Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	Algorithm
PTPN20A	653129	hgsc.bcm.edu	37	10	46568210	46568210	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	PTPN20A	NM_001042389	exon7	c.614delG	p.S205fs	.	.	182.0	12.0	196.0	0.0	.	.	Atlas-Indel
ASB18	401036	hgsc.bcm.edu	37	2	237103580	237103580	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	ASB18	NM_212556	exon6	c.1337delT	p.L446fs	.	.	138.0	10.0	130.0	0.0	.	.	Atlas-Indel
GTPBP2	54676	hgsc.bcm.edu	37	6	43596730	43596730	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	GTPBP2	NM_019096	exon1	c.171delG	p.P57fs	.	.	208.0	14.0	139.0	0.0	.	.	Atlas-Indel
GRIA3	2892	hgsc.bcm.edu	37	X	122528895	122528895	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	GRIA3	NM_000828	exon6	c.826delG	p.E276fs	.	.	185.0	12.0	144.0	0.0	.	.	Atlas-Indel
USP28	57646	hgsc.bcm.edu	37	11	113704215	113704215	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	USP28	NM_020886	exon7	c.687delT	p.N229fs	.	.	148.0	10.0	133.0	0.0	.	.	Atlas-Indel
SETBP1	26040	hgsc.bcm.edu	37	18	42456590	42456590	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	SETBP1	NM_001130110	exon4	c.600delC	p.F200fs	.	.	173.0	11.0	164.0	0.0	.	.	Atlas-Indel
MORN1	79906	hgsc.bcm.edu	37	1	2268183	2268183	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	MORN1	NM_024848	exon11	c.1144delT	p.F382fs	.	.	151.0	11.0	142.0	0.0	.	.	Atlas-Indel
ISG20L2	81875	hgsc.bcm.edu	37	1	156697122	156697122	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	ISG20L2	NM_030980	exon1	c.324delG	p.K108fs	.	.	180.0	13.0	89.0	0.0	.	.	Atlas-Indel
EXOC2	55770	hgsc.bcm.edu	37	6	556513	556513	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	EXOC2	NM_018303	exon18	c.1904delT	p.V635fs	.	.	243.0	15.0	180.0	0.0	.	.	Atlas-Indel
ACSS3	79611	hgsc.bcm.edu	37	12	81647384	81647384	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	ACSS3	NM_024560	exon15	c.1929delC	p.P643fs	.	.	108.0	10.0	93.0	0.0	.	.	Atlas-Indel
PCDHAC1	56135	hgsc.bcm.edu	37	5	140306876	140306876	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	PCDHAC1	NM_031882	exon1	c.398delT	p.I133fs	.	.	180.0	11.0	145.0	0.0	.	.	Atlas-Indel
CNOT6L	246175	hgsc.bcm.edu	37	4	78697453	78697453	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	CNOT6L	NM_144571	exon2	c.100delT	p.S34fs	.	.	129.0	11.0	123.0	0.0	.	.	Atlas-Indel
ANKAR	150709	hgsc.bcm.edu	37	2	190611122	190611122	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	ANKAR	NM_144708	exon23	c.4073delG	p.R1358fs	.	.	158.0	10.0	147.0	0.0	.	.	Atlas-Indel
GCM2	9247	hgsc.bcm.edu	37	6	10876681	10876681	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	GCM2	NM_004752	exon3	c.454delC	p.Q152fs	.	.	177.0	14.0	98.0	0.0	.	.	Atlas-Indel
PIF1	80119	hgsc.bcm.edu	37	15	65108937	65108937	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	PIF1	NM_025049	exon12	c.1703delC	p.S568fs	.	.	209.0	13.0	180.0	0.0	.	.	Atlas-Indel
HNRNPUL1	11100	hgsc.bcm.edu	37	19	41811722	41811722	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	HNRNPUL1	NM_007040	exon14	c.2403delA	p.P801fs	.	.	112.0	10.0	98.0	0.0	.	.	Atlas-Indel
MLL2	8085	hgsc.bcm.edu	37	12	49438211	49438211	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	MLL2	NM_003482	exon20	c.5059delC	p.R1687fs	.	.	412.0	25.0	387.0	0.0	.	.	Atlas-Indel
HELLS	3070	hgsc.bcm.edu	37	10	96348094	96348094	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	HELLS	NM_018063	exon13	c.1434delC	p.I478fs	.	.	130.0	10.0	135.0	0.0	.	.	Atlas-Indel
ANKRD20A1	84210	hgsc.bcm.edu	37	9	67934789	67934789	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	ANKRD20A1	NM_032250	exon4	c.558delG	p.L186fs	.	.	195.0	12.0	194.0	0.0	.	.	Atlas-Indel
EGFR	1956	hgsc.bcm.edu	37	7	55220290	55220290	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	EGFR	NM_005228	exon6	c.679delT	p.S227fs	.	.	180.0	11.0	157.0	0.0	.	.	Atlas-Indel
SAMD11	148398	hgsc.bcm.edu	37	1	874450	874450	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	SAMD11	NM_152486	exon6	c.460delT	p.S154fs	.	.	176.0	12.0	157.0	0.0	.	.	Atlas-Indel
IDI2	91734	hgsc.bcm.edu	37	10	1065633	1065633	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	IDI2	NM_033261	exon5	c.509delG	p.S170fs	.	.	183.0	11.0	180.0	0.0	.	.	Atlas-Indel
KIAA1841	84542	hgsc.bcm.edu	37	2	61308630	61308630	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	KIAA1841	NM_032506	exon7	c.713delT	p.L238X	.	.	152.0	10.0	135.0	0.0	.	.	Atlas-Indel
TMEFF2	23671	hgsc.bcm.edu	37	2	192818525	192818525	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	TMEFF2	NM_016192	exon9	c.909delG	p.K303fs	.	.	138.0	11.0	113.0	0.0	.	.	Atlas-Indel
UNC13C	440279	hgsc.bcm.edu	37	15	54626040	54626040	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	UNC13C	NM_001080534	exon14	c.4569delC	p.T1523fs	.	.	165.0	11.0	113.0	0.0	.	.	Atlas-Indel
TACR2	6865	hgsc.bcm.edu	37	10	71164684	71164684	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	TACR2	NM_001057	exon5	c.1096delT	p.S366fs	.	.	165.0	10.0	132.0	0.0	.	.	Atlas-Indel
KCNH5	27133	hgsc.bcm.edu	37	14	63174303	63174303	+	Frame_Shift_Del	DEL	G	G	-	rs35940222		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	KCNH5	NM_139318	exon11	c.2891delA	p.Q964fs	.	.	159.0	11.0	147.0	0.0	.	.	Atlas-Indel
KIF24	347240	hgsc.bcm.edu	37	9	34306393	34306393	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	KIF24	NM_194313	exon3	c.671delT	p.I224fs	.	.	207.0	13.0	192.0	0.0	.	.	Atlas-Indel
ZC3H7A	29066	hgsc.bcm.edu	37	16	11868316	11868316	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	ZC3H7A	NM_014153	exon9	c.680delC	p.S227fs	.	.	112.0	11.0	84.0	0.0	.	.	Atlas-Indel
RASA1	5921	hgsc.bcm.edu	37	5	86675571	86675571	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	RASA1	NM_002890	exon19	c.2506delG	p.E836fs	.	.	209.0	13.0	131.0	0.0	.	.	Atlas-Indel
MMRN1	22915	hgsc.bcm.edu	37	4	90816715	90816715	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	MMRN1	NM_007351	exon1	c.592delC	p.Q198fs	.	.	76.0	11.0	73.0	0.0	.	.	Atlas-Indel
ZNF630	57232	hgsc.bcm.edu	37	X	47919479	47919479	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	ZNF630	NM_001037735	exon5	c.353delT	p.I118fs	.	.	176.0	11.0	126.0	0.0	.	.	Atlas-Indel
NEK11	79858	hgsc.bcm.edu	37	3	130887702	130887702	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	NEK11	NM_024800	exon13	c.1204delG	p.E402fs	.	.	160.0	10.0	101.0	0.0	.	.	Atlas-Indel
POTEM	641455	hgsc.bcm.edu	37	14	19999340	19999340	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	.	NM_001145442	exon9	c.1355delG	p.S452fs	.	.	259.0	16.0	264.0	0.0	.	.	Atlas-Indel
DGCR8	54487	hgsc.bcm.edu	37	22	20094164	20094164	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	DGCR8	NM_022720	exon11	c.1938delG	p.G646fs	.	.	230.0	14.0	195.0	0.0	.	.	Atlas-Indel
BAI2	576	hgsc.bcm.edu	37	1	32196841	32196841	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	BAI2	NM_001703	exon29	c.3941delA	p.E1314fs	.	.	178.0	12.0	182.0	0.0	.	.	Atlas-Indel
DCAF8L1	139425	hgsc.bcm.edu	37	X	27997984	27997984	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	DCAF8L1	NM_001017930	exon1	c.1469delA	p.H490fs	.	.	166.0	10.0	141.0	0.0	.	.	Atlas-Indel
DFNA5	1687	hgsc.bcm.edu	37	7	24738821	24738821	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	DFNA5	NM_001127453	exon10	c.1316delT	p.L439fs	.	.	306.0	22.0	227.0	0.0	.	.	Atlas-Indel
DTNBP1	84062	hgsc.bcm.edu	37	6	15615504	15615504	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	DTNBP1	NM_183040	exon6	c.483delT	p.N161fs	.	.	251.0	18.0	161.0	0.0	.	.	Atlas-Indel
TAF1	6872	hgsc.bcm.edu	37	X	70597472	70597472	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	TAF1	NM_004606	exon6	c.793delC	p.L265fs	.	.	159.0	10.0	113.0	0.0	.	.	Atlas-Indel
SLC39A7	7922	hgsc.bcm.edu	37	6	33170463	33170463	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	SLC39A7	NM_006979	exon5	c.925delG	p.E309fs	.	.	153.0	11.0	80.0	0.0	.	.	Atlas-Indel
HS3ST4	9951	hgsc.bcm.edu	37	16	25704315	25704315	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	HS3ST4	NM_006040	exon1	c.576delT	p.Y192X	.	.	146.0	10.0	94.0	0.0	.	.	Atlas-Indel
LONP2	83752	hgsc.bcm.edu	37	16	48295434	48295434	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	LONP2	NM_031490	exon5	c.822delG	p.E274fs	.	.	171.0	11.0	127.0	0.0	.	.	Atlas-Indel
TPBG	7162	hgsc.bcm.edu	37	6	83075723	83075723	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	TPBG	NM_001166392	exon2	c.1044delT	p.L348fs	.	.	156.0	10.0	138.0	0.0	.	.	Atlas-Indel
SH3KBP1	30011	hgsc.bcm.edu	37	X	19663542	19663542	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	SH3KBP1	NM_031892	exon7	c.779delC	p.T260fs	.	.	160.0	10.0	89.0	0.0	.	.	Atlas-Indel
SOLH	6650	hgsc.bcm.edu	37	16	597908	597908	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	SOLH	NM_005632	exon4	c.1069delG	p.A357fs	.	.	168.0	11.0	131.0	0.0	.	.	Atlas-Indel
PTPRM	5797	hgsc.bcm.edu	37	18	8248169	8248169	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	PTPRM	NM_001105244	exon17	c.2548delA	p.I850fs	.	.	202.0	14.0	189.0	0.0	.	.	Atlas-Indel
PIAS2	9063	hgsc.bcm.edu	37	18	44444168	44444168	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	PIAS2	NM_173206	exon3	c.544delG	p.A182fs	.	.	167.0	13.0	118.0	0.0	.	.	Atlas-Indel
AGFG1	3267	hgsc.bcm.edu	37	2	228418462	228418462	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	AGFG1	NM_001135187	exon13	c.1645delA	p.T549fs	.	.	182.0	12.0	108.0	0.0	.	.	Atlas-Indel
TBC1D8B	54885	hgsc.bcm.edu	37	X	106096825	106096825	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	TBC1D8B	NM_017752	exon13	c.2197delG	p.E733fs	.	.	201.0	13.0	141.0	0.0	.	.	Atlas-Indel
CIDEC	63924	hgsc.bcm.edu	37	3	9911858	9911858	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	CIDEC	NM_001199623	exon4	c.396delA	p.P132fs	.	.	131.0	13.0	92.0	0.0	.	.	Atlas-Indel
ATF4	468	hgsc.bcm.edu	37	22	39918398	39918398	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	ATF4	NM_001675	exon2	c.846delG	p.L282fs	.	.	221.0	14.0	193.0	0.0	.	.	Atlas-Indel
SEPT12	124404	hgsc.bcm.edu	37	16	4827827	4827827	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	SEPT12	NM_144605	exon10	c.1049delC	p.A350fs	.	.	226.0	16.0	231.0	0.0	.	.	Atlas-Indel
MAP3K13	9175	hgsc.bcm.edu	37	3	185165720	185165720	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	MAP3K13	NM_001242314	exon6	c.994delG	p.E332fs	.	.	163.0	12.0	150.0	0.0	.	.	Atlas-Indel
MADD	8567	hgsc.bcm.edu	37	11	47315481	47315481	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	MADD	NM_130475	exon22	c.3462delG	p.E1154fs	.	.	150.0	12.0	110.0	0.0	.	.	Atlas-Indel
RNASEL	6041	hgsc.bcm.edu	37	1	182555572	182555572	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	RNASEL	NM_021133	exon2	c.371delA	p.Y124fs	.	.	150.0	10.0	74.0	0.0	.	.	Atlas-Indel
SETDB1	9869	hgsc.bcm.edu	37	1	150933041	150933041	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	SETDB1	NM_012432	exon16	c.2502delC	p.G834fs	.	.	154.0	10.0	79.0	0.0	.	.	Atlas-Indel
SCN7A	6332	hgsc.bcm.edu	37	2	167288989	167288989	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	SCN7A	NM_002976	exon15	c.2432delG	p.S811fs	.	.	192.0	14.0	151.0	0.0	.	.	Atlas-Indel
SLC17A1	6568	hgsc.bcm.edu	37	6	25813132	25813132	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	SLC17A1	NM_005074	exon8	c.825delC	p.F275fs	.	.	160.0	10.0	104.0	0.0	.	.	Atlas-Indel
PER3	8863	hgsc.bcm.edu	37	1	7895908	7895908	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	PER3	NM_016831	exon19	c.3273delG	p.Q1091fs	.	.	222.0	15.0	167.0	0.0	.	.	Atlas-Indel
PSMD3	5709	hgsc.bcm.edu	37	17	38137367	38137367	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	PSMD3	NM_002809	exon1	c.143delC	p.T48fs	.	.	175.0	12.0	119.0	0.0	.	.	Atlas-Indel
MTRF1	9617	hgsc.bcm.edu	37	13	41800662	41800662	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	MTRF1	NM_004294	exon8	c.1032delT	p.N344fs	.	.	219.0	14.0	151.0	0.0	.	.	Atlas-Indel
SLFN14	342618	hgsc.bcm.edu	37	17	33884425	33884425	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	SLFN14	NM_001129820	exon1	c.658delG	p.V220fs	.	.	163.0	10.0	142.0	0.0	.	.	Atlas-Indel
PTPRJ	5795	hgsc.bcm.edu	37	11	48149344	48149344	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	PTPRJ	NM_001098503	exon7	c.1105delG	p.V369fs	.	.	104.0	10.0	71.0	0.0	.	.	Atlas-Indel
SEC22C	9117	hgsc.bcm.edu	37	3	42599114	42599114	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	SEC22C	NM_004206	exon5	c.602delT	p.L201fs	.	.	164.0	11.0	180.0	0.0	.	.	Atlas-Indel
SLCO4A1	28231	hgsc.bcm.edu	37	20	61303147	61303147	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	SLCO4A1	NM_016354	exon12	c.2070delG	p.K690fs	.	.	182.0	11.0	134.0	0.0	.	.	Atlas-Indel
MUC5B	727897	hgsc.bcm.edu	37	11	1278487	1278487	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	.	NM_002458	exon40	c.16254delT	p.D5418fs	.	.	208.0	13.0	191.0	0.0	.	.	Atlas-Indel
THNSL1	79896	hgsc.bcm.edu	37	10	25314273	25314273	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	THNSL1	NM_024838	exon3	c.2120delC	p.A707fs	.	.	241.0	15.0	118.0	0.0	.	.	Atlas-Indel
OXCT1	5019	hgsc.bcm.edu	37	5	41862804	41862804	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	OXCT1	NM_000436	exon2	c.128delA	p.Y43fs	.	.	185.0	13.0	172.0	0.0	.	.	Atlas-Indel
CHD8	57680	hgsc.bcm.edu	37	14	21876929	21876929	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	CHD8	NM_001170629	exon11	c.2421delC	p.N807fs	.	.	164.0	11.0	117.0	0.0	.	.	Atlas-Indel
NALCN	259232	hgsc.bcm.edu	37	13	102030966	102030966	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	NALCN	NM_052867	exon4	c.331delG	p.D111fs	.	.	125.0	12.0	88.0	0.0	.	.	Atlas-Indel
ZCCHC7	84186	hgsc.bcm.edu	37	9	37349430	37349430	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	ZCCHC7	NM_032226	exon7	c.1063delC	p.Q355fs	.	.	147.0	11.0	113.0	0.0	.	.	Atlas-Indel
LENG8	114823	hgsc.bcm.edu	37	19	54967951	54967951	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	LENG8	NM_052925	exon11	c.1581delG	p.E527fs	.	.	127.0	10.0	73.0	0.0	.	.	Atlas-Indel
KCNT2	343450	hgsc.bcm.edu	37	1	196227429	196227429	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	KCNT2	NM_198503	exon26	c.3107delT	p.I1036fs	.	.	346.0	22.0	229.0	0.0	.	.	Atlas-Indel
CELA2A	63036	hgsc.bcm.edu	37	1	15783592	15783592	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	CELA2A	NM_033440	exon2	c.51delT	p.C17fs	.	.	238.0	15.0	207.0	0.0	.	.	Atlas-Indel
RBMXL3	139804	hgsc.bcm.edu	37	X	114426075	114426075	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	.	NM_001145346	exon1	c.2070delT	p.S690fs	.	.	174.0	12.0	148.0	0.0	.	.	Atlas-Indel
SNRK	54861	hgsc.bcm.edu	37	3	43389468	43389468	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	SNRK	NM_001100594	exon6	c.1716delG	p.G572fs	.	.	153.0	10.0	129.0	0.0	.	.	Atlas-Indel
TFDP3	51270	hgsc.bcm.edu	37	X	132351743	132351743	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	TFDP3	NM_016521	exon1	c.546delG	p.K182fs	.	.	95.0	10.0	64.0	0.0	.	.	Atlas-Indel
NID2	22795	hgsc.bcm.edu	37	14	52505655	52505655	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	NID2	NM_007361	exon9	c.2068delG	p.G690fs	.	.	155.0	11.0	123.0	0.0	.	.	Atlas-Indel
SAMD3	154075	hgsc.bcm.edu	37	6	130467230	130467230	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	SAMD3	NM_001017373	exon10	c.1121delC	p.S374X	.	.	97.0	10.0	80.0	0.0	.	.	Atlas-Indel
PFKFB4	5210	hgsc.bcm.edu	37	3	48576735	48576735	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	PFKFB4	NM_004567	exon6	c.463delG	p.V155fs	.	.	217.0	14.0	207.0	0.0	.	.	Atlas-Indel
RERE	473	hgsc.bcm.edu	37	1	8421412	8421412	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	RERE	NM_012102	exon19	c.2156delA	p.Q719fs	.	.	136.0	10.0	124.0	0.0	.	.	Atlas-Indel
FARP2	9855	hgsc.bcm.edu	37	2	242373660	242373660	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	FARP2	NM_014808	exon10	c.954delC	p.T318fs	.	.	159.0	12.0	126.0	0.0	.	.	Atlas-Indel
TTLL4	9654	hgsc.bcm.edu	37	2	219602445	219602445	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	TTLL4	NM_014640	exon3	c.45delG	p.Q15fs	.	.	170.0	11.0	123.0	0.0	.	.	Atlas-Indel
DDX42	11325	hgsc.bcm.edu	37	17	61877936	61877936	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	DDX42	NM_203499	exon6	c.579delC	p.T193fs	.	.	191.0	15.0	135.0	0.0	.	.	Atlas-Indel
HTR2C	3358	hgsc.bcm.edu	37	X	114141772	114141772	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	HTR2C	NM_000868	exon6	c.1170delG	p.E390fs	.	.	166.0	11.0	131.0	0.0	.	.	Atlas-Indel
SLFN11	91607	hgsc.bcm.edu	37	17	33680769	33680769	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	SLFN11	NM_152270	exon4	c.1509delC	p.G503fs	.	.	340.0	21.0	361.0	0.0	.	.	Atlas-Indel
SVEP1	79987	hgsc.bcm.edu	37	9	113132231	113132231	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	SVEP1	NM_153366	exon47	c.10667delC	p.S3556fs	.	.	121.0	10.0	125.0	0.0	.	.	Atlas-Indel
DCBLD2	131566	hgsc.bcm.edu	37	3	98544174	98544174	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	DCBLD2	NM_080927	exon4	c.609delG	p.L203fs	.	.	134.0	10.0	100.0	0.0	.	.	Atlas-Indel
ADAMTSL3	57188	hgsc.bcm.edu	37	15	84592778	84592778	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	ADAMTSL3	NM_207517	exon17	c.2109delT	p.C703fs	.	.	172.0	11.0	156.0	0.0	.	.	Atlas-Indel
PDE2A	5138	hgsc.bcm.edu	37	11	72342169	72342169	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	PDE2A	NM_001243784	exon2	c.35delT	p.L12fs	.	.	133.0	10.0	83.0	0.0	.	.	Atlas-Indel
ERG	2078	hgsc.bcm.edu	37	21	39755389	39755389	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	ERG	NM_001136154	exon12	c.1398delT	p.G466fs	.	.	150.0	10.0	131.0	0.0	.	.	Atlas-Indel
GGCT	79017	hgsc.bcm.edu	37	7	30540183	30540183	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	GGCT	NM_024051	exon2	c.257delT	p.M86fs	.	.	133.0	10.0	98.0	0.0	.	.	Atlas-Indel
PBX4	80714	hgsc.bcm.edu	37	19	19681606	19681606	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	PBX4	NM_025245	exon3	c.231delT	p.P77fs	.	.	133.0	10.0	96.0	0.0	.	.	Atlas-Indel
CELSR2	1952	hgsc.bcm.edu	37	1	109810210	109810210	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	CELSR2	NM_001408	exon16	c.6053delT	p.L2018fs	.	.	145.0	11.0	157.0	0.0	.	.	Atlas-Indel
CLASP1	23332	hgsc.bcm.edu	37	2	122182819	122182819	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	CLASP1	NM_001142273	exon23	c.2133delC	p.G711fs	.	.	144.0	10.0	104.0	0.0	.	.	Atlas-Indel
MED14	9282	hgsc.bcm.edu	37	X	40562784	40562784	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	MED14	NM_004229	exon11	c.1324delA	p.I442fs	.	.	199.0	14.0	132.0	0.0	.	.	Atlas-Indel
MAP7D3	79649	hgsc.bcm.edu	37	X	135323367	135323367	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	MAP7D3	NM_024597	exon5	c.488delG	p.R163fs	.	.	157.0	10.0	146.0	0.0	.	.	Atlas-Indel
PADI3	51702	hgsc.bcm.edu	37	1	17593227	17593227	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	PADI3	NM_016233	exon5	c.421delT	p.W141fs	.	.	184.0	12.0	151.0	0.0	.	.	Atlas-Indel
RNF123	63891	hgsc.bcm.edu	37	3	49740924	49740924	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	RNF123	NM_022064	exon21	c.1814delT	p.L605fs	.	.	241.0	20.0	208.0	0.0	.	.	Atlas-Indel
NWD1	284434	hgsc.bcm.edu	37	19	16908642	16908642	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	NWD1	NM_001007525	exon16	c.3403delG	p.V1135fs	.	.	162.0	15.0	153.0	0.0	.	.	Atlas-Indel
CENPE	1062	hgsc.bcm.edu	37	4	104095902	104095902	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	CENPE	NM_001813	exon16	c.1639delG	p.D547fs	.	.	235.0	18.0	198.0	0.0	.	.	Atlas-Indel
HKDC1	80201	hgsc.bcm.edu	37	10	71017124	71017124	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	HKDC1	NM_025130	exon14	c.1973delT	p.V658fs	.	.	183.0	12.0	149.0	0.0	.	.	Atlas-Indel
FST	10468	hgsc.bcm.edu	37	5	52779494	52779494	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	FST	NM_006350	exon3	c.437delT	p.L146fs	.	.	213.0	15.0	136.0	0.0	.	.	Atlas-Indel
ATP8A1	10396	hgsc.bcm.edu	37	4	42588395	42588395	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	ATP8A1	NM_006095	exon9	c.694delG	p.V232fs	.	.	179.0	11.0	182.0	0.0	.	.	Atlas-Indel
SUPT20HL2	170067	hgsc.bcm.edu	37	X	24330071	24330071	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	.	NM_001136233	exon1	c.1363delG	p.G455fs	.	.	111.0	12.0	91.0	0.0	.	.	Atlas-Indel
LAMA2	3908	hgsc.bcm.edu	37	6	129826417	129826417	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	LAMA2	NM_000426	exon61	c.8619delC	p.P2873fs	.	.	173.0	13.0	187.0	0.0	.	.	Atlas-Indel
TRAK1	22906	hgsc.bcm.edu	37	3	42166974	42166974	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	TRAK1	NM_001042646	exon2	c.153delG	p.L51fs	.	.	159.0	10.0	111.0	0.0	.	.	Atlas-Indel
SLFN12L	100506736	hgsc.bcm.edu	37	17	33807084	33807084	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	SLFN12L	NM_001195790	exon2	c.146delT	p.M49fs	.	.	198.0	16.0	168.0	0.0	.	.	Atlas-Indel
LY86	9450	hgsc.bcm.edu	37	6	6588976	6588976	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	LY86	NM_004271	exon1	c.8delG	p.G3fs	.	.	135.0	10.0	55.0	0.0	.	.	Atlas-Indel
PRH1	5554	hgsc.bcm.edu	37	12	11035175	11035175	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	.	NM_006250	exon3	c.224delA	p.Q75fs	.	.	214.0	14.0	220.0	0.0	.	.	Atlas-Indel
RERE	473	hgsc.bcm.edu	37	1	8418658	8418658	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	RERE	NM_012102	exon21	c.3938delA	p.E1313fs	.	.	131.0	11.0	105.0	0.0	.	.	Atlas-Indel
NFATC1	4772	hgsc.bcm.edu	37	18	77193695	77193695	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	NFATC1	NM_006162	exon3	c.1342delC	p.R448fs	.	.	155.0	10.0	99.0	0.0	.	.	Atlas-Indel
COPS6	10980	hgsc.bcm.edu	37	7	99687281	99687281	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	COPS6	NM_006833	exon3	c.245delA	p.E82fs	.	.	199.0	12.0	199.0	0.0	.	.	Atlas-Indel
MAP3K1	4214	hgsc.bcm.edu	37	5	56170970	56170970	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	MAP3K1	NM_005921	exon10	c.1797delT	p.N599fs	.	.	193.0	14.0	197.0	0.0	.	.	Atlas-Indel
UNK	85451	hgsc.bcm.edu	37	17	73818612	73818612	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	UNK	NM_001080419	exon14	c.1891delT	p.S631fs	.	.	152.0	10.0	127.0	0.0	.	.	Atlas-Indel
ALS2CL	259173	hgsc.bcm.edu	37	3	46724741	46724741	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	ALS2CL	NM_001190707	exon10	c.989delC	p.A330fs	.	.	144.0	10.0	114.0	0.0	.	.	Atlas-Indel
SLC2A2	6514	hgsc.bcm.edu	37	3	170716076	170716076	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	SLC2A2	NM_000340	exon10	c.1281delC	p.F427fs	.	.	174.0	11.0	156.0	0.0	.	.	Atlas-Indel
SOX15	6665	hgsc.bcm.edu	37	17	7492683	7492683	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	SOX15	NM_006942	exon1	c.313delC	p.L105fs	.	.	158.0	11.0	126.0	0.0	.	.	Atlas-Indel
OTOA	146183	hgsc.bcm.edu	37	16	21742178	21742178	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	OTOA	NM_144672	exon20	c.2227delG	p.A743fs	.	.	151.0	10.0	153.0	0.0	.	.	Atlas-Indel
SCML1	6322	hgsc.bcm.edu	37	X	17763578	17763578	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	SCML1	NM_001037540	exon3	c.35delT	p.I12fs	.	.	152.0	12.0	138.0	0.0	.	.	Atlas-Indel
ATR	545	hgsc.bcm.edu	37	3	142178110	142178110	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	ATR	NM_001184	exon43	c.7309delC	p.H2437fs	.	.	139.0	10.0	112.0	0.0	.	.	Atlas-Indel
GALNT4	8693	hgsc.bcm.edu	37	12	89918093	89918093	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	.	NM_003774	exon1	c.235delA	p.K79fs	.	.	161.0	10.0	144.0	0.0	.	.	Atlas-Indel
POU5F2	134187	hgsc.bcm.edu	37	5	93076558	93076558	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	.	NM_153216	exon1	c.713delA	p.Q238fs	.	.	221.0	14.0	201.0	0.0	.	.	Atlas-Indel
LRFN4	78999	hgsc.bcm.edu	37	11	66627324	66627324	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	LRFN4	NM_024036	exon2	c.1565delT	p.V522fs	.	.	124.0	11.0	67.0	0.0	.	.	Atlas-Indel
TNC	3371	hgsc.bcm.edu	37	9	117848394	117848394	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	TNC	NM_002160	exon3	c.1617delG	p.Q539fs	.	.	161.0	10.0	172.0	0.0	.	.	Atlas-Indel
CCDC80	151887	hgsc.bcm.edu	37	3	112335650	112335650	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	CCDC80	NM_199512	exon5	c.2229delC	p.F743fs	.	.	158.0	11.0	119.0	0.0	.	.	Atlas-Indel
UFL1	23376	hgsc.bcm.edu	37	6	96990799	96990799	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	.	NM_015323	exon12	c.1308delT	p.G436fs	.	.	232.0	14.0	223.0	0.0	.	.	Atlas-Indel
DST	667	hgsc.bcm.edu	37	6	56434717	56434717	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	DST	NM_015548	exon35	c.5947delG	p.V1983fs	.	.	177.0	12.0	87.0	0.0	.	.	Atlas-Indel
PARG	8505	hgsc.bcm.edu	37	10	51077558	51077558	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	PARG	NM_003631	exon10	c.2033delC	p.T678fs	.	.	212.0	13.0	179.0	0.0	.	.	Atlas-Indel
CSGALNACT1	55790	hgsc.bcm.edu	37	8	19263296	19263296	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	CSGALNACT1	NM_018371	exon10	c.1595delC	p.T532fs	.	.	168.0	11.0	151.0	0.0	.	.	Atlas-Indel
CDH20	28316	hgsc.bcm.edu	37	18	59167713	59167713	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	CDH20	NM_031891	exon3	c.638delA	p.Y213fs	.	.	163.0	11.0	106.0	0.0	.	.	Atlas-Indel
EIF2A	83939	hgsc.bcm.edu	37	3	150299510	150299510	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	EIF2A	NM_032025	exon12	c.1602delC	p.D534fs	.	.	184.0	13.0	173.0	0.0	.	.	Atlas-Indel
PRRT4	401399	hgsc.bcm.edu	37	7	127999861	127999861	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	.	NM_001174164	exon3	c.186delA	p.G62fs	.	.	182.0	11.0	158.0	0.0	.	.	Atlas-Indel
PODNL1	79883	hgsc.bcm.edu	37	19	14044198	14044198	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	PODNL1	NM_024825	exon8	c.860delG	p.R287fs	.	.	168.0	12.0	158.0	0.0	.	.	Atlas-Indel
PRRC2C	23215	hgsc.bcm.edu	37	1	171483721	171483721	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	.	NM_015172	exon4	c.330delT	p.A110fs	.	.	312.0	21.0	157.0	0.0	.	.	Atlas-Indel
BACE1	23621	hgsc.bcm.edu	37	11	117186306	117186306	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	BACE1	NM_138972	exon1	c.207delC	p.G69fs	.	.	166.0	12.0	140.0	0.0	.	.	Atlas-Indel
IQCG	84223	hgsc.bcm.edu	37	3	197659165	197659165	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	IQCG	NM_032263	exon6	c.525delC	p.F175fs	.	.	160.0	11.0	113.0	0.0	.	.	Atlas-Indel
SF3A1	10291	hgsc.bcm.edu	37	22	30733103	30733103	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	SF3A1	NM_005877	exon13	c.2019delA	p.P673fs	.	.	166.0	10.0	113.0	0.0	.	.	Atlas-Indel
RRH	10692	hgsc.bcm.edu	37	4	110758642	110758642	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	RRH	NM_006583	exon5	c.600delG	p.V200fs	.	.	173.0	11.0	198.0	0.0	.	.	Atlas-Indel
HRNR	388697	hgsc.bcm.edu	37	1	152189055	152189055	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	HRNR	NM_001009931	exon3	c.5051delG	p.R1684fs	.	.	226.0	18.0	97.0	0.0	.	.	Atlas-Indel
UGGT1	56886	hgsc.bcm.edu	37	2	128900693	128900693	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	UGGT1	NM_020120	exon17	c.1744delG	p.E582fs	.	.	129.0	10.0	80.0	0.0	.	.	Atlas-Indel
ZNF814	730051	hgsc.bcm.edu	37	19	58385708	58385708	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	.	NM_001144989	exon3	c.1051delC	p.H351fs	.	.	296.0	19.0	197.0	0.0	.	.	Atlas-Indel
NEMF	9147	hgsc.bcm.edu	37	14	50295460	50295460	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	NEMF	NM_004713	exon14	c.1299delT	p.N433fs	.	.	148.0	10.0	135.0	0.0	.	.	Atlas-Indel
PPWD1	23398	hgsc.bcm.edu	37	5	64865782	64865782	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	PPWD1	NM_015342	exon4	c.477delG	p.V159fs	.	.	164.0	10.0	110.0	0.0	.	.	Atlas-Indel
GPX7	2882	hgsc.bcm.edu	37	1	53074002	53074002	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	GPX7	NM_015696	exon3	c.468delA	p.V156fs	.	.	103.0	10.0	77.0	0.0	.	.	Atlas-Indel
BUB1	699	hgsc.bcm.edu	37	2	111406915	111406915	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	BUB1	NM_004336	exon19	c.2244delC	p.F748fs	.	.	238.0	16.0	163.0	0.0	.	.	Atlas-Indel
TBC1D20	128637	hgsc.bcm.edu	37	20	428697	428697	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	TBC1D20	NM_144628	exon2	c.93delG	p.K31fs	.	.	166.0	11.0	125.0	0.0	.	.	Atlas-Indel
ACVR2B	93	hgsc.bcm.edu	37	3	38519754	38519754	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	ACVR2B	NM_001106	exon4	c.492delG	p.K164fs	.	.	146.0	12.0	100.0	0.0	.	.	Atlas-Indel
TMTC4	84899	hgsc.bcm.edu	37	13	101278382	101278382	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	TMTC4	NM_032813	exon13	c.1530delC	p.N510fs	.	.	320.0	23.0	264.0	0.0	.	.	Atlas-Indel
DEPDC1B	55789	hgsc.bcm.edu	37	5	59893603	59893603	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	DEPDC1B	NM_018369	exon11	c.1568delG	p.R523fs	.	.	164.0	11.0	108.0	0.0	.	.	Atlas-Indel
DOT1L	84444	hgsc.bcm.edu	37	19	2191141	2191141	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	DOT1L	NM_032482	exon5	c.394delT	p.S132fs	.	.	159.0	10.0	157.0	0.0	.	.	Atlas-Indel
GPATCH1	55094	hgsc.bcm.edu	37	19	33605287	33605287	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	GPATCH1	NM_018025	exon15	c.2157delC	p.N719fs	.	.	157.0	10.0	126.0	0.0	.	.	Atlas-Indel
PCDHB12	56124	hgsc.bcm.edu	37	5	140590838	140590838	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	PCDHB12	NM_018932	exon1	c.2358delT	p.N786fs	.	.	194.0	12.0	138.0	0.0	.	.	Atlas-Indel
FOSL2	2355	hgsc.bcm.edu	37	2	28635091	28635091	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	FOSL2	NM_005253	exon4	c.756delT	p.A252fs	.	.	137.0	11.0	93.0	0.0	.	.	Atlas-Indel
C5orf42	65250	hgsc.bcm.edu	37	5	37108533	37108533	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	C5orf42	NM_023073	exon51	c.9280delC	p.H3094fs	.	.	162.0	13.0	121.0	0.0	.	.	Atlas-Indel
SULT2B1	6820	hgsc.bcm.edu	37	19	49079181	49079181	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	SULT2B1	NM_004605	exon1	c.9delT	p.S3fs	.	.	119.0	10.0	111.0	0.0	.	.	Atlas-Indel
C22orf28	51493	hgsc.bcm.edu	37	22	32784009	32784009	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	C22orf28	NM_014306	exon12	c.1489delC	p.L497X	.	.	198.0	12.0	191.0	0.0	.	.	Atlas-Indel
STPG1	90529	hgsc.bcm.edu	37	1	24696176	24696176	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	.	NM_001199012	exon7	c.726delG	p.K242fs	.	.	157.0	10.0	107.0	0.0	.	.	Atlas-Indel
SDC3	9672	hgsc.bcm.edu	37	1	31351530	31351530	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	SDC3	NM_014654	exon2	c.197delA	p.D66fs	.	.	161.0	10.0	141.0	0.0	.	.	Atlas-Indel
APOA2	336	hgsc.bcm.edu	37	1	161192790	161192790	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	APOA2	NM_001643	exon3	c.104delC	p.S35fs	.	.	161.0	10.0	89.0	0.0	.	.	Atlas-Indel
ANKRD12	23253	hgsc.bcm.edu	37	18	9279637	9279637	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	ANKRD12	NM_015208	exon12	c.5997delA	p.K1999fs	.	.	180.0	12.0	145.0	0.0	.	.	Atlas-Indel
KLHL14	57565	hgsc.bcm.edu	37	18	30349862	30349862	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	KLHL14	NM_020805	exon2	c.694delG	p.V232fs	.	.	191.0	12.0	159.0	0.0	.	.	Atlas-Indel
ATR	545	hgsc.bcm.edu	37	3	142281476	142281476	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	ATR	NM_001184	exon4	c.769delC	p.Q257fs	.	.	170.0	11.0	128.0	0.0	.	.	Atlas-Indel
OSBP	5007	hgsc.bcm.edu	37	11	59345771	59345771	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	OSBP	NM_002556	exon12	c.1912delG	p.V638fs	.	.	235.0	15.0	212.0	0.0	.	.	Atlas-Indel
PDE7A	5150	hgsc.bcm.edu	37	8	66753692	66753692	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	PDE7A	NM_001242318	exon1	c.53delA	p.Q18fs	.	.	232.0	14.0	111.0	0.0	.	.	Atlas-Indel
CHM	1121	hgsc.bcm.edu	37	X	85218838	85218838	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	CHM	NM_000390	exon5	c.535delG	p.E179fs	.	.	182.0	11.0	139.0	0.0	.	.	Atlas-Indel
KIF21B	23046	hgsc.bcm.edu	37	1	200944033	200944033	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	KIF21B	NM_001252102	exon34	c.4624delA	p.N1542fs	.	.	164.0	10.0	110.0	0.0	.	.	Atlas-Indel
ZNF214	7761	hgsc.bcm.edu	37	11	7022374	7022374	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	ZNF214	NM_013249	exon3	c.541delG	p.E181fs	.	.	134.0	10.0	83.0	0.0	.	.	Atlas-Indel
HIST1H2AM	8336	hgsc.bcm.edu	37	6	27860701	27860701	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	HIST1H2AM	NM_003514	exon1	c.228delG	p.K76fs	.	.	414.0	26.0	200.0	0.0	.	.	Atlas-Indel
HECTD1	25831	hgsc.bcm.edu	37	14	31617938	31617938	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	HECTD1	NM_015382	exon15	c.2486delC	p.T829fs	.	.	142.0	10.0	131.0	0.0	.	.	Atlas-Indel
MINK1	50488	hgsc.bcm.edu	37	17	4794826	4794826	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	MINK1	NM_170663	exon16	c.1815delG	p.Q605fs	.	.	153.0	10.0	176.0	0.0	.	.	Atlas-Indel
RELA	5970	hgsc.bcm.edu	37	11	65422151	65422151	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	RELA	NM_021975	exon11	c.1355delC	p.A452fs	.	.	119.0	10.0	84.0	0.0	.	.	Atlas-Indel
ITM2C	81618	hgsc.bcm.edu	37	2	231741644	231741644	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	ITM2C	NM_030926	exon4	c.522delG	p.L174fs	.	.	178.0	11.0	124.0	0.0	.	.	Atlas-Indel
GUSB	2990	hgsc.bcm.edu	37	7	65444761	65444761	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	GUSB	NM_000181	exon3	c.535delA	p.T179fs	.	.	121.0	10.0	80.0	0.0	.	.	Atlas-Indel
EFCAB13	124989	hgsc.bcm.edu	37	17	45468832	45468832	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	.	NM_152347	exon15	c.1611delT	p.D537fs	.	.	161.0	10.0	134.0	0.0	.	.	Atlas-Indel
PDGFA	5154	hgsc.bcm.edu	37	7	540104	540104	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	PDGFA	NM_002607	exon6	c.614delG	p.R205fs	.	.	165.0	11.0	133.0	0.0	.	.	Atlas-Indel
ECM1	1893	hgsc.bcm.edu	37	1	150484838	150484838	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	ECM1	NM_001202858	exon8	c.1174delA	p.T392fs	.	.	226.0	14.0	99.0	0.0	.	.	Atlas-Indel
AASS	10157	hgsc.bcm.edu	37	7	121758669	121758669	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	AASS	NM_005763	exon5	c.489delA	p.L163fs	.	.	203.0	14.0	167.0	0.0	.	.	Atlas-Indel
SAMD7	344658	hgsc.bcm.edu	37	3	169644580	169644580	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	SAMD7	NM_182610	exon6	c.529delT	p.W177fs	.	.	169.0	12.0	140.0	0.0	.	.	Atlas-Indel
SLX1B	79008	hgsc.bcm.edu	37	16	29466211	29466211	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	.	NM_024044	exon1	c.147delC	p.R49fs	.	.	133.0	11.0	89.0	0.0	.	.	Atlas-Indel
CHD5	26038	hgsc.bcm.edu	37	1	6202277	6202277	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	CHD5	NM_015557	exon15	c.2348delA	p.D783fs	.	.	158.0	10.0	148.0	0.0	.	.	Atlas-Indel
ARAP1	116985	hgsc.bcm.edu	37	11	72437746	72437746	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	ARAP1	NM_001040118	exon3	c.429delG	p.P143fs	.	.	135.0	11.0	86.0	0.0	.	.	Atlas-Indel
UBE2K	3093	hgsc.bcm.edu	37	4	39779392	39779392	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	UBE2K	NM_005339	exon6	c.489delC	p.T163fs	.	.	178.0	12.0	139.0	0.0	.	.	Atlas-Indel
COL6A1	1291	hgsc.bcm.edu	37	21	47418082	47418082	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	COL6A1	NM_001848	exon23	c.1571delT	p.F524fs	.	.	140.0	10.0	89.0	0.0	.	.	Atlas-Indel
EP300	2033	hgsc.bcm.edu	37	22	41574679	41574679	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	EP300	NM_001429	exon31	c.6963delG	p.Q2321fs	.	.	154.0	11.0	116.0	0.0	.	.	Atlas-Indel
SF3B4	10262	hgsc.bcm.edu	37	1	149895562	149895562	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	SF3B4	NM_005850	exon6	c.1148delA	p.H383fs	.	.	180.0	11.0	86.0	0.0	.	.	Atlas-Indel
MTHFSD	64779	hgsc.bcm.edu	37	16	86565823	86565823	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	MTHFSD	NM_001159377	exon8	c.947delA	p.D316fs	.	.	159.0	11.0	106.0	0.0	.	.	Atlas-Indel
KLHDC4	54758	hgsc.bcm.edu	37	16	87788891	87788891	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	KLHDC4	NM_001184856	exon4	c.279delG	p.L93fs	.	.	166.0	11.0	152.0	0.0	.	.	Atlas-Indel
MYO7B	4648	hgsc.bcm.edu	37	2	128384760	128384760	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	MYO7B	NM_001080527	exon32	c.4256delG	p.G1419fs	.	.	156.0	10.0	131.0	0.0	.	.	Atlas-Indel
SLC35A4	113829	hgsc.bcm.edu	37	5	139946770	139946770	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	SLC35A4	NM_080670	exon3	c.15delT	p.D5fs	.	.	159.0	12.0	120.0	0.0	.	.	Atlas-Indel
USPL1	10208	hgsc.bcm.edu	37	13	31233407	31233407	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	USPL1	NM_005800	exon9	c.3192delG	p.E1064fs	.	.	143.0	11.0	92.0	0.0	.	.	Atlas-Indel
ANKFN1	162282	hgsc.bcm.edu	37	17	54428181	54428181	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	ANKFN1	NM_153228	exon4	c.251delC	p.S84X	.	.	116.0	10.0	89.0	0.0	.	.	Atlas-Indel
LRRC2	79442	hgsc.bcm.edu	37	3	46580564	46580564	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	LRRC2	NM_024512	exon4	c.462delC	p.N154fs	.	.	162.0	10.0	118.0	0.0	.	.	Atlas-Indel
TMX3	54495	hgsc.bcm.edu	37	18	66367677	66367677	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	TMX3	NM_019022	exon6	c.358delG	p.D120fs	.	.	187.0	13.0	130.0	0.0	.	.	Atlas-Indel
KIAA1468	57614	hgsc.bcm.edu	37	18	59936142	59936142	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	KIAA1468	NM_020854	exon20	c.2720delT	p.V907fs	.	.	211.0	18.0	170.0	0.0	.	.	Atlas-Indel
OR2T8	343172	hgsc.bcm.edu	37	1	248084801	248084801	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	OR2T8	NM_001005522	exon1	c.481delA	p.T161fs	.	.	189.0	12.0	118.0	0.0	.	.	Atlas-Indel
TTC39C	125488	hgsc.bcm.edu	37	18	21662977	21662977	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	TTC39C	NM_001135993	exon6	c.915delT	p.L305fs	.	.	183.0	11.0	112.0	0.0	.	.	Atlas-Indel
SEMA3C	10512	hgsc.bcm.edu	37	7	80447658	80447658	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	SEMA3C	NM_006379	exon5	c.405delC	p.F135fs	.	.	167.0	11.0	162.0	0.0	.	.	Atlas-Indel
MYSM1	114803	hgsc.bcm.edu	37	1	59156023	59156023	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	MYSM1	NM_001085487	exon4	c.286delT	p.Y96fs	.	.	169.0	11.0	179.0	0.0	.	.	Atlas-Indel
SAAL1	113174	hgsc.bcm.edu	37	11	18111818	18111818	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	SAAL1	NM_138421	exon6	c.494delC	p.S165fs	.	.	133.0	10.0	101.0	0.0	.	.	Atlas-Indel
ADAM22	53616	hgsc.bcm.edu	37	7	87808298	87808298	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	ADAM22	NM_021723	exon27	c.2348delC	p.S783fs	.	.	240.0	16.0	188.0	0.0	.	.	Atlas-Indel
AP1G2	8906	hgsc.bcm.edu	37	14	24032654	24032654	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	AP1G2	NM_003917	exon14	c.1346delC	p.A449fs	.	.	151.0	11.0	166.0	0.0	.	.	Atlas-Indel
IWS1	55677	hgsc.bcm.edu	37	2	128252502	128252502	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	IWS1	NM_017969	exon8	c.1746delG	p.K582fs	.	.	165.0	10.0	140.0	0.0	.	.	Atlas-Indel
NPAS1	4861	hgsc.bcm.edu	37	19	47546077	47546077	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	NPAS1	NM_002517	exon10	c.1226delA	p.E409fs	.	.	201.0	13.0	180.0	0.0	.	.	Atlas-Indel
CPLX2	10814	hgsc.bcm.edu	37	5	175305939	175305939	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	CPLX2	NM_006650	exon4	c.59delT	p.L20fs	.	.	194.0	13.0	162.0	0.0	.	.	Atlas-Indel
C6orf47	57827	hgsc.bcm.edu	37	6	31627213	31627213	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	C6orf47	NM_021184	exon1	c.513delC	p.G171fs	.	.	156.0	10.0	105.0	0.0	.	.	Atlas-Indel
MYLK2	85366	hgsc.bcm.edu	37	20	30419520	30419520	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	MYLK2	NM_033118	exon11	c.1438delT	p.S480fs	.	.	145.0	11.0	89.0	0.0	.	.	Atlas-Indel
WDR89	112840	hgsc.bcm.edu	37	14	64066253	64066253	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	WDR89	NM_080666	exon3	c.409delG	p.V137fs	.	.	150.0	10.0	153.0	0.0	.	.	Atlas-Indel
NOP58	51602	hgsc.bcm.edu	37	2	203168133	203168133	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	NOP58	NM_015934	exon15	c.1563delG	p.K521fs	.	.	271.0	19.0	191.0	0.0	.	.	Atlas-Indel
RGS7	6000	hgsc.bcm.edu	37	1	241262025	241262025	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	RGS7	NM_002924	exon3	c.117delT	p.N39fs	.	.	107.0	11.0	52.0	0.0	.	.	Atlas-Indel
CNGB1	1258	hgsc.bcm.edu	37	16	57949179	57949179	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	CNGB1	NM_001297	exon23	c.2279delT	p.L760fs	.	.	133.0	10.0	134.0	0.0	.	.	Atlas-Indel
VPS13D	55187	hgsc.bcm.edu	37	1	12339690	12339690	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	VPS13D	NM_015378	exon20	c.4584delA	p.K1528fs	.	.	166.0	12.0	163.0	0.0	.	.	Atlas-Indel
TMPRSS7	344805	hgsc.bcm.edu	37	3	111780666	111780666	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	TMPRSS7	NM_001042575	exon9	c.964delA	p.I322fs	.	.	172.0	12.0	139.0	0.0	.	.	Atlas-Indel
GPR119	139760	hgsc.bcm.edu	37	X	129518461	129518461	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	GPR119	NM_178471	exon1	c.962delG	p.S321fs	.	.	127.0	10.0	78.0	0.0	.	.	Atlas-Indel
XDH	7498	hgsc.bcm.edu	37	2	31571774	31571774	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	XDH	NM_000379	exon27	c.3043delC	p.L1015X	.	.	173.0	11.0	90.0	0.0	.	.	Atlas-Indel
PIH1D2	120379	hgsc.bcm.edu	37	11	111941932	111941932	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	PIH1D2	NM_001082619	exon4	c.378delT	p.N126fs	.	.	222.0	14.0	168.0	0.0	.	.	Atlas-Indel
ATXN1	6310	hgsc.bcm.edu	37	6	16327684	16327684	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	ATXN1	NM_001128164	exon7	c.859delT	p.S287fs	.	.	334.0	21.0	181.0	0.0	.	.	Atlas-Indel
TTC38	55020	hgsc.bcm.edu	37	22	46671215	46671215	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	TTC38	NM_017931	exon5	c.435delG	p.L145fs	.	.	162.0	10.0	116.0	0.0	.	.	Atlas-Indel
UIMC1	51720	hgsc.bcm.edu	37	5	176409596	176409596	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	UIMC1	NM_016290	exon2	c.22delG	p.V8fs	.	.	236.0	15.0	168.0	0.0	.	.	Atlas-Indel
UBE2C	11065	hgsc.bcm.edu	37	20	44444540	44444540	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	UBE2C	NM_007019	exon5	c.468delG	p.W156X	.	.	105.0	10.0	82.0	0.0	.	.	Atlas-Indel
COPB2	9276	hgsc.bcm.edu	37	3	139096994	139096994	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	COPB2	NM_004766	exon5	c.394delT	p.W132fs	.	.	128.0	10.0	111.0	0.0	.	.	Atlas-Indel
ATP10D	57205	hgsc.bcm.edu	37	4	47574996	47574996	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	ATP10D	NM_020453	exon18	c.3347delA	p.Y1116fs	.	.	206.0	14.0	159.0	0.0	.	.	Atlas-Indel
LTF	4057	hgsc.bcm.edu	37	3	46479553	46479553	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	LTF	NM_002343	exon16	c.1977delC	p.N659fs	.	.	193.0	12.0	136.0	0.0	.	.	Atlas-Indel
LRRC36	55282	hgsc.bcm.edu	37	16	67381385	67381385	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	LRRC36	NM_001161575	exon1	c.15delG	p.R5fs	.	.	152.0	10.0	125.0	0.0	.	.	Atlas-Indel
GPR180	160897	hgsc.bcm.edu	37	13	95278272	95278272	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	GPR180	NM_180989	exon8	c.1138delA	p.I380fs	.	.	160.0	12.0	78.0	0.0	.	.	Atlas-Indel
GPATCH8	23131	hgsc.bcm.edu	37	17	42478249	42478249	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	GPATCH8	NM_001002909	exon8	c.1197delA	p.P399fs	.	.	122.0	10.0	110.0	0.0	.	.	Atlas-Indel
SAMD8	142891	hgsc.bcm.edu	37	10	76936360	76936360	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	SAMD8	NM_001174156	exon6	c.1157delC	p.S386fs	.	.	230.0	18.0	191.0	0.0	.	.	Atlas-Indel
SLCO1B3	28234	hgsc.bcm.edu	37	12	21032426	21032426	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	SLCO1B3	NM_019844	exon11	c.1191delT	p.I397fs	.	.	134.0	17.0	139.0	0.0	.	.	Atlas-Indel
ANK2	287	hgsc.bcm.edu	37	4	114278579	114278579	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	ANK2	NM_001148	exon38	c.8804delC	p.S2935fs	.	.	166.0	10.0	130.0	0.0	.	.	Atlas-Indel
PDE4D	5144	hgsc.bcm.edu	37	5	58271490	58271490	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	PDE4D	NM_001104631	exon14	c.2008delT	p.S670fs	.	.	180.0	11.0	142.0	0.0	.	.	Atlas-Indel
HOXB2	3212	hgsc.bcm.edu	37	17	46620942	46620942	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	HOXB2	NM_002145	exon2	c.560delT	p.V187fs	.	.	181.0	11.0	218.0	0.0	.	.	Atlas-Indel
PCCB	5096	hgsc.bcm.edu	37	3	135979364	135979364	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	PCCB	NM_001178014	exon5	c.475delC	p.Q159fs	.	.	152.0	10.0	122.0	0.0	.	.	Atlas-Indel
PAPSS1	9061	hgsc.bcm.edu	37	4	108615045	108615045	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	PAPSS1	NM_005443	exon3	c.294delT	p.N98fs	.	.	107.0	11.0	102.0	0.0	.	.	Atlas-Indel
FAM135A	57579	hgsc.bcm.edu	37	6	71191751	71191751	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	FAM135A	NM_001162529	exon8	c.716delG	p.R239fs	.	.	155.0	11.0	142.0	0.0	.	.	Atlas-Indel
THSD7A	221981	hgsc.bcm.edu	37	7	11632925	11632925	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	THSD7A	NM_015204	exon3	c.1228delG	p.E410fs	.	.	124.0	10.0	96.0	0.0	.	.	Atlas-Indel
DDX52	11056	hgsc.bcm.edu	37	17	35988606	35988606	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	DDX52	NM_007010	exon6	c.859delG	p.D287fs	.	.	142.0	11.0	102.0	0.0	.	.	Atlas-Indel
CMBL	134147	hgsc.bcm.edu	37	5	10282342	10282342	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	CMBL	NM_138809	exon5	c.526delG	p.A176fs	.	.	178.0	13.0	109.0	0.0	.	.	Atlas-Indel
KCNAB1	7881	hgsc.bcm.edu	37	3	155838473	155838473	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	KCNAB1	NM_172160	exon1	c.72delT	p.S24fs	.	.	128.0	26.0	109.0	0.0	.	.	Atlas-Indel
LRP1B	53353	hgsc.bcm.edu	37	2	141272298	141272298	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	LRP1B	NM_018557	exon51	c.8194delT	p.C2732fs	.	.	194.0	12.0	145.0	0.0	.	.	Atlas-Indel
CAMK1D	57118	hgsc.bcm.edu	37	10	12856212	12856212	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	CAMK1D	NM_153498	exon7	c.659delC	p.P220fs	.	.	191.0	13.0	159.0	0.0	.	.	Atlas-Indel
LINGO4	339398	hgsc.bcm.edu	37	1	151773948	151773948	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	LINGO4	NM_001004432	exon2	c.1234delC	p.P412fs	.	.	162.0	10.0	91.0	0.0	.	.	Atlas-Indel
ITGB2	3689	hgsc.bcm.edu	37	21	46309403	46309403	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	ITGB2	NM_000211	exon13	c.1666delC	p.L556fs	.	.	174.0	11.0	159.0	0.0	.	.	Atlas-Indel
CEP41	95681	hgsc.bcm.edu	37	7	130039927	130039927	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	.	NM_018718	exon10	c.927delG	p.K309fs	.	.	115.0	11.0	62.0	0.0	.	.	Atlas-Indel
ELOVL4	6785	hgsc.bcm.edu	37	6	80626356	80626356	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	ELOVL4	NM_022726	exon6	c.915delG	p.K305fs	.	.	228.0	14.0	225.0	0.0	.	.	Atlas-Indel
CORO7-PAM16	100529144	hgsc.bcm.edu	37	16	4391385	4391385	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	.	NM_001201479	exon29	c.2979delT	p.P993fs	.	.	202.0	15.0	194.0	0.0	.	.	Atlas-Indel
FAM65B	9750	hgsc.bcm.edu	37	6	24843580	24843580	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	FAM65B	NM_014722	exon14	c.1431delT	p.G477fs	.	.	177.0	11.0	102.0	0.0	.	.	Atlas-Indel
SPECC1	92521	hgsc.bcm.edu	37	17	19999991	19999991	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	SPECC1	NM_001033553	exon2	c.26delA	p.N9fs	.	.	158.0	11.0	168.0	0.0	.	.	Atlas-Indel
ZNF484	83744	hgsc.bcm.edu	37	9	95609839	95609839	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	ZNF484	NM_001261458	exon4	c.1237delC	p.P413fs	.	.	146.0	11.0	98.0	0.0	.	.	Atlas-Indel
KCTD13	253980	hgsc.bcm.edu	37	16	29922397	29922397	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	KCTD13	NM_178863	exon5	c.656delA	p.D219fs	.	.	170.0	12.0	144.0	0.0	.	.	Atlas-Indel
SLC12A9	56996	hgsc.bcm.edu	37	7	100459490	100459490	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	SLC12A9	NM_001267812	exon12	c.1667delA	p.K556fs	.	.	165.0	12.0	135.0	0.0	.	.	Atlas-Indel
GPR64	10149	hgsc.bcm.edu	37	X	19026119	19026119	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	GPR64	NM_001184834	exon19	c.1546delG	p.E516fs	.	.	126.0	11.0	80.0	0.0	.	.	Atlas-Indel
UBR1	197131	hgsc.bcm.edu	37	15	43350584	43350584	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	UBR1	NM_174916	exon10	c.1138delA	p.M380fs	.	.	155.0	10.0	113.0	0.0	.	.	Atlas-Indel
C2CD3	26005	hgsc.bcm.edu	37	11	73803501	73803501	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	C2CD3	NM_015531	exon19	c.3478delA	p.R1160fs	.	.	176.0	11.0	136.0	0.0	.	.	Atlas-Indel
DPP3	10072	hgsc.bcm.edu	37	11	66252728	66252728	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	DPP3	NM_130443	exon3	c.354delG	p.L118fs	.	.	109.0	10.0	105.0	0.0	.	.	Atlas-Indel
LDLRAD4	753	hgsc.bcm.edu	37	18	13612766	13612766	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	.	NM_001003674	exon1	c.62delT	p.L21X	.	.	154.0	10.0	139.0	0.0	.	.	Atlas-Indel
PARP14	54625	hgsc.bcm.edu	37	3	122437236	122437236	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	PARP14	NM_017554	exon14	c.4237delC	p.Q1413fs	.	.	158.0	13.0	88.0	0.0	.	.	Atlas-Indel
EPN1	29924	hgsc.bcm.edu	37	19	56206189	56206189	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	.	NM_001130071	exon10	c.1619delG	p.S540fs	.	.	188.0	13.0	155.0	0.0	.	.	Atlas-Indel
DDIT4L	115265	hgsc.bcm.edu	37	4	101108955	101108955	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	DDIT4L	NM_145244	exon3	c.462delC	p.F154fs	.	.	181.0	13.0	178.0	0.0	.	.	Atlas-Indel
APOD	347	hgsc.bcm.edu	37	3	195295847	195295847	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	APOD	NM_001647	exon5	c.495delT	p.N165fs	.	.	180.0	11.0	198.0	0.0	.	.	Atlas-Indel
RB1CC1	9821	hgsc.bcm.edu	37	8	53569803	53569803	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	RB1CC1	NM_001083617	exon15	c.2587delC	p.H863fs	.	.	183.0	11.0	64.0	0.0	.	.	Atlas-Indel
ARID4A	5926	hgsc.bcm.edu	37	14	58796774	58796774	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	ARID4A	NM_002892	exon11	c.792delG	p.W264X	.	.	148.0	10.0	166.0	0.0	.	.	Atlas-Indel
LILRB2	10288	hgsc.bcm.edu	37	19	54781769	54781769	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	LILRB2	NM_005874	exon8	c.1284delA	p.P428fs	.	.	242.0	16.0	147.0	0.0	.	.	Atlas-Indel
C1D	10438	hgsc.bcm.edu	37	2	68270088	68270088	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	C1D	NM_001190265	exon6	c.360delT	p.N120fs	.	.	164.0	10.0	118.0	0.0	.	.	Atlas-Indel
HDX	139324	hgsc.bcm.edu	37	X	83730320	83730320	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	HDX	NM_144657	exon2	c.87delT	p.N29fs	.	.	148.0	10.0	146.0	0.0	.	.	Atlas-Indel
ZNF532	55205	hgsc.bcm.edu	37	18	56585671	56585671	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	ZNF532	NM_018181	exon4	c.151delT	p.S51fs	.	.	107.0	10.0	83.0	0.0	.	.	Atlas-Indel
HLA-DRB5	3127	hgsc.bcm.edu	37	6	32487268	32487268	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	HLA-DRB5	NM_002125	exon3	c.532delC	p.Q178fs	.	.	147.0	10.0	119.0	0.0	.	.	Atlas-Indel
SLC4A11	83959	hgsc.bcm.edu	37	20	3218620	3218620	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	SLC4A11	NM_001174090	exon1	c.92delA	p.E31fs	.	.	147.0	10.0	111.0	0.0	.	.	Atlas-Indel
NOL10	79954	hgsc.bcm.edu	37	2	10742949	10742949	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	.	NM_024894	exon16	c.1286delT	p.I429fs	.	.	156.0	10.0	94.0	0.0	.	.	Atlas-Indel
DNM3	26052	hgsc.bcm.edu	37	1	172356459	172356459	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	DNM3	NM_015569	exon19	c.2244delA	p.A748fs	.	.	158.0	11.0	81.0	0.0	.	.	Atlas-Indel
SLC25A14	9016	hgsc.bcm.edu	37	X	129483268	129483268	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	SLC25A14	NM_003951	exon4	c.360delT	p.I120fs	.	.	135.0	10.0	113.0	0.0	.	.	Atlas-Indel
SETD2	29072	hgsc.bcm.edu	37	3	47143010	47143010	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	SETD2	NM_014159	exon8	c.4954delA	p.T1652fs	.	.	160.0	12.0	128.0	0.0	.	.	Atlas-Indel
CAPN2	824	hgsc.bcm.edu	37	1	223934727	223934727	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	CAPN2	NM_001748	exon5	c.588delA	p.S196fs	.	.	193.0	14.0	133.0	0.0	.	.	Atlas-Indel
BAIAP2L1	55971	hgsc.bcm.edu	37	7	97939854	97939854	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	BAIAP2L1	NM_018842	exon9	c.859delG	p.A287fs	.	.	169.0	13.0	111.0	0.0	.	.	Atlas-Indel
KIAA1199	57214	hgsc.bcm.edu	37	15	81221438	81221438	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	KIAA1199	NM_018689	exon20	c.2534delT	p.V845fs	.	.	313.0	19.0	229.0	0.0	.	.	Atlas-Indel
PPP4R1L	55370	hgsc.bcm.edu	37	20	56846507	56846507	+	RNA	DEL	A	A	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	PPP4R1L	.	.	.	.	.	.	143.0	12.0	111.0	0.0	.	.	Atlas-Indel
ERO1L	30001	hgsc.bcm.edu	37	14	53119839	53119839	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	ERO1L	NM_014584	exon12	c.1004delT	p.I335fs	.	.	142.0	10.0	140.0	0.0	.	.	Atlas-Indel
TAF1A	9015	hgsc.bcm.edu	37	1	222753126	222753126	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	TAF1A	NM_005681	exon4	c.381delT	p.N127fs	.	.	202.0	13.0	139.0	0.0	.	.	Atlas-Indel
CHGB	1114	hgsc.bcm.edu	37	20	5904345	5904345	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	CHGB	NM_001819	exon4	c.1554delA	p.L518fs	.	.	163.0	10.0	95.0	0.0	.	.	Atlas-Indel
MSH6	2956	hgsc.bcm.edu	37	2	48025968	48025968	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	MSH6	NM_000179	exon4	c.845delT	p.V282fs	.	.	130.0	10.0	80.0	0.0	.	.	Atlas-Indel
TOX2	84969	hgsc.bcm.edu	37	20	42694616	42694616	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	TOX2	NM_001098797	exon7	c.1224delG	p.L408fs	.	.	206.0	16.0	115.0	0.0	.	.	Atlas-Indel
KIF1B	23095	hgsc.bcm.edu	37	1	10327488	10327488	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	KIF1B	NM_183416	exon6	c.479delC	p.P160fs	.	.	160.0	10.0	144.0	0.0	.	.	Atlas-Indel
PWWP2A	114825	hgsc.bcm.edu	37	5	159520656	159520656	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	PWWP2A	NM_052927	exon2	c.1002delG	p.K334fs	.	.	192.0	12.0	121.0	0.0	.	.	Atlas-Indel
LIPG	9388	hgsc.bcm.edu	37	18	47095818	47095818	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	LIPG	NM_006033	exon4	c.470delA	p.D157fs	.	.	163.0	10.0	154.0	0.0	.	.	Atlas-Indel
NAV1	89796	hgsc.bcm.edu	37	1	201750396	201750396	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	NAV1	NM_020443	exon5	c.1621delT	p.S541fs	.	.	159.0	11.0	99.0	0.0	.	.	Atlas-Indel
NKTR	4820	hgsc.bcm.edu	37	3	42679036	42679036	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	NKTR	NM_005385	exon13	c.1839delT	p.S613fs	.	.	161.0	12.0	99.0	0.0	.	.	Atlas-Indel
RGPD5	84220	hgsc.bcm.edu	37	2	110588995	110588995	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	RGPD5	NM_005054	exon18	c.2567delA	p.Q856fs	.	.	145.0	10.0	85.0	0.0	.	.	Atlas-Indel
NOXRED1	122945	hgsc.bcm.edu	37	14	77872475	77872475	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	.	NM_001113475	exon5	c.687delA	p.G229fs	.	.	150.0	10.0	169.0	0.0	.	.	Atlas-Indel
SLC1A1	6505	hgsc.bcm.edu	37	9	4561480	4561480	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	SLC1A1	NM_004170	exon3	c.263delG	p.G88fs	.	.	140.0	11.0	115.0	0.0	.	.	Atlas-Indel
ACYP1	97	hgsc.bcm.edu	37	14	75520310	75520310	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	ACYP1	NM_001107	exon3	c.138delC	p.G46fs	.	.	147.0	10.0	140.0	0.0	.	.	Atlas-Indel
PSMA5	5686	hgsc.bcm.edu	37	1	109954503	109954503	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	PSMA5	NM_002790	exon6	c.455delA	p.Q152fs	.	.	265.0	16.0	184.0	0.0	.	.	Atlas-Indel
SAMM50	25813	hgsc.bcm.edu	37	22	44379823	44379823	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	SAMM50	NM_015380	exon12	c.1017delT	p.L339fs	.	.	189.0	13.0	152.0	0.0	.	.	Atlas-Indel
CDR1	1038	hgsc.bcm.edu	37	X	139866088	139866088	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	CDR1	NM_004065	exon1	c.445delG	p.G149fs	.	.	213.0	14.0	131.0	0.0	.	.	Atlas-Indel
POLQ	10721	hgsc.bcm.edu	37	3	121192306	121192306	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	POLQ	NM_199420	exon21	c.6435delA	p.P2145fs	.	.	111.0	11.0	102.0	0.0	.	.	Atlas-Indel
TCN1	6947	hgsc.bcm.edu	37	11	59626598	59626598	+	Frame_Shift_Del	DEL	T	T	-	rs4987226		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	TCN1	NM_001062	exon5	c.700delG	p.E234fs	.	.	124.0	10.0	98.0	0.0	+|0.995;-|0.005	.	Atlas-Indel
MYH8	4626	hgsc.bcm.edu	37	17	10307697	10307697	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	MYH8,NS,carcinoma,+1	MYH8	NM_002472	exon22	c.2639delT	p.M880fs	.	.	276.0	17.0	279.0	0.0	.	.	Atlas-Indel
SAMM50	25813	hgsc.bcm.edu	37	22	44368791	44368791	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	SAMM50	NM_015380	exon6	c.469delG	p.E157fs	.	.	138.0	10.0	122.0	0.0	.	.	Atlas-Indel
MUC16	94025	hgsc.bcm.edu	37	19	9085053	9085053	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	MUC16	NM_024690	exon1	c.6763delT	p.S2255fs	.	.	110.0	10.0	89.0	0.0	.	.	Atlas-Indel
CLTC	1213	hgsc.bcm.edu	37	17	57756782	57756782	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	CLTC	NM_004859	exon18	c.2820delC	p.F940fs	.	.	189.0	13.0	169.0	0.0	.	.	Atlas-Indel
KRTAP10-4	386672	hgsc.bcm.edu	37	21	45993943	45993943	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	KRTAP10-4	NM_198687	exon1	c.307delT	p.S103fs	.	.	263.0	17.0	232.0	0.0	.	.	Atlas-Indel
NBEA	26960	hgsc.bcm.edu	37	13	36125104	36125104	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	NBEA	NM_015678	exon43	c.6740delT	p.V2247fs	.	.	133.0	10.0	118.0	0.0	.	.	Atlas-Indel
FFAR4	338557	hgsc.bcm.edu	37	10	95347278	95347278	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	.	NM_181745	exon4	c.1045delA	p.I349fs	.	.	195.0	12.0	170.0	0.0	.	.	Atlas-Indel
FAT1	2195	hgsc.bcm.edu	37	4	187539266	187539266	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	FAT1	NM_005245	exon10	c.8475delA	p.G2825fs	.	.	129.0	11.0	153.0	0.0	.	.	Atlas-Indel
FBXO46	23403	hgsc.bcm.edu	37	19	46216117	46216117	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	FBXO46	NM_001080469	exon2	c.638delT	p.V213fs	.	.	130.0	10.0	130.0	0.0	.	.	Atlas-Indel
MX2	4600	hgsc.bcm.edu	37	21	42767625	42767625	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	MX2	NM_002463	exon7	c.982delC	p.R328fs	.	.	151.0	10.0	138.0	0.0	.	.	Atlas-Indel
CHRNA4	1137	hgsc.bcm.edu	37	20	61981195	61981195	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	CHRNA4	NM_000744	exon5	c.1569delA	p.P523fs	.	.	147.0	10.0	68.0	0.0	.	.	Atlas-Indel
C7orf31	136895	hgsc.bcm.edu	37	7	25200833	25200833	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	C7orf31	NM_138811	exon4	c.359delG	p.S120fs	.	.	226.0	16.0	145.0	0.0	.	.	Atlas-Indel
ADIPOR1	51094	hgsc.bcm.edu	37	1	202917518	202917518	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	ADIPOR1	NM_015999	exon3	c.173delA	p.Q58fs	.	.	130.0	10.0	80.0	0.0	.	.	Atlas-Indel
YAP1	10413	hgsc.bcm.edu	37	11	101984981	101984981	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	YAP1	NM_001130145	exon2	c.427delA	p.T143fs	.	.	164.0	10.0	162.0	0.0	.	.	Atlas-Indel
FLNA	2316	hgsc.bcm.edu	37	X	153596402	153596402	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	FLNA	NM_001456	exon3	c.431delT	p.L144fs	.	.	182.0	11.0	122.0	0.0	.	.	Atlas-Indel
SIRPB1	10326	hgsc.bcm.edu	37	20	1551499	1551499	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	SIRPB1	NM_006065	exon4	c.1037delT	p.L346fs	.	.	161.0	10.0	115.0	0.0	.	.	Atlas-Indel
RAB10	10890	hgsc.bcm.edu	37	2	26257589	26257589	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	RAB10	NM_016131	exon1	c.111delC	p.T37fs	.	.	204.0	13.0	173.0	0.0	.	.	Atlas-Indel
RIMBP3C	150221	hgsc.bcm.edu	37	22	21901827	21901827	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	.	NM_001128633	exon1	c.3440delT	p.V1147fs	.	.	13.0	12.0	0.0	0.0	.	.	Atlas-Indel
CIB3	117286	hgsc.bcm.edu	37	19	16275654	16275654	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	CIB3	NM_054113	exon5	c.418delC	p.L140X	.	.	167.0	15.0	157.0	0.0	.	.	Atlas-Indel
AADACL4	343066	hgsc.bcm.edu	37	1	12704616	12704616	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	AADACL4	NM_001013630	exon1	c.50delT	p.L17fs	.	.	189.0	12.0	153.0	0.0	.	.	Atlas-Indel
ABCA13	154664	hgsc.bcm.edu	37	7	48391899	48391899	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	ABCA13	NM_152701	exon31	c.10502delT	p.V3501fs	.	.	162.0	10.0	120.0	0.0	.	.	Atlas-Indel
ZNF451	26036	hgsc.bcm.edu	37	6	57012815	57012815	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	ZNF451	NM_001031623	exon10	c.1931delC	p.P644fs	.	.	157.0	10.0	78.0	0.0	.	.	Atlas-Indel
PNKP	11284	hgsc.bcm.edu	37	19	50368611	50368611	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	PNKP	NM_007254	exon4	c.272delA	p.D91fs	.	.	157.0	10.0	114.0	0.0	.	.	Atlas-Indel
MYO18A	399687	hgsc.bcm.edu	37	17	27438464	27438464	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	MYO18A	NM_078471	exon17	c.2879delG	p.R960fs	.	.	148.0	10.0	135.0	0.0	.	.	Atlas-Indel
AP1B1	162	hgsc.bcm.edu	37	22	29736724	29736724	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	AP1B1	NM_001127	exon14	c.1920delA	p.P640fs	.	.	137.0	11.0	114.0	0.0	.	.	Atlas-Indel
NAALAD2	10003	hgsc.bcm.edu	37	11	89914834	89914834	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	NAALAD2	NM_005467	exon17	c.1904delA	p.D635fs	.	.	163.0	11.0	148.0	0.0	.	.	Atlas-Indel
SPG20	23111	hgsc.bcm.edu	37	13	36878657	36878657	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	SPG20	NM_015087	exon9	c.1847delC	p.T616fs	.	.	162.0	10.0	143.0	0.0	.	.	Atlas-Indel
RP1	6101	hgsc.bcm.edu	37	8	55539238	55539238	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	RP1	NM_006269	exon4	c.2795delT	p.I932fs	.	.	170.0	11.0	68.0	0.0	.	.	Atlas-Indel
TCERG1	10915	hgsc.bcm.edu	37	5	145859646	145859646	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	TCERG1	NM_006706	exon12	c.1874delC	p.A625fs	.	.	166.0	10.0	119.0	0.0	.	.	Atlas-Indel
TTC3	7267	hgsc.bcm.edu	37	21	38558017	38558017	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	TTC3	NM_001001894	exon37	c.4767delG	p.Q1589fs	.	.	183.0	12.0	154.0	0.0	.	.	Atlas-Indel
ZNF93	81931	hgsc.bcm.edu	37	19	20027415	20027415	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	ZNF93	NM_031218	exon3	c.176delG	p.G59fs	.	.	155.0	10.0	115.0	0.0	.	.	Atlas-Indel
OLAH	55301	hgsc.bcm.edu	37	10	15103848	15103848	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	OLAH	NM_018324	exon5	c.447delA	p.A149fs	.	.	213.0	14.0	194.0	0.0	.	.	Atlas-Indel
CREBBP	1387	hgsc.bcm.edu	37	16	3777763	3777763	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	CREBBP	NM_004380	exon31	c.7286delA	p.D2429fs	.	.	121.0	11.0	83.0	0.0	.	.	Atlas-Indel
SIPA1L3	23094	hgsc.bcm.edu	37	19	38655235	38655235	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	SIPA1L3	NM_015073	exon15	c.3896delA	p.D1299fs	.	.	191.0	12.0	176.0	0.0	.	.	Atlas-Indel
HERC2	8924	hgsc.bcm.edu	37	15	28436339	28436339	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	HERC2	NM_004667	exon54	c.8504delT	p.M2835fs	.	.	116.0	11.0	86.0	0.0	.	.	Atlas-Indel
HSP90B1	7184	hgsc.bcm.edu	37	12	104331534	104331534	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	HSP90B1	NM_003299	exon6	c.804delC	p.V268fs	.	.	179.0	11.0	162.0	0.0	.	.	Atlas-Indel
WHSC1L1	54904	hgsc.bcm.edu	37	8	38146052	38146052	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	WHSC1L1	NM_023034	exon19	c.3455delC	p.T1152fs	.	.	130.0	10.0	133.0	0.0	.	.	Atlas-Indel
CEACAM3	1084	hgsc.bcm.edu	37	19	42314895	42314895	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	CEACAM3	NM_001815	exon6	c.652delG	p.A218fs	.	.	166.0	13.0	131.0	0.0	.	.	Atlas-Indel
STAT5B	6777	hgsc.bcm.edu	37	17	40362447	40362447	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	STAT5B	NM_012448	exon14	c.1750delC	p.H584fs	.	.	139.0	10.0	93.0	0.0	.	.	Atlas-Indel
ATP11C	286410	hgsc.bcm.edu	37	X	138869386	138869386	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	ATP11C	NM_001010986	exon15	c.1548delA	p.L516fs	.	.	147.0	10.0	149.0	0.0	.	.	Atlas-Indel
C9orf53	51198	hgsc.bcm.edu	37	9	21967542	21967542	+	RNA	DEL	C	C	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	.	.	.	.	.	.	.	176.0	11.0	123.0	0.0	.	.	Atlas-Indel
TNRC6A	27327	hgsc.bcm.edu	37	16	24807240	24807240	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	TNRC6A	NM_014494	exon9	c.3540delC	p.G1180fs	.	.	194.0	16.0	146.0	0.0	.	.	Atlas-Indel
MYO18B	84700	hgsc.bcm.edu	37	22	26164213	26164213	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	MYO18B	NM_032608	exon4	c.329delA	p.E110fs	.	.	158.0	10.0	120.0	0.0	.	.	Atlas-Indel
LAMP1	3916	hgsc.bcm.edu	37	13	113960838	113960838	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	LAMP1	NM_005561	exon2	c.99delG	p.V33fs	.	.	162.0	10.0	152.0	0.0	.	.	Atlas-Indel
DCHS1	8642	hgsc.bcm.edu	37	11	6647877	6647877	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	DCHS1	NM_003737	exon15	c.6271delA	p.R2091fs	.	.	160.0	10.0	116.0	0.0	.	.	Atlas-Indel
COL7A1	1294	hgsc.bcm.edu	37	3	48631052	48631052	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	COL7A1	NM_000094	exon3	c.345delC	p.G115fs	.	.	167.0	12.0	149.0	0.0	.	.	Atlas-Indel
GLG1	2734	hgsc.bcm.edu	37	16	74525009	74525009	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	GLG1	NM_001145667	exon8	c.1340delA	p.E447fs	.	.	182.0	12.0	185.0	0.0	.	.	Atlas-Indel
DMRTB1	63948	hgsc.bcm.edu	37	1	53925136	53925136	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	DMRTB1	NM_033067	exon1	c.9delC	p.D3fs	.	.	174.0	11.0	185.0	0.0	.	.	Atlas-Indel
LEPR	3953	hgsc.bcm.edu	37	1	66038049	66038049	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	LEPR	NM_002303	exon5	c.410delT	p.L137X	.	.	130.0	12.0	85.0	0.0	.	.	Atlas-Indel
BRE	9577	hgsc.bcm.edu	37	2	28521301	28521301	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	BRE	NM_199191	exon11	c.1030delC	p.Q344fs	.	.	241.0	15.0	152.0	0.0	.	.	Atlas-Indel
COL9A2	1298	hgsc.bcm.edu	37	1	40773421	40773421	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	COL9A2	NM_001852	exon18	c.909delA	p.P303fs	.	.	176.0	11.0	180.0	0.0	.	.	Atlas-Indel
TNR	7143	hgsc.bcm.edu	37	1	175372615	175372615	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	TNR	NM_003285	exon4	c.638delT	p.V213fs	.	.	165.0	10.0	88.0	0.0	.	.	Atlas-Indel
CREB1	1385	hgsc.bcm.edu	37	2	208442310	208442310	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	CREB1	NM_134442	exon8	c.811delT	p.S271fs	.	.	181.0	12.0	139.0	0.0	.	.	Atlas-Indel
CCDC168	643677	hgsc.bcm.edu	37	13	103383806	103383806	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	.	NM_001146197	exon4	c.19242delT	p.N6414fs	.	.	205.0	13.0	132.0	0.0	.	.	Atlas-Indel
BRCA2	675	hgsc.bcm.edu	37	13	32907421	32907421	+	Frame_Shift_Del	DEL	A	A	-	rs80359307		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	BRCA2	NM_000059	exon10	c.1805delG	p.G602fs	.	.	159.0	14.0	160.0	0.0	.	.	Atlas-Indel
LIMCH1	22998	hgsc.bcm.edu	37	4	41668635	41668635	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	LIMCH1	NM_014988	exon16	c.2193delC	p.D731fs	.	.	148.0	11.0	104.0	0.0	.	.	Atlas-Indel
PTPN20B	26095	hgsc.bcm.edu	37	10	46584455	46584455	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	.	NM_015605	exon7	c.561delC	p.N187fs	.	.	171.0	18.0	132.0	0.0	.	.	Atlas-Indel
PLEKHA3	65977	hgsc.bcm.edu	37	2	179355529	179355529	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	PLEKHA3	NM_019091	exon3	c.300delT	p.T100fs	.	.	192.0	14.0	131.0	0.0	.	.	Atlas-Indel
ACACA	31	hgsc.bcm.edu	37	17	35487101	35487101	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	ACACA	NM_198834	exon46	c.5724delC	p.G1908fs	.	.	192.0	13.0	200.0	0.0	.	.	Atlas-Indel
TDRD1	56165	hgsc.bcm.edu	37	10	115987018	115987018	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	TDRD1	NM_198795	exon23	c.3362delC	p.A1121fs	.	.	209.0	13.0	194.0	0.0	.	.	Atlas-Indel
PXN	5829	hgsc.bcm.edu	37	12	120652962	120652962	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	PXN	NM_001243756	exon7	c.1091delT	p.V364fs	.	.	210.0	13.0	249.0	0.0	.	.	Atlas-Indel
CCDC110	256309	hgsc.bcm.edu	37	4	186379943	186379943	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	CCDC110	NM_152775	exon6	c.1799delG	p.S600fs	.	.	100.0	10.0	117.0	0.0	.	.	Atlas-Indel
HHLA1	10086	hgsc.bcm.edu	37	8	133116366	133116366	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	.	NM_001145095	exon2	c.129delA	p.L43fs	.	.	187.0	14.0	79.0	0.0	.	.	Atlas-Indel
PRAP1	118471	hgsc.bcm.edu	37	10	135165935	135165935	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	PRAP1	NM_145202	exon5	c.446delA	p.H149fs	.	.	163.0	10.0	114.0	0.0	.	.	Atlas-Indel
STRN	6801	hgsc.bcm.edu	37	2	37129784	37129784	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	STRN	NM_003162	exon5	c.603delT	p.N201fs	.	.	202.0	15.0	145.0	0.0	.	.	Atlas-Indel
ETV1	2115	hgsc.bcm.edu	37	7	14027750	14027750	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	ETV1	NM_001163149	exon3	c.95delG	p.R32fs	.	.	185.0	12.0	189.0	0.0	.	.	Atlas-Indel
IFT88	8100	hgsc.bcm.edu	37	13	21148532	21148532	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	IFT88	NM_175605	exon4	c.34delC	p.Q12fs	.	.	322.0	21.0	211.0	0.0	.	.	Atlas-Indel
C12orf65	91574	hgsc.bcm.edu	37	12	123741526	123741526	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	C12orf65	NM_001194995	exon3	c.448delG	p.E150fs	.	.	134.0	10.0	112.0	0.0	.	.	Atlas-Indel
CMYA5	202333	hgsc.bcm.edu	37	5	79031144	79031144	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	CMYA5	NM_153610	exon2	c.6555delG	p.L2185fs	.	.	150.0	13.0	98.0	0.0	.	.	Atlas-Indel
DDX49	54555	hgsc.bcm.edu	37	19	19030629	19030629	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	DDX49	NM_019070	exon1	c.78delG	p.T26fs	.	.	164.0	10.0	143.0	0.0	.	.	Atlas-Indel
ATP2C2	9914	hgsc.bcm.edu	37	16	84486788	84486788	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	ATP2C2	NM_014861	exon19	c.1875delC	p.S625fs	.	.	150.0	10.0	103.0	0.0	.	.	Atlas-Indel
USP34	9736	hgsc.bcm.edu	37	2	61571112	61571112	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	USP34	NM_014709	exon16	c.2339delA	p.Q780fs	.	.	149.0	10.0	152.0	0.0	.	.	Atlas-Indel
CYP4B1	1580	hgsc.bcm.edu	37	1	47284387	47284387	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	CYP4B1	NM_001099772	exon12	c.1439delA	p.D480fs	.	.	156.0	10.0	163.0	0.0	.	.	Atlas-Indel
NLRP6	171389	hgsc.bcm.edu	37	11	281492	281492	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	NLRP6	NM_138329	exon4	c.1757delG	p.C586fs	.	.	153.0	10.0	124.0	0.0	.	.	Atlas-Indel
TCP1	6950	hgsc.bcm.edu	37	6	160202000	160202000	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	TCP1	NM_030752	exon8	c.941delG	p.R314fs	.	.	179.0	12.0	213.0	0.0	.	.	Atlas-Indel
COL9A1	1297	hgsc.bcm.edu	37	6	71010083	71010083	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	COL9A1	NM_001851	exon3	c.96delT	p.P32fs	.	.	165.0	12.0	134.0	0.0	.	.	Atlas-Indel
DHX40	79665	hgsc.bcm.edu	37	17	57656854	57656854	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	DHX40	NM_024612	exon9	c.1094delT	p.F365fs	.	.	10.0	10.0	3.0	0.0	.	.	Atlas-Indel
NCOA1	8648	hgsc.bcm.edu	37	2	24920612	24920612	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	NCOA1	NM_147223	exon9	c.893delC	p.A298fs	.	.	182.0	11.0	101.0	0.0	.	.	Atlas-Indel
C7orf10	79783	hgsc.bcm.edu	37	7	40899967	40899967	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	C7orf10	NM_001193311	exon15	c.1304delC	p.P435fs	.	.	200.0	14.0	206.0	0.0	.	.	Atlas-Indel
U2AF1L4	199746	hgsc.bcm.edu	37	19	36236292	36236292	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	U2AF1L4	NM_144987	exon1	c.2delT	p.M1fs	.	.	146.0	12.0	124.0	0.0	.	.	Atlas-Indel
SSC5D	284297	hgsc.bcm.edu	37	19	56002276	56002276	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	.	NM_001195267	exon6	c.723delT	p.C241fs	.	.	161.0	10.0	31.0	0.0	.	.	Atlas-Indel
STRC	161497	hgsc.bcm.edu	37	15	43909880	43909880	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	STRC	NM_153700	exon2	c.740delT	p.L247fs	.	.	111.0	10.0	75.0	0.0	.	.	Atlas-Indel
KRTAP5-10	387273	hgsc.bcm.edu	37	11	71276925	71276925	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	KRTAP5-10	NM_001012710	exon1	c.291delT	p.C97fs	.	.	166.0	11.0	78.0	0.0	.	.	Atlas-Indel
ABL1	25	hgsc.bcm.edu	37	9	133759994	133759995	+	Frame_Shift_Del	DEL	GA	GA	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	GA	GA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	ABL1	NM_007313	exon11	c.2373_2374del	p.791_792del	.	.	32.0	13.0	36.0	0.0	.	.	Atlas-Indel,Pindel
LYST	1130	hgsc.bcm.edu	37	1	235880039	235880039	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	LYST	NM_000081	exon41	c.9601delG	p.E3201fs	.	.	220.0	15.0	103.0	0.0	.	.	Atlas-Indel
CCDC171	203238	hgsc.bcm.edu	37	9	15623298	15623298	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	.	NM_173550	exon7	c.708delG	p.K236fs	.	.	180.0	11.0	147.0	0.0	.	.	Atlas-Indel
CCDC11	220136	hgsc.bcm.edu	37	18	47787507	47787507	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	CCDC11	NM_145020	exon3	c.401delC	p.T134fs	.	.	155.0	11.0	88.0	0.0	.	.	Atlas-Indel
FAM21B	55747	hgsc.bcm.edu	37	10	47915896	47915896	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	FAM21B	NM_018232	exon15	c.1302delC	p.S434fs	.	.	190.0	16.0	202.0	0.0	.	.	Atlas-Indel
TAF2	6873	hgsc.bcm.edu	37	8	120759116	120759116	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	TAF2	NM_003184	exon23	c.2938delG	p.G980fs	.	.	173.0	13.0	74.0	0.0	.	.	Atlas-Indel
SH3D21	79729	hgsc.bcm.edu	37	1	36785322	36785322	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	SH3D21	NM_001162530	exon14	c.1057delA	p.T353fs	.	.	247.0	16.0	228.0	0.0	.	.	Atlas-Indel
PHTF2	57157	hgsc.bcm.edu	37	7	77579071	77579071	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	PHTF2	NM_001127357	exon15	c.1933delC	p.L645fs	.	.	201.0	13.0	143.0	0.0	.	.	Atlas-Indel
DHX57	90957	hgsc.bcm.edu	37	2	39033812	39033812	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	DHX57	NM_198963	exon22	c.3706delC	p.Q1236fs	.	.	183.0	12.0	124.0	0.0	.	.	Atlas-Indel
DSC2	1824	hgsc.bcm.edu	37	18	28649035	28649035	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	DSC2	NM_024422	exon15	c.2334delC	p.N778fs	.	.	156.0	11.0	119.0	0.0	.	.	Atlas-Indel
MOV10	4343	hgsc.bcm.edu	37	1	113243060	113243060	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	MOV10	NM_020963	exon21	c.2942delT	p.L981fs	.	.	173.0	12.0	169.0	0.0	.	.	Atlas-Indel
CCDC168	643677	hgsc.bcm.edu	37	13	103394930	103394930	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	.	NM_001146197	exon4	c.8118delA	p.L2706fs	.	.	143.0	10.0	94.0	0.0	.	.	Atlas-Indel
TRIM33	51592	hgsc.bcm.edu	37	1	114942160	114942160	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	TRIM33	NM_033020	exon18	c.3040delC	p.H1014fs	.	.	188.0	13.0	207.0	0.0	.	.	Atlas-Indel
NOBOX	135935	hgsc.bcm.edu	37	7	144096920	144096920	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	NOBOX	NM_001080413	exon6	c.1085delT	p.M362fs	.	.	161.0	12.0	168.0	0.0	.	.	Atlas-Indel
TMEM244	253582	hgsc.bcm.edu	37	6	130166960	130166960	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	.	NM_001010876	exon2	c.72delC	p.F24fs	.	.	151.0	10.0	122.0	0.0	.	.	Atlas-Indel
POU5F1	5460	hgsc.bcm.edu	37	6	31138149	31138149	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	POU5F1	NM_002701	exon1	c.250delC	p.L84X	.	.	200.0	13.0	78.0	0.0	.	.	Atlas-Indel
TRPV3	162514	hgsc.bcm.edu	37	17	3424284	3424284	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	TRPV3	NM_001258205	exon14	c.1794delG	p.L598fs	.	.	178.0	12.0	160.0	0.0	.	.	Atlas-Indel
DCLRE1C	64421	hgsc.bcm.edu	37	10	14950883	14950883	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	DCLRE1C	NM_001033855	exon14	c.1604delA	p.Q535fs	.	.	132.0	12.0	101.0	0.0	.	.	Atlas-Indel
NLGN2	57555	hgsc.bcm.edu	37	17	7319293	7319293	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	NLGN2	NM_020795	exon6	c.1500delC	p.H500fs	.	.	154.0	10.0	172.0	0.0	.	.	Atlas-Indel
C3orf35	339883	hgsc.bcm.edu	37	3	37476531	37476531	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	C3orf35	NM_178339	exon6	c.422delC	p.T141fs	.	.	138.0	10.0	95.0	0.0	.	.	Atlas-Indel
C4orf47	441054	hgsc.bcm.edu	37	4	186353241	186353241	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	.	NM_001114357	exon2	c.205delA	p.I69fs	.	.	162.0	11.0	175.0	0.0	.	.	Atlas-Indel
DNAH14	127602	hgsc.bcm.edu	37	1	225328686	225328686	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	DNAH14	NM_001373	exon27	c.4419delT	p.L1473fs	.	.	154.0	10.0	89.0	0.0	.	.	Atlas-Indel
MRS2	57380	hgsc.bcm.edu	37	6	24423175	24423175	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	MRS2	NM_020662	exon10	c.1117delA	p.I373fs	.	.	246.0	17.0	127.0	0.0	.	.	Atlas-Indel
HERC2	8924	hgsc.bcm.edu	37	15	28366565	28366565	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	HERC2	NM_004667	exon86	c.13200delC	p.F4400fs	.	.	162.0	10.0	132.0	0.0	.	.	Atlas-Indel
C12orf50	160419	hgsc.bcm.edu	37	12	88390376	88390376	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	C12orf50	NM_152589	exon5	c.338delG	p.R113fs	.	.	153.0	11.0	150.0	0.0	.	.	Atlas-Indel
GPR158	57512	hgsc.bcm.edu	37	10	25887118	25887118	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	GPR158	NM_020752	exon11	c.2562delT	p.G854fs	.	.	148.0	11.0	93.0	0.0	.	.	Atlas-Indel
NOBOX	135935	hgsc.bcm.edu	37	7	144096122	144096122	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	NOBOX	NM_001080413	exon8	c.1391delA	p.Q464fs	.	.	193.0	13.0	223.0	0.0	.	.	Atlas-Indel
ZFPM2	23414	hgsc.bcm.edu	37	8	106573666	106573666	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	ZFPM2	NM_012082	exon4	c.376delT	p.W126fs	.	.	155.0	11.0	49.0	0.0	.	.	Atlas-Indel
FSIP1	161835	hgsc.bcm.edu	37	15	39910069	39910069	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	FSIP1	NM_152597	exon11	c.1567delA	p.M523fs	.	.	198.0	13.0	122.0	0.0	.	.	Atlas-Indel
ANKRD20A4	728747	hgsc.bcm.edu	37	9	69386012	69386012	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	.	NM_001098805	exon3	c.448delG	p.E150fs	.	.	92.0	11.0	101.0	0.0	.	.	Atlas-Indel
CNGB1	1258	hgsc.bcm.edu	37	16	57953155	57953155	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	CNGB1	NM_001297	exon20	c.1806delA	p.P602fs	.	.	228.0	14.0	200.0	0.0	.	.	Atlas-Indel
NPHP3	27031	hgsc.bcm.edu	37	3	132438560	132438560	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	NPHP3	NM_153240	exon2	c.509delG	p.R170fs	.	.	152.0	11.0	122.0	0.0	.	.	Atlas-Indel
HLTF	6596	hgsc.bcm.edu	37	3	148778638	148778638	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	HLTF	NM_139048	exon11	c.1169delC	p.T390fs	.	.	143.0	10.0	120.0	0.0	.	.	Atlas-Indel
SLC44A5	204962	hgsc.bcm.edu	37	1	75684228	75684228	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	SLC44A5	NM_152697	exon17	c.1477delC	p.P493fs	.	.	136.0	10.0	113.0	0.0	.	.	Atlas-Indel
MYOCD	93649	hgsc.bcm.edu	37	17	12666622	12666622	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	MYOCD	NM_001146312	exon14	c.2621delT	p.L874fs	.	.	179.0	11.0	170.0	0.0	.	.	Atlas-Indel
DNAH6	1768	hgsc.bcm.edu	37	2	84913642	84913642	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	DNAH6	NM_001370	exon44	c.7097delA	p.Y2366fs	.	.	254.0	16.0	251.0	0.0	.	.	Atlas-Indel
CLEC4F	165530	hgsc.bcm.edu	37	2	71043906	71043906	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	CLEC4F	NM_001258027	exon4	c.608delG	p.S203fs	.	.	172.0	11.0	149.0	0.0	.	.	Atlas-Indel
FOXD4L1	200350	hgsc.bcm.edu	37	2	114257385	114257385	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	FOXD4L1	NM_012184	exon1	c.551delA	p.D184fs	.	.	181.0	11.0	125.0	0.0	.	.	Atlas-Indel
ADRBK1	156	hgsc.bcm.edu	37	11	67048975	67048975	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	ADRBK1	NM_001619	exon9	c.692delA	p.Q231fs	.	.	154.0	10.0	91.0	0.0	.	.	Atlas-Indel
ATRX	546	hgsc.bcm.edu	37	X	76938413	76938413	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	ATRX	NM_000489	exon9	c.2336delG	p.R779fs	.	.	197.0	12.0	134.0	0.0	.	.	Atlas-Indel
LARP1	23367	hgsc.bcm.edu	37	5	154181822	154181822	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	LARP1	NM_015315	exon11	c.1740delA	p.P580fs	.	.	157.0	16.0	119.0	0.0	.	.	Atlas-Indel
NCAPG	64151	hgsc.bcm.edu	37	4	17816898	17816898	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	NCAPG	NM_022346	exon5	c.691delG	p.V231fs	.	.	111.0	10.0	103.0	0.0	.	.	Atlas-Indel
CAMK2A	815	hgsc.bcm.edu	37	5	149636381	149636381	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	CAMK2A	NM_171825	exon5	c.287delA	p.E96fs	.	.	177.0	12.0	155.0	0.0	.	.	Atlas-Indel
ZNF667	63934	hgsc.bcm.edu	37	19	56953129	56953129	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	ZNF667	NM_022103	exon5	c.1236delG	p.K412fs	.	.	145.0	10.0	129.0	0.0	.	.	Atlas-Indel
CBLB	868	hgsc.bcm.edu	37	3	105452913	105452913	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	CBLB	NM_170662	exon9	c.1144delG	p.D382fs	.	.	250.0	15.0	216.0	0.0	.	.	Atlas-Indel
VPS13C	54832	hgsc.bcm.edu	37	15	62243167	62243167	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	VPS13C	NM_020821	exon40	c.4514delT	p.L1505fs	.	.	250.0	16.0	146.0	0.0	.	.	Atlas-Indel
SPATA25	128497	hgsc.bcm.edu	37	20	44515612	44515612	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	.	NM_080608	exon2	c.229delA	p.T77fs	.	.	187.0	15.0	127.0	0.0	.	.	Atlas-Indel
MCM3AP	8888	hgsc.bcm.edu	37	21	47700452	47700452	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	MCM3AP	NM_003906	exon3	c.1482delG	p.L494fs	.	.	261.0	16.0	228.0	0.0	.	.	Atlas-Indel
IL17RE	132014	hgsc.bcm.edu	37	3	9952818	9952818	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	IL17RE	NM_153483	exon11	c.1105delG	p.V369fs	.	.	210.0	13.0	158.0	0.0	.	.	Atlas-Indel
PPAT	5471	hgsc.bcm.edu	37	4	57267544	57267544	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	PPAT	NM_002703	exon7	c.839delG	p.C280fs	.	.	179.0	11.0	190.0	0.0	.	.	Atlas-Indel
PCMT1	5110	hgsc.bcm.edu	37	6	150123486	150123486	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	PCMT1	NM_005389	exon7	c.828delT	p.D276fs	.	.	182.0	11.0	164.0	0.0	.	.	Atlas-Indel
SRCAP	10847	hgsc.bcm.edu	37	16	30745939	30745939	+	Splice_Site	DEL	A	A	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	SRCAP	NM_006662	exon31	c.6729+2A>-	.	.	.	185.0	13.0	165.0	0.0	.	.	Atlas-Indel
C4A	720	hgsc.bcm.edu	37	6	31964732	31964732	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	C4A	NM_007293	exon29	c.3802delG	p.A1268fs	.	.	151.0	10.0	88.0	0.0	.	.	Atlas-Indel
SCYL2	55681	hgsc.bcm.edu	37	12	100729661	100729661	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	SCYL2	NM_017988	exon16	c.2001delC	p.D667fs	.	.	148.0	10.0	98.0	0.0	.	.	Atlas-Indel
MLL3	58508	hgsc.bcm.edu	37	7	151874093	151874093	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	MLL3	NM_170606	exon38	c.8446delT	p.S2816fs	.	.	221.0	16.0	158.0	0.0	.	.	Atlas-Indel
PROB1	389333	hgsc.bcm.edu	37	5	138727890	138727890	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	.	NM_001161546	exon1	c.2882delT	p.L961fs	.	.	127.0	10.0	55.0	0.0	.	.	Atlas-Indel
MIS18BP1	55320	hgsc.bcm.edu	37	14	45696022	45696022	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	MIS18BP1	NM_018353	exon10	c.1765delG	p.E589fs	.	.	115.0	12.0	73.0	0.0	.	.	Atlas-Indel
MPG	4350	hgsc.bcm.edu	37	16	129299	129299	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	MPG	NM_002434	exon2	c.7delA	p.T3fs	.	.	177.0	11.0	159.0	0.0	.	.	Atlas-Indel
TPPP2	122664	hgsc.bcm.edu	37	14	21498757	21498757	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	TPPP2	NM_173846	exon2	c.16delG	p.E6fs	.	.	181.0	11.0	172.0	0.0	.	.	Atlas-Indel
RYR1	6261	hgsc.bcm.edu	37	19	39008261	39008261	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	RYR1	NM_001042723	exon66	c.9947delT	p.L3316fs	.	.	234.0	16.0	155.0	0.0	.	.	Atlas-Indel
FAT3	120114	hgsc.bcm.edu	37	11	92533028	92533028	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	FAT3	NM_001008781	exon9	c.6848delA	p.N2283fs	.	.	120.0	10.0	86.0	0.0	.	.	Atlas-Indel
PDE1C	5137	hgsc.bcm.edu	37	7	31793035	31793035	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	PDE1C	NM_001191058	exon19	c.2274delG	p.K758fs	.	.	189.0	13.0	181.0	0.0	.	.	Atlas-Indel
TUBB3	10381	hgsc.bcm.edu	37	16	90001894	90001894	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	TUBB3	NM_006086	exon4	c.1034delT	p.I345fs	.	.	168.0	12.0	125.0	0.0	.	.	Atlas-Indel
CAPRIN1	4076	hgsc.bcm.edu	37	11	34074178	34074178	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	CAPRIN1	NM_203364	exon2	c.210delG	p.K70fs	.	.	148.0	10.0	127.0	0.0	.	.	Atlas-Indel
TDRD6	221400	hgsc.bcm.edu	37	6	46660975	46660975	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	TDRD6	NM_001168359	exon1	c.5109delT	p.I1703fs	.	.	164.0	10.0	84.0	0.0	.	.	Atlas-Indel
FSTL4	23105	hgsc.bcm.edu	37	5	132553042	132553042	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	FSTL4	NM_015082	exon13	c.1488delT	p.N496fs	.	.	180.0	12.0	137.0	0.0	.	.	Atlas-Indel
EFTUD2	9343	hgsc.bcm.edu	37	17	42929803	42929803	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	EFTUD2	NM_004247	exon26	c.2690delC	p.S897fs	.	.	156.0	13.0	157.0	0.0	.	.	Atlas-Indel
DHX34	9704	hgsc.bcm.edu	37	19	47884149	47884149	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	DHX34	NM_014681	exon15	c.3058delA	p.T1020fs	.	.	158.0	11.0	103.0	0.0	.	.	Atlas-Indel
P4HTM	54681	hgsc.bcm.edu	37	3	49043193	49043193	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	P4HTM	NM_177938	exon7	c.1239delG	p.V413fs	.	.	132.0	10.0	109.0	0.0	.	.	Atlas-Indel
NEDD9	4739	hgsc.bcm.edu	37	6	11190264	11190264	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	NEDD9	NM_001142393	exon6	c.1839delT	p.P613fs	.	.	164.0	13.0	112.0	0.0	.	.	Atlas-Indel
VCX3B	425054	hgsc.bcm.edu	37	X	8433809	8433809	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	.	NM_001001888	exon3	c.125delG	p.G42fs	.	.	231.0	15.0	133.0	0.0	.	.	Atlas-Indel
XIRP2	129446	hgsc.bcm.edu	37	2	168105629	168105629	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	XIRP2	NM_152381	exon9	c.7726delC	p.Q2576fs	.	.	182.0	11.0	134.0	0.0	.	.	Atlas-Indel
AFG3L2	10939	hgsc.bcm.edu	37	18	12370885	12370885	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	AFG3L2	NM_006796	exon3	c.256delG	p.A86fs	.	.	248.0	18.0	185.0	0.0	.	.	Atlas-Indel
RBM46	166863	hgsc.bcm.edu	37	4	155720193	155720193	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	RBM46	NM_144979	exon4	c.878delG	p.G293fs	.	.	148.0	10.0	149.0	0.0	.	.	Atlas-Indel
TGM6	343641	hgsc.bcm.edu	37	20	2384126	2384126	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	TGM6	NM_198994	exon8	c.1072delA	p.T358fs	.	.	154.0	10.0	120.0	0.0	.	.	Atlas-Indel
NTNG2	84628	hgsc.bcm.edu	37	9	135042407	135042407	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	NTNG2	NM_032536	exon2	c.188delA	p.D63fs	.	.	200.0	12.0	164.0	0.0	.	.	Atlas-Indel
FAM120AOS	158293	hgsc.bcm.edu	37	9	96209929	96209929	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	FAM120AOS	NM_198841	exon3	c.736delC	p.P246fs	.	.	156.0	12.0	149.0	0.0	.	.	Atlas-Indel
SPATA31A5	727905	hgsc.bcm.edu	37	9	41506041	41506041	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	.	NM_001113541	exon4	c.3312delT	p.F1104fs	.	.	173.0	11.0	105.0	0.0	.	.	Atlas-Indel
CTIF	9811	hgsc.bcm.edu	37	18	46288021	46288021	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	CTIF	NM_001142397	exon10	c.1337delA	p.E446fs	.	.	141.0	11.0	109.0	0.0	.	.	Atlas-Indel
FAT1	2195	hgsc.bcm.edu	37	4	187628769	187628769	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	FAT1	NM_005245	exon2	c.2214delC	p.F738fs	.	.	124.0	10.0	123.0	0.0	.	.	Atlas-Indel
TNR	7143	hgsc.bcm.edu	37	1	175375844	175375844	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	TNR	NM_003285	exon3	c.8delC	p.A3fs	.	.	166.0	10.0	97.0	0.0	.	.	Atlas-Indel
DONSON	29980	hgsc.bcm.edu	37	21	34954281	34954281	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	DONSON	NM_017613	exon7	c.1128delG	p.K376fs	.	.	164.0	11.0	195.0	0.0	.	.	Atlas-Indel
COL19A1	1310	hgsc.bcm.edu	37	6	70610184	70610184	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	COL19A1	NM_001858	exon4	c.219delT	p.D73fs	.	.	164.0	11.0	163.0	0.0	.	.	Atlas-Indel
ELF1	1997	hgsc.bcm.edu	37	13	41523943	41523943	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	ELF1	NM_172373	exon5	c.529delG	p.G177fs	.	.	270.0	17.0	214.0	0.0	.	.	Atlas-Indel
AHNAK2	113146	hgsc.bcm.edu	37	14	105418454	105418454	+	Frame_Shift_Del	DEL	T	T	-	rs71975166		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	AHNAK2	NM_138420	exon7	c.3335delG	p.S1112fs	.	.	177.0	11.0	153.0	0.0	.	.	Atlas-Indel
USP38	84640	hgsc.bcm.edu	37	4	144118977	144118977	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	USP38	NM_032557	exon4	c.949delG	p.V317fs	.	.	166.0	10.0	164.0	0.0	.	.	Atlas-Indel
MTRR	4552	hgsc.bcm.edu	37	5	7897029	7897029	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	MTRR	NM_024010	exon13	c.1809delG	p.L603fs	.	.	293.0	18.0	267.0	0.0	.	.	Atlas-Indel
OR5T3	390154	hgsc.bcm.edu	37	11	56020026	56020026	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	OR5T3	NM_001004747	exon1	c.350delC	p.A117fs	.	.	157.0	10.0	100.0	0.0	.	.	Atlas-Indel
HTR1E	3354	hgsc.bcm.edu	37	6	87725971	87725971	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	HTR1E	NM_000865	exon2	c.918delA	p.P306fs	.	.	200.0	12.0	195.0	0.0	.	.	Atlas-Indel
ALG10B	144245	hgsc.bcm.edu	37	12	38714473	38714473	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	ALG10B	NM_001013620	exon3	c.879delC	p.Y293fs	.	.	331.0	29.0	224.0	0.0	.	.	Atlas-Indel
KL	9365	hgsc.bcm.edu	37	13	33628034	33628034	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	KL	NM_004795	exon2	c.949delC	p.Q317fs	.	.	144.0	10.0	122.0	0.0	.	.	Atlas-Indel
KDELC1	79070	hgsc.bcm.edu	37	13	103449216	103449216	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	KDELC1	NM_024089	exon2	c.327delT	p.N109fs	.	.	147.0	11.0	117.0	0.0	.	.	Atlas-Indel
TMEM8A	58986	hgsc.bcm.edu	37	16	427749	427749	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	TMEM8A	NM_021259	exon2	c.222delA	p.P74fs	.	.	162.0	10.0	120.0	0.0	.	.	Atlas-Indel
SPATA31A6	389730	hgsc.bcm.edu	37	9	43625186	43625186	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	.	NM_001145196	exon4	c.3502delC	p.Q1168fs	.	.	284.0	19.0	362.0	0.0	.	.	Atlas-Indel
BCL11A	53335	hgsc.bcm.edu	37	2	60688969	60688969	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	BCL11A	NM_022893	exon4	c.1079delT	p.L360fs	.	.	147.0	10.0	147.0	0.0	.	.	Atlas-Indel
IGF2BP3	10643	hgsc.bcm.edu	37	7	23387322	23387322	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	IGF2BP3	NM_006547	exon7	c.716delC	p.A239fs	.	.	206.0	14.0	166.0	0.0	.	.	Atlas-Indel
APBA2	321	hgsc.bcm.edu	37	15	29346583	29346583	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	APBA2	NM_005503	exon3	c.495delG	p.L165fs	.	.	159.0	10.0	159.0	0.0	.	.	Atlas-Indel
PAK2	5062	hgsc.bcm.edu	37	3	196541368	196541368	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	PAK2	NM_002577	exon11	c.981delT	p.A327fs	.	.	222.0	14.0	152.0	0.0	.	.	Atlas-Indel
ARF1	375	hgsc.bcm.edu	37	1	228284858	228284858	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	ARF1	NM_001024228	exon2	c.42delC	p.G14fs	.	.	162.0	10.0	105.0	0.0	.	.	Atlas-Indel
PRR3	80742	hgsc.bcm.edu	37	6	30525950	30525950	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	PRR3	NM_025263	exon2	c.129delT	p.P43fs	.	.	135.0	12.0	91.0	0.0	.	.	Atlas-Indel
SIPA1L1	26037	hgsc.bcm.edu	37	14	72196875	72196875	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	SIPA1L1	NM_015556	exon18	c.4780delA	p.R1594fs	.	.	185.0	13.0	167.0	0.0	.	.	Atlas-Indel
TTN	7273	hgsc.bcm.edu	37	2	179391906	179391906	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	TTN	NM_001267550	exon363	c.107810delT	p.I35937fs	.	.	281.0	17.0	221.0	0.0	.	.	Atlas-Indel
CLK2	1196	hgsc.bcm.edu	37	1	155240721	155240721	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	CLK2	NM_003993	exon2	c.49delA	p.S17fs	.	.	174.0	12.0	93.0	0.0	.	.	Atlas-Indel
ZNF217	7764	hgsc.bcm.edu	37	20	52193620	52193620	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	ZNF217	NM_006526	exon3	c.1684delG	p.D562fs	.	.	126.0	12.0	81.0	0.0	.	.	Atlas-Indel
F8A2	474383	hgsc.bcm.edu	37	X	154612857	154612857	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	.	NM_001007523	exon1	c.1093delT	p.S365fs	.	.	229.0	14.0	194.0	0.0	.	.	Atlas-Indel
GPR22	2845	hgsc.bcm.edu	37	7	107115730	107115730	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	GPR22	NM_005295	exon3	c.1224delT	p.P408fs	.	.	163.0	10.0	118.0	0.0	.	.	Atlas-Indel
CDC73	79577	hgsc.bcm.edu	37	1	193111006	193111006	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	CDC73	NM_024529	exon7	c.538delG	p.E180fs	.	.	153.0	10.0	103.0	0.0	.	.	Atlas-Indel
CLTCL1	8218	hgsc.bcm.edu	37	22	19209481	19209481	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	CLTCL1	NM_001835	exon16	c.2555delG	p.R852fs	.	.	165.0	12.0	112.0	0.0	.	.	Atlas-Indel
CNTFR	1271	hgsc.bcm.edu	37	9	34556395	34556395	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	CNTFR	NM_147164	exon7	c.627delT	p.N209fs	.	.	140.0	10.0	90.0	0.0	.	.	Atlas-Indel
FAM184B	27146	hgsc.bcm.edu	37	4	17660011	17660011	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	FAM184B	NM_015688	exon10	c.2000delT	p.L667fs	.	.	156.0	10.0	145.0	0.0	.	.	Atlas-Indel
NOL4	8715	hgsc.bcm.edu	37	18	31803122	31803122	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	NOL4	NM_003787	exon1	c.97delT	p.Y33fs	.	.	116.0	10.0	76.0	0.0	.	.	Atlas-Indel
OGFR	11054	hgsc.bcm.edu	37	20	61444462	61444462	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	OGFR	NM_007346	exon7	c.1494delC	p.N498fs	.	.	152.0	10.0	63.0	0.0	.	.	Atlas-Indel
SEMG1	6406	hgsc.bcm.edu	37	20	43836178	43836178	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	SEMG1	NM_003007	exon2	c.239delG	p.R80fs	.	.	280.0	17.0	156.0	0.0	.	.	Atlas-Indel
SPAG1	6674	hgsc.bcm.edu	37	8	101199429	101199429	+	Frame_Shift_Del	DEL	T	T	-	rs34763241		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	SPAG1	NM_003114	exon8	c.782delC	p.A261fs	.	.	156.0	10.0	87.0	0.0	.	.	Atlas-Indel
ZNF527	84503	hgsc.bcm.edu	37	19	37879579	37879579	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	ZNF527	NM_032453	exon5	c.627delT	p.Y209X	.	.	151.0	10.0	87.0	0.0	.	.	Atlas-Indel
RLN2	6019	hgsc.bcm.edu	37	9	5304561	5304561	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	RLN2	NM_005059	exon1	c.21delC	p.F7fs	.	.	224.0	16.0	156.0	0.0	.	.	Atlas-Indel
MCCC1	56922	hgsc.bcm.edu	37	3	182788998	182788998	+	Splice_Site	DEL	T	T	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	MCCC1	NM_020166	exon7	c.639+1A>-	.	.	.	250.0	17.0	144.0	0.0	.	.	Atlas-Indel
TM6SF1	53346	hgsc.bcm.edu	37	15	83790732	83790732	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	TM6SF1	NM_001144903	exon5	c.457delG	p.V153fs	.	.	220.0	15.0	148.0	0.0	.	.	Atlas-Indel
C10orf105	414152	hgsc.bcm.edu	37	10	73476077	73476077	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	.	NM_001168390	exon2	c.19delA	p.S7fs	.	.	178.0	11.0	182.0	0.0	.	.	Atlas-Indel
PDE12	201626	hgsc.bcm.edu	37	3	57545384	57545384	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	PDE12	NM_177966	exon3	c.1482delT	p.C494fs	.	.	211.0	13.0	166.0	0.0	.	.	Atlas-Indel
DDX58	23586	hgsc.bcm.edu	37	9	32488833	32488833	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	DDX58	NM_014314	exon7	c.853delT	p.F285fs	.	.	187.0	13.0	140.0	0.0	.	.	Atlas-Indel
ANKRD26	22852	hgsc.bcm.edu	37	10	27324168	27324168	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	ANKRD26	NM_014915	exon24	c.3212delG	p.S1071fs	.	.	135.0	10.0	138.0	0.0	.	.	Atlas-Indel
PGM1	5236	hgsc.bcm.edu	37	1	64125267	64125267	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	PGM1	NM_001172818	exon11	c.1663delG	p.A555fs	.	.	229.0	20.0	160.0	0.0	.	.	Atlas-Indel
PAPOLA	10914	hgsc.bcm.edu	37	14	96991682	96991682	+	Frame_Shift_Del	DEL	A	A	-	rs35783174		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	PAPOLA	NM_001252006	exon4	c.284delG	p.G95fs	.	.	135.0	10.0	112.0	0.0	.	.	Atlas-Indel
AZI2	64343	hgsc.bcm.edu	37	3	28373874	28373874	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	AZI2	NM_001134432	exon6	c.634delC	p.L212X	.	.	199.0	16.0	141.0	0.0	.	.	Atlas-Indel
UBE2E1	7324	hgsc.bcm.edu	37	3	23929187	23929187	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	UBE2E1	NM_003341	exon4	c.332delC	p.P111fs	.	.	179.0	11.0	139.0	0.0	.	.	Atlas-Indel
POLR1A	25885	hgsc.bcm.edu	37	2	86265933	86265933	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	POLR1A	NM_015425	exon27	c.3925delC	p.Q1309fs	.	.	220.0	14.0	157.0	0.0	.	.	Atlas-Indel
CECR1	51816	hgsc.bcm.edu	37	22	17690247	17690247	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	CECR1	NM_017424	exon1	c.322delG	p.G108fs	.	.	161.0	10.0	163.0	0.0	.	.	Atlas-Indel
SLC3A2	6520	hgsc.bcm.edu	37	11	62649372	62649372	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	SLC3A2	NM_001012662	exon5	c.737delA	p.K246fs	.	.	122.0	10.0	99.0	0.0	.	.	Atlas-Indel
CPSF3L	54973	hgsc.bcm.edu	37	1	1256455	1256455	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	CPSF3L	NM_001256456	exon4	c.66delC	p.G22fs	.	.	199.0	12.0	194.0	0.0	.	.	Atlas-Indel
GOLGA2	2801	hgsc.bcm.edu	37	9	131036199	131036199	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	GOLGA2	NM_004486	exon2	c.138delG	p.K46fs	.	.	187.0	14.0	182.0	0.0	.	.	Atlas-Indel
TBX10	347853	hgsc.bcm.edu	37	11	67402373	67402373	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	TBX10	NM_005995	exon3	c.292delT	p.F98fs	.	.	178.0	11.0	107.0	0.0	.	.	Atlas-Indel
PLAU	5328	hgsc.bcm.edu	37	10	75673438	75673438	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	PLAU	NM_002658	exon7	c.601delC	p.R201fs	.	.	186.0	12.0	156.0	0.0	.	.	Atlas-Indel
TAOK2	9344	hgsc.bcm.edu	37	16	29998911	29998911	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	TAOK2	NM_016151	exon16	c.3317delT	p.V1106fs	.	.	179.0	13.0	104.0	0.0	.	.	Atlas-Indel
SLC38A11	151258	hgsc.bcm.edu	37	2	165755103	165755103	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	SLC38A11	NM_001199148	exon11	c.1066delG	p.G356fs	.	.	179.0	11.0	135.0	0.0	.	.	Atlas-Indel
ITGB8	3696	hgsc.bcm.edu	37	7	20438514	20438514	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	ITGB8	NM_002214	exon9	c.1177delG	p.E393fs	.	.	181.0	12.0	135.0	0.0	.	.	Atlas-Indel
ADCY6	112	hgsc.bcm.edu	37	12	49170245	49170245	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	ADCY6	NM_020983	exon7	c.1502delT	p.L501fs	.	.	104.0	10.0	128.0	0.0	.	.	Atlas-Indel
MIR135A1	406925	hgsc.bcm.edu	37	3	52328238	52328238	+	RNA	DEL	C	C	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	.	.	.	.	.	.	.	152.0	10.0	164.0	0.0	.	.	Atlas-Indel
PPP4R1L	55370	hgsc.bcm.edu	37	20	56826860	56826860	+	RNA	DEL	G	G	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	PPP4R1L	.	.	.	.	.	.	286.0	20.0	173.0	0.0	.	.	Atlas-Indel
EDAR	10913	hgsc.bcm.edu	37	2	109546604	109546604	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	EDAR	NM_022336	exon3	c.147delG	p.P49fs	.	.	258.0	17.0	196.0	0.0	.	.	Atlas-Indel
AGL	178	hgsc.bcm.edu	37	1	100380997	100380997	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	AGL	NM_000644	exon31	c.4213delG	p.E1405fs	.	.	173.0	11.0	162.0	0.0	.	.	Atlas-Indel
PKN2	5586	hgsc.bcm.edu	37	1	89273411	89273411	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	PKN2	NM_006256	exon15	c.2054delT	p.I685fs	.	.	134.0	11.0	105.0	0.0	.	.	Atlas-Indel
APEX2	27301	hgsc.bcm.edu	37	X	55033694	55033694	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	APEX2	NM_014481	exon6	c.1382delC	p.A461fs	.	.	147.0	10.0	122.0	0.0	.	.	Atlas-Indel
SLC1A2	6506	hgsc.bcm.edu	37	11	35333900	35333900	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	SLC1A2	NM_004171	exon4	c.407delT	p.V136fs	.	.	157.0	11.0	140.0	0.0	.	.	Atlas-Indel
MAPK4	5596	hgsc.bcm.edu	37	18	48190827	48190827	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	MAPK4	NM_002747	exon2	c.498delT	p.I166fs	.	.	157.0	10.0	106.0	0.0	.	.	Atlas-Indel
C1orf200	644997	hgsc.bcm.edu	37	1	9713912	9713912	+	RNA	DEL	T	T	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	.	.	.	.	.	.	.	181.0	11.0	166.0	0.0	.	.	Atlas-Indel
MYNN	55892	hgsc.bcm.edu	37	3	169504444	169504444	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	MYNN	NM_018657	exon8	c.1810delA	p.I604fs	.	.	154.0	11.0	137.0	0.0	.	.	Atlas-Indel
MME	4311	hgsc.bcm.edu	37	3	154834710	154834710	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	MME	NM_007287	exon7	c.588delG	p.G196fs	.	.	221.0	14.0	133.0	0.0	.	.	Atlas-Indel
SBF2	81846	hgsc.bcm.edu	37	11	9864304	9864304	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	SBF2	NM_030962	exon25	c.3125delC	p.T1042fs	.	.	197.0	12.0	143.0	0.0	.	.	Atlas-Indel
COL9A1	1297	hgsc.bcm.edu	37	6	70963135	70963135	+	Splice_Site	DEL	A	A	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	COL9A1	NM_001851	exon27	c.1720-2T>-	.	.	.	257.0	20.0	212.0	0.0	.	.	Atlas-Indel
HELQ	113510	hgsc.bcm.edu	37	4	84361142	84361142	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	HELQ	NM_133636	exon8	c.1683delG	p.K561fs	.	.	367.0	24.0	352.0	0.0	.	.	Atlas-Indel
ABCB4	5244	hgsc.bcm.edu	37	7	87081038	87081038	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	ABCB4	NM_018850	exon7	c.610delG	p.A204fs	.	.	182.0	13.0	137.0	0.0	.	.	Atlas-Indel
PNPLA4	8228	hgsc.bcm.edu	37	X	7894068	7894068	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	PNPLA4	NM_004650	exon2	c.94delC	p.L32fs	.	.	154.0	10.0	159.0	0.0	.	.	Atlas-Indel
PLEKHA8P1	51054	hgsc.bcm.edu	37	12	45567655	45567655	+	RNA	DEL	T	T	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	PLEKHA8P1	.	.	.	.	.	.	246.0	15.0	205.0	0.0	.	.	Atlas-Indel
ADCY1	107	hgsc.bcm.edu	37	7	45743294	45743294	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	ADCY1	NM_021116	exon16	c.2666delT	p.M889fs	.	.	249.0	15.0	215.0	0.0	.	.	Atlas-Indel
RYR2	6262	hgsc.bcm.edu	37	1	237693788	237693788	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	RYR2	NM_001035	exon25	c.2883delG	p.V961fs	.	.	131.0	10.0	70.0	0.0	.	.	Atlas-Indel
NOP14	8602	hgsc.bcm.edu	37	4	2950011	2950011	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	NOP14	NM_003703	exon9	c.1408delT	p.L470X	.	.	158.0	10.0	134.0	0.0	.	.	Atlas-Indel
AKAP6	9472	hgsc.bcm.edu	37	14	33290855	33290855	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	AKAP6	NM_004274	exon13	c.3835delG	p.A1279fs	.	.	156.0	11.0	121.0	0.0	.	.	Atlas-Indel
HEATR4	399671	hgsc.bcm.edu	37	14	73945358	73945358	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	HEATR4	NM_203309	exon17	c.3035delC	p.S1012fs	.	.	129.0	10.0	121.0	0.0	.	.	Atlas-Indel
EPB41L3	23136	hgsc.bcm.edu	37	18	5428316	5428316	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	EPB41L3	NM_012307	exon9	c.1062delA	p.G354fs	.	.	160.0	10.0	123.0	0.0	.	.	Atlas-Indel
AHCTF1	25909	hgsc.bcm.edu	37	1	247007131	247007131	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	AHCTF1	NM_015446	exon34	c.6519delC	p.N2173fs	.	.	979.0	62.0	659.0	0.0	.	.	Atlas-Indel
ATG5	9474	hgsc.bcm.edu	37	6	106727570	106727570	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	ATG5	NM_004849	exon5	c.445delG	p.D149fs	.	.	161.0	10.0	178.0	0.0	.	.	Atlas-Indel
PRODH	5625	hgsc.bcm.edu	37	22	18905911	18905911	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	PRODH	NM_016335	exon12	c.1346delA	p.Q449fs	.	.	224.0	14.0	169.0	0.0	.	.	Atlas-Indel
OTUD7B	56957	hgsc.bcm.edu	37	1	149922079	149922079	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	OTUD7B	NM_020205	exon8	c.892delC	p.H298fs	.	.	179.0	12.0	85.0	0.0	.	.	Atlas-Indel
PCOLCE2	26577	hgsc.bcm.edu	37	3	142548586	142548586	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	PCOLCE2	NM_013363	exon6	c.814delC	p.L272fs	.	.	155.0	10.0	187.0	0.0	.	.	Atlas-Indel
USP9X	8239	hgsc.bcm.edu	37	X	41069811	41069811	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	USP9X	NM_001039591	exon33	c.5064delA	p.E1688fs	.	.	160.0	12.0	113.0	0.0	.	.	Atlas-Indel
PPWD1	23398	hgsc.bcm.edu	37	5	64859205	64859205	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	PPWD1	NM_015342	exon1	c.67delG	p.E23fs	.	.	154.0	10.0	108.0	0.0	.	.	Atlas-Indel
LEPREL4	10609	hgsc.bcm.edu	37	17	39959614	39959614	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	LEPREL4	NM_006455	exon7	c.1217delA	p.E406fs	.	.	219.0	14.0	252.0	0.0	.	.	Atlas-Indel
C1orf27	54953	hgsc.bcm.edu	37	1	186367553	186367553	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	C1orf27	NM_017847	exon10	c.888delC	p.P296fs	.	.	160.0	14.0	99.0	0.0	.	.	Atlas-Indel
SLC35C2	51006	hgsc.bcm.edu	37	20	44979150	44979150	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	SLC35C2	NM_173179	exon10	c.982delA	p.K328fs	.	.	180.0	11.0	125.0	0.0	.	.	Atlas-Indel
POU1F1	5449	hgsc.bcm.edu	37	3	87309133	87309133	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	POU1F1	NM_001122757	exon6	c.866delG	p.C289fs	.	.	231.0	14.0	194.0	0.0	.	.	Atlas-Indel
WDR41	55255	hgsc.bcm.edu	37	5	76729042	76729042	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	WDR41	NM_018268	exon13	c.1299delT	p.N433fs	.	.	162.0	10.0	153.0	0.0	.	.	Atlas-Indel
NPAS4	266743	hgsc.bcm.edu	37	11	66193455	66193455	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	NPAS4	NM_178864	exon8	c.2403delG	p.T801fs	.	.	181.0	12.0	129.0	0.0	.	.	Atlas-Indel
KIF9	64147	hgsc.bcm.edu	37	3	47282419	47282419	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	KIF9	NM_182902	exon17	c.1797delC	p.N599fs	.	.	146.0	10.0	122.0	0.0	.	.	Atlas-Indel
LTK	4058	hgsc.bcm.edu	37	15	41796336	41796336	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	LTK	NM_002344	exon20	c.2454delA	p.P818fs	.	.	157.0	11.0	170.0	0.0	.	.	Atlas-Indel
PLEC	5339	hgsc.bcm.edu	37	8	144991218	144991218	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	PLEC	NM_201380	exon32	c.13183delA	p.I4395fs	.	.	248.0	15.0	99.0	0.0	.	.	Atlas-Indel
RAD18	56852	hgsc.bcm.edu	37	3	8977726	8977726	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	RAD18	NM_020165	exon7	c.719delG	p.R240fs	.	.	175.0	11.0	131.0	0.0	.	.	Atlas-Indel
PLIN1	5346	hgsc.bcm.edu	37	15	90210976	90210976	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	PLIN1	NM_001145311	exon7	c.821delG	p.R274fs	.	.	150.0	11.0	97.0	0.0	.	.	Atlas-Indel
SOGA2	23255	hgsc.bcm.edu	37	18	8825894	8825894	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	.	NM_015210	exon15	c.4385delA	p.K1462fs	.	.	155.0	10.0	125.0	0.0	.	.	Atlas-Indel
NBEAL1	65065	hgsc.bcm.edu	37	2	203974873	203974873	+	Splice_Site	DEL	T	T	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	NBEAL1	NM_001114132	exon14	c.1863-1T>-	.	.	.	166.0	11.0	98.0	0.0	.	.	Atlas-Indel
DHX32	55760	hgsc.bcm.edu	37	10	127542640	127542640	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	DHX32	NM_018180	exon4	c.983delG	p.R328fs	.	.	156.0	10.0	148.0	0.0	.	.	Atlas-Indel
MYH3	4621	hgsc.bcm.edu	37	17	10546255	10546255	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	MYH3	NM_002470	exon15	c.1470delC	p.F490fs	.	.	110.0	10.0	109.0	0.0	.	.	Atlas-Indel
PACRG	135138	hgsc.bcm.edu	37	6	163483224	163483224	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	PACRG	NM_001080379	exon3	c.333delG	p.L111fs	.	.	210.0	13.0	165.0	0.0	.	.	Atlas-Indel
OR10G2	26534	hgsc.bcm.edu	37	14	22102864	22102864	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	OR10G2	NM_001005466	exon1	c.136delA	p.N46fs	.	.	231.0	14.0	243.0	0.0	.	.	Atlas-Indel
MXRA7	439921	hgsc.bcm.edu	37	17	74681205	74681205	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	MXRA7	NM_001008529	exon3	c.450delA	p.G150fs	.	.	152.0	10.0	158.0	0.0	.	.	Atlas-Indel
GRB14	2888	hgsc.bcm.edu	37	2	165378510	165378510	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	GRB14	NM_004490	exon6	c.797delC	p.S266fs	.	.	213.0	13.0	136.0	0.0	.	.	Atlas-Indel
PRKAG2	51422	hgsc.bcm.edu	37	7	151372597	151372597	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	PRKAG2	NM_016203	exon4	c.594delG	p.P198fs	.	.	174.0	14.0	111.0	0.0	.	.	Atlas-Indel
MICALCL	84953	hgsc.bcm.edu	37	11	12345559	12345559	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	MICALCL	NM_032867	exon5	c.1576delG	p.E526fs	.	.	178.0	11.0	136.0	0.0	.	.	Atlas-Indel
GGPS1	9453	hgsc.bcm.edu	37	1	235505913	235505913	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	GGPS1	NM_001037277	exon4	c.728delT	p.I243fs	.	.	114.0	12.0	49.0	0.0	.	.	Atlas-Indel
ATP13A1	57130	hgsc.bcm.edu	37	19	19774122	19774122	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	ATP13A1	NM_020410	exon1	c.355delC	p.H119fs	.	.	191.0	12.0	187.0	0.0	.	.	Atlas-Indel
NAIP	4671	hgsc.bcm.edu	37	5	70307197	70307197	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	NAIP	NM_004536	exon5	c.574delC	p.Q192fs	.	.	163.0	10.0	145.0	0.0	.	.	Atlas-Indel
DYRK1A	1859	hgsc.bcm.edu	37	21	38852951	38852951	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	DYRK1A	NM_001396	exon4	c.338delC	p.A113fs	.	.	108.0	10.0	101.0	0.0	.	.	Atlas-Indel
MTFR2	113115	hgsc.bcm.edu	37	6	136562707	136562707	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	.	NM_138419	exon5	c.390delT	p.N130fs	.	.	138.0	10.0	116.0	0.0	.	.	Atlas-Indel
DSG3	1830	hgsc.bcm.edu	37	18	29037066	29037066	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	DSG3	NM_001944	exon3	c.194delC	p.S65X	.	.	139.0	10.0	86.0	0.0	.	.	Atlas-Indel
ZNF222	7673	hgsc.bcm.edu	37	19	44537092	44537092	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	ZNF222	NM_001129996	exon4	c.1384delG	p.E462fs	.	.	157.0	10.0	77.0	0.0	.	.	Atlas-Indel
ZKSCAN3	80317	hgsc.bcm.edu	37	6	28333941	28333941	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	ZKSCAN3	NM_024493	exon6	c.1495delC	p.Q499fs	.	.	140.0	11.0	84.0	0.0	.	.	Atlas-Indel
NEFH	4744	hgsc.bcm.edu	37	22	29885884	29885884	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	NEFH	NM_021076	exon4	c.2254delT	p.S752fs	.	.	164.0	11.0	135.0	0.0	.	.	Atlas-Indel
SCOC	60592	hgsc.bcm.edu	37	4	141302170	141302170	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	SCOC	NM_001153484	exon4	c.391delG	p.E131fs	.	.	165.0	11.0	161.0	0.0	.	.	Atlas-Indel
TTN	7273	hgsc.bcm.edu	37	2	179438689	179438689	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	TTN	NM_001267550	exon326	c.72171delA	p.P24057fs	.	.	192.0	12.0	147.0	0.0	.	.	Atlas-Indel
COL6A3	1293	hgsc.bcm.edu	37	2	238277223	238277223	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	COL6A3	NM_004369	exon10	c.4884delT	p.P1628fs	.	.	129.0	10.0	117.0	0.0	.	.	Atlas-Indel
DCDC5	100506627	hgsc.bcm.edu	37	11	30921144	30921144	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	DCDC5	NM_020869	exon15	c.2022delG	p.K674fs	.	.	198.0	12.0	130.0	0.0	.	.	Atlas-Indel
PTPRA	5786	hgsc.bcm.edu	37	20	2985763	2985763	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	PTPRA	NM_002836	exon14	c.799delG	p.E267fs	.	.	224.0	15.0	157.0	0.0	.	.	Atlas-Indel
CCDC38	120935	hgsc.bcm.edu	37	12	96292432	96292432	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	CCDC38	NM_182496	exon6	c.448delG	p.A150fs	.	.	315.0	19.0	310.0	0.0	.	.	Atlas-Indel
ATXN7L2	127002	hgsc.bcm.edu	37	1	110033680	110033680	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	ATXN7L2	NM_153340	exon10	c.1494delG	p.M498fs	.	.	162.0	11.0	164.0	0.0	.	.	Atlas-Indel
AGO2	27161	hgsc.bcm.edu	37	8	141595382	141595382	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	.	NM_012154	exon2	c.52delA	p.I18fs	.	.	181.0	12.0	98.0	0.0	.	.	Atlas-Indel
AKAP7	9465	hgsc.bcm.edu	37	6	131540900	131540900	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	AKAP7	NM_016377	exon7	c.801delG	p.K267fs	.	.	208.0	15.0	242.0	0.0	.	.	Atlas-Indel
GK5	256356	hgsc.bcm.edu	37	3	141917719	141917719	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	GK5	NM_001039547	exon5	c.469delA	p.T157fs	.	.	192.0	12.0	158.0	0.0	.	.	Atlas-Indel
PRSS53	339105	hgsc.bcm.edu	37	16	31098992	31098992	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	PRSS53	NM_001039503	exon3	c.109delA	p.K37fs	.	.	128.0	11.0	114.0	0.0	.	.	Atlas-Indel
MSL3	10943	hgsc.bcm.edu	37	X	11776451	11776451	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	MSL3	NM_078628	exon1	c.68delA	p.D23fs	.	.	127.0	11.0	111.0	0.0	.	.	Atlas-Indel
TRAP1	10131	hgsc.bcm.edu	37	16	3708188	3708188	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	TRAP1	NM_016292	exon18	c.2058delT	p.P686fs	.	.	141.0	10.0	112.0	0.0	.	.	Atlas-Indel
SPATA31D4	389761	hgsc.bcm.edu	37	9	84545071	84545071	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	.	NM_001145197	exon3	c.288delG	p.L96fs	.	.	180.0	12.0	158.0	0.0	.	.	Atlas-Indel
GPR126	57211	hgsc.bcm.edu	37	6	142741019	142741019	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	GPR126	NM_198569	exon22	c.3096delG	p.M1032fs	.	.	221.0	15.0	215.0	0.0	.	.	Atlas-Indel
PCDHGA1	56114	hgsc.bcm.edu	37	5	140711785	140711785	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	PCDHGA1	NM_018912	exon1	c.1533delT	p.T511fs	.	.	149.0	11.0	111.0	0.0	.	.	Atlas-Indel
ZCWPW1	55063	hgsc.bcm.edu	37	7	100013617	100013617	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	ZCWPW1	NM_001258008	exon8	c.736delG	p.G246fs	.	.	207.0	14.0	153.0	0.0	.	.	Atlas-Indel
FER1L6	654463	hgsc.bcm.edu	37	8	125115501	125115501	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	FER1L6	NM_001039112	exon39	c.5239delC	p.Q1747fs	.	.	188.0	12.0	94.0	0.0	.	.	Atlas-Indel
ABCF1	23	hgsc.bcm.edu	37	6	30553664	30553664	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	ABCF1	NM_001025091	exon17	c.1608delC	p.F536fs	.	.	123.0	10.0	57.0	0.0	.	.	Atlas-Indel
ANKS1B	56899	hgsc.bcm.edu	37	12	99446958	99446958	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	.	NM_152788	exon17	c.2756delT	p.I919fs	.	.	200.0	12.0	187.0	0.0	.	.	Atlas-Indel
CDH9	1007	hgsc.bcm.edu	37	5	26988315	26988315	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	CDH9	NM_016279	exon2	c.127delG	p.D43fs	.	.	205.0	14.0	207.0	0.0	.	.	Atlas-Indel
GTSE1	51512	hgsc.bcm.edu	37	22	46704068	46704068	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	GTSE1	NM_016426	exon3	c.100delG	p.E34fs	.	.	174.0	11.0	127.0	0.0	.	.	Atlas-Indel
PIK3C2A	5286	hgsc.bcm.edu	37	11	17150951	17150951	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	PIK3C2A	NM_002645	exon12	c.2296delG	p.G766fs	.	.	167.0	13.0	126.0	0.0	.	.	Atlas-Indel
NFIX	4784	hgsc.bcm.edu	37	19	13184726	13184726	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	NFIX	NM_001271043	exon5	c.727delG	p.V243fs	.	.	152.0	10.0	131.0	0.0	.	.	Atlas-Indel
C1orf173	127254	hgsc.bcm.edu	37	1	75112405	75112405	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	C1orf173	NM_001002912	exon3	c.190delT	p.Y64fs	.	.	208.0	14.0	166.0	0.0	.	.	Atlas-Indel
LMBR1	64327	hgsc.bcm.edu	37	7	156589160	156589160	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	LMBR1	NM_022458	exon5	c.347delC	p.S116fs	.	.	159.0	10.0	101.0	0.0	.	.	Atlas-Indel
DOCK5	80005	hgsc.bcm.edu	37	8	25240190	25240190	+	Splice_Site	DEL	A	A	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	DOCK5	NM_024940	exon40	c.4027-1A>-	.	.	.	78.0	10.0	74.0	0.0	.	.	Atlas-Indel
WDR70	55100	hgsc.bcm.edu	37	5	37703139	37703139	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	WDR70	NM_018034	exon13	c.1365delC	p.F455fs	.	.	194.0	14.0	163.0	0.0	.	.	Atlas-Indel
USP19	10869	hgsc.bcm.edu	37	3	49153294	49153294	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	USP19	NM_001199161	exon11	c.1556delT	p.L519fs	.	.	205.0	13.0	171.0	0.0	.	.	Atlas-Indel
ASPM	259266	hgsc.bcm.edu	37	1	197115430	197115430	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	ASPM	NM_001206846	exon1	c.139delT	p.S47fs	.	.	104.0	10.0	57.0	0.0	.	.	Atlas-Indel
PEAK1	0	hgsc.bcm.edu	37	15	77472174	77472174	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	.	NM_024776	exon5	c.2096delG	p.R699fs	.	.	144.0	10.0	126.0	0.0	.	.	Atlas-Indel
UBXN7	26043	hgsc.bcm.edu	37	3	196089423	196089423	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	UBXN7	NM_015562	exon9	c.971delC	p.S324fs	.	.	163.0	10.0	152.0	0.0	.	.	Atlas-Indel
GPR113	165082	hgsc.bcm.edu	37	2	26540962	26540962	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	GPR113	NM_001145168	exon2	c.209delT	p.L70fs	.	.	161.0	13.0	107.0	0.0	.	.	Atlas-Indel
MIR133B	442890	hgsc.bcm.edu	37	6	52013737	52013737	+	RNA	DEL	C	C	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	.	.	.	.	.	.	.	92.0	10.0	68.0	0.0	.	.	Atlas-Indel
PSMD2	5708	hgsc.bcm.edu	37	3	184025287	184025287	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	PSMD2	NM_002808	exon17	c.2176delA	p.I726fs	.	.	159.0	11.0	120.0	0.0	.	.	Atlas-Indel
NUAK2	81788	hgsc.bcm.edu	37	1	205275421	205275421	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	NUAK2	NM_030952	exon5	c.586delC	p.L196fs	.	.	167.0	11.0	94.0	0.0	.	.	Atlas-Indel
ASIC4	55515	hgsc.bcm.edu	37	2	220402417	220402417	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	.	NM_182847	exon8	c.1788delT	p.T596fs	.	.	159.0	10.0	125.0	0.0	.	.	Atlas-Indel
RBM27	54439	hgsc.bcm.edu	37	5	145608566	145608566	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	RBM27	NM_018989	exon4	c.360delT	p.S120fs	.	.	164.0	14.0	171.0	0.0	.	.	Atlas-Indel
PLXNA1	5361	hgsc.bcm.edu	37	3	126710277	126710277	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	PLXNA1	NM_032242	exon2	c.1244delT	p.L415fs	.	.	215.0	14.0	196.0	0.0	.	.	Atlas-Indel
KLHDC8A	55220	hgsc.bcm.edu	37	1	205308534	205308534	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	KLHDC8A	NM_001271864	exon5	c.546delA	p.G182fs	.	.	161.0	10.0	67.0	0.0	.	.	Atlas-Indel
GH2	2689	hgsc.bcm.edu	37	17	61958073	61958073	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	GH2	NM_022557	exon4	c.516delA	p.G172fs	.	.	168.0	11.0	124.0	0.0	.	.	Atlas-Indel
AP4E1	23431	hgsc.bcm.edu	37	15	51289642	51289642	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	AP4E1	NM_007347	exon18	c.2465delC	p.S822X	.	.	163.0	11.0	107.0	0.0	.	.	Atlas-Indel
CDH16	1014	hgsc.bcm.edu	37	16	66947073	66947073	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	CDH16	NM_004062	exon9	c.1016delG	p.R339fs	.	.	127.0	10.0	120.0	0.0	.	.	Atlas-Indel
OR8H1	219469	hgsc.bcm.edu	37	11	56057710	56057710	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	OR8H1	NM_001005199	exon1	c.830delA	p.Y277fs	.	.	217.0	14.0	126.0	0.0	.	.	Atlas-Indel
CPNE6	9362	hgsc.bcm.edu	37	14	24542776	24542776	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	CPNE6	NM_006032	exon3	c.236delA	p.Y79fs	.	.	100.0	10.0	128.0	0.0	.	.	Atlas-Indel
DLC1	10395	hgsc.bcm.edu	37	8	13356655	13356655	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	DLC1	NM_182643	exon2	c.927delG	p.K309fs	.	.	162.0	10.0	188.0	0.0	.	.	Atlas-Indel
DENND6A	201627	hgsc.bcm.edu	37	3	57620465	57620465	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	.	NM_152678	exon13	c.1165delC	p.L389X	.	.	164.0	14.0	127.0	0.0	.	.	Atlas-Indel
CHD2	1106	hgsc.bcm.edu	37	15	93540530	93540530	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	CHD2	NM_001271	exon30	c.3781delT	p.W1261fs	.	.	170.0	12.0	142.0	0.0	.	.	Atlas-Indel
FAM160A1	729830	hgsc.bcm.edu	37	4	152571011	152571011	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	.	NM_001109977	exon11	c.1817delG	p.G606fs	.	.	113.0	12.0	141.0	0.0	.	.	Atlas-Indel
COL7A1	1294	hgsc.bcm.edu	37	3	48610137	48610137	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	COL7A1	NM_000094	exon87	c.6868delG	p.G2290fs	.	.	192.0	12.0	136.0	0.0	.	.	Atlas-Indel
HGC6.3	0	hgsc.bcm.edu	37	6	168377111	168377111	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	.	NM_001129895	exon1	c.223delA	p.T75fs	.	.	166.0	10.0	108.0	0.0	.	.	Atlas-Indel
CALHM1	255022	hgsc.bcm.edu	37	10	105215220	105215220	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	CALHM1	NM_001001412	exon2	c.841delG	p.D281fs	.	.	172.0	11.0	185.0	0.0	.	.	Atlas-Indel
SDS	10993	hgsc.bcm.edu	37	12	113835064	113835064	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	SDS	NM_006843	exon6	c.560delA	p.D187fs	.	.	223.0	14.0	231.0	0.0	.	.	Atlas-Indel
ZNF350	59348	hgsc.bcm.edu	37	19	52468815	52468815	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	ZNF350	NM_021632	exon5	c.892delG	p.G298fs	.	.	152.0	10.0	87.0	0.0	.	.	Atlas-Indel
L3MBTL1	26013	hgsc.bcm.edu	37	20	42143323	42143323	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	L3MBTL1	NM_032107	exon4	c.342delG	p.Q114fs	.	.	160.0	10.0	104.0	0.0	.	.	Atlas-Indel
ARHGAP10	79658	hgsc.bcm.edu	37	4	148744064	148744064	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	ARHGAP10	NM_024605	exon3	c.267delA	p.E89fs	.	.	157.0	10.0	124.0	0.0	.	.	Atlas-Indel
TTC39C	125488	hgsc.bcm.edu	37	18	21698147	21698147	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	TTC39C	NM_001135993	exon8	c.1136delT	p.L379fs	.	.	129.0	11.0	115.0	0.0	.	.	Atlas-Indel
GCC2	9648	hgsc.bcm.edu	37	2	109088158	109088158	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	GCC2	NM_181453	exon6	c.2372delC	p.A791fs	.	.	347.0	21.0	274.0	0.0	.	.	Atlas-Indel
NOB1	28987	hgsc.bcm.edu	37	16	69782138	69782138	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	NOB1	NM_014062	exon7	c.822delC	p.F274fs	.	.	164.0	10.0	136.0	0.0	.	.	Atlas-Indel
C11orf84	144097	hgsc.bcm.edu	37	11	63586276	63586276	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	C11orf84	NM_138471	exon5	c.735delG	p.E245fs	.	.	117.0	10.0	97.0	0.0	.	.	Atlas-Indel
ACIN1	22985	hgsc.bcm.edu	37	14	23549379	23549379	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	ACIN1	NM_001164814	exon6	c.1340delC	p.A447fs	.	.	161.0	10.0	128.0	0.0	.	.	Atlas-Indel
UIMC1	51720	hgsc.bcm.edu	37	5	176396191	176396191	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	UIMC1	NM_016290	exon6	c.566delC	p.T189fs	.	.	238.0	16.0	171.0	0.0	.	.	Atlas-Indel
ARNT	405	hgsc.bcm.edu	37	1	150808762	150808762	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	ARNT	NM_001668	exon7	c.695delT	p.L232fs	.	.	194.0	12.0	75.0	0.0	.	.	Atlas-Indel
SRP72	6731	hgsc.bcm.edu	37	4	57333820	57333820	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	SRP72	NM_001267722	exon1	c.18delC	p.S6fs	.	.	134.0	10.0	135.0	0.0	.	.	Atlas-Indel
ABL2	27	hgsc.bcm.edu	37	1	179078242	179078242	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	ABL2	NM_007314	exon12	c.2161delA	p.S721fs	.	.	148.0	10.0	80.0	0.0	.	.	Atlas-Indel
HMGCLL1	54511	hgsc.bcm.edu	37	6	55364043	55364043	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	HMGCLL1	NM_019036	exon7	c.688delG	p.V230X	.	.	181.0	12.0	109.0	0.0	.	.	Atlas-Indel
TMC4	147798	hgsc.bcm.edu	37	19	54672280	54672280	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	TMC4	NM_001145303	exon4	c.588delA	p.P196fs	.	.	195.0	13.0	127.0	0.0	.	.	Atlas-Indel
FRMD7	90167	hgsc.bcm.edu	37	X	131211907	131211907	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	FRMD7	NM_194277	exon12	c.2139delA	p.L713fs	.	.	233.0	14.0	181.0	0.0	.	.	Atlas-Indel
SLC47A2	146802	hgsc.bcm.edu	37	17	19617255	19617255	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	SLC47A2	NM_152908	exon4	c.327delC	p.G109fs	.	.	131.0	11.0	133.0	0.0	.	.	Atlas-Indel
DIP2A	23181	hgsc.bcm.edu	37	21	47977529	47977529	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	DIP2A	NM_015151	exon31	c.3660delG	p.V1220fs	.	.	125.0	11.0	124.0	0.0	.	.	Atlas-Indel
ATG14	22863	hgsc.bcm.edu	37	14	55852688	55852688	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	ATG14	NM_014924	exon5	c.537delG	p.K179fs	.	.	204.0	16.0	200.0	0.0	.	.	Atlas-Indel
ALDH4A1	8659	hgsc.bcm.edu	37	1	19213000	19213000	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	ALDH4A1	NM_003748	exon4	c.256delA	p.N86fs	.	.	142.0	13.0	135.0	0.0	.	.	Atlas-Indel
MAP3K8	1326	hgsc.bcm.edu	37	10	30740592	30740592	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	MAP3K8	NM_001244134	exon5	c.791delC	p.T264fs	.	.	120.0	11.0	94.0	0.0	.	.	Atlas-Indel
NUDT6	11162	hgsc.bcm.edu	37	4	123833749	123833749	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	NUDT6	NM_007083	exon3	c.473delT	p.I158fs	.	.	182.0	11.0	123.0	0.0	.	.	Atlas-Indel
DHX30	22907	hgsc.bcm.edu	37	3	47884619	47884619	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	DHX30	NM_138615	exon9	c.812delT	p.V271fs	.	.	177.0	12.0	148.0	0.0	.	.	Atlas-Indel
C1orf228	339541	hgsc.bcm.edu	37	1	45155414	45155414	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	.	NM_001145636	exon2	c.44delG	p.S15fs	.	.	177.0	15.0	128.0	0.0	.	.	Atlas-Indel
WDR11	55717	hgsc.bcm.edu	37	10	122625230	122625230	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	WDR11	NM_018117	exon7	c.967delA	p.I323fs	.	.	148.0	13.0	108.0	0.0	.	.	Atlas-Indel
GOLIM4	27333	hgsc.bcm.edu	37	3	167766089	167766089	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	GOLIM4	NM_014498	exon2	c.253delG	p.A85fs	.	.	314.0	19.0	241.0	0.0	.	.	Atlas-Indel
PLK1	5347	hgsc.bcm.edu	37	16	23695373	23695373	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	PLK1	NM_005030	exon5	c.998delA	p.D333fs	.	.	153.0	10.0	115.0	0.0	.	.	Atlas-Indel
CABP2	51475	hgsc.bcm.edu	37	11	67290137	67290137	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	CABP2	NM_016366	exon2	c.94delA	p.S32fs	.	.	139.0	10.0	39.0	0.0	.	.	Atlas-Indel
MEF2C	4208	hgsc.bcm.edu	37	5	88119592	88119592	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	MEF2C	NM_001193350	exon2	c.15delG	p.K5fs	.	.	247.0	18.0	190.0	0.0	.	.	Atlas-Indel
MAP4K5	11183	hgsc.bcm.edu	37	14	50933308	50933308	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	MAP4K5	NM_006575	exon11	c.731delC	p.T244fs	.	.	159.0	10.0	112.0	0.0	.	.	Atlas-Indel
SUCLA2	8803	hgsc.bcm.edu	37	13	48562793	48562793	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	SUCLA2	NM_003850	exon4	c.418delT	p.L140fs	.	.	160.0	10.0	118.0	0.0	.	.	Atlas-Indel
SMTNL1	219537	hgsc.bcm.edu	37	11	57310817	57310817	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	SMTNL1	NM_001105565	exon1	c.701delC	p.A234fs	.	.	151.0	10.0	129.0	0.0	.	.	Atlas-Indel
CDK5RAP2	55755	hgsc.bcm.edu	37	9	123152026	123152026	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	CDK5RAP2	NM_018249	exon37	c.5619delC	p.N1873fs	.	.	157.0	11.0	156.0	0.0	.	.	Atlas-Indel
KTN1	3895	hgsc.bcm.edu	37	14	56114751	56114751	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	KTN1	NM_004986	exon20	c.2215delG	p.E739fs	.	.	160.0	10.0	176.0	0.0	.	.	Atlas-Indel
CHMP6	79643	hgsc.bcm.edu	37	17	78969500	78969500	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	CHMP6	NM_024591	exon4	c.289delG	p.E97fs	.	.	198.0	14.0	162.0	0.0	.	.	Atlas-Indel
FAM194B	220081	hgsc.bcm.edu	37	13	46154112	46154112	+	Splice_Site	DEL	A	A	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	FAM194B	NM_182542	exon8	c.920-2T>-	.	.	.	183.0	11.0	108.0	0.0	.	.	Atlas-Indel
SLC4A5	57835	hgsc.bcm.edu	37	2	74451994	74451994	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	SLC4A5	NM_021196	exon24	c.3268delG	p.G1090fs	.	.	289.0	19.0	189.0	0.0	.	.	Atlas-Indel
CCDC174	51244	hgsc.bcm.edu	37	3	14709638	14709638	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	.	NM_016474	exon9	c.901delC	p.Q301fs	.	.	221.0	16.0	152.0	0.0	.	.	Atlas-Indel
SIGLEC6	946	hgsc.bcm.edu	37	19	52034030	52034030	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	SIGLEC6	NM_198845	exon3	c.612delA	p.P204fs	.	.	159.0	14.0	126.0	0.0	.	.	Atlas-Indel
NOL6	65083	hgsc.bcm.edu	37	9	33464082	33464082	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	NOL6	NM_022917	exon22	c.2858delA	p.Q953fs	.	.	167.0	11.0	137.0	0.0	.	.	Atlas-Indel
NR2E1	7101	hgsc.bcm.edu	37	6	108499301	108499301	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	NR2E1	NM_003269	exon5	c.497delA	p.Y166fs	.	.	157.0	11.0	122.0	0.0	.	.	Atlas-Indel
RIC8A	60626	hgsc.bcm.edu	37	11	211289	211289	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	RIC8A	NM_021932	exon5	c.908delT	p.M303fs	.	.	158.0	10.0	150.0	0.0	.	.	Atlas-Indel
SLCO6A1	133482	hgsc.bcm.edu	37	5	101774421	101774421	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	SLCO6A1	NM_173488	exon7	c.1177delG	p.A393fs	.	.	143.0	11.0	123.0	0.0	.	.	Atlas-Indel
PIK3CB	5291	hgsc.bcm.edu	37	3	138461437	138461437	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	PIK3CB	NM_006219	exon3	c.585delA	p.G195fs	.	.	146.0	10.0	134.0	0.0	.	.	Atlas-Indel
RAG2	5897	hgsc.bcm.edu	37	11	36614735	36614735	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	RAG2	NM_001243785	exon3	c.985delC	p.L329fs	.	.	310.0	20.0	187.0	0.0	.	.	Atlas-Indel
SLIT3	6586	hgsc.bcm.edu	37	5	168100194	168100194	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	SLIT3	NM_001271946	exon33	c.3851delT	p.L1284fs	.	.	151.0	11.0	162.0	0.0	.	.	Atlas-Indel
TMEM104	54868	hgsc.bcm.edu	37	17	72791152	72791152	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	TMEM104	NM_017728	exon7	c.428delT	p.V143fs	.	.	131.0	10.0	147.0	0.0	.	.	Atlas-Indel
HSP90AB1	3326	hgsc.bcm.edu	37	6	44218079	44218079	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	HSP90AB1	NM_007355	exon6	c.699delG	p.E233fs	.	.	165.0	10.0	102.0	0.0	.	.	Atlas-Indel
LUZP4	51213	hgsc.bcm.edu	37	X	114537909	114537909	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	LUZP4	NM_016383	exon3	c.267delT	p.D89fs	.	.	195.0	12.0	131.0	0.0	.	.	Atlas-Indel
LTK	4058	hgsc.bcm.edu	37	15	41797198	41797198	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	LTK	NM_002344	exon16	c.1991delA	p.D664fs	.	.	140.0	10.0	127.0	0.0	.	.	Atlas-Indel
ATG2B	55102	hgsc.bcm.edu	37	14	96807965	96807965	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	ATG2B	NM_018036	exon6	c.819delT	p.N273fs	.	.	103.0	10.0	95.0	0.0	.	.	Atlas-Indel
C5orf51	285636	hgsc.bcm.edu	37	5	41909898	41909898	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	C5orf51	NM_175921	exon3	c.257delA	p.D86fs	.	.	172.0	13.0	129.0	0.0	.	.	Atlas-Indel
DACH1	1602	hgsc.bcm.edu	37	13	72440861	72440861	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	DACH1	NM_080759	exon1	c.48delT	p.P16fs	.	.	179.0	11.0	182.0	0.0	.	.	Atlas-Indel
MYH3	4621	hgsc.bcm.edu	37	17	10535885	10535885	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	MYH3	NM_002470	exon34	c.4865delA	p.D1622fs	.	.	135.0	10.0	123.0	0.0	.	.	Atlas-Indel
COL11A2	1302	hgsc.bcm.edu	37	6	33139837	33139837	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	COL11A2	NM_080680	exon41	c.3033delT	p.P1011fs	.	.	199.0	12.0	96.0	0.0	.	.	Atlas-Indel
CHPF2	54480	hgsc.bcm.edu	37	7	150932436	150932436	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	CHPF2	NM_019015	exon2	c.565delG	p.A189fs	.	.	107.0	10.0	94.0	0.0	.	.	Atlas-Indel
MTOR	2475	hgsc.bcm.edu	37	1	11292498	11292498	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	MTOR	NM_004958	exon16	c.2510delG	p.R837fs	.	.	138.0	11.0	138.0	0.0	.	.	Atlas-Indel
CP	1356	hgsc.bcm.edu	37	3	148927955	148927955	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	CP	NM_000096	exon3	c.607delG	p.D203fs	.	.	139.0	10.0	112.0	0.0	.	.	Atlas-Indel
TBCCD1	55171	hgsc.bcm.edu	37	3	186272330	186272330	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	TBCCD1	NM_001134415	exon6	c.1258delC	p.H420fs	.	.	113.0	10.0	85.0	0.0	.	.	Atlas-Indel
CSPG4	1464	hgsc.bcm.edu	37	15	75980311	75980311	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	CSPG4	NM_001897	exon3	c.3096delT	p.G1032fs	.	.	130.0	10.0	114.0	0.0	.	.	Atlas-Indel
TPM3	7170	hgsc.bcm.edu	37	1	154148611	154148611	+	Frame_Shift_Del	DEL	T	T	-	rs35013279		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	TPM3	NM_152263	exon3	c.358delG	p.A120fs	.	.	247.0	16.0	148.0	0.0	.	.	Atlas-Indel
MAP2K6	5608	hgsc.bcm.edu	37	17	67537867	67537867	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	MAP2K6	NM_002758	exon12	c.977delC	p.S326fs	.	.	171.0	11.0	163.0	0.0	.	.	Atlas-Indel
NYAP2	57624	hgsc.bcm.edu	37	2	226491650	226491650	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	.	NM_020864	exon5	c.1635delG	p.L545fs	.	.	148.0	10.0	104.0	0.0	.	.	Atlas-Indel
MEF2A	4205	hgsc.bcm.edu	37	15	100252908	100252908	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	MEF2A	NM_005587	exon11	c.1431delA	p.R477fs	.	.	195.0	12.0	193.0	0.0	.	.	Atlas-Indel
TUBA3E	112714	hgsc.bcm.edu	37	2	130951451	130951451	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	TUBA3E	NM_207312	exon4	c.965delA	p.D322fs	.	.	231.0	14.0	169.0	0.0	.	.	Atlas-Indel
ABCC5	10057	hgsc.bcm.edu	37	3	183699624	183699624	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	ABCC5	NM_005688	exon8	c.1039delT	p.C347fs	.	.	165.0	12.0	106.0	0.0	.	.	Atlas-Indel
CNOT11	55571	hgsc.bcm.edu	37	2	101885729	101885729	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	.	NM_017546	exon7	c.1386delC	p.N462fs	.	.	161.0	10.0	130.0	0.0	.	.	Atlas-Indel
IDH1	3417	hgsc.bcm.edu	37	2	209110110	209110110	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	IDH1	NM_005896	exon5	c.454delG	p.V152X	.	.	208.0	13.0	147.0	0.0	.	.	Atlas-Indel
C2orf71	388939	hgsc.bcm.edu	37	2	29294038	29294038	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	C2orf71	NM_001029883	exon1	c.3091delA	p.S1031fs	.	.	190.0	12.0	128.0	0.0	.	.	Atlas-Indel
SEC14L4	284904	hgsc.bcm.edu	37	22	30890192	30890192	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	SEC14L4	NM_001161368	exon7	c.526delA	p.S176fs	.	.	199.0	12.0	145.0	0.0	.	.	Atlas-Indel
SPATA4	132851	hgsc.bcm.edu	37	4	177114210	177114210	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	SPATA4	NM_144644	exon3	c.367delT	p.F123fs	.	.	180.0	13.0	167.0	0.0	.	.	Atlas-Indel
SYTL2	54843	hgsc.bcm.edu	37	11	85435856	85435856	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	SYTL2	NM_206927	exon1	c.1645delT	p.Y549fs	.	.	153.0	10.0	103.0	0.0	.	.	Atlas-Indel
OGT	8473	hgsc.bcm.edu	37	X	70783055	70783055	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	OGT	NM_181672	exon17	c.2223delC	p.L741fs	.	.	174.0	11.0	115.0	0.0	.	.	Atlas-Indel
HMGXB3	22993	hgsc.bcm.edu	37	5	149386090	149386090	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	HMGXB3	NM_014983	exon3	c.191delT	p.L64fs	.	.	123.0	11.0	101.0	0.0	.	.	Atlas-Indel
GK	2710	hgsc.bcm.edu	37	X	30719015	30719015	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	GK	NM_203391	exon11	c.843delC	p.A281fs	.	.	142.0	10.0	98.0	0.0	.	.	Atlas-Indel
OBSCN	84033	hgsc.bcm.edu	37	1	228564975	228564975	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	OBSCN	NM_001271223	exon112	c.26132delT	p.L8711fs	.	.	115.0	10.0	55.0	0.0	.	.	Atlas-Indel
NPAT	4863	hgsc.bcm.edu	37	11	108043363	108043363	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	NPAT	NM_002519	exon13	c.2349delT	p.N783fs	.	.	191.0	13.0	131.0	0.0	.	.	Atlas-Indel
APAF1	317	hgsc.bcm.edu	37	12	99119233	99119233	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	APAF1	NM_181861	exon25	c.3370delA	p.R1124fs	.	.	167.0	11.0	129.0	0.0	.	.	Atlas-Indel
ZAK	0	hgsc.bcm.edu	37	2	174130888	174130888	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	ZAK	NM_016653	exon20	c.1812delC	p.H604fs	.	.	233.0	14.0	202.0	0.0	.	.	Atlas-Indel
COL11A2	1302	hgsc.bcm.edu	37	6	33132109	33132109	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	COL11A2	NM_080680	exon65	c.5006delC	p.A1669fs	.	.	177.0	13.0	127.0	0.0	.	.	Atlas-Indel
TNFSF8	944	hgsc.bcm.edu	37	9	117666406	117666406	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	TNFSF8	NM_001244	exon4	c.511delC	p.Q171fs	.	.	255.0	16.0	255.0	0.0	.	.	Atlas-Indel
MAPT	4137	hgsc.bcm.edu	37	17	44060593	44060593	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	MAPT	NM_001123066	exon6	c.422delG	p.G141fs	.	.	163.0	10.0	169.0	0.0	.	.	Atlas-Indel
RCCD1	91433	hgsc.bcm.edu	37	15	91500927	91500927	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	RCCD1	NM_001017919	exon4	c.650delC	p.A217fs	.	.	174.0	16.0	136.0	0.0	.	.	Atlas-Indel
AKAP7	9465	hgsc.bcm.edu	37	6	131481221	131481221	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	AKAP7	NM_016377	exon3	c.173delA	p.N58fs	.	.	163.0	10.0	145.0	0.0	.	.	Atlas-Indel
CEP120	153241	hgsc.bcm.edu	37	5	122714083	122714083	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	CEP120	NM_153223	exon16	c.2144delC	p.T715fs	.	.	131.0	10.0	107.0	0.0	.	.	Atlas-Indel
DENND4A	10260	hgsc.bcm.edu	37	15	65983623	65983623	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	DENND4A	NM_001144823	exon23	c.3307delT	p.L1103fs	.	.	118.0	10.0	119.0	0.0	.	.	Atlas-Indel
TRIM41	90933	hgsc.bcm.edu	37	5	180661428	180661428	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	TRIM41	NM_033549	exon6	c.1545delT	p.P515fs	.	.	198.0	16.0	77.0	0.0	.	.	Atlas-Indel
SLC35A3	23443	hgsc.bcm.edu	37	1	100483342	100483342	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	SLC35A3	NM_001271685	exon7	c.983delA	p.Y328fs	.	.	186.0	12.0	194.0	0.0	.	.	Atlas-Indel
TSPO	706	hgsc.bcm.edu	37	22	43557161	43557161	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	TSPO	NM_001256531	exon3	c.285delG	p.W95fs	.	.	195.0	15.0	173.0	0.0	.	.	Atlas-Indel
FLOT1	10211	hgsc.bcm.edu	37	6	30698207	30698207	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	FLOT1	NM_005803	exon11	c.1088delA	p.Q363fs	.	.	210.0	14.0	122.0	0.0	.	.	Atlas-Indel
ANKMY1	51281	hgsc.bcm.edu	37	2	241465814	241465814	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	ANKMY1	NM_016552	exon5	c.736delA	p.K246fs	.	.	183.0	11.0	169.0	0.0	.	.	Atlas-Indel
KLHDC7B	113730	hgsc.bcm.edu	37	22	50988068	50988068	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	KLHDC7B	NM_138433	exon1	c.1472delT	p.L491fs	.	.	105.0	10.0	78.0	0.0	.	.	Atlas-Indel
PRB4	5545	hgsc.bcm.edu	37	12	11461606	11461606	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	PRB4	NM_001261399	exon3	c.312delA	p.P104fs	.	.	131.0	11.0	83.0	0.0	.	.	Atlas-Indel
GBP7	388646	hgsc.bcm.edu	37	1	89613446	89613446	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	GBP7	NM_207398	exon8	c.1170delG	p.K390fs	.	.	183.0	11.0	122.0	0.0	.	.	Atlas-Indel
TCF20	6942	hgsc.bcm.edu	37	22	42606575	42606575	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	TCF20	NM_181492	exon1	c.4738delC	p.Q1580fs	.	.	280.0	22.0	228.0	0.0	.	.	Atlas-Indel
GMCL1	64395	hgsc.bcm.edu	37	2	70076825	70076825	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	GMCL1	NM_178439	exon8	c.884delT	p.L295X	.	.	221.0	14.0	175.0	0.0	.	.	Atlas-Indel
HFM1	164045	hgsc.bcm.edu	37	1	91846518	91846518	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	HFM1	NM_001017975	exon7	c.825delC	p.F275fs	.	.	170.0	11.0	150.0	0.0	.	.	Atlas-Indel
KLHL5	51088	hgsc.bcm.edu	37	4	39064232	39064232	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	KLHL5	NM_015990	exon1	c.97delC	p.L33fs	.	.	260.0	16.0	203.0	0.0	.	.	Atlas-Indel
SRGAP1	57522	hgsc.bcm.edu	37	12	64536183	64536183	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	SRGAP1	NM_020762	exon22	c.2988delG	p.V996fs	.	.	136.0	10.0	112.0	0.0	.	.	Atlas-Indel
TRIM31	11074	hgsc.bcm.edu	37	6	30075888	30075888	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	TRIM31	NM_007028	exon6	c.826delC	p.L276fs	.	.	264.0	16.0	139.0	0.0	.	.	Atlas-Indel
EIF3M	10480	hgsc.bcm.edu	37	11	32610663	32610663	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	EIF3M	NM_006360	exon4	c.419delT	p.I140fs	.	.	108.0	10.0	95.0	0.0	.	.	Atlas-Indel
RAPGEF4	11069	hgsc.bcm.edu	37	2	173894920	173894920	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	RAPGEF4	NM_007023	exon26	c.2586delC	p.S862fs	.	.	123.0	10.0	130.0	0.0	.	.	Atlas-Indel
CD86	942	hgsc.bcm.edu	37	3	121838287	121838287	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	CD86	NM_175862	exon7	c.895delG	p.E299fs	.	.	177.0	11.0	166.0	0.0	.	.	Atlas-Indel
FANCI	55215	hgsc.bcm.edu	37	15	89837107	89837107	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	FANCI	NM_001113378	exon23	c.2334delC	p.Y778X	.	.	180.0	11.0	102.0	0.0	.	.	Atlas-Indel
FAM187B	148109	hgsc.bcm.edu	37	19	35715793	35715793	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	FAM187B	NM_152481	exon2	c.1046delC	p.A349fs	.	.	189.0	12.0	145.0	0.0	.	.	Atlas-Indel
ATG9A	79065	hgsc.bcm.edu	37	2	220088847	220088847	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	ATG9A	NM_001077198	exon8	c.1247delT	p.V416fs	.	.	171.0	11.0	138.0	0.0	.	.	Atlas-Indel
NAALAD2	10003	hgsc.bcm.edu	37	11	89914796	89914796	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	NAALAD2	NM_005467	exon17	c.1866delA	p.L622fs	.	.	147.0	10.0	141.0	0.0	.	.	Atlas-Indel
NUP153	9972	hgsc.bcm.edu	37	6	17665533	17665533	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	NUP153	NM_005124	exon9	c.1153delC	p.P385fs	.	.	163.0	10.0	108.0	0.0	.	.	Atlas-Indel
USP9Y	8287	hgsc.bcm.edu	37	Y	14837077	14837077	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	USP9Y	NM_004654	exon6	c.356delG	p.R119fs	.	.	154.0	11.0	120.0	0.0	.	.	Atlas-Indel
AIM1	202	hgsc.bcm.edu	37	6	106973032	106973032	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	AIM1	NM_001624	exon3	c.3045delT	p.N1015fs	.	.	199.0	12.0	168.0	0.0	.	.	Atlas-Indel
IKZF5	64376	hgsc.bcm.edu	37	10	124753859	124753859	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	IKZF5	NM_001271840	exon5	c.698delC	p.T233fs	.	.	246.0	17.0	208.0	0.0	.	.	Atlas-Indel
BBS2	583	hgsc.bcm.edu	37	16	56534909	56534909	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	BBS2	NM_031885	exon11	c.1255delG	p.A419fs	.	.	212.0	14.0	191.0	0.0	.	.	Atlas-Indel
SETD2	29072	hgsc.bcm.edu	37	3	47143007	47143007	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	SETD2	NM_014159	exon8	c.4957delA	p.T1653fs	.	.	160.0	10.0	126.0	0.0	.	.	Atlas-Indel
CNOT1	23019	hgsc.bcm.edu	37	16	58577533	58577533	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	CNOT1	NM_206999	exon31	c.4413delC	p.N1471fs	.	.	152.0	11.0	95.0	0.0	.	.	Atlas-Indel
SHANK3	85358	hgsc.bcm.edu	37	22	51160703	51160703	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	SHANK3	NM_033517	exon21	c.4399delC	p.R1467fs	.	.	214.0	13.0	177.0	0.0	.	.	Atlas-Indel
MAPK15	225689	hgsc.bcm.edu	37	8	144802914	144802914	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	MAPK15	NM_139021	exon9	c.820delT	p.S274fs	.	.	198.0	13.0	60.0	0.0	.	.	Atlas-Indel
DSG4	147409	hgsc.bcm.edu	37	18	28986275	28986275	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	DSG4	NM_001134453	exon12	c.1871delC	p.S624X	.	.	180.0	12.0	157.0	0.0	.	.	Atlas-Indel
HNRPDL	9987	hgsc.bcm.edu	37	4	83348625	83348625	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	HNRPDL	NM_031372	exon4	c.868delT	p.L290fs	.	.	125.0	11.0	135.0	0.0	.	.	Atlas-Indel
MYO1H	283446	hgsc.bcm.edu	37	12	109879445	109879445	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	.	NM_001101421	exon25	c.2515delG	p.E839fs	.	.	204.0	14.0	171.0	0.0	.	.	Atlas-Indel
GABRA4	2557	hgsc.bcm.edu	37	4	46979532	46979532	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	GABRA4	NM_000809	exon4	c.390delT	p.P130fs	.	.	192.0	12.0	182.0	0.0	.	.	Atlas-Indel
ZMAT1	84460	hgsc.bcm.edu	37	X	101138606	101138606	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	ZMAT1	NM_001011657	exon7	c.1794delG	p.K598fs	.	.	141.0	10.0	119.0	0.0	.	.	Atlas-Indel
SLC36A4	120103	hgsc.bcm.edu	37	11	92901154	92901154	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	SLC36A4	NM_152313	exon7	c.725delC	p.S242fs	.	.	185.0	12.0	114.0	0.0	.	.	Atlas-Indel
HLA-DOA	3111	hgsc.bcm.edu	37	6	32974621	32974621	+	Splice_Site	DEL	A	A	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	HLA-DOA	NM_002119	exon6	c.750-2T>-	.	.	.	152.0	10.0	99.0	0.0	.	.	Atlas-Indel
ARHGEF1	9138	hgsc.bcm.edu	37	19	42407036	42407036	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	ARHGEF1	NM_199002	exon18	c.1770delC	p.I590fs	.	.	108.0	10.0	99.0	0.0	.	.	Atlas-Indel
TAF2	6873	hgsc.bcm.edu	37	8	120774703	120774703	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	TAF2	NM_003184	exon19	c.2511delG	p.L837fs	.	.	184.0	12.0	96.0	0.0	.	.	Atlas-Indel
GPR155	151556	hgsc.bcm.edu	37	2	175326315	175326315	+	Splice_Site	DEL	C	C	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	GPR155	NM_001267051	exon8	c.1385+2G>-	.	.	.	178.0	13.0	135.0	0.0	.	.	Atlas-Indel
KCNT1	57582	hgsc.bcm.edu	37	9	138594208	138594208	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	KCNT1	NM_001272003	exon1	c.103delG	p.A35fs	.	.	185.0	13.0	147.0	0.0	.	.	Atlas-Indel
ZNF181	339318	hgsc.bcm.edu	37	19	35230499	35230499	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	ZNF181	NM_001029997	exon3	c.201delG	p.E67fs	.	.	169.0	12.0	131.0	0.0	.	.	Atlas-Indel
NSD1	64324	hgsc.bcm.edu	37	5	176638499	176638499	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	NSD1	NM_022455	exon5	c.3098delC	p.A1033fs	.	.	166.0	12.0	120.0	0.0	.	.	Atlas-Indel
ATP8B2	57198	hgsc.bcm.edu	37	1	154318344	154318344	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	ATP8B2	NM_020452	exon24	c.2861delT	p.M954fs	.	.	197.0	14.0	89.0	0.0	.	.	Atlas-Indel
ATG2A	23130	hgsc.bcm.edu	37	11	64665805	64665805	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	ATG2A	NM_015104	exon33	c.4702delA	p.T1568fs	.	.	141.0	11.0	101.0	0.0	.	.	Atlas-Indel
SRPR	6734	hgsc.bcm.edu	37	11	126136482	126136482	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	SRPR	NM_003139	exon6	c.730delG	p.A244fs	.	.	230.0	14.0	193.0	0.0	.	.	Atlas-Indel
SYNE1	23345	hgsc.bcm.edu	37	6	152553297	152553297	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	SYNE1	NM_182961	exon113	c.20817delT	p.N6939fs	.	.	180.0	13.0	183.0	0.0	.	.	Atlas-Indel
STAP1	26228	hgsc.bcm.edu	37	4	68472044	68472044	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	STAP1	NM_012108	exon9	c.856delG	p.E286fs	.	.	165.0	11.0	176.0	0.0	.	.	Atlas-Indel
LILRA2	11027	hgsc.bcm.edu	37	19	55098671	55098671	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	LILRA2	NM_001130917	exon8	c.1309delT	p.S437fs	.	.	205.0	13.0	198.0	0.0	.	.	Atlas-Indel
MICAL3	57553	hgsc.bcm.edu	37	22	18387542	18387542	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	MICAL3	NM_015241	exon3	c.329delC	p.A110fs	.	.	164.0	12.0	156.0	0.0	.	.	Atlas-Indel
CDKL2	8999	hgsc.bcm.edu	37	4	76551036	76551036	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	CDKL2	NM_003948	exon2	c.138delG	p.K46fs	.	.	127.0	11.0	103.0	0.0	.	.	Atlas-Indel
RXRB	6257	hgsc.bcm.edu	37	6	33164342	33164342	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	RXRB	NM_021976	exon5	c.863delA	p.D288fs	.	.	152.0	10.0	86.0	0.0	.	.	Atlas-Indel
CSF1	1435	hgsc.bcm.edu	37	1	110466713	110466713	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	CSF1	NM_000757	exon6	c.1469delG	p.S490fs	.	.	177.0	11.0	135.0	0.0	.	.	Atlas-Indel
CS	1431	hgsc.bcm.edu	37	12	56676682	56676682	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	CS	NM_004077	exon5	c.362delG	p.W121fs	.	.	134.0	10.0	103.0	0.0	.	.	Atlas-Indel
LYPD3	27076	hgsc.bcm.edu	37	19	43968611	43968611	+	Splice_Site	DEL	G	G	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	LYPD3	NM_014400	exon3	c.80-2C>-	.	.	.	183.0	11.0	104.0	0.0	.	.	Atlas-Indel
KDM4C	23081	hgsc.bcm.edu	37	9	7169999	7169999	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	KDM4C	NM_001146694	exon21	c.3102delT	p.S1034fs	.	.	134.0	11.0	100.0	0.0	.	.	Atlas-Indel
MFN1	55669	hgsc.bcm.edu	37	3	179082955	179082955	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	MFN1	NM_033540	exon7	c.694delA	p.I232fs	.	.	155.0	11.0	153.0	0.0	.	.	Atlas-Indel
NEK5	341676	hgsc.bcm.edu	37	13	52650224	52650224	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	NEK5	NM_199289	exon19	c.1704delT	p.N568fs	.	.	131.0	10.0	96.0	0.0	.	.	Atlas-Indel
RALY	22913	hgsc.bcm.edu	37	20	32664985	32664985	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	RALY	NM_016732	exon8	c.809delA	p.Q270fs	.	.	197.0	12.0	157.0	0.0	.	.	Atlas-Indel
SORBS2	8470	hgsc.bcm.edu	37	4	186570678	186570678	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	SORBS2	NM_001145673	exon10	c.1050delA	p.P350fs	.	.	192.0	12.0	230.0	0.0	.	.	Atlas-Indel
FAM71B	153745	hgsc.bcm.edu	37	5	156592606	156592606	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	FAM71B	NM_130899	exon1	c.575delA	p.D192fs	.	.	265.0	17.0	208.0	0.0	.	.	Atlas-Indel
OR14J1	442191	hgsc.bcm.edu	37	6	29274914	29274914	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	OR14J1	NM_030946	exon1	c.447delT	p.A149fs	.	.	252.0	16.0	116.0	0.0	.	.	Atlas-Indel
DNAH10	196385	hgsc.bcm.edu	37	12	124289391	124289391	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	DNAH10	NM_207437	exon17	c.2436delA	p.E812fs	.	.	159.0	10.0	148.0	0.0	.	.	Atlas-Indel
RB1CC1	9821	hgsc.bcm.edu	37	8	53569774	53569774	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	RB1CC1	NM_001083617	exon15	c.2616delT	p.N872fs	.	.	159.0	10.0	54.0	0.0	.	.	Atlas-Indel
CCDC14	64770	hgsc.bcm.edu	37	3	123675247	123675247	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	CCDC14	NM_022757	exon3	c.259delA	p.N87fs	.	.	189.0	12.0	96.0	0.0	.	.	Atlas-Indel
SPATA31A1	647060	hgsc.bcm.edu	37	9	39358166	39358166	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	.	NM_001085452	exon4	c.403delT	p.S135fs	.	.	157.0	10.0	134.0	0.0	.	.	Atlas-Indel
HGD	3081	hgsc.bcm.edu	37	3	120352071	120352071	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	HGD	NM_000187	exon13	c.1112delA	p.H371fs	.	.	182.0	15.0	119.0	0.0	.	.	Atlas-Indel
STXBP5L	9515	hgsc.bcm.edu	37	3	121001118	121001118	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	STXBP5L	NM_014980	exon20	c.2115delC	p.N705fs	.	.	138.0	11.0	103.0	0.0	.	.	Atlas-Indel
SHROOM1	134549	hgsc.bcm.edu	37	5	132159877	132159877	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	SHROOM1	NM_133456	exon4	c.1477delA	p.T493fs	.	.	294.0	18.0	269.0	0.0	.	.	Atlas-Indel
FANCI	55215	hgsc.bcm.edu	37	15	89803947	89803947	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	FANCI	NM_001113378	exon4	c.160delT	p.S54fs	.	.	149.0	10.0	93.0	0.0	.	.	Atlas-Indel
ZCCHC9	84240	hgsc.bcm.edu	37	5	80608454	80608454	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	ZCCHC9	NM_001131036	exon6	c.788delC	p.T263fs	.	.	165.0	10.0	122.0	0.0	.	.	Atlas-Indel
KALRN	8997	hgsc.bcm.edu	37	3	124210257	124210257	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	KALRN	NM_003947	exon31	c.4668delT	p.N1556fs	.	.	103.0	10.0	74.0	0.0	.	.	Atlas-Indel
ADH1B	125	hgsc.bcm.edu	37	4	100231959	100231959	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	ADH1B	NM_000668	exon8	c.1067delT	p.I356fs	.	.	202.0	14.0	166.0	0.0	.	.	Atlas-Indel
FPGT-TNNI3K	100526835	hgsc.bcm.edu	37	1	74930379	74930379	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	.	NM_001199327	exon24	c.2484delG	p.K828fs	.	.	144.0	10.0	127.0	0.0	.	.	Atlas-Indel
CCDC60	160777	hgsc.bcm.edu	37	12	119968734	119968734	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	CCDC60	NM_178499	exon13	c.1416delC	p.A472fs	.	.	162.0	10.0	148.0	0.0	.	.	Atlas-Indel
OIT3	170392	hgsc.bcm.edu	37	10	74673122	74673122	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	OIT3	NM_152635	exon6	c.846delT	p.V282fs	.	.	157.0	11.0	114.0	0.0	.	.	Atlas-Indel
SLC17A9	63910	hgsc.bcm.edu	37	20	61588797	61588797	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	SLC17A9	NM_022082	exon3	c.261delT	p.I87fs	.	.	153.0	10.0	113.0	0.0	.	.	Atlas-Indel
HTT	3064	hgsc.bcm.edu	37	4	3129309	3129309	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	HTT	NM_002111	exon12	c.1720delA	p.T574fs	.	.	253.0	17.0	225.0	0.0	.	.	Atlas-Indel
IQGAP1	8826	hgsc.bcm.edu	37	15	91009653	91009653	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	IQGAP1	NM_003870	exon17	c.2019delG	p.K673fs	.	.	144.0	11.0	95.0	0.0	.	.	Atlas-Indel
SWT1	54823	hgsc.bcm.edu	37	1	185135718	185135718	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	SWT1	NM_017673	exon3	c.98delG	p.R33fs	.	.	180.0	11.0	123.0	0.0	.	.	Atlas-Indel
COL12A1	1303	hgsc.bcm.edu	37	6	75818818	75818818	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	COL12A1	NM_004370	exon52	c.8017delG	p.D2673fs	.	.	173.0	11.0	175.0	0.0	.	.	Atlas-Indel
PLOD2	5352	hgsc.bcm.edu	37	3	145794581	145794581	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	PLOD2	NM_182943	exon15	c.1666delG	p.E556fs	.	.	161.0	12.0	126.0	0.0	.	.	Atlas-Indel
DNAH6	1768	hgsc.bcm.edu	37	2	84861633	84861633	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	DNAH6	NM_001370	exon30	c.4520delT	p.M1507fs	.	.	144.0	10.0	101.0	0.0	.	.	Atlas-Indel
DMXL2	23312	hgsc.bcm.edu	37	15	51914662	51914662	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	DMXL2	NM_001174117	exon1	c.82delT	p.F28fs	.	.	156.0	10.0	128.0	0.0	.	.	Atlas-Indel
GHRHR	2692	hgsc.bcm.edu	37	7	31015405	31015405	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	GHRHR	NM_000823	exon10	c.895delC	p.L299fs	.	.	183.0	12.0	129.0	0.0	.	.	Atlas-Indel
KATNAL1	84056	hgsc.bcm.edu	37	13	30815176	30815176	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	KATNAL1	NM_001014380	exon5	c.541delT	p.F181fs	.	.	146.0	10.0	70.0	0.0	.	.	Atlas-Indel
ACADL	33	hgsc.bcm.edu	37	2	211082784	211082784	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	ACADL	NM_001608	exon3	c.277delG	p.A93fs	.	.	187.0	15.0	135.0	0.0	.	.	Atlas-Indel
DSCAM	1826	hgsc.bcm.edu	37	21	41452224	41452224	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	DSCAM	NM_001271534	exon25	c.4276delA	p.S1426fs	.	.	179.0	11.0	180.0	0.0	.	.	Atlas-Indel
CAB39L	81617	hgsc.bcm.edu	37	13	49957037	49957037	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	CAB39L	NM_030925	exon2	c.11delT	p.M4fs	.	.	141.0	10.0	102.0	0.0	.	.	Atlas-Indel
DDX52	11056	hgsc.bcm.edu	37	17	36002258	36002258	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	DDX52	NM_007010	exon2	c.168delA	p.P56fs	.	.	181.0	11.0	185.0	0.0	.	.	Atlas-Indel
PC	5091	hgsc.bcm.edu	37	11	66638785	66638785	+	Splice_Site	DEL	C	C	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	PC	NM_001040716	exon7	c.487+2G>-	.	.	.	154.0	10.0	107.0	0.0	.	.	Atlas-Indel
RBM12B	389677	hgsc.bcm.edu	37	8	94746698	94746698	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	RBM12B	NM_203390	exon3	c.1942delG	p.E648fs	.	.	159.0	10.0	75.0	0.0	.	.	Atlas-Indel
ADAMTSL4	54507	hgsc.bcm.edu	37	1	150532255	150532255	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	ADAMTSL4	NM_019032	exon18	c.2961delA	p.Q987fs	.	.	165.0	10.0	72.0	0.0	.	.	Atlas-Indel
ZBED1	9189	hgsc.bcm.edu	37	X	2408092	2408092	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	ZBED1	NM_001171135	exon2	c.670delA	p.N224fs	.	.	161.0	10.0	119.0	0.0	.	.	Atlas-Indel
EP400	57634	hgsc.bcm.edu	37	12	132502833	132502833	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	EP400	NM_015409	exon21	c.4188delG	p.K1396fs	.	.	159.0	11.0	148.0	0.0	.	.	Atlas-Indel
CEBPZ	10153	hgsc.bcm.edu	37	2	37449611	37449611	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	CEBPZ	NM_005760	exon4	c.1978delC	p.L660fs	.	.	188.0	12.0	150.0	0.0	.	.	Atlas-Indel
ARHGAP22	58504	hgsc.bcm.edu	37	10	49661399	49661399	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	ARHGAP22	NM_001256024	exon8	c.985delG	p.G329fs	.	.	193.0	12.0	169.0	0.0	.	.	Atlas-Indel
PPIL2	23759	hgsc.bcm.edu	37	22	22043036	22043036	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	PPIL2	NM_014337	exon15	c.1036delT	p.W346fs	.	.	183.0	11.0	125.0	0.0	.	.	Atlas-Indel
CPNE7	27132	hgsc.bcm.edu	37	16	89649911	89649911	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	CPNE7	NM_014427	exon4	c.556delA	p.R186fs	.	.	146.0	10.0	136.0	0.0	.	.	Atlas-Indel
TUBGCP6	85378	hgsc.bcm.edu	37	22	50659190	50659190	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	TUBGCP6	NM_020461	exon16	c.3599delA	p.E1200fs	.	.	157.0	11.0	126.0	0.0	.	.	Atlas-Indel
PPFIBP1	8496	hgsc.bcm.edu	37	12	27817373	27817373	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	PPFIBP1	NM_003622	exon12	c.984delT	p.G328fs	.	.	131.0	10.0	136.0	0.0	.	.	Atlas-Indel
RABGEF1	27342	hgsc.bcm.edu	37	7	66270287	66270287	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	RABGEF1	NM_014504	exon8	c.980delA	p.N327fs	.	.	162.0	10.0	115.0	0.0	.	.	Atlas-Indel
FAM186A	121006	hgsc.bcm.edu	37	12	50748485	50748485	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	FAM186A	NM_001145475	exon4	c.2131delT	p.L711X	.	.	147.0	10.0	114.0	0.0	.	.	Atlas-Indel
OR5M3	219482	hgsc.bcm.edu	37	11	56237709	56237709	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	OR5M3	NM_001004742	exon1	c.266delC	p.T89fs	.	.	148.0	10.0	113.0	0.0	.	.	Atlas-Indel
IFT52	51098	hgsc.bcm.edu	37	20	42249541	42249541	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	IFT52	NM_016004	exon9	c.743delA	p.N248fs	.	.	169.0	11.0	160.0	0.0	.	.	Atlas-Indel
HIAT1	64645	hgsc.bcm.edu	37	1	100525518	100525518	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	HIAT1	NM_033055	exon4	c.327delG	p.V109fs	.	.	194.0	12.0	177.0	0.0	.	.	Atlas-Indel
SYCP1	6847	hgsc.bcm.edu	37	1	115487538	115487538	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	SYCP1	NM_003176	exon25	c.2088delG	p.Q696fs	.	.	153.0	10.0	122.0	0.0	.	.	Atlas-Indel
PITRM1	10531	hgsc.bcm.edu	37	10	3207693	3207693	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	PITRM1	NM_014889	exon5	c.446delC	p.S149fs	.	.	147.0	10.0	106.0	0.0	.	.	Atlas-Indel
ZNF804A	91752	hgsc.bcm.edu	37	2	185800708	185800708	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	ZNF804A	NM_194250	exon4	c.584delC	p.A195fs	.	.	134.0	10.0	115.0	0.0	.	.	Atlas-Indel
DES	1674	hgsc.bcm.edu	37	2	220286238	220286238	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	DES	NM_001927	exon6	c.1199delT	p.V400fs	.	.	106.0	10.0	91.0	0.0	.	.	Atlas-Indel
PSRC1	84722	hgsc.bcm.edu	37	1	109823600	109823600	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	PSRC1	NM_001032291	exon6	c.704delG	p.R235fs	.	.	163.0	10.0	132.0	0.0	.	.	Atlas-Indel
CRTAM	56253	hgsc.bcm.edu	37	11	122722405	122722405	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	CRTAM	NM_019604	exon3	c.197delT	p.L66X	.	.	186.0	15.0	137.0	0.0	.	.	Atlas-Indel
LRRC34	151827	hgsc.bcm.edu	37	3	169514647	169514647	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	LRRC34	NM_001172779	exon8	c.795delT	p.N265fs	.	.	212.0	13.0	152.0	0.0	.	.	Atlas-Indel
KIFC2	90990	hgsc.bcm.edu	37	8	145693776	145693776	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	KIFC2	NM_145754	exon8	c.874delG	p.A292fs	.	.	163.0	10.0	99.0	0.0	.	.	Atlas-Indel
PPYR1	5540	hgsc.bcm.edu	37	10	47087668	47087668	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	PPYR1	NM_005972	exon3	c.884delT	p.I295fs	.	.	152.0	11.0	155.0	0.0	.	.	Atlas-Indel
FIP1L1	81608	hgsc.bcm.edu	37	4	54265950	54265950	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	FIP1L1	NM_030917	exon10	c.758delC	p.T253fs	.	.	138.0	11.0	116.0	0.0	.	.	Atlas-Indel
TLE2	7089	hgsc.bcm.edu	37	19	3013796	3013796	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	.	NM_001144761	exon12	c.787delA	p.S263fs	.	.	160.0	10.0	133.0	0.0	.	.	Atlas-Indel
PYGO2	90780	hgsc.bcm.edu	37	1	154931663	154931663	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	PYGO2	NM_138300	exon3	c.814delC	p.P272fs	.	.	205.0	14.0	95.0	0.0	.	.	Atlas-Indel
PCBD2	84105	hgsc.bcm.edu	37	5	134296318	134296318	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	PCBD2	NM_032151	exon4	c.339delC	p.T113fs	.	.	198.0	15.0	166.0	0.0	.	.	Atlas-Indel
CLCA2	9635	hgsc.bcm.edu	37	1	86916286	86916286	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	CLCA2	NM_006536	exon12	c.2024delA	p.Y675fs	.	.	128.0	11.0	78.0	0.0	.	.	Atlas-Indel
ZNF629	23361	hgsc.bcm.edu	37	16	30795213	30795213	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	.	NM_001080417	exon3	c.437delC	p.A146fs	.	.	139.0	10.0	28.0	0.0	.	.	Atlas-Indel
TMEM63A	9725	hgsc.bcm.edu	37	1	226055702	226055702	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	TMEM63A	NM_014698	exon7	c.401delA	p.E134fs	.	.	178.0	11.0	73.0	0.0	.	.	Atlas-Indel
UNC13C	440279	hgsc.bcm.edu	37	15	54860046	54860046	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	UNC13C	NM_001080534	exon28	c.6006delG	p.E2002fs	.	.	160.0	10.0	137.0	0.0	.	.	Atlas-Indel
MERTK	10461	hgsc.bcm.edu	37	2	112754915	112754915	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	MERTK	NM_006343	exon10	c.1465delG	p.A489fs	.	.	172.0	11.0	117.0	0.0	.	.	Atlas-Indel
FUS	2521	hgsc.bcm.edu	37	16	31202283	31202283	+	Splice_Site	DEL	G	G	-	rs35711706		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	FUS	NM_001170937	exon14	c.1382-2G>-	.	.	.	134.0	10.0	110.0	0.0	.	.	Atlas-Indel
ARCN1	372	hgsc.bcm.edu	37	11	118454608	118454608	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	ARCN1	NM_001655	exon4	c.531delC	p.G177fs	.	.	221.0	15.0	189.0	0.0	.	.	Atlas-Indel
RBM24	221662	hgsc.bcm.edu	37	6	17281858	17281858	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	RBM24	NM_001143942	exon1	c.45delC	p.V15fs	.	.	282.0	19.0	167.0	0.0	.	.	Atlas-Indel
DCTN2	10540	hgsc.bcm.edu	37	12	57926541	57926541	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	DCTN2	NM_001261412	exon10	c.834delG	p.L278fs	.	.	155.0	16.0	141.0	0.0	.	.	Atlas-Indel
PRDM15	63977	hgsc.bcm.edu	37	21	43256618	43256618	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	PRDM15	NM_022115	exon16	c.2241delC	p.F747fs	.	.	204.0	14.0	179.0	0.0	.	.	Atlas-Indel
BCL9	607	hgsc.bcm.edu	37	1	147084890	147084890	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	BCL9	NM_004326	exon5	c.261delT	p.N87fs	.	.	244.0	16.0	108.0	0.0	.	.	Atlas-Indel
MMP27	64066	hgsc.bcm.edu	37	11	102564704	102564704	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	MMP27	NM_022122	exon8	c.1127delT	p.I376fs	.	.	164.0	10.0	152.0	0.0	.	.	Atlas-Indel
SCN9A	6335	hgsc.bcm.edu	37	2	167094772	167094772	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	SCN9A	NM_002977	exon20	c.3601delG	p.E1201fs	.	.	234.0	17.0	213.0	0.0	.	.	Atlas-Indel
FREM2	341640	hgsc.bcm.edu	37	13	39265691	39265691	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	FREM2	NM_207361	exon1	c.4209delT	p.N1403fs	.	.	157.0	10.0	89.0	0.0	.	.	Atlas-Indel
CACNA2D1	781	hgsc.bcm.edu	37	7	81624216	81624216	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	CACNA2D1	NM_000722	exon20	c.1703delC	p.T568fs	.	.	240.0	16.0	216.0	0.0	.	.	Atlas-Indel
SECISBP2	79048	hgsc.bcm.edu	37	9	91943618	91943618	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	SECISBP2	NM_024077	exon5	c.617delC	p.A206fs	.	.	186.0	12.0	165.0	0.0	.	.	Atlas-Indel
WDR45B	56270	hgsc.bcm.edu	37	17	80575188	80575188	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	.	NM_019613	exon8	c.791delG	p.R264fs	.	.	148.0	11.0	150.0	0.0	.	.	Atlas-Indel
ZSWIM2	151112	hgsc.bcm.edu	37	2	187713741	187713741	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	ZSWIM2	NM_182521	exon1	c.118delA	p.T40fs	.	.	244.0	16.0	193.0	0.0	.	.	Atlas-Indel
COX5B	1329	hgsc.bcm.edu	37	2	98264520	98264520	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	COX5B	NM_001862	exon4	c.338delG	p.C113fs	.	.	215.0	13.0	183.0	0.0	.	.	Atlas-Indel
NRBP2	340371	hgsc.bcm.edu	37	8	144919257	144919257	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	NRBP2	NM_178564	exon14	c.1218delG	p.K406fs	.	.	231.0	14.0	146.0	0.0	.	.	Atlas-Indel
CUL9	23113	hgsc.bcm.edu	37	6	43172517	43172517	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	CUL9	NM_015089	exon22	c.4370delG	p.S1457fs	.	.	172.0	11.0	99.0	0.0	.	.	Atlas-Indel
IFNAR1	3454	hgsc.bcm.edu	37	21	34707933	34707933	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	IFNAR1	NM_000629	exon2	c.179delC	p.T60fs	.	.	116.0	11.0	99.0	0.0	.	.	Atlas-Indel
FN1	2335	hgsc.bcm.edu	37	2	216230250	216230250	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	FN1	NM_212482	exon43	c.7123delG	p.G2375fs	.	.	151.0	11.0	163.0	0.0	.	.	Atlas-Indel
CRIPT	9419	hgsc.bcm.edu	37	2	46851000	46851000	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	CRIPT	NM_014171	exon4	c.234delC	p.Y78X	.	.	156.0	10.0	108.0	0.0	.	.	Atlas-Indel
NDUFAF6	137682	hgsc.bcm.edu	37	8	96060727	96060727	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	.	NM_152416	exon7	c.756delT	p.D252fs	.	.	178.0	11.0	69.0	0.0	.	.	Atlas-Indel
COG2	22796	hgsc.bcm.edu	37	1	230800279	230800279	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	COG2	NM_007357	exon5	c.430delG	p.E144fs	.	.	178.0	11.0	86.0	0.0	.	.	Atlas-Indel
SIN3A	25942	hgsc.bcm.edu	37	15	75693144	75693144	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	SIN3A	NM_001145358	exon11	c.1665delC	p.G555fs	.	.	142.0	10.0	116.0	0.0	.	.	Atlas-Indel
ATP2C2	9914	hgsc.bcm.edu	37	16	84456800	84456800	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	ATP2C2	NM_014861	exon10	c.849delT	p.P283fs	.	.	162.0	10.0	172.0	0.0	.	.	Atlas-Indel
NFE2	4778	hgsc.bcm.edu	37	12	54686722	54686722	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	NFE2	NM_001261461	exon4	c.559delA	p.N187fs	.	.	155.0	11.0	141.0	0.0	.	.	Atlas-Indel
DIEXF	27042	hgsc.bcm.edu	37	1	210010321	210010321	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	DIEXF	NM_014388	exon6	c.826delA	p.T276fs	.	.	162.0	11.0	110.0	0.0	.	.	Atlas-Indel
NOM1	64434	hgsc.bcm.edu	37	7	156754952	156754952	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	NOM1	NM_138400	exon5	c.1739delC	p.A580fs	.	.	228.0	14.0	174.0	0.0	.	.	Atlas-Indel
BSN	8927	hgsc.bcm.edu	37	3	49692373	49692373	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	BSN	NM_003458	exon5	c.5383delA	p.R1795fs	.	.	164.0	10.0	143.0	0.0	.	.	Atlas-Indel
ARNT2	9915	hgsc.bcm.edu	37	15	80867380	80867380	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	ARNT2	NM_014862	exon14	c.1441delG	p.E481fs	.	.	165.0	10.0	124.0	0.0	.	.	Atlas-Indel
DGKZ	8525	hgsc.bcm.edu	37	11	46396358	46396358	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	DGKZ	NM_001105540	exon19	c.2130delA	p.K710fs	.	.	161.0	10.0	96.0	0.0	.	.	Atlas-Indel
TNRC18	84629	hgsc.bcm.edu	37	7	5353050	5353050	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	TNRC18	NM_001080495	exon27	c.7473delC	p.G2491fs	.	.	167.0	11.0	91.0	0.0	.	.	Atlas-Indel
ATG2A	23130	hgsc.bcm.edu	37	11	64664282	64664282	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	ATG2A	NM_015104	exon38	c.G5210T	p.R1737L	TTCTTGCGGATGT	.	143.0	27.0	109.0	0.0	.	.	Atlas-SNP
OVGP1	5016	hgsc.bcm.edu	37	1	111957947	111957947	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	OVGP1	NM_002557	exon11	c.A1176G	p.L392L	TTGTGGTAAAGAA	.	95.0	29.0	84.0	0.0	.	.	Atlas-SNP
FER1L6	654463	hgsc.bcm.edu	37	8	125103757	125103757	+	Silent	SNP	C	C	T	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	FER1L6	NM_001039112	exon34	c.C4485T	p.H1495H	CTTTCACCCTGGG	.	206.0	123.0	99.0	0.0	.	.	Atlas-SNP
RANBP2	5903	hgsc.bcm.edu	37	2	109379816	109379816	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	RANBP2	NM_006267	exon20	c.C2821A	p.P941T	TATGGTCCTCCTG	.	247.0	11.0	174.0	0.0	.	.	Atlas-SNP
KRTAP10-2	386679	hgsc.bcm.edu	37	21	45970771	45970771	+	Missense_Mutation	SNP	C	C	T	rs200215960	byfrequency	TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	KRTAP10-2	NM_198693	exon1	c.G571A	p.V191I	AGCAGACAGGCTT	.	100.0	11.0	81.0	0.0	C|0.956;T|0.044	.	Atlas-SNP
CYFIP2	26999	hgsc.bcm.edu	37	5	156721858	156721858	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	CYFIP2	NM_001037332	exon4	c.G274C	p.A92P	TCCCGGGCCATTC	.	259.0	11.0	213.0	0.0	.	.	Atlas-SNP
FAM157A	728262	hgsc.bcm.edu	37	3	197880164	197880164	+	Silent	SNP	G	G	A	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	.	NM_001145248	exon2	c.G243A	p.Q81Q	GCAGCAGCAGCAG	.	286.0	33.0	283.0	0.0	.	.	Atlas-SNP
CLTCL1	8218	hgsc.bcm.edu	37	22	19189005	19189005	+	Splice_Site	SNP	T	T	C	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	CLTCL1	NM_001835	exon24	c.3602-2A>G	.	TCCAACTACGGAT	.	92.0	10.0	80.0	0.0	.	.	Atlas-SNP
PCBP3	54039	hgsc.bcm.edu	37	21	47320946	47320946	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	PCBP3	NM_001130141	exon5	c.C258A	p.C86X	AAACTGCCCAGAG	.	89.0	12.0	93.0	0.0	.	.	Atlas-SNP
MSH2	4436	hgsc.bcm.edu	37	2	47639551	47639551	+	Splice_Site	SNP	A	A	T	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	MSH2	NM_000251	exon4	c.646-2A>T	.	CAAAATAGATAAT	.	293.0	83.0	211.0	0.0	.	.	Atlas-SNP
HTT	3064	hgsc.bcm.edu	37	4	3241656	3241656	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	HTT	NM_002111	exon67	c.G9299A	p.R3100K	TCTACAGACACCA	.	176.0	28.0	139.0	0.0	.	.	Atlas-SNP
RP1L1	94137	hgsc.bcm.edu	37	8	10466010	10466010	+	Missense_Mutation	SNP	C	C	A	rs181718385	byfrequency	TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	RP1L1	NM_178857	exon4	c.G5598T	p.E1866D	CTGGGCCTCCCCT	.	73.0	23.0	46.0	0.0	C|0.991;A|0.008	.	Atlas-SNP
GHITM	27069	hgsc.bcm.edu	37	10	85904722	85904722	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	GHITM	NM_014394	exon5	c.A433C	p.I145L	ATAGCAATCAGCA	.	182.0	67.0	175.0	0.0	.	.	Atlas-SNP
MICA	100507436	hgsc.bcm.edu	37	6	31380100	31380100	+	Splice_Site	SNP	A	A	C	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	.	NM_001177519	exon5	c.893-2A>C	.	TTTTTCAGGGAAA	.	219.0	13.0	138.0	0.0	.	.	Atlas-SNP
TCEAL6	158931	hgsc.bcm.edu	37	X	101395778	101395778	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	TCEAL6	NM_001006938	exon3	c.G526A	p.G176R	TGTCCCCTTGGGC	.	138.0	18.0	65.0	0.0	.	.	Atlas-SNP
SALL3	27164	hgsc.bcm.edu	37	18	76752544	76752544	+	Missense_Mutation	SNP	G	G	T	rs186555722		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	SALL3	NM_171999	exon2	c.G553T	p.A185S	CAGGGCGCGCGCG	.	8.0	7.0	0.0	0.0	G|0.967;T|0.033	.	Atlas-SNP
GALR1	2587	hgsc.bcm.edu	37	18	74962810	74962810	+	Silent	SNP	G	G	A	rs5375	bycluster;byfrequency;by1000genomes;alternate_allele	TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	GALR1	NM_001480	exon1	c.G306A	p.V102V	CTGGGTGCTGGGC	.	181.0	59.0	127.0	0.0	G|0.936;T|0.064	.	Atlas-SNP
WDR49	151790	hgsc.bcm.edu	37	3	167254660	167254660	+	Missense_Mutation	SNP	G	G	A	rs200695837		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	WDR49	NM_178824	exon7	c.C896T	p.T299M	TTACCCGTAACAA	.	75.0	19.0	81.0	0.0	G|0.999;A|0.001	.	Atlas-SNP
HAVCR1	26762	hgsc.bcm.edu	37	5	156479571	156479571	+	Missense_Mutation	SNP	C	C	T	rs183130208		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	HAVCR1	NM_001099414	exon4	c.G474A	p.M158I	AGTCGTCATTGGA	.	400.0	39.0	333.0	0.0	.	.	Atlas-SNP
RANBP2	5903	hgsc.bcm.edu	37	2	109379840	109379840	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	RANBP2	NM_006267	exon20	c.C2845G	p.P949A	GAGTCTCCTGCAA	.	223.0	10.0	140.0	0.0	.	.	Atlas-SNP
HYOU1	10525	hgsc.bcm.edu	37	11	118926262	118926262	+	Silent	SNP	C	C	T	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	HYOU1	NM_006389	exon4	c.G207A	p.P69P	GATCACCGGTGTT	.	152.0	20.0	107.0	0.0	.	.	Atlas-SNP
CD207	50489	hgsc.bcm.edu	37	2	71062833	71062833	+	Splice_Site	SNP	G	G	C	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	CD207	NM_015717	exon2	c.73+1C>G	.	TGGCTTGCTCGGG	.	250.0	20.0	216.0	0.0	.	.	Atlas-SNP
SMARCC2	6601	hgsc.bcm.edu	37	12	56565643	56565643	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	SMARCC2	NM_139067	exon21	c.C2005G	p.H669D	GAAAATGCAAGAT	.	106.0	21.0	93.0	0.0	.	.	Atlas-SNP
ALPK1	80216	hgsc.bcm.edu	37	4	113356354	113356354	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	ALPK1	NM_001102406	exon12	c.G3085A	p.E1029K	GCCCAGGAAACTA	.	120.0	20.0	130.0	0.0	.	.	Atlas-SNP
OR11G2	390439	hgsc.bcm.edu	37	14	20666182	20666182	+	Missense_Mutation	SNP	G	G	A	rs77471263		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	OR11G2	NM_001005503	exon1	c.G688A	p.G230S	AAAAAAGGCCCTG	.	185.0	15.0	127.0	0.0	.	.	Atlas-SNP
DNAJC22	79962	hgsc.bcm.edu	37	12	49743118	49743118	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	DNAJC22	NM_024902	exon2	c.A463G	p.I155V	CTGCCCATTAGCG	.	86.0	18.0	54.0	0.0	.	.	Atlas-SNP
CYFIP2	26999	hgsc.bcm.edu	37	5	156721868	156721868	+	Splice_Site	SNP	G	G	A	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	CYFIP2	NM_001037333	exon4	c.282+2G>A	.	TTCCCAGGTGAGA	.	249.0	14.0	213.0	0.0	.	.	Atlas-SNP
SSPO	23145	hgsc.bcm.edu	37	7	149476672	149476672	+	Silent	SNP	G	G	T	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	.	NM_198455	exon10	c.G1122T	p.L374L	GCCCCTGGGGCTC	.	208.0	19.0	213.0	0.0	.	.	Atlas-SNP
FAM157B	100132403	hgsc.bcm.edu	37	9	141107561	141107561	+	Silent	SNP	G	G	A	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	.	NM_001145249	exon2	c.G243A	p.Q81Q	GCAGCAGCAGCAG	.	236.0	27.0	223.0	0.0	.	.	Atlas-SNP
ELOVL7	79993	hgsc.bcm.edu	37	5	60050627	60050627	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	ELOVL7	NM_001104558	exon8	c.C670T	p.Q224X	AGAACTGGCTTAT	.	111.0	33.0	82.0	0.0	.	.	Atlas-SNP
CD207	50489	hgsc.bcm.edu	37	2	71062836	71062836	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	CD207	NM_015717	exon1	c.G71A	p.R24Q	CTTGCTCGGGGCC	.	253.0	21.0	218.0	0.0	.	.	Atlas-SNP
TMEM62	80021	hgsc.bcm.edu	37	15	43446967	43446967	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	TMEM62	NM_024956	exon9	c.G1120C	p.V374L	ATTTTCGTACTGA	.	152.0	15.0	101.0	0.0	.	.	Atlas-SNP
CIB3	117286	hgsc.bcm.edu	37	19	16275656	16275656	+	Missense_Mutation	SNP	C	C	T	rs200526470		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	CIB3	NM_054113	exon5	c.G415A	p.G139R	TCAGCCCCCCCCG	.	171.0	13.0	159.0	0.0	.	.	Atlas-SNP
WNT3A	89780	hgsc.bcm.edu	37	1	228238561	228238561	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	WNT3A	NM_033131	exon3	c.G518A	p.R173Q	ACGCCCGGGAGAA	.	237.0	47.0	123.0	0.0	.	.	Atlas-SNP
CYFIP2	26999	hgsc.bcm.edu	37	5	156721863	156721863	+	Silent	SNP	T	T	C	rs200051515		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	CYFIP2	NM_001037332	exon4	c.T279C	p.I93I	GGCCATTCCCAGG	.	251.0	27.0	208.0	0.0	.	.	Atlas-SNP
AHDC1	27245	hgsc.bcm.edu	37	1	27876868	27876868	+	Silent	SNP	G	G	T	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	AHDC1	NM_001029882	exon6	c.C1759A	p.R587R	GCCGTCGTTTTTT	.	257.0	33.0	236.0	0.0	.	.	Atlas-SNP
PCDHB2	56133	hgsc.bcm.edu	37	5	140475647	140475647	+	Missense_Mutation	SNP	G	G	A	rs149320062	byfrequency	TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	PCDHB2	NM_018936	exon1	c.G1273A	p.V425I	ATCACCGTCACCG	.	247.0	26.0	185.0	0.0	G|0.999;A|0.001	.	Atlas-SNP
ASPN	54829	hgsc.bcm.edu	37	9	95237024	95237024	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	ASPN	NM_001193335	exon2	c.G156T	p.E52D	GTTGTCCTCATCA	.	97.0	9.0	113.0	0.0	.	.	Atlas-SNP
MYH10	4628	hgsc.bcm.edu	37	17	8455401	8455401	+	Silent	SNP	A	A	G	rs200432425		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	MYH10	NM_001256012	exon9	c.T882C	p.F294F	CTGGTAAAAGATA	.	90.0	7.0	124.0	0.0	A|0.999;G|0.001	.	Atlas-SNP
GRIA3	2892	hgsc.bcm.edu	37	X	122336604	122336604	+	Missense_Mutation	SNP	C	C	G	rs72609489		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	GRIA3	NM_001256743	exon3	c.C385G	p.P129A	GGTGGGCCCGCCA	.	60.0	15.0	56.0	0.0	.	.	Atlas-SNP
SCRN3	79634	hgsc.bcm.edu	37	2	175292599	175292599	+	Missense_Mutation	SNP	T	T	G	rs74729826	byfrequency	TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	SCRN3	NM_024583	exon8	c.T1251G	p.N417K	GTCAAATTTATCA	.	293.0	31.0	260.0	0.0	T|0.842;G|0.157	.	Atlas-SNP
EML6	400954	hgsc.bcm.edu	37	2	55040425	55040425	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	.	NM_001039753	exon2	c.C254T	p.P85L	AGGAGCCATATAT	.	123.0	40.0	99.0	0.0	.	.	Atlas-SNP
CYFIP2	26999	hgsc.bcm.edu	37	5	156721860	156721860	+	Silent	SNP	C	C	A	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	CYFIP2	NM_001037332	exon4	c.C276A	p.A92A	CCGGGCCATTCCC	.	259.0	17.0	214.0	0.0	.	.	Atlas-SNP
IKZF1	10320	hgsc.bcm.edu	37	7	50467992	50467992	+	Silent	SNP	C	C	T	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	IKZF1	NM_006060	exon8	c.C1227T	p.S409S	GCGCAGCGGTCTC	.	117.0	20.0	71.0	0.0	.	.	Atlas-SNP
SSPO	23145	hgsc.bcm.edu	37	7	149476671	149476671	+	Missense_Mutation	SNP	T	T	C	rs201032059		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	.	NM_198455	exon10	c.T1121C	p.L374P	AGCCCCTGGGGCT	.	206.0	24.0	220.0	0.0	.	.	Atlas-SNP
CCDC33	80125	hgsc.bcm.edu	37	15	74560701	74560701	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	CCDC33	NM_025055	exon5	c.G448A	p.A150T	GGGAAAGCCGATG	.	160.0	42.0	131.0	0.0	.	.	Atlas-SNP
TP53	7157	hgsc.bcm.edu	37	17	7578460	7578460	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	TP53,head_neck,carcinoma,-1	TP53	NM_000546	exon5	c.T470G	p.V157G	GCGCGGACGCGGG	.	93.0	37.0	145.0	0.0	.	.	Atlas-SNP
BIRC6	57448	hgsc.bcm.edu	37	2	32733177	32733177	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	BIRC6	NM_016252	exon51	c.T9831C	p.A3277A	TTCTGCTGTCTGC	.	216.0	92.0	167.0	0.0	.	.	Atlas-SNP
TNRC6A	27327	hgsc.bcm.edu	37	16	24826473	24826473	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	TNRC6A	NM_014494	exon19	c.A4678C	p.I1560L	GGTGCTATTTCAA	.	212.0	60.0	178.0	0.0	.	.	Atlas-SNP
SYT12	91683	hgsc.bcm.edu	37	11	66811279	66811279	+	Silent	SNP	G	G	A	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	SYT12	NM_001177880	exon5	c.G792A	p.P264P	CCTCCCGCTGCAG	.	109.0	17.0	84.0	0.0	.	.	Atlas-SNP
VCAN	1462	hgsc.bcm.edu	37	5	82836233	82836233	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	VCAN	NM_004385	exon8	c.G7411T	p.V2471L	CCTGAGGTGCCAA	.	187.0	54.0	116.0	0.0	.	.	Atlas-SNP
GPATCH4	54865	hgsc.bcm.edu	37	1	156565049	156565049	+	Missense_Mutation	SNP	A	A	C	rs77528517	byfrequency	TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	GPATCH4	NM_015590	exon8	c.T1084G	p.F362V	ACCTAAAAGTTTC	.	496.0	32.0	298.0	0.0	A|0.333;C|0.333;G|0.333	.	Atlas-SNP
PPP2R5C	5527	hgsc.bcm.edu	37	14	102349777	102349777	+	Silent	SNP	G	G	A	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	PPP2R5C	NM_001161726	exon7	c.G672A	p.E224E	TTTAGAGCTCTTT	.	91.0	15.0	94.0	0.0	.	.	Atlas-SNP
TOMM70A	9868	hgsc.bcm.edu	37	3	100093979	100093979	+	Silent	SNP	G	G	A	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	TOMM70A	NM_014820	exon7	c.C1110T	p.L370L	TTTGATGAGAGCA	.	54.0	19.0	58.0	0.0	.	.	Atlas-SNP
SSPO	23145	hgsc.bcm.edu	37	7	149476665	149476665	+	Splice_Site	SNP	A	A	G	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	.	NM_198455	exon9	c.1116+1A>G	.	TGTGACAGCCCCT	.	204.0	9.0	229.0	0.0	.	.	Atlas-SNP
OR6S1	341799	hgsc.bcm.edu	37	14	21109487	21109487	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	OR6S1	NM_001001968	exon1	c.G364A	p.A122T	GATCCGCAGACAT	.	117.0	23.0	114.0	0.0	.	.	Atlas-SNP
ZNF862	643641	hgsc.bcm.edu	37	7	149558251	149558251	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	ZNF862	NM_001099220	exon7	c.G2002A	p.D668N	ACAGCAGATGGGT	.	187.0	64.0	177.0	0.0	.	.	Atlas-SNP
TMPRSS15	5651	hgsc.bcm.edu	37	21	19770597	19770597	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	TMPRSS15	NM_002772	exon2	c.A195G	p.T65T	TCCGGATGTTATT	.	71.0	23.0	44.0	0.0	.	.	Atlas-SNP
CREB3L1	90993	hgsc.bcm.edu	37	11	46342259	46342259	+	Splice_Site	SNP	A	A	G	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	CREB3L1	NM_052854	exon12	c.1524-1A>G	.	CTCTCCAGGATCT	.	108.0	11.0	83.0	0.0	.	.	Atlas-SNP
ZNF2	7549	hgsc.bcm.edu	37	2	95847047	95847047	+	Silent	SNP	G	G	A	rs112887855		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	ZNF2	NM_021088	exon5	c.G474A	p.R158R	GCGGCGGCGACGG	.	66.0	7.0	90.0	0.0	G|0.500;A|0.500	.	Atlas-SNP
SLITRK6	84189	hgsc.bcm.edu	37	13	86369434	86369434	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	SLITRK6	NM_032229	exon2	c.G1210A	p.E404K	ATCCTTCTTCAAG	.	107.0	15.0	40.0	0.0	.	.	Atlas-SNP
LMO7	4008	hgsc.bcm.edu	37	13	76381924	76381924	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	LMO7	NM_015842	exon7	c.G806A	p.C269Y	TACAGTGTAGAGA	.	91.0	5.0	54.0	0.0	.	.	Atlas-SNP
GRIA3	2892	hgsc.bcm.edu	37	X	122336607	122336607	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	GRIA3	NM_001256743	exon3	c.G388C	p.A130P	GGGCCCGCCAAAA	.	55.0	9.0	54.0	0.0	.	.	Atlas-SNP
SLC36A3	285641	hgsc.bcm.edu	37	5	150666921	150666921	+	Silent	SNP	G	G	T	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	SLC36A3	NM_001145017	exon7	c.C717A	p.P239P	CAGGAAGGGCAGG	.	224.0	61.0	165.0	0.0	.	.	Atlas-SNP
SIGLEC12	89858	hgsc.bcm.edu	37	19	52004796	52004796	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	SIGLEC12	NM_053003	exon1	c.C192A	p.F64L	TGCCCGGAACCAG	.	155.0	14.0	112.0	0.0	.	.	Atlas-SNP
OR4C16	219428	hgsc.bcm.edu	37	11	55339830	55339830	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	OR4C16	NM_001004701	exon1	c.C227G	p.T76S	CCATAACCCCTAG	.	217.0	11.0	145.0	0.0	.	.	Atlas-SNP
HSP90AA1	3320	hgsc.bcm.edu	37	14	102551254	102551254	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	HSP90AA1	NM_001017963	exon6	c.G1111A	p.E371K	CTTTCTCTTCTTT	.	119.0	16.0	103.0	0.0	.	.	Atlas-SNP
SALL3	27164	hgsc.bcm.edu	37	18	76752545	76752545	+	Missense_Mutation	SNP	C	C	T	rs191414199		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	SALL3	NM_171999	exon2	c.C554T	p.A185V	AGGGCGCGCGCGC	.	8.0	7.0	0.0	0.0	C|0.967;T|0.033	.	Atlas-SNP
DUOX2	50506	hgsc.bcm.edu	37	15	45386375	45386375	+	Silent	SNP	G	G	A	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	DUOX2	NM_014080	exon34	c.C4620T	p.H1540H	CATGAAGTGGGCT	.	171.0	51.0	126.0	0.0	.	.	Atlas-SNP
CYFIP2	26999	hgsc.bcm.edu	37	5	156721861	156721861	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	CYFIP2	NM_001037332	exon4	c.A277T	p.I93F	CGGGCCATTCCCA	.	256.0	18.0	212.0	0.0	.	.	Atlas-SNP
CREB3L1	90993	hgsc.bcm.edu	37	11	46342258	46342258	+	Splice_Site	SNP	C	C	A	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	CREB3L1	NM_052854	exon12	c.1524-2C>A	.	TCTCTCCAGGATC	.	107.0	10.0	80.0	0.0	.	.	Atlas-SNP
CD207	50489	hgsc.bcm.edu	37	2	71062832	71062832	+	Splice_Site	SNP	T	T	G	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	CD207	NM_015717	exon2	c.73+2A>C	.	GTGGCTTGCTCGG	.	248.0	13.0	214.0	0.0	.	.	Atlas-SNP
KANK4	163782	hgsc.bcm.edu	37	1	62739460	62739460	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	KANK4	NM_181712	exon3	c.G1316C	p.S439T	TCCATGCTGCCTA	.	199.0	47.0	121.0	0.0	.	.	Atlas-SNP
MAP1B	4131	hgsc.bcm.edu	37	5	71492183	71492183	+	Missense_Mutation	SNP	G	G	A	rs144088322		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	MAP1B	NM_005909	exon5	c.G3001A	p.E1001K	CGAGCCGAAGAAG	.	127.0	43.0	128.0	0.0	G|1.000;A|0.000	.	Atlas-SNP
CD207	50489	hgsc.bcm.edu	37	2	71062837	71062837	+	Missense_Mutation	SNP	G	G	C	rs202094824	alternate_allele	TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	CD207	NM_015717	exon1	c.C70G	p.R24G	TTGCTCGGGGCCA	.	253.0	22.0	223.0	0.0	G|0.998;A|0.002	.	Atlas-SNP
SENP1	29843	hgsc.bcm.edu	37	12	48482714	48482714	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	SENP1	NM_001267594	exon5	c.T250C	p.S84P	CGCCTGAGCCAAG	.	100.0	38.0	67.0	0.0	.	.	Atlas-SNP
C11orf40	143501	hgsc.bcm.edu	37	11	4592708	4592708	+	Missense_Mutation	SNP	C	C	G	rs79804156		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	C11orf40	NM_144663	exon4	c.G599C	p.C200S	TCCATACAGTTTT	.	126.0	14.0	122.0	0.0	.	.	Atlas-SNP
BMPER	168667	hgsc.bcm.edu	37	7	33976996	33976996	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	BMPER	NM_133468	exon4	c.C315A	p.C105X	ACAGTGCAAAGGT	.	97.0	24.0	109.0	0.0	.	.	Atlas-SNP
COL1A2	1278	hgsc.bcm.edu	37	7	94043219	94043219	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	COL1A2	NM_000089	exon28	c.G1625T	p.G542V	AAGGTGGAAAAGG	.	183.0	20.0	157.0	0.0	.	.	Atlas-SNP
KIAA1731	85459	hgsc.bcm.edu	37	11	93432541	93432541	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	KIAA1731	NM_033395	exon15	c.T4463A	p.F1488Y	GTAAATTTGAGGA	.	149.0	43.0	106.0	0.0	.	.	Atlas-SNP
SPATA19	219938	hgsc.bcm.edu	37	11	133711936	133711936	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	SPATA19	NM_174927	exon6	c.T502C	p.X168R	GCTCTCAGCAGTC	.	117.0	41.0	66.0	0.0	.	.	Atlas-SNP
CEACAM20	125931	hgsc.bcm.edu	37	19	45016992	45016992	+	Splice_Site	SNP	T	T	C	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	CEACAM20	NM_001102600	exon9	c.1447+1A>G	.	GGTCCTTCTGTTG	.	28.0	7.0	0.0	0.0	.	.	Atlas-SNP
OR1J2	26740	hgsc.bcm.edu	37	9	125273393	125273393	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	OR1J2	NM_054107	exon1	c.A313T	p.I105L	TTTTTTATATTTT	.	134.0	7.0	108.0	0.0	.	.	Atlas-SNP
NR3C1	2908	hgsc.bcm.edu	37	5	142680214	142680214	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	NR3C1	NM_001024094	exon5	c.T1586G	p.L529R	GGGGTGAGTTGTG	.	251.0	76.0	234.0	0.0	.	.	Atlas-SNP
CLTCL1	8218	hgsc.bcm.edu	37	22	19189001	19189001	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	CLTCL1	NM_001835	exon23	c.G3604T	p.G1202X	GGTCTCCAACTAC	.	102.0	7.0	85.0	0.0	.	.	Atlas-SNP
ODF1	4956	hgsc.bcm.edu	37	8	103573019	103573019	+	Silent	SNP	C	C	G	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	ODF1	NM_024410	exon2	c.C660G	p.P220P	CAACCCCTGCAGC	.	176.0	78.0	65.0	0.0	.	.	Atlas-SNP
ABCA13	154664	hgsc.bcm.edu	37	7	48313397	48313397	+	Silent	SNP	A	A	G	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	ABCA13	NM_152701	exon17	c.A4134G	p.L1378L	CACGTTAAATTCC	.	82.0	21.0	66.0	0.0	.	.	Atlas-SNP
SIGLEC12	89858	hgsc.bcm.edu	37	19	52004797	52004797	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	SIGLEC12	NM_053003	exon1	c.T191C	p.F64S	GCCCGGAACCAGT	.	155.0	9.0	114.0	0.0	.	.	Atlas-SNP
TTLL4	9654	hgsc.bcm.edu	37	2	219604821	219604821	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	TTLL4	NM_014640	exon4	c.G1528T	p.D510Y	ACTGAAGATACAG	.	231.0	25.0	185.0	0.0	.	.	Atlas-SNP
THAP11	57215	hgsc.bcm.edu	37	16	67876826	67876826	+	Silent	SNP	G	G	A	rs63117363	byfrequency	TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	THAP11	NM_020457	exon1	c.G369A	p.Q123Q	GCAACAGCAGCAG	.	41.0	15.0	14.0	0.0	G|0.986;A|0.014	.	Atlas-SNP
OR11G2	390439	hgsc.bcm.edu	37	14	20666184	20666184	+	Silent	SNP	C	C	G	rs74538160		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	OR11G2	NM_001005503	exon1	c.C690G	p.G230G	AAAAGGCCCTGTG	.	185.0	12.0	130.0	0.0	.	.	Atlas-SNP
AMD1	262	hgsc.bcm.edu	37	6	111213937	111213937	+	Splice_Site	SNP	G	G	A	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	AMD1	NM_001634	exon7	c.616-1G>A	.	CCCCCAGGAGAGT	.	173.0	7.0	215.0	0.0	.	.	Atlas-SNP
TENM2	57451	hgsc.bcm.edu	37	5	167553853	167553853	+	Silent	SNP	C	C	T	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	.	NM_001122679	exon12	c.C2304T	p.R768R	CCAGCGCGTGTGC	.	231.0	66.0	199.0	0.0	.	.	Atlas-SNP
THAP11	57215	hgsc.bcm.edu	37	16	67876823	67876823	+	Silent	SNP	A	A	G	rs28647874	bycluster;byfrequency	TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	THAP11	NM_020457	exon1	c.A366G	p.Q122Q	GCAGCAACAGCAG	.	49.0	14.0	23.0	0.0	A|0.985;G|0.015	.	Atlas-SNP
TCEAL6	158931	hgsc.bcm.edu	37	X	101395773	101395773	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	TCEAL6	NM_001006938	exon3	c.C531A	p.D177E	CCCGTTGTCCCCT	.	141.0	10.0	68.0	0.0	.	.	Atlas-SNP
NR1H2	7376	hgsc.bcm.edu	37	19	50881825	50881825	+	Silent	SNP	G	G	A	rs55817866	byfrequency	TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	NR1H2	NM_007121	exon6	c.G519A	p.Q173Q	GAAACAGCAGCAG	.	106.0	15.0	90.0	0.0	G|0.903;A|0.097	.	Atlas-SNP
TMPRSS13	84000	hgsc.bcm.edu	37	11	117789314	117789314	+	Silent	SNP	G	G	A	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	TMPRSS13	NM_001206790	exon2	c.C261T	p.A87A	TGCCCGGGCTGGA	.	139.0	17.0	47.0	0.0	.	.	Atlas-SNP
OR7A10	390892	hgsc.bcm.edu	37	19	14952035	14952035	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	OR7A10	NM_001005190	exon1	c.T655G	p.S219A	TCTTAGAGTAAGA	.	65.0	15.0	43.0	0.0	.	.	Atlas-SNP
PKN2	5586	hgsc.bcm.edu	37	1	89236054	89236054	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	PKN2	NM_006256	exon4	c.C524A	p.T175K	ATGGTACAGCTCA	.	141.0	34.0	132.0	0.0	.	.	Atlas-SNP
VCAN	1462	hgsc.bcm.edu	37	5	82833962	82833962	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	VCAN	NM_004385	exon8	c.T5140C	p.W1714R	TCTGAGTGGATTT	.	89.0	30.0	77.0	0.0	.	.	Atlas-SNP
SSPO	23145	hgsc.bcm.edu	37	7	149476666	149476666	+	Splice_Site	SNP	G	G	C	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	.	NM_198455	exon9	c.1116+2G>C	.	GTGACAGCCCCTG	.	204.0	12.0	225.0	0.0	.	.	Atlas-SNP
WDR44	54521	hgsc.bcm.edu	37	X	117566781	117566781	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	WDR44	NM_001184965	exon13	c.A1775T	p.N592I	ATAAAAACGCACC	.	162.0	7.0	105.0	0.0	.	.	Atlas-SNP
MDGA1	266727	hgsc.bcm.edu	37	6	37616904	37616904	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	MDGA1	NM_153487	exon9	c.C1748A	p.P583Q	GGCGGCGGCAGCA	.	9.0	8.0	0.0	0.0	.	.	Atlas-SNP
BCL10	8915	hgsc.bcm.edu	37	1	85733444	85733444	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	BCL10	NM_003921	exon3	c.A568G	p.T190A	GTGTAGTTGAAGA	.	77.0	15.0	74.0	0.0	.	.	Atlas-SNP
HECTD1	25831	hgsc.bcm.edu	37	14	31626433	31626433	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	HECTD1	NM_015382	exon11	c.G1699A	p.D567N	CAACATCAGAATC	.	186.0	70.0	194.0	0.0	.	.	Atlas-SNP
DYNC1H1	1778	hgsc.bcm.edu	37	14	102489191	102489191	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	DYNC1H1	NM_001376	exon43	c.A8611G	p.I2871V	CGACCCATCTTGT	.	125.0	22.0	128.0	0.0	.	.	Atlas-SNP
DENND4B	9909	hgsc.bcm.edu	37	1	153907287	153907287	+	Missense_Mutation	SNP	G	G	C	rs199597671		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	DENND4B	NM_014856	exon18	c.C2722G	p.Q908E	GCTGCTGCTGCTG	.	163.0	13.0	62.0	0.0	.	.	Atlas-SNP
TMPRSS13	84000	hgsc.bcm.edu	37	11	117789312	117789312	+	Missense_Mutation	SNP	C	C	A	rs200637340	alternate_allele	TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	TMPRSS13	NM_001206790	exon2	c.G263T	p.R88L	GATGCCCGGGCTG	.	141.0	13.0	157.0	0.0	C|0.999;T|0.000	.	Atlas-SNP
MUC13	56667	hgsc.bcm.edu	37	3	124646709	124646709	+	Missense_Mutation	SNP	G	G	A	rs75727765		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	MUC13	NM_033049	exon2	c.C181T	p.P61S	GGAAAGGTGTATT	.	130.0	8.0	91.0	0.0	.	.	Atlas-SNP
HSP90AA1	3320	hgsc.bcm.edu	37	14	102551272	102551272	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	HSP90AA1	NM_001017963	exon6	c.G1093A	p.E365K	TTTCTTCTTCTTT	.	109.0	14.0	102.0	0.0	.	.	Atlas-SNP
OR2V2	285659	hgsc.bcm.edu	37	5	180582260	180582260	+	Silent	SNP	C	C	T	rs201952686		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	OR2V2	NM_206880	exon1	c.C318T	p.V106V	CTTTGTCTGTCTT	.	44.0	19.0	10.0	0.0	.	.	Atlas-SNP
SSPO	23145	hgsc.bcm.edu	37	7	149506213	149506213	+	Splice_Site	SNP	T	T	C	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	.	NM_198455	exon63	c.9204+1T>C	.	AGCAGCTGCGCAG	.	310.0	15.0	329.0	0.0	.	.	Atlas-SNP
LCE4A	199834	hgsc.bcm.edu	37	1	152681696	152681696	+	Missense_Mutation	SNP	G	G	T	rs79268808		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	LCE4A	NM_178356	exon1	c.G145T	p.G49C	GGCTGTGGTTGCT	.	251.0	14.0	137.0	0.0	.	.	Atlas-SNP
TNIP3	79931	hgsc.bcm.edu	37	4	122078317	122078317	+	Missense_Mutation	SNP	T	T	C	rs10000692	byfrequency	TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	TNIP3	NM_001244764	exon7	c.A526G	p.K176E	CGTCCTTTCTCTG	.	102.0	32.0	74.0	0.0	T|0.975;C|0.025	.	Atlas-SNP
C3orf22	152065	hgsc.bcm.edu	37	3	126270923	126270923	+	Silent	SNP	G	G	A	rs34760151	byfrequency;alternate_allele	TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	C3orf22	NM_152533	exon3	c.C132T	p.P44P	CTCCCAGGGCTGC	.	113.0	31.0	93.0	0.0	G|0.687;C|0.313	.	Atlas-SNP
C3	718	hgsc.bcm.edu	37	19	6718129	6718129	+	Silent	SNP	G	G	A	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	C3	NM_000064	exon4	c.C480T	p.G160G	CGTCCGGCCCACG	.	96.0	31.0	91.0	0.0	.	.	Atlas-SNP
AGK	55750	hgsc.bcm.edu	37	7	141333731	141333731	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	AGK	NM_018238	exon10	c.A619T	p.T207S	GCAATGACCGGCC	.	58.0	20.0	34.0	0.0	.	.	Atlas-SNP
LGI4	163175	hgsc.bcm.edu	37	19	35617456	35617456	+	Silent	SNP	C	C	T	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	LGI4	NM_139284	exon8	c.G1017A	p.A339A	GCTGCCCGCCTTG	.	7.0	6.0	2.0	0.0	.	.	Atlas-SNP
RAPGEF3	10411	hgsc.bcm.edu	37	12	48151829	48151829	+	Silent	SNP	C	C	T	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	RAPGEF3	NM_001098531	exon2	c.G39A	p.V13V	CAGGCCCACCTGC	.	59.0	11.0	49.0	0.0	.	.	Atlas-SNP
ZFYVE27	118813	hgsc.bcm.edu	37	10	99517436	99517436	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	ZFYVE27	NM_001002261	exon11	c.G1142T	p.R381L	GCTCTCGATGCTG	.	172.0	57.0	158.0	0.0	.	.	Atlas-SNP
ADCY10	55811	hgsc.bcm.edu	37	1	167874253	167874253	+	Silent	SNP	G	G	C	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	ADCY10	NM_018417	exon2	c.C126G	p.V42V	CATCAGGACTCCG	.	372.0	84.0	167.0	0.0	.	.	Atlas-SNP
COBL	23242	hgsc.bcm.edu	37	7	51098573	51098573	+	Missense_Mutation	SNP	T	T	A	rs76265922	byfrequency	TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	COBL	NM_015198	exon9	c.A1440T	p.E480D	GTCTTCTTCATCA	.	145.0	19.0	135.0	0.0	T|0.988;A|0.012	.	Atlas-SNP
ATN1	1822	hgsc.bcm.edu	37	12	7045900	7045900	+	Missense_Mutation	SNP	G	G	C	rs142238167	byfrequency;alternate_allele	TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	ATN1	NM_001007026	exon5	c.G1470C	p.Q490H	GCAGCAGCAGCAG	.	68.0	19.0	41.0	0.0	G|0.985;A|0.015	.	Atlas-SNP
RP1L1	94137	hgsc.bcm.edu	37	8	10466019	10466019	+	Silent	SNP	A	A	T	rs199577777	byfrequency	TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	RP1L1	NM_178857	exon4	c.T5589A	p.A1863A	CCCTTCAGCCTCC	.	62.0	15.0	46.0	0.0	A|0.993;T|0.007	.	Atlas-SNP
SLC45A4	57210	hgsc.bcm.edu	37	8	142231725	142231725	+	Silent	SNP	G	G	A	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	SLC45A4	NM_001080431	exon2	c.C228T	p.C76C	GCCAACGCAGAGG	.	216.0	32.0	101.0	0.0	.	.	Atlas-SNP
GOT1L1	137362	hgsc.bcm.edu	37	8	37791908	37791908	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	GOT1L1	NM_152413	exon9	c.A1169G	p.Y390C	GTGATGTAATTTA	.	301.0	67.0	331.0	0.0	.	.	Atlas-SNP
NOP9	161424	hgsc.bcm.edu	37	14	24769849	24769849	+	Silent	SNP	A	A	G	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	.	NM_174913	exon2	c.A483G	p.A161A	TGCTGCAGAGGAG	.	127.0	6.0	135.0	0.0	.	.	Atlas-SNP
MICA	100507436	hgsc.bcm.edu	37	6	31380101	31380101	+	Splice_Site	SNP	G	G	A	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	.	NM_001177519	exon5	c.893-1G>A	.	TTTTCAGGGAAAG	.	218.0	10.0	138.0	0.0	.	.	Atlas-SNP
TUSC3	7991	hgsc.bcm.edu	37	8	15398006	15398006	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	TUSC3	NM_178234	exon1	c.G67A	p.G23R	CCCACCGGGAGCT	.	198.0	81.0	152.0	0.0	.	.	Atlas-SNP
HRC	3270	hgsc.bcm.edu	37	19	49657751	49657751	+	Silent	SNP	A	A	G	rs142699460	byfrequency	TCGA-DD-A1EG-01A-11D-A20W-10	TCGA-DD-A1EG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	50ee360c-e3df-4888-9999-ebb88e271d08	636fb0c9-ce48-45f0-a066-45004952b47f	.	HRC	NM_002152	exon1	c.T744C	p.D248D	ATCATCATCGTCA	.	129.0	6.0	99.0	0.0	A|0.998;G|0.002	.	Atlas-SNP
