Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	Algorithm
RANBP10	57610	hgsc.bcm.edu	37	16	67763278	67763279	+	In_Frame_Ins	INS	-	-	GAGGAG	rs141826437	by1000genomes	TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	RANBP10	NM_020850	exon10	c.1257_1258insCTCCTC	p.S419delinsSSS	.	.	570.0	67.0	608.0	0.0	.	.	Atlas-Indel
NIN	51199	hgsc.bcm.edu	37	14	51223238	51223239	+	Frame_Shift_Del	DEL	CA	CA	-	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	CA	CA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	NIN	NM_020921	exon18	c.4510_4511del	p.1504_1504del	.	.	133.0	74.0	111.0	0.0	.	.	Atlas-Indel,Pindel
APLP2	334	hgsc.bcm.edu	37	11	129993505	129993506	+	Splice_Site	INS	-	-	GCT	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	APLP2	NM_001642	exon7	c.923-2->GCT	.	.	.	59.0	21.0	53.0	0.0	.	.	Atlas-Indel,Pindel
FRMD4B	23150	hgsc.bcm.edu	37	3	69230733	69230734	+	In_Frame_Ins	INS	-	-	TGC	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	FRMD4B	NM_015123	exon21	c.2168_2169insGCA	p.T723delinsST	.	.	567.0	234.0	611.0	0.0	.	.	Atlas-Indel,Pindel
CATSPERD	257062	hgsc.bcm.edu	37	19	5745994	5745995	+	Frame_Shift_Del	DEL	TA	TA	-	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	TA	TA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	.	NM_152784	exon9	c.727_728del	p.243_243del	.	.	113.0	52.0	102.0	0.0	.	.	Atlas-Indel,Pindel
SSFA2	6744	hgsc.bcm.edu	37	2	182766837	182766839	+	In_Frame_Del	DEL	TCT	TCT	-	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	TCT	TCT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	SSFA2	NM_001130445	exon8	c.1056_1058del	p.352_353del	.	.	187.0	103.0	150.0	0.0	.	.	Atlas-Indel,Pindel
TWISTNB	221830	hgsc.bcm.edu	37	7	19748446	19748446	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	TWISTNB	NM_001002926	exon1	c.195delC	p.N65fs	.	.	120.0	66.0	110.0	0.0	.	.	Atlas-Indel,Pindel
FBXO44	93611	hgsc.bcm.edu	37	1	11718673	11718674	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	FBXO44	NM_001014765	exon5	c.476_477insG	p.E159fs	.	.	107.0	39.0	102.0	0.0	.	.	Atlas-Indel,Pindel
FAM103A1	83640	hgsc.bcm.edu	37	15	83657861	83657861	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	FAM103A1	NM_031452	exon3	c.90delG	p.L30fs	.	.	381.0	110.0	460.0	0.0	.	.	Atlas-Indel
NEXN	91624	hgsc.bcm.edu	37	1	78407806	78407808	+	In_Frame_Del	DEL	AGA	AGA	-	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	AGA	AGA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	NEXN	NM_144573	exon12	c.1571_1573del	p.524_525del	.	.	374.0	191.0	379.0	0.0	.	.	Atlas-Indel,Pindel
KLHL33	123103	hgsc.bcm.edu	37	14	20897097	20897097	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	.	NM_001109997	exon4	c.1514delC	p.A505fs	.	.	203.0	96.0	200.0	0.0	.	.	Atlas-Indel,Pindel
XPO1	7514	hgsc.bcm.edu	37	2	61722612	61722612	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	XPO1	NM_003400	exon11	c.1026delT	p.N342fs	.	.	148.0	67.0	151.0	0.0	.	.	Atlas-Indel,Pindel
RBM12B	389677	hgsc.bcm.edu	37	8	94745665	94745666	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	RBM12B	NM_203390	exon3	c.2974_2975insT	p.G992fs	.	.	237.0	23.0	171.0	0.0	.	.	Atlas-Indel
SLC40A1	30061	hgsc.bcm.edu	37	2	190428563	190428564	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	SLC40A1	NM_014585	exon7	c.1149_1150insG	p.C383fs	.	.	131.0	24.0	128.0	0.0	.	.	Atlas-Indel,Pindel
BRI3BP	140707	hgsc.bcm.edu	37	12	125509852	125509853	+	In_Frame_Ins	INS	-	-	CCCCAGCAA	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	BRI3BP-91	NM_080626	exon3	c.632_633insCCCCAGCAA	p.G211delinsGPSN	.	.	72.0	15.0	76.0	0	.	.	Pindel,Atlas-Indel
BPTF	2186	hgsc.bcm.edu	37	17	65822381	65822383	+	In_Frame_Del	DEL	GAC	GAC	-	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	GAC	GAC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	BPTF	NM_182641	exon1	c.540_542del	p.180_181del	.	.	168.0	70.0	167.0	0.0	.	.	Atlas-Indel,Pindel
PPP2R5D	5528	hgsc.bcm.edu	37	6	42974287	42974288	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	PPP2R5D	NM_180976	exon3	c.192_193insC	p.P64fs	.	.	77.0	45.0	84.0	0.0	.	.	Atlas-Indel,Pindel
COL10A1	1300	hgsc.bcm.edu	37	6	116441338	116441339	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	COL10A1	NM_000493	exon3	c.1941_1942insA	p.N647fs	.	.	169.0	52.0	172.0	0.0	.	.	Atlas-Indel,Pindel
GSE1	23199	hgsc.bcm.edu	37	16	85690899	85690899	+	Silent	SNP	C	C	T	rs147468139	byfrequency	TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	.	NM_014615	exon8	c.C1329T	p.A443A	GGATGCCGGCCTG	.	65.0	31.0	73.0	0.0	C|1.000;T|0.000	.	Atlas-SNP
MUC4	4585	hgsc.bcm.edu	37	3	195508139	195508139	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	MUC4	NM_018406	exon2	c.G10312A	p.A3438T	GGGTGGCGTGACC	.	177.0	12.0	137.0	0.0	.	.	Atlas-SNP
FLG	2312	hgsc.bcm.edu	37	1	152281491	152281491	+	Silent	SNP	A	A	G	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	FLG	NM_002016	exon3	c.T5871C	p.P1957P	GGACCCAGGGTGT	.	452.0	221.0	446.0	0.0	.	.	Atlas-SNP
ZDHHC11	79844	hgsc.bcm.edu	37	5	837553	837553	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	ZDHHC11	NM_024786	exon6	c.G827C	p.R276P	TCTTTGCGGTTAT	.	482.0	57.0	652.0	0.0	.	.	Atlas-SNP
POMT1	10585	hgsc.bcm.edu	37	9	134398493	134398493	+	Silent	SNP	G	G	A	rs147143094	byfrequency	TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	POMT1	NM_007171	exon20	c.G2244A	p.X748X	ACACTAGAACAAG	.	52.0	39.0	58.0	0.0	G|0.999;A|0.001	.	Atlas-SNP
MARVELD3	91862	hgsc.bcm.edu	37	16	71660242	71660242	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	MARVELD3	NM_001017967	exon1	c.G110A	p.R37Q	GGGACCGACCCGG	.	28.0	15.0	24.0	0.0	.	.	Atlas-SNP
KIAA1549	57670	hgsc.bcm.edu	37	7	138602695	138602695	+	Silent	SNP	C	C	T	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	KIAA1549	NM_020910	exon2	c.G1677A	p.S559S	GATGACCGAGAAA	.	52.0	34.0	63.0	0.0	.	.	Atlas-SNP
ATR	545	hgsc.bcm.edu	37	3	142232392	142232392	+	Missense_Mutation	SNP	T	T	C	rs200070057		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	ATR	NM_001184	exon26	c.A4592G	p.H1531R	AGAATATGTGGAA	.	330.0	169.0	348.0	1.0	T|0.999;C|0.000	.	Atlas-SNP
CCDC88B	283234	hgsc.bcm.edu	37	11	64108124	64108124	+	Missense_Mutation	SNP	G	G	C	rs147780757	byfrequency	TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	CCDC88B	NM_032251	exon2	c.G106C	p.G36R	TCGGAGGGGGAAG	.	94.0	54.0	62.0	0.0	G|0.996;C|0.004	.	Atlas-SNP
GKAP1	80318	hgsc.bcm.edu	37	9	86421341	86421341	+	Missense_Mutation	SNP	G	G	A	rs145600190		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	GKAP1	NM_025211	exon3	c.C92T	p.P31L	TTTCCAGGTTCAG	.	133.0	108.0	160.0	0.0	G|1.000;A|0.000	.	Atlas-SNP
ZNF236	7776	hgsc.bcm.edu	37	18	74616372	74616372	+	Missense_Mutation	SNP	A	A	C	rs189873475	byfrequency	TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	ZNF236	NM_007345	exon12	c.A1925C	p.Q642P	TTTTCCAAAGCTA	.	148.0	86.0	177.0	0.0	A|0.997;C|0.003	.	Atlas-SNP
LECT1	11061	hgsc.bcm.edu	37	13	53298212	53298212	+	Missense_Mutation	SNP	T	T	G	rs140734619	byfrequency	TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	LECT1	NM_007015	exon4	c.A388C	p.K130Q	AGCACTTCTCTCC	.	87.0	49.0	87.0	0.0	T|0.999;G|0.001	.	Atlas-SNP
MUC4	4585	hgsc.bcm.edu	37	3	195513398	195513398	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	MUC4	NM_018406	exon2	c.G5053A	p.G1685S	AAAGGCCGGTGAC	.	380.0	16.0	414.0	0.0	.	.	Atlas-SNP
PUS1	80324	hgsc.bcm.edu	37	12	132426506	132426506	+	Missense_Mutation	SNP	C	C	T	rs149378338	byfrequency	TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	PUS1	NM_025215	exon5	c.C1214T	p.T405M	CTCTCACGGCAGG	.	77.0	28.0	96.0	0.0	C|0.998;T|0.002	.	Atlas-SNP
TFEC	22797	hgsc.bcm.edu	37	7	115580893	115580893	+	Silent	SNP	G	G	A	rs34298819	byfrequency	TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	TFEC	NM_012252	exon8	c.C756T	p.S252S	AGGATGGCTCTGC	.	140.0	104.0	207.0	0.0	G|0.988;A|0.012	.	Atlas-SNP
OBSCN	84033	hgsc.bcm.edu	37	1	228548360	228548360	+	Silent	SNP	G	G	A	rs141233508	by1000genomes	TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	OBSCN	NM_052843	exon81	c.G19767A	p.E6589E	CACAGAGCTTTCC	.	34.0	14.0	40.0	0.0	G|0.997;A|0.003	.	Atlas-SNP
MRPS2	51116	hgsc.bcm.edu	37	9	138395624	138395624	+	Missense_Mutation	SNP	C	C	T	rs34149047	byfrequency	TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	MRPS2	NM_016034	exon4	c.C536T	p.A179V	CCAACGCGCGCCT	.	41.0	34.0	45.0	0.0	C|0.990;T|0.010	.	Atlas-SNP
HIST1H3E	8353	hgsc.bcm.edu	37	6	26225403	26225403	+	Silent	SNP	G	G	A	rs138589598	byfrequency	TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	HIST1H3E	NM_003532	exon1	c.G21A	p.T7T	GCAGACGGCTCGT	.	222.0	52.0	241.0	0.0	G|0.999;A|0.001	.	Atlas-SNP
ZFAND4	93550	hgsc.bcm.edu	37	10	46121398	46121398	+	Splice_Site	SNP	C	C	A	rs138611228	byfrequency	TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	.	NM_001128324	exon8	c.1872+1G>T	.	TACTGACCAAAAA	.	83.0	29.0	91.0	0.0	C|0.998;A|0.002	.	Atlas-SNP
AKAP6	9472	hgsc.bcm.edu	37	14	33015531	33015531	+	Missense_Mutation	SNP	A	A	G	rs35210906	byfrequency	TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	AKAP6	NM_004274	exon4	c.A1672G	p.N558D	CCTTGTAATCAGA	.	129.0	58.0	122.0	0.0	A|0.994;G|0.006	.	Atlas-SNP
PRPS1L1	221823	hgsc.bcm.edu	37	7	18067187	18067187	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	PRPS1L1	NM_175886	exon1	c.G219T	p.M73I	ATTAATCATGATC	.	348.0	149.0	308.0	0.0	.	.	Atlas-SNP
LRRC40	55631	hgsc.bcm.edu	37	1	70621457	70621457	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	LRRC40	NM_017768	exon11	c.C1243G	p.P415A	CATCAGGAATCAA	.	176.0	42.0	206.0	0.0	.	.	Atlas-SNP
TAF1C	9013	hgsc.bcm.edu	37	16	84216862	84216862	+	Silent	SNP	C	C	T	rs4150137	byfrequency	TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	TAF1C	NM_001243156	exon5	c.G396A	p.L132L	TCCCTCCAGCTTG	.	56.0	21.0	72.0	0.0	C|0.997;T|0.003	.	Atlas-SNP
SERINC4	619189	hgsc.bcm.edu	37	15	44089128	44089128	+	Silent	SNP	G	G	A	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	SERINC4	NM_001258031	exon7	c.C855T	p.R285R	GCCAGAGCGGGGT	.	132.0	75.0	169.0	0.0	.	.	Atlas-SNP
PFKP	5214	hgsc.bcm.edu	37	10	3172115	3172115	+	Silent	SNP	C	C	T	rs11542778	byfrequency	TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	PFKP	NM_002627	exon17	c.C1788T	p.L596L	GGGGCTCGCGGCC	.	69.0	41.0	67.0	0.0	C|0.994;T|0.006	.	Atlas-SNP
PLCB3	5331	hgsc.bcm.edu	37	11	64033621	64033621	+	Silent	SNP	C	C	T	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	PLCB3	NM_000932	exon27	c.C3213T	p.V1071V	GGAGGTCGTCCTT	.	76.0	18.0	74.0	0.0	.	.	Atlas-SNP
IL4I1	259307	hgsc.bcm.edu	37	19	50398373	50398373	+	Missense_Mutation	SNP	G	G	A	rs147320311	byfrequency	TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	IL4I1	NM_172374	exon6	c.C383T	p.T128M	CAGCCCGTGTTCT	.	87.0	49.0	67.0	0.0	G|0.997;A|0.003	.	Atlas-SNP
FABP4	2167	hgsc.bcm.edu	37	8	82391720	82391720	+	Missense_Mutation	SNP	C	C	G	rs148632765	byfrequency	TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	FABP4	NM_001442	exon3	c.G277C	p.V93L	CATGTACCAGGAC	.	549.0	157.0	395.0	0.0	C|0.999;G|0.001	.	Atlas-SNP
PTPRM	5797	hgsc.bcm.edu	37	18	8376069	8376069	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	PTPRM	NM_001105244	exon25	c.T3197C	p.I1066T	GAGAGATCAGACA	.	58.0	28.0	58.0	0.0	.	.	Atlas-SNP
C5orf55	116349	hgsc.bcm.edu	37	5	442702	442702	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	.	NM_138464	exon1	c.G236A	p.R79H	TTCCCACGAGGGT	.	50.0	17.0	83.0	0.0	.	.	Atlas-SNP
ADAMTSL1	92949	hgsc.bcm.edu	37	9	18795437	18795437	+	Silent	SNP	A	A	C	rs201274040	alternate_allele	TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	ADAMTSL1	NM_001040272	exon20	c.A3720C	p.P1240P	GGCACCAGTGGAA	.	107.0	45.0	134.0	0.0	A|0.999;T|0.000	.	Atlas-SNP
ESYT2	57488	hgsc.bcm.edu	37	7	158590695	158590695	+	Missense_Mutation	SNP	C	C	T	rs145150831	alternate_allele	TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	ESYT2	NM_020728	exon3	c.G589A	p.V197M	CCCGCACGGCTGG	.	106.0	68.0	189.0	0.0	C|1.000;G|0.000	.	Atlas-SNP
MED27	9442	hgsc.bcm.edu	37	9	134735980	134735980	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	MED27	NM_004269	exon8	c.C881T	p.P294L	CATGTCGGGGGAA	.	141.0	14.0	125.0	0.0	.	.	Atlas-SNP
EML6	400954	hgsc.bcm.edu	37	2	55122149	55122149	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	.	NM_001039753	exon19	c.C2840T	p.S947L	CATTGTCGACTAG	.	115.0	48.0	96.0	0.0	.	.	Atlas-SNP
OTOF	9381	hgsc.bcm.edu	37	2	26690001	26690001	+	Missense_Mutation	SNP	G	G	A	rs148506633		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	OTOF	NM_194248	exon35	c.C4328T	p.S1443F	TCGGTGGAGCCAT	.	36.0	28.0	31.0	0.0	G|1.000;A|0.000	.	Atlas-SNP
PKHD1	5314	hgsc.bcm.edu	37	6	51612837	51612837	+	Missense_Mutation	SNP	C	C	T	rs35445653	byfrequency	TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	PKHD1	NM_170724	exon58	c.G9577A	p.V3193I	TTTTGACGGAATT	.	152.0	8.0	183.0	0.0	C|0.985;T|0.015	.	Atlas-SNP
BCS1L	617	hgsc.bcm.edu	37	2	219527689	219527689	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	BCS1L	NM_001257343	exon8	c.C973T	p.R325C	GAGGCCCGCATCG	.	161.0	8.0	111.0	0.0	.	.	Atlas-SNP
RUVBL2	10856	hgsc.bcm.edu	37	19	49510363	49510363	+	Silent	SNP	G	G	A	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	RUVBL2	NM_006666	exon5	c.G354A	p.A118A	CGAGGCGCTGACG	.	46.0	21.0	33.0	0.0	.	.	Atlas-SNP
OXA1L	5018	hgsc.bcm.edu	37	14	23235948	23235948	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	OXA1L	NM_005015	exon1	c.T218C	p.L73P	AGCTTCTGCGCTT	.	65.0	31.0	68.0	0.0	.	.	Atlas-SNP
ZNF208	7757	hgsc.bcm.edu	37	19	22154829	22154829	+	Missense_Mutation	SNP	A	A	T	rs181871198	byfrequency	TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	ZNF208	NM_007153	exon4	c.T3007A	p.C1003S	CTTCACATTTGTA	.	106.0	40.0	119.0	0.0	A|0.998;T|0.002	.	Atlas-SNP
C17orf53	78995	hgsc.bcm.edu	37	17	42232026	42232026	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	C17orf53	NM_024032	exon6	c.C1555G	p.P519A	AAGGACCCCACGG	.	124.0	56.0	114.0	0.0	.	.	Atlas-SNP
ASAP1	50807	hgsc.bcm.edu	37	8	131130830	131130830	+	Silent	SNP	A	A	G	rs148934825	byfrequency	TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	ASAP1	NM_018482	exon19	c.T1699C	p.L567L	CAAGCAATTCATT	.	441.0	335.0	261.0	1.0	A|0.996;G|0.004	.	Atlas-SNP
MUC17	140453	hgsc.bcm.edu	37	7	100678932	100678932	+	Missense_Mutation	SNP	A	A	G	rs114941002	byfrequency	TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	MUC17	NM_001040105	exon3	c.A4235G	p.E1412G	GTTCTGAGGCTAG	.	278.0	24.0	155.0	0.0	A|0.999;G|0.001	.	Atlas-SNP
MUC17	140453	hgsc.bcm.edu	37	7	100681951	100681951	+	Silent	SNP	C	C	A	rs141774606		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	MUC17	NM_001040105	exon3	c.C7254A	p.S2418S	CCATTCCACAACT	.	284.0	12.0	158.0	0.0	C|1.000;A|0.000	.	Atlas-SNP
ATF6	22926	hgsc.bcm.edu	37	1	161771986	161771986	+	Missense_Mutation	SNP	C	C	T	rs138997959	byfrequency	TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	ATF6	NM_007348	exon7	c.C833T	p.A278V	CTTCAGCGAATAG	.	205.0	94.0	183.0	0.0	C|0.998;T|0.002	.	Atlas-SNP
CHRNB4	1143	hgsc.bcm.edu	37	15	78921546	78921546	+	Silent	SNP	C	C	A	rs78698827	bycluster;byfrequency	TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	CHRNB4	NM_000750	exon5	c.G1101T	p.V367V	CTTGGTCACGCAT	.	63.0	40.0	62.0	0.0	C|0.999;A|0.001	.	Atlas-SNP
RNF146	81847	hgsc.bcm.edu	37	6	127608228	127608228	+	Missense_Mutation	SNP	G	G	T	rs146810798	byfrequency	TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	RNF146	NM_001242850	exon3	c.G470T	p.R157I	ATAGGAGAAATGA	.	118.0	59.0	113.0	0.0	G|1.000;T|0.000	.	Atlas-SNP
SLC29A4	222962	hgsc.bcm.edu	37	7	5330765	5330765	+	Silent	SNP	C	C	T	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	SLC29A4	NM_153247	exon4	c.C312T	p.I104I	CTCCATCGTGTTT	.	88.0	49.0	85.0	0.0	.	.	Atlas-SNP
ACACB	32	hgsc.bcm.edu	37	12	109689895	109689895	+	Silent	SNP	G	G	A	rs140927923		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	ACACB	NM_001093	exon41	c.G5835A	p.L1945L	GAGGCTGGGCCAG	.	80.0	45.0	84.0	0.0	G|1.000;A|0.000	.	Atlas-SNP
MUC16	94025	hgsc.bcm.edu	37	19	8996340	8996340	+	Silent	SNP	G	G	A	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	MUC16	NM_024690	exon61	c.C41232T	p.N13744N	GCTGTCGTTGTCC	.	117.0	63.0	135.0	0.0	.	.	Atlas-SNP
UBA7	7318	hgsc.bcm.edu	37	3	49846459	49846459	+	Missense_Mutation	SNP	G	G	T	rs146224810		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	UBA7	NM_003335	exon18	c.C2297A	p.A766D	ATGGGGGCCATCT	.	144.0	65.0	155.0	0.0	G|1.000;T|0.000	.	Atlas-SNP
RHNO1	83695	hgsc.bcm.edu	37	12	2994578	2994578	+	Missense_Mutation	SNP	C	C	G	rs138375075	byfrequency	TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	.	NM_001257098	exon2	c.C46G	p.L16V	GCCCCGCTGCTGT	.	160.0	86.0	171.0	0.0	C|0.995;G|0.005	.	Atlas-SNP
PKHD1L1	93035	hgsc.bcm.edu	37	8	110499005	110499005	+	Missense_Mutation	SNP	C	C	T	rs189682035		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	PKHD1L1	NM_177531	exon59	c.C9835T	p.R3279C	GGAGCACGCGTAC	.	495.0	368.0	283.0	0.0	C|0.997;T|0.003	.	Atlas-SNP
AFAP1L2	84632	hgsc.bcm.edu	37	10	116060005	116060005	+	Silent	SNP	G	G	C	rs144048981	byfrequency	TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	AFAP1L2	NM_032550	exon15	c.C1905G	p.T635T	AGGTGGGGTGGCC	.	119.0	62.0	117.0	0.0	G|0.997;C|0.003	.	Atlas-SNP
MUC17	140453	hgsc.bcm.edu	37	7	100678977	100678977	+	Missense_Mutation	SNP	G	G	T	rs148743807	byfrequency	TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	MUC17	NM_001040105	exon3	c.G4280T	p.G1427V	CCCCTGGGACCAC	.	240.0	53.0	146.0	0.0	G|0.994;T|0.006	.	Atlas-SNP
SPATA31D1	389763	hgsc.bcm.edu	37	9	84605716	84605716	+	Missense_Mutation	SNP	C	C	T	rs200055434		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	.	NM_001001670	exon4	c.C331T	p.R111W	AGTCCTCGGGGCC	.	146.0	119.0	132.0	0.0	.	.	Atlas-SNP
SYNGR3	9143	hgsc.bcm.edu	37	16	2042650	2042650	+	Missense_Mutation	SNP	C	C	A	rs140958780	byfrequency	TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	SYNGR3	NM_004209	exon3	c.C351A	p.F117L	GTCCTTCCTGTGG	.	36.0	16.0	36.0	0.0	C|0.997;A|0.003	.	Atlas-SNP
HK2	3099	hgsc.bcm.edu	37	2	75105840	75105840	+	Missense_Mutation	SNP	C	C	T	rs61748096	byfrequency	TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	HK2	NM_000189	exon9	c.C1057T	p.R353C	AAGGCCCGTGAGG	.	244.0	101.0	202.0	0.0	C|0.998;T|0.002	.	Atlas-SNP
KRTAP10-3	386682	hgsc.bcm.edu	37	21	45977945	45977945	+	Silent	SNP	C	C	T	rs13047815	byfrequency	TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	KRTAP10-3	NM_198696	exon1	c.G654A	p.K218K	GCTGGACTTCTGG	.	123.0	64.0	126.0	0.0	C|0.984;T|0.016	.	Atlas-SNP
PTAR1	375743	hgsc.bcm.edu	37	9	72365864	72365864	+	Missense_Mutation	SNP	T	T	C	rs200966061		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	PTAR1	NM_001099666	exon2	c.A89G	p.D30G	ATTTCATCTCTTA	.	54.0	38.0	57.0	0.0	T|0.999;C|0.000	.	Atlas-SNP
CYP19A1	1588	hgsc.bcm.edu	37	15	51520128	51520128	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	CYP19A1	NM_031226	exon5	c.C299A	p.S100Y	CTTGAGGACCTGA	.	230.0	67.0	266.0	0.0	.	.	Atlas-SNP
KRT36	8689	hgsc.bcm.edu	37	17	39643982	39643982	+	Missense_Mutation	SNP	C	C	T	rs186616246		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	KRT36	NM_003771	exon4	c.G707A	p.S236N	AGTACACTGACTT	.	62.0	25.0	62.0	0.0	C|0.999;T|0.001	.	Atlas-SNP
MUC17	140453	hgsc.bcm.edu	37	7	100678935	100678935	+	Missense_Mutation	SNP	C	C	T	rs116960680	byfrequency	TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	MUC17	NM_001040105	exon3	c.C4238T	p.A1413V	CTGAGGCTAGCAC	.	274.0	24.0	149.0	0.0	C|0.999;T|0.001	.	Atlas-SNP
AOX1	316	hgsc.bcm.edu	37	2	201476192	201476192	+	Silent	SNP	A	A	T	rs145418309	byfrequency	TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	AOX1	NM_001159	exon13	c.A1239T	p.S413S	GGTCTCAGTGAAC	.	136.0	89.0	91.0	0.0	A|1.000;T|0.000	.	Atlas-SNP
CUL7	9820	hgsc.bcm.edu	37	6	43020111	43020111	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	CUL7	NM_001168370	exon2	c.A572C	p.H191P	ACAGTGTGAAGTA	.	75.0	65.0	76.0	0.0	.	.	Atlas-SNP
XIRP1	165904	hgsc.bcm.edu	37	3	39227506	39227506	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	XIRP1	NM_194293	exon2	c.C3431A	p.T1144N	TGAGCGGTGTAGA	.	92.0	32.0	94.0	0.0	.	.	Atlas-SNP
LPXN	9404	hgsc.bcm.edu	37	11	58318543	58318543	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	LPXN	NM_001143995	exon5	c.G496A	p.G166R	CCTTCCCAGCAAT	.	79.0	42.0	74.0	0.0	.	.	Atlas-SNP
HERC1	8925	hgsc.bcm.edu	37	15	64041905	64041905	+	Missense_Mutation	SNP	G	G	C	rs137926425	byfrequency	TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	HERC1	NM_003922	exon9	c.C1988G	p.A663G	GTGGCAGCCAGTT	.	191.0	75.0	207.0	0.0	G|0.996;C|0.004	.	Atlas-SNP
SLFN13	146857	hgsc.bcm.edu	37	17	33772246	33772246	+	Missense_Mutation	SNP	C	C	T	rs115889903	byfrequency	TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	SLFN13	NM_144682	exon3	c.G454A	p.D152N	GGAAATCGAATGC	.	95.0	61.0	94.0	0.0	C|0.995;T|0.005	.	Atlas-SNP
ITIH2	3698	hgsc.bcm.edu	37	10	7773950	7773950	+	Silent	SNP	G	G	C	rs150260189	alternate_allele	TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	ITIH2	NM_002216	exon13	c.G1638C	p.T546T	TATCACGGCGACT	.	98.0	49.0	124.0	0.0	G|1.000;A|0.000	.	Atlas-SNP
FGD1	2245	hgsc.bcm.edu	37	X	54476707	54476707	+	Silent	SNP	G	G	A	rs144902747		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	FGD1	NM_004463	exon13	c.C2043T	p.V681V	TACCTGGACCCAG	.	300.0	148.0	154.0	0.0	G|1.000;A|0.000	.	Atlas-SNP
ZNF229	7772	hgsc.bcm.edu	37	19	44933929	44933929	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	ZNF229	NM_014518	exon6	c.C1027T	p.P343S	CCACAGGGGCTCT	.	68.0	29.0	90.0	0.0	.	.	Atlas-SNP
KCNQ3	3786	hgsc.bcm.edu	37	8	133142127	133142127	+	Silent	SNP	A	A	C	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	KCNQ3	NM_004519	exon15	c.T2001G	p.A667A	TGCTTCAGCTGGC	.	400.0	113.0	386.0	0.0	.	.	Atlas-SNP
AAR2	25980	hgsc.bcm.edu	37	20	34828456	34828456	+	Silent	SNP	A	A	G	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	.	NM_001271874	exon2	c.A666G	p.P222P	CACGCCAGCTGAG	.	78.0	50.0	74.0	0.0	.	.	Atlas-SNP
AGA	175	hgsc.bcm.edu	37	4	178355580	178355580	+	Silent	SNP	G	G	A	rs145465919	byfrequency	TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	AGA	NM_000027	exon7	c.C762T	p.A254A	GGCTGCGGCTGCC	.	340.0	164.0	337.0	1.0	G|0.999;A|0.001	.	Atlas-SNP
DIABLO	56616	hgsc.bcm.edu	37	12	122710514	122710514	+	Missense_Mutation	SNP	G	G	T	rs76582402	by1000genomes;alternate_allele	TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	DIABLO	NM_138929	exon2	c.C48A	p.F16L	GTACCTGAAGAAT	.	37.0	14.0	30.0	0.0	G|0.999;C|0.001	.	Atlas-SNP
LRP1B	53353	hgsc.bcm.edu	37	2	141215101	141215101	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	LRP1B	NM_018557	exon61	c.C9745T	p.L3249F	GTGAGAGTCTGTC	.	229.0	70.0	206.0	0.0	.	.	Atlas-SNP
DSG2	1829	hgsc.bcm.edu	37	18	29099850	29099850	+	Missense_Mutation	SNP	G	G	A	rs121913013		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	DSG2	NM_001943	exon3	c.G166A	p.V56M	GCCCCCGTGGCTC	.	135.0	70.0	150.0	0.0	G|0.999;A|0.001	.	Atlas-SNP
PATL1	219988	hgsc.bcm.edu	37	11	59423150	59423150	+	Missense_Mutation	SNP	G	G	A	rs183877144	byfrequency	TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	PATL1	NM_152716	exon8	c.C877T	p.L293F	CAGCAAGTGGACT	.	85.0	43.0	110.0	0.0	G|0.997;A|0.003	.	Atlas-SNP
SH3BP4	23677	hgsc.bcm.edu	37	2	235950759	235950759	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	SH3BP4	NM_014521	exon4	c.T1346C	p.M449T	CCTGTATGTACGT	.	79.0	52.0	72.0	0.0	.	.	Atlas-SNP
MAGEC1	9947	hgsc.bcm.edu	37	X	140994276	140994276	+	Silent	SNP	A	A	G	rs58707730		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	MAGEC1	NM_005462	exon4	c.A1086G	p.Q362Q	TGCTCAAAGTACT	.	663.0	38.0	381.0	0.0	A|0.997;G|0.003	.	Atlas-SNP
ATP7B	540	hgsc.bcm.edu	37	13	52548874	52548874	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	ATP7B	NM_001243182	exon2	c.T482C	p.I161T	CCTTCAATGGAGC	.	51.0	23.0	72.0	0.0	.	.	Atlas-SNP
C5orf42	65250	hgsc.bcm.edu	37	5	37187928	37187928	+	Silent	SNP	A	A	G	rs145520487	byfrequency	TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	C5orf42	NM_023073	exon22	c.T3828C	p.L1276L	AGCACAAAGTTCT	.	370.0	177.0	422.0	0.0	A|0.999;G|0.001	.	Atlas-SNP
DGKD	8527	hgsc.bcm.edu	37	2	234346085	234346085	+	Silent	SNP	A	A	T	rs182015878		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	DGKD	NM_152879	exon8	c.A882T	p.S294S	AGTGTCAGTCATC	.	92.0	33.0	84.0	0.0	A|0.999;T|0.000	.	Atlas-SNP
IQGAP3	128239	hgsc.bcm.edu	37	1	156532438	156532438	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	IQGAP3	NM_178229	exon9	c.A818G	p.D273G	TAGATGTCCTGGC	.	140.0	65.0	196.0	0.0	.	.	Atlas-SNP
IRF6	3664	hgsc.bcm.edu	37	1	209964141	209964141	+	Silent	SNP	A	A	G	rs41303263	byfrequency	TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	IRF6	NM_006147	exon7	c.T759C	p.Y253Y	GTCCCCATAGAAG	.	45.0	18.0	59.0	0.0	A|0.998;G|0.002	.	Atlas-SNP
ZDHHC6	64429	hgsc.bcm.edu	37	10	114202041	114202041	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	ZDHHC6	NM_022494	exon4	c.C428T	p.S143L	GTGAACGAAGCAT	.	151.0	74.0	144.0	0.0	.	.	Atlas-SNP
ADAD2	161931	hgsc.bcm.edu	37	16	84228909	84228909	+	Silent	SNP	G	G	C	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	ADAD2	NM_139174	exon6	c.G987C	p.P329P	GATCCCGCGTGCC	.	43.0	26.0	21.0	0.0	.	.	Atlas-SNP
COX4I1	1327	hgsc.bcm.edu	37	16	85838634	85838634	+	Silent	SNP	G	G	C	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	COX4I1	NM_001861	exon3	c.G165C	p.L55L	GCACCTGTCTGCC	.	122.0	42.0	116.0	0.0	.	.	Atlas-SNP
ORAI2	80228	hgsc.bcm.edu	37	7	102087238	102087238	+	Silent	SNP	C	C	T	rs142966165	byfrequency	TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	ORAI2	NM_032831	exon3	c.C504T	p.L168L	GCTGCTCTGCTGG	.	58.0	41.0	100.0	0.0	C|0.997;T|0.003	.	Atlas-SNP
AIG1	51390	hgsc.bcm.edu	37	6	143486261	143486261	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	AIG1	NM_016108	exon3	c.G340C	p.E114Q	GACAGAGAGATGA	.	307.0	144.0	397.0	0.0	.	.	Atlas-SNP
MMEL1	79258	hgsc.bcm.edu	37	1	2523412	2523412	+	Missense_Mutation	SNP	C	C	T	rs144423087	byfrequency	TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	MMEL1	NM_033467	exon22	c.G2122A	p.D708N	TGAGATCCAGGCC	.	260.0	140.0	219.0	0.0	C|0.999;T|0.001	.	Atlas-SNP
FCRL5	83416	hgsc.bcm.edu	37	1	157488557	157488557	+	Silent	SNP	C	C	G	rs143818028	alternate_allele	TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	FCRL5	NM_031281	exon14	c.G2676C	p.S892S	GGAGTCCGAGTCT	.	177.0	96.0	186.0	0.0	C|1.000;T|0.000	.	Atlas-SNP
C7orf10	79783	hgsc.bcm.edu	37	7	40900015	40900015	+	Silent	SNP	C	C	T	rs34330194	byfrequency	TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	C7orf10	NM_001193311	exon15	c.C1353T	p.Y451Y	GAGATACGATGAC	.	122.0	47.0	104.0	0.0	C|0.995;T|0.005	.	Atlas-SNP
MTFR1	9650	hgsc.bcm.edu	37	8	66617109	66617109	+	Silent	SNP	C	C	G	rs148450715		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	MTFR1	NM_014637	exon5	c.C462G	p.L154L	TGCTCTCAGAGCT	.	247.0	162.0	158.0	0.0	C|1.000;G|0.000	.	Atlas-SNP
MUC13	56667	hgsc.bcm.edu	37	3	124627149	124627149	+	Missense_Mutation	SNP	C	C	T	rs75643991		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	MUC13	NM_033049	exon11	c.G1381A	p.E461K	AGTCTTCGTCAAT	.	383.0	173.0	461.0	1.0	C|1.000;T|0.000	.	Atlas-SNP
ATP9A	10079	hgsc.bcm.edu	37	20	50307296	50307296	+	Silent	SNP	G	G	A	rs45470394	byfrequency	TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	ATP9A	NM_006045	exon8	c.C705T	p.F235F	TCCCACGAAGTTG	.	127.0	54.0	98.0	0.0	G|0.995;A|0.005	.	Atlas-SNP
MUC17	140453	hgsc.bcm.edu	37	7	100677902	100677902	+	Missense_Mutation	SNP	A	A	C	rs140987508	byfrequency	TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	MUC17	NM_001040105	exon3	c.A3205C	p.T1069P	GCTGACACCAGCA	.	600.0	53.0	155.0	0.0	A|1.000;C|0.000	.	Atlas-SNP
NFASC	23114	hgsc.bcm.edu	37	1	204978776	204978776	+	Silent	SNP	C	C	T	rs150655555	byfrequency;alternate_allele	TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	NFASC	NM_001005388	exon28	c.C3381T	p.I1127I	GCTCATCGTCTGT	.	53.0	33.0	49.0	0.0	C|0.999;A|0.001	.	Atlas-SNP
PEAK1	0	hgsc.bcm.edu	37	15	77473570	77473570	+	Silent	SNP	G	G	A	rs140531796		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	.	NM_024776	exon5	c.C699T	p.G233G	CTCCTCGCCACTG	.	78.0	27.0	100.0	0.0	G|0.999;A|0.001	.	Atlas-SNP
RSF1	51773	hgsc.bcm.edu	37	11	77413429	77413429	+	Missense_Mutation	SNP	T	T	C	rs149599829	byfrequency	TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	RSF1	NM_016578	exon6	c.A845G	p.D282G	TTTTCATCTTCTT	.	296.0	146.0	334.0	1.0	T|0.999;C|0.001	.	Atlas-SNP
ZNF721	170960	hgsc.bcm.edu	37	4	436113	436113	+	Nonsense_Mutation	SNP	G	G	A	rs201611004		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	ZNF721	NM_133474	exon3	c.A2143T	p.R715X	TCCTATGTGTAGT	.	253.0	101.0	305.0	0.0	.	.	Atlas-SNP
BZRAP1	9256	hgsc.bcm.edu	37	17	56385030	56385030	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	BZRAP1	NM_004758	exon24	c.C4925T	p.S1642L	TTGGGCGACATTG	.	193.0	66.0	196.0	0.0	.	.	Atlas-SNP
MYSM1	114803	hgsc.bcm.edu	37	1	59137623	59137623	+	Missense_Mutation	SNP	G	G	A	rs201737420		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	MYSM1	NM_001085487	exon12	c.C1580T	p.S527F	TCAGCAGAGAGAT	.	282.0	151.0	328.0	0.0	.	.	Atlas-SNP
OBSL1	23363	hgsc.bcm.edu	37	2	220420931	220420931	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	OBSL1	NM_001173431	exon14	c.C4420T	p.R1474X	CCACTCGGCCTGT	.	137.0	84.0	100.0	0.0	.	.	Atlas-SNP
NAGS	162417	hgsc.bcm.edu	37	17	42084762	42084762	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	NAGS	NM_153006	exon5	c.C1168T	p.R390C	CAGGGCCGTCTAG	.	45.0	13.0	37.0	0.0	.	.	Atlas-SNP
NXF5	55998	hgsc.bcm.edu	37	X	101096930	101096930	+	Missense_Mutation	SNP	T	T	C	rs55756985	byfrequency	TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	NXF5	NM_032946	exon4	c.A67G	p.K23E	CATACTTTATCCC	.	609.0	254.0	385.0	0.0	T|0.981;C|0.019	.	Atlas-SNP
ZNF213	7760	hgsc.bcm.edu	37	16	3191132	3191132	+	Silent	SNP	G	G	T	rs150219616	byfrequency	TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	ZNF213	NM_004220	exon6	c.G1164T	p.L388L	CTACCTGGCCGAC	.	70.0	29.0	96.0	0.0	G|0.997;T|0.003	.	Atlas-SNP
PARG	8505	hgsc.bcm.edu	37	10	51087846	51087846	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	PARG	NM_003631	exon9	c.C1861T	p.H621Y	TGGAATGATTCAT	.	501.0	201.0	508.0	1.0	.	.	Atlas-SNP
MICAL2	9645	hgsc.bcm.edu	37	11	12241818	12241818	+	Missense_Mutation	SNP	G	G	A	rs144642828	byfrequency	TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	MICAL2	NM_014632	exon9	c.G1019A	p.R340Q	ATGCCCGGGAAGC	.	120.0	42.0	153.0	0.0	G|1.000;A|0.000	.	Atlas-SNP
JUP	3728	hgsc.bcm.edu	37	17	39919367	39919367	+	Silent	SNP	G	G	A	rs77375949		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	JUP	NM_021991	exon8	c.C1365T	p.A455A	GCAGACGGCAGGC	.	115.0	45.0	80.0	0.0	G|0.999;A|0.001	.	Atlas-SNP
MYH3	4621	hgsc.bcm.edu	37	17	10541680	10541680	+	Missense_Mutation	SNP	G	G	A	rs12941197	byfrequency	TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	MYH3	NM_002470	exon27	c.C3409T	p.R1137C	CGCTGCGCTGTTT	.	29.0	20.0	40.0	0.0	G|0.997;A|0.003	.	Atlas-SNP
SYNE1	23345	hgsc.bcm.edu	37	6	152501416	152501416	+	Missense_Mutation	SNP	C	C	T	rs138787771	byfrequency	TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	SYNE1	NM_182961	exon129	c.G23315A	p.R7772Q	TGCTGCCGCCTTA	.	258.0	113.0	272.0	1.0	C|0.996;T|0.004	.	Atlas-SNP
MAGEC1	9947	hgsc.bcm.edu	37	X	140994270	140994270	+	Missense_Mutation	SNP	T	T	A	rs59612804		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	MAGEC1	NM_005462	exon4	c.T1080A	p.S360R	TGAGAGTGCTCAA	.	637.0	26.0	369.0	0.0	.	.	Atlas-SNP
ZCCHC4	29063	hgsc.bcm.edu	37	4	25315754	25315754	+	Missense_Mutation	SNP	G	G	C	rs144236014	byfrequency	TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	ZCCHC4	NM_024936	exon2	c.G214C	p.D72H	AGAAAAGACTGTA	.	172.0	85.0	219.0	0.0	G|0.985;C|0.015	.	Atlas-SNP
NPAP1	23742	hgsc.bcm.edu	37	15	24921331	24921331	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	.	NM_018958	exon1	c.C317T	p.P106L	ACCCCCCGAGGTT	.	36.0	13.0	33.0	0.0	.	.	Atlas-SNP
FAM184B	27146	hgsc.bcm.edu	37	4	17711208	17711208	+	Silent	SNP	C	C	A	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	FAM184B	NM_015688	exon2	c.G201T	p.R67R	CGCTTCCCGCAGC	.	75.0	33.0	75.0	0.0	.	.	Atlas-SNP
PRR14L	253143	hgsc.bcm.edu	37	22	32111442	32111442	+	Missense_Mutation	SNP	C	C	T	rs41496947	byfrequency	TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	PRR14L	NM_173566	exon4	c.G2383A	p.V795I	GGGATACATTTTT	.	353.0	178.0	400.0	0.0	C|0.985;T|0.015	.	Atlas-SNP
RECQL	5965	hgsc.bcm.edu	37	12	21624021	21624021	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	RECQL	NM_032941	exon15	c.G1679A	p.S560N	GTAAAACTGTAGT	.	184.0	86.0	179.0	0.0	.	.	Atlas-SNP
NEURL4	84461	hgsc.bcm.edu	37	17	7224433	7224433	+	Missense_Mutation	SNP	C	C	T	rs79385421	byfrequency	TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	NEURL4	NM_032442	exon20	c.G3358A	p.G1120R	TTACTCCCAGGCC	.	51.0	8.0	70.0	0.0	C|0.988;T|0.012	.	Atlas-SNP
BICD2	23299	hgsc.bcm.edu	37	9	95491447	95491447	+	Silent	SNP	G	G	T	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	BICD2	NM_001003800	exon2	c.C312A	p.I104I	CTCCTGGATCAGG	.	145.0	68.0	140.0	0.0	.	.	Atlas-SNP
ATF4	468	hgsc.bcm.edu	37	22	39917960	39917960	+	Missense_Mutation	SNP	A	A	T	rs150385569	byfrequency	TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	ATF4	NM_001675	exon2	c.A409T	p.T137S	CCCCAGACGGTGA	.	134.0	67.0	102.0	0.0	A|0.996;T|0.004	.	Atlas-SNP
PRDM9	56979	hgsc.bcm.edu	37	5	23526849	23526849	+	Missense_Mutation	SNP	T	T	C	rs201513541		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	PRDM9	NM_020227	exon11	c.T1652C	p.L551P	AGAAGCTCTACGT	.	180.0	13.0	178.0	0.0	.	.	Atlas-SNP
OR1L8	138881	hgsc.bcm.edu	37	9	125330051	125330051	+	Missense_Mutation	SNP	G	G	A	rs149185875	byfrequency	TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	OR1L8	NM_001004454	exon1	c.C706T	p.R236C	CTTTGCGTTTCCC	.	159.0	35.0	153.0	0.0	G|1.000;A|0.000	.	Atlas-SNP
KCNK4	50801	hgsc.bcm.edu	37	11	64065018	64065018	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	KCNK4	NM_033310	exon5	c.T554C	p.L185P	TTGTCCTCACGCC	.	293.0	85.0	320.0	0.0	.	.	Atlas-SNP
SEMA5B	54437	hgsc.bcm.edu	37	3	122645440	122645440	+	Missense_Mutation	SNP	C	C	T	rs184302192		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	SEMA5B	NM_001256347	exon9	c.G1097A	p.R366H	ACGGTGCGTCCAC	.	70.0	45.0	77.0	0.0	C|0.999;T|0.001	.	Atlas-SNP
STON2	85439	hgsc.bcm.edu	37	14	81744305	81744305	+	Silent	SNP	G	G	A	rs142806717	byfrequency	TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	STON2	NM_001256430	exon6	c.C1350T	p.F450F	TTTGACGAAGATC	.	157.0	69.0	165.0	0.0	G|0.999;A|0.001	.	Atlas-SNP
TACC2	10579	hgsc.bcm.edu	37	10	123988893	123988893	+	Silent	SNP	C	C	T	rs61753076	byfrequency	TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	TACC2	NM_206862	exon15	c.C7929T	p.D2643D	TGCTGACGCCCTC	.	116.0	51.0	147.0	0.0	C|0.996;T|0.004	.	Atlas-SNP
ZNF337	26152	hgsc.bcm.edu	37	20	25656848	25656848	+	Missense_Mutation	SNP	T	T	A	rs147865316	byfrequency	TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	ZNF337	NM_015655	exon5	c.A1076T	p.N359I	GACTTATTGCTAA	.	170.0	65.0	125.0	0.0	T|0.999;A|0.001	.	Atlas-SNP
MAN2B2	23324	hgsc.bcm.edu	37	4	6612871	6612871	+	Missense_Mutation	SNP	C	C	T	rs150252839	byfrequency	TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	MAN2B2	NM_015274	exon15	c.C2429T	p.T810M	ACCTCACGCTGAA	.	99.0	48.0	109.0	0.0	C|0.997;T|0.003	.	Atlas-SNP
ASNS	440	hgsc.bcm.edu	37	7	97482688	97482688	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	ASNS	NM_133436	exon11	c.A1249G	p.R417G	GGACTCTCAGTTC	.	112.0	62.0	109.0	0.0	.	.	Atlas-SNP
TMEM66	51669	hgsc.bcm.edu	37	8	29923556	29923556	+	Silent	SNP	C	C	T	rs142700582	byfrequency	TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	TMEM66	NM_016127	exon5	c.G942A	p.S314S	GCTGCCCGAGCCT	.	116.0	36.0	219.0	0.0	C|0.998;T|0.002	.	Atlas-SNP
SPTB	6710	hgsc.bcm.edu	37	14	65253204	65253204	+	Missense_Mutation	SNP	C	C	T	rs76283214		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	SPTB	NM_001024858	exon15	c.G3479A	p.R1160H	TGGCTGCGGCTCT	.	68.0	29.0	75.0	0.0	.	.	Atlas-SNP
MUC17	140453	hgsc.bcm.edu	37	7	100677355	100677355	+	Silent	SNP	A	A	C	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	MUC17	NM_001040105	exon3	c.A2658C	p.S886S	CCTTTCAACAACT	.	317.0	40.0	147.0	0.0	.	.	Atlas-SNP
TSPO	706	hgsc.bcm.edu	37	22	43557061	43557061	+	Silent	SNP	C	C	T	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	TSPO	NM_001256531	exon3	c.C186T	p.Y62Y	CAGGTACGGCTCC	.	74.0	41.0	81.0	0.0	.	.	Atlas-SNP
TAS2R43	259289	hgsc.bcm.edu	37	12	11244021	11244021	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	TAS2R43	NM_176884	exon1	c.A808T	p.S270C	GATAGCTGAATCT	.	549.0	271.0	20.0	0.0	.	.	Atlas-SNP
MAMDC4	158056	hgsc.bcm.edu	37	9	139749730	139749730	+	Missense_Mutation	SNP	C	C	T	rs11145905	byfrequency	TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	MAMDC4	NM_206920	exon11	c.C1222T	p.P408S	ACAGGCCCGGGGG	.	66.0	16.0	60.0	0.0	C|0.998;T|0.002	.	Atlas-SNP
DSPP	1834	hgsc.bcm.edu	37	4	88536324	88536324	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	DSPP	NM_014208	exon5	c.A2510G	p.N837S	GCAGCAACAGCAG	.	428.0	23.0	518.0	0.0	.	.	Atlas-SNP
GJA3	2700	hgsc.bcm.edu	37	13	20717030	20717030	+	Missense_Mutation	SNP	C	C	T	rs149933083	byfrequency	TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	GJA3	NM_021954	exon2	c.G398A	p.R133Q	TCGTCCCGCGACG	.	38.0	21.0	32.0	0.0	C|0.998;T|0.002	.	Atlas-SNP
SMG5	23381	hgsc.bcm.edu	37	1	156236116	156236116	+	Silent	SNP	A	A	C	rs147239123	byfrequency	TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	SMG5	NM_015327	exon12	c.T1311G	p.P437P	AGGAGGAGGCTCA	.	39.0	20.0	47.0	0.0	A|0.998;C|0.002	.	Atlas-SNP
ZBTB41	360023	hgsc.bcm.edu	37	1	197160940	197160940	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	ZBTB41	NM_194314	exon2	c.C1210G	p.L404V	CAGTTAGGTTAGA	.	277.0	69.0	353.0	0.0	.	.	Atlas-SNP
USP35	57558	hgsc.bcm.edu	37	11	77924714	77924714	+	Missense_Mutation	SNP	G	G	C	rs146860446	by1000genomes	TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	USP35	NM_020798	exon11	c.G2912C	p.S971T	CCCGGAGCAGGGC	.	33.0	16.0	45.0	0.0	G|0.999;C|0.000	.	Atlas-SNP
SLC2A10	81031	hgsc.bcm.edu	37	20	45354069	45354069	+	Missense_Mutation	SNP	C	C	T	rs121908173		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	SLC2A10	NM_030777	exon2	c.C394T	p.R132W	CGGCAGCGGGGAG	.	91.0	30.0	79.0	0.0	.	.	Atlas-SNP
ARHGAP8	23779	hgsc.bcm.edu	37	22	45204976	45204976	+	Silent	SNP	C	C	T	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	ARHGAP8	NM_001017526	exon5	c.C390T	p.Y130Y	GGATTACAGGCAG	.	77.0	34.0	103.0	0.0	.	.	Atlas-SNP
PIGF	5281	hgsc.bcm.edu	37	2	46842256	46842256	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	PIGF	NM_002643	exon2	c.C48A	p.C16X	AAATATGCATAAA	.	260.0	163.0	275.0	0.0	.	.	Atlas-SNP
MAP3K12	7786	hgsc.bcm.edu	37	12	53876607	53876607	+	Silent	SNP	G	G	A	rs115000617	byfrequency	TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	MAP3K12	NM_001193511	exon11	c.C1980T	p.G660G	AGCTCCGCCTGTG	.	56.0	33.0	39.0	0.0	G|0.999;A|0.001	.	Atlas-SNP
KLK1	3816	hgsc.bcm.edu	37	19	51325021	51325021	+	Silent	SNP	C	C	G	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	KLK1	NM_002257	exon2	c.G153C	p.G51G	GATGCCCCCACAC	.	90.0	28.0	101.0	0.0	.	.	Atlas-SNP
CUBN	8029	hgsc.bcm.edu	37	10	17146498	17146498	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	CUBN	NM_001081	exon12	c.C1337G	p.T446S	ACACAAGTTCCTC	.	177.0	77.0	194.0	0.0	.	.	Atlas-SNP
NRN1	51299	hgsc.bcm.edu	37	6	6006947	6006947	+	Silent	SNP	C	C	A	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	NRN1	NM_016588	exon1	c.G36T	p.L12L	GAGGATCAGTGAA	.	79.0	63.0	98.0	0.0	.	.	Atlas-SNP
ITIH5	80760	hgsc.bcm.edu	37	10	7658041	7658041	+	Silent	SNP	C	C	T	rs72779162	byfrequency	TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	ITIH5	NM_001001851	exon7	c.G843A	p.V281V	GTAGTGCACAAAA	.	197.0	102.0	267.0	0.0	C|0.996;T|0.004	.	Atlas-SNP
LRP1B	53353	hgsc.bcm.edu	37	2	141116392	141116392	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	LRP1B	NM_018557	exon73	c.G11255C	p.G3752A	TTACCACCACAGT	.	171.0	68.0	131.0	0.0	.	.	Atlas-SNP
TRIM48	79097	hgsc.bcm.edu	37	11	55032533	55032533	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	TRIM48	NM_024114	exon2	c.T202C	p.C68R	ACTCAGTGCTTTG	.	1826.0	860.0	1545.0	0.0	.	.	Atlas-SNP
USP34	9736	hgsc.bcm.edu	37	2	61431430	61431430	+	Silent	SNP	G	G	T	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	USP34	NM_014709	exon74	c.C9345A	p.L3115L	CATATTGAGTTCA	.	338.0	190.0	332.0	0.0	.	.	Atlas-SNP
LRP1	4035	hgsc.bcm.edu	37	12	57571249	57571249	+	Silent	SNP	C	C	T	rs2228187	byfrequency	TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	LRP1	NM_002332	exon26	c.C4236T	p.R1412R	GCCCCGCATTGAG	.	123.0	66.0	86.0	0.0	C|0.994;T|0.006	.	Atlas-SNP
WWC2	80014	hgsc.bcm.edu	37	4	184174960	184174960	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	WWC2	NM_024949	exon9	c.C1004T	p.P335L	CCTGGCCTGGGGC	.	171.0	57.0	190.0	0.0	.	.	Atlas-SNP
HSPA8	3312	hgsc.bcm.edu	37	11	122928610	122928610	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	HSPA8	NM_006597	exon9	c.A1773G	p.E591E	TTCAAATTCTTCC	.	69.0	13.0	103.0	0.0	.	.	Atlas-SNP
SOGA2	23255	hgsc.bcm.edu	37	18	8826164	8826164	+	Missense_Mutation	SNP	C	C	G	rs146312067		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	.	NM_015210	exon15	c.C4656G	p.H1552Q	TGCCCACGGGCCC	.	62.0	26.0	59.0	0.0	C|0.999;G|0.000;T|0.000	.	Atlas-SNP
GH2	2689	hgsc.bcm.edu	37	17	61957990	61957990	+	Missense_Mutation	SNP	G	G	A	rs139959045	byfrequency	TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	GH2	NM_022557	exon4	c.C598T	p.P200S	CTGGAGGATTCAC	.	175.0	66.0	145.0	0.0	G|0.999;A|0.001	.	Atlas-SNP
BBS7	55212	hgsc.bcm.edu	37	4	122749855	122749855	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	BBS7	NM_018190	exon16	c.A1705G	p.N569D	AAATGTTGTCAGA	.	307.0	78.0	378.0	0.0	.	.	Atlas-SNP
ATP8B1	5205	hgsc.bcm.edu	37	18	55328584	55328584	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	ATP8B1	NM_005603	exon22	c.A2529C	p.E843D	CTTAGCTTCTAGC	.	403.0	187.0	457.0	0.0	.	.	Atlas-SNP
MOCS3	27304	hgsc.bcm.edu	37	20	49576664	49576664	+	Missense_Mutation	SNP	T	T	G	rs7269297	byfrequency	TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	MOCS3	NM_014484	exon1	c.T1285G	p.S429A	TCCTTATCAGCAG	.	80.0	24.0	76.0	0.0	T|0.994;G|0.006	.	Atlas-SNP
RBBP8NL	140893	hgsc.bcm.edu	37	20	60987680	60987680	+	Missense_Mutation	SNP	C	C	A	rs141582280		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	.	NM_080833	exon13	c.G1876T	p.A626S	CTGTACCTTTGTC	.	45.0	17.0	19.0	0.0	C|1.000;A|0.000	.	Atlas-SNP
MYH7	4625	hgsc.bcm.edu	37	14	23901870	23901870	+	Silent	SNP	G	G	A	rs45500700	byfrequency	TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	MYH7	NM_000257	exon5	c.C480T	p.N160N	ATAGGCGTTGTCG	.	149.0	67.0	201.0	0.0	G|0.998;A|0.002	.	Atlas-SNP
SERPINB3	6317	hgsc.bcm.edu	37	18	61322920	61322920	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	SERPINB3	NM_006919	exon8	c.C1144T	p.L382F	AGAAGAGGATGCT	.	355.0	161.0	352.0	0.0	.	.	Atlas-SNP
CTSL1	1514	hgsc.bcm.edu	37	9	90345935	90345935	+	Missense_Mutation	SNP	A	A	C	rs201049031		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	CTSL1	NM_145918	exon8	c.A915C	p.E305D	TGAAGAATGGGGC	.	196.0	31.0	199.0	0.0	.	.	Atlas-SNP
CEP68	23177	hgsc.bcm.edu	37	2	65296879	65296879	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	CEP68	NM_015147	exon2	c.G301T	p.G101C	CTCAGTGGCCTGC	.	83.0	37.0	55.0	0.0	.	.	Atlas-SNP
HELZ2	85441	hgsc.bcm.edu	37	20	62196661	62196661	+	Missense_Mutation	SNP	C	C	T	rs182835948		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	.	NM_001037335	exon9	c.G3514A	p.V1172M	CCAGCACCTCATC	.	33.0	14.0	24.0	0.0	C|0.999;T|0.001	.	Atlas-SNP
ERI2	112479	hgsc.bcm.edu	37	16	20809773	20809773	+	Missense_Mutation	SNP	A	A	G	rs138948625		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	ERI2	NM_001142725	exon9	c.T1349C	p.L450S	ATTTCCAATTCTT	.	55.0	28.0	80.0	0.0	A|0.996;G|0.004	.	Atlas-SNP
KIAA0368	23392	hgsc.bcm.edu	37	9	114176928	114176928	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	KIAA0368	NM_001080398	exon20	c.G2302A	p.V768I	ACAGAACGATCTA	.	60.0	50.0	41.0	0.0	.	.	Atlas-SNP
GSE1	23199	hgsc.bcm.edu	37	16	85687982	85687982	+	Missense_Mutation	SNP	C	C	G	rs200380779		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	.	NM_014615	exon4	c.C525G	p.H175Q	CTCGCACCTGCTC	.	196.0	94.0	185.0	0.0	.	.	Atlas-SNP
FMN1	342184	hgsc.bcm.edu	37	15	33359093	33359093	+	Silent	SNP	T	T	C	rs74655292	byfrequency	TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	FMN1	NM_001103184	exon1	c.A993G	p.K331K	AGTTGCTTTCTTC	.	221.0	106.0	271.0	0.0	T|0.992;C|0.008	.	Atlas-SNP
GLB1L2	89944	hgsc.bcm.edu	37	11	134241669	134241669	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	GLB1L2	NM_138342	exon15	c.G1452C	p.L484F	GATCTTGGTGGAG	.	74.0	37.0	47.0	0.0	.	.	Atlas-SNP
FAM160A2	84067	hgsc.bcm.edu	37	11	6239103	6239103	+	Silent	SNP	G	G	C	rs147897958	byfrequency	TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	FAM160A2	NM_032127	exon9	c.C1755G	p.T585T	AGACCAGGTACGG	.	34.0	18.0	24.0	0.0	G|0.999;C|0.001	.	Atlas-SNP
GPR112	139378	hgsc.bcm.edu	37	X	135428337	135428337	+	Silent	SNP	C	C	T	rs146527458	byfrequency	TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	GPR112	NM_153834	exon6	c.C2472T	p.T824T	AACGACCCCTGTA	.	265.0	143.0	160.0	0.0	C|0.998;T|0.002	.	Atlas-SNP
COL22A1	169044	hgsc.bcm.edu	37	8	139890360	139890360	+	Silent	SNP	C	C	T	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	COL22A1	NM_152888	exon3	c.G291A	p.S97S	CTCCTGCGAGCCA	.	22.0	12.0	13.0	0.0	.	.	Atlas-SNP
GOLGA5	9950	hgsc.bcm.edu	37	14	93264315	93264315	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	GOLGA5	NM_005113	exon2	c.G533A	p.S178N	TTGGGAGCCAAAC	.	79.0	40.0	79.0	0.0	.	.	Atlas-SNP
MROH1	727957	hgsc.bcm.edu	37	8	145235171	145235171	+	Missense_Mutation	SNP	C	C	T	rs200022874		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	.	NM_001099280	exon6	c.C391T	p.R131C	CTGCTGCGCAGGC	.	116.0	84.0	72.0	0.0	C|1.000;T|0.000	.	Atlas-SNP
SULT1A2	6799	hgsc.bcm.edu	37	16	28603721	28603721	+	Missense_Mutation	SNP	C	C	T	rs45583638	bycluster;byfrequency	TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	SULT1A2	NM_001054	exon7	c.G638A	p.R213H	AGGGAGCGCCCCA	.	276.0	29.0	227.0	0.0	C|0.683;T|0.317	.	Atlas-SNP
CAGE1	285782	hgsc.bcm.edu	37	6	7334254	7334254	+	Splice_Site	SNP	C	C	T	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	CAGE1	NM_205864	exon10	c.1844+1G>A	.	AACTTACCTTGGT	.	40.0	27.0	63.0	0.0	.	.	Atlas-SNP
AFF2	2334	hgsc.bcm.edu	37	X	148059958	148059958	+	Silent	SNP	C	C	T	rs141612728		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	AFF2	NM_002025	exon18	c.C3543T	p.Y1181Y	GAAGTACTCCAGA	.	150.0	64.0	110.0	0.0	C|1.000;T|0.000	.	Atlas-SNP
GALNT13	114805	hgsc.bcm.edu	37	2	155265511	155265511	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	GALNT13	NM_052917	exon11	c.A1312G	p.T438A	GTTGAAACCAATC	.	439.0	247.0	381.0	0.0	.	.	Atlas-SNP
PRR14L	253143	hgsc.bcm.edu	37	22	32113080	32113080	+	Silent	SNP	A	A	G	rs4296524	byfrequency	TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	PRR14L	NM_173566	exon4	c.T745C	p.L249L	TAACTAATGTGCT	.	462.0	242.0	484.0	2.0	A|0.963;G|0.037	.	Atlas-SNP
PCNX	22990	hgsc.bcm.edu	37	14	71444593	71444593	+	Silent	SNP	C	C	T	rs113064017	byfrequency	TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	PCNX	NM_014982	exon6	c.C1539T	p.N513N	AGAAAACAAAGAA	.	58.0	26.0	64.0	0.0	C|0.995;T|0.005	.	Atlas-SNP
PANK1	53354	hgsc.bcm.edu	37	10	91404685	91404685	+	Silent	SNP	C	C	T	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	PANK1	NM_148977	exon1	c.G375A	p.L125L	CCGGCTCAGGCGG	.	17.0	9.0	21.0	0.0	.	.	Atlas-SNP
LRP10	26020	hgsc.bcm.edu	37	14	23346529	23346529	+	Silent	SNP	C	C	G	rs146359029	alternate_allele	TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	LRP10	NM_014045	exon7	c.C1935G	p.P645P	ACTGCCCCTAGAG	.	127.0	77.0	133.0	0.0	C|1.000;A|0.000	.	Atlas-SNP
CYP2D6	1565	hgsc.bcm.edu	37	22	42523475	42523475	+	Missense_Mutation	SNP	C	C	T	rs75386357	bycluster;byfrequency	TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	CYP2D6	NM_000106	exon7	c.G1147A	p.E383K	GTACTTCGATGTC	.	177.0	42.0	197.0	0.0	C|1.000;T|0.000	.	Atlas-SNP
ITGA8	8516	hgsc.bcm.edu	37	10	15573105	15573105	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	ITGA8	NM_003638	exon28	c.G2926A	p.V976I	TCTTAACTTCAAA	.	241.0	105.0	262.0	0.0	.	.	Atlas-SNP
CHD8	57680	hgsc.bcm.edu	37	14	21897308	21897308	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	CHD8	NM_001170629	exon2	c.G1030A	p.V344M	GCTGCACCTGCAG	.	519.0	250.0	533.0	0.0	.	.	Atlas-SNP
DNAH3	55567	hgsc.bcm.edu	37	16	20975849	20975849	+	Silent	SNP	C	C	T	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	DNAH3	NM_017539	exon53	c.G9357A	p.L3119L	TAACTGCAGCGCG	.	145.0	77.0	142.0	0.0	.	.	Atlas-SNP
SNCG	6623	hgsc.bcm.edu	37	10	88719763	88719763	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	SNCG	NM_003087	exon3	c.G169A	p.E57K	GTGGCCGAGAAGA	.	115.0	61.0	122.0	0.0	.	.	Atlas-SNP
IAH1	285148	hgsc.bcm.edu	37	2	9621442	9621442	+	Missense_Mutation	SNP	T	T	G	rs151051276		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	IAH1	NM_001039613	exon4	c.T311G	p.L104R	TTCCCCTGGAGGA	.	107.0	62.0	114.0	0.0	T|0.999;G|0.001	.	Atlas-SNP
CEP170	9859	hgsc.bcm.edu	37	1	243291578	243291578	+	Missense_Mutation	SNP	G	G	T	rs184190530		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	CEP170	NM_014812	exon19	c.C4438A	p.L1480M	TTTTCAGTTCCTG	.	748.0	335.0	905.0	0.0	G|0.997;T|0.003	.	Atlas-SNP
NAV2	89797	hgsc.bcm.edu	37	11	20066919	20066919	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	NAV2	NM_001244963	exon15	c.G3674A	p.R1225Q	ACAGCCGGAACGG	.	80.0	40.0	88.0	0.0	.	.	Atlas-SNP
SERPINA10	51156	hgsc.bcm.edu	37	14	94754805	94754805	+	Silent	SNP	G	G	A	rs2232707	byfrequency	TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	SERPINA10	NM_001100607	exon3	c.C810T	p.Y270Y	TGCACCGTACATC	.	147.0	83.0	152.0	0.0	G|0.999;A|0.001	.	Atlas-SNP
CRB2	286204	hgsc.bcm.edu	37	9	126136903	126136903	+	Silent	SNP	C	C	T	rs148933240	byfrequency	TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	CRB2	NM_173689	exon11	c.C3435T	p.L1145L	CTGCCTCGATGGC	.	52.0	32.0	33.0	0.0	C|1.000;T|0.000	.	Atlas-SNP
FAM184A	79632	hgsc.bcm.edu	37	6	119301418	119301418	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	FAM184A	NM_024581	exon10	c.T2186C	p.L729P	TGCGTAAGCCGCT	.	384.0	200.0	420.0	0.0	.	.	Atlas-SNP
WIPF2	147179	hgsc.bcm.edu	37	17	38418867	38418867	+	Missense_Mutation	SNP	G	G	A	rs150747102		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	WIPF2	NM_133264	exon4	c.G287A	p.R96Q	AGCTTCGACCTGT	.	241.0	92.0	196.0	0.0	G|1.000;A|0.000	.	Atlas-SNP
ASB16	92591	hgsc.bcm.edu	37	17	42255679	42255679	+	Missense_Mutation	SNP	G	G	A	rs140865656	byfrequency	TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	ASB16	NM_080863	exon5	c.G1283A	p.R428Q	GCTGCCGGCAGGG	.	50.0	38.0	46.0	0.0	G|0.998;A|0.002	.	Atlas-SNP
KIAA1731	85459	hgsc.bcm.edu	37	11	93430425	93430425	+	Missense_Mutation	SNP	C	C	G	rs117405490		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	KIAA1731	NM_033395	exon15	c.C2347G	p.P783A	ACTGAACCTTCTT	.	176.0	79.0	209.0	0.0	C|0.998;G|0.002	.	Atlas-SNP
ATXN2	6311	hgsc.bcm.edu	37	12	111902514	111902514	+	Missense_Mutation	SNP	G	G	A	rs140242317	byfrequency	TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	ATXN2	NM_002973	exon21	c.C3322T	p.P1108S	ATTTGGGACATGC	.	158.0	83.0	180.0	0.0	G|0.999;A|0.001	.	Atlas-SNP
HSD3B7	80270	hgsc.bcm.edu	37	16	30999122	30999122	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	HSD3B7	NM_025193	exon7	c.G728A	p.R243Q	CAGCCCGGGAGCT	.	38.0	19.0	47.0	0.0	.	.	Atlas-SNP
DYNC2H1	79659	hgsc.bcm.edu	37	11	103086522	103086522	+	Missense_Mutation	SNP	G	G	A	rs200377414		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	DYNC2H1	NM_001377	exon55	c.G8767A	p.V2923M	CAAAGTGTGTTAC	.	96.0	48.0	111.0	0.0	G|0.999;A|0.001	.	Atlas-SNP
GAK	2580	hgsc.bcm.edu	37	4	877843	877843	+	Missense_Mutation	SNP	T	T	C	rs11722461	byfrequency	TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	GAK	NM_005255	exon12	c.A1237G	p.I413V	ATGTGATGTAAGA	.	60.0	33.0	115.0	0.0	T|0.999;C|0.001	.	Atlas-SNP
SLC26A11	284129	hgsc.bcm.edu	37	17	78219021	78219021	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	SLC26A11	NM_173626	exon11	c.G1063C	p.V355L	TCCCTCGTCTCCT	.	168.0	100.0	132.0	0.0	.	.	Atlas-SNP
RPS6KA3	6197	hgsc.bcm.edu	37	X	20227510	20227510	+	Missense_Mutation	SNP	T	T	C	rs140987045	byfrequency	TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	RPS6KA3	NM_004586	exon3	c.A139G	p.I47V	CTTTGATACTGAC	.	182.0	86.0	115.0	0.0	T|0.998;C|0.002	.	Atlas-SNP
RGMB	285704	hgsc.bcm.edu	37	5	98129109	98129109	+	Silent	SNP	C	C	T	rs61746616	byfrequency	TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	.	NM_001012761	exon5	c.C1089T	p.I363I	ACGCATCGATGAC	.	63.0	35.0	54.0	0.0	C|0.998;T|0.002	.	Atlas-SNP
TKTL1	8277	hgsc.bcm.edu	37	X	153539474	153539474	+	Silent	SNP	T	T	C	rs144977343	byfrequency	TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	TKTL1	NM_012253	exon5	c.T555C	p.Y185Y	CACTTATGTGGTG	.	233.0	118.0	106.0	0.0	T|0.999;C|0.001	.	Atlas-SNP
KIF2C	11004	hgsc.bcm.edu	37	1	45225956	45225956	+	Missense_Mutation	SNP	T	T	A	rs201075516		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	KIF2C	NM_006845	exon15	c.T1372A	p.S458T	AGAACCTCTGGGC	.	126.0	52.0	148.0	0.0	T|0.999;A|0.001	.	Atlas-SNP
GPR68	8111	hgsc.bcm.edu	37	14	91701210	91701210	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	GPR68	NM_001177676	exon2	c.A185G	p.N62S	GTCAGGTTGCACA	.	51.0	31.0	73.0	0.0	.	.	Atlas-SNP
DZIP1L	199221	hgsc.bcm.edu	37	3	137787045	137787045	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	DZIP1L	NM_173543	exon13	c.C1780G	p.P594A	GTCCGGGGCGTGG	.	142.0	71.0	106.0	0.0	.	.	Atlas-SNP
MLL	4297	hgsc.bcm.edu	37	11	118376077	118376077	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	MLL	NM_001197104	exon27	c.T9470C	p.L3157P	GATTGCTACCCAT	.	184.0	87.0	194.0	0.0	.	.	Atlas-SNP
RYR2	6262	hgsc.bcm.edu	37	1	237961363	237961363	+	Silent	SNP	C	C	T	rs138498780	byfrequency	TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	RYR2	NM_001035	exon97	c.C13983T	p.Y4661Y	GTTCTACGGCCGA	.	111.0	62.0	126.0	0.0	C|0.999;T|0.001	.	Atlas-SNP
SYNGR2	9144	hgsc.bcm.edu	37	17	76167090	76167090	+	Missense_Mutation	SNP	G	G	A	rs145550918	byfrequency	TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	SYNGR2	NM_004710	exon2	c.G292A	p.A98T	AGCAACGCCACTG	.	138.0	51.0	99.0	0.0	G|1.000;A|0.000	.	Atlas-SNP
CDH4	1002	hgsc.bcm.edu	37	20	60427926	60427926	+	Silent	SNP	C	C	T	rs139703524	byfrequency	TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	CDH4	NM_001794	exon6	c.C849T	p.N283N	CTACAACGGCTCC	.	89.0	53.0	101.0	0.0	C|0.996;T|0.004	.	Atlas-SNP
KLHL21	9903	hgsc.bcm.edu	37	1	6653710	6653710	+	Silent	SNP	C	C	G	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	KLHL21	NM_014851	exon4	c.G1509C	p.V503V	GCCCCCCACATGT	.	108.0	62.0	111.0	0.0	.	.	Atlas-SNP
TAS2R43	259289	hgsc.bcm.edu	37	12	11244199	11244199	+	Missense_Mutation	SNP	C	C	G	rs201245949	byfrequency	TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	TAS2R43	NM_176884	exon1	c.G630C	p.Q210H	ATGGAGCTGCATC	.	474.0	49.0	48.0	0.0	C|0.994;G|0.006	.	Atlas-SNP
ADAMTS12	81792	hgsc.bcm.edu	37	5	33643533	33643533	+	Missense_Mutation	SNP	G	G	A	rs143654915	byfrequency	TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	ADAMTS12	NM_030955	exon10	c.C1522T	p.R508C	TAGAGCGACAAAA	.	197.0	107.0	209.0	0.0	G|0.999;A|0.001	.	Atlas-SNP
MAGEC1	9947	hgsc.bcm.edu	37	X	140994305	140994305	+	Missense_Mutation	SNP	C	C	T	rs138698960		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	MAGEC1	NM_005462	exon4	c.C1115T	p.P372L	AGTCTCCTCTCCA	.	675.0	66.0	351.0	0.0	C|1.000;T|0.000	.	Atlas-SNP
MRC2	9902	hgsc.bcm.edu	37	17	60753158	60753158	+	Missense_Mutation	SNP	C	C	T	rs151074691		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	MRC2	NM_006039	exon10	c.C1577T	p.T526M	GTTGGACGTGGCA	.	71.0	16.0	71.0	0.0	C|1.000;T|0.000	.	Atlas-SNP
ZNF518B	85460	hgsc.bcm.edu	37	4	10445259	10445259	+	Silent	SNP	C	C	T	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	ZNF518B	NM_053042	exon3	c.G2694A	p.R898R	TTTCTTCCTGGAT	.	159.0	78.0	163.0	0.0	.	.	Atlas-SNP
KIAA1524	57650	hgsc.bcm.edu	37	3	108284259	108284259	+	Silent	SNP	A	A	T	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	KIAA1524	NM_020890	exon12	c.T1458A	p.I486I	TTTGTTAATCAAA	.	280.0	133.0	322.0	0.0	.	.	Atlas-SNP
WIPF3	644150	hgsc.bcm.edu	37	7	29923958	29923958	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	WIPF3	NM_001080529	exon5	c.C848T	p.A283V	GCCCTGCGCAAGA	.	75.0	43.0	46.0	0.0	.	.	Atlas-SNP
ARMC4	55130	hgsc.bcm.edu	37	10	28225709	28225709	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	ARMC4	NM_018076	exon15	c.C2198T	p.A733V	ACAGCAGCTAACC	.	228.0	124.0	204.0	0.0	.	.	Atlas-SNP
IKBKE	9641	hgsc.bcm.edu	37	1	206669453	206669453	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	IKBKE	NM_014002	exon22	c.G2126A	p.R709K	TAAATAGAGTCCC	.	163.0	46.0	188.0	0.0	.	.	Atlas-SNP
CASKIN1	57524	hgsc.bcm.edu	37	16	2235162	2235162	+	Missense_Mutation	SNP	C	C	T	rs199943254		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	CASKIN1	NM_020764	exon12	c.G1189A	p.G397S	CCCGGCCGCCAGC	.	12.0	4.0	11.0	0.0	.	.	Atlas-SNP
IGDCC4	57722	hgsc.bcm.edu	37	15	65693258	65693258	+	Missense_Mutation	SNP	C	C	T	rs35223184	byfrequency	TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	IGDCC4	NM_020962	exon5	c.G727A	p.D243N	CCACGTCCTGCCC	.	105.0	44.0	99.0	0.0	C|0.995;T|0.005	.	Atlas-SNP
KIF13B	23303	hgsc.bcm.edu	37	8	28929820	28929820	+	Missense_Mutation	SNP	A	A	C	rs202077289		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	KIF13B	NM_015254	exon39	c.T4535G	p.M1512R	GGGCCCATCTCCG	.	116.0	78.0	160.0	0.0	.	.	Atlas-SNP
MUC4	4585	hgsc.bcm.edu	37	3	195511379	195511379	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	MUC4	NM_018406	exon2	c.G7072C	p.A2358P	AGGAAGCGTCGGT	.	213.0	17.0	166.0	0.0	.	.	Atlas-SNP
TRMT12	55039	hgsc.bcm.edu	37	8	125463233	125463233	+	Missense_Mutation	SNP	C	C	T	rs201957009		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	TRMT12	NM_017956	exon1	c.C65T	p.A22V	TTGTCGCAGTTGT	.	241.0	59.0	107.0	0.0	.	.	Atlas-SNP
FAM133A	286499	hgsc.bcm.edu	37	X	92964437	92964437	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	FAM133A	NM_173698	exon4	c.C19T	p.R7W	GATAATCGGGTAG	.	179.0	86.0	85.0	0.0	.	.	Atlas-SNP
ZNF598	90850	hgsc.bcm.edu	37	16	2048975	2048975	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	ZNF598	NM_178167	exon12	c.C2201G	p.T734S	TTTGTGGTGGTGG	.	54.0	27.0	56.0	0.0	.	.	Atlas-SNP
AEN	64782	hgsc.bcm.edu	37	15	89169479	89169479	+	Silent	SNP	G	G	C	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	AEN	NM_022767	exon2	c.G39C	p.L13L	GTGCCTGTGCCCT	.	31.0	17.0	22.0	0.0	.	.	Atlas-SNP
DNAJB1	3337	hgsc.bcm.edu	37	19	14629138	14629138	+	Silent	SNP	C	C	T	rs141518218	byfrequency	TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	DNAJB1	NM_006145	exon1	c.G24A	p.T8T	GCCCAACGTCTGG	.	21.0	9.0	22.0	0.0	C|0.995;T|0.005	.	Atlas-SNP
LYZL2	119180	hgsc.bcm.edu	37	10	30915708	30915708	+	Missense_Mutation	SNP	T	T	G	rs142897252		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	LYZL2	NM_183058	exon2	c.A275C	p.N92T	TCACAGTTTCCAA	.	434.0	100.0	461.0	0.0	T|1.000;G|0.000	.	Atlas-SNP
TMEM155	132332	hgsc.bcm.edu	37	4	122681612	122681612	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	TMEM155	NM_152399	exon6	c.G230A	p.R77H	GTGCTGCGGGGAC	.	132.0	63.0	143.0	0.0	.	.	Atlas-SNP
SLC25A29	123096	hgsc.bcm.edu	37	14	100759090	100759090	+	Missense_Mutation	SNP	G	G	A	rs148590600	byfrequency	TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	SLC25A29	NM_001039355	exon4	c.C442T	p.R148C	CGCCACGCAGACC	.	12.0	11.0	17.0	0.0	G|0.999;A|0.001	.	Atlas-SNP
SSPO	23145	hgsc.bcm.edu	37	7	149522165	149522165	+	Missense_Mutation	SNP	G	G	A	rs117136255	byfrequency	TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	.	NM_198455	exon96	c.G13952A	p.R4651Q	GCTGCCGGGAGCC	.	35.0	20.0	62.0	0.0	G|0.997;A|0.003	.	Atlas-SNP
LILRA6	79168	hgsc.bcm.edu	37	19	54744753	54744753	+	Silent	SNP	G	G	C	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	LILRA6	NM_024318	exon5	c.C909G	p.S303S	CTCGGAGGAGAGG	.	225.0	13.0	259.0	0.0	.	.	Atlas-SNP
SLC36A4	120103	hgsc.bcm.edu	37	11	92914937	92914937	+	Silent	SNP	T	T	C	rs76786276	byfrequency	TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	SLC36A4	NM_152313	exon5	c.A375G	p.T125T	ACCTAATGTTGAC	.	135.0	71.0	203.0	0.0	T|0.997;C|0.003	.	Atlas-SNP
DAGLB	221955	hgsc.bcm.edu	37	7	6452470	6452470	+	Missense_Mutation	SNP	C	C	T	rs149326625		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	DAGLB	NM_139179	exon13	c.G1541A	p.R514Q	ACCACTCGCAAGA	.	126.0	42.0	130.0	0.0	C|1.000;T|0.000	.	Atlas-SNP
UNC79	57578	hgsc.bcm.edu	37	14	94088053	94088053	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	.	NM_020818	exon30	c.A3943G	p.K1315E	CCGAAAAAAAAGC	.	126.0	58.0	151.0	0.0	.	.	Atlas-SNP
TARS2	80222	hgsc.bcm.edu	37	1	150463943	150463943	+	Missense_Mutation	SNP	C	C	T	rs201778963		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	TARS2	NM_001271896	exon5	c.C586T	p.R196W	CCCTTCCGGAGGC	.	217.0	106.0	214.0	0.0	C|0.999;T|0.001	.	Atlas-SNP
FANCD2	2177	hgsc.bcm.edu	37	3	10135980	10135980	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	FANCD2	NM_001018115	exon40	c.G3896A	p.R1299H	ATGGGCGTCTCTT	.	85.0	42.0	88.0	0.0	.	.	Atlas-SNP
TBC1D22A	25771	hgsc.bcm.edu	37	22	47569260	47569260	+	Silent	SNP	C	C	T	rs148728745	byfrequency	TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	TBC1D22A	NM_014346	exon13	c.C1545T	p.Y515Y	TCACTACAAGAAA	.	72.0	33.0	78.0	0.0	C|0.999;T|0.001	.	Atlas-SNP
MUC17	140453	hgsc.bcm.edu	37	7	100678972	100678972	+	Silent	SNP	C	C	A	rs200296064		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	MUC17	NM_001040105	exon3	c.C4275A	p.T1425T	CAGCACCCCTGGG	.	246.0	41.0	143.0	0.0	C|0.997;A|0.003	.	Atlas-SNP
ADD3	120	hgsc.bcm.edu	37	10	111892134	111892134	+	Missense_Mutation	SNP	C	C	A	rs149714005		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	ADD3	NM_016824	exon14	c.C1804A	p.Q602K	TCACCGCAAAATG	.	102.0	53.0	79.0	0.0	C|1.000;A|0.000	.	Atlas-SNP
PANX2	56666	hgsc.bcm.edu	37	22	50616224	50616224	+	Silent	SNP	C	C	G	rs150592820	byfrequency	TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	PANX2	NM_052839	exon2	c.C1083G	p.L361L	GTCGCTCAACCGG	.	35.0	17.0	26.0	0.0	C|0.996;G|0.004	.	Atlas-SNP
PPFIA4	8497	hgsc.bcm.edu	37	1	203024756	203024756	+	Missense_Mutation	SNP	C	C	T	rs182905918		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	PPFIA4	NM_015053	exon3	c.C508T	p.R170C	ACCTCCCGCAGTG	.	154.0	88.0	163.0	0.0	C|0.999;T|0.001	.	Atlas-SNP
PPP1R21	129285	hgsc.bcm.edu	37	2	48725836	48725836	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	.	NM_152994	exon17	c.G1897T	p.A633S	GCCACAGCTAAGG	.	296.0	135.0	213.0	0.0	.	.	Atlas-SNP
TUBB1	81027	hgsc.bcm.edu	37	20	57599507	57599507	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	TUBB1	NM_030773	exon4	c.T1025G	p.V342G	GCTTTGTGGAGTG	.	56.0	36.0	43.0	0.0	.	.	Atlas-SNP
PRDM9	56979	hgsc.bcm.edu	37	5	23526853	23526853	+	Silent	SNP	C	C	T	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	PRDM9	NM_020227	exon11	c.C1656T	p.Y552Y	GCTCTACGTCTGC	.	179.0	19.0	169.0	0.0	.	.	Atlas-SNP
SLC26A1	10861	hgsc.bcm.edu	37	4	985237	985237	+	Silent	SNP	C	C	T	rs147094131	byfrequency	TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	SLC26A1	NM_022042	exon2	c.G255A	p.P85P	GGCCTGCGGCACC	.	70.0	41.0	88.0	0.0	C|0.998;T|0.002	.	Atlas-SNP
PIGW	284098	hgsc.bcm.edu	37	17	34893655	34893655	+	Missense_Mutation	SNP	C	C	G	rs61755368	byfrequency	TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	PIGW	NM_178517	exon2	c.C705G	p.H235Q	AGTTCACTGGAAC	.	210.0	81.0	180.0	0.0	C|0.995;G|0.005	.	Atlas-SNP
MUC4	4585	hgsc.bcm.edu	37	3	195509655	195509655	+	Silent	SNP	G	G	T	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	MUC4	NM_018406	exon2	c.C8796A	p.T2932T	AAGGCTGGTGACA	.	252.0	18.0	139.0	0.0	.	.	Atlas-SNP
RPL6	6128	hgsc.bcm.edu	37	12	112846051	112846051	+	Missense_Mutation	SNP	C	C	T	rs199559137		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	RPL6	NM_001024662	exon3	c.G329A	p.R110H	ATTTTGCGAAGTT	.	77.0	36.0	101.0	0.0	C|0.999;T|0.001	.	Atlas-SNP
SPATA4	132851	hgsc.bcm.edu	37	4	177116534	177116534	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	SPATA4	NM_144644	exon1	c.G180C	p.Q60H	CAGACCCTGAAGC	.	101.0	47.0	104.0	0.0	.	.	Atlas-SNP
NCAPD2	9918	hgsc.bcm.edu	37	12	6637850	6637850	+	Missense_Mutation	SNP	G	G	A	rs201735986		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	NCAPD2	NM_014865	exon26	c.G3305A	p.R1102Q	GTCTCCGGGACCC	.	32.0	18.0	39.0	0.0	.	.	Atlas-SNP
POLA1	5422	hgsc.bcm.edu	37	X	24757573	24757573	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	POLA1	NM_016937	exon20	c.C2104T	p.R702C	TTGATTCGTTGTA	.	276.0	76.0	134.0	0.0	.	.	Atlas-SNP
FUK	197258	hgsc.bcm.edu	37	16	70502771	70502771	+	Missense_Mutation	SNP	T	T	A	rs201690930	byfrequency	TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	FUK	NM_145059	exon9	c.T683A	p.F228Y	TCTTCTTCTCTGT	.	101.0	40.0	142.0	0.0	T|0.998;A|0.002	.	Atlas-SNP
SLC41A3	54946	hgsc.bcm.edu	37	3	125735629	125735629	+	Missense_Mutation	SNP	C	C	T	rs139399598	byfrequency	TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	SLC41A3	NM_017836	exon7	c.G835A	p.V279M	TCTTCACGATGGG	.	48.0	21.0	47.0	0.0	C|0.998;T|0.002	.	Atlas-SNP
CD247	919	hgsc.bcm.edu	37	1	167402295	167402295	+	Missense_Mutation	SNP	C	C	T	rs201594815		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	CD247	NM_198053	exon7	c.G395A	p.R132H	CTCCGGCGCTGGT	.	46.0	25.0	63.0	0.0	C|0.999;T|0.000	.	Atlas-SNP
TENC1	23371	hgsc.bcm.edu	37	12	53452578	53452578	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	TENC1	NM_015319	exon17	c.A1402G	p.N468D	TATGAGAACTTCA	.	38.0	21.0	40.0	0.0	.	.	Atlas-SNP
LPHN3	23284	hgsc.bcm.edu	37	4	62935976	62935976	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	LPHN3	NM_015236	exon23	c.G3760A	p.A1254T	GAGACCGCCCTAG	.	121.0	68.0	159.0	0.0	.	.	Atlas-SNP
DFNA5	1687	hgsc.bcm.edu	37	7	24789347	24789347	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	DFNA5	NM_001127453	exon2	c.A47T	p.D16V	TCACCATCAGCAT	.	194.0	61.0	171.0	0.0	.	.	Atlas-SNP
JRK	8629	hgsc.bcm.edu	37	8	143747023	143747023	+	Missense_Mutation	SNP	C	C	T	rs201592742		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	.	NM_003724	exon2	c.G455A	p.S152N	TTTTCACTGGATG	.	72.0	45.0	82.0	0.0	.	.	Atlas-SNP
ZNF462	58499	hgsc.bcm.edu	37	9	109691206	109691206	+	Silent	SNP	G	G	A	rs116985783	byfrequency	TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	ZNF462	NM_021224	exon3	c.G5013A	p.T1671T	CTCCACGAGGAAG	.	132.0	107.0	125.0	0.0	G|0.997;A|0.003	.	Atlas-SNP
TSC2	7249	hgsc.bcm.edu	37	16	2131729	2131729	+	Silent	SNP	C	C	T	rs45517307		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	TSC2	NM_001114382	exon31	c.C3744T	p.A1248A	CACAGCCCTGTAC	.	123.0	61.0	109.0	0.0	.	.	Atlas-SNP
PRELP	5549	hgsc.bcm.edu	37	1	203452996	203452996	+	Silent	SNP	G	G	A	rs139420607	byfrequency	TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	PRELP	NM_201348	exon2	c.G684A	p.L228L	CAACCTGGCCCAC	.	160.0	89.0	156.0	0.0	G|0.996;A|0.004	.	Atlas-SNP
DNAAF3	352909	hgsc.bcm.edu	37	19	55670467	55670467	+	Missense_Mutation	SNP	G	G	A	rs200673226	byfrequency	TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	.	NM_001256714	exon12	c.C1790T	p.P597L	TTGGGCGGAGCCA	.	62.0	39.0	64.0	0.0	G|0.998;A|0.002	.	Atlas-SNP
VWA3B	200403	hgsc.bcm.edu	37	2	98810904	98810904	+	Silent	SNP	A	A	G	rs139485698	byfrequency	TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	VWA3B	NM_144992	exon12	c.A1686G	p.E562E	TGCTGAAGTCAAT	.	120.0	75.0	113.0	0.0	A|0.997;G|0.003	.	Atlas-SNP
SDCCAG3	10807	hgsc.bcm.edu	37	9	139299100	139299100	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	SDCCAG3	NM_001039707	exon8	c.G1051A	p.E351K	TGATTTCCTGTTT	.	174.0	127.0	215.0	0.0	.	.	Atlas-SNP
DDX52	11056	hgsc.bcm.edu	37	17	35985983	35985983	+	Missense_Mutation	SNP	T	T	C	rs61749870	byfrequency	TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	DDX52	NM_007010	exon8	c.A1094G	p.K365R	TTGAGTTTGCACC	.	215.0	134.0	190.0	0.0	T|0.997;C|0.003	.	Atlas-SNP
INTS1	26173	hgsc.bcm.edu	37	7	1536852	1536852	+	Silent	SNP	G	G	A	rs200632106		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	.	NM_001080453	exon11	c.C1524T	p.H508H	GATCTCGTGCTTG	.	102.0	38.0	105.0	0.0	G|0.999;A|0.001	.	Atlas-SNP
EFS	10278	hgsc.bcm.edu	37	14	23829220	23829220	+	Missense_Mutation	SNP	C	C	T	rs2231804	byfrequency	TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	EFS	NM_005864	exon4	c.G467A	p.R156Q	GGCACCCGGAGGG	.	21.0	11.0	23.0	0.0	C|0.991;T|0.009	.	Atlas-SNP
PRSS1	5644	hgsc.bcm.edu	37	7	142459667	142459667	+	Silent	SNP	G	G	A	rs142476093	alternate_allele	TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	PRSS1	NM_002769	exon3	c.G243A	p.L81L	AGTCCTGGAGGGG	.	200.0	23.0	210.0	0.0	G|1.000;C|0.000	.	Atlas-SNP
SYNE2	23224	hgsc.bcm.edu	37	14	64565536	64565536	+	Silent	SNP	C	C	T	rs36007735	byfrequency	TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	SYNE2	NM_182914	exon63	c.C12378T	p.S4126S	GAAGAGCGATGTA	.	154.0	79.0	185.0	0.0	C|0.995;T|0.005	.	Atlas-SNP
VPS13D	55187	hgsc.bcm.edu	37	1	12393309	12393309	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	VPS13D	NM_015378	exon38	c.C8314T	p.P2772S	CCTTGGCCATGCT	.	222.0	140.0	260.0	0.0	.	.	Atlas-SNP
ACSS2	55902	hgsc.bcm.edu	37	20	33501946	33501946	+	Missense_Mutation	SNP	G	G	C	rs148166087	byfrequency	TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	ACSS2	NM_001076552	exon6	c.G691C	p.D231H	CTGGCTGACGAGG	.	184.0	105.0	152.0	0.0	G|0.999;C|0.001	.	Atlas-SNP
CALM3	808	hgsc.bcm.edu	37	19	47111743	47111743	+	Silent	SNP	C	C	T	rs3729761	byfrequency	TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	CALM3	NM_005184	exon4	c.C183T	p.N61N	AGGGAACGGGACC	.	71.0	33.0	83.0	0.0	C|1.000;T|0.000	.	Atlas-SNP
ASAP3	55616	hgsc.bcm.edu	37	1	23763676	23763676	+	Missense_Mutation	SNP	G	G	A	rs146159261	byfrequency	TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	ASAP3	NM_017707	exon14	c.C1289T	p.A430V	ACCTCCGCGATGA	.	118.0	64.0	82.0	0.0	G|0.998;A|0.002	.	Atlas-SNP
PHOX2B	8929	hgsc.bcm.edu	37	4	41748178	41748178	+	Silent	SNP	G	G	C	rs144414806		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	PHOX2B	NM_003924	exon3	c.C591G	p.G197G	ACCTGGGCCCCCA	.	30.0	18.0	27.0	0.0	G|1.000;C|0.000	.	Atlas-SNP
BAG4	9530	hgsc.bcm.edu	37	8	38034402	38034402	+	Silent	SNP	G	G	A	rs61731143		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	BAG4	NM_001204878	exon1	c.G15A	p.R5R	CCTGAGGCGCTCG	.	22.0	8.0	34.0	0.0	G|0.995;A|0.005	.	Atlas-SNP
TTC37	9652	hgsc.bcm.edu	37	5	94878949	94878949	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	TTC37	NM_014639	exon5	c.A173G	p.Q58R	TGGGCCTGATCAG	.	235.0	67.0	209.0	0.0	.	.	Atlas-SNP
GUF1	60558	hgsc.bcm.edu	37	4	44688589	44688589	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	GUF1	NM_021927	exon8	c.A797G	p.Y266C	ACCAGTATAGAGG	.	175.0	79.0	187.0	0.0	.	.	Atlas-SNP
NOTCH3	4854	hgsc.bcm.edu	37	19	15285006	15285006	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	NOTCH3	NM_000435	exon25	c.G4609A	p.A1537T	GGATGGCGCTGAG	.	10.0	7.0	4.0	0.0	.	.	Atlas-SNP
HCN1	348980	hgsc.bcm.edu	37	5	45262899	45262899	+	Silent	SNP	T	T	C	rs148932124	byfrequency	TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	HCN1	NM_021072	exon8	c.A1797G	p.S599S	AAGAATTGAATTT	.	94.0	48.0	113.0	0.0	T|0.996;C|0.004	.	Atlas-SNP
RAG2	5897	hgsc.bcm.edu	37	11	36614624	36614624	+	Silent	SNP	A	A	G	rs140519815	byfrequency	TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	RAG2	NM_001243785	exon3	c.T1095C	p.S365S	TGTTTGACTGTTT	.	270.0	137.0	290.0	0.0	A|0.999;G|0.001	.	Atlas-SNP
C11orf82	220042	hgsc.bcm.edu	37	11	82645246	82645246	+	Missense_Mutation	SNP	G	G	A	rs141656476	byfrequency	TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	C11orf82	NM_145018	exon6	c.G2866A	p.A956T	TTAGCAGCACCTC	.	123.0	63.0	146.0	0.0	G|0.998;A|0.002	.	Atlas-SNP
CD44	960	hgsc.bcm.edu	37	11	35243921	35243921	+	Splice_Site	SNP	G	G	A	rs140184039	byfrequency	TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	CD44	NM_001202557	exon9	c.882-1G>A	.	ACTGTAGTTGAAG	.	688.0	340.0	688.0	0.0	G|0.995;A|0.005	.	Atlas-SNP
RNF10	9921	hgsc.bcm.edu	37	12	121004739	121004739	+	Missense_Mutation	SNP	C	C	T	rs61760871	byfrequency	TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	RNF10	NM_014868	exon13	c.C1997T	p.A666V	ATGGGGCCCTCTC	.	203.0	101.0	192.0	0.0	C|0.998;T|0.002	.	Atlas-SNP
MYBL1	4603	hgsc.bcm.edu	37	8	67478376	67478376	+	Missense_Mutation	SNP	T	T	C	rs201124847		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	MYBL1	NM_001080416	exon15	c.A2053G	p.N685D	TTTTGTTGGTTGA	.	1455.0	437.0	996.0	1.0	T|0.999;C|0.001	.	Atlas-SNP
TBC1D22A	25771	hgsc.bcm.edu	37	22	47189616	47189616	+	Missense_Mutation	SNP	C	C	T	rs146025212	byfrequency	TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	TBC1D22A	NM_014346	exon3	c.C338T	p.T113M	GGCCCACGCTGCA	.	18.0	7.0	15.0	0.0	C|0.996;T|0.004	.	Atlas-SNP
LOXL3	84695	hgsc.bcm.edu	37	2	74762832	74762832	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	LOXL3	NM_032603	exon8	c.A1299G	p.Q433Q	CCCTATTTGCACC	.	60.0	17.0	60.0	0.0	.	.	Atlas-SNP
CTNNAL1	8727	hgsc.bcm.edu	37	9	111745483	111745483	+	Missense_Mutation	SNP	G	G	A	rs140530317	byfrequency	TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	CTNNAL1	NM_003798	exon6	c.C842T	p.P281L	CCATTCGGTTTAC	.	223.0	170.0	327.0	1.0	G|0.999;A|0.001	.	Atlas-SNP
LIPE	3991	hgsc.bcm.edu	37	19	42930721	42930721	+	Missense_Mutation	SNP	G	G	A	rs34996020	byfrequency	TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	LIPE	NM_005357	exon1	c.C581T	p.A194V	GATTTGGCTCCCT	.	296.0	126.0	339.0	0.0	G|0.997;A|0.003	.	Atlas-SNP
COL11A2	1302	hgsc.bcm.edu	37	6	33134299	33134299	+	Silent	SNP	G	G	A	rs148262058	byfrequency	TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	COL11A2	NM_080680	exon60	c.C4383T	p.P1461P	GAGGCCGGGGGGA	.	50.0	38.0	69.0	0.0	G|0.999;A|0.001	.	Atlas-SNP
RSPH3	83861	hgsc.bcm.edu	37	6	159420735	159420735	+	Missense_Mutation	SNP	G	G	A	rs41267755	byfrequency	TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	RSPH3	NM_031924	exon1	c.C274T	p.P92S	GGGACGGGAGGTT	.	77.0	39.0	67.0	0.0	G|0.998;A|0.002	.	Atlas-SNP
GAS2	2620	hgsc.bcm.edu	37	11	22747858	22747858	+	Silent	SNP	C	C	A	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	GAS2	NM_177553	exon4	c.C288A	p.I96I	GAAGATCCCATGC	.	163.0	54.0	173.0	0.0	.	.	Atlas-SNP
CFH	3075	hgsc.bcm.edu	37	1	196712674	196712674	+	Missense_Mutation	SNP	C	C	G	rs62625015		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	CFH	NM_000186	exon20	c.C3226G	p.Q1076E	CGTTATCAATGTA	.	397.0	185.0	705.0	0.0	C|1.000;G|0.000	.	Atlas-SNP
FAM200B	285550	hgsc.bcm.edu	37	4	15689067	15689067	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	.	NM_001145191	exon2	c.G467C	p.R156P	CATATCGTGTGGC	.	230.0	81.0	203.0	0.0	.	.	Atlas-SNP
ZFYVE26	23503	hgsc.bcm.edu	37	14	68265035	68265035	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	ZFYVE26	NM_015346	exon11	c.T1944G	p.H648Q	CTTCACATGGCTT	.	265.0	130.0	294.0	1.0	.	.	Atlas-SNP
MUC17	140453	hgsc.bcm.edu	37	7	100681474	100681474	+	Silent	SNP	A	A	G	rs140759809	byfrequency	TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	MUC17	NM_001040105	exon3	c.A6777G	p.S2259S	CACTTCATCTCCT	.	244.0	31.0	168.0	0.0	A|1.000;G|0.000	.	Atlas-SNP
SLC26A11	284129	hgsc.bcm.edu	37	17	78210810	78210810	+	Missense_Mutation	SNP	G	G	C	rs145160723	byfrequency	TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	SLC26A11	NM_173626	exon8	c.G820C	p.G274R	CTAACAGGGGAGA	.	143.0	82.0	121.0	0.0	G|0.998;C|0.002	.	Atlas-SNP
FBXL12	54850	hgsc.bcm.edu	37	19	9921880	9921880	+	Missense_Mutation	SNP	G	G	A	rs140944467	byfrequency	TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	FBXL12	NM_017703	exon3	c.C673T	p.R225C	GGTGGCGGCTGAT	.	70.0	41.0	69.0	0.0	G|0.998;A|0.002	.	Atlas-SNP
LRTM1	57408	hgsc.bcm.edu	37	3	54952664	54952664	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	LRTM1	NM_020678	exon3	c.C860T	p.A287V	ACAGTGGCAATGG	.	198.0	55.0	171.0	0.0	.	.	Atlas-SNP
STARD13	90627	hgsc.bcm.edu	37	13	33692335	33692335	+	Missense_Mutation	SNP	G	G	T	rs147008159	byfrequency	TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	STARD13	NM_178006	exon8	c.C2148A	p.N716K	AGGGAAGTTTTCA	.	121.0	61.0	126.0	0.0	G|0.999;T|0.001	.	Atlas-SNP
CLDN16	10686	hgsc.bcm.edu	37	3	190106015	190106015	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	CLDN16	NM_006580	exon1	c.C107T	p.S36L	TATTTTCACATTG	.	176.0	88.0	212.0	0.0	.	.	Atlas-SNP
MIB2	142678	hgsc.bcm.edu	37	1	1558782	1558782	+	Missense_Mutation	SNP	C	C	T	rs201820622		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	MIB2	NM_001170686	exon3	c.C295T	p.R99W	GCAGCCCGGCCCA	.	40.0	23.0	33.0	0.0	.	.	Atlas-SNP
IL22RA1	58985	hgsc.bcm.edu	37	1	24460722	24460722	+	Silent	SNP	C	C	T	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	IL22RA1	NM_021258	exon4	c.G510A	p.Q170Q	GTTGACCTGGAGC	.	88.0	19.0	105.0	0.0	.	.	Atlas-SNP
CASZ1	54897	hgsc.bcm.edu	37	1	10708107	10708107	+	Missense_Mutation	SNP	G	G	A	rs138085050	byfrequency	TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	CASZ1	NM_001079843	exon16	c.C3248T	p.A1083V	GAGGGGGCCATGG	.	168.0	99.0	110.0	0.0	G|0.999;A|0.001	.	Atlas-SNP
RELN	5649	hgsc.bcm.edu	37	7	103126801	103126801	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	RELN	NM_173054	exon61	c.G9826A	p.A3276T	CTCTTGCGGACTC	.	65.0	15.0	122.0	0.0	.	.	Atlas-SNP
MTERF	7978	hgsc.bcm.edu	37	7	91503822	91503822	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	MTERF	NM_006980	exon3	c.G286A	p.V96I	GAAAAACTCCAGG	.	800.0	52.0	148.0	0.0	.	.	Atlas-SNP
SETD1A	9739	hgsc.bcm.edu	37	16	30990969	30990969	+	Missense_Mutation	SNP	C	C	T	rs147948503	byfrequency	TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	SETD1A	NM_014712	exon14	c.C3862T	p.R1288C	GCCGAGCGCCCTA	.	36.0	16.0	34.0	0.0	C|0.999;T|0.001	.	Atlas-SNP
CUBN	8029	hgsc.bcm.edu	37	10	16992011	16992011	+	Missense_Mutation	SNP	G	G	A	rs141640975	byfrequency	TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	CUBN	NM_001081	exon34	c.C5069T	p.A1690V	AGGGGCGCGTCTT	.	61.0	28.0	85.0	0.0	G|0.998;A|0.002	.	Atlas-SNP
AIG1	51390	hgsc.bcm.edu	37	6	143486228	143486228	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	AIG1	NM_016108	exon3	c.G307C	p.A103P	GTTGTAGCAGTGT	.	355.0	168.0	444.0	0.0	.	.	Atlas-SNP
FAM179B	23116	hgsc.bcm.edu	37	14	45540988	45540988	+	Silent	SNP	G	G	A	rs150288120	byfrequency	TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	FAM179B	NM_015091	exon18	c.G4884A	p.T1628T	CATGACGGAAAAG	.	85.0	39.0	99.0	0.0	G|0.999;A|0.001	.	Atlas-SNP
C8orf48	157773	hgsc.bcm.edu	37	8	13424565	13424565	+	Missense_Mutation	SNP	C	C	T	rs201250059		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	.	NM_001007090	exon1	c.C65T	p.T22I	ATGAGACTGAGAC	.	65.0	15.0	101.0	0.0	C|0.998;T|0.002	.	Atlas-SNP
TMEM99	147184	hgsc.bcm.edu	37	17	38991252	38991252	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	TMEM99	NM_001195386	exon3	c.G484A	p.G162S	CATGCCGGTTGGC	.	220.0	127.0	220.0	1.0	.	.	Atlas-SNP
CLEC12A	160364	hgsc.bcm.edu	37	12	10124214	10124214	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	CLEC12A	NM_001207010	exon2	c.T49C	p.Y17H	GTTACTTATGCAG	.	134.0	66.0	153.0	0.0	.	.	Atlas-SNP
ABCD3	5825	hgsc.bcm.edu	37	1	94956791	94956791	+	Silent	SNP	C	C	T	rs149365004	byfrequency	TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	ABCD3	NM_002858	exon16	c.C1374T	p.D458D	CCGAGACCTTAAT	.	300.0	118.0	389.0	0.0	C|0.998;T|0.002	.	Atlas-SNP
ZNF154	7710	hgsc.bcm.edu	37	19	58213743	58213743	+	Nonsense_Mutation	SNP	G	G	A	rs74939505	byfrequency	TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	ZNF154	NM_001085384	exon3	c.C574T	p.R192X	ACTCTCGACATTC	.	242.0	134.0	234.0	0.0	G|0.993;A|0.007	.	Atlas-SNP
NHLRC3	387921	hgsc.bcm.edu	37	13	39618302	39618302	+	Missense_Mutation	SNP	T	T	G	rs9603498	byfrequency	TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	NHLRC3	NM_001012754	exon5	c.T662G	p.L221R	TTACACTTGATTC	.	197.0	104.0	194.0	1.0	T|0.989;G|0.011	.	Atlas-SNP
OLFM3	118427	hgsc.bcm.edu	37	1	102269806	102269806	+	Silent	SNP	C	C	T	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	OLFM3	NM_058170	exon6	c.G1365A	p.E455E	GTCATCCTCTGTC	.	202.0	112.0	191.0	1.0	.	.	Atlas-SNP
ANKLE1	126549	hgsc.bcm.edu	37	19	17394375	17394375	+	Missense_Mutation	SNP	G	G	C	rs138078858	byfrequency	TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	.	NM_152363	exon5	c.G802C	p.E268Q	GGCACGGAGGCAG	.	33.0	19.0	51.0	0.0	G|0.991;C|0.009	.	Atlas-SNP
SGSM3	27352	hgsc.bcm.edu	37	22	40801686	40801686	+	Missense_Mutation	SNP	G	G	A	rs148778846		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	SGSM3	NM_015705	exon8	c.G652A	p.E218K	GAGGAGGAGGACG	.	87.0	40.0	71.0	0.0	G|1.000;A|0.000	.	Atlas-SNP
PRRC2A	7916	hgsc.bcm.edu	37	6	31599557	31599557	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	PRRC2A	NM_004638	exon16	c.G3107A	p.R1036K	GAGGGAGGGGTTT	.	55.0	17.0	39.0	0.0	.	.	Atlas-SNP
BRAT1	221927	hgsc.bcm.edu	37	7	2581807	2581807	+	Missense_Mutation	SNP	A	A	C	rs150942467	byfrequency	TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	BRAT1	NM_152743	exon7	c.T962G	p.L321R	GGCTGGAGAAGGA	.	69.0	38.0	55.0	0.0	A|0.995;C|0.005	.	Atlas-SNP
ATP6V1B2	526	hgsc.bcm.edu	37	8	20072436	20072436	+	Silent	SNP	C	C	T	rs139068025		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	ATP6V1B2	NM_001693	exon10	c.C1035T	p.N345N	GAGAAACGGCTCG	.	129.0	20.0	192.0	0.0	C|1.000;T|0.000	.	Atlas-SNP
ATP2C2	9914	hgsc.bcm.edu	37	16	84485669	84485669	+	Silent	SNP	G	G	T	rs201509217		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	ATP2C2	NM_014861	exon18	c.G1803T	p.G601G	AACGGGGGATGCC	.	150.0	68.0	167.0	0.0	G|0.999;T|0.000	.	Atlas-SNP
RING1	6015	hgsc.bcm.edu	37	6	33177562	33177562	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	RING1	NM_002931	exon3	c.G238T	p.G80W	CGGAGCGGGTAAT	.	75.0	43.0	109.0	0.0	.	.	Atlas-SNP
TBPL1	9519	hgsc.bcm.edu	37	6	134305739	134305739	+	Silent	SNP	T	T	A	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	TBPL1	NM_004865	exon6	c.T411A	p.A137A	TCCTGCTGTGTGC	.	292.0	89.0	354.0	0.0	.	.	Atlas-SNP
C4orf22	255119	hgsc.bcm.edu	37	4	81283977	81283977	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	C4orf22	NM_152770	exon2	c.G181A	p.D61N	AGGGAAGATTTTG	.	131.0	59.0	142.0	0.0	.	.	Atlas-SNP
HLA-DPB1	3115	hgsc.bcm.edu	37	6	33048569	33048569	+	Missense_Mutation	SNP	T	T	A	rs145190720	byfrequency	TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	HLA-DPB1	NM_002121	exon2	c.T221A	p.F74Y	GGGAGTTCCGGGC	.	74.0	10.0	83.0	0.0	T|0.996;A|0.004	.	Atlas-SNP
PRR14L	253143	hgsc.bcm.edu	37	22	32109911	32109911	+	Missense_Mutation	SNP	T	T	C	rs35027698		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	PRR14L	NM_173566	exon4	c.A3914G	p.E1305G	TTCTTTTCCACAC	.	173.0	95.0	148.0	0.0	T|0.985;C|0.015	.	Atlas-SNP
MDM4	4194	hgsc.bcm.edu	37	1	204518437	204518437	+	Missense_Mutation	SNP	C	C	T	rs201947927		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	MDM4,head_neck,carcinoma,0	MDM4	NM_002393	exon11	c.C1100T	p.S367L	CCATTTCGGCTCC	.	125.0	54.0	145.0	0.0	C|0.999;T|0.000	.	Atlas-SNP
PPP5C	5536	hgsc.bcm.edu	37	19	46878978	46878978	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	PPP5C	NM_006247	exon3	c.G481A	p.V161M	CGCTCCGTGGTGG	.	186.0	85.0	172.0	0.0	.	.	Atlas-SNP
KCNK4	50801	hgsc.bcm.edu	37	11	64065012	64065012	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	KCNK4	NM_033310	exon5	c.T548C	p.F183S	TGCTCTTTGTCCT	.	283.0	79.0	315.0	0.0	.	.	Atlas-SNP
ZNF331	55422	hgsc.bcm.edu	37	19	54074878	54074878	+	Silent	SNP	C	C	T	rs141689271	byfrequency	TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	ZNF331	NM_001253801	exon4	c.C30T	p.D10D	CGCCGACGTAGCC	.	131.0	60.0	145.0	0.0	C|0.996;T|0.004	.	Atlas-SNP
RBM10	8241	hgsc.bcm.edu	37	X	47041006	47041006	+	Silent	SNP	C	C	T	rs143917116	byfrequency	TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	RBM10	NM_001204468	exon14	c.C1731T	p.A577A	ATCAGCCGAGGCG	.	61.0	26.0	31.0	0.0	C|0.998;T|0.002	.	Atlas-SNP
VPS13B	157680	hgsc.bcm.edu	37	8	100833621	100833621	+	Missense_Mutation	SNP	G	G	T	rs140095832	byfrequency	TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	VPS13B	NM_017890	exon50	c.G9169T	p.D3057Y	TGGAAAGATGGAG	.	401.0	115.0	204.0	0.0	G|0.999;T|0.001	.	Atlas-SNP
ZNF76	7629	hgsc.bcm.edu	37	6	35261689	35261689	+	Silent	SNP	G	G	A	rs148794766		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	ZNF76	NM_003427	exon12	c.G1491A	p.Q497Q	GACGCAGCCCGTA	.	108.0	92.0	139.0	1.0	G|1.000;A|0.000	.	Atlas-SNP
DLEC1	9940	hgsc.bcm.edu	37	3	38163785	38163785	+	Missense_Mutation	SNP	G	G	A	rs151322214	byfrequency	TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	DLEC1	NM_007335	exon37	c.G5150A	p.S1717N	GGAGTAGTGAGCT	.	106.0	36.0	97.0	0.0	G|0.997;A|0.003	.	Atlas-SNP
MUC4	4585	hgsc.bcm.edu	37	3	195513394	195513394	+	Missense_Mutation	SNP	A	A	T	rs201993444		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	MUC4	NM_018406	exon2	c.T5057A	p.L1686H	GAGGAAAGGCCGG	.	376.0	40.0	428.0	0.0	.	.	Atlas-SNP
DYRK3	8444	hgsc.bcm.edu	37	1	206821952	206821952	+	Missense_Mutation	SNP	G	G	A	rs145519561		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	DYRK3	NM_003582	exon3	c.G1409A	p.R470H	GCTCACGTAGGGG	.	108.0	55.0	101.0	0.0	G|1.000;A|0.000	.	Atlas-SNP
GRIK5	2901	hgsc.bcm.edu	37	19	42558474	42558474	+	Missense_Mutation	SNP	T	T	C	rs146585971	byfrequency	TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	GRIK5	NM_002088	exon8	c.A1054G	p.M352V	TCACCATGCGCAG	.	45.0	22.0	50.0	0.0	T|0.998;C|0.002	.	Atlas-SNP
YTHDC2	64848	hgsc.bcm.edu	37	5	112903383	112903383	+	Missense_Mutation	SNP	T	T	G	rs76945231	byfrequency	TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	YTHDC2	NM_022828	exon23	c.T3081G	p.I1027M	AGCAATTAAGGCA	.	112.0	58.0	135.0	0.0	T|0.996;G|0.004	.	Atlas-SNP
JAKMIP1	152789	hgsc.bcm.edu	37	4	6086603	6086603	+	Silent	SNP	A	A	G	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	JAKMIP1	NM_001099433	exon5	c.T924C	p.N308N	CAGCGTATTTCTG	.	136.0	38.0	182.0	0.0	.	.	Atlas-SNP
CASC5	57082	hgsc.bcm.edu	37	15	40913676	40913676	+	Missense_Mutation	SNP	A	A	G	rs113313996		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	CASC5	NM_170589	exon11	c.A1292G	p.D431G	ATCAGGATGCCAG	.	139.0	74.0	137.0	0.0	.	.	Atlas-SNP
C11orf57	55216	hgsc.bcm.edu	37	11	111952743	111952743	+	Missense_Mutation	SNP	G	G	C	rs150961853	byfrequency	TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	C11orf57	NM_001082969	exon5	c.G358C	p.E120Q	CCTGAAGAATTTG	.	81.0	24.0	119.0	0.0	G|0.998;C|0.002	.	Atlas-SNP
HIVEP3	59269	hgsc.bcm.edu	37	1	42047102	42047102	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	HIVEP3	NM_024503	exon4	c.G3367A	p.V1123M	GGAACACTTGCAG	.	149.0	74.0	139.0	0.0	.	.	Atlas-SNP
PLEC	5339	hgsc.bcm.edu	37	8	144991995	144991995	+	Silent	SNP	G	G	A	rs113137721	byfrequency	TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	PLEC	NM_201380	exon32	c.C12405T	p.P4135P	GAACTCGGGGCCC	.	104.0	63.0	51.0	0.0	G|0.996;A|0.004	.	Atlas-SNP
GOLGA5	9950	hgsc.bcm.edu	37	14	93264316	93264316	+	Silent	SNP	C	C	T	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	GOLGA5	NM_005113	exon2	c.C534T	p.S178S	TGGGAGCCAAACC	.	78.0	40.0	77.0	0.0	.	.	Atlas-SNP
GPR132	29933	hgsc.bcm.edu	37	14	105517675	105517675	+	Missense_Mutation	SNP	C	C	T	rs61737948	byfrequency	TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	GPR132	NM_013345	exon4	c.G799A	p.A267T	AGGCAGCGGCTTT	.	123.0	55.0	115.0	0.0	C|0.996;T|0.004	.	Atlas-SNP
MUC17	140453	hgsc.bcm.edu	37	7	100681444	100681444	+	Silent	SNP	A	A	C	rs201002287		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	MUC17	NM_001040105	exon3	c.A6747C	p.T2249T	CAGCACACCTGTG	.	262.0	18.0	174.0	0.0	A|0.999;C|0.001	.	Atlas-SNP
ANPEP	290	hgsc.bcm.edu	37	15	90347221	90347221	+	Silent	SNP	G	G	A	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	ANPEP	NM_001150	exon7	c.C1192T	p.L398L	TCACCAGGTTCCC	.	95.0	50.0	88.0	0.0	.	.	Atlas-SNP
TNXB	7148	hgsc.bcm.edu	37	6	32011639	32011639	+	Missense_Mutation	SNP	T	T	C	rs2395085	byfrequency	TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	TNXB	NM_019105	exon35	c.A11411G	p.Q3804R	CGGGCCTGGCCAT	.	135.0	116.0	73.0	0.0	T|0.996;C|0.004	.	Atlas-SNP
AHNAK2	113146	hgsc.bcm.edu	37	14	105420604	105420604	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	AHNAK2	NM_138420	exon7	c.T1184C	p.L395S	GTGGGCAATGGCA	.	119.0	63.0	128.0	0.0	.	.	Atlas-SNP
SCMH1	22955	hgsc.bcm.edu	37	1	41540902	41540902	+	Missense_Mutation	SNP	G	G	A	rs143365597	byfrequency	TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	SCMH1	NM_001172219	exon9	c.C967T	p.P323S	TGCCAGGTTTGGG	.	330.0	173.0	338.0	0.0	G|0.998;A|0.002	.	Atlas-SNP
ATP8B1	5205	hgsc.bcm.edu	37	18	55328591	55328591	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	ATP8B1	NM_005603	exon22	c.G2522A	p.R841K	TCTAGCCTCCTTT	.	408.0	191.0	476.0	0.0	.	.	Atlas-SNP
PRR11	55771	hgsc.bcm.edu	37	17	57262863	57262863	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	PRR11	NM_018304	exon4	c.T342C	p.S114S	TTACAGTGTAAAA	.	261.0	158.0	216.0	1.0	.	.	Atlas-SNP
ELP4	26610	hgsc.bcm.edu	37	11	31648679	31648679	+	Missense_Mutation	SNP	A	A	G	rs181956435		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	ELP4	NM_019040	exon6	c.A676G	p.K226E	TACACAAAGCTGC	.	614.0	300.0	641.0	2.0	A|0.999;G|0.001	.	Atlas-SNP
SDCCAG3	10807	hgsc.bcm.edu	37	9	139299101	139299101	+	Silent	SNP	C	C	T	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	SDCCAG3	NM_001039707	exon8	c.G1050A	p.Q350Q	GATTTCCTGTTTT	.	174.0	127.0	213.0	0.0	.	.	Atlas-SNP
KIAA0391	9692	hgsc.bcm.edu	37	14	35596805	35596805	+	Missense_Mutation	SNP	G	G	C	rs149121781	byfrequency	TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	KIAA0391	NM_014672	exon4	c.G1155C	p.K385N	CAGAAAGACAACA	.	156.0	72.0	172.0	0.0	G|1.000;C|0.000	.	Atlas-SNP
ITGAE	3682	hgsc.bcm.edu	37	17	3655126	3655126	+	Missense_Mutation	SNP	C	C	T	rs149540181	byfrequency	TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	ITGAE	NM_002208	exon15	c.G1711A	p.G571R	TGAACCCGGGGTG	.	88.0	30.0	140.0	0.0	C|0.997;T|0.003	.	Atlas-SNP
FMN2	56776	hgsc.bcm.edu	37	1	240371409	240371409	+	Silent	SNP	G	G	T	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	FMN2	NM_020066	exon5	c.G3297T	p.P1099P	CCCTCCGCCCCCT	.	75.0	14.0	84.0	0.0	.	.	Atlas-SNP
KIAA0317	9870	hgsc.bcm.edu	37	14	75130622	75130622	+	Silent	SNP	C	C	T	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	KIAA0317	NM_001039479	exon19	c.G2349A	p.T783T	AGGCAGCGTGCTA	.	106.0	55.0	120.0	0.0	.	.	Atlas-SNP
AKAP7	9465	hgsc.bcm.edu	37	6	131602819	131602819	+	Missense_Mutation	SNP	G	G	A	rs34796711	byfrequency	TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	AKAP7	NM_016377	exon8	c.G1000A	p.E334K	AAAACCGAAGCAG	.	156.0	73.0	138.0	0.0	G|0.998;A|0.002	.	Atlas-SNP
HYLS1	219844	hgsc.bcm.edu	37	11	125769924	125769924	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	HYLS1	NM_001134793	exon3	c.C661T	p.R221W	TACAAACGGGACT	.	53.0	33.0	106.0	0.0	.	.	Atlas-SNP
C8orf48	157773	hgsc.bcm.edu	37	8	13424600	13424600	+	Missense_Mutation	SNP	A	A	T	rs188494481		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	.	NM_001007090	exon1	c.A100T	p.T34S	GTACAGACTTCCA	.	68.0	18.0	106.0	0.0	A|0.999;T|0.001	.	Atlas-SNP
ZSWIM5	57643	hgsc.bcm.edu	37	1	45484245	45484245	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	ZSWIM5	NM_020883	exon14	c.G3439A	p.E1147K	AGGTCTCCCGAGC	.	297.0	135.0	281.0	0.0	.	.	Atlas-SNP
DNAH3	55567	hgsc.bcm.edu	37	16	20946807	20946807	+	Missense_Mutation	SNP	C	C	G	rs142540448	byfrequency	TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	DNAH3	NM_017539	exon61	c.G11860C	p.E3954Q	TCCATTCCTGGAG	.	65.0	30.0	57.0	0.0	C|0.998;G|0.002	.	Atlas-SNP
KIF16B	55614	hgsc.bcm.edu	37	20	16407815	16407815	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	KIF16B	NM_001199865	exon15	c.C1546T	p.P516S	TCAGGGGTATCAG	.	120.0	26.0	98.0	0.0	.	.	Atlas-SNP
NYAP1	222950	hgsc.bcm.edu	37	7	100086981	100086981	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	.	NM_173564	exon4	c.C1637T	p.T546I	CCCTGACCCCGCT	.	48.0	25.0	25.0	0.0	.	.	Atlas-SNP
C16orf96	342346	hgsc.bcm.edu	37	16	4638271	4638271	+	Missense_Mutation	SNP	C	C	T	rs140406650		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	.	NM_001145011	exon9	c.C2531T	p.T844M	AGGTCACGATCCA	.	88.0	48.0	82.0	0.0	C|0.999;T|0.000	.	Atlas-SNP
WWC1	23286	hgsc.bcm.edu	37	5	167855138	167855138	+	Silent	SNP	C	C	T	rs116010648	byfrequency	TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	WWC1	NM_015238	exon12	c.C1911T	p.S637S	GGCTTCCGTGCAG	.	336.0	185.0	350.0	0.0	C|0.997;T|0.003	.	Atlas-SNP
EGFL6	25975	hgsc.bcm.edu	37	X	13637316	13637316	+	Silent	SNP	G	G	C	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	EGFL6	NM_001167890	exon9	c.G1137C	p.L379L	CGGCCTGATTCTG	.	199.0	97.0	132.0	0.0	.	.	Atlas-SNP
BCL6B	255877	hgsc.bcm.edu	37	17	6928508	6928508	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	BCL6B	NM_181844	exon5	c.G878A	p.R293H	GGGCTCGTCCACT	.	25.0	10.0	45.0	0.0	.	.	Atlas-SNP
HIPK4	147746	hgsc.bcm.edu	37	19	40886673	40886673	+	Missense_Mutation	SNP	C	C	T	rs140678043		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	HIPK4	NM_144685	exon3	c.G1225A	p.G409S	TGCTGCCGGCCAC	.	62.0	31.0	59.0	0.0	C|1.000;T|0.000	.	Atlas-SNP
WDR62	284403	hgsc.bcm.edu	37	19	36593721	36593721	+	Silent	SNP	G	G	A	rs117887683	byfrequency	TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	WDR62	NM_001083961	exon27	c.G3303A	p.T1101T	CTCCACGCAGTTC	.	75.0	28.0	107.0	0.0	G|0.999;A|0.001	.	Atlas-SNP
WARS	7453	hgsc.bcm.edu	37	14	100835498	100835498	+	Missense_Mutation	SNP	G	G	C	rs143974221	byfrequency	TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	WARS	NM_004184	exon2	c.C25G	p.L9V	CCAGCAGAGATGC	.	60.0	45.0	80.0	0.0	G|0.999;C|0.001	.	Atlas-SNP
HERC1	8925	hgsc.bcm.edu	37	15	63908854	63908854	+	Silent	SNP	G	G	A	rs61751108	byfrequency	TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	HERC1	NM_003922	exon75	c.C13716T	p.L4572L	TTCATCGAGGCAG	.	21.0	6.0	37.0	0.0	G|0.996;A|0.004	.	Atlas-SNP
VRK2	7444	hgsc.bcm.edu	37	2	58276020	58276020	+	Silent	SNP	C	C	T	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	VRK2	NM_001130480	exon2	c.C54T	p.G18G	AGAAGGCAAGGTT	.	375.0	95.0	308.0	0.0	.	.	Atlas-SNP
FUT2	2524	hgsc.bcm.edu	37	19	49206818	49206818	+	Missense_Mutation	SNP	G	G	A	rs142821014	byfrequency	TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	FUT2	NM_001097638	exon2	c.G605A	p.R202Q	TTCGCCGAGGGGA	.	56.0	21.0	59.0	0.0	G|0.999;A|0.001	.	Atlas-SNP
SP140L	93349	hgsc.bcm.edu	37	2	231266520	231266520	+	Missense_Mutation	SNP	A	A	G	rs200010887		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	SP140L	NM_138402	exon18	c.A1642G	p.K548E	TCTTACAAGGTAG	.	811.0	209.0	570.0	1.0	.	.	Atlas-SNP
WNK2	65268	hgsc.bcm.edu	37	9	96051438	96051438	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	WNK2	NM_006648	exon19	c.G4402A	p.A1468T	AGGGACGCCAGTG	.	39.0	30.0	25.0	0.0	.	.	Atlas-SNP
DNAH10	196385	hgsc.bcm.edu	37	12	124393917	124393917	+	Missense_Mutation	SNP	C	C	G	rs201747286		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	DNAH10	NM_207437	exon57	c.C9571G	p.P3191A	TCCGACCCGAATT	.	117.0	56.0	125.0	0.0	.	.	Atlas-SNP
PDCD11	22984	hgsc.bcm.edu	37	10	105164845	105164845	+	Missense_Mutation	SNP	G	G	C	rs61756019	byfrequency	TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	PDCD11	NM_014976	exon5	c.G469C	p.G157R	AGTCTGGGCATCA	.	225.0	107.0	279.0	0.0	G|0.995;C|0.005	.	Atlas-SNP
