMAN	kelch domain containing 3	358					reciprocal meiotic recombination	cytoplasm|nuclear chromatin	chromatin binding|protein binding			upper_aerodigestive_tract(1)	1			Colorectal(64;0.00237)|all cancers(41;0.0034)|COAD - Colon adenocarcinoma(64;0.00473)|OV - Ovarian serous cystadenocarcinoma(102;0.0539)|KIRC - Kidney renal clear cell carcinoma(15;0.133)|Kidney(15;0.188)			CTGTTTGCCTCATGATATCAG	0.498000													4	274					0	0	1	0	0
CUL9	23113	broad.mit.edu	37	6	43184222	43184222	+	Missense_Mutation	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr6:43184222G>A	uc003ouk.2	+	31	6338	c.6263G>A	c.(6262-6264)TGC>TAC	p.C2088Y	CUL9_uc003oul.2_Missense_Mutation_p.C2060Y|CUL9_uc010jyk.2_Missense_Mutation_p.C1240Y|CUL9_uc003oun.2_Intron	NM_015089	NP_055904	Q8IWT3	CUL9_HUMAN	p53-associated parkin-like cytoplasmic protein	2088	RING-type 1.				ubiquitin-dependent protein catabolic process	cullin-RING ubiquitin ligase complex|cytoplasm	ATP binding|ubiquitin protein ligase binding|zinc ion binding			ovary(5)|lung(3)|skin(2)|breast(1)|central_nervous_system(1)	12						TCTCTCTGCTGCATGCACTAT	0.547000													63	171					0	0	1	0	0
TTBK1	84630	broad.mit.edu	37	6	43250774	43250774	+	Missense_Mutation	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr6:43250774G>A	uc003ouq.1	+	14	2575	c.2296G>A	c.(2296-2298)GAG>AAG	p.E766K		NM_032538	NP_115927	Q5TCY1	TTBK1_HUMAN	tau tubulin kinase 1	766	Glu-rich.|Potential.					cell junction|cytoplasm|nucleus	ATP binding|protein binding|protein serine/threonine kinase activity			lung(4)|ovary(2)|skin(2)|upper_aerodigestive_tract(1)	9			Colorectal(64;0.00245)|COAD - Colon adenocarcinoma(64;0.00536)|all cancers(41;0.0125)|OV - Ovarian serous cystadenocarcinoma(102;0.0399)			agaggaggaggaggaagagga	0.274000													4	11					0	0	1	0	0
ZNF318	24149	broad.mit.edu	37	6	43322623	43322623	+	Missense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr6:43322623C>G	uc003oux.2	-	4	2527	c.2449G>C	c.(2449-2451)GAA>CAA	p.E817Q	ZNF318_uc003ouw.2_RNA	NM_014345	NP_055160	Q5VUA4	ZN318_HUMAN	zinc finger protein 318	817					meiosis|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	nucleic acid binding|zinc ion binding			ovary(3)|breast(2)|central_nervous_system(1)|skin(1)	7			Colorectal(64;0.00245)|COAD - Colon adenocarcinoma(64;0.00536)|all cancers(41;0.0171)|OV - Ovarian serous cystadenocarcinoma(102;0.0579)			CTGTGTGGTTCAGGTACAGGG	0.507000													28	88					0	0	1	0	0
GTPBP2	54676	broad.mit.edu	37	6	43591477	43591477	+	Missense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr6:43591477G>C	uc003ovs.2	-	9	1329	c.1292C>G	c.(1291-1293)TCC>TGC	p.S431C	GTPBP2_uc010jyv.2_Missense_Mutation_p.S343C|GTPBP2_uc003ovt.1_Missense_Mutation_p.S431C	NM_019096	NP_061969	Q9BX10	GTPB2_HUMAN	GTP binding protein 2	431							GTP binding|GTPase activity			liver(1)|skin(1)	2	all_cancers(18;9.36e-06)|Lung NSC(15;0.00161)|all_lung(25;0.004)		all cancers(41;0.000501)|Colorectal(64;0.00245)|COAD - Colon adenocarcinoma(64;0.00536)|STAD - Stomach adenocarcinoma(11;0.0826)|OV - Ovarian serous cystadenocarcinoma(102;0.167)			AATTTACCTGGAAAGTGTTCC	0.502000													21	72					0	0	1	0	0
AARS2	57505	broad.mit.edu	37	6	44272839	44272839	+	Missense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr6:44272839C>G	uc010jza.1	-	11	1534	c.1531G>C	c.(1531-1533)GAC>CAC	p.D511H	SPATS1_uc003oxg.2_Intron|TMEM151B_uc003oxf.2_Intron	NM_020745	NP_065796	Q5JTZ9	SYAM_HUMAN	alanyl-tRNA synthetase 2, mitochondrial	511					alanyl-tRNA aminoacylation	mitochondrion	alanine-tRNA ligase activity|ATP binding|metal ion binding|tRNA binding			ovary(1)	1	Hepatocellular(11;0.00908)|all_lung(25;0.0101)|Ovarian(13;0.0273)		Colorectal(64;0.00337)|COAD - Colon adenocarcinoma(64;0.00536)		L-Alanine(DB00160)	GGGCTGTCGTCAGTTGGGGGC	0.612000											OREG0017473	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	5	198					0	0	1	0	0
C6orf138	442213	broad.mit.edu	37	6	47846359	47846359	+	Missense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr6:47846359C>G	uc011dwm.1	-	3	2255	c.2170G>C	c.(2170-2172)GAG>CAG	p.E724Q	C6orf138_uc011dwn.1_Missense_Mutation_p.E488Q	NM_001013732	NP_001013754	Q6ZW05	CF138_HUMAN	hypothetical protein LOC442213	741						integral to membrane	hedgehog receptor activity			central_nervous_system(1)	1						CGGGTGTGCTCAGTTGCTAAT	0.423000													4	46					0	0	1	0	0
GSTA3	2940	broad.mit.edu	37	6	52761709	52761709	+	Silent	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr6:52761709G>A	uc003pbb.2	-	7	643	c.564C>T	c.(562-564)ATC>ATT	p.I188I	GSTA3_uc010jzq.2_Silent_p.I132I	NM_000847	NP_000838	Q16772	GSTA3_HUMAN	glutathione S-transferase alpha 3	188	GST C-terminal.				glutathione metabolic process|xenobiotic metabolic process	cytosol	glutathione transferase activity				0	Lung NSC(77;0.0912)				Glutathione(DB00143)	GCAGGTTGCTGATTCTGGTTT	0.507000													31	116					0	0	1	0	0
LRRC1	55227	broad.mit.edu	37	6	53778727	53778727	+	Missense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr6:53778727C>G	uc003pcd.1	+	11	1343	c.1066C>G	c.(1066-1068)CAG>GAG	p.Q356E		NM_018214	NP_060684	Q9BTT6	LRRC1_HUMAN	leucine rich repeat containing 1	356	LRR 15.					cytoplasm|membrane				ovary(1)	1	Lung NSC(77;0.0147)			BRCA - Breast invasive adenocarcinoma(397;0.0745)		AGAGGTGTCACAGGCAACAGA	0.468000													31	81					0	0	1	0	0
FAM83B	222584	broad.mit.edu	37	6	54735070	54735070	+	Missense_Mutation	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr6:54735070C>T	uc003pck.2	+	2	142	c.26C>T	c.(25-27)TCA>TTA	p.S9L		NM_001010872	NP_001010872	Q5T0W9	FA83B_HUMAN	hypothetical protein LOC222584	9										ovary(6)	6	Lung NSC(77;0.0178)|Renal(3;0.122)					ATGCTTTCCTCATTGAATGAT	0.408000													39	83					0	0	1	0	0
PHF3	23469	broad.mit.edu	37	6	64395258	64395258	+	Silent	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr6:64395258C>G	uc003pep.1	+	3	1661	c.1635C>G	c.(1633-1635)GTC>GTG	p.V545V	PHF3_uc010kaf.1_Silent_p.V545V|PHF3_uc003pem.2_Silent_p.V498V|PHF3_uc010kag.1_Silent_p.V457V|PHF3_uc010kah.1_Silent_p.V359V|PHF3_uc003pen.2_Silent_p.V457V|PHF3_uc011dxs.1_Intron|PHF3_uc003peo.2_Silent_p.V545V	NM_015153	NP_055968	Q92576	PHF3_HUMAN	PHD finger protein 3	545					multicellular organismal development|transcription, DNA-dependent	nucleus	zinc ion binding			ovary(3)|lung(1)|skin(1)	5	all_cancers(3;0.0241)|all_epithelial(2;0.00306)|Lung NSC(77;0.121)		LUSC - Lung squamous cell carcinoma(74;0.0644)|Lung(124;0.148)			ATAGGCCAGTCAAAGTCAGAA	0.328000													10	50					0	0	1	0	0
LMBRD1	55788	broad.mit.edu	37	6	70500257	70500257	+	Missense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr6:70500257G>C	uc003pfa.2	-	2	292	c.177C>G	c.(175-177)ATC>ATG	p.I59M	LMBRD1_uc003pez.2_Translation_Start_Site|LMBRD1_uc010kal.2_Translation_Start_Site|LMBRD1_uc003pfb.2_RNA	NM_018368	NP_060838	Q9NUN5	LMBD1_HUMAN	liver regeneration p-53 related protein	59	Helical; Name=2; (Potential).				interspecies interaction between organisms|transport	integral to membrane|lysosomal membrane	cobalamin binding			ovary(1)	1						GTGCTGATGTGATAAGTGCAA	0.338000													13	59					0	0	1	0	0
RARS2	57038	broad.mit.edu	37	6	88265199	88265199	+	Missense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr6:88265199C>G	uc003pme.2	-	5	382	c.322G>C	c.(322-324)GAT>CAT	p.D108H	RARS2_uc003pmb.2_5'UTR|RARS2_uc003pmc.2_5'UTR|RARS2_uc003pmd.2_5'UTR|RARS2_uc003pmf.2_RNA	NM_020320	NP_064716	Q5T160	SYRM_HUMAN	arginyl-tRNA synthetase 2, mitochondrial	108					arginyl-tRNA aminoacylation	mitochondrial matrix	arginine-tRNA ligase activity|ATP binding|protein binding			ovary(2)|central_nervous_system(1)	3		all_cancers(76;3.93e-06)|Acute lymphoblastic leukemia(125;3.55e-10)|Prostate(29;3.51e-09)|all_hematologic(105;3.29e-06)|all_epithelial(107;0.00575)		BRCA - Breast invasive adenocarcinoma(108;0.0456)		TTTGAGCCATCTTCAATTACT	0.338000													11	46					0	0	1	0	0
PM20D2	135293	broad.mit.edu	37	6	89862863	89862863	+	Missense_Mutation	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr6:89862863C>T	uc003pmz.2	+	3	811	c.716C>T	c.(715-717)TCT>TTT	p.S239F		NM_001010853	NP_001010853	Q8IYS1	P20D2_HUMAN	aminoacylase 1-like 2	239							hydrolase activity				0		all_cancers(76;9.47e-09)|Prostate(29;1.16e-10)|Acute lymphoblastic leukemia(125;1.45e-10)|all_hematologic(105;7.74e-07)|all_epithelial(107;0.000114)		BRCA - Breast invasive adenocarcinoma(108;0.00813)		AACAATCTGTCTGTGTTCAGA	0.398000													19	80					0	0	1	0	0
GABRR1	2569	broad.mit.edu	37	6	89895170	89895170	+	Splice_Site	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr6:89895170C>T	uc003pna.2	-	7	1111	c.656_splice	c.e7-1	p.Y219_splice	GABRR1_uc011dzv.1_Splice_Site_p.Y196_splice	NM_002042	NP_002033	P24046	GBRR1_HUMAN	gamma-aminobutyric acid (GABA) receptor, rho 1						gamma-aminobutyric acid signaling pathway|synaptic transmission	cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	chloride channel activity|extracellular ligand-gated ion channel activity|GABA-A receptor activity			pancreas(1)	1		all_cancers(76;9.49e-09)|Prostate(29;1.16e-10)|Acute lymphoblastic leukemia(125;1.46e-10)|all_hematologic(105;7.74e-07)|all_epithelial(107;0.000114)		BRCA - Breast invasive adenocarcinoma(108;0.00917)	Picrotoxin(DB00466)	GTATAGGCATCTGAAAAGACA	0.498000													23	130					0	0	1	0	0
KIAA0776	23376	broad.mit.edu	37	6	96971061	96971061	+	Silent	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr6:96971061G>A	uc003por.2	+	2	165	c.117G>A	c.(115-117)TTG>TTA	p.L39L	KIAA0776_uc010kck.2_RNA	NM_015323	NP_056138	O94874	UFL1_HUMAN	hypothetical protein LOC23376	39	Required for E3 UFM1-protein ligase activity.				negative regulation of NF-kappaB transcription factor activity|negative regulation of protein ubiquitination|protein ufmylation	endoplasmic reticulum|nucleus	protein binding|UFM1 conjugating enzyme activity			ovary(1)	1		all_cancers(76;5.83e-05)|Acute lymphoblastic leukemia(125;7.02e-10)|all_hematologic(75;1.23e-06)|all_epithelial(107;0.0604)|Colorectal(196;0.0721)		BRCA - Breast invasive adenocarcinoma(108;0.0934)		TTAATAAATTGATTGCTCAGA	0.378000													22	103					0	0	1	0	0
SFRS18	25957	broad.mit.edu	37	6	99848496	99848496	+	Nonsense_Mutation	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr6:99848496G>A	uc003ppo.3	-	12	2566	c.2338C>T	c.(2338-2340)CGA>TGA	p.R780*	SFRS18_uc003ppl.2_Nonsense_Mutation_p.R326*|SFRS18_uc003ppp.3_Nonsense_Mutation_p.R780*|SFRS18_uc011eag.1_Nonsense_Mutation_p.R780*	NM_032870	NP_116259	Q8TF01	PNISR_HUMAN	splicing factor, arginine/serine-rich 130	780	Ser-rich.					nuclear speck					0		all_cancers(76;1.24e-06)|Acute lymphoblastic leukemia(125;4.99e-11)|all_hematologic(75;5.82e-08)|all_epithelial(107;0.00716)|Colorectal(196;0.0691)|Lung NSC(302;0.186)		BRCA - Breast invasive adenocarcinoma(108;0.0631)		GATCGCGATCGACTATGTTTA	0.413000													9	335					0	0	1	0	0
AIM1	202	broad.mit.edu	37	6	106960255	106960255	+	Silent	SNP	G	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr6:106960255G>T	uc003prh.2	+	1	526	c.39G>T	c.(37-39)CGG>CGT	p.R13R		NM_001624	NP_001615	Q9Y4K1	AIM1_HUMAN	absent in melanoma 1	13							sugar binding			breast(4)|ovary(2)|upper_aerodigestive_tract(1)|large_intestine(1)|skin(1)	9	Breast(9;0.0138)|all_epithelial(6;0.169)	all_cancers(87;4.67e-25)|all_epithelial(87;5.46e-21)|Acute lymphoblastic leukemia(125;2.15e-07)|all_hematologic(75;5.28e-06)|Colorectal(196;3.46e-05)|all_lung(197;5.94e-05)|Lung NSC(302;7.26e-05)|Ovarian(999;0.00473)	Epithelial(6;0.00114)|all cancers(7;0.00726)|BRCA - Breast invasive adenocarcinoma(8;0.0114)|OV - Ovarian serous cystadenocarcinoma(5;0.0305)	all cancers(137;1.73e-50)|Epithelial(106;2.42e-48)|OV - Ovarian serous cystadenocarcinoma(136;1.51e-27)|BRCA - Breast invasive adenocarcinoma(108;0.00104)|GBM - Glioblastoma multiforme(226;0.00858)		CGGGGAGGCGGAGGGGGTCGC	0.672000													4	8					0.00024832	0.000252469	1	1	0
BEND3	57673	broad.mit.edu	37	6	107390342	107390342	+	Missense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr6:107390342C>G	uc003prs.2	-	5	2703	c.2053G>C	c.(2053-2055)GAG>CAG	p.E685Q		NM_001080450	NP_001073919	Q5T5X7	BEND3_HUMAN	BEN domain containing 3	685										ovary(3)	3						GGGGGCCCCTCAAACTCCTCC	0.642000													3	116					0	0	1	0	0
NR2E1	7101	broad.mit.edu	37	6	108497812	108497812	+	Missense_Mutation	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr6:108497812C>T	uc003psg.2	+	4	1120	c.365C>T	c.(364-366)TCG>TTG	p.S122L		NM_003269	NP_003260	Q9Y466	NR2E1_HUMAN	nuclear receptor subfamily 2, group E, member 1	122					regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	nucleoplasm	sequence-specific DNA binding|steroid hormone receptor activity|zinc ion binding			central_nervous_system(1)|skin(1)	2		all_cancers(87;8.13e-05)|Acute lymphoblastic leukemia(125;3.07e-08)|all_hematologic(75;3.33e-06)|all_epithelial(87;0.00866)|Colorectal(196;0.0637)		BRCA - Breast invasive adenocarcinoma(108;0.013)|Epithelial(106;0.0521)|all cancers(137;0.068)|OV - Ovarian serous cystadenocarcinoma(136;0.0689)		CACTTTCCCTCGGCGGCGCTC	0.711000													13	46					0	0	1	0	0
FIG4	9896	broad.mit.edu	37	6	110037666	110037666	+	Missense_Mutation	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr6:110037666G>A	uc003ptt.2	+	3	399	c.184G>A	c.(184-186)GAA>AAA	p.E62K	FIG4_uc011eau.1_Intron	NM_014845	NP_055660	Q92562	FIG4_HUMAN	Sac domain-containing inositol phosphatase 3	62					cell death	endosome membrane	protein binding			ovary(1)	1		all_cancers(87;8.63e-07)|Acute lymphoblastic leukemia(125;2.66e-08)|all_hematologic(75;1.13e-06)|all_epithelial(87;0.000124)|all_lung(197;0.0187)|Colorectal(196;0.0492)|Lung SC(18;0.0548)		OV - Ovarian serous cystadenocarcinoma(136;0.0355)|Epithelial(106;0.038)|all cancers(137;0.0425)|BRCA - Breast invasive adenocarcinoma(108;0.079)		TACTCAACAAGAAGTAAGGGA	0.373000													20	62					0	0	1	0	0
LAMA4	3910	broad.mit.edu	37	6	112439102	112439102	+	Splice_Site	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr6:112439102C>G	uc003pvu.2	-	35	5131	c.4822_splice	c.e35-1	p.I1608_splice	LAMA4_uc003pvv.2_Splice_Site_p.I1601_splice|LAMA4_uc003pvt.2_Splice_Site_p.I1601_splice	NM_001105206	NP_001098676	Q16363	LAMA4_HUMAN	laminin, alpha 4 isoform 1 precursor						cell adhesion|regulation of cell adhesion|regulation of cell migration|regulation of embryonic development	laminin-1 complex	extracellular matrix structural constituent|receptor binding			ovary(4)|breast(2)|large_intestine(1)|central_nervous_system(1)|pancreas(1)	9		all_cancers(87;0.000196)|all_hematologic(75;0.000114)|all_epithelial(87;0.00542)|Colorectal(196;0.0209)		all cancers(137;0.0335)|OV - Ovarian serous cystadenocarcinoma(136;0.0578)|Epithelial(106;0.0748)|BRCA - Breast invasive adenocarcinoma(108;0.242)		TGGAGTTAATCTGAGGGAAGA	0.448000													12	37					0	0	1	0	0
GPRC6A	222545	broad.mit.edu	37	6	117113846	117113846	+	Missense_Mutation	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr6:117113846C>T	uc003pxj.1	-	6	2262	c.2240G>A	c.(2239-2241)GGA>GAA	p.G747E	GPRC6A_uc003pxk.1_Missense_Mutation_p.G572E|GPRC6A_uc003pxl.1_Missense_Mutation_p.G676E	NM_148963	NP_683766	Q5T6X5	GPC6A_HUMAN	G protein-coupled receptor, family C, group 6,	747	Extracellular (Potential).				response to amino acid stimulus		G-protein coupled receptor activity			ovary(4)|skin(2)	6		all_cancers(87;0.0314)|all_epithelial(87;0.0216)|Colorectal(196;0.234)		GBM - Glioblastoma multiforme(226;0.0265)|all cancers(137;0.0554)|OV - Ovarian serous cystadenocarcinoma(136;0.07)		AAGTATGGATCCCTCCTCACA	0.453000													12	47					0	0	1	0	0
MCM9	254394	broad.mit.edu	37	6	119245096	119245096	+	Silent	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr6:119245096G>A	uc003pyh.2	-	3	764	c.501C>T	c.(499-501)TGC>TGT	p.C167C		NM_153255	NP_694987	Q9NXL9	MCM9_HUMAN	minichromosome maintenance complex component 9	167					DNA replication		ATP binding|DNA binding|nucleoside-triphosphatase activity			ovary(1)	1		all_cancers(87;0.122)|all_epithelial(87;0.179)		GBM - Glioblastoma multiforme(226;0.0676)|OV - Ovarian serous cystadenocarcinoma(136;0.194)		AGGATGGCCGGCAAAAGGTGT	0.483000													5	127					0	0	1	0	0
GJA1	2697	broad.mit.edu	37	6	121768311	121768311	+	Silent	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr6:121768311G>A	uc003pyr.2	+	2	568	c.318G>A	c.(316-318)CTG>CTA	p.L106L	GJA1_uc011ebo.1_Silent_p.L7L|GJA1_uc011ebp.1_Intron	NM_000165	NP_000156	P17302	CXA1_HUMAN	connexin 43	106	Cytoplasmic (Potential).		L -> P (in ODDD).		cell-cell signaling|cellular membrane organization|gap junction assembly|heart development|muscle contraction|positive regulation of I-kappaB kinase/NF-kappaB cascade	connexon complex|Golgi-associated vesicle membrane|integral to plasma membrane|membrane raft	ion transmembrane transporter activity|signal transducer activity			ovary(2)	2				GBM - Glioblastoma multiforme(226;0.00252)	Carvedilol(DB01136)	AAGAGAAACTGAACAAGAAAG	0.443000													22	77					0	0	1	0	0
GJA1	2697	broad.mit.edu	37	6	121768436	121768436	+	Missense_Mutation	SNP	G	A	A	rs138250981	by1000genomes	TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr6:121768436G>A	uc003pyr.2	+	2	693	c.443G>A	c.(442-444)CGA>CAA	p.R148Q	GJA1_uc011ebo.1_Missense_Mutation_p.R49Q|GJA1_uc011ebp.1_Intron	NM_000165	NP_000156	P17302	CXA1_HUMAN	connexin 43	148	Cytoplasmic (Potential).				cell-cell signaling|cellular membrane organization|gap junction assembly|heart development|muscle contraction|positive regulation of I-kappaB kinase/NF-kappaB cascade	connexon complex|Golgi-associated vesicle membrane|integral to plasma membrane|membrane raft	ion transmembrane transporter activity|signal transducer activity			ovary(2)	2				GBM - Glioblastoma multiforme(226;0.00252)	Carvedilol(DB01136)	GTGAAAATGCGAGGGGGGTTG	0.453000													23	121					0	0	1	0	0
RSPO3	84870	broad.mit.edu	37	6	127469843	127469843	+	Missense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr6:127469843G>C	uc003qar.2	+	2	438	c.148G>C	c.(148-150)GAT>CAT	p.D50H	RSPO3_uc003qas.1_Missense_Mutation_p.D50H	NM_032784	NP_116173	Q9BXY4	RSPO3_HUMAN	R-spondin 3 precursor	50	FU 1.					extracellular region	heparin binding				0				GBM - Glioblastoma multiforme(226;0.0555)		AACATGCTCAGATTACAATGG	0.413000													26	94					0	0	1	0	0
THEMIS	387357	broad.mit.edu	37	6	128150975	128150975	+	Missense_Mutation	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr6:128150975G>A	uc003qbi.2	-	4	674	c.355C>T	c.(355-357)CAT>TAT	p.H119Y	THEMIS_uc010kfa.2_Missense_Mutation_p.H22Y|THEMIS_uc011ebt.1_Missense_Mutation_p.H119Y|THEMIS_uc010kfb.2_Missense_Mutation_p.H84Y	NM_001010923	NP_001010923	Q8N1K5	THMS1_HUMAN	thymocyte selection pathway associated isoform	119	CABIT 1.				negative T cell selection|positive T cell selection|T cell receptor signaling pathway	cytoplasm|nucleus				ovary(2)|skin(2)	4						TCCTTCTGATGATAGAAGCAA	0.388000													33	114					0	0	1	0	0
L3MBTL3	84456	broad.mit.edu	37	6	130374065	130374065	+	Silent	SNP	C	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr6:130374065C>A	uc003qbt.2	+	7	681	c.511C>A	c.(511-513)CGG>AGG	p.R171R	L3MBTL3_uc003qbu.2_Silent_p.R146R	NM_032438	NP_115814	Q96JM7	LMBL3_HUMAN	l(3)mbt-like 3 isoform a	171					chromatin modification|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus				ovary(5)|skin(1)	6				GBM - Glioblastoma multiforme(226;0.0266)|OV - Ovarian serous cystadenocarcinoma(155;0.154)		TAAGTGTAGTCGGAAGAAAAA	0.423000													16	39					6.49762e-13	6.7454e-13	1	1	0
TAAR6	319100	broad.mit.edu	37	6	132891552	132891552	+	Missense_Mutation	SNP	C	T	T	rs150840737		TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr6:132891552C>T	uc011eck.1	+	1	92	c.92C>T	c.(91-93)TCC>TTC	p.S31F		NM_175067	NP_778237	Q96RI8	TAAR6_HUMAN	trace amine associated receptor 6	31	Extracellular (Potential).					plasma membrane	G-protein coupled receptor activity			ovary(2)|skin(1)	3	Breast(56;0.112)			OV - Ovarian serous cystadenocarcinoma(155;0.006)|GBM - Glioblastoma multiforme(226;0.00792)		TCGCCGGGATCCCGGGTGATT	0.527000													4	142					0	0	1	0	0
TAAR5	9038	broad.mit.edu	37	6	132910460	132910460	+	Silent	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr6:132910460G>A	uc003qdk.2	-	1	418	c.366C>T	c.(364-366)ATC>ATT	p.I122I		NM_003967	NP_003958	O14804	TAAR5_HUMAN	trace amine associated receptor 5	122	Helical; Name=3; (Potential).				synaptic transmission	integral to plasma membrane	G-protein coupled receptor activity			skin(1)	1	Breast(56;0.112)			OV - Ovarian serous cystadenocarcinoma(155;0.00604)|GBM - Glioblastoma multiforme(226;0.015)		AGAGATGGAAGATGGAGGTGA	0.572000													27	93					0	0	1	0	0
TCF21	6943	broad.mit.edu	37	6	134210781	134210781	+	Silent	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr6:134210781C>T	uc003qei.3	+	1	522	c.246C>T	c.(244-246)AAC>AAT	p.N82N	uc003qeg.1_5'Flank|TCF21_uc003qej.2_Silent_p.N82N	NM_003206	NP_003197	O43680	TCF21_HUMAN	transcription factor 21	82	Basic motif.				branching involved in ureteric bud morphogenesis|mesoderm development|negative regulation of androgen receptor signaling pathway|negative regulation of transcription from RNA polymerase II promoter|positive regulation of transcription, DNA-dependent	nucleus	androgen receptor binding|E-box binding|protein dimerization activity|sequence-specific DNA binding transcription factor activity				0	Colorectal(23;0.221)|Breast(56;0.247)			GBM - Glioblastoma multiforme(68;0.00518)|OV - Ovarian serous cystadenocarcinoma(155;0.00783)		TCCAGCGCAACGCCGCCAACG	0.701000													30	58					0	0	1	0	0
ALDH8A1	64577	broad.mit.edu	37	6	135239582	135239582	+	Missense_Mutation	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr6:135239582C>T	uc003qew.2	-	7	1488	c.1435G>A	c.(1435-1437)GAG>AAG	p.E479K	ALDH8A1_uc003qex.2_Missense_Mutation_p.E425K|ALDH8A1_uc010kgh.2_Missense_Mutation_p.E257K|ALDH8A1_uc011ecx.1_Missense_Mutation_p.E429K	NM_022568	NP_072090	Q9H2A2	AL8A1_HUMAN	aldehyde dehydrogenase 8A1 isoform 1	479					retinal metabolic process	cytoplasm	retinal dehydrogenase activity			ovary(2)|pancreas(1)|skin(1)	4	Colorectal(23;0.221)			OV - Ovarian serous cystadenocarcinoma(155;0.00401)|GBM - Glioblastoma multiforme(68;0.0058)		GTTTTGATCTCAGTGAAGAAG	0.493000													17	65					0	0	1	0	0
MAP3K5	4217	broad.mit.edu	37	6	136934380	136934380	+	Missense_Mutation	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr6:136934380G>A	uc003qhc.2	-	17	2654	c.2293C>T	c.(2293-2295)CTC>TTC	p.L765F	MAP3K5_uc011edj.1_Missense_Mutation_p.L12F|MAP3K5_uc011edk.1_Missense_Mutation_p.L610F	NM_005923	NP_005914	Q99683	M3K5_HUMAN	mitogen-activated protein kinase kinase kinase	765	Protein kinase.				activation of JUN kinase activity|activation of MAPKK activity|cellular response to hydrogen peroxide|induction of apoptosis by extracellular signals|interspecies interaction between organisms		ATP binding|caspase activator activity|magnesium ion binding|MAP kinase kinase kinase activity|protein homodimerization activity|protein phosphatase binding			ovary(2)|skin(2)|lung(1)	5	Colorectal(23;0.24)			GBM - Glioblastoma multiforme(68;0.00137)|OV - Ovarian serous cystadenocarcinoma(155;0.00569)		GAACGAAGGAGAGCAGAAAGA	0.318000													18	57					0	0	1	0	0
PERP	64065	broad.mit.edu	37	6	138428294	138428294	+	Missense_Mutation	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr6:138428294C>T	uc003qht.2	-	1	367	c.184G>A	c.(184-186)GAG>AAG	p.E62K		NM_022121	NP_071404	Q96FX8	PERP_HUMAN	PERP, TP53 apoptosis effector	62					apoptosis|cell adhesion	desmosome|Golgi apparatus|integral to membrane|nucleus					0	Breast(32;0.0799)|Colorectal(23;0.24)			GBM - Glioblastoma multiforme(68;0.000878)|OV - Ovarian serous cystadenocarcinoma(155;0.000997)		CAGCCCTCCTCGTAGGACCCG	0.617000													15	51					0	0	1	0	0
TXLNB	167838	broad.mit.edu	37	6	139564197	139564197	+	Silent	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr6:139564197G>A	uc011eds.1	-	10	1686	c.1521C>T	c.(1519-1521)TTC>TTT	p.F507F		NM_153235	NP_694967	Q8N3L3	TXLNB_HUMAN	taxilin beta	507						cytoplasm				large_intestine(1)|ovary(1)	2				OV - Ovarian serous cystadenocarcinoma(155;0.000185)|GBM - Glioblastoma multiforme(68;0.000235)		GAATTATCATGAAGGCTGTGG	0.512000													7	253					0	0	1	0	0
TXLNB	167838	broad.mit.edu	37	6	139583895	139583895	+	Missense_Mutation	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr6:139583895G>A	uc011eds.1	-	5	868	c.703C>T	c.(703-705)CGG>TGG	p.R235W		NM_153235	NP_694967	Q8N3L3	TXLNB_HUMAN	taxilin beta	235	Potential.					cytoplasm				large_intestine(1)|ovary(1)	2				OV - Ovarian serous cystadenocarcinoma(155;0.000185)|GBM - Glioblastoma multiforme(68;0.000235)		TCACGTGCCCGCTGAAGCGCC	0.478000													21	77					0	0	1	0	0
PHACTR2	9749	broad.mit.edu	37	6	144086865	144086865	+	Missense_Mutation	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr6:144086865G>A	uc003qjq.3	+	6	1259	c.1129G>A	c.(1129-1131)GAA>AAA	p.E377K	PHACTR2_uc010khh.2_Missense_Mutation_p.E297K|PHACTR2_uc010khi.2_Missense_Mutation_p.E388K|PHACTR2_uc003qjr.3_Missense_Mutation_p.E308K	NM_014721	NP_055536	O75167	PHAR2_HUMAN	phosphatase and actin regulator 2 isoform 3	377							actin binding|protein phosphatase inhibitor activity			ovary(2)	2				OV - Ovarian serous cystadenocarcinoma(155;1.58e-05)|GBM - Glioblastoma multiforme(68;0.0386)		TCTTTGGGCTGAAGAGCCGAC	0.502000													40	133					0	0	1	0	0
LATS1	9113	broad.mit.edu	37	6	150004621	150004621	+	Missense_Mutation	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr6:150004621C>T	uc003qmu.1	-	4	2152	c.1604G>A	c.(1603-1605)GGA>GAA	p.G535E	LATS1_uc010kif.1_Missense_Mutation_p.G430E|LATS1_uc003qmv.1_Missense_Mutation_p.G535E|LATS1_uc003qmw.2_Missense_Mutation_p.G535E|LATS1_uc010kig.1_Missense_Mutation_p.G430E	NM_004690	NP_004681	O95835	LATS1_HUMAN	LATS homolog 1	535	Interaction with YAP1.				cell division|cytoplasmic sequestering of protein|G2/M transition of mitotic cell cycle|hippo signaling cascade|hormone-mediated signaling pathway|mitosis|negative regulation of canonical Wnt receptor signaling pathway|negative regulation of cyclin-dependent protein kinase activity|positive regulation of peptidyl-serine phosphorylation|regulation of actin filament polymerization|sister chromatid segregation	microtubule organizing center|spindle pole	ATP binding|magnesium ion binding|protein kinase binding|protein serine/threonine kinase activity			lung(5)|central_nervous_system(1)	6		Ovarian(120;0.0164)		OV - Ovarian serous cystadenocarcinoma(155;6.93e-13)|GBM - Glioblastoma multiforme(68;0.116)		TGAAGCGGTTCCCTCAGGAAA	0.483000													25	121					0	0	1	0	0
RAET1E	135250	broad.mit.edu	37	6	150210680	150210680	+	Silent	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr6:150210680G>C	uc003qnl.1	-	3	486	c.426C>G	c.(424-426)ACC>ACG	p.T142T	uc003qni.1_Intron|RAET1E_uc003qnj.2_Silent_p.T142T|RAET1E_uc003qnk.1_Silent_p.T106T|RAET1E_uc010kih.1_RNA	NM_139165	NP_631904	Q8TD07	N2DL4_HUMAN	retinoic acid early transcript 1E precursor	142	Extracellular (Potential).|MHC class I alpha-2 like.			AT -> TI (in Ref. 7; AAL76417).	antigen processing and presentation|immune response|regulation of immune response	integral to membrane|MHC class I protein complex	protein binding				0		Ovarian(120;0.0907)	BRCA - Breast invasive adenocarcinoma(37;0.193)	OV - Ovarian serous cystadenocarcinoma(155;2.58e-12)		TCTCTCCATTGGTGGCGAACT	0.473000													30	95					0	0	1	0	0
ULBP2	80328	broad.mit.edu	37	6	150266620	150266620	+	Missense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr6:150266620G>C	uc003qno.2	+	2	334	c.261G>C	c.(259-261)TGG>TGC	p.W87C	ULBP2_uc011eeh.1_Missense_Mutation_p.W87C|ULBP2_uc010kij.2_Missense_Mutation_p.W87C	NM_025217	NP_079493	Q9BZM5	N2DL2_HUMAN	UL16 binding protein 2 precursor	87	MHC class I alpha-1 like.				antigen processing and presentation|immune response|natural killer cell activation|regulation of immune response	anchored to membrane|cell surface|extracellular space|MHC class I protein complex	MHC class I receptor activity				0		Ovarian(120;0.0907)	BRCA - Breast invasive adenocarcinoma(37;0.193)	OV - Ovarian serous cystadenocarcinoma(155;2.58e-12)		CAACGGCCTGGAAAGCACAGA	0.483000													50	237					0	0	1	0	0
C6orf211	79624	broad.mit.edu	37	6	151789691	151789691	+	Missense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr6:151789691G>C	uc003qok.1	+	5	1031	c.772G>C	c.(772-774)GAG>CAG	p.E258Q	C6orf211_uc011ees.1_Missense_Mutation_p.E139Q	NM_024573	NP_078849	Q9H993	CF211_HUMAN	hypothetical protein LOC79624	258							protein binding				0			BRCA - Breast invasive adenocarcinoma(37;0.183)	OV - Ovarian serous cystadenocarcinoma(155;5.27e-11)		TTCTGGATTTGAGCTTGTTAC	0.353000													43	151					0	0	1	0	0
ESR1	2099	broad.mit.edu	37	6	152332810	152332810	+	Silent	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr6:152332810C>G	uc003qom.3	+	7	1486	c.1116C>G	c.(1114-1116)CTC>CTG	p.L372L	ESR1_uc010kin.2_Silent_p.L372L|ESR1_uc010kio.2_Silent_p.L374L|ESR1_uc010kip.2_Silent_p.L371L|ESR1_uc003qon.3_Silent_p.L372L|ESR1_uc003qoo.3_Silent_p.L372L|ESR1_uc010kiq.2_Intron|ESR1_uc010kir.2_Intron|ESR1_uc011eet.1_Intron|ESR1_uc011eeu.1_Intron|ESR1_uc011eev.1_Intron|ESR1_uc011eew.1_Intron|ESR1_uc010kis.2_Silent_p.L41L|ESR1_uc011eex.1_Silent_p.L153L|ESR1_uc010kit.1_Intron|ESR1_uc011eey.1_Silent_p.L109L	NM_001122742	NP_001116214	P03372	ESR1_HUMAN	estrogen receptor alpha isoform 4	372	Steroid-binding.|Interaction with AKAP13.				positive regulation of retinoic acid receptor signaling pathway|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor|response to estradiol stimulus	chromatin remodeling complex|cytoplasm|nucleoplasm	beta-catenin binding|enzyme binding|estrogen receptor activity|estrogen response element binding|nitric-oxide synthase regulator activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|steroid binding|zinc ion binding			central_nervous_system(2)|ovary(1)|lung(1)|breast(1)	5		Ovarian(120;0.0448)	BRCA - Breast invasive adenocarcinoma(37;0.0841)	OV - Ovarian serous cystadenocarcinoma(155;4.55e-10)	Chlorotrianisene(DB00269)|Clomifene(DB00882)|Conjugated Estrogens(DB00286)|Danazol(DB01406)|Desogestrel(DB00304)|Dienestrol(DB00890)|Diethylstilbestrol(DB00255)|Dromostanolone(DB00858)|Drospirenone(DB01395)|Estradiol(DB00783)|Estramustine(DB01196)|Estriol(DB04573)|Estrone(DB00655)|Ethinyl Estradiol(DB00977)|Ethynodiol Diacetate(DB00823)|Etonogestrel(DB00294)|Fluoxymesterone(DB01185)|Fulvestrant(DB00947)|Letrozole(DB01006)|Levonorgestrel(DB00367)|Medroxyprogesterone(DB00603)|Megestrol(DB00351)|Melatonin(DB01065)|Mestranol(DB01357)|Naloxone(DB01183)|Norgestimate(DB00957)|Norgestrel(DB00506)|Progesterone(DB00396)|Quinestrol(DB04575)|Raloxifene(DB00481)|Tamoxifen(DB00675)|Toremifene(DB00539)	ATTTGACCCTCCATGATCAGG	0.463000													27	155					0	0	1	0	0
SYNE1	23345	broad.mit.edu	37	6	152740727	152740727	+	Nonsense_Mutation	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr6:152740727G>A	uc010kiw.2	-	40	6000	c.5398C>T	c.(5398-5400)CAA>TAA	p.Q1800*	SYNE1_uc003qot.3_Nonsense_Mutation_p.Q1807*|SYNE1_uc003qou.3_Nonsense_Mutation_p.Q1800*|SYNE1_uc010kjb.1_Nonsense_Mutation_p.Q1783*	NM_182961	NP_892006	Q8NF91	SYNE1_HUMAN	spectrin repeat containing, nuclear envelope 1	1800	Cytoplasmic (Potential).				cell death|cytoskeletal anchoring at nuclear membrane|Golgi organization|muscle cell differentiation|nuclear matrix anchoring at nuclear membrane	cytoskeleton|Golgi apparatus|integral to membrane|nuclear outer membrane|postsynaptic membrane|sarcomere|SUN-KASH complex	actin binding|lamin binding			central_nervous_system(15)|upper_aerodigestive_tract(9)|ovary(8)|skin(6)|large_intestine(5)|pancreas(2)	45		Ovarian(120;0.0955)	BRCA - Breast invasive adenocarcinoma(37;0.243)	OV - Ovarian serous cystadenocarcinoma(155;2.24e-10)		AGGGCTACTTGATGGTCCATT	0.338000										HNSCC(10;0.0054)			5	56					0	0	1	0	0
SYNE1	23345	broad.mit.edu	37	6	152783910	152783910	+	Missense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr6:152783910G>C	uc010kiw.2	-	20	2815	c.2213C>G	c.(2212-2214)TCT>TGT	p.S738C	SYNE1_uc003qot.3_Missense_Mutation_p.S745C|SYNE1_uc003qou.3_Missense_Mutation_p.S738C|SYNE1_uc010kjb.1_Missense_Mutation_p.S721C|SYNE1_uc003qpa.1_Missense_Mutation_p.S738C|SYNE1_uc003qow.2_Missense_Mutation_p.S33C|SYNE1_uc003qox.1_Missense_Mutation_p.S254C|SYNE1_uc003qoz.2_Missense_Mutation_p.S170C|SYNE1_uc003qoy.2_Missense_Mutation_p.S305C	NM_182961	NP_892006	Q8NF91	SYNE1_HUMAN	spectrin repeat containing, nuclear envelope 1	738	Cytoplasmic (Potential).				cell death|cytoskeletal anchoring at nuclear membrane|Golgi organization|muscle cell differentiation|nuclear matrix anchoring at nuclear membrane	cytoskeleton|Golgi apparatus|integral to membrane|nuclear outer membrane|postsynaptic membrane|sarcomere|SUN-KASH complex	actin binding|lamin binding			central_nervous_system(15)|upper_aerodigestive_tract(9)|ovary(8)|skin(6)|large_intestine(5)|pancreas(2)	45		Ovarian(120;0.0955)	BRCA - Breast invasive adenocarcinoma(37;0.243)	OV - Ovarian serous cystadenocarcinoma(155;2.24e-10)		ATTCATAAAAGAGACTTCTAA	0.403000										HNSCC(10;0.0054)			30	80					0	0	1	0	0
RGS17	26575	broad.mit.edu	37	6	153332811	153332811	+	Missense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr6:153332811C>G	uc003qpm.2	-	5	687	c.531G>C	c.(529-531)CAG>CAC	p.Q177H		NM_012419	NP_036551	Q9UGC6	RGS17_HUMAN	regulator of G-protein signalling 17	177	RGS.				negative regulation of signal transduction	cytoplasm|nucleus|plasma membrane	GTPase activator activity|signal transducer activity			pancreas(1)	1		Ovarian(120;0.126)		OV - Ovarian serous cystadenocarcinoma(155;1.09e-09)|BRCA - Breast invasive adenocarcinoma(81;0.0429)		AAGTATATATCTGAAGTTGGG	0.353000									Lung_Cancer_Familial_Clustering_of				28	78					0	0	1	0	0
NOX3	50508	broad.mit.edu	37	6	155750143	155750143	+	Missense_Mutation	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr6:155750143C>T	uc003qqm.2	-	9	1033	c.930G>A	c.(928-930)ATG>ATA	p.M310I		NM_015718	NP_056533	Q9HBY0	NOX3_HUMAN	NADPH oxidase 3	310	Extracellular (Potential).|FAD-binding FR-type.						electron carrier activity|flavin adenine dinucleotide binding|iron ion binding			ovary(1)	1		Breast(66;0.0183)		OV - Ovarian serous cystadenocarcinoma(155;2.18e-12)|BRCA - Breast invasive adenocarcinoma(81;0.00815)		CACGCTTTTTCATGTGAAGTT	0.502000													35	117					0	0	1	0	0
MRPL18	29074	broad.mit.edu	37	6	160219111	160219111	+	Missense_Mutation	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr6:160219111G>A	uc003qsw.3	+	4	627	c.499G>A	c.(499-501)GAA>AAA	p.E167K	MRPL18_uc010kkb.2_RNA|PNLDC1_uc003qsx.1_5'Flank|PNLDC1_uc003qsy.1_5'Flank	NM_014161	NP_054880	Q9H0U6	RM18_HUMAN	mitochondrial ribosomal protein L18 precursor	167					rRNA transport|translation	mitochondrial ribosome	5S rRNA binding|structural constituent of ribosome				0		Breast(66;0.000776)|Ovarian(120;0.0303)		OV - Ovarian serous cystadenocarcinoma(65;1.44e-18)|BRCA - Breast invasive adenocarcinoma(81;5.79e-06)		TGCCATGACAGAAGGTGGTGT	0.378000													14	53					0	0	1	0	0
RPS6KA2	6196	broad.mit.edu	37	6	166918098	166918098	+	Silent	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr6:166918098G>C	uc003qvb.1	-	6	681	c.462C>G	c.(460-462)GTC>GTG	p.V154V	RPS6KA2_uc011ego.1_Silent_p.V65V|RPS6KA2_uc010kkl.1_Silent_p.V65V|RPS6KA2_uc003qvc.1_Silent_p.V162V|RPS6KA2_uc003qvd.1_Silent_p.V179V	NM_021135	NP_066958	Q15349	KS6A2_HUMAN	ribosomal protein S6 kinase, 90kDa, polypeptide	154	Protein kinase 1.				axon guidance|innate immune response|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|nerve growth factor receptor signaling pathway|stress-activated MAPK cascade|synaptic transmission|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	cytosol|nucleoplasm	ATP binding|magnesium ion binding|protein serine/threonine kinase activity			ovary(2)|lung(2)|skin(2)|large_intestine(1)|central_nervous_system(1)	8		Breast(66;2.04e-05)|Ovarian(120;0.0652)|Prostate(117;0.105)		OV - Ovarian serous cystadenocarcinoma(33;2.76e-18)|GBM - Glioblastoma multiforme(31;9.94e-06)|BRCA - Breast invasive adenocarcinoma(81;1.36e-05)		CCGTGAACATGACCTAGTAAG	0.423000													31	111					0	0	1	0	0
MLLT4	4301	broad.mit.edu	37	6	168307902	168307902	+	Missense_Mutation	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr6:168307902G>A	uc003qwd.2	+	13	1841	c.1699G>A	c.(1699-1701)GAG>AAG	p.E567K	MLLT4_uc003qwb.1_Missense_Mutation_p.E552K|MLLT4_uc003qwc.1_Missense_Mutation_p.E568K|MLLT4_uc003qwf.2_Missense_Mutation_p.E253K	NM_001040001	NP_001035090	P55196	AFAD_HUMAN	myeloid/lymphoid or mixed-lineage leukemia	568					adherens junction organization|cell adhesion|cell junction assembly|cell-cell signaling|signal transduction	adherens junction|cell-cell junction|cytosol|nucleus	protein C-terminus binding			ovary(2)|lung(1)|kidney(1)|central_nervous_system(1)	5		Breast(66;1.07e-05)|Ovarian(120;0.024)		Epithelial(4;2.38e-32)|OV - Ovarian serous cystadenocarcinoma(33;9.99e-23)|BRCA - Breast invasive adenocarcinoma(4;1.2e-11)|GBM - Glioblastoma multiforme(31;0.00117)		TAGCACAGCCGAGCGGGGAAT	0.507000			T	MLL	AL								3	39					0	0	1	0	0
FOXK1	221937	broad.mit.edu	37	7	4780530	4780530	+	Missense_Mutation	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr7:4780530G>A	uc003snc.1	+	2	632	c.622G>A	c.(622-624)GAA>AAA	p.E208K	FOXK1_uc003sna.1_Missense_Mutation_p.E45K|FOXK1_uc003snb.1_Missense_Mutation_p.E208K	NM_001037165	NP_001032242	P85037	FOXK1_HUMAN	forkhead box K1	208					cell differentiation|embryo development|muscle organ development|pattern specification process|regulation of sequence-specific DNA binding transcription factor activity|tissue development	transcription factor complex	DNA bending activity|double-stranded DNA binding|magnesium ion binding|promoter binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription activator activity|transcription factor binding			upper_aerodigestive_tract(1)|skin(1)	2		Ovarian(82;0.0175)		UCEC - Uterine corpus endometrioid carcinoma (126;0.101)|OV - Ovarian serous cystadenocarcinoma(56;7.43e-15)		CTATCACAAAGAAGAGGCCCC	0.627000													72	251					0	0	1	0	0
WIPI2	26100	broad.mit.edu	37	7	5262289	5262289	+	Silent	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr7:5262289G>A	uc003snv.2	+	8	942	c.726G>A	c.(724-726)CGG>CGA	p.R242R	WIPI2_uc003snw.2_Silent_p.R242R|WIPI2_uc003snx.2_Silent_p.R224R|WIPI2_uc003sny.2_Silent_p.R224R|WIPI2_uc010ksv.2_Silent_p.R98R|WIPI2_uc003soa.2_Silent_p.R183R|WIPI2_uc003sob.2_5'UTR	NM_015610	NP_056425	Q9Y4P8	WIPI2_HUMAN	WD repeat domain, phosphoinositide interacting 2	242					autophagic vacuole assembly	cytosol|PAS complex|pre-autophagosomal structure membrane	phosphatidylinositol-3,5-bisphosphate binding|phosphatidylinositol-3-phosphate binding			ovary(2)	2		Ovarian(82;0.0175)		UCEC - Uterine corpus endometrioid carcinoma (126;0.0925)|OV - Ovarian serous cystadenocarcinoma(56;2.59e-14)		TTGAGTTTCGGAGAGGAGTAA	0.378000													7	271					0	0	1	0	0
SLC29A4	222962	broad.mit.edu	37	7	5331358	5331358	+	Silent	SNP	C	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr7:5331358C>A	uc003sod.2	+	5	611	c.450C>A	c.(448-450)ATC>ATA	p.I150I	SLC29A4_uc011jwg.1_Intron|SLC29A4_uc003soc.2_Silent_p.I150I|SLC29A4_uc003soe.2_Intron	NM_153247	NP_694979	Q7RTT9	S29A4_HUMAN	solute carrier family 29 (nucleoside	150	Helical; (Potential).				nucleobase, nucleoside and nucleotide metabolic process	apical plasma membrane|integral to membrane	nucleoside transmembrane transporter activity			liver(1)	1		Ovarian(82;0.0175)		UCEC - Uterine corpus endometrioid carcinoma (126;0.0903)|OV - Ovarian serous cystadenocarcinoma(56;2.65e-15)		TCCTTTTTATCAGCATCTGCG	0.637000													17	75					1.01871e-10	1.05071e-10	1	1	0
RAC1	5879	broad.mit.edu	37	7	6441588	6441588	+	Silent	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr7:6441588C>T	uc003spx.2	+	5	619	c.378C>T	c.(376-378)ATC>ATT	p.I126I	RAC1_uc003spw.2_Silent_p.I145I	NM_006908	NP_008839	P63000	RAC1_HUMAN	ras-related C3 botulinum toxin substrate 1	126					actin filament polymerization|apoptosis|axon guidance|cell motility|cell-matrix adhesion|induction of apoptosis by extracellular signals|inflammatory response|lamellipodium assembly|localization within membrane|negative regulation of interleukin-23 production|negative regulation of receptor-mediated endocytosis|nerve growth factor receptor signaling pathway|platelet activation|positive regulation of lamellipodium assembly|positive regulation of Rho protein signal transduction|regulation of cell migration|regulation of defense response to virus by virus|regulation of hydrogen peroxide metabolic process|regulation of respiratory burst|ruffle organization|small GTPase mediated signal transduction|T cell costimulation|viral reproduction	cytosol|melanosome|plasma membrane	GTP binding|GTP-dependent protein binding|GTPase activity|thioesterase binding			lung(2)	2		Ovarian(82;0.0776)		UCEC - Uterine corpus endometrioid carcinoma (126;0.104)	Pravastatin(DB00175)|Simvastatin(DB00641)	AAGACACGATCGAGAAACTGA	0.483000													30	98					0	0	1	0	0
ICA1	3382	broad.mit.edu	37	7	8268241	8268241	+	Missense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr7:8268241C>G	uc003srm.2	-	4	313	c.246G>C	c.(244-246)AAG>AAC	p.K82N	ICA1_uc010ktr.2_Missense_Mutation_p.K82N|ICA1_uc003srl.2_Missense_Mutation_p.K70N|ICA1_uc003srn.3_5'UTR|ICA1_uc003srp.3_Missense_Mutation_p.K81N|ICA1_uc010kts.2_RNA|ICA1_uc003srq.2_Missense_Mutation_p.K82N|ICA1_uc003srr.2_Missense_Mutation_p.K81N|ICA1_uc003sro.3_Missense_Mutation_p.K82N|ICA1_uc011jxg.1_Missense_Mutation_p.K82N|ICA1_uc003srs.1_Missense_Mutation_p.K82N	NM_022307	NP_071682	Q05084	ICA69_HUMAN	islet cell autoantigen 1	82	AH.				neurotransmitter transport	cell junction|cytosol|Golgi membrane|nucleus|secretory granule membrane|synaptic vesicle membrane|transport vesicle membrane				central_nervous_system(1)	1		Ovarian(82;0.0612)		UCEC - Uterine corpus endometrioid carcinoma (126;0.246)		AACATATCCTCTTTTGATAGA	0.303000													11	45					0	0	1	0	0
THSD7A	221981	broad.mit.edu	37	7	11446088	11446088	+	Missense_Mutation	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr7:11446088C>T	uc003ssf.3	-	21	4328	c.4076G>A	c.(4075-4077)GGA>GAA	p.G1359E		NM_015204	NP_056019	Q9UPZ6	THS7A_HUMAN	thrombospondin, type I, domain containing 7A	1359	TSP type-1 14.|Extracellular (Potential).					integral to membrane				ovary(3)	3				UCEC - Uterine corpus endometrioid carcinoma (126;0.163)		GGTCCCTTCTCCACACTGGGC	0.418000										HNSCC(18;0.044)			21	51					0	0	1	0	0
BZW2	28969	broad.mit.edu	37	7	16720997	16720997	+	Missense_Mutation	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr7:16720997G>A	uc003stl.2	+	4	485	c.307G>A	c.(307-309)GAA>AAA	p.E103K	BZW2_uc011jxx.1_5'UTR|BZW2_uc003stm.2_5'UTR|BZW2_uc003stj.2_Missense_Mutation_p.E103K|BZW2_uc003stk.2_Missense_Mutation_p.E27K|BZW2_uc003stn.1_Missense_Mutation_p.E103K|BZW2_uc003sto.1_5'UTR|BZW2_uc003stp.2_5'UTR|BZW2_uc010kua.2_Missense_Mutation_p.E103K	NM_001159767	NP_001153239	Q9Y6E2	BZW2_HUMAN	basic leucine zipper and W2 domains 2	103					cell differentiation|nervous system development|RNA metabolic process		protein binding			ovary(2)	2	Lung NSC(10;0.0367)|all_lung(11;0.0837)			UCEC - Uterine corpus endometrioid carcinoma (126;0.199)		TTCAGCAAATGAAGATCATGA	0.428000													12	36					0	0	1	0	0
HDAC9	9734	broad.mit.edu	37	7	18801829	18801829	+	Missense_Mutation	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr7:18801829C>T	uc003suh.2	+	14	2125	c.2084C>T	c.(2083-2085)TCT>TTT	p.S695F	HDAC9_uc003sue.2_Missense_Mutation_p.S695F|HDAC9_uc011jyd.1_Missense_Mutation_p.S695F|HDAC9_uc003sui.2_Missense_Mutation_p.S698F|HDAC9_uc003suj.2_Missense_Mutation_p.S654F|HDAC9_uc003sua.1_Missense_Mutation_p.S673F	NM_058176	NP_478056	Q9UKV0	HDAC9_HUMAN	histone deacetylase 9 isoform 1	695	Histone deacetylase.				B cell differentiation|cellular response to insulin stimulus|heart development|histone H3 deacetylation|histone H4 deacetylation|inflammatory response|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transcription, DNA-dependent|peptidyl-lysine deacetylation|positive regulation of cell migration involved in sprouting angiogenesis|regulation of skeletal muscle fiber development|transcription, DNA-dependent	cytoplasm|histone deacetylase complex|histone methyltransferase complex|transcription factor complex	histone deacetylase activity (H3-K16 specific)|histone deacetylase binding|histone deacetylase binding|NAD-dependent histone deacetylase activity (H3-K14 specific)|NAD-dependent histone deacetylase activity (H3-K9 specific)|NAD-dependent histone deacetylase activity (H4-K16 specific)|protein binding|protein kinase C binding|repressing transcription factor binding|transcription corepressor activity			lung(2)|central_nervous_system(2)|kidney(1)	5	all_lung(11;0.187)				Valproic Acid(DB00313)	CTTGTTCATTCTGAACATCAC	0.498000													4	43					0	0	1	0	0
DNAH11	8701	broad.mit.edu	37	7	21826259	21826259	+	Silent	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr7:21826259G>A	uc003svc.2	+	60	9667	c.9636G>A	c.(9634-9636)CTG>CTA	p.L3212L		NM_003777	NP_003768	Q96DT5	DYH11_HUMAN	dynein, axonemal, heavy chain 11	3212	Stalk (By similarity).				microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(8)|large_intestine(3)|pancreas(3)|central_nervous_system(1)	15						TCAGTGAGCTGAAAGCCTTTC	0.517000									Kartagener_syndrome				44	99					0	0	1	0	0
HOXA2	3199	broad.mit.edu	37	7	27140514	27140514	+	Missense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr7:27140514G>C	uc003syh.2	-	2	1237	c.962C>G	c.(961-963)TCT>TGT	p.S321C		NM_006735	NP_006726	O43364	HXA2_HUMAN	homeobox A2	321						nucleus	sequence-specific DNA binding transcription factor activity			ovary(1)|skin(1)	2						GTCCTGCAAAGAGGGGACCTC	0.527000													24	116					0	0	1	0	0
LSM5	23658	broad.mit.edu	37	7	32529949	32529949	+	Missense_Mutation	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr7:32529949G>A	uc003tct.2	-	1	75	c.29C>T	c.(28-30)TCG>TTG	p.S10L	LSM5_uc003tcu.2_RNA|LSM5_uc011kag.1_Intron|LSM5_uc011kah.1_Intron	NM_012322	NP_036454	Q9Y4Y9	LSM5_HUMAN	LSM5 homolog, U6 small nuclear RNA associated	10					exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay|mRNA processing|RNA splicing	cytosol|nucleus|ribonucleoprotein complex	protein binding|RNA binding				0			GBM - Glioblastoma multiforme(11;0.152)			CAGCAGCTGCGACGGGTTGGT	0.612000													4	20					0	0	1	0	0
FKBP9	11328	broad.mit.edu	37	7	33020002	33020002	+	Missense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr7:33020002C>G	uc003tdh.2	+	5	911	c.730C>G	c.(730-732)CTG>GTG	p.L244V	AVL9_uc011kai.1_Intron|FKBP9_uc011kak.1_RNA|FKBP9_uc011kal.1_Missense_Mutation_p.L297V|FKBP9_uc011kam.1_Missense_Mutation_p.L12V|FKBP9_uc003tdg.2_Missense_Mutation_p.L244V	NM_007270	NP_009201	O95302	FKBP9_HUMAN	FK506 binding protein 9 precursor	244	PPIase FKBP-type 2.				protein folding	endoplasmic reticulum|membrane	calcium ion binding|FK506 binding|peptidyl-prolyl cis-trans isomerase activity			central_nervous_system(13)|ovary(1)	14			GBM - Glioblastoma multiforme(11;0.0156)			TCAGGCATCTCTGGTGTTTGA	0.443000													4	146					0	0	1	0	0
BMPER	168667	broad.mit.edu	37	7	33946488	33946488	+	Silent	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr7:33946488C>T	uc011kap.1	+	2	306	c.192C>T	c.(190-192)GAC>GAT	p.D64D		NM_133468	NP_597725	Q8N8U9	BMPER_HUMAN	BMP-binding endothelial regulator precursor	64	VWFC 1.				blood vessel endothelial cell proliferation involved in sprouting angiogenesis|endothelial cell activation|negative regulation of BMP signaling pathway|positive regulation of ERK1 and ERK2 cascade|regulation of endothelial cell migration|regulation of pathway-restricted SMAD protein phosphorylation	extracellular space				ovary(2)|central_nervous_system(1)	3						TTATCACAGACAACCCTTGCA	0.373000													15	79					0	0	1	0	0
TBX20	57057	broad.mit.edu	37	7	35284624	35284624	+	Silent	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr7:35284624G>C	uc011kas.1	-	4	602	c.591C>G	c.(589-591)CTC>CTG	p.L197L		NM_001077653	NP_001071121	Q9UMR3	TBX20_HUMAN	T-box transcription factor TBX20	197	T-box.					nucleus	DNA binding			central_nervous_system(1)	1						CCATCTGTTTGAGTAGTTGCT	0.413000													17	51					0	0	1	0	0
CDK13	8621	broad.mit.edu	37	7	40134371	40134371	+	Missense_Mutation	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr7:40134371C>T	uc003thh.3	+	14	4613	c.4331C>T	c.(4330-4332)TCC>TTC	p.S1444F	CDK13_uc003thi.3_Missense_Mutation_p.S1384F|CDK13_uc003thj.2_Missense_Mutation_p.S495F|CDK13_uc003thk.2_Missense_Mutation_p.S377F	NM_003718	NP_003709	Q14004	CDK13_HUMAN	cell division cycle 2-like 5 isoform 1	1444					alternative nuclear mRNA splicing, via spliceosome|hemopoiesis|interspecies interaction between organisms|phosphorylation of RNA polymerase II C-terminal domain|positive regulation of cell proliferation|regulation of mitosis	nuclear cyclin-dependent protein kinase holoenzyme complex|nuclear speck	ATP binding|cyclin-dependent protein kinase activity|protein binding|RNA polymerase II carboxy-terminal domain kinase activity			lung(2)|skin(2)|ovary(1)	5						AGTGACCCTTCCACGGGGCCA	0.483000													22	93					0	0	1	0	0
ADCY1	107	broad.mit.edu	37	7	45662258	45662258	+	Missense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr7:45662258C>G	uc003tne.3	+	4	954	c.936C>G	c.(934-936)TTC>TTG	p.F312L	ADCY1_uc003tnd.2_Missense_Mutation_p.F87L	NM_021116	NP_066939	Q08828	ADCY1_HUMAN	adenylate cyclase 1	312	Cytoplasmic (Potential).				activation of adenylate cyclase activity by G-protein signaling pathway|activation of phospholipase C activity|activation of protein kinase A activity|cellular response to glucagon stimulus|energy reserve metabolic process|inhibition of adenylate cyclase activity by G-protein signaling pathway|nerve growth factor receptor signaling pathway|synaptic transmission|transmembrane transport|water transport	integral to membrane|plasma membrane	ATP binding|calcium- and calmodulin-responsive adenylate cyclase activity|calmodulin binding|metal ion binding			ovary(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	6					Adenosine(DB00640)|Adenosine monophosphate(DB00131)|Adenosine triphosphate(DB00171)	TCGTGGGTTTCACGGGCTTGG	0.483000													21	40					0	0	1	0	0
PKD1L1	168507	broad.mit.edu	37	7	47880142	47880142	+	Silent	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr7:47880142G>A	uc003tny.1	-	35	5469	c.5469C>T	c.(5467-5469)GAC>GAT	p.D1823D		NM_138295	NP_612152	Q8TDX9	PK1L1_HUMAN	polycystin-1L1	1823	PLAT.|Cytoplasmic (Potential).				cell-cell adhesion	integral to membrane				ovary(8)|upper_aerodigestive_tract(2)|breast(1)	11						ACAGTCCATTGTCGCCACATA	0.473000													25	71					0	0	1	0	0
PKD1L1	168507	broad.mit.edu	37	7	47942089	47942089	+	Missense_Mutation	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr7:47942089C>T	uc003tny.1	-	13	1951	c.1951G>A	c.(1951-1953)GAG>AAG	p.E651K		NM_138295	NP_612152	Q8TDX9	PK1L1_HUMAN	polycystin-1L1	651	Extracellular (Potential).|PKD 2.				cell-cell adhesion	integral to membrane				ovary(8)|upper_aerodigestive_tract(2)|breast(1)	11						GCAAGGACCTCCACTGTAAAT	0.488000													15	44					0	0	1	0	0
IKZF1	10320	broad.mit.edu	37	7	50468297	50468297	+	Missense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr7:50468297G>C	uc003tow.3	+	9	1700	c.1532G>C	c.(1531-1533)CGA>CCA	p.R511P	IKZF1_uc003tox.3_Missense_Mutation_p.R469P|IKZF1_uc003toy.3_Missense_Mutation_p.R469P|IKZF1_uc011kck.1_Missense_Mutation_p.R424P|IKZF1_uc003toz.3_Missense_Mutation_p.R481P|IKZF1_uc010kyx.2_Missense_Mutation_p.R251P|IKZF1_uc003tpa.3_Missense_Mutation_p.R253P	NM_006060	NP_006051	Q13422	IKZF1_HUMAN	zinc finger protein, subfamily 1A, 1 (Ikaros)	511	C2H2-type 6.				cell cycle|chromatin modification|mesoderm development	cytoplasm|nucleus	zinc ion binding			haematopoietic_and_lymphoid_tissue(147)|lung(1)	148	Glioma(55;0.08)|all_neural(89;0.245)	Acute lymphoblastic leukemia(4;7.29e-10)|all_hematologic(4;4.8e-07)				CACATAACGCGAGGGGAGCAC	0.627000			D		ALL								5	27					0	0	1	0	0
ZNF107	51427	broad.mit.edu	37	7	64168506	64168506	+	Silent	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr7:64168506C>T	uc003ttd.2	+	7	2610	c.1824C>T	c.(1822-1824)CAC>CAT	p.H608H	ZNF107_uc003tte.2_Silent_p.H608H	NM_016220	NP_057304	Q9UII5	ZN107_HUMAN	zinc finger protein 107	608	C2H2-type 20.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1		Lung NSC(55;0.00948)|all_lung(88;0.0249)				AGAAACCCCACAAATGTGAAG	0.353000													7	96					0	0	1	0	0
GUSB	2990	broad.mit.edu	37	7	65440021	65440021	+	Missense_Mutation	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr7:65440021G>A	uc003tun.2	-	6	1026	c.950C>T	c.(949-951)TCT>TTT	p.S317F	GUSB_uc011kdt.1_Missense_Mutation_p.S171F	NM_000181	NP_000172	P08236	BGLR_HUMAN	glucuronidase, beta precursor	317					glycosaminoglycan catabolic process	lysosome	beta-glucuronidase activity|cation binding				0						GTAGAAGTCAGACACAGGCCC	0.577000													17	95					0	0	1	0	0
GUSB	2990	broad.mit.edu	37	7	65440036	65440036	+	Missense_Mutation	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr7:65440036G>A	uc003tun.2	-	6	1011	c.935C>T	c.(934-936)TCA>TTA	p.S312L	GUSB_uc011kdt.1_Missense_Mutation_p.S166L	NM_000181	NP_000172	P08236	BGLR_HUMAN	glucuronidase, beta precursor	312					glycosaminoglycan catabolic process	lysosome	beta-glucuronidase activity|cation binding				0						AGGCCCCAGTGACGTCTGTGC	0.592000													17	87					0	0	1	0	0
NSUN5P2	260294	broad.mit.edu	37	7	72419308	72419308	+	Silent	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr7:72419308C>G	uc003twn.2	-	10	1345	c.633G>C	c.(631-633)CTG>CTC	p.L211L	POM121_uc010lam.1_3'UTR|NSUN5P2_uc003twl.2_RNA|NSUN5P2_uc003twm.2_Silent_p.L187L|NSUN5P2_uc003two.2_Silent_p.L211L|NSUN5P2_uc003twq.2_3'UTR|NSUN5P2_uc010lan.1_Silent_p.L83L|NSUN5P2_uc003twp.2_Silent_p.L211L	NM_032158	NP_115534			NOL1/NOP2/Sun domain family, member 5C isoform												0						GGAACGTGCTCAGGCCTCGGT	0.647000													10	53					0	0	1	0	0
BAZ1B	9031	broad.mit.edu	37	7	72892242	72892242	+	Missense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr7:72892242C>G	uc003tyc.2	-	7	1894	c.1549G>C	c.(1549-1551)GAA>CAA	p.E517Q		NM_032408	NP_115784	Q9UIG0	BAZ1B_HUMAN	bromodomain adjacent to zinc finger domain, 1B	517	Lys-rich.				ATP-dependent chromatin remodeling|chromatin-mediated maintenance of transcription|DNA replication-dependent nucleosome disassembly|double-strand break repair|heart morphogenesis|transcription, DNA-dependent	WINAC complex	ATP binding|chromatin binding|histone acetyl-lysine binding|histone kinase activity|non-membrane spanning protein tyrosine kinase activity|protein complex scaffold|vitamin D receptor activator activity|vitamin D receptor binding|zinc ion binding			ovary(4)|upper_aerodigestive_tract(1)|breast(1)|skin(1)	7		Lung NSC(55;0.0659)|all_lung(88;0.152)				CTTCGCAATTCTTCTGGGAGA	0.428000													41	151					0	0	1	0	0
MLXIPL	51085	broad.mit.edu	37	7	73020081	73020081	+	Missense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr7:73020081C>G	uc003tyn.1	-	7	886	c.838G>C	c.(838-840)GAC>CAC	p.D280H	MLXIPL_uc003tyk.1_Missense_Mutation_p.D280H|MLXIPL_uc003tyl.1_Missense_Mutation_p.D280H|MLXIPL_uc003tym.1_Missense_Mutation_p.D280H|MLXIPL_uc003tyo.1_RNA|MLXIPL_uc003typ.1_Missense_Mutation_p.D187H|MLXIPL_uc003tyq.1_Missense_Mutation_p.D22H	NM_032951	NP_116569	Q9NP71	WBS14_HUMAN	Williams Beuren syndrome chromosome region 14	280					anatomical structure morphogenesis|energy reserve metabolic process|glucose mediated signaling pathway|intracellular protein kinase cascade|negative regulation of cell cycle arrest|negative regulation of oxidative phosphorylation|negative regulation of peptidyl-serine phosphorylation|positive regulation of cell proliferation|positive regulation of fatty acid biosynthetic process|positive regulation of glycolysis|positive regulation of transcription from RNA polymerase II promoter|triglyceride homeostasis	cytosol|transcription factor complex	carbohydrate response element binding|protein heterodimerization activity|sequence-specific DNA binding transcription factor activity|transcription factor binding			pancreas(1)	1		Lung NSC(55;0.0659)|all_lung(88;0.152)				TGGATCATGTCAGCATTGCCG	0.662000													3	29					0	0	1	0	0
LIMK1	3984	broad.mit.edu	37	7	73511476	73511476	+	Missense_Mutation	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr7:73511476G>A	uc003uaa.1	+	4	523	c.358G>A	c.(358-360)GAC>AAC	p.D120N	RFC2_uc011kfa.1_Intron|LIMK1_uc010lbl.1_RNA|LIMK1_uc003uab.2_Missense_Mutation_p.D86N|LIMK1_uc003uac.1_5'UTR	NM_002314	NP_002305	P53667	LIMK1_HUMAN	LIM domain kinase 1	120	LIM zinc-binding 2.				actin cytoskeleton organization|axon guidance|negative regulation of ubiquitin-protein ligase activity|positive regulation of actin filament bundle assembly|positive regulation of axon extension|Rho protein signal transduction	cytosol|growth cone|nucleus	ATP binding|heat shock protein binding|protein serine/threonine kinase activity|zinc ion binding			stomach(2)|ovary(1)	3		Lung NSC(55;0.137)				CTTTATCGGTGACGGGGACAC	0.622000													12	40					0	0	1	0	0
GTF2IRD1	9569	broad.mit.edu	37	7	74016760	74016760	+	Nonstop_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr7:74016760G>C	uc003uaq.2	+	27	3273	c.2880G>C	c.(2878-2880)TAG>TAC	p.*960Y	GTF2IRD1_uc010lbq.2_Nonstop_Mutation_p.*977Y|GTF2IRD1_uc003uap.2_Nonstop_Mutation_p.*945Y|GTF2IRD1_uc003uar.1_3'UTR	NM_016328	NP_057412	Q9UHL9	GT2D1_HUMAN	GTF2I repeat domain containing 1 isoform 1	960						nucleus	DNA binding|protein binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity			ovary(4)	4						TTAATTACTAGACCTCAGTAC	0.428000													25	83					0	0	1	0	0
POM121C	100101267	broad.mit.edu	37	7	75053460	75053460	+	Nonsense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr7:75053460G>C	uc003udk.3	-	12	1805	c.920C>G	c.(919-921)TCA>TGA	p.S307*		NM_001099415	NP_001092885	A8CG34	P121C_HUMAN	POM121 membrane glycoprotein (rat)-like	549	Pore side (Potential).				mRNA transport|protein transport|transmembrane transport	endoplasmic reticulum membrane|nuclear membrane|nuclear pore	protein binding				0						AAAGGTAAATGAAGGCTGAGT	0.542000													16	530					0	0	1	0	0
CACNA2D1	781	broad.mit.edu	37	7	81624244	81624244	+	Missense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr7:81624244C>G	uc003uhr.1	-	20	1930	c.1674G>C	c.(1672-1674)AAG>AAC	p.K558N		NM_000722	NP_000713	P54289	CA2D1_HUMAN	calcium channel, voltage-dependent, alpha	577	Extracellular (Potential).					voltage-gated calcium channel complex	metal ion binding			ovary(5)|pancreas(1)	6					Felodipine(DB01023)|Gabapentin(DB00996)|Ibutilide(DB00308)|Isradipine(DB00270)|Magnesium Sulfate(DB00653)|Nifedipine(DB01115)	CATCAATCATCTTATTTCGAA	0.299000													14	41					0	0	1	0	0
PCLO	27445	broad.mit.edu	37	7	82545961	82545961	+	Nonsense_Mutation	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr7:82545961G>A	uc003uhx.2	-	7	11630	c.11341C>T	c.(11341-11343)CGA>TGA	p.R3781*	PCLO_uc003uhv.2_Nonsense_Mutation_p.R3781*|PCLO_uc010lec.2_Nonsense_Mutation_p.R746*	NM_033026	NP_149015	Q9Y6V0	PCLO_HUMAN	piccolo isoform 1	3712					cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity			ovary(7)	7						TGTTTCTTTCGAAGTTTTGCA	0.443000													18	70					0	0	1	0	0
PCLO	27445	broad.mit.edu	37	7	82583425	82583425	+	Missense_Mutation	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr7:82583425C>T	uc003uhx.2	-	5	7133	c.6844G>A	c.(6844-6846)GAA>AAA	p.E2282K	PCLO_uc003uhv.2_Missense_Mutation_p.E2282K|PCLO_uc010lec.2_5'Flank	NM_033026	NP_149015	Q9Y6V0	PCLO_HUMAN	piccolo isoform 1	2213					cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity			ovary(7)	7						ACTGGCCCTTCAGGTTTAGGT	0.423000													40	124					0	0	1	0	0
PCLO	27445	broad.mit.edu	37	7	82583502	82583502	+	Missense_Mutation	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr7:82583502C>T	uc003uhx.2	-	5	7056	c.6767G>A	c.(6766-6768)AGA>AAA	p.R2256K	PCLO_uc003uhv.2_Missense_Mutation_p.R2256K|PCLO_uc010lec.2_5'Flank	NM_033026	NP_149015	Q9Y6V0	PCLO_HUMAN	piccolo isoform 1	2187					cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity			ovary(7)	7						AGCACTAGCTCTACCATCTGG	0.393000													13	65					0	0	1	0	0
PCLO	27445	broad.mit.edu	37	7	82583509	82583509	+	Missense_Mutation	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr7:82583509C>T	uc003uhx.2	-	5	7049	c.6760G>A	c.(6760-6762)GAT>AAT	p.D2254N	PCLO_uc003uhv.2_Missense_Mutation_p.D2254N|PCLO_uc010lec.2_5'Flank	NM_033026	NP_149015	Q9Y6V0	PCLO_HUMAN	piccolo isoform 1	2185					cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity			ovary(7)	7						GCTCTACCATCTGGTGGGGCA	0.388000													11	63					0	0	1	0	0
PCLO	27445	broad.mit.edu	37	7	82764504	82764504	+	Missense_Mutation	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr7:82764504C>T	uc003uhx.2	-	3	2651	c.2362G>A	c.(2362-2364)GAA>AAA	p.E788K	PCLO_uc003uhv.2_Missense_Mutation_p.E788K	NM_033026	NP_149015	Q9Y6V0	PCLO_HUMAN	piccolo isoform 1	734	Pro-rich.				cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity			ovary(7)	7						GTTTTCTCTTCAGCTTGTGAC	0.438000													45	157					0	0	1	0	0
CDK14	5218	broad.mit.edu	37	7	90419921	90419921	+	Silent	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr7:90419921C>T	uc003uky.2	+	5	720	c.498C>T	c.(496-498)ATC>ATT	p.I166I	CDK14_uc003ukt.1_Silent_p.I120I|CDK14_uc003ukv.1_Silent_p.I120I|CDK14_uc003uku.1_Silent_p.I120I|CDK14_uc003ukx.1_RNA|CDK14_uc003ukz.1_Silent_p.I148I|CDK14_uc010les.1_Silent_p.I120I|CDK14_uc011khl.1_Silent_p.I37I	NM_012395	NP_036527	O94921	CDK14_HUMAN	PFTAIRE protein kinase 1	166	Protein kinase.				cell division|G2/M transition of mitotic cell cycle|regulation of canonical Wnt receptor signaling pathway|Wnt receptor signaling pathway	cytoplasmic cyclin-dependent protein kinase holoenzyme complex|nucleus|plasma membrane	ATP binding|cyclin binding|cyclin-dependent protein kinase activity			lung(3)|ovary(1)	4						TGAAGGTGATCAGGCTGCAGG	0.413000													18	76					0	0	1	0	0
AKAP9	10142	broad.mit.edu	37	7	91660901	91660901	+	Missense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr7:91660901G>C	uc003ulg.2	+	16	4546	c.4321G>C	c.(4321-4323)GAA>CAA	p.E1441Q	AKAP9_uc003ule.2_Missense_Mutation_p.E1453Q|AKAP9_uc003ulf.2_Missense_Mutation_p.E1441Q|AKAP9_uc003uli.2_Missense_Mutation_p.E1066Q	NM_005751	NP_005742	Q99996	AKAP9_HUMAN	A-kinase anchor protein 9 isoform 2	1453	Potential.				G2/M transition of mitotic cell cycle|signal transduction|synaptic transmission|transport	centrosome|cytosol|Golgi apparatus	receptor binding			breast(7)|ovary(6)|lung(5)|skin(3)|large_intestine(2)|prostate(2)|central_nervous_system(1)	26	all_cancers(62;2.46e-09)|all_epithelial(64;4.42e-08)|Breast(17;0.00206)|all_lung(186;0.185)|all_hematologic(106;0.215)|Lung NSC(181;0.249)		STAD - Stomach adenocarcinoma(171;6.16e-05)|Lung(22;0.123)|LUSC - Lung squamous cell carcinoma(200;0.225)			AGAACAATTAGAAGAAGAAGT	0.318000			T	BRAF	papillary thyroid								3	82					0	0	1	0	0
PEX1	5189	broad.mit.edu	37	7	92122404	92122404	+	Missense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr7:92122404G>C	uc003uly.2	-	20	3166	c.3070C>G	c.(3070-3072)CTA>GTA	p.L1024V	PEX1_uc011khr.1_Missense_Mutation_p.L816V|PEX1_uc010ley.2_Missense_Mutation_p.L967V|PEX1_uc011khs.1_Missense_Mutation_p.L702V	NM_000466	NP_000457	O43933	PEX1_HUMAN	peroxin1	1024					microtubule-based peroxisome localization|protein import into peroxisome matrix	cytosol|nucleus|peroxisomal membrane	ATP binding|ATPase activity, coupled|protein C-terminus binding|protein complex binding			ovary(1)|central_nervous_system(1)	2	all_cancers(62;9.35e-11)|all_epithelial(64;4.59e-10)|Breast(17;0.00201)|all_lung(186;0.0438)|Lung NSC(181;0.0592)	Breast(660;0.000932)|all_neural(109;0.00391)|Myeloproliferative disorder(862;0.0122)|Ovarian(593;0.023)|Medulloblastoma(109;0.123)	GBM - Glioblastoma multiforme(5;4.06e-06)|STAD - Stomach adenocarcinoma(4;4.51e-05)|all cancers(6;5.32e-05)|LUSC - Lung squamous cell carcinoma(200;0.225)|Lung(22;0.23)			GCCAGAGGTAGAGAGTCACTG	0.318000													4	134					0	0	1	0	0
PPP1R9A	55607	broad.mit.edu	37	7	94879509	94879509	+	Missense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr7:94879509C>G	uc003unp.2	+	9	2554	c.2272C>G	c.(2272-2274)CAG>GAG	p.Q758E	PPP1R9A_uc010lfj.2_Missense_Mutation_p.Q780E|PPP1R9A_uc011kif.1_Missense_Mutation_p.Q758E|PPP1R9A_uc003unq.2_Missense_Mutation_p.Q758E|PPP1R9A_uc011kig.1_Missense_Mutation_p.Q758E	NM_017650	NP_060120	Q9ULJ8	NEB1_HUMAN	protein phosphatase 1, regulatory (inhibitor)	758	Interacts with TGN38 (By similarity).|Potential.					cell junction|synapse|synaptosome	actin binding			ovary(2)|haematopoietic_and_lymphoid_tissue(1)|skin(1)	4	all_cancers(62;9.12e-11)|all_epithelial(64;4.34e-09)		STAD - Stomach adenocarcinoma(171;0.0031)			AAGCCAGTATCAGGCCTTGGA	0.373000										HNSCC(28;0.073)			4	76					0	0	1	0	0
ASNS	440	broad.mit.edu	37	7	97493706	97493706	+	Missense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr7:97493706C>G	uc003uot.3	-	4	858	c.352G>C	c.(352-354)GAT>CAT	p.D118H	ASNS_uc011kin.1_Missense_Mutation_p.D35H|ASNS_uc003uou.3_Missense_Mutation_p.D118H|ASNS_uc003uov.3_Missense_Mutation_p.D118H|ASNS_uc011kio.1_Missense_Mutation_p.D97H|ASNS_uc003uow.3_Missense_Mutation_p.D97H|ASNS_uc003uox.3_Missense_Mutation_p.D35H	NM_133436	NP_597680	P08243	ASNS_HUMAN	asparagine synthetase	118	Glutamine amidotransferase type-2.				cellular response to glucose starvation|glutamine metabolic process|negative regulation of apoptosis|positive regulation of mitotic cell cycle	cytosol|soluble fraction	asparagine synthase (glutamine-hydrolyzing) activity|ATP binding			ovary(1)	1	all_cancers(62;6.64e-09)|all_epithelial(64;1.58e-09)|Esophageal squamous(72;0.00448)|Lung NSC(181;0.0342)|all_lung(186;0.0369)				Adenosine triphosphate(DB00171)|L-Asparagine(DB00174)|L-Aspartic Acid(DB00128)|L-Glutamic Acid(DB00142)|L-Glutamine(DB00130)	AACACACCATCCAACATACAA	0.373000													3	70					0	0	1	0	0
FBXO24	26261	broad.mit.edu	37	7	100189465	100189465	+	Silent	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr7:100189465C>T	uc003uvm.1	+	4	791	c.498C>T	c.(496-498)CTC>CTT	p.L166L	FBXO24_uc010lha.1_RNA|FBXO24_uc003uvl.1_Silent_p.L152L|FBXO24_uc003uvn.1_5'UTR|uc011kjy.1_Intron|FBXO24_uc011kjz.1_Silent_p.L204L|FBXO24_uc011kka.1_Silent_p.L154L	NM_033506	NP_277041	O75426	FBX24_HUMAN	F-box only protein 24 isoform 1	166						ubiquitin ligase complex	ubiquitin-protein ligase activity			ovary(3)|skin(1)	4	Lung NSC(181;0.0261)|all_lung(186;0.0392)|Esophageal squamous(72;0.0439)					TCTCCACCCTCGGCCAGATGC	0.572000													22	140					0	0	1	0	0
MUC17	140453	broad.mit.edu	37	7	100685909	100685909	+	Missense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr7:100685909C>G	uc003uxp.1	+	3	11265	c.11212C>G	c.(11212-11214)CTT>GTT	p.L3738V	MUC17_uc010lho.1_RNA	NM_001040105	NP_001035194	Q685J3	MUC17_HUMAN	mucin 17 precursor	3738	Extracellular (Potential).|Ser-rich.					extracellular region|integral to membrane|plasma membrane	extracellular matrix constituent, lubricant activity			ovary(14)|skin(8)|breast(3)|lung(2)	27	Lung NSC(181;0.136)|all_lung(186;0.182)					TTCTGCAACTCTTGACAGCAC	0.498000													51	204					0	0	1	0	0
VGF	7425	broad.mit.edu	37	7	100806313	100806313	+	Missense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr7:100806313C>G	uc003uxx.3	-	2	2030	c.1812G>C	c.(1810-1812)GAG>GAC	p.E604D		NM_003378	NP_003369	O15240	VGF_HUMAN	VGF nerve growth factor inducible precursor	604					response to cAMP	extracellular space|transport vesicle	growth factor activity				0	Lung NSC(181;0.168)|all_lung(186;0.215)					CGATGTAATTCTCCAGCTCCT	0.527000													9	22					0	0	1	0	0
CUX1	1523	broad.mit.edu	37	7	101837145	101837145	+	Missense_Mutation	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr7:101837145C>T	uc003uyx.3	+	13	1138	c.1100C>T	c.(1099-1101)GCA>GTA	p.A367V	CUX1_uc003uys.3_Missense_Mutation_p.A378V|CUX1_uc003uyt.2_Missense_Mutation_p.A378V|CUX1_uc011kkn.1_Missense_Mutation_p.A339V|CUX1_uc003uyw.2_Missense_Mutation_p.A332V|CUX1_uc003uyv.2_Missense_Mutation_p.A362V|CUX1_uc003uyu.2_Missense_Mutation_p.A376V	NM_181552	NP_853530	P39880	CUX1_HUMAN	cut-like homeobox 1 isoform a	367					negative regulation of transcription from RNA polymerase II promoter	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(5)|pancreas(1)|central_nervous_system(1)|skin(1)	8						ATGGAGTTTGCACCGTCCGAG	0.428000													3	50					0	0	1	0	0
PSMC2	5701	broad.mit.edu	37	7	103008360	103008360	+	Silent	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr7:103008360C>T	uc003vbs.2	+	12	1231	c.1161C>T	c.(1159-1161)AGC>AGT	p.S387S	SLC26A5_uc003vbt.1_Intron|SLC26A5_uc003vbu.1_Intron|SLC26A5_uc003vbv.1_Intron|PSMC2_uc011klo.1_Silent_p.S250S	NM_002803	NP_002794	P35998	PRS7_HUMAN	proteasome 26S ATPase subunit 2	387					anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|G1/S transition of mitotic cell cycle|interspecies interaction between organisms|M/G1 transition of mitotic cell cycle|mRNA metabolic process|negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|regulation of apoptosis|regulation of cellular amino acid metabolic process|S phase of mitotic cell cycle|viral reproduction	mitochondrion|nucleus|proteasome complex	ATP binding|ATPase activity|protein binding				0						AGATTAGAAGCGTCTGCACAG	0.408000													24	81					0	0	1	0	0
CDHR3	222256	broad.mit.edu	37	7	105621546	105621546	+	Missense_Mutation	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr7:105621546G>A	uc003vdl.3	+	3	490	c.382G>A	c.(382-384)GAG>AAG	p.E128K	CDHR3_uc003vdk.2_5'UTR|CDHR3_uc011kls.1_RNA|CDHR3_uc003vdm.3_Missense_Mutation_p.E115K|CDHR3_uc011klt.1_Missense_Mutation_p.E40K	NM_152750	NP_689963	Q6ZTQ4	CDHR3_HUMAN	hypothetical protein LOC222256 precursor	128	Cadherin 1.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(1)	1						AGATGTGAACGAGCCACCTCA	0.512000													12	35					0	0	1	0	0
CDHR3	222256	broad.mit.edu	37	7	105635288	105635288	+	Missense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr7:105635288G>C	uc003vdl.3	+	5	713	c.605G>C	c.(604-606)AGA>ACA	p.R202T	CDHR3_uc003vdk.2_Intron|CDHR3_uc011kls.1_Intron|CDHR3_uc003vdm.3_Missense_Mutation_p.R189T|CDHR3_uc011klt.1_Missense_Mutation_p.R114T	NM_152750	NP_689963	Q6ZTQ4	CDHR3_HUMAN	hypothetical protein LOC222256 precursor	202	Cadherin 2.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(1)	1						GCAGGACACAGAAGGTAGTCT	0.463000													3	24					0	0	1	0	0
CDHR3	222256	broad.mit.edu	37	7	105662778	105662778	+	Missense_Mutation	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr7:105662778G>A	uc003vdl.3	+	14	2068	c.1960G>A	c.(1960-1962)GAT>AAT	p.D654N	CDHR3_uc003vdk.2_Intron|CDHR3_uc003vdm.3_Missense_Mutation_p.D641N|CDHR3_uc011klt.1_Missense_Mutation_p.D566N|CDHR3_uc003vdn.2_Intron	NM_152750	NP_689963	Q6ZTQ4	CDHR3_HUMAN	hypothetical protein LOC222256 precursor	654	Cadherin 6.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(1)	1						CTACGTAACTGATGACAACTT	0.463000													41	169					0	0	1	0	0
BCAP29	55973	broad.mit.edu	37	7	107240940	107240940	+	Missense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr7:107240940G>C	uc003vej.2	+	6	918	c.579G>C	c.(577-579)AAG>AAC	p.K193N	BCAP29_uc011kly.1_Missense_Mutation_p.K99N|BCAP29_uc011klz.1_Missense_Mutation_p.K193N|BCAP29_uc011kma.1_Missense_Mutation_p.K193N	NM_018844	NP_061332	Q9UHQ4	BAP29_HUMAN	B-cell receptor-associated protein BAP29 isoform	193	Cytoplasmic (Potential).				apoptosis|intracellular protein transport|vesicle-mediated transport	endoplasmic reticulum membrane|integral to membrane				large_intestine(1)|ovary(1)	2						AATTAAGGAAGACTTCAGATG	0.318000													12	59					0	0	1	0	0
SLC26A3	1811	broad.mit.edu	37	7	107434305	107434305	+	Silent	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr7:107434305C>T	uc003ver.2	-	3	364	c.153G>A	c.(151-153)AAG>AAA	p.K51K	SLC26A3_uc003ves.2_Intron	NM_000111	NP_000102	P40879	S26A3_HUMAN	solute carrier family 26, member 3	51					excretion	integral to membrane|membrane fraction	inorganic anion exchanger activity|secondary active sulfate transmembrane transporter activity|sequence-specific DNA binding transcription factor activity|transcription cofactor activity			ovary(3)|skin(1)	4						GGACAATTCTCTTGGCCTTTT	0.423000													27	60					0	0	1	0	0
CFTR	1080	broad.mit.edu	37	7	117232505	117232505	+	Nonsense_Mutation	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr7:117232505C>T	uc003vjd.2	+	14	2416	c.2284C>T	c.(2284-2286)CAG>TAG	p.Q762*	CFTR_uc011knq.1_Nonsense_Mutation_p.Q168*	NM_000492	NP_000483	P13569	CFTR_HUMAN	cystic fibrosis transmembrane conductance	762	Cytoplasmic (Potential).				respiratory gaseous exchange	apical plasma membrane|basolateral plasma membrane|chloride channel complex|early endosome membrane	ATP binding|ATP-binding and phosphorylation-dependent chloride channel activity|channel-conductance-controlling ATPase activity|chloride channel regulator activity|enzyme binding|PDZ domain binding			central_nervous_system(2)|skin(2)|ovary(1)	5	Lung NSC(10;0.00148)|all_lung(10;0.00171)		STAD - Stomach adenocarcinoma(10;0.000534)		Bumetanide(DB00887)|Glibenclamide(DB01016)	CCCCACGCTTCAGGCACGAAG	0.522000									Cystic_Fibrosis				12	31					0	0	1	0	0
PTPRZ1	5803	broad.mit.edu	37	7	121659177	121659177	+	Splice_Site	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr7:121659177G>C	uc003vjy.2	+	13	5239	c.4844_splice	c.e13-1	p.E1615_splice	PTPRZ1_uc003vjz.2_Splice_Site_p.E755_splice|PTPRZ1_uc011knt.1_Splice_Site_p.E205_splice	NM_002851	NP_002842	P23471	PTPRZ_HUMAN	protein tyrosine phosphatase, receptor-type,						central nervous system development	integral to plasma membrane	protein binding|protein tyrosine/threonine phosphatase activity|transmembrane receptor protein tyrosine phosphatase activity			ovary(3)|large_intestine(2)|lung(2)|central_nervous_system(1)|kidney(1)	9						TCTGACTACAGAGGCCAGTAA	0.423000													12	42					0	0	1	0	0
FAM71F2	346653	broad.mit.edu	37	7	128315720	128315720	+	Missense_Mutation	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr7:128315720G>A	uc003vnk.3	+	2	278	c.172G>A	c.(172-174)GAT>AAT	p.D58N	FAM71F2_uc010llm.1_Intron|FAM71F2_uc003vnl.2_Intron|FAM71F2_uc010lln.1_Intron	NM_001012454	NP_001012457	Q6NXP2	F71F2_HUMAN	hypothetical protein LOC346653 isoform a	58											0						ACCTGAGGCTGATTTCCAGGT	0.577000													14	34					0	0	1	0	0
OPN1SW	611	broad.mit.edu	37	7	128414594	128414594	+	Silent	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr7:128414594G>A	uc003vnt.3	-	3	645	c.645C>T	c.(643-645)CTC>CTT	p.L215L		NM_001708	NP_001699	P03999	OPSB_HUMAN	opsin 1 (cone pigments), short-wave-sensitive	215	Helical; Name=5; (Potential).				phototransduction|protein-chromophore linkage|visual perception	integral to plasma membrane	G-protein coupled receptor activity|photoreceptor activity				0						AGAAGCAGATGAGGGAGAGAG	0.547000													32	110					0	0	1	0	0
FLNC	2318	broad.mit.edu	37	7	128481359	128481359	+	Missense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr7:128481359G>C	uc003vnz.3	+	12	2158	c.1949G>C	c.(1948-1950)CGA>CCA	p.R650P	FLNC_uc003voa.3_Missense_Mutation_p.R650P	NM_001458	NP_001449	Q14315	FLNC_HUMAN	gamma filamin isoform a	650	Filamin 4.				cell junction assembly	cytoskeleton|cytosol|plasma membrane|sarcomere	actin binding			breast(5)|large_intestine(3)|ovary(2)|central_nervous_system(1)|skin(1)	12						GAGGACATCCGAGACTCACCC	0.627000													72	263					0	0	1	0	0
LOC407835	407835	broad.mit.edu	37	7	128766797	128766797	+	Missense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr7:128766797G>C	uc003voo.2	+	1	473	c.226G>C	c.(226-228)GAG>CAG	p.E76Q		NR_002144				SubName: Full=cDNA FLJ35806 fis, clone TESTI2005987, highly similar to Dual specificity mitogen-activated protein kinase kinase 2 (EC 2.7.12.2); SubName: Full=Mitogen-activated protein kinase kinase 2, isoform CRA_d;												0						AAGGACCTCAGAGCTGGACGC	0.597000													10	41					0	0	1	0	0
CALD1	800	broad.mit.edu	37	7	134618280	134618280	+	Missense_Mutation	SNP	C	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr7:134618280C>A	uc003vrz.2	+	5	1219	c.760C>A	c.(760-762)CAT>AAT	p.H254N	CALD1_uc003vry.2_Intron|CALD1_uc003vsa.2_Intron|CALD1_uc003vsb.2_Intron|CALD1_uc010lmm.2_Intron|CALD1_uc011kpt.1_Intron|CALD1_uc003vsc.2_Intron|CALD1_uc003vsd.2_Intron|CALD1_uc011kpu.1_Intron|CALD1_uc011kpv.1_Intron|CALD1_uc003vse.2_Missense_Mutation_p.H118N	NM_033138	NP_149129	Q05682	CALD1_HUMAN	caldesmon 1 isoform 1	254					cellular component movement|muscle contraction	cytosol|focal adhesion|myofibril	actin binding|calmodulin binding|myosin binding|tropomyosin binding				0						GATTTCCCATCATGAAAAGAT	0.433000													6	24					0.0293803	0.0294944	1	1	0
DGKI	9162	broad.mit.edu	37	7	137082127	137082127	+	Nonsense_Mutation	SNP	C	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr7:137082127C>A	uc003vtt.2	-	32	2978	c.2977G>T	c.(2977-2979)GAA>TAA	p.E993*	DGKI_uc003vtu.2_Nonsense_Mutation_p.E662*	NM_004717	NP_004708	O75912	DGKI_HUMAN	diacylglycerol kinase, iota	993					activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|intracellular signal transduction|platelet activation	nucleus|plasma membrane	ATP binding|diacylglycerol kinase activity|metal ion binding			ovary(1)|kidney(1)|skin(1)	3						ACTCACGTTTCACTGTCTGCC	0.328000													31	69					1.26612e-14	1.31704e-14	1	1	0
ZC3HAV1	56829	broad.mit.edu	37	7	138758630	138758630	+	Missense_Mutation	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr7:138758630G>A	uc003vun.2	-	7	2232	c.1844C>T	c.(1843-1845)TCT>TTT	p.S615F	ZC3HAV1_uc003vuo.2_Missense_Mutation_p.S76F|ZC3HAV1_uc003vup.2_Missense_Mutation_p.S615F	NM_020119	NP_064504	Q7Z2W4	ZCCHV_HUMAN	zinc finger antiviral protein isoform 1	615	WWE.				response to virus	cytoplasm|nucleus	NAD+ ADP-ribosyltransferase activity|RNA binding|zinc ion binding			ovary(1)	1						CCATGTGCCAGATTCATTCTT	0.438000													29	101					0	0	1	0	0
ZC3HAV1	56829	broad.mit.edu	37	7	138764300	138764300	+	Missense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr7:138764300G>C	uc003vun.2	-	4	1775	c.1387C>G	c.(1387-1389)CAG>GAG	p.Q463E	ZC3HAV1_uc003vuo.2_5'Flank|ZC3HAV1_uc003vup.2_Missense_Mutation_p.Q463E	NM_020119	NP_064504	Q7Z2W4	ZCCHV_HUMAN	zinc finger antiviral protein isoform 1	463					response to virus	cytoplasm|nucleus	NAD+ ADP-ribosyltransferase activity|RNA binding|zinc ion binding			ovary(1)	1						CCAGCATCCTGAATCCTAGGT	0.453000													34	107					0	0	1	0	0
UBN2	254048	broad.mit.edu	37	7	138946461	138946461	+	Missense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr7:138946461G>C	uc011kqr.1	+	6	1369	c.1369G>C	c.(1369-1371)GAA>CAA	p.E457Q	UBN2_uc003vuv.2_Missense_Mutation_p.E180Q	NM_173569	NP_775840	Q6ZU65	UBN2_HUMAN	ubinuclein 2	457										ovary(1)|skin(1)	2						TGTACTTCTTGAAAAACGTAT	0.418000													19	53					0	0	1	0	0
ADCK2	90956	broad.mit.edu	37	7	140378978	140378978	+	Silent	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr7:140378978G>A	uc003vvy.1	+	3	1282	c.1104G>A	c.(1102-1104)CAG>CAA	p.Q368Q	ADCK2_uc003vvz.2_Silent_p.Q368Q	NM_052853	NP_443085	Q7Z695	ADCK2_HUMAN	aarF domain containing kinase 2	368	Protein kinase.					integral to membrane	ATP binding|protein serine/threonine kinase activity				0	Melanoma(164;0.00956)					ACGAAGCTCAGAATCTAGAAC	0.512000													32	84					0	0	1	0	0
EPHB6	2051	broad.mit.edu	37	7	142563810	142563810	+	Missense_Mutation	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr7:142563810G>A	uc011kst.1	+	9	1985	c.1198G>A	c.(1198-1200)GAC>AAC	p.D400N	EPHB6_uc011ksu.1_Missense_Mutation_p.D400N|EPHB6_uc003wbs.2_Missense_Mutation_p.D108N|EPHB6_uc003wbt.2_5'UTR|EPHB6_uc003wbu.2_Missense_Mutation_p.D108N|EPHB6_uc003wbv.2_5'Flank	NM_004445	NP_004436	O15197	EPHB6_HUMAN	ephrin receptor EphB6 precursor	400	Extracellular (Potential).|Fibronectin type-III 1.					extracellular region|integral to plasma membrane	ATP binding|ephrin receptor activity			lung(8)|large_intestine(4)|central_nervous_system(3)|stomach(1)|skin(1)|ovary(1)|pancreas(1)	19	Melanoma(164;0.059)					GGGTCGAGGGGACCTGCTCTT	0.637000													8	28					0	0	1	0	0
OR2A5	393046	broad.mit.edu	37	7	143747858	143747858	+	Silent	SNP	C	A	A	rs139541008	by1000genomes	TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr7:143747858C>A	uc011ktw.1	+	1	364	c.364C>A	c.(364-366)CGG>AGG	p.R122R		NM_012365	NP_036497	Q96R48	OR2A5_HUMAN	olfactory receptor, family 2, subfamily A,	122	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(3)	3	Melanoma(164;0.0783)					GTCCTACGATCGGTACATGGC	0.468000													6	256					5.9392e-07	6.06525e-07	1	1	0
CNTNAP2	26047	broad.mit.edu	37	7	147869395	147869395	+	Silent	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr7:147869395G>C	uc003weu.1	+	18	3351	c.2835G>C	c.(2833-2835)GTG>GTC	p.V945V		NM_014141	NP_054860	Q9UHC6	CNTP2_HUMAN	cell recognition molecule Caspr2 precursor	945	Laminin G-like 3.|Extracellular (Potential).				behavior|cell adhesion|clustering of voltage-gated potassium channels|limbic system development|neuron recognition|signal transduction|striatum development|superior temporal gyrus development|thalamus development|transmission of nerve impulse	axolemma|cell body fiber|dendrite|juxtaparanode region of axon|voltage-gated potassium channel complex	receptor binding			ovary(9)|central_nervous_system(1)|pancreas(1)	11	Melanoma(164;0.153)	all_cancers(3;3.51e-10)|all_epithelial(3;1.4e-05)|Myeloproliferative disorder(3;0.00452)|Lung NSC(3;0.0067)|all_lung(3;0.00794)	OV - Ovarian serous cystadenocarcinoma(82;0.0319)			TGAATGGGGTGACACTTGACC	0.547000										HNSCC(39;0.1)			27	70					0	0	1	0	0
ZNF786	136051	broad.mit.edu	37	7	148769447	148769447	+	Silent	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr7:148769447C>T	uc003wfh.2	-	4	554	c.417G>A	c.(415-417)GGG>GGA	p.G139G	ZNF786_uc011kuk.1_Silent_p.G102G|ZNF786_uc003wfi.2_Silent_p.G53G	NM_152411	NP_689624	Q8N393	ZN786_HUMAN	zinc finger protein 786	139					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			breast(3)|skin(1)	4	Melanoma(164;0.15)		OV - Ovarian serous cystadenocarcinoma(82;0.00463)			TCTGTGGGCTCCCGAGGGTGA	0.517000													3	31					0	0	1	0	0
TMEM176B	28959	broad.mit.edu	37	7	150493471	150493471	+	Missense_Mutation	SNP	C	G	G	rs141592438	byFrequency	TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr7:150493471C>G	uc003wht.3	-	2	353	c.187G>C	c.(187-189)GAG>CAG	p.E63Q	TMEM176B_uc003whu.3_Missense_Mutation_p.E63Q|TMEM176B_uc003whv.3_Missense_Mutation_p.E63Q|TMEM176B_uc003whw.3_Missense_Mutation_p.E63Q	NM_001101313	NP_001094783	Q3YBM2	T176B_HUMAN	transmembrane protein 176B isoform a	63					cell differentiation|organ morphogenesis	integral to membrane|nuclear membrane				ovary(1)	1			OV - Ovarian serous cystadenocarcinoma(82;0.0121)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		GCCAGCTGCTCATAACCAATC	0.448000													24	78					0	0	1	0	0
KCNH2	3757	broad.mit.edu	37	7	150646083	150646083	+	Missense_Mutation	SNP	G	C	C	rs121912510		TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr7:150646083G>C	uc003wic.2	-	10	2466	c.2453C>G	c.(2452-2454)TCG>TGG	p.S818W	KCNH2_uc003wib.2_Missense_Mutation_p.S478W|KCNH2_uc011kux.1_Missense_Mutation_p.S722W	NM_000238	NP_000229	Q12809	KCNH2_HUMAN	voltage-gated potassium channel, subfamily H,	818	Cytoplasmic (Potential).|cNMP.		S -> L (in LQT2).		blood circulation|muscle contraction|regulation of heart contraction|regulation of transcription, DNA-dependent	voltage-gated potassium channel complex	delayed rectifier potassium channel activity|two-component sensor activity			skin(3)|ovary(1)	4	all_neural(206;0.219)		OV - Ovarian serous cystadenocarcinoma(82;0.0121)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)	Amiodarone(DB01118)|Amsacrine(DB00276)|Astemizole(DB00637)|Carvedilol(DB01136)|Cisapride(DB00604)|Dofetilide(DB00204)|Halofantrine(DB01218)|Ibutilide(DB00308)|Pimozide(DB01100)|Propafenone(DB01182)|Quinidine(DB00908)|Sertindole(DB06144)|Sotalol(DB00489)|Terfenadine(DB00342)|Verapamil(DB00661)	ATCCCCGTTCGACTTGCCAGG	0.612000													3	84					0	0	1	0	0
PRKAG2	51422	broad.mit.edu	37	7	151262965	151262965	+	Missense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr7:151262965C>G	uc003wkk.2	-	12	1851	c.1240G>C	c.(1240-1242)GAT>CAT	p.D414H	PRKAG2_uc003wki.2_Missense_Mutation_p.D173H|PRKAG2_uc011kvl.1_Missense_Mutation_p.D289H|PRKAG2_uc003wkj.2_Missense_Mutation_p.D370H|PRKAG2_uc003wkl.2_Intron	NM_016203	NP_057287	Q9UGJ0	AAKG2_HUMAN	AMP-activated protein kinase gamma2 subunit	414	CBS 2.				ATP biosynthetic process|carnitine shuttle|cell cycle arrest|fatty acid biosynthetic process|glycogen metabolic process|insulin receptor signaling pathway|intracellular protein kinase cascade|positive regulation of peptidyl-threonine phosphorylation|positive regulation of protein kinase activity|regulation of fatty acid biosynthetic process|regulation of fatty acid oxidation|regulation of glucose import|regulation of glycolysis|sterol biosynthetic process	AMP-activated protein kinase complex|cytosol|nucleoplasm	ADP binding|ATP binding|cAMP-dependent protein kinase inhibitor activity|cAMP-dependent protein kinase regulator activity|phosphorylase kinase regulator activity|protein kinase activator activity|protein kinase binding			breast(1)|kidney(1)	2	all_neural(206;0.187)	all_hematologic(28;0.0605)	OV - Ovarian serous cystadenocarcinoma(82;0.00252)	UCEC - Uterine corpus endometrioid carcinoma (81;0.185)		TTTGGCATATCAGACATCTAA	0.423000													4	91					0	0	1	0	0
GALNTL5	168391	broad.mit.edu	37	7	151711802	151711802	+	Missense_Mutation	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr7:151711802G>A	uc003wkp.2	+	8	1323	c.1100G>A	c.(1099-1101)GGA>GAA	p.G367E	GALNTL5_uc003wkq.2_Missense_Mutation_p.G118E|GALNTL5_uc003wkr.2_RNA|GALNTL5_uc003wks.2_RNA|GALNTL5_uc010lqf.2_Missense_Mutation_p.G256E	NM_145292	NP_660335	Q7Z4T8	GLTL5_HUMAN	UDP-N-acetyl-alpha-D-galactosamine:polypeptide	367	Lumenal (Potential).					Golgi membrane|integral to membrane	transferase activity, transferring glycosyl groups			ovary(2)	2	all_neural(206;0.187)	all_hematologic(28;0.0749)	OV - Ovarian serous cystadenocarcinoma(82;0.00427)	UCEC - Uterine corpus endometrioid carcinoma (81;0.18)|BRCA - Breast invasive adenocarcinoma(188;0.166)		AAACAAACTGGAAAACCTTCT	0.418000													33	101					0	0	1	0	0
MLL3	58508	broad.mit.edu	37	7	151859593	151859593	+	Nonsense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr7:151859593G>C	uc003wla.2	-	43	11288	c.11069C>G	c.(11068-11070)TCA>TGA	p.S3690*	MLL3_uc003wkz.2_Nonsense_Mutation_p.S2751*|MLL3_uc003wky.2_Nonsense_Mutation_p.S1199*	NM_170606	NP_733751	Q8NEZ4	MLL3_HUMAN	myeloid/lymphoid or mixed-lineage leukemia 3	3690					intracellular signal transduction|regulation of transcription, DNA-dependent|transcription, DNA-dependent		DNA binding|protein binding|zinc ion binding			large_intestine(27)|pancreas(13)|ovary(9)|central_nervous_system(8)|breast(3)|upper_aerodigestive_tract(1)|urinary_tract(1)|skin(1)	63	all_neural(206;0.187)	all_hematologic(28;0.0592)|Prostate(32;0.0906)	OV - Ovarian serous cystadenocarcinoma(82;0.00715)	UCEC - Uterine corpus endometrioid carcinoma (81;0.0597)|BRCA - Breast invasive adenocarcinoma(188;0.0462)		AGTTGCTTGTGAGAAATCACT	0.463000			N		medulloblastoma								81	271					0	0	1	0	0
MLL3	58508	broad.mit.edu	37	7	151860030	151860030	+	Silent	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr7:151860030G>A	uc003wla.2	-	43	10851	c.10632C>T	c.(10630-10632)TTC>TTT	p.F3544F	MLL3_uc003wkz.2_Silent_p.F2605F|MLL3_uc003wky.2_Silent_p.F1053F	NM_170606	NP_733751	Q8NEZ4	MLL3_HUMAN	myeloid/lymphoid or mixed-lineage leukemia 3	3544					intracellular signal transduction|regulation of transcription, DNA-dependent|transcription, DNA-dependent		DNA binding|protein binding|zinc ion binding			large_intestine(27)|pancreas(13)|ovary(9)|central_nervous_system(8)|breast(3)|upper_aerodigestive_tract(1)|urinary_tract(1)|skin(1)	63	all_neural(206;0.187)	all_hematologic(28;0.0592)|Prostate(32;0.0906)	OV - Ovarian serous cystadenocarcinoma(82;0.00715)	UCEC - Uterine corpus endometrioid carcinoma (81;0.0597)|BRCA - Breast invasive adenocarcinoma(188;0.0462)		GGGACTGCTGGAAGCTGGTCC	0.488000			N		medulloblastoma								25	89					0	0	1	0	0
MLL3	58508	broad.mit.edu	37	7	151860641	151860641	+	Missense_Mutation	SNP	G	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr7:151860641G>T	uc003wla.2	-	43	10240	c.10021C>A	c.(10021-10023)CCT>ACT	p.P3341T	MLL3_uc003wkz.2_Missense_Mutation_p.P2402T|MLL3_uc003wky.2_Missense_Mutation_p.P850T	NM_170606	NP_733751	Q8NEZ4	MLL3_HUMAN	myeloid/lymphoid or mixed-lineage leukemia 3	3341	Gln-rich.|Pro-rich.				intracellular signal transduction|regulation of transcription, DNA-dependent|transcription, DNA-dependent		DNA binding|protein binding|zinc ion binding			large_intestine(27)|pancreas(13)|ovary(9)|central_nervous_system(8)|breast(3)|upper_aerodigestive_tract(1)|urinary_tract(1)|skin(1)	63	all_neural(206;0.187)	all_hematologic(28;0.0592)|Prostate(32;0.0906)	OV - Ovarian serous cystadenocarcinoma(82;0.00715)	UCEC - Uterine corpus endometrioid carcinoma (81;0.0597)|BRCA - Breast invasive adenocarcinoma(188;0.0462)		AGGTGGGCAGGAGCACTGTTG	0.517000			N		medulloblastoma								25	81					4.26978e-12	4.42151e-12	1	1	0
MLL3	58508	broad.mit.edu	37	7	151919142	151919142	+	Nonsense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr7:151919142G>C	uc003wla.2	-	22	3662	c.3443C>G	c.(3442-3444)TCA>TGA	p.S1148*	MLL3_uc003wkz.2_Nonsense_Mutation_p.S209*	NM_170606	NP_733751	Q8NEZ4	MLL3_HUMAN	myeloid/lymphoid or mixed-lineage leukemia 3	1148					intracellular signal transduction|regulation of transcription, DNA-dependent|transcription, DNA-dependent		DNA binding|protein binding|zinc ion binding			large_intestine(27)|pancreas(13)|ovary(9)|central_nervous_system(8)|breast(3)|upper_aerodigestive_tract(1)|urinary_tract(1)|skin(1)	63	all_neural(206;0.187)	all_hematologic(28;0.0592)|Prostate(32;0.0906)	OV - Ovarian serous cystadenocarcinoma(82;0.00715)	UCEC - Uterine corpus endometrioid carcinoma (81;0.0597)|BRCA - Breast invasive adenocarcinoma(188;0.0462)		ACAGCAGTCTGAGGAAGGCAC	0.279000			N		medulloblastoma								20	89					0	0	1	0	0
RBM33	155435	broad.mit.edu	37	7	155473423	155473423	+	Missense_Mutation	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr7:155473423C>T	uc010lqk.1	+	5	756	c.388C>T	c.(388-390)CAC>TAC	p.H130Y	RBM33_uc003wme.2_Missense_Mutation_p.H130Y	NM_053043	NP_444271	Q96EV2	RBM33_HUMAN	RNA binding motif protein 33	130	Glu-rich.						nucleotide binding|RNA binding			ovary(1)	1	all_neural(206;0.101)	all_hematologic(28;0.0592)	OV - Ovarian serous cystadenocarcinoma(82;0.011)	UCEC - Uterine corpus endometrioid carcinoma (81;0.2)		ACTGGTTTATCACAAATCTGA	0.403000													5	36					0	0	1	0	0
RNF32	140545	broad.mit.edu	37	7	156468504	156468504	+	Missense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr7:156468504G>C	uc003wmo.2	+	8	981	c.799G>C	c.(799-801)GAA>CAA	p.E267Q	RNF32_uc010lqm.2_Missense_Mutation_p.E267Q|RNF32_uc003wmq.2_Missense_Mutation_p.E267Q|RNF32_uc003wmr.2_Missense_Mutation_p.E267Q|RNF32_uc003wmu.2_RNA	NM_030936	NP_112198	Q9H0A6	RNF32_HUMAN	ring finger protein 32	267						aggresome|endosome	protein binding|zinc ion binding				0	Ovarian(565;0.218)	all_hematologic(28;0.0592)	OV - Ovarian serous cystadenocarcinoma(82;0.00291)	UCEC - Uterine corpus endometrioid carcinoma (81;0.169)		GCAGTTGGAAGAAAAATGTGG	0.493000													14	69					0	0	1	0	0
RNF32	140545	broad.mit.edu	37	7	156468519	156468519	+	Missense_Mutation	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr7:156468519G>A	uc003wmo.2	+	8	996	c.814G>A	c.(814-816)GAG>AAG	p.E272K	RNF32_uc010lqm.2_Missense_Mutation_p.E272K|RNF32_uc003wmq.2_Missense_Mutation_p.E272K|RNF32_uc003wmr.2_Missense_Mutation_p.E272K|RNF32_uc003wmu.2_RNA	NM_030936	NP_112198	Q9H0A6	RNF32_HUMAN	ring finger protein 32	272						aggresome|endosome	protein binding|zinc ion binding				0	Ovarian(565;0.218)	all_hematologic(28;0.0592)	OV - Ovarian serous cystadenocarcinoma(82;0.00291)	UCEC - Uterine corpus endometrioid carcinoma (81;0.169)		ATGTGGCCATGAGATCACAGA	0.493000													12	62					0	0	1	0	0
PTPRN2	5799	broad.mit.edu	37	7	157926700	157926700	+	Missense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr7:157926700G>C	uc003wno.2	-	9	1346	c.1225C>G	c.(1225-1227)CGA>GGA	p.R409G	PTPRN2_uc003wnp.2_Missense_Mutation_p.R392G|PTPRN2_uc003wnq.2_Missense_Mutation_p.R409G|PTPRN2_uc003wnr.2_Missense_Mutation_p.R371G|PTPRN2_uc011kwa.1_Missense_Mutation_p.R432G	NM_002847	NP_002838	Q92932	PTPR2_HUMAN	protein tyrosine phosphatase, receptor type, N	409	Extracellular (Potential).					integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			ovary(4)|large_intestine(1)|pleura(1)|skin(1)	7	all_neural(206;0.181)	all_cancers(7;8.99e-13)|all_epithelial(9;2.4e-06)|all_hematologic(28;0.0155)|Breast(660;0.132)	OV - Ovarian serous cystadenocarcinoma(82;0.00463)	STAD - Stomach adenocarcinoma(7;0.0875)		GGTAAGAGTCGAGACCCGTGG	0.592000													26	74					0	0	1	0	0
ESYT2	57488	broad.mit.edu	37	7	158534343	158534343	+	Missense_Mutation	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr7:158534343C>T	uc003wob.1	-	17	2186	c.2120G>A	c.(2119-2121)AGA>AAA	p.R707K	ESYT2_uc003woc.1_Missense_Mutation_p.R531K|ESYT2_uc003wny.1_Intron|ESYT2_uc003wnz.1_Missense_Mutation_p.R146K|ESYT2_uc003woa.1_Missense_Mutation_p.R284K	NM_020728	NP_065779	A0FGR8	ESYT2_HUMAN	family with sequence similarity 62 (C2 domain	735						integral to membrane|plasma membrane				central_nervous_system(2)|kidney(1)	3						GGAGGAGCTTCTGCCCAGGTC	0.657000													22	56					0	0	1	0	0
WDR60	55112	broad.mit.edu	37	7	158723168	158723168	+	Silent	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr7:158723168C>G	uc003woe.3	+	21	2666	c.2508C>G	c.(2506-2508)GTC>GTG	p.V836V	WDR60_uc010lqv.2_RNA|WDR60_uc010lqw.2_Silent_p.V468V	NM_018051	NP_060521	Q8WVS4	WDR60_HUMAN	WD repeat domain 60	836										ovary(2)|breast(1)|central_nervous_system(1)	4	Ovarian(565;0.152)	all_cancers(7;1.25e-09)|all_epithelial(9;0.000894)|all_hematologic(28;0.00603)	OV - Ovarian serous cystadenocarcinoma(82;0.00174)	UCEC - Uterine corpus endometrioid carcinoma (81;0.19)|STAD - Stomach adenocarcinoma(7;0.18)		GAGGGAGGGTCAAGCTGGTAC	0.413000													8	25					0	0	1	0	0
MIR596	693181	broad.mit.edu	37	8	1765426	1765426	+	RNA	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr8:1765426C>T	hsa-mir-596|MI0003608	+			c.30C>T																				0						CTGCCCGGCTCCTCGGGAACC	0.448000													11	37					0	0	1	0	0
CSMD1	64478	broad.mit.edu	37	8	3046514	3046514	+	Silent	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr8:3046514G>A	uc011kwk.1	-	35	5811	c.5421C>T	c.(5419-5421)TTC>TTT	p.F1807F	CSMD1_uc011kwj.1_Silent_p.F1199F|CSMD1_uc003wqe.2_Silent_p.F963F|CSMD1_uc010lrg.2_5'Flank	NM_033225	NP_150094	Q96PZ7	CSMD1_HUMAN	CUB and Sushi multiple domains 1 precursor	1807	Extracellular (Potential).|CUB 11.					integral to membrane				breast(20)|large_intestine(5)	25		all_cancers(1;5.7e-41)|all_epithelial(1;2.54e-36)|Lung NSC(1;7.54e-11)|all_lung(1;3.2e-10)|Hepatocellular(1;3.78e-05)|Breast(1;0.000196)|Myeloproliferative disorder(4;0.000374)|Esophageal squamous(1;0.0157)|Ovarian(12;0.091)|Renal(68;0.144)|Colorectal(14;0.234)		all cancers(1;5.03e-41)|Epithelial(1;4.78e-31)|Lung(1;1.14e-14)|LUSC - Lung squamous cell carcinoma(1;2.34e-14)|GBM - Glioblastoma multiforme(1;4.49e-10)|Colorectal(4;1.18e-07)|OV - Ovarian serous cystadenocarcinoma(1;3.2e-07)|BRCA - Breast invasive adenocarcinoma(1;6.17e-07)|COAD - Colon adenocarcinoma(4;0.000539)|READ - Rectum adenocarcinoma(4;0.00896)|Kidney(5;0.00957)|KIRC - Kidney renal clear cell carcinoma(5;0.0689)		TTCGTTGAGTGAAATTGCCAC	0.458000													11	32					0	0	1	0	0
SGK223	157285	broad.mit.edu	37	8	8176255	8176255	+	Silent	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr8:8176255G>A	uc003wsh.3	-	5	3630	c.3630C>T	c.(3628-3630)ATC>ATT	p.I1210I		NM_001080826	NP_001074295	Q86YV5	SG223_HUMAN	pragmin	1210	Protein kinase.						ATP binding|non-membrane spanning protein tyrosine kinase activity				0						AAAAGTTGCTGATGATGAGCC	0.697000													8	20					0	0	1	0	0
DLC1	10395	broad.mit.edu	37	8	12957629	12957629	+	Silent	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr8:12957629C>T	uc003wwm.2	-	9	2661	c.2217G>A	c.(2215-2217)CAG>CAA	p.Q739Q	DLC1_uc003wwk.1_Silent_p.Q302Q|DLC1_uc003wwl.1_Silent_p.Q336Q|DLC1_uc011kxx.1_Silent_p.Q228Q	NM_182643	NP_872584	Q96QB1	RHG07_HUMAN	deleted in liver cancer 1 isoform 1	739					actin cytoskeleton organization|activation of caspase activity|focal adhesion assembly|forebrain development|heart morphogenesis|hindbrain morphogenesis|induction of apoptosis|negative regulation of cell migration|negative regulation of cell proliferation|negative regulation of Rho protein signal transduction|negative regulation of stress fiber assembly|neural tube closure|positive regulation of protein dephosphorylation|regulation of cell shape|small GTPase mediated signal transduction	caveola|cytosol|focal adhesion|nucleus	Rho GTPase activator activity|SH2 domain binding			ovary(3)|pancreas(2)|lung(1)|kidney(1)	7						TGCTGCTGGTCTGCGTGGAGT	0.622000													11	52					0	0	1	0	0
FGF17	8822	broad.mit.edu	37	8	21904123	21904123	+	Missense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr8:21904123G>C	uc003xag.2	+	4	348	c.336G>C	c.(334-336)AAG>AAC	p.K112N	FGF17_uc003xah.2_Missense_Mutation_p.K101N|FGF17_uc003xai.2_Missense_Mutation_p.K135N	NM_003867	NP_003858	O60258	FGF17_HUMAN	fibroblast growth factor 17 precursor	112					cell-cell signaling|fibroblast growth factor receptor signaling pathway|insulin receptor signaling pathway|nervous system development	extracellular space	growth factor activity|type 1 fibroblast growth factor receptor binding|type 2 fibroblast growth factor receptor binding				0				Colorectal(74;8.48e-05)|READ - Rectum adenocarcinoma(5;0.0276)|COAD - Colon adenocarcinoma(73;0.0618)		GTATGAACAAGAGGGGCAAGC	0.567000													20	53					0	0	1	0	0
ESCO2	157570	broad.mit.edu	37	8	27641540	27641540	+	Missense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr8:27641540C>G	uc003xgg.2	+	5	1062	c.979C>G	c.(979-981)CCA>GCA	p.P327A	ESCO2_uc010luy.1_Intron	NM_001017420	NP_001017420	Q56NI9	ESCO2_HUMAN	establishment of cohesion 1 homolog 2	327					cell cycle|post-translational protein acetylation|regulation of DNA replication	chromatin|nucleus	acyltransferase activity|metal ion binding			central_nervous_system(1)	1		Ovarian(32;0.000953)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0204)|KIRC - Kidney renal clear cell carcinoma(542;0.0955)|Kidney(114;0.115)|Colorectal(74;0.132)		CACTGTCTATCCAATCTTCAG	0.323000									SC_Phocomelia_syndrome				3	110					0	0	1	0	0
HMBOX1	79618	broad.mit.edu	37	8	28876293	28876293	+	Missense_Mutation	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr8:28876293G>A	uc003xhd.3	+	6	1056	c.714G>A	c.(712-714)ATG>ATA	p.M238I	HMBOX1_uc010lvd.2_Missense_Mutation_p.M238I|HMBOX1_uc003xhc.3_Missense_Mutation_p.M238I|HMBOX1_uc010lve.2_RNA|HMBOX1_uc003xhe.2_Missense_Mutation_p.M238I|HMBOX1_uc011lay.1_Missense_Mutation_p.M238I|HMBOX1_uc003xhf.2_Missense_Mutation_p.M226I|HMBOX1_uc003xhg.2_Missense_Mutation_p.M226I	NM_001135726	NP_001129198	Q6NT76	HMBX1_HUMAN	homeobox containing 1	238					negative regulation of transcription, DNA-dependent|positive regulation of transcription, DNA-dependent	cytoplasm|nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)	1		Ovarian(32;0.0192)		KIRC - Kidney renal clear cell carcinoma(542;0.135)|Kidney(114;0.161)		CACTAAGTATGAGACCAGCCC	0.453000													31	80					0	0	1	0	0
TEX15	56154	broad.mit.edu	37	8	30700686	30700686	+	Missense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr8:30700686C>G	uc003xil.2	-	1	5848	c.5848G>C	c.(5848-5850)GAG>CAG	p.E1950Q		NM_031271	NP_112561	Q9BXT5	TEX15_HUMAN	testis expressed 15	1950										ovary(3)|upper_aerodigestive_tract(2)|skin(2)	7				KIRC - Kidney renal clear cell carcinoma(542;0.0918)|Kidney(114;0.111)		GTATCCTCCTCAAGCCCAATA	0.333000													32	119					0	0	1	0	0
TEX15	56154	broad.mit.edu	37	8	30701580	30701580	+	Missense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr8:30701580C>G	uc003xil.2	-	1	4954	c.4954G>C	c.(4954-4956)GAA>CAA	p.E1652Q		NM_031271	NP_112561	Q9BXT5	TEX15_HUMAN	testis expressed 15	1652										ovary(3)|upper_aerodigestive_tract(2)|skin(2)	7				KIRC - Kidney renal clear cell carcinoma(542;0.0918)|Kidney(114;0.111)		TGCTTTCTTTCAAAAGCTTCC	0.358000													22	65					0	0	1	0	0
TEX15	56154	broad.mit.edu	37	8	30704421	30704421	+	Missense_Mutation	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr8:30704421C>T	uc003xil.2	-	1	2113	c.2113G>A	c.(2113-2115)GAA>AAA	p.E705K		NM_031271	NP_112561	Q9BXT5	TEX15_HUMAN	testis expressed 15	705										ovary(3)|upper_aerodigestive_tract(2)|skin(2)	7				KIRC - Kidney renal clear cell carcinoma(542;0.0918)|Kidney(114;0.111)		GTCACAAATTCTTCACAAAGC	0.373000													44	103					0	0	1	0	0
TEX15	56154	broad.mit.edu	37	8	30704944	30704944	+	Missense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr8:30704944C>G	uc003xil.2	-	1	1590	c.1590G>C	c.(1588-1590)TTG>TTC	p.L530F		NM_031271	NP_112561	Q9BXT5	TEX15_HUMAN	testis expressed 15	530										ovary(3)|upper_aerodigestive_tract(2)|skin(2)	7				KIRC - Kidney renal clear cell carcinoma(542;0.0918)|Kidney(114;0.111)		CTTCAGAACTCAAAATTTCTA	0.313000													25	98					0	0	1	0	0
KCNU1	157855	broad.mit.edu	37	8	36766906	36766906	+	Silent	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr8:36766906G>C	uc010lvw.2	+	21	2271	c.2184G>C	c.(2182-2184)CCG>CCC	p.P728P	KCNU1_uc003xjw.2_RNA	NM_001031836	NP_001027006	A8MYU2	KCNU1_HUMAN	potassium channel, subfamily U, member 1	728	Segment S9.|Cytoplasmic (Potential).					voltage-gated potassium channel complex	binding|large conductance calcium-activated potassium channel activity|voltage-gated potassium channel activity			ovary(1)	1				KIRC - Kidney renal clear cell carcinoma(67;0.0504)|Kidney(114;0.0634)		ACTCAGCCCCGATGGGGCTTC	0.468000													96	292					0	0	1	0	0
ZNF703	80139	broad.mit.edu	37	8	37556024	37556024	+	Silent	SNP	G	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr8:37556024G>T	uc003xjy.1	+	2	1802	c.1605G>T	c.(1603-1605)CGG>CGT	p.R535R		NM_025069	NP_079345	Q9H7S9	ZN703_HUMAN	zinc finger protein 703	535					adherens junction assembly|mammary gland epithelial cell differentiation|negative regulation of homotypic cell-cell adhesion|negative regulation of transcription, DNA-dependent|positive regulation of cell migration|positive regulation of epithelial to mesenchymal transition|positive regulation of mammary gland epithelial cell proliferation|regulation of canonical Wnt receptor signaling pathway|regulation of cell cycle|regulation of transforming growth factor beta receptor signaling pathway|transcription, DNA-dependent	cytoplasm|nucleus	nucleic acid binding|protein binding|zinc ion binding			breast(1)|pancreas(1)	2			BRCA - Breast invasive adenocarcinoma(5;7.93e-25)|LUSC - Lung squamous cell carcinoma(8;1.05e-09)			TGTCCTTGCGGAATCCACACA	0.463000													11	18					1.08611e-07	1.11135e-07	1	1	0
FNTA	2339	broad.mit.edu	37	8	42927367	42927367	+	Missense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr8:42927367C>G	uc003xps.2	+	5	598	c.550C>G	c.(550-552)CAG>GAG	p.Q184E	FNTA_uc003xpt.2_Missense_Mutation_p.Q93E|FNTA_uc003xpu.2_Missense_Mutation_p.Q117E|FNTA_uc003xpv.2_RNA	NM_002027	NP_002018	P49354	FNTA_HUMAN	farnesyltransferase, CAAX box, alpha isoform a	184	PFTA 3.				cellular component disassembly involved in apoptosis|positive regulation of deacetylase activity|positive regulation of tubulin deacetylation|protein farnesylation|protein geranylgeranylation|transforming growth factor beta receptor signaling pathway	cytosol|microtubule associated complex	alpha-tubulin binding|CAAX-protein geranylgeranyltransferase activity|microtubule binding|protein farnesyltransferase activity			ovary(1)	1	Prostate(17;0.0119)|Ovarian(28;0.0172)|Lung SC(25;0.184)	all_cancers(86;0.000223)|all_epithelial(80;1.61e-07)|all_lung(54;0.00021)|Lung NSC(58;0.000778)|Hepatocellular(245;0.0524)|Renal(179;0.0822)|Esophageal squamous(32;0.129)	Lung(22;0.0777)|LUSC - Lung squamous cell carcinoma(45;0.17)			AGATCCATCTCAGGAGCTTGA	0.378000													39	142					0	0	1	0	0
POTEA	340441	broad.mit.edu	37	8	43152239	43152239	+	Missense_Mutation	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr8:43152239C>T	uc003xpz.1	+	2	419	c.376C>T	c.(376-378)CAT>TAT	p.H126Y	POTEA_uc003xqa.1_Missense_Mutation_p.H126Y	NM_001005365	NP_001005365	Q6S8J7	POTEA_HUMAN	POTE ankyrin domain family, member A isoform 2	126	ANK 1.									ovary(1)	1						ATGTCAACTTCATGTCTTTGA	0.383000													32	119					0	0	1	0	0
KIAA0146	23514	broad.mit.edu	37	8	48309015	48309015	+	Nonsense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr8:48309015C>G	uc003xqd.2	+	6	614	c.605C>G	c.(604-606)TCA>TGA	p.S202*	KIAA0146_uc011lcz.1_Intron|KIAA0146_uc011lda.1_Intron|KIAA0146_uc011ldb.1_Nonsense_Mutation_p.S202*|KIAA0146_uc010lxs.2_5'UTR|KIAA0146_uc011ldc.1_Nonsense_Mutation_p.S132*|KIAA0146_uc011ldd.1_Nonsense_Mutation_p.S142*|KIAA0146_uc003xqe.2_Intron|KIAA0146_uc003xqf.2_RNA|KIAA0146_uc011lde.1_Intron	NM_001080394	NP_001073863	Q14159	K0146_HUMAN	hypothetical protein LOC23514	202											0		Lung NSC(58;0.175)				CTCATTGATTCAGAATCCCCT	0.348000													23	95					0	0	1	0	0
PRKDC	5591	broad.mit.edu	37	8	48776018	48776018	+	Nonsense_Mutation	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr8:48776018G>A	uc003xqi.2	-	43	5749	c.5692C>T	c.(5692-5694)CAA>TAA	p.Q1898*	PRKDC_uc003xqj.2_Nonsense_Mutation_p.Q1898*|PRKDC_uc011ldh.1_Intron	NM_006904	NP_008835	P78527	PRKDC_HUMAN	protein kinase, DNA-activated, catalytic	1898					cellular response to insulin stimulus|double-strand break repair via nonhomologous end joining|peptidyl-serine phosphorylation|positive regulation of transcription from RNA polymerase II promoter	DNA-dependent protein kinase-DNA ligase 4 complex|transcription factor complex	ATP binding|DNA binding|DNA-dependent protein kinase activity|transcription factor binding			lung(12)|central_nervous_system(9)|ovary(6)|skin(4)|large_intestine(3)	34		all_cancers(86;0.0336)|all_epithelial(80;0.00111)|Lung NSC(129;0.00363)|all_lung(136;0.00391)				TGGAAAACTTGATTAATTTTT	0.313000								NHEJ					4	143					0	0	1	0	0
RB1CC1	9821	broad.mit.edu	37	8	53569888	53569888	+	Nonsense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr8:53569888G>C	uc003xre.3	-	15	3059	c.2501C>G	c.(2500-2502)TCA>TGA	p.S834*	RB1CC1_uc003xrf.3_Nonsense_Mutation_p.S834*	NM_014781	NP_055596	Q8TDY2	RBCC1_HUMAN	Rb1-inducible coiled coil protein 1 isoform 1	834					autophagy|cell cycle|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytosol|nucleus|pre-autophagosomal structure|ULK1-ATG13-FIP200 complex	protein binding			ovary(8)|upper_aerodigestive_tract(1)|large_intestine(1)|skin(1)	11		all_cancers(86;0.137)|all_epithelial(80;0.00494)|Lung NSC(129;0.011)|all_lung(136;0.023)				TAATGAATTTGAGAAGTCACA	0.308000													29	89					0	0	1	0	0
RB1CC1	9821	broad.mit.edu	37	8	53586728	53586728	+	Missense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr8:53586728C>G	uc003xre.3	-	7	1237	c.679G>C	c.(679-681)GAA>CAA	p.E227Q	RB1CC1_uc003xrf.3_Missense_Mutation_p.E227Q	NM_014781	NP_055596	Q8TDY2	RBCC1_HUMAN	Rb1-inducible coiled coil protein 1 isoform 1	227					autophagy|cell cycle|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytosol|nucleus|pre-autophagosomal structure|ULK1-ATG13-FIP200 complex	protein binding			ovary(8)|upper_aerodigestive_tract(1)|large_intestine(1)|skin(1)	11		all_cancers(86;0.137)|all_epithelial(80;0.00494)|Lung NSC(129;0.011)|all_lung(136;0.023)				TCTGAGTCTTCATGTTCAGGT	0.413000													73	201					0	0	1	0	0
RP1	6101	broad.mit.edu	37	8	55538983	55538983	+	Missense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr8:55538983G>C	uc003xsd.1	+	4	2689	c.2541G>C	c.(2539-2541)TTG>TTC	p.L847F	RP1_uc011ldy.1_Intron	NM_006269	NP_006260	P56715	RP1_HUMAN	retinitis pigmentosa RP1 protein	847					axoneme assembly|intracellular signal transduction|photoreceptor cell maintenance|photoreceptor cell outer segment organization|phototransduction, visible light|retinal cone cell development|retinal rod cell development	cilium axoneme|cytoplasm|microtubule|microtubule associated complex|photoreceptor connecting cilium|photoreceptor inner segment|photoreceptor outer segment	microtubule binding			skin(7)|ovary(4)|pancreas(1)	12		all_lung(136;0.0831)|Lung NSC(129;0.109)|all_epithelial(80;0.123)	OV - Ovarian serous cystadenocarcinoma(7;4.4e-07)|Epithelial(17;3.37e-05)|all cancers(17;0.000285)			CTGGGTATTTGAGAGGAATGG	0.343000													16	60					0	0	1	0	0
PLAG1	5324	broad.mit.edu	37	8	57079819	57079819	+	Silent	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr8:57079819C>T	uc003xsq.3	-	3	937	c.486G>A	c.(484-486)ACG>ACA	p.T162T	PLAG1_uc003xsr.3_Silent_p.T162T|PLAG1_uc010lyi.2_Silent_p.T162T|PLAG1_uc010lyj.2_Silent_p.T80T	NM_001114635	NP_001108107	Q6DJT9	PLAG1_HUMAN	pleiomorphic adenoma gene 1 isoform b	162	C2H2-type 5.|Decreased nuclear import with localization in the nucleus but also in the cytoplasm.					nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding		CTNNB1/PLAG1(60)|FGFR1_ENST00000447712/PLAG1(28)|CHCHD7/PLAG1(12)|LIFR_ENST00000263409/PLAG1(10)|HAS2/PLAG1(10)|COL1A2/PLAG1(3)|TCEA1_ENST00000521604/PLAG1(3)	salivary_gland(113)|soft_tissue(13)|lung(1)|central_nervous_system(1)|breast(1)	129		all_lung(136;0.0548)|Lung NSC(129;0.0718)|all_epithelial(80;0.125)	Epithelial(17;0.00179)|all cancers(17;0.0125)			GAAGCACTCCCGTGCTTTCAA	0.468000			T	TCEA1|LIFR|CTNNB1|CHCHD7	salivary adenoma								25	57					0	0	1	0	0
SDCBP	6386	broad.mit.edu	37	8	59490703	59490703	+	Missense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr8:59490703G>C	uc003xtn.2	+	6	664	c.514G>C	c.(514-516)GAT>CAT	p.D172H	SDCBP_uc003xto.2_Missense_Mutation_p.D171H|SDCBP_uc003xtr.2_Missense_Mutation_p.D171H|SDCBP_uc003xtp.2_Missense_Mutation_p.D166H|SDCBP_uc003xtq.2_Missense_Mutation_p.D172H|SDCBP_uc003xts.2_Missense_Mutation_p.D178H|SDCBP_uc011led.1_Missense_Mutation_p.D113H	NM_005625	NP_005616	O00560	SDCB1_HUMAN	syntenin isoform 1	172	PDZ 1.				actin cytoskeleton organization|axon guidance|positive regulation of phosphorylation|protein targeting to membrane|substrate-dependent cell migration, cell extension|synaptic transmission	cytoskeleton|cytosol|endoplasmic reticulum membrane|focal adhesion|interleukin-5 receptor complex|melanosome|nucleus	cytoskeletal adaptor activity|frizzled binding|interleukin-5 receptor binding|protein heterodimerization activity|protein N-terminus binding|syndecan binding				0		all_lung(136;0.0271)|Lung NSC(129;0.0351)|all_epithelial(80;0.0554)				ATGGAGCTCTGATAAAGCGCA	0.443000													13	89					0	0	1	0	0
CHD7	55636	broad.mit.edu	37	8	61765259	61765259	+	Missense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr8:61765259G>C	uc003xue.2	+	30	6574	c.6097G>C	c.(6097-6099)GAT>CAT	p.D2033H		NM_017780	NP_060250	Q9P2D1	CHD7_HUMAN	chromodomain helicase DNA binding protein 7	2033					central nervous system development|chromatin modification|cognition|cranial nerve development|face development|heart morphogenesis|in utero embryonic development|inner ear morphogenesis|nose development|palate development|regulation of growth hormone secretion|regulation of transcription, DNA-dependent|retina development in camera-type eye|skeletal system development|T cell differentiation|transcription, DNA-dependent	nucleus	ATP binding|chromatin binding|DNA binding|helicase activity			ovary(4)|large_intestine(1)|central_nervous_system(1)|lung(1)|breast(1)|pancreas(1)	9		all_cancers(86;0.2)|all_lung(136;0.0402)|Lung NSC(129;0.0459)|all_epithelial(80;0.0477)	BRCA - Breast invasive adenocarcinoma(89;0.143)			CGTCAAGCCAGATGATGGTAG	0.398000													15	41					0	0	1	0	0
ASPH	444	broad.mit.edu	37	8	62566204	62566204	+	Missense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr8:62566204G>C	uc003xuj.2	-	4	607	c.338C>G	c.(337-339)TCT>TGT	p.S113C	ASPH_uc011leg.1_Missense_Mutation_p.S84C|ASPH_uc003xuo.2_Missense_Mutation_p.S113C|ASPH_uc011leh.1_Missense_Mutation_p.S99C|ASPH_uc003xul.2_Missense_Mutation_p.S99C|ASPH_uc011lei.1_Missense_Mutation_p.S99C|ASPH_uc011lej.1_Missense_Mutation_p.S99C|ASPH_uc003xun.2_Missense_Mutation_p.S113C|ASPH_uc011lek.1_Missense_Mutation_p.S113C|ASPH_uc003xum.2_Missense_Mutation_p.S113C	NM_004318	NP_004309	Q12797	ASPH_HUMAN	aspartate beta-hydroxylase isoform a	113	Glu-rich.|Lumenal (Potential).				muscle contraction	integral to endoplasmic reticulum membrane	calcium ion binding|electron carrier activity|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|peptide-aspartate beta-dioxygenase activity|structural constituent of muscle			ovary(3)	3	Lung SC(2;0.153)	Lung NSC(129;0.0358)|all_lung(136;0.0654)|all_epithelial(80;0.101)			L-Aspartic Acid(DB00128)|Succinic acid(DB00139)	CTCTGAAGTAGATCTCTCTTT	0.448000													17	60					0	0	1	0	0
MTFR1	9650	broad.mit.edu	37	8	66619257	66619257	+	Missense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr8:66619257C>G	uc003xvm.2	+	6	742	c.530C>G	c.(529-531)TCT>TGT	p.S177C	MTFR1_uc011lep.1_Missense_Mutation_p.S177C|MTFR1_uc003xvn.2_Missense_Mutation_p.S144C|MTFR1_uc003xvo.1_Missense_Mutation_p.S167C	NM_014637	NP_055452	Q15390	MTFR1_HUMAN	mitochondrial fission regulator 1 isoform 1	177						mitochondrion|plasma membrane				pancreas(1)	1			Epithelial(68;0.0526)|BRCA - Breast invasive adenocarcinoma(89;0.156)|all cancers(69;0.171)|OV - Ovarian serous cystadenocarcinoma(28;0.194)			GACTTAGATTCTACCACATTT	0.443000													8	44					0	0	1	0	0
VCPIP1	80124	broad.mit.edu	37	8	67577872	67577872	+	Missense_Mutation	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr8:67577872C>T	uc003xwn.2	-	1	1581	c.1322G>A	c.(1321-1323)AGA>AAA	p.R441K	SGK3_uc003xwp.2_5'Flank|C8orf44_uc003xwo.1_5'Flank	NM_025054	NP_079330	Q96JH7	VCIP1_HUMAN	valosin containing protein (p97)/p47 complex	441					protein ubiquitination	endoplasmic reticulum|Golgi stack	ubiquitin-specific protease activity			lung(2)|ovary(2)|central_nervous_system(1)|breast(1)|skin(1)|kidney(1)	8		Lung NSC(129;0.142)|all_lung(136;0.227)	Epithelial(68;0.000771)|OV - Ovarian serous cystadenocarcinoma(28;0.00248)|all cancers(69;0.00296)|BRCA - Breast invasive adenocarcinoma(89;0.149)			TCCAGTCCTTCTGTAGAAATA	0.428000													48	154					0	0	1	0	0
VCPIP1	80124	broad.mit.edu	37	8	67577894	67577894	+	Missense_Mutation	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr8:67577894C>T	uc003xwn.2	-	1	1559	c.1300G>A	c.(1300-1302)GAT>AAT	p.D434N	SGK3_uc003xwp.2_5'Flank|C8orf44_uc003xwo.1_5'Flank	NM_025054	NP_079330	Q96JH7	VCIP1_HUMAN	valosin containing protein (p97)/p47 complex	434					protein ubiquitination	endoplasmic reticulum|Golgi stack	ubiquitin-specific protease activity			lung(2)|ovary(2)|central_nervous_system(1)|breast(1)|skin(1)|kidney(1)	8		Lung NSC(129;0.142)|all_lung(136;0.227)	Epithelial(68;0.000771)|OV - Ovarian serous cystadenocarcinoma(28;0.00248)|all cancers(69;0.00296)|BRCA - Breast invasive adenocarcinoma(89;0.149)			TGATGGACATCAGCAACCAAA	0.418000													44	149					0	0	1	0	0
STAU2	27067	broad.mit.edu	37	8	74464516	74464516	+	Missense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr8:74464516G>C	uc003xzm.2	-	13	1497	c.1261C>G	c.(1261-1263)CAA>GAA	p.Q421E	STAU2_uc011lfg.1_Missense_Mutation_p.Q249E|STAU2_uc003xzn.2_Missense_Mutation_p.Q389E|STAU2_uc011lfh.1_Missense_Mutation_p.Q317E|STAU2_uc003xzo.2_Missense_Mutation_p.Q421E|STAU2_uc003xzp.2_Missense_Mutation_p.Q389E|STAU2_uc011lfi.1_Missense_Mutation_p.Q383E|STAU2_uc003xzq.2_Missense_Mutation_p.Q201E|STAU2_uc010lzk.2_Missense_Mutation_p.Q389E|STAU2_uc010lzl.1_Missense_Mutation_p.Q249E	NM_014393	NP_055208	Q9NUL3	STAU2_HUMAN	staufen homolog 2 isoform e	421	Required for dendritic transport (By similarity).				transport	endoplasmic reticulum|microtubule|nucleolus	double-stranded RNA binding				0	Breast(64;0.0138)		Epithelial(68;0.026)|BRCA - Breast invasive adenocarcinoma(89;0.0483)|all cancers(69;0.0972)			TCCATCTCTTGATAAACATCA	0.363000													3	70					0	0	1	0	0
HEY1	23462	broad.mit.edu	37	8	80678898	80678898	+	Missense_Mutation	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr8:80678898C>T	uc003ybm.2	-	4	519	c.319G>A	c.(319-321)GCA>ACA	p.A107T	HEY1_uc010lzq.2_5'Flank|HEY1_uc003ybl.2_Missense_Mutation_p.A111T	NM_012258	NP_036390	Q9Y5J3	HEY1_HUMAN	hairy/enhancer-of-split related with YRPW motif	107	Transcriptional repression and interaction with NCOR1 and SIN3A (By similarity).				angiogenesis|negative regulation of Notch signaling pathway|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transcription regulatory region DNA binding|Notch signaling pathway|transcription, DNA-dependent	nucleus	DNA binding|protein binding			lung(3)	3	all_lung(9;5.1e-05)		Epithelial(68;0.076)|all cancers(69;0.179)			TTCCCTCCTGCCGTATGCAGC	0.507000													5	306					0	0	1	0	0
CPNE3	8895	broad.mit.edu	37	8	87552517	87552517	+	Missense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr8:87552517C>G	uc003ydv.2	+	8	750	c.588C>G	c.(586-588)ATC>ATG	p.I196M		NM_003909	NP_003900	O75131	CPNE3_HUMAN	copine III	196	C2 2.				lipid metabolic process|vesicle-mediated transport	cytosol	calcium-dependent phospholipid binding|protein serine/threonine kinase activity|transporter activity			ovary(1)|skin(1)	2						CTTTCAAGATCTCTCTTAACT	0.294000													22	124					0	0	1	0	0
CNBD1	168975	broad.mit.edu	37	8	88365923	88365923	+	Silent	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr8:88365923G>A	uc003ydy.2	+	10	1260	c.1212G>A	c.(1210-1212)GAG>GAA	p.E404E		NM_173538	NP_775809	Q8NA66	CNBD1_HUMAN	cyclic nucleotide binding domain containing 1	404	cNMP.									ovary(3)	3						CCTTTGGTGAGATTAGCGTCC	0.338000													4	67					0	0	1	0	0
MMP16	4325	broad.mit.edu	37	8	89068395	89068395	+	Nonsense_Mutation	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr8:89068395C>T	uc003yeb.3	-	8	1616	c.1334G>A	c.(1333-1335)TGG>TAG	p.W445*		NM_005941	NP_005932	P51512	MMP16_HUMAN	matrix metalloproteinase 16 isoform 1	445	Extracellular (Potential).|Hemopexin-like 3.				collagen catabolic process|proteolysis	cell surface|integral to plasma membrane|proteinaceous extracellular matrix	calcium ion binding|enzyme activator activity|metalloendopeptidase activity|zinc ion binding			upper_aerodigestive_tract(2)|ovary(2)|central_nervous_system(1)|urinary_tract(1)|skin(1)|kidney(1)	8						GACGTCCTCCCACCAAATGGC	0.418000													27	112					0	0	1	0	0
SLC26A7	115111	broad.mit.edu	37	8	92364054	92364054	+	Missense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr8:92364054C>G	uc003yex.2	+	11	1435	c.1157C>G	c.(1156-1158)TCT>TGT	p.S386C	SLC26A7_uc003yey.2_RNA|SLC26A7_uc003yez.2_Missense_Mutation_p.S386C|SLC26A7_uc003yfa.2_Missense_Mutation_p.S386C	NM_052832	NP_439897	Q8TE54	S26A7_HUMAN	solute carrier family 26, member 7 isoform a	386	Helical; (Potential).					basolateral plasma membrane|integral to membrane|recycling endosome membrane	anion:anion antiporter activity|bicarbonate transmembrane transporter activity|chloride channel activity|oxalate transmembrane transporter activity|sulfate transmembrane transporter activity			ovary(2)	2			BRCA - Breast invasive adenocarcinoma(11;0.00802)			TGTCTAATATCTTGCATTTTC	0.363000													6	232					0	0	1	0	0
MTDH	92140	broad.mit.edu	37	8	98718922	98718922	+	Missense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr8:98718922G>C	uc003yhz.2	+	8	1544	c.1216G>C	c.(1216-1218)GAC>CAC	p.D406H	MTDH_uc010mbf.2_RNA	NM_178812	NP_848927	Q86UE4	LYRIC_HUMAN	metadherin	406	Lung-homing for mammary tumors (By similarity).|Cytoplasmic (Potential).				lipopolysaccharide-mediated signaling pathway|negative regulation of apoptosis|negative regulation of transcription from RNA polymerase II promoter|positive regulation of angiogenesis|positive regulation of autophagy|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of NF-kappaB transcription factor activity|positive regulation of protein kinase B signaling cascade	apical plasma membrane|endoplasmic reticulum membrane|integral to membrane|intercellular canaliculus|nuclear body|nuclear membrane|nucleolus|perinuclear region of cytoplasm|tight junction	NF-kappaB binding|RNA polymerase II transcription factor binding|transcription coactivator activity			liver(1)|central_nervous_system(1)	2	Breast(36;2.56e-06)		OV - Ovarian serous cystadenocarcinoma(57;0.178)			CAATTGGGTAGACGAAGAAAG	0.413000													3	168					0	0	1	0	0
NIPAL2	79815	broad.mit.edu	37	8	99208193	99208193	+	Silent	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr8:99208193G>A	uc003yil.1	-	9	1177	c.921C>T	c.(919-921)CTC>CTT	p.L307L	NIPAL2_uc011lgw.1_Silent_p.L103L|NIPAL2_uc003yim.1_Silent_p.L307L	NM_024759	NP_079035	Q9H841	NPAL2_HUMAN	NIPA-like domain containing 2	307	Helical; (Potential).					integral to membrane					0						TAAATACAGTGAGAAAAGGAG	0.328000													6	50					0	0	1	0	0
NIPAL2	79815	broad.mit.edu	37	8	99264812	99264812	+	Silent	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr8:99264812G>A	uc003yil.1	-	3	511	c.255C>T	c.(253-255)TTC>TTT	p.F85F	NIPAL2_uc011lgw.1_5'Flank|NIPAL2_uc003yim.1_Silent_p.F85F	NM_024759	NP_079035	Q9H841	NPAL2_HUMAN	NIPA-like domain containing 2	85						integral to membrane					0						GCACACTCTTGAAGTATGGCC	0.493000													19	66					0	0	1	0	0
RGS22	26166	broad.mit.edu	37	8	101078512	101078512	+	Missense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr8:101078512G>C	uc003yjb.1	-	7	802	c.607C>G	c.(607-609)CAA>GAA	p.Q203E	RGS22_uc003yja.1_Missense_Mutation_p.Q22E|RGS22_uc003yjc.1_Missense_Mutation_p.Q191E|RGS22_uc011lgz.1_RNA|RGS22_uc010mbo.1_RNA	NM_015668	NP_056483	Q8NE09	RGS22_HUMAN	regulator of G-protein signaling 22	203					negative regulation of signal transduction	cytoplasm|plasma membrane	GTPase activator activity|signal transducer activity			ovary(3)|skin(2)|breast(1)|central_nervous_system(1)	7			Epithelial(11;6.71e-08)|all cancers(13;4.19e-06)|OV - Ovarian serous cystadenocarcinoma(57;0.000469)|STAD - Stomach adenocarcinoma(118;0.169)			TCTTTTGTTTGAGTATAGGAA	0.343000													47	131					0	0	1	0	0
NACAP1	83955	broad.mit.edu	37	8	102381238	102381238	+	Nonsense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr8:102381238C>G	uc003ykc.1	+	1	118	c.101C>G	c.(100-102)TCA>TGA	p.S34*	NACAP1_uc010mbs.1_RNA	NR_002182				SubName: Full=NACAP1 protein;												0						AGTGATGAGTCAGTACCAGAG	0.512000													3	82					0	0	1	0	0
UBR5	51366	broad.mit.edu	37	8	103317436	103317436	+	Missense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr8:103317436C>G	uc003ykr.1	-	21	2737	c.2704G>C	c.(2704-2706)GAG>CAG	p.E902Q	UBR5_uc003yks.1_Missense_Mutation_p.E902Q	NM_015902	NP_056986	O95071	UBR5_HUMAN	ubiquitin protein ligase E3 component n-recognin	902					cell proliferation|positive regulation of canonical Wnt receptor signaling pathway|positive regulation of catenin import into nucleus|positive regulation of protein import into nucleus, translocation|progesterone receptor signaling pathway|protein polyubiquitination|protein ubiquitination involved in ubiquitin-dependent protein catabolic process|response to DNA damage stimulus	nucleus|soluble fraction	protein binding|RNA binding|ubiquitin-ubiquitin ligase activity|zinc ion binding			lung(16)|ovary(4)|large_intestine(3)|breast(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|kidney(1)	28	all_cancers(14;8e-07)|all_epithelial(15;2.18e-08)|Lung NSC(17;2.55e-05)|all_lung(17;8.85e-05)		OV - Ovarian serous cystadenocarcinoma(57;0.000442)			AGATTCTGCTCTAAAACAACC	0.418000													5	249					0	0	1	0	0
KLF10	7071	broad.mit.edu	37	8	103664550	103664550	+	Missense_Mutation	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr8:103664550C>T	uc011lhk.1	-	2	266	c.112G>A	c.(112-114)GAT>AAT	p.D38N	KLF10_uc011lhj.1_Missense_Mutation_p.D27N	NM_005655	NP_005646	Q13118	KLF10_HUMAN	Kruppel-like factor 10 isoform a	38					cell proliferation|cell-cell signaling|negative regulation of cell proliferation|negative regulation of transcription from RNA polymerase II promoter|skeletal system development|transforming growth factor beta receptor signaling pathway	nucleus	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0	all_epithelial(15;5.63e-07)|Lung NSC(17;8.18e-05)|all_lung(17;0.000169)		OV - Ovarian serous cystadenocarcinoma(57;0.000112)|STAD - Stomach adenocarcinoma(118;0.0826)			GCTTCAAAATCACTTTTCTCT	0.358000													49	158					0	0	1	0	0
SYBU	55638	broad.mit.edu	37	8	110590118	110590118	+	Missense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr8:110590118G>C	uc003ynj.3	-	6	1026	c.863C>G	c.(862-864)TCT>TGT	p.S288C	SYBU_uc003yni.3_Missense_Mutation_p.S285C|SYBU_uc003ynk.3_Missense_Mutation_p.S169C|SYBU_uc010mco.2_Missense_Mutation_p.S287C|SYBU_uc003ynl.3_Missense_Mutation_p.S287C|SYBU_uc010mcp.2_Missense_Mutation_p.S288C|SYBU_uc010mcq.2_Missense_Mutation_p.S288C|SYBU_uc003yno.3_Missense_Mutation_p.S169C|SYBU_uc010mcr.2_Missense_Mutation_p.S288C|SYBU_uc003ynm.3_Missense_Mutation_p.S287C|SYBU_uc003ynn.3_Missense_Mutation_p.S287C|SYBU_uc010mcs.2_Missense_Mutation_p.S169C|SYBU_uc010mct.2_Missense_Mutation_p.S288C|SYBU_uc010mcu.2_Missense_Mutation_p.S287C|SYBU_uc003ynp.3_Missense_Mutation_p.S220C|SYBU_uc010mcv.2_Missense_Mutation_p.S288C|SYBU_uc003ynh.3_Missense_Mutation_p.S82C|SYBU_uc011lhw.1_Missense_Mutation_p.S158C	NM_001099754	NP_001093224	Q9NX95	SYBU_HUMAN	Golgi-localized syntaphilin-related protein	288	Potential.|Sufficient for interaction with KIF5B.					cytoplasmic membrane-bounded vesicle|cytoskeleton|Golgi membrane|integral to membrane				ovary(1)	1						TCGGCGCTCAGATTCCTTCAG	0.463000													3	164					0	0	1	0	0
WDR67	93594	broad.mit.edu	37	8	124140567	124140567	+	Missense_Mutation	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr8:124140567G>A	uc003ypp.1	+	14	2021	c.1931G>A	c.(1930-1932)AGA>AAA	p.R644K	WDR67_uc011lig.1_Missense_Mutation_p.R644K|WDR67_uc011lih.1_Missense_Mutation_p.R534K|WDR67_uc003ypq.1_RNA|WDR67_uc003yps.1_Intron|WDR67_uc003ypt.1_Missense_Mutation_p.R101K|WDR67_uc003ypu.1_Missense_Mutation_p.R101K	NM_145647	NP_663622	Q96DN5	WDR67_HUMAN	WD repeat domain 67 isoform 1	644						centrosome	Rab GTPase activator activity			skin(1)	1	Lung NSC(37;7e-10)|Ovarian(258;0.0205)		STAD - Stomach adenocarcinoma(47;0.00527)			GTTGTGATTAGACAAGTTTAT	0.363000													42	122					0	0	1	0	0
WDR67	93594	broad.mit.edu	37	8	124146362	124146362	+	Missense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr8:124146362G>C	uc003ypp.1	+	17	2505	c.2415G>C	c.(2413-2415)ATG>ATC	p.M805I	WDR67_uc011lig.1_Intron|WDR67_uc011lih.1_Missense_Mutation_p.M695I|WDR67_uc003ypq.1_RNA|WDR67_uc003yps.1_Missense_Mutation_p.M439I|WDR67_uc003ypt.1_Missense_Mutation_p.M262I|WDR67_uc003ypu.1_Missense_Mutation_p.M262I	NM_145647	NP_663622	Q96DN5	WDR67_HUMAN	WD repeat domain 67 isoform 1	805	Potential.					centrosome	Rab GTPase activator activity			skin(1)	1	Lung NSC(37;7e-10)|Ovarian(258;0.0205)		STAD - Stomach adenocarcinoma(47;0.00527)			AGGTATATATGAGAGATCGAG	0.328000													19	93					0	0	1	0	0
ZHX1	11244	broad.mit.edu	37	8	124267638	124267638	+	Missense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr8:124267638G>C	uc003yqe.2	-	3	979	c.549C>G	c.(547-549)ATC>ATG	p.I183M	C8orf76_uc003yqd.2_Intron|ZHX1_uc003yqf.2_Missense_Mutation_p.I183M|ZHX1_uc003yqg.2_Intron|ZHX1_uc010mdi.2_Missense_Mutation_p.I183M	NM_007222	NP_009153	Q9UKY1	ZHX1_HUMAN	zinc fingers and homeoboxes 1	183					negative regulation of transcription, DNA-dependent	nucleus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)	1	Lung NSC(37;1.25e-09)|Ovarian(258;0.0154)		STAD - Stomach adenocarcinoma(47;0.00527)			TCATTTTCATGATAGGAGTTT	0.353000													44	121					0	0	1	0	0
MTSS1	9788	broad.mit.edu	37	8	125565852	125565852	+	Missense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr8:125565852C>G	uc003yrk.2	-	14	2183	c.1649G>C	c.(1648-1650)AGA>ACA	p.R550T	NDUFB9_uc011lim.1_Intron|MTSS1_uc003yrh.2_Missense_Mutation_p.R199T|MTSS1_uc011lin.1_Missense_Mutation_p.R324T|MTSS1_uc011lio.1_Missense_Mutation_p.R440T|MTSS1_uc003yri.2_Missense_Mutation_p.R268T|MTSS1_uc003yrj.2_Missense_Mutation_p.R525T|MTSS1_uc003yrl.2_Missense_Mutation_p.R554T	NM_014751	NP_055566	O43312	MTSS1_HUMAN	metastasis suppressor 1	550					actin cytoskeleton organization|cell adhesion|cellular component movement|filopodium assembly|transmembrane receptor protein tyrosine kinase signaling pathway	actin cytoskeleton|endocytic vesicle|ruffle	actin monomer binding|cytoskeletal adaptor activity|receptor binding|SH3 domain binding			ovary(1)	1	Ovarian(258;0.00438)|all_neural(195;0.00459)|Hepatocellular(40;0.108)		STAD - Stomach adenocarcinoma(47;0.00288)			GTCGCTGTTTCTTGGAATGGT	0.507000													6	41					0	0	1	0	0
KIAA0196	9897	broad.mit.edu	37	8	126051122	126051122	+	Missense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr8:126051122C>G	uc003yrt.2	-	25	3363	c.3034G>C	c.(3034-3036)GAA>CAA	p.E1012Q	KIAA0196_uc011lir.1_Missense_Mutation_p.E864Q|KIAA0196_uc003yru.1_Missense_Mutation_p.E586Q	NM_014846	NP_055661	Q12768	STRUM_HUMAN	strumpellin	1012					cell death	WASH complex				ovary(2)	2	Ovarian(258;0.0028)|all_neural(195;0.00294)|Hepatocellular(40;0.108)		STAD - Stomach adenocarcinoma(47;0.000918)|COAD - Colon adenocarcinoma(160;0.205)			GCTGTGATTTCATATAAAAGT	0.438000													56	182					0	0	1	0	0
ADCY8	114	broad.mit.edu	37	8	131964194	131964194	+	Silent	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr8:131964194G>A	uc003ytd.3	-	3	1417	c.1161C>T	c.(1159-1161)ATC>ATT	p.I387I	ADCY8_uc010mds.2_Silent_p.I387I	NM_001115	NP_001106	P40145	ADCY8_HUMAN	adenylate cyclase 8	387	Cytoplasmic (Potential).				activation of adenylate cyclase activity by G-protein signaling pathway|activation of phospholipase C activity|activation of protein kinase A activity|cellular response to glucagon stimulus|energy reserve metabolic process|inhibition of adenylate cyclase activity by G-protein signaling pathway|nerve growth factor receptor signaling pathway|synaptic transmission|transmembrane transport|water transport	integral to membrane|membrane fraction|plasma membrane	ATP binding|calcium- and calmodulin-responsive adenylate cyclase activity|metal ion binding			skin(4)|large_intestine(1)|central_nervous_system(1)	6	Esophageal squamous(12;0.00693)|Ovarian(258;0.00707)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.000538)			TCATGTCGTTGATCATTTCCA	0.522000										HNSCC(32;0.087)			21	62					0	0	1	0	0
EPPK1	83481	broad.mit.edu	37	8	144945860	144945860	+	Nonsense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr8:144945860G>C	uc003zaa.1	-	1	1575	c.1562C>G	c.(1561-1563)TCA>TGA	p.S521*		NM_031308	NP_112598	P58107	EPIPL_HUMAN	epiplakin 1	521						cytoplasm|cytoskeleton	protein binding|structural molecule activity			pancreas(1)|skin(1)	2	all_cancers(97;1.42e-10)|all_epithelial(106;1.99e-09)|Lung NSC(106;0.000126)|all_lung(105;0.000354)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;2.46e-41)|Epithelial(56;2.88e-40)|all cancers(56;1.82e-35)|Colorectal(110;0.055)|BRCA - Breast invasive adenocarcinoma(115;0.105)			CCTCTGCTCTGAGGAGATGGC	0.682000													6	13					0	0	1	0	0
PLEC	5339	broad.mit.edu	37	8	144997172	144997172	+	Missense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr8:144997172C>G	uc003zaf.1	-	31	7506	c.7336G>C	c.(7336-7338)GAG>CAG	p.E2446Q	PLEC_uc003zab.1_Missense_Mutation_p.E2309Q|PLEC_uc003zac.1_Missense_Mutation_p.E2313Q|PLEC_uc003zad.2_Missense_Mutation_p.E2309Q|PLEC_uc003zae.1_Missense_Mutation_p.E2277Q|PLEC_uc003zag.1_Missense_Mutation_p.E2287Q|PLEC_uc003zah.2_Missense_Mutation_p.E2295Q|PLEC_uc003zaj.2_Missense_Mutation_p.E2336Q	NM_201380	NP_958782	Q15149	PLEC_HUMAN	plectin isoform 1	2446	Central fibrous rod domain.|Potential.				cellular component disassembly involved in apoptosis|hemidesmosome assembly	cytosol|focal adhesion|hemidesmosome|intermediate filament cytoskeleton|sarcolemma	actin binding|structural constituent of muscle|structural constituent of muscle			large_intestine(2)|ovary(2)|pancreas(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	9						AGCATCTTCTCTGCCAAGGCC	0.677000													3	22					0	0	1	0	0
PLEC	5339	broad.mit.edu	37	8	144997494	144997494	+	Missense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr8:144997494C>G	uc003zaf.1	-	31	7184	c.7014G>C	c.(7012-7014)CAG>CAC	p.Q2338H	PLEC_uc003zab.1_Missense_Mutation_p.Q2201H|PLEC_uc003zac.1_Missense_Mutation_p.Q2205H|PLEC_uc003zad.2_Missense_Mutation_p.Q2201H|PLEC_uc003zae.1_Missense_Mutation_p.Q2169H|PLEC_uc003zag.1_Missense_Mutation_p.Q2179H|PLEC_uc003zah.2_Missense_Mutation_p.Q2187H|PLEC_uc003zaj.2_Missense_Mutation_p.Q2228H	NM_201380	NP_958782	Q15149	PLEC_HUMAN	plectin isoform 1	2338	Central fibrous rod domain.|Potential.				cellular component disassembly involved in apoptosis|hemidesmosome assembly	cytosol|focal adhesion|hemidesmosome|intermediate filament cytoskeleton|sarcolemma	actin binding|structural constituent of muscle|structural constituent of muscle			large_intestine(2)|ovary(2)|pancreas(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	9						GCAGGTTCTTCTGGTGGTCGG	0.657000													5	18					0	0	1	0	0
PLEC	5339	broad.mit.edu	37	8	144997691	144997691	+	Missense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr8:144997691C>G	uc003zaf.1	-	31	6987	c.6817G>C	c.(6817-6819)GAG>CAG	p.E2273Q	PLEC_uc003zab.1_Missense_Mutation_p.E2136Q|PLEC_uc003zac.1_Missense_Mutation_p.E2140Q|PLEC_uc003zad.2_Missense_Mutation_p.E2136Q|PLEC_uc003zae.1_Missense_Mutation_p.E2104Q|PLEC_uc003zag.1_Missense_Mutation_p.E2114Q|PLEC_uc003zah.2_Missense_Mutation_p.E2122Q|PLEC_uc003zaj.2_Missense_Mutation_p.E2163Q	NM_201380	NP_958782	Q15149	PLEC_HUMAN	plectin isoform 1	2273	Central fibrous rod domain.|Potential.				cellular component disassembly involved in apoptosis|hemidesmosome assembly	cytosol|focal adhesion|hemidesmosome|intermediate filament cytoskeleton|sarcolemma	actin binding|structural constituent of muscle|structural constituent of muscle			large_intestine(2)|ovary(2)|pancreas(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	9						CGCAGCTTCTCTGCAGCCGCC	0.721000													3	9					0	0	1	0	0
PLEC	5339	broad.mit.edu	37	8	144999689	144999689	+	Missense_Mutation	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr8:144999689C>T	uc003zaf.1	-	31	4989	c.4819G>A	c.(4819-4821)GGG>AGG	p.G1607R	PLEC_uc003zab.1_Missense_Mutation_p.G1470R|PLEC_uc003zac.1_Missense_Mutation_p.G1474R|PLEC_uc003zad.2_Missense_Mutation_p.G1470R|PLEC_uc003zae.1_Missense_Mutation_p.G1438R|PLEC_uc003zag.1_Missense_Mutation_p.G1448R|PLEC_uc003zah.2_Missense_Mutation_p.G1456R|PLEC_uc003zaj.2_Missense_Mutation_p.G1497R	NM_201380	NP_958782	Q15149	PLEC_HUMAN	plectin isoform 1	1607	Central fibrous rod domain.|Potential.				cellular component disassembly involved in apoptosis|hemidesmosome assembly	cytosol|focal adhesion|hemidesmosome|intermediate filament cytoskeleton|sarcolemma	actin binding|structural constituent of muscle|structural constituent of muscle			large_intestine(2)|ovary(2)|pancreas(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	9						CCCTCAGCCCCGCCACGCTGG	0.731000													7	8					0	0	1	0	0
C9orf66	157983	broad.mit.edu	37	9	214587	214587	+	Silent	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr9:214587C>G	uc003zge.3	-	1	1307	c.810G>C	c.(808-810)GCG>GCC	p.A270A	DOCK8_uc011lls.1_5'Flank|DOCK8_uc003zgf.2_5'Flank	NM_152569	NP_689782	Q5T8R8	CI066_HUMAN	hypothetical protein LOC157983	270										central_nervous_system(1)	1	all_lung(41;0.218)	all_cancers(5;2.09e-12)|all_epithelial(5;6.16e-09)|all_lung(10;1.15e-08)|Lung NSC(10;1.91e-08)|Acute lymphoblastic leukemia(5;0.00457)|all_hematologic(5;0.0332)|Breast(48;0.0646)|Prostate(43;0.137)	Kidney(42;0.112)|KIRC - Kidney renal clear cell carcinoma(5;0.157)	all cancers(5;0.000704)|Lung(218;0.00755)|GBM - Glioblastoma multiforme(5;0.0149)|Epithelial(6;0.0154)		CTGGCAGCCTCGCAGCTTCGG	0.677000													19	56					0	0	1	0	0
KIAA0020	9933	broad.mit.edu	37	9	2837402	2837402	+	Splice_Site	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr9:2837402C>G	uc003zhp.1	-	3	179	c.83_splice	c.e3-1	p.D28_splice	KIAA0020_uc010mhc.1_Splice_Site_p.N27_splice|KIAA0020_uc003zhq.1_Splice_Site_p.D28_splice	NM_014878	NP_055693	Q15397	K0020_HUMAN	KIAA0020 protein							endoplasmic reticulum|nucleolus	RNA binding			ovary(1)	1				GBM - Glioblastoma multiforme(50;0.0319)		GAACCAGAATCTAGTGACAAT	0.318000													16	67					0	0	1	0	0
RFX3	5991	broad.mit.edu	37	9	3277378	3277378	+	Missense_Mutation	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr9:3277378G>A	uc003zhr.2	-	9	1247	c.935C>T	c.(934-936)ACT>ATT	p.T312I	RFX3_uc010mhd.2_Missense_Mutation_p.T312I|RFX3_uc003zhs.1_Missense_Mutation_p.T312I|RFX3_uc003zht.1_Missense_Mutation_p.T312I|RFX3_uc010mhe.1_Missense_Mutation_p.T287I	NM_134428	NP_602304	P48380	RFX3_HUMAN	regulatory factor X3 isoform b	312					cell maturation|ciliary cell motility|cilium assembly|cilium movement involved in determination of left/right asymmetry|endocrine pancreas development|negative regulation of transcription, DNA-dependent|positive regulation of transcription from RNA polymerase II promoter|positive regulation of type B pancreatic cell development|regulation of insulin secretion	nuclear chromatin	protein binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|transcription regulatory region DNA binding			ovary(2)|central_nervous_system(1)|pancreas(1)	4				GBM - Glioblastoma multiforme(50;0.00124)|Lung(2;0.0337)		GGCAATTACAGTTTGCTCAAC	0.393000													35	138					0	0	1	0	0
RFX3	5991	broad.mit.edu	37	9	3277390	3277390	+	Missense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr9:3277390G>C	uc003zhr.2	-	9	1235	c.923C>G	c.(922-924)TCT>TGT	p.S308C	RFX3_uc010mhd.2_Missense_Mutation_p.S308C|RFX3_uc003zhs.1_Missense_Mutation_p.S308C|RFX3_uc003zht.1_Missense_Mutation_p.S308C|RFX3_uc010mhe.1_Missense_Mutation_p.S283C	NM_134428	NP_602304	P48380	RFX3_HUMAN	regulatory factor X3 isoform b	308					cell maturation|ciliary cell motility|cilium assembly|cilium movement involved in determination of left/right asymmetry|endocrine pancreas development|negative regulation of transcription, DNA-dependent|positive regulation of transcription from RNA polymerase II promoter|positive regulation of type B pancreatic cell development|regulation of insulin secretion	nuclear chromatin	protein binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|transcription regulatory region DNA binding			ovary(2)|central_nervous_system(1)|pancreas(1)	4				GBM - Glioblastoma multiforme(50;0.00124)|Lung(2;0.0337)		TTGCTCAACAGATGTGCCTGT	0.373000													31	139					0	0	1	0	0
KIAA1432	57589	broad.mit.edu	37	9	5770130	5770130	+	Silent	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr9:5770130G>A	uc003zji.2	+	22	3324	c.3231G>A	c.(3229-3231)TTG>TTA	p.L1077L	KIAA1432_uc003zjl.3_Silent_p.L1040L|ERMP1_uc011lme.1_Intron	NM_020829	NP_065880	Q4ADV7	RIC1_HUMAN	connexin 43-interacting protein 150 isoform a	1156						integral to membrane					0		Acute lymphoblastic leukemia(23;0.154)		GBM - Glioblastoma multiforme(50;0.000525)|Lung(218;0.122)		ACCCATTTTTGAACCTTGAGA	0.488000													4	59					0	0	1	0	0
KIAA1432	57589	broad.mit.edu	37	9	5774025	5774025	+	Missense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr9:5774025G>C	uc003zji.2	+	25	3907	c.3814G>C	c.(3814-3816)GAG>CAG	p.E1272Q	KIAA1432_uc003zjl.3_Missense_Mutation_p.E1235Q|ERMP1_uc011lme.1_Intron	NM_020829	NP_065880	Q4ADV7	RIC1_HUMAN	connexin 43-interacting protein 150 isoform a	1351						integral to membrane					0		Acute lymphoblastic leukemia(23;0.154)		GBM - Glioblastoma multiforme(50;0.000525)|Lung(218;0.122)		GATAACAGAAGAGCAGGTCCA	0.478000													20	51					0	0	1	0	0
UHRF2	115426	broad.mit.edu	37	9	6421009	6421009	+	Missense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr9:6421009C>G	uc003zjy.2	+	2	591	c.251C>G	c.(250-252)TCT>TGT	p.S84C	UHRF2_uc003zjz.2_RNA	NM_152896	NP_690856	Q96PU4	UHRF2_HUMAN	ubiquitin-like with PHD and ring finger domains	84					cell cycle|cell differentiation|cell proliferation|protein autoubiquitination|regulation of cell cycle|ubiquitin-dependent protein catabolic process	nucleus	DNA binding|histone binding|ubiquitin-protein ligase activity|zinc ion binding			large_intestine(2)|ovary(1)	3		Acute lymphoblastic leukemia(23;0.158)		GBM - Glioblastoma multiforme(50;0.0392)|Lung(218;0.129)		CCTGGCACATCTACACAGATT	0.433000													27	116					0	0	1	0	0
MLLT3	4300	broad.mit.edu	37	9	20414065	20414065	+	Nonsense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr9:20414065G>C	uc003zoe.2	-	5	1038	c.779C>G	c.(778-780)TCA>TGA	p.S260*	MLLT3_uc011lne.1_Nonsense_Mutation_p.S228*|MLLT3_uc011lnf.1_Nonsense_Mutation_p.S257*|MLLT3_uc003zof.2_Nonsense_Mutation_p.S61*	NM_004529	NP_004520	P42568	AF9_HUMAN	myeloid/lymphoid or mixed-lineage leukemia	260					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	protein binding			lung(2)|ovary(1)	3				GBM - Glioblastoma multiforme(3;4.35e-105)|Lung(42;3.48e-06)|LUSC - Lung squamous cell carcinoma(42;7.92e-05)		TGGCTCTTTTGACATGGGTTT	0.398000			T	MLL	ALL								107	346					0	0	1	0	0
C9orf131	138724	broad.mit.edu	37	9	35043372	35043372	+	Missense_Mutation	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr9:35043372C>T	uc003zvw.2	+	2	775	c.746C>T	c.(745-747)TCA>TTA	p.S249L	C9orf131_uc003zvu.2_Missense_Mutation_p.S201L|C9orf131_uc003zvv.2_Missense_Mutation_p.S176L|C9orf131_uc003zvx.2_Missense_Mutation_p.S214L	NM_203299	NP_976044	Q5VYM1	CI131_HUMAN	hypothetical protein LOC138724 isoform A	249											0	all_epithelial(49;0.22)		LUSC - Lung squamous cell carcinoma(32;0.00117)|Lung(28;0.00309)			TATCACTCCTCAGCCCAGTTT	0.527000													43	157					0	0	1	0	0
ZFAND5	7763	broad.mit.edu	37	9	74975618	74975618	+	Missense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr9:74975618G>C	uc004aiv.2	-	2	355	c.77C>G	c.(76-78)ACA>AGA	p.T26R	ZFAND5_uc010mox.1_5'Flank|ZFAND5_uc010moy.1_Missense_Mutation_p.T26R|ZFAND5_uc004aix.2_Missense_Mutation_p.T26R|ZFAND5_uc004aiw.2_Missense_Mutation_p.T26R|ZFAND5_uc004aiy.2_Missense_Mutation_p.T26R	NM_006007	NP_005998	O76080	ZFAN5_HUMAN	zinc finger, AN1-type domain 5	26	A20-type.						DNA binding|zinc ion binding				0						CATTCCATTTGTCCTAGGATT	0.438000													5	268					0	0	1	0	0
VPS13A	23230	broad.mit.edu	37	9	79952270	79952270	+	Missense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr9:79952270G>C	uc004akr.2	+	47	6455	c.6195G>C	c.(6193-6195)AAG>AAC	p.K2065N	VPS13A_uc004akp.3_Missense_Mutation_p.K2065N|VPS13A_uc004akq.3_Missense_Mutation_p.K2065N|VPS13A_uc004aks.2_Missense_Mutation_p.K2026N|VPS13A_uc004akt.2_Missense_Mutation_p.K405N	NM_033305	NP_150648	Q96RL7	VP13A_HUMAN	vacuolar protein sorting 13A isoform A	2065					Golgi to endosome transport|protein transport	intracellular	protein binding			pancreas(3)|skin(3)|ovary(2)|large_intestine(1)|central_nervous_system(1)	10						TTCTAAAGAAGAAATGTAGAT	0.303000													15	40					0	0	1	0	0
AGTPBP1	23287	broad.mit.edu	37	9	88203305	88203305	+	Silent	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr9:88203305G>C	uc011ltd.1	-	20	2844	c.2811C>G	c.(2809-2811)CTC>CTG	p.L937L	AGTPBP1_uc004aod.3_Silent_p.L563L|AGTPBP1_uc011ltc.1_Intron|AGTPBP1_uc010mqc.2_Silent_p.L897L|AGTPBP1_uc011lte.1_Silent_p.L949L	NM_015239	NP_056054	Q9UPW5	CBPC1_HUMAN	ATP/GTP binding protein 1	937					C-terminal protein deglutamylation|cerebellar Purkinje cell differentiation|eye photoreceptor cell differentiation|mitochondrion organization|neuromuscular process|olfactory bulb development|protein side chain deglutamylation|proteolysis	cytosol|mitochondrion|nucleus	metallocarboxypeptidase activity|tubulin binding|zinc ion binding			ovary(4)|large_intestine(2)|skin(1)	7						TATTGCTCATGAGATATTCCA	0.388000													26	59					0	0	1	0	0
ASPN	54829	broad.mit.edu	37	9	95219736	95219736	+	Missense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr9:95219736C>G	uc004ase.1	-	8	1221	c.977G>C	c.(976-978)AGA>ACA	p.R326T	CENPP_uc004arz.2_Intron|CENPP_uc010mqx.2_Intron|ASPN_uc010mqy.1_3'UTR	NM_017680	NP_060150	Q9BXN1	ASPN_HUMAN	asporin precursor	326	LRR 9.				bone mineralization|negative regulation of tooth mineralization|negative regulation of transforming growth factor beta receptor signaling pathway	proteinaceous extracellular matrix	calcium ion binding				0						TACTCCCACTCTTGCAATTGA	0.348000													16	64					0	0	1	0	0
BICD2	23299	broad.mit.edu	37	9	95481579	95481579	+	Missense_Mutation	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr9:95481579G>A	uc004aso.1	-	5	1405	c.1348C>T	c.(1348-1350)CGC>TGC	p.R450C	BICD2_uc004asp.1_Missense_Mutation_p.R450C	NM_015250	NP_056065	Q8TD16	BICD2_HUMAN	bicaudal D homolog 2 isoform 2	450	Potential.				microtubule anchoring at microtubule organizing center|minus-end-directed organelle transport along microtubule	cytoplasmic vesicle|cytoskeleton|Golgi apparatus|plasma membrane	Rab GTPase binding			skin(1)	1						AGCTGCTCGCGGAGCTCGCCA	0.642000													11	42					0	0	1	0	0
BICD2	23299	broad.mit.edu	37	9	95484983	95484983	+	Silent	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr9:95484983C>T	uc004aso.1	-	3	618	c.561G>A	c.(559-561)GAG>GAA	p.E187E	BICD2_uc004asp.1_Silent_p.E187E	NM_015250	NP_056065	Q8TD16	BICD2_HUMAN	bicaudal D homolog 2 isoform 2	187	Potential.				microtubule anchoring at microtubule organizing center|minus-end-directed organelle transport along microtubule	cytoplasmic vesicle|cytoskeleton|Golgi apparatus|plasma membrane	Rab GTPase binding			skin(1)	1						GGCTGATGTTCTCCTCCTCCA	0.577000													12	47					0	0	1	0	0
BICD2	23299	broad.mit.edu	37	9	95484988	95484988	+	Missense_Mutation	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr9:95484988C>T	uc004aso.1	-	3	613	c.556G>A	c.(556-558)GAG>AAG	p.E186K	BICD2_uc004asp.1_Missense_Mutation_p.E186K	NM_015250	NP_056065	Q8TD16	BICD2_HUMAN	bicaudal D homolog 2 isoform 2	186	Potential.				microtubule anchoring at microtubule organizing center|minus-end-directed organelle transport along microtubule	cytoplasmic vesicle|cytoskeleton|Golgi apparatus|plasma membrane	Rab GTPase binding			skin(1)	1						ATGTTCTCCTCCTCCAGTTCC	0.577000													13	49					0	0	1	0	0
ZNF484	83744	broad.mit.edu	37	9	95610231	95610231	+	Nonsense_Mutation	SNP	C	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr9:95610231C>A	uc004asu.1	-	5	987	c.838G>T	c.(838-840)GAA>TAA	p.E280*	ANKRD19_uc004asr.3_Intron|ZNF484_uc011lub.1_Nonsense_Mutation_p.E282*|ZNF484_uc010mrb.1_Nonsense_Mutation_p.E244*|ZNF484_uc004asv.1_Nonsense_Mutation_p.E244*	NM_031486	NP_113674	Q5JVG2	ZN484_HUMAN	zinc finger protein 484 isoform a	280	C2H2-type 2; degenerate.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						TCATGGCATTCATGCTGCTTT	0.428000													26	83					1.1804e-14	1.22849e-14	1	1	0
C9orf3	84909	broad.mit.edu	37	9	97741653	97741653	+	Missense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr9:97741653G>C	uc004ava.2	+	10	2056	c.1921G>C	c.(1921-1923)GAG>CAG	p.E641Q	C9orf3_uc004auy.2_Missense_Mutation_p.E542Q|C9orf3_uc004auz.1_Missense_Mutation_p.E542Q|C9orf3_uc004avc.2_Missense_Mutation_p.E96Q	NM_032823	NP_116212	Q8N6M6	AMPO_HUMAN	aminopeptidase O	641					leukotriene biosynthetic process|proteolysis	cytoplasm	aminopeptidase activity|metallopeptidase activity|zinc ion binding			ovary(1)	1				OV - Ovarian serous cystadenocarcinoma(323;0.000275)		CTAAAGGCTTGAGCTGTCTGT	0.393000													2	9					0	0	1	0	0
FANCC	2176	broad.mit.edu	37	9	97873838	97873838	+	Silent	SNP	C	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr9:97873838C>A	uc004avh.2	-	13	1498	c.1236G>T	c.(1234-1236)CTG>CTT	p.L412L	FANCC_uc004avi.3_Silent_p.L412L	NM_000136	NP_000127	Q00597	FANCC_HUMAN	Fanconi anemia, complementation group C	412					protein complex assembly	cytosol|nucleoplasm	protein binding			kidney(1)	1		Acute lymphoblastic leukemia(62;0.138)				CTGCCGACATCAGTAATTGCT	0.592000			D|Mis|N|F|S			AML|leukemia		Genes_defective_in_diseases_associated_with_sensitivity_to_DNA_damaging_agents|Involved_in_tolerance_or_repair_of_DNA_crosslinks	Fanconi_Anemia				4	113					0.150653	0.151018	1	1	0
PTCH1	5727	broad.mit.edu	37	9	98242341	98242341	+	Missense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr9:98242341C>G	uc004avk.3	-	7	1165	c.977G>C	c.(976-978)GGA>GCA	p.G326A	PTCH1_uc010mro.2_Missense_Mutation_p.G175A|PTCH1_uc010mrp.2_Missense_Mutation_p.G175A|PTCH1_uc010mrq.2_Missense_Mutation_p.G175A|PTCH1_uc004avl.3_Missense_Mutation_p.G175A|PTCH1_uc010mrr.2_Missense_Mutation_p.G260A|PTCH1_uc004avm.3_Missense_Mutation_p.G325A|PTCH1_uc010mrs.1_Missense_Mutation_p.G46A	NM_000264	NP_000255	Q13635	PTC1_HUMAN	patched isoform L	326	Extracellular (Potential).				embryonic limb morphogenesis|negative regulation of multicellular organism growth|protein processing|regulation of smoothened signaling pathway|smoothened signaling pathway	integral to plasma membrane	hedgehog receptor activity			skin(242)|central_nervous_system(72)|bone(33)|upper_aerodigestive_tract(11)|lung(6)|large_intestine(4)|breast(4)|oesophagus(3)|ovary(3)|vulva(1)	379		Medulloblastoma(1;7.87e-06)|all_neural(1;0.000555)|Acute lymphoblastic leukemia(62;0.136)				GCCATGACATCCACCATTCAA	0.393000									Basal_Cell_Nevus_syndrome				30	114					0	0	1	0	0
HABP4	22927	broad.mit.edu	37	9	99250527	99250527	+	Missense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr9:99250527G>C	uc010msg.2	+	7	1304	c.1156G>C	c.(1156-1158)GAG>CAG	p.E386Q	HABP4_uc010msh.2_Missense_Mutation_p.E281Q	NM_014282	NP_055097	Q5JVS0	HABP4_HUMAN	hyaluronan binding protein 4	386					platelet activation|platelet degranulation|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytosol|extracellular region|nucleus	protein binding			ovary(1)	1		Acute lymphoblastic leukemia(62;0.0169)|all_hematologic(171;0.214)				CAGGAGGGCAGAGAACTATGG	0.562000													15	54					0	0	1	0	0
LOC441455	441455	broad.mit.edu	37	9	99488772	99488772	+	RNA	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr9:99488772C>T	uc011luo.1	+	1		c.670C>T				NR_026792				Homo sapiens makorin ring finger protein 1 pseudogene, mRNA (cDNA clone IMAGE:5556543), with apparent retained intron.												0						CTGTGTGCCTCTCCATGGAGA	0.507000													23	66					0	0	1	0	0
TRIM14	9830	broad.mit.edu	37	9	100881419	100881419	+	Missense_Mutation	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr9:100881419C>T	uc004ayd.2	-	1	70	c.52G>A	c.(52-54)GAG>AAG	p.E18K	TRIM14_uc004ayf.1_5'UTR|TRIM14_uc004ayg.1_Missense_Mutation_p.E18K|TRIM14_uc004ayh.1_Missense_Mutation_p.E18K|TRIM14_uc004ayi.1_Missense_Mutation_p.E18K|TRIM14_uc004ayj.1_5'UTR	NM_033220	NP_150089	Q14142	TRI14_HUMAN	tripartite motif protein TRIM14 isoform alpha	18						cytoplasm|intracellular	zinc ion binding			central_nervous_system(1)	1		Acute lymphoblastic leukemia(62;0.0559)				CCGCATCCCTCGACAAGCTCC	0.741000													6	22					0	0	1	0	0
OR13C2	392376	broad.mit.edu	37	9	107367884	107367884	+	Missense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr9:107367884G>C	uc011lvq.1	-	1	25	c.25C>G	c.(25-27)CTG>GTG	p.L9V		NM_001004481	NP_001004481	Q8NGS9	O13C2_HUMAN	olfactory receptor, family 13, subfamily C,	9	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1						AATTCCACCAGAATGGTGTGG	0.373000													19	80					0	0	1	0	0
SLC44A1	23446	broad.mit.edu	37	9	108061569	108061569	+	Silent	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr9:108061569C>T	uc004bcn.2	+	2	326	c.105C>T	c.(103-105)TTC>TTT	p.F35F	SLC44A1_uc010mtk.1_Silent_p.F35F	NM_080546	NP_536856	Q8WWI5	CTL1_HUMAN	CDW92 antigen	35	Helical; (Potential).					integral to membrane|mitochondrial outer membrane|plasma membrane	choline transmembrane transporter activity			breast(3)|ovary(1)	4					Choline(DB00122)	TGCTGCTCTTCATCCTCTTCT	0.458000													29	106					0	0	1	0	0
RAD23B	5887	broad.mit.edu	37	9	110068673	110068673	+	Missense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr9:110068673C>G	uc004bde.2	+	4	609	c.242C>G	c.(241-243)TCC>TGC	p.S81C	RAD23B_uc011lwa.1_Missense_Mutation_p.S81C|RAD23B_uc011lwb.1_Missense_Mutation_p.S60C	NM_002874	NP_002865	P54727	RD23B_HUMAN	UV excision repair protein RAD23 homolog B	81					nucleotide-excision repair, DNA damage recognition|nucleotide-excision repair, DNA damage removal|proteasomal ubiquitin-dependent protein catabolic process|regulation of proteasomal ubiquitin-dependent protein catabolic process	cytoplasm|nucleoplasm|proteasome complex|XPC complex	damaged DNA binding|polyubiquitin binding|single-stranded DNA binding			ovary(1)	1						AAAGCAGTGTCCACACCAGCA	0.468000								Direct_reversal_of_damage|NER					5	149					0	0	1	0	0
IKBKAP	8518	broad.mit.edu	37	9	111641013	111641013	+	Missense_Mutation	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr9:111641013C>T	uc004bdm.3	-	34	4110	c.3590G>A	c.(3589-3591)CGC>CAC	p.R1197H	IKBKAP_uc004bdl.2_Missense_Mutation_p.R848H|IKBKAP_uc011lwc.1_Missense_Mutation_p.R1083H|IKBKAP_uc010mtq.2_Missense_Mutation_p.R848H|IKBKAP_uc004bdk.2_Missense_Mutation_p.R201H|IKBKAP_uc010mtp.2_RNA	NM_003640	NP_003631	O95163	ELP1_HUMAN	inhibitor of kappa light polypeptide gene	1197					immune response|protein complex assembly|regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	cytoplasm|DNA-directed RNA polymerase II, holoenzyme|nucleolus|transcription elongation factor complex	phosphorylase kinase regulator activity|protein binding|signal transducer activity			ovary(2)|skin(2)|upper_aerodigestive_tract(1)|breast(1)|kidney(1)	7						CGCTTTTCGGCGATTCTTGGA	0.363000													81	313					0	0	1	0	0
IKBKAP	8518	broad.mit.edu	37	9	111668766	111668766	+	Splice_Site	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr9:111668766C>T	uc004bdm.3	-	14	1981	c.1461_splice	c.e14-1	p.K487_splice	IKBKAP_uc004bdl.2_Splice_Site_p.K138_splice|IKBKAP_uc011lwc.1_Splice_Site_p.K373_splice|IKBKAP_uc010mtq.2_Splice_Site_p.K138_splice	NM_003640	NP_003631	O95163	ELP1_HUMAN	inhibitor of kappa light polypeptide gene						immune response|protein complex assembly|regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	cytoplasm|DNA-directed RNA polymerase II, holoenzyme|nucleolus|transcription elongation factor complex	phosphorylase kinase regulator activity|protein binding|signal transducer activity			ovary(2)|skin(2)|upper_aerodigestive_tract(1)|breast(1)|kidney(1)	7						AAACTGGATTCTATTGTAAAT	0.388000													12	53					0	0	1	0	0
SVEP1	79987	broad.mit.edu	37	9	113170526	113170526	+	Missense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr9:113170526C>G	uc010mtz.2	-	38	7691	c.7354G>C	c.(7354-7356)GAT>CAT	p.D2452H	SVEP1_uc010mty.2_Missense_Mutation_p.D378H	NM_153366	NP_699197	Q4LDE5	SVEP1_HUMAN	polydom	2452	Sushi 18.				cell adhesion	cytoplasm|extracellular region|membrane	calcium ion binding			ovary(7)	7						CCTTGCACATCAATGATTCCA	0.502000													13	54					0	0	1	0	0
SVEP1	79987	broad.mit.edu	37	9	113261352	113261352	+	Nonsense_Mutation	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr9:113261352C>T	uc010mtz.2	-	7	1987	c.1650G>A	c.(1648-1650)TGG>TGA	p.W550*	SVEP1_uc010mua.1_Nonsense_Mutation_p.W550*|SVEP1_uc004beu.2_Nonsense_Mutation_p.W550*	NM_153366	NP_699197	Q4LDE5	SVEP1_HUMAN	polydom	550	Sushi 3.				cell adhesion	cytoplasm|extracellular region|membrane	calcium ion binding			ovary(7)	7						CTCCGACATTCCATTTTCCAG	0.423000													10	35					0	0	1	0	0
KIAA0368	23392	broad.mit.edu	37	9	114172371	114172371	+	Missense_Mutation	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr9:114172371G>A	uc004bfe.1	-	24	3034	c.3034C>T	c.(3034-3036)CTT>TTT	p.L1012F		NM_001080398	NP_001073867			KIAA0368 protein												0						CTTTCTACAAGATGCAATTTG	0.423000													5	15					0	0	1	0	0
C9orf84	158401	broad.mit.edu	37	9	114454174	114454174	+	Silent	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr9:114454174C>T	uc004bfr.2	-	25	4026	c.3891G>A	c.(3889-3891)AAG>AAA	p.K1297K	C9orf84_uc011lwt.1_RNA|C9orf84_uc004bfq.2_Silent_p.K1258K|C9orf84_uc010mug.2_Silent_p.K1208K	NM_173521	NP_775792	Q5VXU9	CI084_HUMAN	hypothetical protein LOC158401 isoform 1	1297										ovary(2)	2						ATATATTTTTCTTAAAGTTCC	0.363000													4	96					0	0	1	0	0
RGS3	5998	broad.mit.edu	37	9	116346022	116346022	+	Missense_Mutation	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr9:116346022C>T	uc004bhq.2	+	21	2539	c.2330C>T	c.(2329-2331)TCA>TTA	p.S777L	RGS3_uc004bhs.2_Missense_Mutation_p.S667L|RGS3_uc004bht.2_Missense_Mutation_p.S496L|RGS3_uc010muy.2_Intron|RGS3_uc004bhv.2_Missense_Mutation_p.S98L|RGS3_uc010muz.1_Missense_Mutation_p.S116L|RGS3_uc004bhw.2_Intron|RGS3_uc011lxh.1_Missense_Mutation_p.S87L|RGS3_uc004bhx.2_Missense_Mutation_p.S98L|RGS3_uc004bhy.1_Missense_Mutation_p.S87L|RGS3_uc004bhz.2_Missense_Mutation_p.S119L	NM_144488	NP_652759	P49796	RGS3_HUMAN	regulator of G-protein signalling 3 isoform 6	777	Pro-rich.				inactivation of MAPK activity|regulation of G-protein coupled receptor protein signaling pathway	cytosol|nucleus|plasma membrane	GTPase activator activity|signal transducer activity			ovary(1)|lung(1)|skin(1)	3						CAAGACCTCTCACCCTGCCAG	0.622000													70	213					0	0	1	0	0
AKNA	80709	broad.mit.edu	37	9	117104310	117104310	+	Missense_Mutation	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr9:117104310C>T	uc004biq.3	-	19	3988	c.3853G>A	c.(3853-3855)GGT>AGT	p.G1285S	AKNA_uc004bin.3_Missense_Mutation_p.G532S|AKNA_uc004bio.3_Missense_Mutation_p.G745S|AKNA_uc004bip.3_Missense_Mutation_p.G1204S|AKNA_uc004bir.3_Missense_Mutation_p.G1285S|AKNA_uc004bis.3_Missense_Mutation_p.G1285S|AKNA_uc010mve.2_Missense_Mutation_p.G1166S	NM_030767	NP_110394	Q7Z591	AKNA_HUMAN	AT-hook transcription factor	1285					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding			ovary(4)|central_nervous_system(2)	6						GAGCCTGGACCATCTGCCTCT	0.567000													14	82					0	0	1	0	0
FBXW2	26190	broad.mit.edu	37	9	123533705	123533705	+	Missense_Mutation	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr9:123533705G>A	uc004bkl.1	-	7	1158	c.997C>T	c.(997-999)CAT>TAT	p.H333Y	FBXW2_uc011lyc.1_Missense_Mutation_p.H204Y|FBXW2_uc004bkn.2_Missense_Mutation_p.H365Y|FBXW2_uc004bkm.1_Missense_Mutation_p.H333Y|FBXW2_uc010mvj.1_Missense_Mutation_p.H268Y	NM_012164	NP_036296	Q9UKT8	FBXW2_HUMAN	F-box and WD repeat domain containing 2	333					proteolysis		protein binding|ubiquitin-protein ligase activity			urinary_tract(1)|ovary(1)|pancreas(1)|skin(1)	4						CCATCAAAATGAAGTCTTGGC	0.413000													21	53					0	0	1	0	0
CRB2	286204	broad.mit.edu	37	9	126125380	126125380	+	Missense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr9:126125380G>C	uc004bnx.1	+	2	423	c.331G>C	c.(331-333)GAG>CAG	p.E111Q	CRB2_uc004bnw.1_Missense_Mutation_p.E111Q	NM_173689	NP_775960	Q5IJ48	CRUM2_HUMAN	crumbs homolog 2 precursor	111	Extracellular (Potential).|EGF-like 2; calcium-binding (Potential).					extracellular region|integral to membrane|plasma membrane	calcium ion binding			ovary(1)	1						GGACATCGATGAGTGTGCATC	0.672000													7	22					0	0	1	0	0
RABEPK	10244	broad.mit.edu	37	9	127996087	127996087	+	Missense_Mutation	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr9:127996087C>T	uc004bpi.2	+	9	1120	c.947C>T	c.(946-948)TCT>TTT	p.S316F	RABEPK_uc004bpj.2_Missense_Mutation_p.S265F|RABEPK_uc004bpk.2_Missense_Mutation_p.S316F|RABEPK_uc004bpl.1_3'UTR|RABEPK_uc004bpm.2_Missense_Mutation_p.S316F	NM_005833	NP_005824	Q7Z6M1	RABEK_HUMAN	Rab9 effector protein with kelch motifs	316					receptor-mediated endocytosis|vesicle docking involved in exocytosis	endosome membrane|plasma membrane				ovary(1)	1						GATTCCAACTCTCTCACTCTG	0.463000													4	182					0	0	1	0	0
ENG	2022	broad.mit.edu	37	9	130605495	130605495	+	Nonsense_Mutation	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr9:130605495G>A	uc004bsj.3	-	2	510	c.97C>T	c.(97-99)CAG>TAG	p.Q33*	ENG_uc011mam.1_5'UTR|ENG_uc004bsk.3_Nonsense_Mutation_p.Q33*	NM_001114753	NP_001108225	P17813	EGLN_HUMAN	endoglin isoform 1 precursor	33	Extracellular (Potential).				artery morphogenesis|BMP signaling pathway|cell adhesion|cell chemotaxis|central nervous system vasculogenesis|chronological cell aging|detection of hypoxia|extracellular matrix disassembly|heart looping|negative regulation of endothelial cell proliferation|negative regulation of nitric-oxide synthase activity|negative regulation of pathway-restricted SMAD protein phosphorylation|negative regulation of protein autophosphorylation|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transforming growth factor beta receptor signaling pathway|patterning of blood vessels|positive regulation of BMP signaling pathway|positive regulation of pathway-restricted SMAD protein phosphorylation|positive regulation of pathway-restricted SMAD protein phosphorylation|positive regulation of systemic arterial blood pressure|positive regulation of transcription from RNA polymerase II promoter|regulation of cell adhesion|regulation of cell proliferation|regulation of transcription, DNA-dependent|regulation of transforming growth factor beta receptor signaling pathway|smooth muscle tissue development|transforming growth factor beta receptor signaling pathway|venous blood vessel morphogenesis|wound healing	cell surface|external side of plasma membrane|extracellular space|membrane fraction	activin binding|galactose binding|glycosaminoglycan binding|protein homodimerization activity|transforming growth factor beta binding|transforming growth factor beta receptor activity|transforming growth factor beta receptor, cytoplasmic mediator activity|transmembrane receptor activity|type I transforming growth factor beta receptor binding|type II transforming growth factor beta receptor binding				0						CCCACAGGCTGAAGGTCACAA	0.512000									Juvenile_Polyposis|Hereditary_Hemorrhagic_Telangiectasia				23	119					0	0	1	0	0
FAM102A	399665	broad.mit.edu	37	9	130742405	130742405	+	Missense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr9:130742405C>G	uc004bsx.1	-	1	91	c.12G>C	c.(10-12)TTG>TTC	p.L4F		NM_001035254	NP_001030331	Q5T9C2	F102A_HUMAN	early estrogen-induced gene 1 protein isoform a	4										ovary(1)	1						TCTTCTTCATCAAGAAAGCCA	0.532000													37	171					0	0	1	0	0
CIZ1	25792	broad.mit.edu	37	9	130947884	130947884	+	Missense_Mutation	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr9:130947884G>A	uc004btt.2	-	5	693	c.530C>T	c.(529-531)TCA>TTA	p.S177L	CIZ1_uc004btr.2_Missense_Mutation_p.S177L|CIZ1_uc004bts.2_Missense_Mutation_p.S153L|CIZ1_uc011maq.1_Missense_Mutation_p.S177L|CIZ1_uc004btu.2_Missense_Mutation_p.S153L|CIZ1_uc011mar.1_Missense_Mutation_p.S76L|CIZ1_uc011mas.1_Missense_Mutation_p.S207L|CIZ1_uc004btw.2_Missense_Mutation_p.S177L|CIZ1_uc004btv.2_Missense_Mutation_p.S177L|CIZ1_uc004btx.2_Missense_Mutation_p.S153L	NM_001131016	NP_001124488	Q9ULV3	CIZ1_HUMAN	CDKN1A interacting zinc finger protein 1 isoform	177						nucleus	nucleic acid binding|protein binding|zinc ion binding			ovary(2)|central_nervous_system(2)	4						GTTCCGTCCTGAAAGGTTGAA	0.453000													37	110					0	0	1	0	0
ODF2	4957	broad.mit.edu	37	9	131262372	131262372	+	Silent	SNP	G	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr9:131262372G>T	uc011mbd.1	+	21	2639	c.2328G>T	c.(2326-2328)CTG>CTT	p.L776L	ODF2_uc004bvb.2_Silent_p.L752L|ODF2_uc011mbe.1_Silent_p.L771L|ODF2_uc004bvc.2_Silent_p.L752L|ODF2_uc004bvd.3_Silent_p.L776L|ODF2_uc004bvh.2_Silent_p.L182L	NM_002540	NP_002531	Q5BJF6	ODFP2_HUMAN	outer dense fiber of sperm tails 2 isoform 1	776	Potential.				cell differentiation|G2/M transition of mitotic cell cycle|multicellular organismal development|spermatogenesis	centriole|cilium|cytosol|microtubule|spindle pole	protein binding|structural molecule activity			ovary(1)	1						AGAGCCGGCTGCAAGACCTGA	0.388000													23	89					2.89027e-11	2.987e-11	1	1	0
QRFP	347148	broad.mit.edu	37	9	133769049	133769049	+	Silent	SNP	C	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr9:133769049C>A	uc011mcb.1	-	1	177	c.177G>T	c.(175-177)CTG>CTT	p.L59L		NM_198180	NP_937823	P83859	OX26_HUMAN	RF(Arg-Phe)amide family 26 amino acid peptide	59					locomotory behavior|neuropeptide signaling pathway|positive regulation of blood pressure|regulation of feeding behavior	extracellular region	neuropeptide hormone activity|orexigenic neuropeptide QRFP receptor binding				0	all_hematologic(7;0.0028)	Myeloproliferative disorder(178;0.204)		OV - Ovarian serous cystadenocarcinoma(145;6.17e-05)|Epithelial(140;0.000267)		GTGAAGCTCTCAGCCACCGAG	0.672000													24	67					3.08376e-08	3.1617e-08	1	1	0
BAT2L1	84726	broad.mit.edu	37	9	134343102	134343102	+	Missense_Mutation	SNP	C	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr9:134343102C>A	uc004can.3	+	12	1928	c.1873C>A	c.(1873-1875)CCT>ACT	p.P625T	BAT2L1_uc010mzj.1_Missense_Mutation_p.P208T	NM_013318	NP_037450	Q5JSZ5	PRC2B_HUMAN	HLA-B associated transcript 2-like	625	Gln-rich.						protein binding				0						GAAGTCCCTTCCTCCCCGATT	0.552000													11	29					0.000673444	0.000682015	1	1	0
BARHL1	56751	broad.mit.edu	37	9	135464720	135464720	+	Missense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr9:135464720G>C	uc004cbp.1	+	3	987	c.795G>C	c.(793-795)CAG>CAC	p.Q265H		NM_020064	NP_064448	Q9BZE3	BARH1_HUMAN	BarH-like homeobox 1	265						nucleus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0				OV - Ovarian serous cystadenocarcinoma(145;1.79e-06)|Epithelial(140;3.12e-05)		TCTACCCGCAGAGTCTGGTTT	0.667000													4	145					0	0	1	0	0
GTF3C4	9329	broad.mit.edu	37	9	135546243	135546243	+	Silent	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr9:135546243C>T	uc010mzv.2	+	1	516	c.258C>T	c.(256-258)ATC>ATT	p.I86I	DDX31_uc004cbq.1_5'Flank|DDX31_uc010mzu.1_5'Flank|DDX31_uc004cbr.1_5'Flank|DDX31_uc004cbs.1_5'Flank|GTF3C4_uc010mzw.2_RNA	NM_012204	NP_036336	Q9UKN8	TF3C4_HUMAN	general transcription factor IIIC 4	86					transcription initiation from RNA polymerase III promoter	transcription factor TFIIIC complex	DNA binding|enzyme activator activity|histone acetyltransferase activity|protein binding			ovary(1)|central_nervous_system(1)	2				OV - Ovarian serous cystadenocarcinoma(145;8.15e-07)|Epithelial(140;2.6e-05)		CCCGCAGCATCGCTGTGCTGG	0.672000													8	25					0	0	1	0	0
SLC2A6	11182	broad.mit.edu	37	9	136340663	136340663	+	Silent	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr9:136340663G>C	uc004cee.2	-	5	728	c.633C>G	c.(631-633)CTC>CTG	p.L211L	SLC2A6_uc004cef.2_Silent_p.L211L|SLC2A6_uc004ceg.2_Intron|SLC2A6_uc011mdj.1_3'UTR	NM_017585	NP_060055	Q9UGQ3	GTR6_HUMAN	solute carrier family 2 (facilitated glucose	211	Helical; Name=6; (Potential).					integral to membrane|plasma membrane	D-glucose transmembrane transporter activity				0				OV - Ovarian serous cystadenocarcinoma(145;8.47e-08)|Epithelial(140;9.37e-07)|all cancers(34;1.03e-05)		GCATGAAGCTGAGCAGCAGGA	0.716000													5	17					0	0	1	0	0
PAEP	5047	broad.mit.edu	37	9	138454714	138454714	+	Silent	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr9:138454714G>A	uc004cge.1	+	3	329	c.285G>A	c.(283-285)GAG>GAA	p.E95E	PAEP_uc010naw.1_Silent_p.E73E|PAEP_uc010naz.2_RNA|PAEP_uc010nay.2_Silent_p.E95E|PAEP_uc010nba.1_Silent_p.E95E|PAEP_uc004cgd.1_Silent_p.E95E|PAEP_uc011mdp.1_Silent_p.E73E|PAEP_uc004cgg.1_Silent_p.E95E|PAEP_uc010nbc.1_Silent_p.E95E|PAEP_uc004cgf.1_Silent_p.E95E	NM_001018049	NP_001018059	P09466	PAEP_HUMAN	glycodelin precursor	95				E -> G (in Ref. 1).	multicellular organismal development	extracellular region	binding|transporter activity				0				OV - Ovarian serous cystadenocarcinoma(145;3.39e-07)|Epithelial(140;1.11e-06)|all cancers(34;2.04e-05)		AGAAGACTGAGAATCCAAAGA	0.537000													42	124					0	0	1	0	0
NOTCH1	4851	broad.mit.edu	37	9	139397773	139397773	+	Silent	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr9:139397773G>A	uc004chz.2	-	27	5028	c.5028C>T	c.(5026-5028)GTC>GTT	p.V1676V	NOTCH1_uc004cia.1_Silent_p.V906V	NM_017617	NP_060087	P46531	NOTC1_HUMAN	notch1 preproprotein	1676	Extracellular (Potential).				aortic valve morphogenesis|immune response|negative regulation of BMP signaling pathway|negative regulation of cell-substrate adhesion|negative regulation of myoblast differentiation|negative regulation of osteoblast differentiation|negative regulation of transcription, DNA-dependent|Notch receptor processing	cytosol|endoplasmic reticulum lumen|extracellular region|Golgi lumen|integral to membrane|nucleoplasm|plasma membrane	calcium ion binding|protein binding|receptor activity	p.S1675_I1676insG(3)|p.I1676_V1677>MF(2)|p.I1676>TAFL(1)|p.I1676_V1677>I(1)		haematopoietic_and_lymphoid_tissue(791)|upper_aerodigestive_tract(29)|lung(13)|central_nervous_system(10)|breast(9)|large_intestine(1)|skin(1)|oesophagus(1)|pancreas(1)	856	all_cancers(76;0.223)	Myeloproliferative disorder(178;0.0511)		OV - Ovarian serous cystadenocarcinoma(145;5.34e-06)|Epithelial(140;7.77e-06)		TCTCCAGGTAGACGATGGAGC	0.677000			T|Mis|O	TRB@	T-ALL					HNSCC(8;0.001)			18	72					0	0	1	0	0
NOTCH1	4851	broad.mit.edu	37	9	139418380	139418380	+	Silent	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr9:139418380G>A	uc004chz.2	-	3	192	c.192C>T	c.(190-192)CTC>CTT	p.L64L		NM_017617	NP_060087	P46531	NOTC1_HUMAN	notch1 preproprotein	64	Extracellular (Potential).|EGF-like 2.				aortic valve morphogenesis|immune response|negative regulation of BMP signaling pathway|negative regulation of cell-substrate adhesion|negative regulation of myoblast differentiation|negative regulation of osteoblast differentiation|negative regulation of transcription, DNA-dependent|Notch receptor processing	cytosol|endoplasmic reticulum lumen|extracellular region|Golgi lumen|integral to membrane|nucleoplasm|plasma membrane	calcium ion binding|protein binding|receptor activity			haematopoietic_and_lymphoid_tissue(791)|upper_aerodigestive_tract(29)|lung(13)|central_nervous_system(10)|breast(9)|large_intestine(1)|skin(1)|oesophagus(1)|pancreas(1)	856	all_cancers(76;0.223)	Myeloproliferative disorder(178;0.0511)		OV - Ovarian serous cystadenocarcinoma(145;5.34e-06)|Epithelial(140;7.77e-06)		AGGGGGTGCTGAGGCACGGGT	0.677000			T|Mis|O	TRB@	T-ALL					HNSCC(8;0.001)			5	8					0	0	1	0	0
C9orf139	401563	broad.mit.edu	37	9	139929366	139929366	+	Missense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr9:139929366G>C	uc004ckp.1	+	3	1947	c.433G>C	c.(433-435)GAG>CAG	p.E145Q	FUT7_uc004ckq.2_5'Flank	NM_207511	NP_997394	Q6ZV77	CI139_HUMAN	hypothetical protein LOC401563	145											0	all_cancers(76;0.0893)	Myeloproliferative disorder(178;0.0821)	STAD - Stomach adenocarcinoma(284;0.123)	OV - Ovarian serous cystadenocarcinoma(145;2.99e-05)|Epithelial(140;0.000493)		GGGAACCTGCGAGCTGGCAAA	0.612000													30	103					0	0	1	0	0
NELF	26012	broad.mit.edu	37	9	140349726	140349726	+	Silent	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr9:140349726C>T	uc004cna.2	-	6	976	c.744G>A	c.(742-744)CGG>CGA	p.R248R	C9orf167_uc011mew.1_Intron|NELF_uc011mex.1_5'Flank|NELF_uc010nci.2_Silent_p.R22R|NELF_uc011mey.1_Intron|NELF_uc011mez.1_Intron|NELF_uc004cmz.2_Silent_p.R246R|NELF_uc004cnc.2_Intron|NELF_uc004cnb.2_Silent_p.R248R	NM_001130969	NP_001124441	Q6X4W1	NELF_HUMAN	nasal embryonic LHRH factor isoform a	248						nucleus|plasma membrane					0	all_cancers(76;0.0926)			OV - Ovarian serous cystadenocarcinoma(145;0.000222)|Epithelial(140;0.000888)		TCTCCCGTTTCCGGCGCTTCC	0.657000													30	75					0	0	1	0	0
Unknown	0	broad.mit.edu	37	X	229524	229524	+	5'Flank	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chrX:229524C>G	uc004cpd.1	-						uc004cpe.1_Missense_Mutation_p.L46F|uc011mgy.1_Missense_Mutation_p.L26F	NM_012227	NP_036359			pseudoautosomal GTP-binding protein-like																		GAAGCCTGTCCAAGGCCTTCC	0.617000													4	22					0	0	1	0	0
IL3RA	3563	broad.mit.edu	37	X	1497563	1497563	+	Missense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chrX:1497563G>C	uc004cps.2	+	10	1235	c.886G>C	c.(886-888)GAG>CAG	p.E296Q	IL3RA_uc011mhd.1_Missense_Mutation_p.E218Q	NM_002183	NP_002174	P26951	IL3RA_HUMAN	interleukin 3 receptor, alpha precursor	296	Extracellular (Potential).					integral to membrane|plasma membrane	interleukin-3 receptor activity			skin(2)|lung(1)	3		all_cancers(21;4.28e-07)|all_epithelial(21;2.07e-08)|all_lung(23;2.81e-05)|Lung NSC(23;0.000693)|Lung SC(21;0.122)			Sargramostim(DB00020)	GTGCGACCAGGAGGAGGGCGC	0.667000													5	27					0	0	1	0	0
NLGN4X	57502	broad.mit.edu	37	X	5821162	5821162	+	Silent	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chrX:5821162G>A	uc010ndh.2	-	5	2058	c.1557C>T	c.(1555-1557)CTC>CTT	p.L519L	NLGN4X_uc004crp.2_Silent_p.L539L|NLGN4X_uc004crq.2_Silent_p.L519L|NLGN4X_uc010ndi.2_Silent_p.L556L|NLGN4X_uc004crr.2_Silent_p.L519L|NLGN4X_uc010ndj.2_Silent_p.L519L	NM_181332	NP_851849	Q8N0W4	NLGNX_HUMAN	X-linked neuroligin 4 precursor	519	Extracellular (Potential).				brainstem development|cell adhesion|cell-cell junction organization|cerebellum development|male courtship behavior|positive regulation of organ growth|regulation of excitatory postsynaptic membrane potential|social behavior|synapse assembly|territorial aggressive behavior|vocalization behavior	cell surface|dendrite|integral to plasma membrane|synapse	chloride ion binding|neurexin binding|protein homodimerization activity|receptor activity			skin(2)|large_intestine(1)|ovary(1)	4						CCACGGCGCTGAGCATGACGT	0.522000													30	91					0	0	1	0	0
NLGN4X	57502	broad.mit.edu	37	X	6069406	6069406	+	Missense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chrX:6069406G>C	uc010ndh.2	-	2	603	c.102C>G	c.(100-102)ATC>ATG	p.I34M	NLGN4X_uc004crp.2_Missense_Mutation_p.I34M|NLGN4X_uc004crq.2_Missense_Mutation_p.I34M|NLGN4X_uc010ndi.2_Missense_Mutation_p.I34M|NLGN4X_uc004crr.2_Missense_Mutation_p.I34M|NLGN4X_uc010ndj.2_Missense_Mutation_p.I34M	NM_181332	NP_851849	Q8N0W4	NLGNX_HUMAN	X-linked neuroligin 4 precursor	34					brainstem development|cell adhesion|cell-cell junction organization|cerebellum development|male courtship behavior|positive regulation of organ growth|regulation of excitatory postsynaptic membrane potential|social behavior|synapse assembly|territorial aggressive behavior|vocalization behavior	cell surface|dendrite|integral to plasma membrane|synapse	chloride ion binding|neurexin binding|protein homodimerization activity|receptor activity			skin(2)|large_intestine(1)|ovary(1)	4						GGGTGAACTTGATGGCAAGAG	0.498000													29	110					0	0	1	0	0
KAL1	3730	broad.mit.edu	37	X	8507779	8507779	+	Missense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chrX:8507779G>C	uc004csf.2	-	10	1525	c.1375C>G	c.(1375-1377)CAT>GAT	p.H459D		NM_000216	NP_000207	P23352	KALM_HUMAN	Kallmann syndrome 1 protein precursor	459	Fibronectin type-III 3.				axon guidance|cell adhesion|cellular component movement	extracellular space|plasma membrane|proteinaceous extracellular matrix	extracellular matrix structural constituent|heparin binding|serine-type endopeptidase inhibitor activity			ovary(3)|pancreas(1)	4						CACCGCACATGATATCGGTTG	0.478000													45	155					0	0	1	0	0
SHROOM2	357	broad.mit.edu	37	X	9841743	9841743	+	Missense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chrX:9841743G>C	uc004csu.1	+	2	307	c.217G>C	c.(217-219)GAG>CAG	p.E73Q		NM_001649	NP_001640	Q13796	SHRM2_HUMAN	apical protein of Xenopus-like	73	PDZ.				apical protein localization|brain development|cell migration|cell morphogenesis|cellular pigment accumulation|ear development|establishment of melanosome localization|eye pigment granule organization|lens morphogenesis in camera-type eye|melanosome organization	apical plasma membrane|cell-cell adherens junction|microtubule|tight junction	actin filament binding|beta-catenin binding|ligand-gated sodium channel activity			ovary(3)|skin(3)|upper_aerodigestive_tract(1)|breast(1)	8		Hepatocellular(5;0.000888)				GGCTGGAGATGAGATCGTCGG	0.517000											OREG0019659	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	18	57					0	0	1	0	0
MSL3	10943	broad.mit.edu	37	X	11790741	11790741	+	Silent	SNP	G	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chrX:11790741G>T	uc004cuw.2	+	12	1488	c.1383G>T	c.(1381-1383)GTG>GTT	p.V461V	MSL3_uc004cux.2_Silent_p.V402V|MSL3_uc011mig.1_Silent_p.V312V|MSL3_uc011mih.1_Silent_p.V449V|MSL3_uc004cuy.2_Silent_p.V295V	NM_078629	NP_523353	Q8N5Y2	MS3L1_HUMAN	male-specific lethal 3-like 1 isoform a	461					histone H4-K16 acetylation|multicellular organismal development|transcription from RNA polymerase II promoter	MSL complex	DNA binding|methylated histone residue binding|sequence-specific DNA binding transcription factor activity			ovary(1)	1						TTAATGCAGTGAAACTTCCAG	0.368000													20	83					7.45023e-12	7.70726e-12	1	1	0
ASB9	140462	broad.mit.edu	37	X	15266972	15266972	+	Silent	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chrX:15266972G>C	uc004cwl.2	-	6	901	c.654C>G	c.(652-654)CTC>CTG	p.L218L	ASB9_uc004cwk.2_Silent_p.L218L|ASB9_uc004cwm.2_Silent_p.L208L|ASB9_uc010ner.2_Silent_p.L218L|ASB9_uc004cwn.2_Silent_p.L189L	NM_001031739	NP_001026909	Q96DX5	ASB9_HUMAN	ankyrin repeat and SOCS box-containing 9 isoform	218	ANK 6.				intracellular signal transduction						0	Hepatocellular(33;0.183)					CAAAATCCATGAGCAGGCAGG	0.582000													23	125					0	0	1	0	0
PHKA2	5256	broad.mit.edu	37	X	18942509	18942509	+	Silent	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chrX:18942509G>A	uc004cyv.3	-	16	2134	c.1704C>T	c.(1702-1704)CGC>CGT	p.R568R	PHKA2_uc010nfg.1_Intron	NM_000292	NP_000283	P46019	KPB2_HUMAN	phosphorylase kinase, alpha 2 (liver)	568					glucose metabolic process|glycogen catabolic process	cytosol|phosphorylase kinase complex|plasma membrane	calmodulin binding|glucan 1,4-alpha-glucosidase activity|phosphorylase kinase activity			ovary(1)|central_nervous_system(1)	2	Hepatocellular(33;0.183)					TGAGCATGGTGCGACTGATGG	0.552000													49	227					0	0	1	0	0
GPR64	10149	broad.mit.edu	37	X	19049108	19049108	+	Missense_Mutation	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chrX:19049108C>T	uc004cyx.2	-	9	516	c.352G>A	c.(352-354)GAC>AAC	p.D118N	GPR64_uc004cyy.2_Missense_Mutation_p.D115N|GPR64_uc004cyz.2_Missense_Mutation_p.D104N|GPR64_uc004czb.2_Missense_Mutation_p.D118N|GPR64_uc004czc.2_Missense_Mutation_p.D102N|GPR64_uc004czd.2_Missense_Mutation_p.D94N|GPR64_uc004cze.2_Missense_Mutation_p.D88N|GPR64_uc004czf.2_Missense_Mutation_p.D80N|GPR64_uc004cza.2_Missense_Mutation_p.D96N|GPR64_uc004cyw.2_Missense_Mutation_p.D102N|GPR64_uc010nfj.2_Missense_Mutation_p.D88N	NM_001079858	NP_001073327	Q8IZP9	GPR64_HUMAN	G protein-coupled receptor 64 isoform 1	118	Extracellular (Potential).				neuropeptide signaling pathway|spermatogenesis	cytoplasm|integral to plasma membrane	G-protein coupled receptor activity				0	Hepatocellular(33;0.183)					TAACCTGAGTCATTGCAAATA	0.388000													80	220					0	0	1	0	0
MAP3K15	389840	broad.mit.edu	37	X	19389542	19389542	+	Nonsense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chrX:19389542G>C	uc004czk.1	-	24	3277	c.1640C>G	c.(1639-1641)TCA>TGA	p.S547*	MAP3K15_uc004czj.1_Nonsense_Mutation_p.S507*|MAP3K15_uc004czi.1_Nonsense_Mutation_p.S6*	NM_001001671	NP_001001671	Q6ZN16	M3K15_HUMAN	mitogen-activated protein kinase kinase kinase	1072							ATP binding|MAP kinase kinase kinase activity|metal ion binding			ovary(3)|lung(2)|stomach(1)|skin(1)	7	Hepatocellular(33;0.183)					CTTGAGCTTTGATATTGTGGT	0.527000													4	225					0	0	1	0	0
MAP7D2	256714	broad.mit.edu	37	X	20071091	20071091	+	Nonsense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chrX:20071091G>C	uc004czr.1	-	5	519	c.500C>G	c.(499-501)TCA>TGA	p.S167*	MAP7D2_uc004czq.1_Nonsense_Mutation_p.S60*|MAP7D2_uc011mji.1_Nonsense_Mutation_p.S123*|MAP7D2_uc010nfo.1_Nonsense_Mutation_p.S167*|MAP7D2_uc011mjj.1_Intron|MAP7D2_uc004czs.1_Nonsense_Mutation_p.S156*	NM_152780	NP_689993	Q96T17	MA7D2_HUMAN	MAP7 domain containing 2	167										ovary(2)|breast(1)	3						AGTTGATGTTGAAAGTTTGTC	0.453000													5	160					0	0	1	0	0
PHEX	5251	broad.mit.edu	37	X	22051181	22051181	+	Nonsense_Mutation	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chrX:22051181C>T	uc004dah.2	+	1	261	c.58C>T	c.(58-60)CGA>TGA	p.R20*	PHEX_uc011mjr.1_Nonsense_Mutation_p.R20*	NM_000444	NP_000435	P78562	PHEX_HUMAN	phosphate-regulating neutral endopeptidase	20	Cytoplasmic (Potential).				biomineral tissue development|cell-cell signaling|protein modification process|proteolysis|skeletal system development	integral to plasma membrane	aminopeptidase activity|metalloendopeptidase activity|zinc ion binding			ovary(2)|lung(1)	3						CAGAGGCACTCGAATTGCCCT	0.557000													53	160					0	0	1	0	0
PHEX	5251	broad.mit.edu	37	X	22196456	22196456	+	Missense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chrX:22196456G>C	uc004dah.2	+	14	1752	c.1549G>C	c.(1549-1551)GAT>CAT	p.D517H	PHEX_uc011mjr.1_Missense_Mutation_p.D517H|PHEX_uc011mjs.1_Missense_Mutation_p.D420H	NM_000444	NP_000435	P78562	PHEX_HUMAN	phosphate-regulating neutral endopeptidase	517	Extracellular (Potential).				biomineral tissue development|cell-cell signaling|protein modification process|proteolysis|skeletal system development	integral to plasma membrane	aminopeptidase activity|metalloendopeptidase activity|zinc ion binding			ovary(2)|lung(1)	3						AGCACAGTCTGATTTCTTCTG	0.358000													7	106					0	0	1	0	0
ZFX	7543	broad.mit.edu	37	X	24225851	24225851	+	Silent	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chrX:24225851G>A	uc004dbf.2	+	6	1077	c.819G>A	c.(817-819)GAG>GAA	p.E273E	ZFX_uc004dbd.1_Silent_p.E273E|ZFX_uc010nfx.1_Silent_p.E44E|ZFX_uc004dbe.2_Silent_p.E273E|ZFX_uc011mjv.1_Silent_p.E312E|ZFX_uc010nfy.1_Intron|ZFX_uc010nfz.2_5'UTR	NM_003410	NP_003401	P17010	ZFX_HUMAN	zinc finger protein, X-linked	273					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|transcription coactivator activity|zinc ion binding			ovary(2)	2						ACATTGTGGAGAGTGAGCCTG	0.378000													4	179					0	0	1	0	0
FAM48B2	170067	broad.mit.edu	37	X	24329246	24329246	+	Silent	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chrX:24329246C>T	uc011mjw.1	-	1	2187	c.2187G>A	c.(2185-2187)TTG>TTA	p.L729L		NM_001136233	NP_001129705	P0C7V6	F48B2_HUMAN	family with sequence similarity 48, member B2	729	Gln-rich.										0						CAAGCAGACTCAACACAGCAG	0.617000													3	23					0	0	1	0	0
Unknown	0	broad.mit.edu	37	X	26179932	26179932	+	IGR	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chrX:26179932G>A								MAGEB18 (21080 upstream) : MAGEB6 (30625 downstream)																							CATTGAGACTGAGAGCTTAAG	0.502000													38	133					0	0	1	0	0
RPGR	6103	broad.mit.edu	37	X	38146396	38146396	+	Missense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chrX:38146396C>G	uc004ded.1	-	15	2024	c.1856G>C	c.(1855-1857)AGA>ACA	p.R619T	RPGR_uc004deb.2_Missense_Mutation_p.R619T|RPGR_uc004dea.2_RNA|RPGR_uc004dec.2_Intron	NM_001034853	NP_001030025	Q92834	RPGR_HUMAN	retinitis pigmentosa GTPase regulator isoform C	619	Glu-rich.				intracellular protein transport|response to stimulus|visual perception	Golgi apparatus|photoreceptor outer segment	guanyl-nucleotide exchange factor activity|protein binding			ovary(1)	1						Tttctcctttcttcctccatg	0.239000													3	172					0	0	1	0	0
BCOR	54880	broad.mit.edu	37	X	39932327	39932327	+	Missense_Mutation	SNP	G	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chrX:39932327G>T	uc004den.3	-	4	2564	c.2272C>A	c.(2272-2274)CCA>ACA	p.P758T	BCOR_uc004dep.3_Missense_Mutation_p.P758T|BCOR_uc004deo.3_Missense_Mutation_p.P758T|BCOR_uc004dem.3_Missense_Mutation_p.P758T|BCOR_uc004deq.3_Missense_Mutation_p.P758T	NM_001123385	NP_001116857	Q6W2J9	BCOR_HUMAN	BCL-6 interacting corepressor isoform c	758					heart development|histone H2A monoubiquitination|negative regulation of bone mineralization|negative regulation of histone H3-K36 methylation|negative regulation of histone H3-K4 methylation|negative regulation of tooth mineralization|negative regulation of transcription from RNA polymerase II promoter|odontogenesis|palate development|specification of axis polarity|transcription, DNA-dependent	nucleus	heat shock protein binding|histone deacetylase binding|transcription corepressor activity|transcription factor binding|transcription regulatory region DNA binding			ovary(2)|kidney(1)|central_nervous_system(1)	4						CGGAGGGTTGGGTCCTCGTAA	0.522000													65	229					1.53582e-20	1.60486e-20	1	1	0
MAOA	4128	broad.mit.edu	37	X	43515648	43515648	+	Missense_Mutation	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chrX:43515648G>A	uc004dfy.2	+	1	240	c.59G>A	c.(58-60)GGA>GAA	p.G20E	MAOA_uc011mkw.1_5'UTR	NM_000240	NP_000231	P21397	AOFA_HUMAN	monoamine oxidase A	20	Cytoplasmic.				behavior|neurotransmitter biosynthetic process|neurotransmitter catabolic process|neurotransmitter secretion|xenobiotic metabolic process	integral to membrane|mitochondrial outer membrane	primary amine oxidase activity|protein binding			breast(2)|ovary(1)	3					Almotriptan(DB00918)|Carbidopa(DB00190)|Clonazepam(DB01068)|Dopamine(DB00988)|Fluvoxamine(DB00176)|Ginkgo biloba(DB01381)|Imipramine(DB00458)|Isocarboxazid(DB01247)|Levodopa(DB01235)|Linezolid(DB00601)|Lorazepam(DB00186)|Moclobemide(DB01171)|Nicotine(DB00184)|Norepinephrine(DB00368)|Phenelzine(DB00780)|Phenmetrazine(DB00830)|Phentermine(DB00191)|Phenylephrine(DB00388)|Phenylpropanolamine(DB00397)|Pseudoephedrine(DB00852)|Rasagiline(DB01367)|Riboflavin(DB00140)|Rizatriptan(DB00953)|Selegiline(DB01037)|Sumatriptan(DB00669)|Testosterone(DB00624)|Tranylcypromine(DB00752)|Zolmitriptan(DB00315)	GTCGTGATCGGAGGTGGCATT	0.602000													19	67					0	0	1	0	0
SLC9A7	84679	broad.mit.edu	37	X	46522066	46522066	+	Missense_Mutation	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chrX:46522066G>A	uc004dgu.1	-	6	814	c.806C>T	c.(805-807)GCG>GTG	p.A269V	SLC9A7_uc004dgv.1_Missense_Mutation_p.A269V	NM_032591	NP_115980	Q96T83	SL9A7_HUMAN	solute carrier family 9, member 7	269	Helical; (Potential).				regulation of pH	Golgi membrane|integral to membrane|recycling endosome membrane|trans-Golgi network	potassium:hydrogen antiporter activity|protein homodimerization activity|sodium:hydrogen antiporter activity			ovary(2)	2						ATTAAATATCGCCAGCACAGT	0.398000													9	47					0	0	1	0	0
RBM10	8241	broad.mit.edu	37	X	47034434	47034434	+	Silent	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chrX:47034434C>T	uc004dhf.2	+	6	898	c.519C>T	c.(517-519)TTC>TTT	p.F173F	RBM10_uc004dhe.1_Intron|RBM10_uc004dhg.2_Silent_p.F96F|RBM10_uc004dhh.2_Silent_p.F173F|RBM10_uc010nhq.2_Silent_p.F96F|RBM10_uc004dhi.2_Silent_p.F238F	NM_005676	NP_005667	P98175	RBM10_HUMAN	RNA binding motif protein 10 isoform 1	173	RRM 1.				mRNA processing|RNA splicing	chromatin remodeling complex	nucleotide binding|RNA binding|zinc ion binding			ovary(1)|large_intestine(1)|prostate(1)|breast(1)|pancreas(1)	5						GCCGGGGCTTCGCCTTCGTCG	0.562000													27	90					0	0	1	0	0
UBA1	7317	broad.mit.edu	37	X	47071825	47071825	+	Missense_Mutation	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chrX:47071825G>A	uc004dhj.3	+	21	2618	c.2467G>A	c.(2467-2469)GAC>AAC	p.D823N	UBA1_uc004dhk.3_Missense_Mutation_p.D823N|UBA1_uc004dhm.2_Missense_Mutation_p.D271N	NM_153280	NP_695012	P22314	UBA1_HUMAN	ubiquitin-activating enzyme E1	823					cell death|protein modification process		ATP binding|ligase activity|protein binding|small protein activating enzyme activity			ovary(1)	1						TCATGCAGATGACAGTCGTCT	0.527000													4	34					0	0	1	0	0
USP11	8237	broad.mit.edu	37	X	47106541	47106541	+	Missense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chrX:47106541C>G	uc004dhp.2	+	18	2470	c.2470C>G	c.(2470-2472)CTC>GTC	p.L824V	USP11_uc004dhq.2_Missense_Mutation_p.L550V	NM_004651	NP_004642	P51784	UBP11_HUMAN	ubiquitin specific peptidase 11	824					protein deubiquitination|ubiquitin-dependent protein catabolic process	cytoplasm|nucleus	cysteine-type endopeptidase activity|protein binding|ubiquitin thiolesterase activity|ubiquitin-specific protease activity			ovary(1)|lung(1)|central_nervous_system(1)	3						GCCGGAGATTCTCATCATCCA	0.567000													21	62					0	0	1	0	0
ZNF41	7592	broad.mit.edu	37	X	47307881	47307881	+	Missense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chrX:47307881G>C	uc004dhs.3	-	4	1481	c.1414C>G	c.(1414-1416)CAG>GAG	p.Q472E	ZNF41_uc004dhu.3_Missense_Mutation_p.Q464E|ZNF41_uc004dht.3_Missense_Mutation_p.Q344E|ZNF41_uc004dhv.3_Missense_Mutation_p.Q440E|ZNF41_uc004dhw.3_Missense_Mutation_p.Q432E|ZNF41_uc004dhy.3_Missense_Mutation_p.Q430E|ZNF41_uc004dhx.3_Missense_Mutation_p.Q430E|ZNF41_uc011mlm.1_Missense_Mutation_p.Q344E	NM_153380	NP_700359	P51814	ZNF41_HUMAN	zinc finger protein 41	472	C2H2-type 6.					nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(3)	3		all_lung(315;0.000129)				TGGATTCTCTGATGCATCCTG	0.433000													55	201					0	0	1	0	0
SYN1	6853	broad.mit.edu	37	X	47435781	47435781	+	Nonsense_Mutation	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chrX:47435781C>T	uc004die.2	-	8	1134	c.1005G>A	c.(1003-1005)TGG>TGA	p.W335*	SYN1_uc004did.2_Nonsense_Mutation_p.W335*	NM_006950	NP_008881	P17600	SYN1_HUMAN	synapsin I isoform Ia	335	C; actin-binding and synaptic-vesicle binding.					cell junction|Golgi apparatus	actin binding|ATP binding|ligase activity|transporter activity			ovary(1)	1						TATTGGTCTTCCAGTTCCCTG	0.617000													14	47					0	0	1	0	0
PORCN	64840	broad.mit.edu	37	X	48371091	48371091	+	Missense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chrX:48371091G>C	uc010nie.1	+	6	828	c.670G>C	c.(670-672)GAC>CAC	p.D224H	PORCN_uc004djr.1_Missense_Mutation_p.D224H|PORCN_uc004djs.1_Missense_Mutation_p.D224H|PORCN_uc004djt.1_Missense_Mutation_p.D153H|PORCN_uc011mlx.1_Missense_Mutation_p.D153H|PORCN_uc004dju.1_Missense_Mutation_p.D93H|PORCN_uc004djv.1_Missense_Mutation_p.D224H|PORCN_uc004djw.1_Missense_Mutation_p.D224H	NM_203475	NP_982301	Q9H237	PORCN_HUMAN	porcupine isoform D	224	Extracellular (Potential).				Wnt receptor signaling pathway	endoplasmic reticulum membrane|integral to membrane	acyltransferase activity			ovary(2)|central_nervous_system(1)	3						CCTCAACGGTGACCGCCTCCT	0.647000													17	56					0	0	1	0	0
GATA1	2623	broad.mit.edu	37	X	48650370	48650370	+	Missense_Mutation	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chrX:48650370G>A	uc004dkq.3	+	3	431	c.340G>A	c.(340-342)GAG>AAG	p.E114K		NM_002049	NP_002040	P15976	GATA1_HUMAN	GATA binding protein 1	114					basophil differentiation|eosinophil differentiation|erythrocyte development|megakaryocyte differentiation|platelet aggregation|platelet formation|positive regulation of anti-apoptosis|positive regulation of peptidyl-tyrosine phosphorylation|regulation of glycoprotein biosynthetic process|transcription from RNA polymerase II promoter	nuclear membrane|nucleolus|nucleoplasm	C2H2 zinc finger domain binding|RNA polymerase II regulatory region sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding	p.?(2)|p.V74_C199del(1)|p.V77_A120>A(1)		haematopoietic_and_lymphoid_tissue(246)|lung(2)	248						TCCCACCCGCGAGGACTCTCC	0.622000			Mis|F		megakaryoblastic leukemia of Downs Syndrome								22	74					0	0	1	0	0
CCNB3	85417	broad.mit.edu	37	X	50052681	50052681	+	Missense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chrX:50052681G>C	uc004dox.3	+	6	1810	c.1512G>C	c.(1510-1512)TTG>TTC	p.L504F	CCNB3_uc004doy.2_Missense_Mutation_p.L504F|CCNB3_uc004doz.2_Intron|CCNB3_uc010njq.2_Intron	NM_033031	NP_149020	Q8WWL7	CCNB3_HUMAN	cyclin B3 isoform 3	504					cell division|meiosis|regulation of cyclin-dependent protein kinase activity|regulation of G2/M transition of mitotic cell cycle	nucleus	protein kinase binding			ovary(4)|lung(3)|large_intestine(1)|pancreas(1)	9	Ovarian(276;0.236)					TGTCCCACTTGAAGAAACCAC	0.413000													13	59					0	0	1	0	0
DGKK	139189	broad.mit.edu	37	X	50213605	50213605	+	Missense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chrX:50213605C>G	uc010njr.1	-	1	133	c.73G>C	c.(73-75)GAG>CAG	p.E25Q		NM_001013742	NP_001013764	Q5KSL6	DGKK_HUMAN	diacylglycerol kinase kappa	25					activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|diacylglycerol metabolic process|intracellular signal transduction|platelet activation|response to oxidative stress	cytoplasm|plasma membrane	ATP binding|diacylglycerol kinase activity|metal ion binding			ovary(1)|kidney(1)	2	Ovarian(276;0.236)					ggcggaggcTCTGGAGACTCA	0.473000													3	17					0	0	1	0	0
GSPT2	23708	broad.mit.edu	37	X	51488004	51488004	+	Missense_Mutation	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chrX:51488004G>A	uc004dpl.2	+	1	1508	c.1282G>A	c.(1282-1284)GAT>AAT	p.D428N		NM_018094	NP_060564	Q8IYD1	ERF3B_HUMAN	peptide chain release factor 3	428					cell cycle|nuclear-transcribed mRNA catabolic process, nonsense-mediated decay|translational termination	cytoplasm	GTP binding|GTPase activity|protein binding			ovary(1)	1	Ovarian(276;0.236)					CAGATCAATTGATGGACCAAT	0.428000													6	116					0	0	1	0	0
SMC1A	8243	broad.mit.edu	37	X	53407550	53407550	+	Silent	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chrX:53407550G>C	uc004dsg.2	-	24	3678	c.3609C>G	c.(3607-3609)GTC>GTG	p.V1203V	SMC1A_uc011moe.1_Silent_p.V1181V	NM_006306	NP_006297	Q14683	SMC1A_HUMAN	structural maintenance of chromosomes 1A	1203					cell cycle checkpoint|cell division|DNA repair|meiosis|mitotic metaphase/anaphase transition|mitotic prometaphase|mitotic sister chromatid cohesion|mitotic spindle organization|negative regulation of DNA endoreduplication|nuclear mRNA splicing, via spliceosome|response to radiation|signal transduction in response to DNA damage	cohesin core heterodimer|condensed chromosome kinetochore|condensed nuclear chromosome|cytoplasm|meiotic cohesin complex|nucleoplasm	ATP binding|chromatin binding|microtubule motor activity|protein heterodimerization activity			ovary(5)|central_nervous_system(1)	6						CCTCAGGATAGACTCCAATGA	0.567000													7	24					0	0	1	0	0
YIPF6	286451	broad.mit.edu	37	X	67751726	67751726	+	Missense_Mutation	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chrX:67751726C>T	uc004dwy.2	+	7	619	c.596C>T	c.(595-597)TCC>TTC	p.S199F	YIPF6_uc011mph.1_Missense_Mutation_p.S156F|uc004dwz.2_5'Flank	NM_173834	NP_776195	Q96EC8	YIPF6_HUMAN	Yip1 domain family, member 6	199	Helical; (Potential).					endoplasmic reticulum|integral to membrane					0						tgtttAGCCTCCACAGCTTTC	0.358000													4	20					0	0	1	0	0
P2RY4	5030	broad.mit.edu	37	X	69479359	69479359	+	Missense_Mutation	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chrX:69479359G>A	uc004dxz.1	-	1	296	c.116C>T	c.(115-117)CCT>CTT	p.P39L		NM_002565	NP_002556	P51582	P2RY4_HUMAN	pyrimidinergic receptor P2Y4	39	Helical; Name=1; (Potential).				activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger|elevation of cytosolic calcium ion concentration	integral to plasma membrane	purinergic nucleotide receptor activity, G-protein coupled			lung(1)	1						ATAGCTCACAGGCAGCAGGAT	0.577000													10	23					0	0	1	0	0
GDPD2	54857	broad.mit.edu	37	X	69652906	69652906	+	Silent	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chrX:69652906G>A	uc004dyh.2	+	16	1841	c.1590G>A	c.(1588-1590)CTG>CTA	p.L530L	GDPD2_uc011mpk.1_Silent_p.L581L|GDPD2_uc011mpl.1_Silent_p.L451L|GDPD2_uc011mpm.1_Silent_p.L451L	NM_017711	NP_060181	Q9HCC8	GDPD2_HUMAN	osteoblast differentiation promoting factor	530	Cytoplasmic (Potential).				glycerol metabolic process|lipid metabolic process	cytoplasm|cytoskeleton|integral to membrane|plasma membrane	glycerophosphodiester phosphodiesterase activity|glycerophosphoinositol inositolphosphodiesterase activity|metal ion binding			ovary(2)	2	Renal(35;0.156)					CAGTGCTGCTGACAAGGATCA	0.537000											OREG0019852	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	5	20					0	0	1	0	0
TAF1	6872	broad.mit.edu	37	X	70608641	70608641	+	Missense_Mutation	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chrX:70608641G>A	uc004dzu.3	+	17	2671	c.2620G>A	c.(2620-2622)GAA>AAA	p.E874K	BCYRN1_uc011mpt.1_Intron|TAF1_uc004dzt.3_Missense_Mutation_p.E895K|TAF1_uc004dzv.3_Missense_Mutation_p.E48K	NM_138923	NP_620278	P21675	TAF1_HUMAN	TBP-associated factor 1 isoform 2	874					G1 phase of mitotic cell cycle|interspecies interaction between organisms|peptidyl-serine phosphorylation|peptidyl-threonine phosphorylation|positive regulation of proteasomal ubiquitin-dependent protein catabolic process|positive regulation of transcription from RNA polymerase II promoter|positive regulation of transcription initiation from RNA polymerase II promoter|protein autophosphorylation|regulation of transcription involved in G2/M-phase of mitotic cell cycle|RNA polymerase II transcriptional preinitiation complex assembly|transcription elongation from RNA polymerase II promoter|viral reproduction	MLL1 complex|transcription factor TFIID complex	ATP binding|histone acetyl-lysine binding|histone acetyltransferase activity|p53 binding|protein binding|protein serine/threonine kinase activity|sequence-specific DNA binding|TBP-class protein binding|transcription coactivator activity			ovary(7)|breast(4)|large_intestine(2)|central_nervous_system(2)|lung(1)|skin(1)	17	Renal(35;0.156)	all_lung(315;0.000321)				ACCAACGGAAGAAGAGATCAG	0.438000													5	188					0	0	1	0	0
RGAG4	340526	broad.mit.edu	37	X	71350638	71350638	+	Silent	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chrX:71350638G>C	uc010nlh.1	-	1	1114	c.753C>G	c.(751-753)CTC>CTG	p.L251L	NHSL2_uc011mqa.1_Intron|RGAG4_uc004eaj.1_RNA|NHSL2_uc004eak.1_5'Flank	NM_001024455	NP_001019626	Q5HYW3	RGAG4_HUMAN	retrotransposon gag domain containing 4	251										ovary(2)|skin(1)	3	Renal(35;0.156)					CATAGCTGCCGAGGGTACAGT	0.542000													3	89					0	0	1	0	0
ERCC6L	54821	broad.mit.edu	37	X	71426886	71426886	+	Missense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chrX:71426886C>G	uc004eaq.1	-	2	1828	c.1731G>C	c.(1729-1731)GAG>GAC	p.E577D	PIN4_uc004eao.1_Intron|ERCC6L_uc004eap.1_Missense_Mutation_p.E454D	NM_017669	NP_060139	Q2NKX8	ERC6L_HUMAN	excision repair protein ERCC6-like	577	Helicase C-terminal.				cell division|mitotic prometaphase	condensed chromosome kinetochore|cytosol	ATP binding|DNA binding|helicase activity|protein binding			ovary(3)	3	Renal(35;0.156)					CCACAACATTCTCTTTTTGTC	0.398000													37	110					0	0	1	0	0
TSIX	9383	broad.mit.edu	37	X	73043756	73043756	+	RNA	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chrX:73043756G>A	uc004ebn.2	+	1		c.31717G>A			XIST_uc004ebm.1_RNA	NR_003255				Homo sapiens XIST antisense RNA (non-protein coding) (TSIX), non-coding RNA.												0						GAGCCCCACAGAAAGTAATCA	0.368000													11	42					0	0	1	0	0
KIAA2022	340533	broad.mit.edu	37	X	73959275	73959275	+	Missense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chrX:73959275C>G	uc004eby.2	-	4	5133	c.4516G>C	c.(4516-4518)GAA>CAA	p.E1506Q		NM_001008537	NP_001008537	Q5QGS0	K2022_HUMAN	hypothetical protein LOC340533	1506					base-excision repair, gap-filling|DNA replication proofreading|DNA replication, removal of RNA primer|nucleotide-excision repair, DNA gap filling|regulation of mitotic cell cycle|S phase of mitotic cell cycle	delta DNA polymerase complex	3'-5'-exodeoxyribonuclease activity|DNA-directed DNA polymerase activity			ovary(7)|large_intestine(4)|skin(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)	15						GTCTCTTCTTCAAACACAGGT	0.343000													7	34					0	0	1	0	0
ATRX	546	broad.mit.edu	37	X	76829717	76829717	+	Silent	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chrX:76829717C>T	uc004ecp.3	-	28	6556	c.6324G>A	c.(6322-6324)GTG>GTA	p.V2108V	ATRX_uc004ecq.3_Silent_p.V2070V|ATRX_uc004eco.3_Silent_p.V1893V	NM_000489	NP_000480	P46100	ATRX_HUMAN	transcriptional regulator ATRX isoform 1	2108	Helicase C-terminal.				DNA methylation|DNA recombination|DNA repair|regulation of transcription, DNA-dependent	nuclear heterochromatin	ATP binding|chromo shadow domain binding|DNA binding|DNA helicase activity|zinc ion binding			haematopoietic_and_lymphoid_tissue(14)|pancreas(12)|lung(1)|breast(1)|skin(1)|kidney(1)	30					Phosphatidylserine(DB00144)	TTTCCTACCTCACATTAGTTT	0.294000			Mis|F|N		Pancreatic neuroendocrine tumors		ATR-X (alpha thalassemia/mental retardation) syndrome						5	171					0	0	1	0	0
ZCCHC5	203430	broad.mit.edu	37	X	77913090	77913090	+	Silent	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chrX:77913090C>T	uc004edc.1	-	2	1124	c.828G>A	c.(826-828)GTG>GTA	p.V276V		NM_152694	NP_689907	Q8N8U3	ZCHC5_HUMAN	zinc finger, CCHC domain containing 5	276							nucleic acid binding|zinc ion binding			ovary(1)	1						CAACAAAGCTCACCAGGGCTG	0.498000													4	18					0	0	1	0	0
DACH2	117154	broad.mit.edu	37	X	85403921	85403921	+	Silent	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chrX:85403921C>G	uc004eew.2	+	1	467	c.297C>G	c.(295-297)CTC>CTG	p.L99L	DACH2_uc004eex.2_Silent_p.L99L|DACH2_uc010nmq.2_5'UTR	NM_053281	NP_444511	Q96NX9	DACH2_HUMAN	dachshund 2 isoform a	99	DACHbox-N.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|nucleotide binding			ovary(4)|pancreas(1)	5						ATCTTTTTCTCAAGCACCTGG	0.562000													4	137					0	0	1	0	0
GPRASP1	9737	broad.mit.edu	37	X	101909941	101909941	+	Nonsense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chrX:101909941C>G	uc004ejj.3	+	5	1901	c.1100C>G	c.(1099-1101)TCA>TGA	p.S367*	GPRASP1_uc004eji.3_Nonsense_Mutation_p.S367*|GPRASP1_uc010nod.2_Nonsense_Mutation_p.S367*	NM_014710	NP_055525	Q5JY77	GASP1_HUMAN	G protein-coupled receptor associated sorting	367						cytoplasm	protein binding			ovary(1)|lung(1)	2						AATACCTTTTCAAGGCCCATG	0.488000													44	123					0	0	1	0	0
BHLHB9	80823	broad.mit.edu	37	X	102004761	102004761	+	Missense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chrX:102004761G>C	uc010nog.2	+	4	1409	c.838G>C	c.(838-840)GAG>CAG	p.E280Q	BHLHB9_uc011mrq.1_Missense_Mutation_p.E280Q|BHLHB9_uc011mrr.1_Missense_Mutation_p.E280Q|BHLHB9_uc011mrs.1_Missense_Mutation_p.E280Q|BHLHB9_uc011mrt.1_Missense_Mutation_p.E280Q|BHLHB9_uc004ejo.2_Missense_Mutation_p.E280Q|BHLHB9_uc011mru.1_Missense_Mutation_p.E280Q|BHLHB9_uc011mrv.1_Missense_Mutation_p.E280Q	NM_001142526	NP_001135998	Q6PI77	BHLH9_HUMAN	basic helix-loop-helix domain containing, class	280						cytoplasm|nucleus	binding			ovary(2)	2						GCCTATCCCTGAGTGTCGTTT	0.493000													4	180					0	0	1	0	0
TEX13A	56157	broad.mit.edu	37	X	104463712	104463712	+	Silent	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chrX:104463712C>T	uc004ema.2	-	5	1276	c.1164G>A	c.(1162-1164)GTG>GTA	p.V388V	IL1RAPL2_uc004elz.1_Intron|TEX13A_uc004emb.2_3'UTR	NM_031274	NP_112564	Q9BXU3	TX13A_HUMAN	testis expressed sequence 13A	388	RanBP2-type.					intracellular	zinc ion binding			ovary(2)	2						GTGAAAAATTCACAGCGTTAC	0.498000													9	294					0	0	1	0	0
Unknown	0	broad.mit.edu	37	X	106844953	106844953	+	IGR	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chrX:106844953G>C								CXorf41 (357481 upstream) : PRPS1 (26701 downstream)																							CAACCCGCCAGAAGAAGGAGA	0.557000													14	103					0	0	1	0	0
TMEM164	84187	broad.mit.edu	37	X	109247278	109247278	+	Missense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chrX:109247278G>C	uc004eom.2	+	2	595	c.276G>C	c.(274-276)AAG>AAC	p.K92N	TMEM164_uc004eol.2_Intron|TMEM164_uc010npq.2_Missense_Mutation_p.K92N	NM_032227	NP_115603	Q5U3C3	TM164_HUMAN	transmembrane protein 164 isoform b	92						integral to membrane				large_intestine(1)|lung(1)|skin(1)	3						GCCTGAGCAAGAATCTGCTCT	0.607000													28	89					0	0	1	0	0
RGAG1	57529	broad.mit.edu	37	X	109695460	109695460	+	Missense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chrX:109695460C>G	uc004eor.1	+	3	1861	c.1615C>G	c.(1615-1617)CTG>GTG	p.L539V	RGAG1_uc011msr.1_Missense_Mutation_p.L539V	NM_020769	NP_065820	Q8NET4	RGAG1_HUMAN	retrotransposon gag domain containing 1	539										lung(2)|upper_aerodigestive_tract(1)|ovary(1)	4						AATGTCCATGCTGCAAATGAG	0.498000													82	217					0	0	1	0	0
CAPN6	827	broad.mit.edu	37	X	110497608	110497608	+	Silent	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chrX:110497608C>T	uc004epc.1	-	3	357	c.189G>A	c.(187-189)CTG>CTA	p.L63L	CAPN6_uc011msu.1_5'UTR	NM_014289	NP_055104	Q9Y6Q1	CAN6_HUMAN	calpain 6	63	Calpain catalytic.				microtubule bundle formation|proteolysis|regulation of cytoskeleton organization	perinuclear region of cytoplasm|spindle microtubule	calcium-dependent cysteine-type endopeptidase activity|microtubule binding			ovary(2)|upper_aerodigestive_tract(1)|large_intestine(1)|lung(1)|skin(1)	6						TGCCCACAATCAGATGGGGGT	0.468000													44	163					0	0	1	0	0
KLHL13	90293	broad.mit.edu	37	X	117053561	117053561	+	Missense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chrX:117053561G>C	uc004eql.2	-	4	555	c.493C>G	c.(493-495)CAA>GAA	p.Q165E	KLHL13_uc004eqk.2_Missense_Mutation_p.Q114E|KLHL13_uc011mtn.1_Missense_Mutation_p.Q5E|KLHL13_uc011mto.1_Missense_Mutation_p.Q159E|KLHL13_uc011mtp.1_Missense_Mutation_p.Q167E|KLHL13_uc004eqm.2_Missense_Mutation_p.Q114E|KLHL13_uc011mtq.1_Missense_Mutation_p.Q149E	NM_033495	NP_277030	Q9P2N7	KLH13_HUMAN	kelch-like 13	165					cytokinesis|mitosis|protein ubiquitination	Cul3-RING ubiquitin ligase complex				kidney(1)|skin(1)	2						AGCGTGTCTTGAAGGTTGTCC	0.363000													47	151					0	0	1	0	0
LONRF3	79836	broad.mit.edu	37	X	118143099	118143099	+	Nonsense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chrX:118143099C>G	uc004eqw.2	+	7	1572	c.1541C>G	c.(1540-1542)TCA>TGA	p.S514*	LONRF3_uc004eqx.2_Nonsense_Mutation_p.S473*|LONRF3_uc004eqy.2_RNA|LONRF3_uc004eqz.2_Nonsense_Mutation_p.S258*	NM_001031855	NP_001027026	Q496Y0	LONF3_HUMAN	LON peptidase N-terminal domain and ring finger	514					proteolysis		ATP-dependent peptidase activity|protein binding|zinc ion binding			breast(1)|central_nervous_system(1)	2						TGCTTGGCATCAAGAAAATAC	0.383000													20	99					0	0	1	0	0
CXorf56	63932	broad.mit.edu	37	X	118676555	118676555	+	Silent	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chrX:118676555C>T	uc004erk.1	-	5	472	c.426G>A	c.(424-426)GTG>GTA	p.V142V	CXorf56_uc004erj.1_Silent_p.V93V|CXorf56_uc011mtu.1_Silent_p.V128V	NM_022101	NP_071384	Q9H5V9	CX056_HUMAN	hypothetical protein LOC63932	142							protein binding				0						TGGTCATCATCACCTGGAGTG	0.527000													36	112					0	0	1	0	0
ODZ1	10178	broad.mit.edu	37	X	123538975	123538975	+	Missense_Mutation	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chrX:123538975G>A	uc004euj.2	-	26	5340	c.5276C>T	c.(5275-5277)TCA>TTA	p.S1759L	ODZ1_uc011muj.1_Missense_Mutation_p.S1765L|ODZ1_uc010nqy.2_Missense_Mutation_p.S1766L	NM_014253	NP_055068	Q9UKZ4	TEN1_HUMAN	odz, odd Oz/ten-m homolog 1 isoform 3	1759	Extracellular (Potential).				immune response|negative regulation of cell proliferation|nervous system development|signal transduction	extracellular region	heparin binding			ovary(11)|breast(4)|large_intestine(2)|skin(2)|pancreas(2)|upper_aerodigestive_tract(1)|lung(1)	23						TCCGGGCAATGAGATGTTGCA	0.562000													50	139					0	0	1	0	0
HS6ST2	90161	broad.mit.edu	37	X	132092453	132092453	+	Missense_Mutation	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chrX:132092453G>A	uc011mve.1	-	2	594	c.178C>T	c.(178-180)CAC>TAC	p.H60Y	HS6ST2_uc011mvb.1_5'Flank|HS6ST2_uc011mvc.1_5'Flank|HS6ST2_uc011mvd.1_Missense_Mutation_p.H60Y	NM_147175	NP_671704	Q96MM7	H6ST2_HUMAN	heparan sulfate 6-O-sulfotransferase 2 isoform	60	Lumenal (Potential).					integral to membrane	sulfotransferase activity				0	Acute lymphoblastic leukemia(192;0.000127)					TGGAATCCGTGAGACACACCC	0.711000													5	8					0	0	1	0	0
MMGT1	93380	broad.mit.edu	37	X	135047196	135047196	+	Nonsense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chrX:135047196G>C	uc004ezi.1	-	4	683	c.383C>G	c.(382-384)TCA>TGA	p.S128*	MMGT1_uc011mvw.1_Nonsense_Mutation_p.S193*	NM_173470	NP_775741	Q8N4V1	MMGT1_HUMAN	membrane magnesium transporter 1 precursor	128	Cytoplasmic (Potential).					early endosome membrane|endoplasmic reticulum membrane|Golgi membrane|integral to membrane	magnesium ion transmembrane transporter activity				0						ACGACGCAGTGATTCGAGTTT	0.413000													72	237					0	0	1	0	0
SPANXN2	494119	broad.mit.edu	37	X	142795325	142795325	+	Missense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chrX:142795325G>C	uc004fbz.2	-	2	1107	c.353C>G	c.(352-354)TCT>TGT	p.S118C		NM_001009615	NP_001009615	Q5MJ10	SPXN2_HUMAN	SPANX-N2 protein	118										ovary(1)	1	Acute lymphoblastic leukemia(192;6.56e-05)					AGATCCTTCAGATGAGTCCAG	0.522000													36	410					0	0	1	0	0
SPANXN2	494119	broad.mit.edu	37	X	142795364	142795364	+	Missense_Mutation	SNP	G	C	C			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chrX:142795364G>C	uc004fbz.2	-	2	1068	c.314C>G	c.(313-315)TCT>TGT	p.S105C		NM_001009615	NP_001009615	Q5MJ10	SPXN2_HUMAN	SPANX-N2 protein	105										ovary(1)	1	Acute lymphoblastic leukemia(192;6.56e-05)					AGATCCTTCAGATGAGTCCAG	0.532000													16	542					0	0	1	0	0
FMR1NB	158521	broad.mit.edu	37	X	147090178	147090178	+	Missense_Mutation	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chrX:147090178C>G	uc004fcm.2	+	4	653	c.579C>G	c.(577-579)ATC>ATG	p.I193M		NM_152578	NP_689791	Q8N0W7	FMR1N_HUMAN	fragile X mental retardation 1 neighbor	193	Helical; (Potential).					integral to membrane				ovary(1)	1	Acute lymphoblastic leukemia(192;6.56e-05)					TTGGTGCGATCAGCCTTATCC	0.398000													27	78					0	0	1	0	0
MAGEA11	4110	broad.mit.edu	37	X	148798206	148798206	+	Missense_Mutation	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chrX:148798206G>A	uc004fdq.2	+	5	1162	c.1060G>A	c.(1060-1062)GAG>AAG	p.E354K	HSFX2_uc004fdl.2_Intron|HSFX1_uc004fdm.2_Intron|MAGEA11_uc004fdr.2_Missense_Mutation_p.E325K	NM_005366	NP_005357	P43364	MAGAB_HUMAN	melanoma antigen family A, 11 isoform a	354	MAGE.					cytoplasm|nucleus	protein binding			ovary(2)	2	Acute lymphoblastic leukemia(192;6.56e-05)|Colorectal(9;0.0662)					CCTCTTTGGGGAGCCCAAGAG	0.542000													88	398					0	0	1	0	0
PRRG3	79057	broad.mit.edu	37	X	150869355	150869355	+	Silent	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chrX:150869355C>G	uc004few.1	+	4	936	c.546C>G	c.(544-546)CTC>CTG	p.L182L		NM_024082	NP_076987	Q9BZD7	TMG3_HUMAN	proline rich Gla (G-carboxyglutamic acid) 3	182	Cytoplasmic (Potential).					extracellular region|integral to membrane	calcium ion binding			ovary(3)|skin(1)	4	Acute lymphoblastic leukemia(192;6.56e-05)					AGCTCTCTCTCTCCAGACTGT	0.662000													32	69					0	0	1	0	0
NSDHL	50814	broad.mit.edu	37	X	152031145	152031145	+	Silent	SNP	C	G	G			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chrX:152031145C>G	uc004fgt.1	+	6	681	c.420C>G	c.(418-420)CTC>CTG	p.L140L	NSDHL_uc004fgs.1_Silent_p.L140L	NM_001129765	NP_001123237	Q15738	NSDHL_HUMAN	NAD(P) dependent steroid dehydrogenase-like	140					cholesterol biosynthetic process	endoplasmic reticulum membrane|integral to membrane	3-beta-hydroxy-delta5-steroid dehydrogenase activity|binding|C-3 sterol dehydrogenase (C-4 sterol decarboxylase) activity|sterol-4-alpha-carboxylate 3-dehydrogenase (decarboxylating) activity				0	Acute lymphoblastic leukemia(192;6.56e-05)				NADH(DB00157)	GTCAGAAACTCATTTTAACCA	0.413000													32	129					0	0	1	0	0
PDZD4	57595	broad.mit.edu	37	X	153072748	153072748	+	Missense_Mutation	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chrX:153072748C>T	uc004fiz.1	-	3	623	c.373G>A	c.(373-375)GAG>AAG	p.E125K	PDZD4_uc004fiy.1_Missense_Mutation_p.E50K|PDZD4_uc004fix.2_Missense_Mutation_p.E29K|PDZD4_uc004fja.1_Missense_Mutation_p.E131K|PDZD4_uc011mze.1_Intron	NM_032512	NP_115901	Q76G19	PDZD4_HUMAN	PDZ domain containing 4	125						cell cortex				breast(1)	1	all_lung(58;3.39e-06)|all_hematologic(71;4.25e-06)|Lung NSC(58;4.7e-06)|Acute lymphoblastic leukemia(192;6.56e-05)					TACTCCAGCTCATCCAAGCGG	0.687000													11	20					0	0	1	0	0
MECP2	4204	broad.mit.edu	37	X	153296200	153296200	+	Missense_Mutation	SNP	G	A	A	rs61752372		TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chrX:153296200G>A	uc004fjv.2	-	4	1305	c.1079C>T	c.(1078-1080)TCA>TTA	p.S360L	MECP2_uc004fjw.2_Missense_Mutation_p.S372L	NM_004992	NP_004983	P51608	MECP2_HUMAN	methyl CpG binding protein 2 isoform 1	360					negative regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	heterochromatin|nucleus	double-stranded methylated DNA binding|protein domain specific binding|protein N-terminus binding|transcription corepressor activity				0	all_cancers(53;3.7e-16)|all_epithelial(53;3.44e-10)|all_lung(58;2.06e-07)|Lung NSC(58;2.72e-07)|all_hematologic(71;4.25e-06)|Acute lymphoblastic leukemia(192;6.56e-05)					CTTGGGGGGTGAGGAGGCGCT	0.657000													25	56					0	0	1	0	0
MECP2	4204	broad.mit.edu	37	X	153296613	153296613	+	Silent	SNP	G	A	A	rs61749735		TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chrX:153296613G>A	uc004fjv.2	-	4	892	c.666C>T	c.(664-666)GTC>GTT	p.V222V	MECP2_uc004fjw.2_Silent_p.V234V	NM_004992	NP_004983	P51608	MECP2_HUMAN	methyl CpG binding protein 2 isoform 1	222					negative regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	heterochromatin|nucleus	double-stranded methylated DNA binding|protein domain specific binding|protein N-terminus binding|transcription corepressor activity				0	all_cancers(53;3.7e-16)|all_epithelial(53;3.44e-10)|all_lung(58;2.06e-07)|Lung NSC(58;2.72e-07)|all_hematologic(71;4.25e-06)|Acute lymphoblastic leukemia(192;6.56e-05)					AAGGCATCTTGACAAGGAGCT	0.617000													97	325					0	0	1	0	0
PLXNA3	55558	broad.mit.edu	37	X	153689091	153689091	+	Missense_Mutation	SNP	G	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chrX:153689091G>A	uc004flm.2	+	2	741	c.568G>A	c.(568-570)GAA>AAA	p.E190K		NM_017514	NP_059984	P51805	PLXA3_HUMAN	plexin A3 precursor	190	Sema.|Extracellular (Potential).				axon guidance	integral to membrane|intracellular|plasma membrane	transmembrane receptor activity			upper_aerodigestive_tract(1)|ovary(1)|central_nervous_system(1)	3	all_cancers(53;5.05e-16)|all_epithelial(53;1.87e-10)|all_lung(58;1.84e-07)|Lung NSC(58;5.84e-07)|all_hematologic(71;2.45e-06)|Acute lymphoblastic leukemia(192;6.56e-05)|Breast(217;0.176)					CATCAGTGATGAAGACAGCGC	0.597000													4	179					0	0	1	0	0
BRCC3	79184	broad.mit.edu	37	X	154305476	154305476	+	Missense_Mutation	SNP	C	T	T			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chrX:154305476C>T	uc004fna.2	+	4	320	c.227C>T	c.(226-228)TCT>TTT	p.S76F	BRCC3_uc011mzy.1_Missense_Mutation_p.S77F|BRCC3_uc011mzz.1_RNA|BRCC3_uc004fnb.2_Missense_Mutation_p.S76F	NM_024332	NP_077308	P46736	BRCC3_HUMAN	BRCA1/BRCA2-containing complex, subunit 3	76					double-strand break repair|G2/M transition DNA damage checkpoint|histone H2A K63-linked deubiquitination|positive regulation of DNA repair|response to X-ray	BRCA1-A complex|BRISC complex|nuclear ubiquitin ligase complex	enzyme regulator activity|metal ion binding|metallopeptidase activity|polyubiquitin binding|ubiquitin thiolesterase activity|ubiquitin-specific protease activity			lung(3)|ovary(1)|large_intestine(1)|breast(1)	6	all_cancers(53;1.86e-17)|all_epithelial(53;2.71e-11)|all_lung(58;1.84e-07)|Lung NSC(58;5.62e-07)|all_hematologic(71;2.45e-06)|Acute lymphoblastic leukemia(192;6.56e-05)|Breast(217;0.176)|Renal(33;0.214)					CACATTCATTCTGTCATCATC	0.428000													26	85					0	0	1	0	0
UBR4	23352	broad.mit.edu	37	1	19490290	19490290	+	Frame_Shift_Del	DEL	C	-	-			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr1:19490290delC	uc001bbi.2	-	34	4736	c.4732delG	c.(4732-4734)GAAfs	p.E1578fs	UBR4_uc001bbm.1_Frame_Shift_Del_p.E789fs	NM_020765	NP_065816	Q5T4S7	UBR4_HUMAN	retinoblastoma-associated factor 600	1578					interspecies interaction between organisms	cytoplasm|cytoskeleton|integral to membrane|nucleus	calmodulin binding|ubiquitin-protein ligase activity|zinc ion binding			kidney(10)|ovary(7)|breast(4)|pancreas(2)|skin(2)	25		Colorectal(325;3.46e-05)|Renal(390;0.000147)|all_lung(284;0.000328)|Lung NSC(340;0.000406)|Breast(348;0.000814)|Ovarian(437;0.00774)|Myeloproliferative disorder(586;0.0256)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00674)|BRCA - Breast invasive adenocarcinoma(304;5.43e-05)|Kidney(64;0.000337)|KIRC - Kidney renal clear cell carcinoma(64;0.00426)|STAD - Stomach adenocarcinoma(196;0.00715)|READ - Rectum adenocarcinoma(331;0.0816)		TTCAGTTTTTCAACTACATTC	0.428													24	237	---	---	---	---					
TP53BP2	7159	broad.mit.edu	37	1	223983577	223983578	+	Frame_Shift_Ins	INS	-	GGCC	GGCC	rs150724907		TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr1:223983577_223983578insGGCC	uc010pvb.1	-	13	2955_2956	c.2663_2664insGGCC	c.(2662-2664)CCCfs	p.P888fs	TP53BP2_uc001hod.2_Frame_Shift_Ins_p.P759fs|TP53BP2_uc010puz.1_Frame_Shift_Ins_p.P121fs|TP53BP2_uc010pva.1_Frame_Shift_Ins_p.P527fs	NM_001031685	NP_001026855	Q13625	ASPP2_HUMAN	tumor protein p53 binding protein, 2 isoform 1	882	Mediates interaction with APC2.|Pro-rich.				apoptosis|cell cycle|induction of apoptosis|negative regulation of cell cycle|signal transduction	nucleus|perinuclear region of cytoplasm	NF-kappaB binding|protein binding|SH3 domain binding|SH3/SH2 adaptor activity			ovary(2)|lung(1)	3				GBM - Glioblastoma multiforme(131;0.0958)		AGTCTTCTCCGGGCCCTTCAGG	0.559													15	211	---	---	---	---					
Unknown	0	broad.mit.edu	37	10	134206066	134206068	+	IGR	DEL	TGG	-	-	rs72458419		TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr10:134206066_134206068delTGG								LRRC27 (11056 upstream) : PWWP2B (4634 downstream)																							gtggtggtaatggtgatgatggt	0.000													3	5	---	---	---	---					
PLEKHA7	144100	broad.mit.edu	37	11	16822525	16822525	+	Frame_Shift_Del	DEL	A	-	-			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr11:16822525delA	uc001mmo.2	-	17	2420	c.2405delT	c.(2404-2406)TTCfs	p.F802fs	PLEKHA7_uc010rcu.1_Frame_Shift_Del_p.F802fs|PLEKHA7_uc010rcv.1_Frame_Shift_Del_p.F376fs|PLEKHA7_uc001mmn.2_Frame_Shift_Del_p.F510fs	NM_175058	NP_778228	Q6IQ23	PKHA7_HUMAN	pleckstrin homology domain containing, family A	802					epithelial cell-cell adhesion|zonula adherens maintenance	centrosome|zonula adherens	delta-catenin binding			skin(2)|central_nervous_system(1)	3						GGTCACCTGGAAAAAAAAGGC	0.423													7	206	---	---	---	---					
UVRAG	7405	broad.mit.edu	37	11	75591018	75591018	+	Frame_Shift_Del	DEL	G	-	-			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr11:75591018delG	uc001oxc.2	+	4	607	c.366delG	c.(364-366)GAGfs	p.E122fs	UVRAG_uc010rrw.1_Frame_Shift_Del_p.E21fs	NM_003369	NP_003360	Q9P2Y5	UVRAG_HUMAN	UV radiation resistance associated	122	C2.				DNA repair|positive regulation of autophagy	early endosome|late endosome|lysosome	protein binding			skin(4)|lung(2)	6						GTGGAAAGGAGAACATCTACC	0.433													73	280	---	---	---	---					
MIR620	693205	broad.mit.edu	37	12	116586415	116586418	+	RNA	DEL	TATA	-	-	rs10549054		TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr12:116586415_116586418delTATA	hsa-mir-620|MI0003634	-			c.42_45delTATA			MED13L_uc001tvw.2_Intron																	0						tggagatatctatatatatatata	0.196													3	5	---	---	---	---					
Unknown	0	broad.mit.edu	37	13	31652509	31652516	+	IGR	DEL	AAGGAAGA	-	-	rs148041842	by1000genomes	TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr13:31652509_31652516delAAGGAAGA								C13orf26 (103358 upstream) : HSPH1 (58249 downstream)																							ggaaggaaggaaggaagaaagaaagaaa	0.192													4	8	---	---	---	---					
SYNE2	23224	broad.mit.edu	37	14	64610660	64610661	+	Frame_Shift_Ins	INS	-	A	A			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr14:64610660_64610661insA	uc001xgm.2	+	83	15707_15708	c.15477_15478insA	c.(15475-15480)AATAGAfs	p.N5159fs	SYNE2_uc001xgl.2_Frame_Shift_Ins_p.N5159fs|SYNE2_uc010apy.2_Frame_Shift_Ins_p.N1544fs|SYNE2_uc001xgn.2_Frame_Shift_Ins_p.N121fs|SYNE2_uc001xgo.2_RNA	NM_015180	NP_055995	Q8WXH0	SYNE2_HUMAN	spectrin repeat containing, nuclear envelope 2	5159_5160	Spectrin 2.|Cytoplasmic (Potential).				centrosome localization|cytoskeletal anchoring at nuclear membrane|nuclear migration along microfilament|positive regulation of cell migration	cytoskeleton|filopodium membrane|focal adhesion|integral to membrane|lamellipodium membrane|mitochondrial part|nuclear outer membrane|nucleoplasm|sarcoplasmic reticulum membrane|SUN-KASH complex|Z disc	actin binding|protein binding			ovary(8)|breast(4)|central_nervous_system(1)|pancreas(1)	14				all cancers(60;0.00153)|OV - Ovarian serous cystadenocarcinoma(108;0.00444)|BRCA - Breast invasive adenocarcinoma(234;0.0681)		GAATGCTGAATAGAAAGGTGTG	0.446													7	388	---	---	---	---					
Unknown	0	broad.mit.edu	37	14	85281016	85281023	+	IGR	DEL	CCTCCCTC	-	-	rs76839618		TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr14:85281016_85281023delCCTCCCTC								None (None upstream) : FLRT2 (715465 downstream)																							tcccttccttcctccctccctccctccc	0.125													4	8	---	---	---	---					
Unknown	0	broad.mit.edu	37	15	20454213	20454214	+	IGR	INS	-	T	T	rs144687403		TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr15:20454213_20454214insT								None (None upstream) : GOLGA6L6 (282880 downstream)																							GACCCTCAAGCtttttttttct	0.267													2	4	---	---	---	---					
DYNC1LI2	1783	broad.mit.edu	37	16	66764083	66764083	+	Frame_Shift_Del	DEL	C	-	-			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr16:66764083delC	uc002eqb.1	-	8	1004	c.973delG	c.(973-975)GAAfs	p.E325fs	DYNC1LI2_uc010vis.1_Frame_Shift_Del_p.E248fs	NM_006141	NP_006132	O43237	DC1L2_HUMAN	dynein, cytoplasmic, light intermediate	325					transport	centrosome|cytoplasmic dynein complex|microtubule	ATP binding|motor activity			central_nervous_system(3)|skin(1)	4		Ovarian(137;0.0563)		OV - Ovarian serous cystadenocarcinoma(108;0.0907)|Epithelial(162;0.212)		GTAAAATTTTCATGTAAAATA	0.413													21	61	---	---	---	---					
Unknown	0	broad.mit.edu	37	17	19091582	19091583	+	IGR	INS	-	GTAATT	GTAATT			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr17:19091582_19091583insGTAATT								GRAPL (29434 upstream) : EPN2 (49107 downstream)																							GAGACTAGCTCGTAAACTCCGG	0.366													7	81	---	---	---	---					
Unknown	0	broad.mit.edu	37	17	76490463	76490463	+	5'Flank	DEL	C	-	-	rs34910684		TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr17:76490463delC	uc002jvt.1	+											Homo sapiens cDNA FLJ45552 fis, clone BRTHA2038279.																		TTGCCTGAAGCCCCCCCAGCC	0.627													3	3	---	---	---	---					
ZNF750	79755	broad.mit.edu	37	17	80789825	80789826	+	Frame_Shift_Ins	INS	-	T	T	rs142698629		TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr17:80789825_80789826insT	uc002kga.2	-	2	816_817	c.505_506insA	c.(505-507)AGAfs	p.R169fs	TBCD_uc002kfx.1_Intron|TBCD_uc002kfy.1_Intron|TBCD_uc002kfz.2_Intron	NM_024702	NP_078978	Q32MQ0	ZN750_HUMAN	zinc finger protein 750	169						intracellular	zinc ion binding			central_nervous_system(1)	1	Breast(20;0.000523)|all_neural(118;0.0779)	all_cancers(8;0.0514)|all_epithelial(8;0.0748)	OV - Ovarian serous cystadenocarcinoma(97;0.0868)|BRCA - Breast invasive adenocarcinoma(99;0.149)			CCCCTTGAGTCTGTGCTCGCCG	0.634													42	56	---	---	---	---					
KIR2DL1	3802	broad.mit.edu	37	19	55286905	55286905	+	Frame_Shift_Del	DEL	T	-	-			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr19:55286905delT	uc002qhb.1	+	4	697	c.659delT	c.(658-660)GTCfs	p.V220fs	KIR2DS4_uc010yfj.1_Intron|KIR2DS4_uc010yfk.1_Intron|KIR2DL3_uc010erw.1_Intron|KIR2DL1_uc002qgz.1_Intron|KIR2DL3_uc002qha.1_RNA|KIR3DP1_uc010yfi.1_Intron|KIR2DL1_uc010erz.1_Frame_Shift_Del_p.V220fs	NM_014218	NP_055033	P43626	KI2L1_HUMAN	killer cell immunoglobulin-like receptor, two	220	Extracellular (Potential).				immune response|natural killer cell inhibitory signaling pathway	integral to plasma membrane	protein binding|receptor activity				0				GBM - Glioblastoma multiforme(193;0.0192)		CTTGTTTCTGTCACAGGTGAG	0.547													7	254	---	---	---	---					
Unknown	0	broad.mit.edu	37	22	32783188	32783188	+	IGR	DEL	A	-	-	rs71976161		TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr22:32783188delA								RFPL3S (16125 upstream) : C22orf28 (374 downstream)																							actcagtctcaaaaaaaaaaa	0.249													3	4	---	---	---	---					
FBLN2	2199	broad.mit.edu	37	3	13679362	13679362	+	Frame_Shift_Del	DEL	C	-	-			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr3:13679362delC	uc011avb.1	+	17	3623	c.3498delC	c.(3496-3498)GGCfs	p.G1166fs	FBLN2_uc011auz.1_Frame_Shift_Del_p.G1192fs|FBLN2_uc011ava.1_Frame_Shift_Del_p.G1213fs|FBLN2_uc011avc.1_Frame_Shift_Del_p.G1213fs	NM_001998	NP_001989	P98095	FBLN2_HUMAN	fibulin 2 isoform b precursor	1166	Domain III.					proteinaceous extracellular matrix	calcium ion binding|extracellular matrix structural constituent			ovary(1)	1			UCEC - Uterine corpus endometrioid carcinoma (1;0.00416)			GGAGGCAGGGCTCCGTCACCA	0.657													49	231	---	---	---	---					
Unknown	0	broad.mit.edu	37	3	32677111	32677112	+	IGR	INS	-	GA	GA	rs57104538		TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr3:32677111_32677112insGA								DYNC1LI1 (64761 upstream) : CNOT10 (49586 downstream)																							CAGGACGCGAGAAAAAAAAAAG	0.292													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	4	34658614	34658617	+	IGR	DEL	AAGG	-	-	rs34265374		TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr4:34658614_34658617delAAGG								None (None upstream) : None (None downstream)																							tttgggcagcaaggaaggaaggaa	0.000													2	4	---	---	---	---					
OSTC	58505	broad.mit.edu	37	4	109578771	109578771	+	Frame_Shift_Del	DEL	C	-	-			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr4:109578771delC	uc003hzb.1	+	3	470	c.399delC	c.(397-399)TTCfs	p.F133fs		NM_021227	NP_067050	Q9NRP0	OSTC_HUMAN	DC2 protein	133	Helical; (Potential).					integral to membrane|oligosaccharyltransferase complex				breast(1)	1						TGAGTTTTTTCATGGCTAGAG	0.363													11	51	---	---	---	---					
Unknown	0	broad.mit.edu	37	6	80779316	80779316	+	IGR	DEL	G	-	-			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr6:80779316delG								TTK (27079 upstream) : BCKDHB (37028 downstream)																							TATAAGCTTCGTTGCCTTTCA	0.458													15	44	---	---	---	---					
NDUFA5	4698	broad.mit.edu	37	7	123182233	123182233	+	Frame_Shift_Del	DEL	C	-	-			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr7:123182233delC	uc003vks.2	-	5	400	c.291delG	c.(289-291)TGGfs	p.W97fs	NDUFA5_uc003vkr.2_RNA	NM_005000	NP_004991	Q16718	NDUA5_HUMAN	NADH dehydrogenase (ubiquinone) 1 alpha	97					mitochondrial electron transport, NADH to ubiquinone|transport	mitochondrial respiratory chain complex I	NADH dehydrogenase (ubiquinone) activity				0					NADH(DB00157)	CCCATAGTTTCCATTCCCTCA	0.358													21	67	---	---	---	---					
MTDH	92140	broad.mit.edu	37	8	98701269	98701287	+	Frame_Shift_Del	DEL	ATTCTCATCTAAATGTTCA	-	-			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chr8:98701269_98701287delATTCTCATCTAAATGTTCA	uc003yhz.2	+	5	1077_1095	c.749_767delATTCTCATCTAAATGTTCA	c.(748-768)GATTCTCATCTAAATGTTCAAfs	p.D250fs	MTDH_uc010mbf.2_5'Flank	NM_178812	NP_848927	Q86UE4	LYRIC_HUMAN	metadherin	250_256	Cytoplasmic (Potential).				lipopolysaccharide-mediated signaling pathway|negative regulation of apoptosis|negative regulation of transcription from RNA polymerase II promoter|positive regulation of angiogenesis|positive regulation of autophagy|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of NF-kappaB transcription factor activity|positive regulation of protein kinase B signaling cascade	apical plasma membrane|endoplasmic reticulum membrane|integral to membrane|intercellular canaliculus|nuclear body|nuclear membrane|nucleolus|perinuclear region of cytoplasm|tight junction	NF-kappaB binding|RNA polymerase II transcription factor binding|transcription coactivator activity			liver(1)|central_nervous_system(1)	2	Breast(36;2.56e-06)		OV - Ovarian serous cystadenocarcinoma(57;0.178)			taaCCAGGTGATTCTCATCTAAATGTTCAAGTTAGCAAC	0.251													8	66	---	---	---	---					
Unknown	0	broad.mit.edu	37	X	1680330	1680333	+	IGR	DEL	CTTC	-	-			TCGA-DR-A0ZM-01A-12D-A10S-08	TCGA-DR-A0ZM-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a3d0def-beb2-4b64-b1a6-4b44d8544896	c1ad28fe-984a-4158-aaaa-bdb09b70d86b	g.chrX:1680330_1680333delCTTC								P2RY8 (24293 upstream) : SFRS17A (30153 downstream)																							ttctttctttcttccttccttcct	0.000													6	4	---	---	---	---					
