Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	Algorithm
UBR1	197131	hgsc.bcm.edu	37	15	43363075	43363075	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-BC-A3KG-01A-11D-A20W-10	TCGA-BC-A3KG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3d178885-f113-42a2-b34d-d564960d9314	685e0c81-2971-413a-9a2e-de27a62de591	.	UBR1	NM_174916	exon5	c.578delT	p.I193fs	.	.	130.0	12.0	74.0	0.0	.	.	Atlas-Indel
TNRC18	84629	hgsc.bcm.edu	37	7	5410486	5410486	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-BC-A3KG-01A-11D-A20W-10	TCGA-BC-A3KG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3d178885-f113-42a2-b34d-d564960d9314	685e0c81-2971-413a-9a2e-de27a62de591	.	TNRC18	NM_001080495	exon11	c.3740delT	p.V1247fs	.	.	144.0	10.0	168.0	0.0	.	.	Atlas-Indel
SCAMP5	192683	hgsc.bcm.edu	37	15	75308993	75308993	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-BC-A3KG-01A-11D-A20W-10	TCGA-BC-A3KG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3d178885-f113-42a2-b34d-d564960d9314	685e0c81-2971-413a-9a2e-de27a62de591	.	SCAMP5	NM_001178111	exon5	c.195delC	p.G65fs	.	.	155.0	10.0	123.0	0.0	.	.	Atlas-Indel
NOL10	79954	hgsc.bcm.edu	37	2	10729763	10729763	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-BC-A3KG-01A-11D-A20W-10	TCGA-BC-A3KG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3d178885-f113-42a2-b34d-d564960d9314	685e0c81-2971-413a-9a2e-de27a62de591	.	.	NM_024894	exon18	c.1538delT	p.I513fs	.	.	140.0	10.0	120.0	0.0	.	.	Atlas-Indel
ACAN	176	hgsc.bcm.edu	37	15	89415310	89415310	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-BC-A3KG-01A-11D-A20W-10	TCGA-BC-A3KG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3d178885-f113-42a2-b34d-d564960d9314	685e0c81-2971-413a-9a2e-de27a62de591	.	ACAN	NM_013227	exon15	c.7181delA	p.H2394fs	.	.	145.0	10.0	169.0	0.0	.	.	Atlas-Indel
ARID1B	57492	hgsc.bcm.edu	37	6	157528676	157528676	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-BC-A3KG-01A-11D-A20W-10	TCGA-BC-A3KG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3d178885-f113-42a2-b34d-d564960d9314	685e0c81-2971-413a-9a2e-de27a62de591	.	ARID1B	NM_020732	exon20	c.6400delC	p.L2134fs	.	.	153.0	10.0	123.0	0.0	.	.	Atlas-Indel
RFX5	5993	hgsc.bcm.edu	37	1	151318753	151318753	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-BC-A3KG-01A-11D-A20W-10	TCGA-BC-A3KG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3d178885-f113-42a2-b34d-d564960d9314	685e0c81-2971-413a-9a2e-de27a62de591	.	RFX5	NM_000449	exon3	c.45delA	p.G15fs	.	.	247.0	16.0	118.0	0.0	.	.	Atlas-Indel
QARS	5859	hgsc.bcm.edu	37	3	49140816	49140816	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-BC-A3KG-01A-11D-A20W-10	TCGA-BC-A3KG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3d178885-f113-42a2-b34d-d564960d9314	685e0c81-2971-413a-9a2e-de27a62de591	.	QARS	NM_005051	exon5	c.479delC	p.A160fs	.	.	140.0	12.0	122.0	0.0	.	.	Atlas-Indel
WIF1	11197	hgsc.bcm.edu	37	12	65514293	65514293	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-BC-A3KG-01A-11D-A20W-10	TCGA-BC-A3KG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3d178885-f113-42a2-b34d-d564960d9314	685e0c81-2971-413a-9a2e-de27a62de591	.	WIF1	NM_007191	exon2	c.193delC	p.P65fs	.	.	160.0	10.0	142.0	0.0	.	.	Atlas-Indel
KIAA1551	55196	hgsc.bcm.edu	37	12	32138119	32138119	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-BC-A3KG-01A-11D-A20W-10	TCGA-BC-A3KG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3d178885-f113-42a2-b34d-d564960d9314	685e0c81-2971-413a-9a2e-de27a62de591	.	.	NM_018169	exon4	c.4229delC	p.S1410fs	.	.	161.0	10.0	153.0	0.0	.	.	Atlas-Indel
CDC123	8872	hgsc.bcm.edu	37	10	12259467	12259470	+	Frame_Shift_Del	DEL	GTAA	GTAA	-	novel		TCGA-BC-A3KG-01A-11D-A20W-10	TCGA-BC-A3KG-10A-01D-A20W-10	GTAA	GTAA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3d178885-f113-42a2-b34d-d564960d9314	685e0c81-2971-413a-9a2e-de27a62de591	.	CDC123	NM_006023	exon6	c.440_440del	p.147_147del	.	.	73.0	24.0	107.0	0.0	.	.	Atlas-Indel
HNRNPK	3190	hgsc.bcm.edu	37	9	86591918	86591918	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-BC-A3KG-01A-11D-A20W-10	TCGA-BC-A3KG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3d178885-f113-42a2-b34d-d564960d9314	685e0c81-2971-413a-9a2e-de27a62de591	.	HNRNPK	NM_031263	exon5	c.206delG	p.R69fs	.	.	136.0	10.0	100.0	0.0	.	.	Atlas-Indel
HNRNPH3	3189	hgsc.bcm.edu	37	10	70101436	70101436	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-BC-A3KG-01A-11D-A20W-10	TCGA-BC-A3KG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3d178885-f113-42a2-b34d-d564960d9314	685e0c81-2971-413a-9a2e-de27a62de591	.	HNRNPH3	NM_012207	exon8	c.869delT	p.M290fs	.	.	115.0	10.0	132.0	0.0	.	.	Atlas-Indel
MAP1B	4131	hgsc.bcm.edu	37	5	71493243	71493243	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-BC-A3KG-01A-11D-A20W-10	TCGA-BC-A3KG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3d178885-f113-42a2-b34d-d564960d9314	685e0c81-2971-413a-9a2e-de27a62de591	.	MAP1B	NM_005909	exon5	c.4060delG	p.E1354fs	.	.	139.0	10.0	133.0	0.0	.	.	Atlas-Indel
WDR70	55100	hgsc.bcm.edu	37	5	37752658	37752658	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-BC-A3KG-01A-11D-A20W-10	TCGA-BC-A3KG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3d178885-f113-42a2-b34d-d564960d9314	685e0c81-2971-413a-9a2e-de27a62de591	.	WDR70	NM_018034	exon18	c.1947delG	p.W649X	.	.	180.0	11.0	83.0	0.0	.	.	Atlas-Indel
RHBDF2	79651	hgsc.bcm.edu	37	17	74473785	74473787	+	In_Frame_Del	DEL	TCC	TCC	-	novel		TCGA-BC-A3KG-01A-11D-A20W-10	TCGA-BC-A3KG-10A-01D-A20W-10	TCC	TCC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3d178885-f113-42a2-b34d-d564960d9314	685e0c81-2971-413a-9a2e-de27a62de591	.	RHBDF2	NM_024599	exon7	c.841_843del	p.281_281del	.	.	38.0	28.0	88.0	0.0	.	.	Atlas-Indel
ARHGEF17	9828	hgsc.bcm.edu	37	11	73020687	73020687	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-BC-A3KG-01A-11D-A20W-10	TCGA-BC-A3KG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3d178885-f113-42a2-b34d-d564960d9314	685e0c81-2971-413a-9a2e-de27a62de591	.	ARHGEF17	NM_014786	exon1	c.1003delG	p.A335fs	.	.	133.0	10.0	97.0	0.0	.	.	Atlas-Indel
NFASC	23114	hgsc.bcm.edu	37	1	204971735	204971735	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-BC-A3KG-01A-11D-A20W-10	TCGA-BC-A3KG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3d178885-f113-42a2-b34d-d564960d9314	685e0c81-2971-413a-9a2e-de27a62de591	.	NFASC	NM_001005388	exon27	c.3147delG	p.T1049fs	.	.	212.0	16.0	112.0	0.0	.	.	Atlas-Indel
ACSS1	84532	hgsc.bcm.edu	37	20	25002140	25002140	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-BC-A3KG-01A-11D-A20W-10	TCGA-BC-A3KG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3d178885-f113-42a2-b34d-d564960d9314	685e0c81-2971-413a-9a2e-de27a62de591	.	ACSS1	NM_001252677	exon6	c.994delG	p.G332fs	.	.	166.0	10.0	176.0	0.0	.	.	Atlas-Indel
C9orf72	203228	hgsc.bcm.edu	37	9	27566850	27566850	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-BC-A3KG-01A-11D-A20W-10	TCGA-BC-A3KG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3d178885-f113-42a2-b34d-d564960d9314	685e0c81-2971-413a-9a2e-de27a62de591	.	C9orf72	NM_018325	exon2	c.270delG	p.K90fs	.	.	179.0	13.0	182.0	0.0	.	.	Atlas-Indel
C10orf107	219621	hgsc.bcm.edu	37	10	63441027	63441027	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-BC-A3KG-01A-11D-A20W-10	TCGA-BC-A3KG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3d178885-f113-42a2-b34d-d564960d9314	685e0c81-2971-413a-9a2e-de27a62de591	.	C10orf107	NM_173554	exon2	c.26delC	p.S9X	.	.	102.0	10.0	75.0	0.0	.	.	Atlas-Indel
PRDM1	639	hgsc.bcm.edu	37	6	106553568	106553568	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-BC-A3KG-01A-11D-A20W-10	TCGA-BC-A3KG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3d178885-f113-42a2-b34d-d564960d9314	685e0c81-2971-413a-9a2e-de27a62de591	.	PRDM1	NM_001198	exon5	c.1532delG	p.S511fs	.	.	145.0	10.0	118.0	0.0	.	.	Atlas-Indel
ZMIZ2	83637	hgsc.bcm.edu	37	7	44796547	44796547	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-BC-A3KG-01A-11D-A20W-10	TCGA-BC-A3KG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3d178885-f113-42a2-b34d-d564960d9314	685e0c81-2971-413a-9a2e-de27a62de591	.	ZMIZ2	NM_174929	exon3	c.166delG	p.V56fs	.	.	151.0	10.0	165.0	0.0	.	.	Atlas-Indel
HADH	3033	hgsc.bcm.edu	37	4	108940796	108940796	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A3KG-01A-11D-A20W-10	TCGA-BC-A3KG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3d178885-f113-42a2-b34d-d564960d9314	685e0c81-2971-413a-9a2e-de27a62de591	.	HADH	NM_005327	exon4	c.C520T	p.P174S	TTCAACCCAGTGC	.	111.0	55.0	121.0	0.0	.	.	Atlas-SNP
CPT1A	1374	hgsc.bcm.edu	37	11	68530124	68530124	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A3KG-01A-11D-A20W-10	TCGA-BC-A3KG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3d178885-f113-42a2-b34d-d564960d9314	685e0c81-2971-413a-9a2e-de27a62de591	.	CPT1A	NM_001876	exon15	c.G1846A	p.V616M	CCCGCACGAAGTC	.	84.0	34.0	80.0	0.0	.	.	Atlas-SNP
VWA5A	4013	hgsc.bcm.edu	37	11	124013240	124013240	+	Silent	SNP	T	T	C	novel		TCGA-BC-A3KG-01A-11D-A20W-10	TCGA-BC-A3KG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3d178885-f113-42a2-b34d-d564960d9314	685e0c81-2971-413a-9a2e-de27a62de591	.	VWA5A	NM_014622	exon16	c.T2115C	p.G705G	CCTAGGTATGAGT	.	90.0	40.0	103.0	0.0	.	.	Atlas-SNP
VSX1	30813	hgsc.bcm.edu	37	20	25057157	25057157	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A3KG-01A-11D-A20W-10	TCGA-BC-A3KG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3d178885-f113-42a2-b34d-d564960d9314	685e0c81-2971-413a-9a2e-de27a62de591	.	VSX1	NM_014588	exon5	c.A838G	p.R280G	GCTTCCTTATCAT	.	97.0	4.0	88.0	0.0	.	.	Atlas-SNP
PRKAG2	51422	hgsc.bcm.edu	37	7	151372542	151372542	+	Silent	SNP	T	T	C	novel		TCGA-BC-A3KG-01A-11D-A20W-10	TCGA-BC-A3KG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3d178885-f113-42a2-b34d-d564960d9314	685e0c81-2971-413a-9a2e-de27a62de591	.	PRKAG2	NM_016203	exon4	c.A648G	p.P216P	TGCCAGTGGAGGC	.	71.0	59.0	162.0	0.0	.	.	Atlas-SNP
SLITRK4	139065	hgsc.bcm.edu	37	X	142717432	142717432	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A3KG-01A-11D-A20W-10	TCGA-BC-A3KG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3d178885-f113-42a2-b34d-d564960d9314	685e0c81-2971-413a-9a2e-de27a62de591	.	SLITRK4	NM_001184750	exon2	c.T1493C	p.L498S	CTAGCTAAGGGTG	.	244.0	113.0	273.0	0.0	.	.	Atlas-SNP
HSPG2	3339	hgsc.bcm.edu	37	1	22183660	22183660	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A3KG-01A-11D-A20W-10	TCGA-BC-A3KG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3d178885-f113-42a2-b34d-d564960d9314	685e0c81-2971-413a-9a2e-de27a62de591	.	HSPG2	NM_005529	exon44	c.G5423A	p.R1808H	TGCAGGCGGGTCC	.	202.0	90.0	235.0	0.0	.	.	Atlas-SNP
SYNE1	23345	hgsc.bcm.edu	37	6	152740820	152740820	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BC-A3KG-01A-11D-A20W-10	TCGA-BC-A3KG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3d178885-f113-42a2-b34d-d564960d9314	685e0c81-2971-413a-9a2e-de27a62de591	.	SYNE1	NM_033071	exon40	c.C5326A	p.Q1776K	CAAATTGCTGGTG	.	247.0	80.0	189.0	0.0	.	.	Atlas-SNP
CXCR7	57007	hgsc.bcm.edu	37	2	237489341	237489341	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BC-A3KG-01A-11D-A20W-10	TCGA-BC-A3KG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3d178885-f113-42a2-b34d-d564960d9314	685e0c81-2971-413a-9a2e-de27a62de591	.	CXCR7	NM_020311	exon2	c.A233T	p.D78V	GCTATGACACGCA	.	159.0	79.0	171.0	0.0	.	.	Atlas-SNP
MYH4	4622	hgsc.bcm.edu	37	17	10354170	10354170	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BC-A3KG-01A-11D-A20W-10	TCGA-BC-A3KG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3d178885-f113-42a2-b34d-d564960d9314	685e0c81-2971-413a-9a2e-de27a62de591	.	MYH4	NM_017533	exon29	c.C3908A	p.S1303Y	AGCTGAGAAACCA	.	145.0	124.0	249.0	0.0	.	.	Atlas-SNP
SIGLEC1	6614	hgsc.bcm.edu	37	20	3672111	3672111	+	Silent	SNP	G	G	A	novel		TCGA-BC-A3KG-01A-11D-A20W-10	TCGA-BC-A3KG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3d178885-f113-42a2-b34d-d564960d9314	685e0c81-2971-413a-9a2e-de27a62de591	.	SIGLEC1	NM_023068	exon17	c.C4467T	p.H1489H	CTCCGCGTGCAGC	.	358.0	174.0	363.0	0.0	.	.	Atlas-SNP
MED25	81857	hgsc.bcm.edu	37	19	50333046	50333046	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A3KG-01A-11D-A20W-10	TCGA-BC-A3KG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3d178885-f113-42a2-b34d-d564960d9314	685e0c81-2971-413a-9a2e-de27a62de591	.	MED25	NM_030973	exon6	c.G529A	p.G177R	CAGCGGGGGATCC	.	167.0	83.0	147.0	0.0	.	.	Atlas-SNP
NMBR	4829	hgsc.bcm.edu	37	6	142400004	142400004	+	Silent	SNP	C	C	T	rs149123905		TCGA-BC-A3KG-01A-11D-A20W-10	TCGA-BC-A3KG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3d178885-f113-42a2-b34d-d564960d9314	685e0c81-2971-413a-9a2e-de27a62de591	.	NMBR	NM_002511	exon2	c.G459A	p.T153T	CCCTGACGTCTGC	.	160.0	20.0	134.0	0.0	C|1.000;T|0.000	.	Atlas-SNP
CCDC102A	92922	hgsc.bcm.edu	37	16	57562804	57562804	+	Missense_Mutation	SNP	G	G	A	rs12935069		TCGA-BC-A3KG-01A-11D-A20W-10	TCGA-BC-A3KG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3d178885-f113-42a2-b34d-d564960d9314	685e0c81-2971-413a-9a2e-de27a62de591	.	CCDC102A	NM_033212	exon2	c.C286T	p.R96W	ACCACCGGCGCAT	.	10.0	10.0	0.0	0.0	G|0.001;A|0.999	.	Atlas-SNP
RASSF10	644943	hgsc.bcm.edu	37	11	13031942	13031942	+	Silent	SNP	G	G	T	novel		TCGA-BC-A3KG-01A-11D-A20W-10	TCGA-BC-A3KG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3d178885-f113-42a2-b34d-d564960d9314	685e0c81-2971-413a-9a2e-de27a62de591	.	.	NM_001080521	exon1	c.G819T	p.V273V	CTACGTGCAGGAC	.	363.0	169.0	453.0	0.0	.	.	Atlas-SNP
TTR	7276	hgsc.bcm.edu	37	18	29172906	29172906	+	Silent	SNP	T	T	A	novel		TCGA-BC-A3KG-01A-11D-A20W-10	TCGA-BC-A3KG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3d178885-f113-42a2-b34d-d564960d9314	685e0c81-2971-413a-9a2e-de27a62de591	.	TTR	NM_000371	exon2	c.T117A	p.A39A	AGATGCTGTCCGA	.	144.0	64.0	145.0	0.0	.	.	Atlas-SNP
GLI3	2737	hgsc.bcm.edu	37	7	42005877	42005877	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-BC-A3KG-01A-11D-A20W-10	TCGA-BC-A3KG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3d178885-f113-42a2-b34d-d564960d9314	685e0c81-2971-413a-9a2e-de27a62de591	.	GLI3	NM_000168	exon15	c.A2794T	p.K932X	CGTACTTGGCCTT	.	111.0	9.0	68.0	0.0	.	.	Atlas-SNP
SPEN	23013	hgsc.bcm.edu	37	1	16255127	16255127	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BC-A3KG-01A-11D-A20W-10	TCGA-BC-A3KG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3d178885-f113-42a2-b34d-d564960d9314	685e0c81-2971-413a-9a2e-de27a62de591	.	SPEN	NM_015001	exon11	c.G2392C	p.D798H	ACTTTTGATCCGG	.	43.0	16.0	45.0	0.0	.	.	Atlas-SNP
DCAF12L2	340578	hgsc.bcm.edu	37	X	125299293	125299293	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BC-A3KG-01A-11D-A20W-10	TCGA-BC-A3KG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3d178885-f113-42a2-b34d-d564960d9314	685e0c81-2971-413a-9a2e-de27a62de591	.	DCAF12L2	NM_001013628	exon1	c.C615A	p.D205E	TACGGTGTCACTC	.	246.0	49.0	266.0	0.0	.	.	Atlas-SNP
MTTP	4547	hgsc.bcm.edu	37	4	100532580	100532580	+	Silent	SNP	C	C	T	novel		TCGA-BC-A3KG-01A-11D-A20W-10	TCGA-BC-A3KG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3d178885-f113-42a2-b34d-d564960d9314	685e0c81-2971-413a-9a2e-de27a62de591	.	MTTP	NM_000253	exon15	c.C1959T	p.Y653Y	TCAGTACATTGGG	.	142.0	68.0	144.0	0.0	.	.	Atlas-SNP
SEMA3E	9723	hgsc.bcm.edu	37	7	83029465	83029465	+	Silent	SNP	T	T	G	novel		TCGA-BC-A3KG-01A-11D-A20W-10	TCGA-BC-A3KG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3d178885-f113-42a2-b34d-d564960d9314	685e0c81-2971-413a-9a2e-de27a62de591	.	SEMA3E	NM_012431	exon11	c.A1245C	p.I415I	AGGTTTTATGGCC	.	178.0	157.0	403.0	0.0	.	.	Atlas-SNP
KRT84	3890	hgsc.bcm.edu	37	12	52771877	52771877	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BC-A3KG-01A-11D-A20W-10	TCGA-BC-A3KG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3d178885-f113-42a2-b34d-d564960d9314	685e0c81-2971-413a-9a2e-de27a62de591	.	KRT84	NM_033045	exon9	c.G1744T	p.G582C	TGCGGCCGCCGCT	.	162.0	72.0	209.0	0.0	.	.	Atlas-SNP
TMEM215	401498	hgsc.bcm.edu	37	9	32784212	32784212	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BC-A3KG-01A-11D-A20W-10	TCGA-BC-A3KG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3d178885-f113-42a2-b34d-d564960d9314	685e0c81-2971-413a-9a2e-de27a62de591	.	TMEM215	NM_212558	exon2	c.G31T	p.G11W	AGGACTGGGCTGG	.	433.0	180.0	388.0	1.0	.	.	Atlas-SNP
CACNA1E	777	hgsc.bcm.edu	37	1	181701550	181701550	+	Silent	SNP	C	C	T	rs182071786	by1000genomes	TCGA-BC-A3KG-01A-11D-A20W-10	TCGA-BC-A3KG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3d178885-f113-42a2-b34d-d564960d9314	685e0c81-2971-413a-9a2e-de27a62de591	.	CACNA1E	NM_001205293	exon20	c.C2328T	p.S776S	CATGTCCGTGTGG	.	373.0	41.0	219.0	0.0	C|0.996;T|0.004	.	Atlas-SNP
EPOR	2057	hgsc.bcm.edu	37	19	11491862	11491862	+	Silent	SNP	G	G	T	novel		TCGA-BC-A3KG-01A-11D-A20W-10	TCGA-BC-A3KG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3d178885-f113-42a2-b34d-d564960d9314	685e0c81-2971-413a-9a2e-de27a62de591	.	EPOR	NM_000121	exon5	c.C609A	p.T203T	ACACTCGGTGCGG	.	25.0	22.0	63.0	0.0	.	.	Atlas-SNP
OR4C12	283093	hgsc.bcm.edu	37	11	50003747	50003747	+	Silent	SNP	A	A	T	novel		TCGA-BC-A3KG-01A-11D-A20W-10	TCGA-BC-A3KG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3d178885-f113-42a2-b34d-d564960d9314	685e0c81-2971-413a-9a2e-de27a62de591	.	OR4C12	NM_001005270	exon1	c.T291A	p.A97A	GGCTTGAGCCATA	.	209.0	99.0	225.0	0.0	.	.	Atlas-SNP
TP53	7157	hgsc.bcm.edu	37	17	7577565	7577565	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A3KG-01A-11D-A20W-10	TCGA-BC-A3KG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3d178885-f113-42a2-b34d-d564960d9314	685e0c81-2971-413a-9a2e-de27a62de591	TP53,NS,carcinoma,-1	TP53	NM_000546	exon7	c.A716G	p.N239S	GAACTGTTACACA	.	111.0	98.0	265.0	0.0	.	.	Atlas-SNP
MTF2	22823	hgsc.bcm.edu	37	1	93545089	93545089	+	Splice_Site	SNP	G	G	T	novel		TCGA-BC-A3KG-01A-11D-A20W-10	TCGA-BC-A3KG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3d178885-f113-42a2-b34d-d564960d9314	685e0c81-2971-413a-9a2e-de27a62de591	.	MTF2	NM_001164392	exon1	c.5+1G>T	.	AATGAGGTGAGAG	.	104.0	53.0	124.0	0.0	.	.	Atlas-SNP
FBLN2	2199	hgsc.bcm.edu	37	3	13612069	13612069	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BC-A3KG-01A-11D-A20W-10	TCGA-BC-A3KG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3d178885-f113-42a2-b34d-d564960d9314	685e0c81-2971-413a-9a2e-de27a62de591	.	FBLN2	NM_001998	exon2	c.G214C	p.D72H	TACTATGACTGCC	.	412.0	255.0	227.0	0.0	.	.	Atlas-SNP
TBC1D9B	23061	hgsc.bcm.edu	37	5	179331760	179331760	+	Silent	SNP	G	G	A	novel		TCGA-BC-A3KG-01A-11D-A20W-10	TCGA-BC-A3KG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3d178885-f113-42a2-b34d-d564960d9314	685e0c81-2971-413a-9a2e-de27a62de591	.	TBC1D9B	NM_198868	exon2	c.C171T	p.A57A	GTAAGGGGCCACG	.	133.0	64.0	187.0	0.0	.	.	Atlas-SNP
PARP14	54625	hgsc.bcm.edu	37	3	122418450	122418450	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A3KG-01A-11D-A20W-10	TCGA-BC-A3KG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3d178885-f113-42a2-b34d-d564960d9314	685e0c81-2971-413a-9a2e-de27a62de591	.	PARP14	NM_017554	exon6	c.G1049A	p.R350H	TGAGGCGTTGTCA	.	141.0	59.0	140.0	0.0	.	.	Atlas-SNP
USP33	23032	hgsc.bcm.edu	37	1	78183652	78183652	+	Silent	SNP	T	T	C	novel		TCGA-BC-A3KG-01A-11D-A20W-10	TCGA-BC-A3KG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3d178885-f113-42a2-b34d-d564960d9314	685e0c81-2971-413a-9a2e-de27a62de591	.	USP33	NM_015017	exon18	c.A1911G	p.L637L	GCCTTCTAGCGGA	.	175.0	84.0	193.0	0.0	.	.	Atlas-SNP
MSX1	4487	hgsc.bcm.edu	37	4	4864457	4864457	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A3KG-01A-11D-A20W-10	TCGA-BC-A3KG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3d178885-f113-42a2-b34d-d564960d9314	685e0c81-2971-413a-9a2e-de27a62de591	.	MSX1	NM_002448	exon2	c.C499T	p.R167C	ACCCTCCGCAAAC	.	88.0	36.0	83.0	0.0	.	.	Atlas-SNP
OR2W1	26692	hgsc.bcm.edu	37	6	29012812	29012812	+	Silent	SNP	A	A	C	novel		TCGA-BC-A3KG-01A-11D-A20W-10	TCGA-BC-A3KG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3d178885-f113-42a2-b34d-d564960d9314	685e0c81-2971-413a-9a2e-de27a62de591	.	OR2W1	NM_030903	exon1	c.T141G	p.L47L	AGATGCAAGAATG	.	408.0	37.0	244.0	0.0	.	.	Atlas-SNP
MFSD5	84975	hgsc.bcm.edu	37	12	53646714	53646714	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A3KG-01A-11D-A20W-10	TCGA-BC-A3KG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3d178885-f113-42a2-b34d-d564960d9314	685e0c81-2971-413a-9a2e-de27a62de591	.	MFSD5	NM_001170790	exon2	c.C416T	p.A139V	GAAGGGCCTGCAG	.	174.0	84.0	149.0	0.0	.	.	Atlas-SNP
NEK6	10783	hgsc.bcm.edu	37	9	127101926	127101926	+	Silent	SNP	G	G	T	novel		TCGA-BC-A3KG-01A-11D-A20W-10	TCGA-BC-A3KG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3d178885-f113-42a2-b34d-d564960d9314	685e0c81-2971-413a-9a2e-de27a62de591	.	NEK6	NM_001166171	exon9	c.G801T	p.L267L	GTCCCTGGGCTGT	.	238.0	10.0	257.0	0.0	.	.	Atlas-SNP
TTC22	55001	hgsc.bcm.edu	37	1	55248004	55248004	+	Silent	SNP	G	G	A	novel		TCGA-BC-A3KG-01A-11D-A20W-10	TCGA-BC-A3KG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3d178885-f113-42a2-b34d-d564960d9314	685e0c81-2971-413a-9a2e-de27a62de591	.	TTC22	NM_001114108	exon6	c.C1167T	p.I389I	CTGGCCGATGTCC	.	68.0	24.0	42.0	0.0	.	.	Atlas-SNP
NELFA	7469	hgsc.bcm.edu	37	4	1993397	1993397	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BC-A3KG-01A-11D-A20W-10	TCGA-BC-A3KG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3d178885-f113-42a2-b34d-d564960d9314	685e0c81-2971-413a-9a2e-de27a62de591	.	.	NM_005663	exon2	c.T289G	p.S97A	GGTCCGAGTCGAG	.	133.0	45.0	121.0	0.0	.	.	Atlas-SNP
GJB4	127534	hgsc.bcm.edu	37	1	35227120	35227120	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BC-A3KG-01A-11D-A20W-10	TCGA-BC-A3KG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3d178885-f113-42a2-b34d-d564960d9314	685e0c81-2971-413a-9a2e-de27a62de591	.	GJB4	NM_153212	exon2	c.C265A	p.L89M	CCCTCACTGCTCG	.	105.0	50.0	122.0	0.0	.	.	Atlas-SNP
SOGA1	140710	hgsc.bcm.edu	37	20	35437068	35437068	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BC-A3KG-01A-11D-A20W-10	TCGA-BC-A3KG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3d178885-f113-42a2-b34d-d564960d9314	685e0c81-2971-413a-9a2e-de27a62de591	.	.	NM_080627	exon8	c.C2662A	p.Q888K	ATTTCTGCTCCAG	.	61.0	25.0	86.0	0.0	.	.	Atlas-SNP
SCN1A	6323	hgsc.bcm.edu	37	2	166854614	166854614	+	Silent	SNP	C	C	T	novel		TCGA-BC-A3KG-01A-11D-A20W-10	TCGA-BC-A3KG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3d178885-f113-42a2-b34d-d564960d9314	685e0c81-2971-413a-9a2e-de27a62de591	.	SCN1A	NM_001165963	exon23	c.G4410A	p.G1470G	GAAGGACCCAAAG	.	228.0	105.0	254.0	0.0	.	.	Atlas-SNP
DST	667	hgsc.bcm.edu	37	6	56497659	56497659	+	Silent	SNP	T	T	C	novel		TCGA-BC-A3KG-01A-11D-A20W-10	TCGA-BC-A3KG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3d178885-f113-42a2-b34d-d564960d9314	685e0c81-2971-413a-9a2e-de27a62de591	.	DST	NM_001723	exon14	c.A2187G	p.A729A	TCTTTCTGCAGAT	.	128.0	47.0	92.0	0.0	.	.	Atlas-SNP
DHX29	54505	hgsc.bcm.edu	37	5	54563641	54563641	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A3KG-01A-11D-A20W-10	TCGA-BC-A3KG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3d178885-f113-42a2-b34d-d564960d9314	685e0c81-2971-413a-9a2e-de27a62de591	.	DHX29	NM_019030	exon22	c.G3304A	p.A1102T	CTGCAGCTAGTGT	.	68.0	32.0	66.0	0.0	.	.	Atlas-SNP
NCF2	4688	hgsc.bcm.edu	37	1	183532683	183532683	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BC-A3KG-01A-11D-A20W-10	TCGA-BC-A3KG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3d178885-f113-42a2-b34d-d564960d9314	685e0c81-2971-413a-9a2e-de27a62de591	.	NCF2	NM_001127651	exon13	c.A1064C	p.K355T	TGCACCTTGAGTG	.	301.0	57.0	135.0	0.0	.	.	Atlas-SNP
AP3B2	8120	hgsc.bcm.edu	37	15	83331627	83331627	+	Silent	SNP	C	C	A	novel		TCGA-BC-A3KG-01A-11D-A20W-10	TCGA-BC-A3KG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3d178885-f113-42a2-b34d-d564960d9314	685e0c81-2971-413a-9a2e-de27a62de591	.	AP3B2	NM_004644	exon22	c.G2595T	p.R865R	AGCTACCCGGTGC	.	70.0	42.0	61.0	0.0	.	.	Atlas-SNP
IZUMO2	126123	hgsc.bcm.edu	37	19	50666320	50666320	+	Silent	SNP	G	G	A	novel		TCGA-BC-A3KG-01A-11D-A20W-10	TCGA-BC-A3KG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3d178885-f113-42a2-b34d-d564960d9314	685e0c81-2971-413a-9a2e-de27a62de591	.	IZUMO2	NM_152358	exon1	c.C132T	p.F44F	CAACTGGAAGCGA	.	178.0	76.0	196.0	0.0	.	.	Atlas-SNP
XYLT1	64131	hgsc.bcm.edu	37	16	17211555	17211555	+	Silent	SNP	G	G	T	novel		TCGA-BC-A3KG-01A-11D-A20W-10	TCGA-BC-A3KG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3d178885-f113-42a2-b34d-d564960d9314	685e0c81-2971-413a-9a2e-de27a62de591	.	XYLT1	NM_022166	exon11	c.C2505A	p.T835T	GAATTTGGTCTCT	.	216.0	107.0	218.0	0.0	.	.	Atlas-SNP
OR14A16	284532	hgsc.bcm.edu	37	1	247978543	247978543	+	Silent	SNP	G	G	T	rs200138400		TCGA-BC-A3KG-01A-11D-A20W-10	TCGA-BC-A3KG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3d178885-f113-42a2-b34d-d564960d9314	685e0c81-2971-413a-9a2e-de27a62de591	.	OR14A16	NM_001001966	exon1	c.C489A	p.S163S	GGATAAGGAGAAG	.	42.0	16.0	8.0	0.0	.	.	Atlas-SNP
CAPN12	147968	hgsc.bcm.edu	37	19	39226821	39226821	+	Silent	SNP	C	C	G	novel		TCGA-BC-A3KG-01A-11D-A20W-10	TCGA-BC-A3KG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3d178885-f113-42a2-b34d-d564960d9314	685e0c81-2971-413a-9a2e-de27a62de591	.	CAPN12	NM_144691	exon12	c.G1512C	p.P504P	GGTGCTCGGCACC	.	31.0	15.0	55.0	0.0	.	.	Atlas-SNP
CEL	1056	hgsc.bcm.edu	37	9	135944115	135944115	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BC-A3KG-01A-11D-A20W-10	TCGA-BC-A3KG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3d178885-f113-42a2-b34d-d564960d9314	685e0c81-2971-413a-9a2e-de27a62de591	.	CEL	NM_001807	exon8	c.G961T	p.A321S	ATCCCCGCTGACC	.	650.0	122.0	834.0	1.0	.	.	Atlas-SNP
NLGN4X	57502	hgsc.bcm.edu	37	X	6069292	6069292	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BC-A3KG-01A-11D-A20W-10	TCGA-BC-A3KG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3d178885-f113-42a2-b34d-d564960d9314	685e0c81-2971-413a-9a2e-de27a62de591	.	NLGN4X	NM_181332	exon2	c.G216T	p.Q72H	TAAGTACTGCTCC	.	304.0	139.0	378.0	0.0	.	.	Atlas-SNP
CSMD1	64478	hgsc.bcm.edu	37	8	3216824	3216824	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BC-A3KG-01A-11D-A20W-10	TCGA-BC-A3KG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3d178885-f113-42a2-b34d-d564960d9314	685e0c81-2971-413a-9a2e-de27a62de591	.	CSMD1	NM_033225	exon21	c.G3154T	p.A1052S	TGAAGGCAGGGAC	.	86.0	72.0	151.0	0.0	.	.	Atlas-SNP
ERMP1	79956	hgsc.bcm.edu	37	9	5832863	5832863	+	Silent	SNP	C	C	T	novel		TCGA-BC-A3KG-01A-11D-A20W-10	TCGA-BC-A3KG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3d178885-f113-42a2-b34d-d564960d9314	685e0c81-2971-413a-9a2e-de27a62de591	.	ERMP1	NM_024896	exon1	c.G165A	p.G55G	GCTACCCCCGGGG	.	5.0	5.0	0.0	0.0	.	.	Atlas-SNP
ITIH5	80760	hgsc.bcm.edu	37	10	7608182	7608182	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BC-A3KG-01A-11D-A20W-10	TCGA-BC-A3KG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3d178885-f113-42a2-b34d-d564960d9314	685e0c81-2971-413a-9a2e-de27a62de591	.	ITIH5	NM_030569	exon13	c.G2338T	p.V780L	CCACCACCACACT	.	158.0	64.0	198.0	0.0	.	.	Atlas-SNP
SLCO1B7	338821	hgsc.bcm.edu	37	12	21207385	21207385	+	Splice_Site	SNP	G	G	T	novel		TCGA-BC-A3KG-01A-11D-A20W-10	TCGA-BC-A3KG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3d178885-f113-42a2-b34d-d564960d9314	685e0c81-2971-413a-9a2e-de27a62de591	.	.	NM_001009562	exon10	c.1357-1G>T	.	TTTTTAGGTGTTT	.	182.0	30.0	124.0	0.0	.	.	Atlas-SNP
GPR84	53831	hgsc.bcm.edu	37	12	54756956	54756956	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A3KG-01A-11D-A20W-10	TCGA-BC-A3KG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3d178885-f113-42a2-b34d-d564960d9314	685e0c81-2971-413a-9a2e-de27a62de591	.	GPR84	NM_020370	exon2	c.T680C	p.V227A	CTGGCCACATGGT	.	97.0	41.0	95.0	0.0	.	.	Atlas-SNP
SLCO1B7	338821	hgsc.bcm.edu	37	12	21207384	21207384	+	Splice_Site	SNP	A	A	C	novel		TCGA-BC-A3KG-01A-11D-A20W-10	TCGA-BC-A3KG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3d178885-f113-42a2-b34d-d564960d9314	685e0c81-2971-413a-9a2e-de27a62de591	.	.	NM_001009562	exon10	c.1357-2A>C	.	ATTTTTAGGTGTT	.	179.0	28.0	122.0	0.0	.	.	Atlas-SNP
TBC1D9B	23061	hgsc.bcm.edu	37	5	179331759	179331759	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A3KG-01A-11D-A20W-10	TCGA-BC-A3KG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3d178885-f113-42a2-b34d-d564960d9314	685e0c81-2971-413a-9a2e-de27a62de591	.	TBC1D9B	NM_198868	exon2	c.C172T	p.P58S	GGTAAGGGGCCAC	.	133.0	64.0	182.0	0.0	.	.	Atlas-SNP
TCEANC	170082	hgsc.bcm.edu	37	X	13681572	13681572	+	Silent	SNP	T	T	A	novel		TCGA-BC-A3KG-01A-11D-A20W-10	TCGA-BC-A3KG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3d178885-f113-42a2-b34d-d564960d9314	685e0c81-2971-413a-9a2e-de27a62de591	.	TCEANC	NM_152634	exon4	c.T1035A	p.L345L	AACACTTTTCCTT	.	144.0	72.0	156.0	0.0	.	.	Atlas-SNP
C15orf43	145645	hgsc.bcm.edu	37	15	45250636	45250636	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A3KG-01A-11D-A20W-10	TCGA-BC-A3KG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3d178885-f113-42a2-b34d-d564960d9314	685e0c81-2971-413a-9a2e-de27a62de591	.	C15orf43	NM_152448	exon3	c.C212T	p.A71V	TCTCTGCGGTAGC	.	141.0	73.0	117.0	0.0	.	.	Atlas-SNP
RPS6KA3	6197	hgsc.bcm.edu	37	X	20194413	20194413	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BC-A3KG-01A-11D-A20W-10	TCGA-BC-A3KG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3d178885-f113-42a2-b34d-d564960d9314	685e0c81-2971-413a-9a2e-de27a62de591	.	RPS6KA3	NM_004586	exon13	c.G1057T	p.D353Y	ATGTATCTTCAGG	.	353.0	146.0	314.0	0.0	.	.	Atlas-SNP
CACNA1B	774	hgsc.bcm.edu	37	9	140878654	140878654	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BC-A3KG-01A-11D-A20W-10	TCGA-BC-A3KG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3d178885-f113-42a2-b34d-d564960d9314	685e0c81-2971-413a-9a2e-de27a62de591	.	CACNA1B	NM_001243812	exon13	c.T1721A	p.I574N	TTGGGATCAGTGT	.	229.0	102.0	282.0	1.0	.	.	Atlas-SNP
