Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	Algorithm
TPR	7175	hgsc.bcm.edu	37	1	186310266	186310266	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-BC-A69I-01A-11D-A30V-10	TCGA-BC-A69I-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ce1b736-149a-4b4a-92ca-d02d98cb8671	ca229805-3ddd-41b7-bd5c-3e13e5a1cb8c	.	TPR	NM_003292	exon29	c.3915delA	p.L1305fs	.	.	204.0	50.0	146.0	0.0	.	.	Atlas-Indel,Pindel
TCF7L1	83439	hgsc.bcm.edu	37	2	85360829	85360831	+	In_Frame_Del	DEL	GGC	GGC	-	novel		TCGA-BC-A69I-01A-11D-A30V-10	TCGA-BC-A69I-10A-01D-A30V-10	GGC	GGC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ce1b736-149a-4b4a-92ca-d02d98cb8671	ca229805-3ddd-41b7-bd5c-3e13e5a1cb8c	.	TCF7L1	NM_031283	exon1	c.21_23del	p.7_8del	.	.	10.0	10.0	0.0	0.0	.	.	Atlas-Indel
ACVR2A	92	hgsc.bcm.edu	37	2	148676024	148676024	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-BC-A69I-01A-11D-A30V-10	TCGA-BC-A69I-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ce1b736-149a-4b4a-92ca-d02d98cb8671	ca229805-3ddd-41b7-bd5c-3e13e5a1cb8c	.	ACVR2A	NM_001616	exon7	c.824delT	p.L275fs	.	.	122.0	41.0	137.0	0.0	.	.	Atlas-Indel,Pindel
KIAA0040	9674	hgsc.bcm.edu	37	1	175129947	175129955	+	In_Frame_Del	DEL	TTCTTCTTG	TTCTTCTTG	-	novel		TCGA-BC-A69I-01A-11D-A30V-10	TCGA-BC-A69I-10A-01D-A30V-10	TTCTTCTTG	TTCTTCTTG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ce1b736-149a-4b4a-92ca-d02d98cb8671	ca229805-3ddd-41b7-bd5c-3e13e5a1cb8c	.	.	NM_001162893	exon5	c.196_204del	p.66_68del	.	.	59.0	15.0	62.0	0.0	.	.	Atlas-Indel
KIAA0100	9703	hgsc.bcm.edu	37	17	26945960	26945960	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BC-A69I-01A-11D-A30V-10	TCGA-BC-A69I-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ce1b736-149a-4b4a-92ca-d02d98cb8671	ca229805-3ddd-41b7-bd5c-3e13e5a1cb8c	.	KIAA0100	NM_014680	exon32	c.C5672A	p.A1891D	TTGTTAGCCCGCT	.	50.0	4.0	43.0	0.0	.	.	Atlas-SNP
SOCS7	30837	hgsc.bcm.edu	37	17	36508877	36508877	+	Silent	SNP	C	C	T	novel		TCGA-BC-A69I-01A-11D-A30V-10	TCGA-BC-A69I-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ce1b736-149a-4b4a-92ca-d02d98cb8671	ca229805-3ddd-41b7-bd5c-3e13e5a1cb8c	.	SOCS7	NM_014598	exon1	c.C750T	p.D250D	GACAGACATGGGA	.	34.0	14.0	42.0	0.0	.	.	Atlas-SNP
GRID2IP	392862	hgsc.bcm.edu	37	7	6590693	6590693	+	Silent	SNP	G	G	A	rs6463571	bycluster;byfrequency;by2hit2allele;by1000genomes	TCGA-BC-A69I-01A-11D-A30V-10	TCGA-BC-A69I-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ce1b736-149a-4b4a-92ca-d02d98cb8671	ca229805-3ddd-41b7-bd5c-3e13e5a1cb8c	.	.	NM_001145118	exon1	c.C375T	p.R125R	GTCCGGGCGCTTG	.	5.0	5.0	0.0	0.0	G|0.233;A|0.767	.	Atlas-SNP
MLL4	8085	hgsc.bcm.edu	37	19	36211874	36211874	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BC-A69I-01A-11D-A30V-10	TCGA-BC-A69I-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ce1b736-149a-4b4a-92ca-d02d98cb8671	ca229805-3ddd-41b7-bd5c-3e13e5a1cb8c	.	MLL4	NM_014727	exon3	c.C1625G	p.T542R	TCAAGACACCCCG	.	46.0	14.0	46.0	0.0	.	.	Atlas-SNP
GIGYF2	26058	hgsc.bcm.edu	37	2	233712223	233712223	+	Missense_Mutation	SNP	T	T	C	rs114013774	byfrequency;alternate_allele	TCGA-BC-A69I-01A-11D-A30V-10	TCGA-BC-A69I-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ce1b736-149a-4b4a-92ca-d02d98cb8671	ca229805-3ddd-41b7-bd5c-3e13e5a1cb8c	.	GIGYF2	NM_001103147	exon29	c.T3689C	p.L1230P	AGCAGCTGCCACA	.	70.0	24.0	41.0	0.0	T|0.966;A|0.034	.	Atlas-SNP
SALL1	6299	hgsc.bcm.edu	37	16	51175655	51175655	+	Missense_Mutation	SNP	C	C	T	rs199760974		TCGA-BC-A69I-01A-11D-A30V-10	TCGA-BC-A69I-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ce1b736-149a-4b4a-92ca-d02d98cb8671	ca229805-3ddd-41b7-bd5c-3e13e5a1cb8c	.	SALL1	NM_002968	exon2	c.G478A	p.G160S	CGCCGCCGCTGCT	.	62.0	4.0	62.0	0.0	.	.	Atlas-SNP
FLOT1	10211	hgsc.bcm.edu	37	6	30708308	30708308	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A69I-01A-11D-A30V-10	TCGA-BC-A69I-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ce1b736-149a-4b4a-92ca-d02d98cb8671	ca229805-3ddd-41b7-bd5c-3e13e5a1cb8c	.	FLOT1	NM_005803	exon7	c.G535A	p.G179R	CTTCTCCAATCCG	.	163.0	94.0	121.0	0.0	.	.	Atlas-SNP
SIX5	147912	hgsc.bcm.edu	37	19	46269999	46269999	+	Silent	SNP	T	T	C	novel		TCGA-BC-A69I-01A-11D-A30V-10	TCGA-BC-A69I-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ce1b736-149a-4b4a-92ca-d02d98cb8671	ca229805-3ddd-41b7-bd5c-3e13e5a1cb8c	.	SIX5	NM_175875	exon2	c.A1218G	p.K406K	GGCCCCTTTGGTC	.	36.0	11.0	42.0	0.0	.	.	Atlas-SNP
WDFY3	23001	hgsc.bcm.edu	37	4	85634394	85634394	+	Splice_Site	SNP	T	T	C	novel		TCGA-BC-A69I-01A-11D-A30V-10	TCGA-BC-A69I-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ce1b736-149a-4b4a-92ca-d02d98cb8671	ca229805-3ddd-41b7-bd5c-3e13e5a1cb8c	.	WDFY3	NM_014991	exon52	c.7962-2A>G	.	AAAACCTGAAAAA	.	52.0	16.0	57.0	0.0	.	.	Atlas-SNP
RAB23	51715	hgsc.bcm.edu	37	6	57075158	57075158	+	Silent	SNP	T	T	C	novel		TCGA-BC-A69I-01A-11D-A30V-10	TCGA-BC-A69I-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ce1b736-149a-4b4a-92ca-d02d98cb8671	ca229805-3ddd-41b7-bd5c-3e13e5a1cb8c	.	RAB23	NM_016277	exon2	c.A21G	p.E7E	GGCGACTTCCATA	.	147.0	35.0	107.0	0.0	.	.	Atlas-SNP
WDFY4	57705	hgsc.bcm.edu	37	10	49951349	49951349	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BC-A69I-01A-11D-A30V-10	TCGA-BC-A69I-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ce1b736-149a-4b4a-92ca-d02d98cb8671	ca229805-3ddd-41b7-bd5c-3e13e5a1cb8c	.	WDFY4	NM_020945	exon12	c.G2215T	p.A739S	ACAAAGGCCAGGC	.	63.0	25.0	58.0	0.0	.	.	Atlas-SNP
TYRO3	7301	hgsc.bcm.edu	37	15	41860482	41860482	+	Silent	SNP	A	A	G	novel		TCGA-BC-A69I-01A-11D-A30V-10	TCGA-BC-A69I-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ce1b736-149a-4b4a-92ca-d02d98cb8671	ca229805-3ddd-41b7-bd5c-3e13e5a1cb8c	.	TYRO3	NM_006293	exon8	c.A1029G	p.E343E	GTGGGAAGAAGTG	.	119.0	15.0	117.0	0.0	.	.	Atlas-SNP
FOXD4	2298	hgsc.bcm.edu	37	9	117117	117117	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BC-A69I-01A-11D-A30V-10	TCGA-BC-A69I-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ce1b736-149a-4b4a-92ca-d02d98cb8671	ca229805-3ddd-41b7-bd5c-3e13e5a1cb8c	.	FOXD4	NM_207305	exon1	c.C1003T	p.Q335X	GCCCCTGTACCCG	.	125.0	29.0	125.0	0.0	.	.	Atlas-SNP
MIDN	90007	hgsc.bcm.edu	37	19	1254228	1254228	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A69I-01A-11D-A30V-10	TCGA-BC-A69I-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ce1b736-149a-4b4a-92ca-d02d98cb8671	ca229805-3ddd-41b7-bd5c-3e13e5a1cb8c	.	MIDN	NM_177401	exon5	c.G447A	p.M149I	CCACATGATGTTC	.	24.0	9.0	25.0	0.0	.	.	Atlas-SNP
CACNA1B	774	hgsc.bcm.edu	37	9	141008900	141008900	+	Silent	SNP	C	C	G	novel		TCGA-BC-A69I-01A-11D-A30V-10	TCGA-BC-A69I-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ce1b736-149a-4b4a-92ca-d02d98cb8671	ca229805-3ddd-41b7-bd5c-3e13e5a1cb8c	.	CACNA1B	NM_001243812	exon40	c.C5607G	p.T1869T	CAAAACCACCAGA	.	54.0	18.0	53.0	0.0	.	.	Atlas-SNP
ZXDC	79364	hgsc.bcm.edu	37	3	126194357	126194357	+	Missense_Mutation	SNP	G	G	C	rs7624748		TCGA-BC-A69I-01A-11D-A30V-10	TCGA-BC-A69I-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ce1b736-149a-4b4a-92ca-d02d98cb8671	ca229805-3ddd-41b7-bd5c-3e13e5a1cb8c	.	ZXDC	NM_025112	exon1	c.C352G	p.P118A	CGGGGGGGGCGGC	.	5.0	5.0	0.0	0.0	G|0.098;C|0.902	.	Atlas-SNP
OR6N2	81442	hgsc.bcm.edu	37	1	158747099	158747099	+	Silent	SNP	C	C	A	novel		TCGA-BC-A69I-01A-11D-A30V-10	TCGA-BC-A69I-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ce1b736-149a-4b4a-92ca-d02d98cb8671	ca229805-3ddd-41b7-bd5c-3e13e5a1cb8c	.	OR6N2	NM_001005278	exon1	c.G327T	p.A109A	TTCAGACGCTCCC	.	341.0	14.0	210.0	0.0	.	.	Atlas-SNP
TRIM25	7706	hgsc.bcm.edu	37	17	54991332	54991332	+	Silent	SNP	G	G	T	novel		TCGA-BC-A69I-01A-11D-A30V-10	TCGA-BC-A69I-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ce1b736-149a-4b4a-92ca-d02d98cb8671	ca229805-3ddd-41b7-bd5c-3e13e5a1cb8c	.	TRIM25	NM_005082	exon1	c.C18A	p.P6P	GGCCAGGGGGCAC	.	39.0	14.0	33.0	0.0	.	.	Atlas-SNP
CTNNB1	1499	hgsc.bcm.edu	37	3	41266107	41266107	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BC-A69I-01A-11D-A30V-10	TCGA-BC-A69I-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ce1b736-149a-4b4a-92ca-d02d98cb8671	ca229805-3ddd-41b7-bd5c-3e13e5a1cb8c	CTNNB1,NS,carcinoma,0	CTNNB1	NM_001098209	exon3	c.T104G	p.I35S	CTGGAATCCATTC	.	140.0	46.0	140.0	0.0	.	.	Atlas-SNP
CDH7	1005	hgsc.bcm.edu	37	18	63430231	63430231	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BC-A69I-01A-11D-A30V-10	TCGA-BC-A69I-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ce1b736-149a-4b4a-92ca-d02d98cb8671	ca229805-3ddd-41b7-bd5c-3e13e5a1cb8c	.	CDH7	NM_004361	exon2	c.G153A	p.W51X	GGTGTGGAATCAG	.	167.0	45.0	154.0	0.0	.	.	Atlas-SNP
TUT1	64852	hgsc.bcm.edu	37	11	62343122	62343122	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A69I-01A-11D-A30V-10	TCGA-BC-A69I-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ce1b736-149a-4b4a-92ca-d02d98cb8671	ca229805-3ddd-41b7-bd5c-3e13e5a1cb8c	.	TUT1	NM_022830	exon9	c.A2183G	p.E728G	ATCTCTTCTACCC	.	77.0	33.0	72.0	0.0	.	.	Atlas-SNP
PPP6R1	22870	hgsc.bcm.edu	37	19	55742007	55742007	+	Silent	SNP	C	C	T	rs200738242		TCGA-BC-A69I-01A-11D-A30V-10	TCGA-BC-A69I-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ce1b736-149a-4b4a-92ca-d02d98cb8671	ca229805-3ddd-41b7-bd5c-3e13e5a1cb8c	.	PPP6R1	NM_014931	exon23	c.G2616A	p.P872P	CCCTTCCGGGGCA	.	64.0	19.0	45.0	0.0	C|0.999;T|0.001	.	Atlas-SNP
TENM4	26011	hgsc.bcm.edu	37	11	78482152	78482152	+	Silent	SNP	G	G	T	novel		TCGA-BC-A69I-01A-11D-A30V-10	TCGA-BC-A69I-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ce1b736-149a-4b4a-92ca-d02d98cb8671	ca229805-3ddd-41b7-bd5c-3e13e5a1cb8c	.	.	NM_001098816	exon18	c.C2424A	p.G808G	ACATCTGCCGTTG	.	103.0	23.0	72.0	0.0	.	.	Atlas-SNP
FAM111A	63901	hgsc.bcm.edu	37	11	58919865	58919865	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BC-A69I-01A-11D-A30V-10	TCGA-BC-A69I-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ce1b736-149a-4b4a-92ca-d02d98cb8671	ca229805-3ddd-41b7-bd5c-3e13e5a1cb8c	.	FAM111A	NM_001142520	exon5	c.C724A	p.L242I	TGGAAACTCATTG	.	108.0	17.0	109.0	0.0	.	.	Atlas-SNP
CALHM1	255022	hgsc.bcm.edu	37	10	105217980	105217980	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A69I-01A-11D-A30V-10	TCGA-BC-A69I-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ce1b736-149a-4b4a-92ca-d02d98cb8671	ca229805-3ddd-41b7-bd5c-3e13e5a1cb8c	.	CALHM1	NM_001001412	exon1	c.G529A	p.V177M	AACGCACGGCCAC	.	116.0	6.0	90.0	0.0	.	.	Atlas-SNP
TTN	7273	hgsc.bcm.edu	37	2	179546449	179546449	+	Silent	SNP	G	G	T	novel		TCGA-BC-A69I-01A-11D-A30V-10	TCGA-BC-A69I-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ce1b736-149a-4b4a-92ca-d02d98cb8671	ca229805-3ddd-41b7-bd5c-3e13e5a1cb8c	.	TTN	NM_001267550	exon136	c.C33111A	p.I11037I	TACAGGGATAGGC	.	121.0	5.0	125.0	0.0	.	.	Atlas-SNP
MTOR	2475	hgsc.bcm.edu	37	1	11259619	11259619	+	Silent	SNP	T	T	C	novel		TCGA-BC-A69I-01A-11D-A30V-10	TCGA-BC-A69I-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ce1b736-149a-4b4a-92ca-d02d98cb8671	ca229805-3ddd-41b7-bd5c-3e13e5a1cb8c	.	MTOR	NM_004958	exon27	c.A4086G	p.E1362E	CATGAATTCAGCC	.	89.0	32.0	103.0	0.0	.	.	Atlas-SNP
FAM91A1	157769	hgsc.bcm.edu	37	8	124801892	124801892	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A69I-01A-11D-A30V-10	TCGA-BC-A69I-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ce1b736-149a-4b4a-92ca-d02d98cb8671	ca229805-3ddd-41b7-bd5c-3e13e5a1cb8c	.	FAM91A1	NM_144963	exon15	c.G1318A	p.D440N	TATTTTGATCATG	.	200.0	50.0	181.0	0.0	.	.	Atlas-SNP
PAK2	5062	hgsc.bcm.edu	37	3	196541330	196541330	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A69I-01A-11D-A30V-10	TCGA-BC-A69I-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ce1b736-149a-4b4a-92ca-d02d98cb8671	ca229805-3ddd-41b7-bd5c-3e13e5a1cb8c	.	PAK2	NM_002577	exon11	c.T944C	p.V315A	ACCTGGTAGGAGA	.	112.0	39.0	137.0	0.0	.	.	Atlas-SNP
RNPEP	6051	hgsc.bcm.edu	37	1	201969092	201969092	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A69I-01A-11D-A30V-10	TCGA-BC-A69I-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ce1b736-149a-4b4a-92ca-d02d98cb8671	ca229805-3ddd-41b7-bd5c-3e13e5a1cb8c	.	RNPEP	NM_020216	exon6	c.A1153G	p.I385V	ATGGACATCACTG	.	82.0	23.0	78.0	0.0	.	.	Atlas-SNP
PLA2G1B	5319	hgsc.bcm.edu	37	12	120763805	120763805	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A69I-01A-11D-A30V-10	TCGA-BC-A69I-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ce1b736-149a-4b4a-92ca-d02d98cb8671	ca229805-3ddd-41b7-bd5c-3e13e5a1cb8c	.	PLA2G1B	NM_000928	exon2	c.G53A	p.G18D	CTGATGCCGCTGT	.	45.0	9.0	43.0	0.0	.	.	Atlas-SNP
UBASH3B	84959	hgsc.bcm.edu	37	11	122650347	122650347	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BC-A69I-01A-11D-A30V-10	TCGA-BC-A69I-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ce1b736-149a-4b4a-92ca-d02d98cb8671	ca229805-3ddd-41b7-bd5c-3e13e5a1cb8c	.	UBASH3B	NM_032873	exon4	c.C545A	p.A182E	ACAGTGCGGAGGT	.	73.0	13.0	48.0	0.0	.	.	Atlas-SNP
SAC3D1	29901	hgsc.bcm.edu	37	11	64809167	64809167	+	Missense_Mutation	SNP	A	A	G	rs10792456		TCGA-BC-A69I-01A-11D-A30V-10	TCGA-BC-A69I-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ce1b736-149a-4b4a-92ca-d02d98cb8671	ca229805-3ddd-41b7-bd5c-3e13e5a1cb8c	.	SAC3D1	NM_013299	exon1	c.A403G	p.T135A	CTGCTGACCGTAG	.	5.0	5.0	0.0	0.0	A|0.059;G|0.941	.	Atlas-SNP
RYR2	6262	hgsc.bcm.edu	37	1	237777779	237777779	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BC-A69I-01A-11D-A30V-10	TCGA-BC-A69I-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ce1b736-149a-4b4a-92ca-d02d98cb8671	ca229805-3ddd-41b7-bd5c-3e13e5a1cb8c	.	RYR2	NM_001035	exon37	c.T5351G	p.L1784R	TCCCACTGGACAT	.	173.0	19.0	103.0	0.0	.	.	Atlas-SNP
MTF1	4520	hgsc.bcm.edu	37	1	38297937	38297937	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BC-A69I-01A-11D-A30V-10	TCGA-BC-A69I-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ce1b736-149a-4b4a-92ca-d02d98cb8671	ca229805-3ddd-41b7-bd5c-3e13e5a1cb8c	.	MTF1	NM_005955	exon7	c.T1048G	p.L350V	CTCGCAATTCAGA	.	109.0	36.0	90.0	0.0	.	.	Atlas-SNP
PARP14	54625	hgsc.bcm.edu	37	3	122419048	122419048	+	Silent	SNP	A	A	G	novel		TCGA-BC-A69I-01A-11D-A30V-10	TCGA-BC-A69I-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ce1b736-149a-4b4a-92ca-d02d98cb8671	ca229805-3ddd-41b7-bd5c-3e13e5a1cb8c	.	PARP14	NM_017554	exon6	c.A1647G	p.V549V	ACAGGTAAACTGG	.	121.0	27.0	143.0	0.0	.	.	Atlas-SNP
PCDHGA4	56111	hgsc.bcm.edu	37	5	140735702	140735702	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BC-A69I-01A-11D-A30V-10	TCGA-BC-A69I-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ce1b736-149a-4b4a-92ca-d02d98cb8671	ca229805-3ddd-41b7-bd5c-3e13e5a1cb8c	.	.	NM_018917	exon1	c.C935A	p.S312Y	AGGACTCTGGATT	.	138.0	41.0	127.0	0.0	.	.	Atlas-SNP
PROS1	5627	hgsc.bcm.edu	37	3	93619663	93619663	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A69I-01A-11D-A30V-10	TCGA-BC-A69I-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ce1b736-149a-4b4a-92ca-d02d98cb8671	ca229805-3ddd-41b7-bd5c-3e13e5a1cb8c	.	PROS1	NM_000313	exon7	c.T712C	p.S238P	ACTTTGATTTGAG	.	84.0	7.0	101.0	0.0	.	.	Atlas-SNP
TP53	7157	hgsc.bcm.edu	37	17	7579472	7579472	+	Missense_Mutation	SNP	G	G	C	rs1042522	byfrequency	TCGA-BC-A69I-01A-11D-A30V-10	TCGA-BC-A69I-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ce1b736-149a-4b4a-92ca-d02d98cb8671	ca229805-3ddd-41b7-bd5c-3e13e5a1cb8c	TP53,sinonasal_and_nasal_cavity,lymphoid_neoplasm,-1	TP53	NM_000546	exon4	c.C215G	p.P72R	GCCACGGGGGGAG	.	81.0	11.0	74.0	0.0	G|0.449;C|0.551	.	Atlas-SNP
CNTNAP5	129684	hgsc.bcm.edu	37	2	125320882	125320882	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BC-A69I-01A-11D-A30V-10	TCGA-BC-A69I-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ce1b736-149a-4b4a-92ca-d02d98cb8671	ca229805-3ddd-41b7-bd5c-3e13e5a1cb8c	.	CNTNAP5	NM_130773	exon11	c.G1735T	p.G579C	TACACTGGTGCCA	.	72.0	14.0	91.0	0.0	.	.	Atlas-SNP
LPHN3	23284	hgsc.bcm.edu	37	4	62758659	62758659	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BC-A69I-01A-11D-A30V-10	TCGA-BC-A69I-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ce1b736-149a-4b4a-92ca-d02d98cb8671	ca229805-3ddd-41b7-bd5c-3e13e5a1cb8c	.	LPHN3	NM_015236	exon7	c.G1562T	p.C521F	AGCCATGCCCTGC	.	73.0	4.0	76.0	0.0	.	.	Atlas-SNP
CREBBP	1387	hgsc.bcm.edu	37	16	3808916	3808916	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BC-A69I-01A-11D-A30V-10	TCGA-BC-A69I-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ce1b736-149a-4b4a-92ca-d02d98cb8671	ca229805-3ddd-41b7-bd5c-3e13e5a1cb8c	.	CREBBP	NM_004380	exon17	c.G3308T	p.R1103L	TCCTGTCGATACA	.	144.0	9.0	115.0	0.0	.	.	Atlas-SNP
SLC26A7	115111	hgsc.bcm.edu	37	8	92301473	92301473	+	Silent	SNP	A	A	T	novel		TCGA-BC-A69I-01A-11D-A30V-10	TCGA-BC-A69I-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ce1b736-149a-4b4a-92ca-d02d98cb8671	ca229805-3ddd-41b7-bd5c-3e13e5a1cb8c	.	SLC26A7	NM_134266	exon3	c.A303T	p.T101T	TGCCACAGGTAAT	.	104.0	10.0	119.0	0.0	.	.	Atlas-SNP
SPRR1A	6698	hgsc.bcm.edu	37	1	152957772	152957772	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BC-A69I-01A-11D-A30V-10	TCGA-BC-A69I-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ce1b736-149a-4b4a-92ca-d02d98cb8671	ca229805-3ddd-41b7-bd5c-3e13e5a1cb8c	.	SPRR1A	NM_001199828	exon2	c.A66T	p.K22N	GGTGAAACAACCT	.	126.0	10.0	118.0	0.0	.	.	Atlas-SNP
NKX2-3	159296	hgsc.bcm.edu	37	10	101295226	101295226	+	Silent	SNP	C	C	A	rs10082511		TCGA-BC-A69I-01A-11D-A30V-10	TCGA-BC-A69I-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ce1b736-149a-4b4a-92ca-d02d98cb8671	ca229805-3ddd-41b7-bd5c-3e13e5a1cb8c	.	NKX2-3	NM_145285	exon2	c.C843A	p.A281A	CGCCGCCGCAGCA	.	26.0	4.0	6.0	0.0	.	.	Atlas-SNP
SPEN	23013	hgsc.bcm.edu	37	1	16259420	16259420	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A69I-01A-11D-A30V-10	TCGA-BC-A69I-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ce1b736-149a-4b4a-92ca-d02d98cb8671	ca229805-3ddd-41b7-bd5c-3e13e5a1cb8c	.	SPEN	NM_015001	exon11	c.G6685A	p.E2229K	TCTGGGGAGCCAG	.	168.0	54.0	152.0	0.0	.	.	Atlas-SNP
DMXL1	1657	hgsc.bcm.edu	37	5	118506315	118506315	+	Silent	SNP	A	A	G	rs146673073	byfrequency	TCGA-BC-A69I-01A-11D-A30V-10	TCGA-BC-A69I-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ce1b736-149a-4b4a-92ca-d02d98cb8671	ca229805-3ddd-41b7-bd5c-3e13e5a1cb8c	.	DMXL1	NM_005509	exon24	c.A5829G	p.Q1943Q	GAAGCAATCAAAC	.	124.0	41.0	133.0	0.0	A|1.000;G|0.000	.	Atlas-SNP
IGF2BP2	10644	hgsc.bcm.edu	37	3	185393150	185393150	+	Silent	SNP	G	G	A	novel		TCGA-BC-A69I-01A-11D-A30V-10	TCGA-BC-A69I-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ce1b736-149a-4b4a-92ca-d02d98cb8671	ca229805-3ddd-41b7-bd5c-3e13e5a1cb8c	.	IGF2BP2	NM_001007225	exon9	c.C1005T	p.A335A	AGCACTGGCACAG	.	141.0	46.0	147.0	0.0	.	.	Atlas-SNP
SERAC1	84947	hgsc.bcm.edu	37	6	158579374	158579374	+	Missense_Mutation	SNP	C	C	T	rs115387731	byfrequency	TCGA-BC-A69I-01A-11D-A30V-10	TCGA-BC-A69I-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ce1b736-149a-4b4a-92ca-d02d98cb8671	ca229805-3ddd-41b7-bd5c-3e13e5a1cb8c	.	SERAC1	NM_032861	exon2	c.G22A	p.V8I	AGATGACGCAATA	.	52.0	30.0	81.0	0.0	C|0.999;T|0.001	.	Atlas-SNP
DRD4	1815	hgsc.bcm.edu	37	11	640119	640119	+	Silent	SNP	C	C	T	rs762502		TCGA-BC-A69I-01A-11D-A30V-10	TCGA-BC-A69I-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ce1b736-149a-4b4a-92ca-d02d98cb8671	ca229805-3ddd-41b7-bd5c-3e13e5a1cb8c	.	DRD4	NM_000797	exon3	c.C870T	p.C290C	CCCCTGCGGCCCC	.	6.0	6.0	0.0	0.0	C|0.320;T|0.680	.	Atlas-SNP
MTPAP	55149	hgsc.bcm.edu	37	10	30629287	30629287	+	Silent	SNP	T	T	C	novel		TCGA-BC-A69I-01A-11D-A30V-10	TCGA-BC-A69I-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ce1b736-149a-4b4a-92ca-d02d98cb8671	ca229805-3ddd-41b7-bd5c-3e13e5a1cb8c	.	MTPAP	NM_018109	exon3	c.A423G	p.A141A	TGGAATTGCAGTC	.	106.0	39.0	112.0	0.0	.	.	Atlas-SNP
EEF1A2	1917	hgsc.bcm.edu	37	20	62124514	62124514	+	Silent	SNP	G	G	A	novel		TCGA-BC-A69I-01A-11D-A30V-10	TCGA-BC-A69I-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ce1b736-149a-4b4a-92ca-d02d98cb8671	ca229805-3ddd-41b7-bd5c-3e13e5a1cb8c	.	EEF1A2	NM_001958	exon5	c.C748T	p.L250L	CCTGCAGCGGCAG	.	86.0	28.0	90.0	0.0	.	.	Atlas-SNP
MNDA	4332	hgsc.bcm.edu	37	1	158813106	158813106	+	Silent	SNP	G	G	A	novel		TCGA-BC-A69I-01A-11D-A30V-10	TCGA-BC-A69I-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ce1b736-149a-4b4a-92ca-d02d98cb8671	ca229805-3ddd-41b7-bd5c-3e13e5a1cb8c	.	MNDA	NM_002432	exon3	c.G303A	p.V101V	TCCAGTGAAAAAA	.	481.0	92.0	318.0	0.0	.	.	Atlas-SNP
FBLIM1	54751	hgsc.bcm.edu	37	1	16103690	16103690	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A69I-01A-11D-A30V-10	TCGA-BC-A69I-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ce1b736-149a-4b4a-92ca-d02d98cb8671	ca229805-3ddd-41b7-bd5c-3e13e5a1cb8c	.	FBLIM1	NM_017556	exon8	c.T916C	p.C306R	AGCATCTGTGAAA	.	95.0	44.0	84.0	0.0	.	.	Atlas-SNP
