Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	Algorithm
GPAM	57678	hgsc.bcm.edu	37	10	113920573	113920585	+	Frame_Shift_Del	DEL	GACTTCCTCTTTC	GACTTCCTCTTTC	-	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	GACTTCCTCTTTC	GACTTCCTCTTTC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	GPAM	NM_001244949	exon16	c.1537_1549del	p.513_517del	.	.	96.0	12.0	115.0	0.0	.	.	Atlas-Indel
GMEB2	26205	hgsc.bcm.edu	37	20	62221981	62221981	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	GMEB2	NM_012384	exon10	c.1055delT	p.L352fs	.	.	147.0	10.0	71.0	0.0	.	.	Atlas-Indel
ZFR	51663	hgsc.bcm.edu	37	5	32400266	32400266	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	ZFR	NM_016107	exon9	c.1560delA	p.I520fs	.	.	163.0	10.0	113.0	0.0	.	.	Atlas-Indel
KIAA0196	9897	hgsc.bcm.edu	37	8	126059515	126059515	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	KIAA0196	NM_014846	exon20	c.2439delT	p.P813fs	.	.	141.0	10.0	123.0	0.0	.	.	Atlas-Indel
MED1	5469	hgsc.bcm.edu	37	17	37565247	37565247	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	MED1	NM_004774	exon17	c.3228delG	p.K1076fs	.	.	117.0	10.0	110.0	0.0	.	.	Atlas-Indel
ZFP36	7538	hgsc.bcm.edu	37	19	39899237	39899239	+	In_Frame_Del	DEL	CTC	CTC	-	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	CTC	CTC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	ZFP36	NM_003407	exon2	c.896_898del	p.299_300del	.	.	93.0	21.0	84.0	0.0	.	.	Atlas-Indel
FGD6	55785	hgsc.bcm.edu	37	12	95603722	95603722	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	FGD6	NM_018351	exon2	c.1339delA	p.I447X	.	.	163.0	11.0	103.0	0.0	.	.	Atlas-Indel
REXO4	57109	hgsc.bcm.edu	37	9	136277557	136277557	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	REXO4	NM_020385	exon4	c.773delA	p.E258fs	.	.	152.0	10.0	113.0	0.0	.	.	Atlas-Indel
DCAF4L2	138009	hgsc.bcm.edu	37	8	88885079	88885079	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	DCAF4L2	NM_152418	exon1	c.1122delC	p.G374fs	.	.	172.0	13.0	75.0	0.0	.	.	Atlas-Indel
MINK1	50488	hgsc.bcm.edu	37	17	4791017	4791017	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	MINK1	NM_170663	exon12	c.1161delC	p.I387fs	.	.	145.0	11.0	95.0	0.0	.	.	Atlas-Indel
USP54	159195	hgsc.bcm.edu	37	10	75264616	75264616	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	USP54	NM_152586	exon20	c.4304delA	p.H1435fs	.	.	166.0	10.0	130.0	0.0	.	.	Atlas-Indel
EYA1	2138	hgsc.bcm.edu	37	8	72267072	72267072	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	EYA1	NM_172059	exon2	c.70delA	p.K24fs	.	.	177.0	11.0	127.0	0.0	.	.	Atlas-Indel
EFNB2	1948	hgsc.bcm.edu	37	13	107148141	107148141	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	EFNB2	NM_004093	exon3	c.455delT	p.V152fs	.	.	120.0	10.0	105.0	0.0	.	.	Atlas-Indel
PPP1R15B	84919	hgsc.bcm.edu	37	1	204378837	204378837	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	PPP1R15B	NM_032833	exon1	c.1704delT	p.P568fs	.	.	163.0	10.0	115.0	0.0	.	.	Atlas-Indel
PDZD2	23037	hgsc.bcm.edu	37	5	32090198	32090198	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	PDZD2	NM_178140	exon19	c.6643delA	p.T2215fs	.	.	166.0	10.0	91.0	0.0	.	.	Atlas-Indel
VSTM4	196740	hgsc.bcm.edu	37	10	50315774	50315774	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	VSTM4,NS,carcinoma,-1	VSTM4	NM_144984	exon2	c.323delC	p.A108fs	.	.	145.0	10.0	111.0	0.0	.	.	Atlas-Indel
PITPNA	5306	hgsc.bcm.edu	37	17	1444911	1444911	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	PITPNA	NM_006224	exon6	c.322delC	p.L108X	.	.	177.0	11.0	146.0	0.0	.	.	Atlas-Indel
PSMB10	5699	hgsc.bcm.edu	37	16	67970637	67970637	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	PSMB10	NM_002801	exon1	c.17delT	p.L6fs	.	.	156.0	10.0	121.0	0.0	.	.	Atlas-Indel
DOCK9	23348	hgsc.bcm.edu	37	13	99567709	99567709	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	DOCK9	NM_001130049	exon8	c.770delG	p.S257fs	.	.	148.0	10.0	118.0	0.0	.	.	Atlas-Indel
SIL1	64374	hgsc.bcm.edu	37	5	138362514	138362514	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	SIL1	NM_001037633	exon7	c.622delG	p.D208fs	.	.	194.0	13.0	108.0	0.0	.	.	Atlas-Indel
FOXK2	3607	hgsc.bcm.edu	37	17	80544026	80544026	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	FOXK2	NM_004514	exon7	c.1525delG	p.A509fs	.	.	166.0	10.0	81.0	0.0	.	.	Atlas-Indel
TNKS1BP1	85456	hgsc.bcm.edu	37	11	57081166	57081166	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	TNKS1BP1	NM_033396	exon5	c.997delG	p.A333fs	.	.	208.0	13.0	194.0	0.0	.	.	Atlas-Indel
TENM2	57451	hgsc.bcm.edu	37	5	167675302	167675302	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	.	NM_001122679	exon27	c.7330delG	p.A2444fs	.	.	121.0	10.0	82.0	0.0	.	.	Atlas-Indel
POGLUT1	56983	hgsc.bcm.edu	37	3	119187934	119187934	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	POGLUT1	NM_152305	exon1	c.65delA	p.Q22fs	.	.	178.0	11.0	108.0	0.0	.	.	Atlas-Indel
ANXA8L2	244	hgsc.bcm.edu	37	10	47756662	47756662	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	ANXA8L2	NM_001630	exon8	c.575delA	p.N192fs	.	.	161.0	10.0	136.0	0.0	.	.	Atlas-Indel
PRKRA	8575	hgsc.bcm.edu	37	2	179300978	179300978	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	PRKRA	NM_003690	exon7	c.679delA	p.N227fs	.	.	130.0	17.0	149.0	0.0	.	.	Atlas-Indel
HCFC1	3054	hgsc.bcm.edu	37	X	153217070	153217070	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	HCFC1	NM_005334	exon21	c.5350delG	p.V1784fs	.	.	166.0	10.0	110.0	0.0	.	.	Atlas-Indel
STAG2	10735	hgsc.bcm.edu	37	X	123224569	123224569	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	STAG2	NM_001042749	exon31	c.3421delG	p.V1141fs	.	.	129.0	10.0	120.0	0.0	.	.	Atlas-Indel
KCNA3	3738	hgsc.bcm.edu	37	1	111216834	111216834	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	KCNA3	NM_002232	exon1	c.599delA	p.D200fs	.	.	109.0	55.0	69.0	0.0	.	.	Atlas-Indel,Pindel
TRIM33	51592	hgsc.bcm.edu	37	1	114973529	114973530	+	Frame_Shift_Ins	INS	-	-	CAAC	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	TRIM33	NM_033020	exon6	c.1046_1047insGTTG	p.K349_E350delinsSX	.	.	148.0	11.0	172.0	0.0	.	.	Atlas-Indel
GPAM	57678	hgsc.bcm.edu	37	10	113920588	113920593	+	In_Frame_Del	DEL	CACAAA	CACAAA	-	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	CACAAA	CACAAA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	GPAM	NM_001244949	exon16	c.1529_1534del	p.510_512del	.	.	84.0	12.0	91.0	0.0	.	.	Atlas-Indel
HRNR	388697	hgsc.bcm.edu	37	1	152189562	152189562	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	HRNR	NM_001009931	exon3	c.4544delG	p.S1515fs	.	.	16.0	14.0	6.0	0.0	.	.	Atlas-Indel
OR8G5	219865	hgsc.bcm.edu	37	11	124134838	124134838	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	.	NM_001005198	exon1	c.115delG	p.E39fs	.	.	179.0	11.0	164.0	0.0	.	.	Atlas-Indel
FCGBP	8857	hgsc.bcm.edu	37	19	40433636	40433636	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	FCGBP	NM_003890	exon2	c.634delT	p.S212fs	.	.	154.0	10.0	159.0	0.0	.	.	Atlas-Indel
CHST3	9469	hgsc.bcm.edu	37	10	73767842	73767842	+	Silent	SNP	C	C	T	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	CHST3	NM_004273	exon3	c.C1053T	p.S351S	CCTGTCCGCGGAG	.	39.0	19.0	28.0	0.0	.	.	Atlas-SNP
ATP12A	479	hgsc.bcm.edu	37	13	25274939	25274939	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	ATP12A,NS,carcinoma,+1	ATP12A	NM_001185085	exon13	c.A1778G	p.D593G	CATTTGACATAGA	.	140.0	60.0	134.0	0.0	.	.	Atlas-SNP
ZFP28	140612	hgsc.bcm.edu	37	19	57066068	57066068	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	ZFP28	NM_020828	exon8	c.C1914G	p.I638M	GAGAATCCATACT	.	109.0	31.0	77.0	0.0	.	.	Atlas-SNP
ZNF24	7572	hgsc.bcm.edu	37	18	32920511	32920511	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	ZNF24	NM_006965	exon2	c.A104G	p.E35G	CCCTCTTCGCCAT	.	60.0	22.0	45.0	0.0	.	.	Atlas-SNP
SYT9	143425	hgsc.bcm.edu	37	11	7324549	7324549	+	Missense_Mutation	SNP	C	C	T	rs200034628		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	SYT9	NM_175733	exon2	c.C425T	p.T142M	CCCAGACGGGGAT	.	65.0	23.0	69.0	0.0	C|0.999;T|0.000	.	Atlas-SNP
TPCN2	219931	hgsc.bcm.edu	37	11	68835002	68835002	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	TPCN2	NM_139075	exon8	c.C758G	p.T253S	GGCTGACCTACTT	.	56.0	11.0	46.0	0.0	.	.	Atlas-SNP
CACNG4	27092	hgsc.bcm.edu	37	17	65026831	65026831	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	CACNG4	NM_014405	exon4	c.G695A	p.R232K	ATGCCAGGATGCC	.	173.0	68.0	149.0	0.0	.	.	Atlas-SNP
COL11A2	1302	hgsc.bcm.edu	37	6	33141808	33141808	+	Silent	SNP	G	G	T	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	COL11A2	NM_080680	exon33	c.C2509A	p.R837R	CTCCCCGAGGCCC	.	187.0	67.0	158.0	0.0	.	.	Atlas-SNP
SYCE1L	100130958	hgsc.bcm.edu	37	16	77245136	77245136	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	.	NM_001129979	exon7	c.A386G	p.D129G	TGGAGGATCTGAT	.	211.0	84.0	189.0	0.0	.	.	Atlas-SNP
TIGD7	91151	hgsc.bcm.edu	37	16	3349414	3349414	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	TIGD7	NM_033208	exon2	c.A1201G	p.N401D	GAAGATTTTCCCA	.	215.0	81.0	240.0	0.0	.	.	Atlas-SNP
OR5F1	338674	hgsc.bcm.edu	37	11	55761365	55761365	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	OR5F1	NM_003697	exon1	c.C737T	p.T246I	ATGGCTGTCAGGT	.	84.0	34.0	92.0	0.0	.	.	Atlas-SNP
RLTPR	146206	hgsc.bcm.edu	37	16	67683061	67683061	+	Silent	SNP	C	C	T	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	RLTPR	NM_001013838	exon18	c.C1674T	p.F558F	GAACTTCAACGTC	.	143.0	50.0	132.0	0.0	.	.	Atlas-SNP
IQGAP3	128239	hgsc.bcm.edu	37	1	156496391	156496391	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	IQGAP3	NM_178229	exon38	c.G4783T	p.D1595Y	GGAGATCCTAGGA	.	78.0	21.0	69.0	0.0	.	.	Atlas-SNP
ULK2	9706	hgsc.bcm.edu	37	17	19729494	19729494	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	ULK2	NM_001142610	exon11	c.T793G	p.F265V	TAAAAAATGCTTC	.	238.0	11.0	237.0	0.0	.	.	Atlas-SNP
DNAJC2	27000	hgsc.bcm.edu	37	7	102957429	102957429	+	Silent	SNP	C	C	T	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	DNAJC2	NM_014377	exon13	c.G1275A	p.E425E	CTCTTTCTCTTTT	.	232.0	89.0	280.0	1.0	.	.	Atlas-SNP
RBMXL2	27288	hgsc.bcm.edu	37	11	7111267	7111267	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	RBMXL2	NM_014469	exon1	c.G916T	p.G306C	GGAGGAGGCCGCT	.	109.0	48.0	86.0	0.0	.	.	Atlas-SNP
SMPD1	6609	hgsc.bcm.edu	37	11	6412065	6412065	+	Silent	SNP	G	G	A	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	SMPD1	NM_000543	exon1	c.G237A	p.R79R	GCCCCGGCTCCGA	.	89.0	23.0	88.0	0.0	.	.	Atlas-SNP
THAP1	55145	hgsc.bcm.edu	37	8	42693397	42693397	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	THAP1	NM_018105	exon3	c.G350T	p.G117V	AGTAATCCAATAG	.	124.0	66.0	135.0	0.0	.	.	Atlas-SNP
KRTAP26-1	388818	hgsc.bcm.edu	37	21	31691918	31691918	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	KRTAP26-1	NM_203405	exon1	c.C436A	p.Q146K	AGAATTGGGGGCG	.	140.0	74.0	164.0	0.0	.	.	Atlas-SNP
XIRP2	129446	hgsc.bcm.edu	37	2	168104144	168104144	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	XIRP2	NM_152381	exon9	c.G6242A	p.R2081K	TGAGCAGACAATT	.	158.0	71.0	155.0	0.0	.	.	Atlas-SNP
TLL1	7092	hgsc.bcm.edu	37	4	167020635	167020635	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	TLL1	NM_012464	exon20	c.C2863G	p.L955V	GATGGTCTTGATT	.	290.0	104.0	266.0	0.0	.	.	Atlas-SNP
MTF1	4520	hgsc.bcm.edu	37	1	38281195	38281195	+	Silent	SNP	G	G	A	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	MTF1	NM_005955	exon11	c.C1875T	p.I625I	TTTGATGATGATC	.	235.0	113.0	173.0	0.0	.	.	Atlas-SNP
NDST4	64579	hgsc.bcm.edu	37	4	115858629	115858629	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	NDST4	NM_022569	exon5	c.G1252T	p.A418S	CCACAGCATAGCC	.	267.0	96.0	254.0	0.0	.	.	Atlas-SNP
ZNF24	7572	hgsc.bcm.edu	37	18	32920512	32920512	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	ZNF24	NM_006965	exon2	c.G103T	p.E35X	CCTCTTCGCCATC	.	59.0	21.0	45.0	0.0	.	.	Atlas-SNP
FAM13A	10144	hgsc.bcm.edu	37	4	89652508	89652508	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	FAM13A	NM_014883	exon23	c.T2915G	p.F972C	TCTTCAAAATCCC	.	25.0	8.0	39.0	0.0	.	.	Atlas-SNP
FSBP	100861412	hgsc.bcm.edu	37	8	95449096	95449096	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	.	NM_001256141	exon1	c.A1G	p.M1V	CTACCATTGTTCT	.	189.0	50.0	143.0	0.0	.	.	Atlas-SNP
COMP	1311	hgsc.bcm.edu	37	19	18899995	18899995	+	Silent	SNP	G	G	A	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	COMP	NM_000095	exon5	c.C502T	p.L168L	AAGCCAGCCCCAC	.	81.0	31.0	86.0	0.0	.	.	Atlas-SNP
ACADVL	37	hgsc.bcm.edu	37	17	7123814	7123814	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	ACADVL	NM_001270447	exon4	c.C239A	p.S80Y	ACCCCTCTGACGC	.	101.0	36.0	79.0	0.0	.	.	Atlas-SNP
MYPOP	339344	hgsc.bcm.edu	37	19	46393962	46393962	+	Silent	SNP	G	G	A	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	MYPOP	NM_001012643	exon3	c.C1119T	p.L373L	CGGAGGGAGCGGG	.	75.0	25.0	64.0	0.0	.	.	Atlas-SNP
FAM8A1	51439	hgsc.bcm.edu	37	6	17601073	17601073	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	FAM8A1	NM_016255	exon1	c.C433T	p.Q145X	AGCCCCCAGCCCT	.	70.0	28.0	44.0	0.0	.	.	Atlas-SNP
RAB32	10981	hgsc.bcm.edu	37	6	146875606	146875606	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	RAB32	NM_006834	exon3	c.A543G	p.I181M	AAACATAGAGGAA	.	62.0	37.0	86.0	0.0	.	.	Atlas-SNP
FAM47C	442444	hgsc.bcm.edu	37	X	37026590	37026590	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	FAM47C	NM_001013736	exon1	c.G107A	p.R36K	AGCACAGGCGCCT	.	312.0	218.0	282.0	0.0	.	.	Atlas-SNP
ITGA10	8515	hgsc.bcm.edu	37	1	145534216	145534216	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	ITGA10	NM_003637	exon14	c.A1721G	p.E574G	CTCTGGAAGATGG	.	191.0	50.0	154.0	0.0	.	.	Atlas-SNP
RSPH6A	81492	hgsc.bcm.edu	37	19	46305378	46305378	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	RSPH6A	NM_030785	exon4	c.G1798T	p.E600X	CCTTACCTGCATC	.	126.0	45.0	107.0	0.0	.	.	Atlas-SNP
DNAH17	8632	hgsc.bcm.edu	37	17	76472713	76472713	+	Nonsense_Mutation	SNP	C	C	A	rs116230343	byfrequency;alternate_allele	TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	DNAH17	NM_173628	exon52	c.G8095T	p.E2699X	CTTTTTCGTCAAC	.	513.0	297.0	279.0	0.0	C|0.986;T|0.014	.	Atlas-SNP
PAQR7	164091	hgsc.bcm.edu	37	1	26189417	26189417	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	PAQR7	NM_178422	exon2	c.A914C	p.E305A	AGAGGCTCATAGA	.	246.0	150.0	304.0	0.0	.	.	Atlas-SNP
CACNA1B	774	hgsc.bcm.edu	37	9	140773613	140773613	+	Splice_Site	SNP	T	T	A	rs201604190		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	CACNA1B,NS,carcinoma,0	CACNA1B	NM_001243812	exon2	c.390+2T>A	.	GGCTGGTGAGTGC	.	77.0	7.0	51.0	1.0	.	.	Atlas-SNP
OR5T2	219464	hgsc.bcm.edu	37	11	56000212	56000212	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	OR5T2	NM_001004746	exon1	c.A450T	p.E150D	AAAGCATTCTGTG	.	208.0	77.0	177.0	0.0	.	.	Atlas-SNP
LRP12	29967	hgsc.bcm.edu	37	8	105503084	105503084	+	Silent	SNP	G	G	A	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	LRP12	NM_013437	exon7	c.C2397T	p.A799A	ATCTGAGGCAAGA	.	159.0	37.0	131.0	0.0	.	.	Atlas-SNP
DDX46	9879	hgsc.bcm.edu	37	5	134121198	134121198	+	Silent	SNP	T	T	A	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	DDX46	NM_014829	exon11	c.T1386A	p.T462T	GATTACTAAAGAG	.	167.0	34.0	156.0	0.0	.	.	Atlas-SNP
EFCAB6	64800	hgsc.bcm.edu	37	22	43936088	43936088	+	Silent	SNP	G	G	A	rs144783076	byfrequency	TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	EFCAB6	NM_022785	exon28	c.C3798T	p.D1266D	CGAGACGTCAGGG	.	145.0	53.0	93.0	0.0	G|1.000;A|0.000	.	Atlas-SNP
LRP8	7804	hgsc.bcm.edu	37	1	53716471	53716471	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	LRP8	NM_004631	exon17	c.C2567A	p.T856N	CTTTTGGTGTTCT	.	206.0	111.0	199.0	0.0	.	.	Atlas-SNP
GOLGA2	2801	hgsc.bcm.edu	37	9	131022366	131022366	+	Silent	SNP	G	G	A	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	GOLGA2	NM_004486	exon18	c.C1780T	p.L594L	CCTTCAGCTCGCT	.	40.0	8.0	33.0	0.0	.	.	Atlas-SNP
KANK1	23189	hgsc.bcm.edu	37	9	713074	713074	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	KANK1	NM_001256876	exon7	c.T2308C	p.Y770H	GACAACTATCTGG	.	106.0	40.0	109.0	0.0	.	.	Atlas-SNP
LAMC1	3915	hgsc.bcm.edu	37	1	183095398	183095398	+	Splice_Site	SNP	G	G	T	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	LAMC1	NM_002293	exon16	c.2944+1G>T	.	GCAAACGTAAGGG	.	284.0	140.0	140.0	0.0	.	.	Atlas-SNP
PRUNE2	158471	hgsc.bcm.edu	37	9	79322807	79322807	+	Silent	SNP	C	C	T	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	PRUNE2	NM_015225	exon8	c.G4383A	p.K1461K	AAGATCCTTTTCA	.	160.0	45.0	141.0	0.0	.	.	Atlas-SNP
TNRC6B	23112	hgsc.bcm.edu	37	22	40708594	40708594	+	Silent	SNP	G	G	T	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	TNRC6B	NM_001162501	exon18	c.G4521T	p.G1507G	GCTGGGGGGTACA	.	116.0	46.0	123.0	0.0	.	.	Atlas-SNP
WDR87	83889	hgsc.bcm.edu	37	19	38378513	38378513	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	.	NM_031951	exon6	c.A5681C	p.K1894T	GTCAGCTTCTCCT	.	208.0	84.0	206.0	0.0	.	.	Atlas-SNP
GPR125	166647	hgsc.bcm.edu	37	4	22425934	22425934	+	Silent	SNP	C	C	T	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	GPR125	NM_145290	exon11	c.G1485A	p.L495L	ATCAGCCAACATG	.	213.0	88.0	239.0	0.0	.	.	Atlas-SNP
TNRC6A	27327	hgsc.bcm.edu	37	16	24815534	24815534	+	Missense_Mutation	SNP	A	A	G	rs146427035	byfrequency	TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	TNRC6A	NM_014494	exon12	c.A3731G	p.H1244R	ATAAACATAGCCT	.	52.0	22.0	89.0	0.0	A|0.995;G|0.005	.	Atlas-SNP
PPAPDC3	84814	hgsc.bcm.edu	37	9	134183331	134183331	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	PPAPDC3	NM_032728	exon2	c.C473T	p.T158M	TCATGACGGTGGC	.	31.0	9.0	11.0	0.0	.	.	Atlas-SNP
MED10	84246	hgsc.bcm.edu	37	5	6374436	6374436	+	Splice_Site	SNP	C	C	T	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	MED10	NM_032286	exon4	c.309+1G>A	.	GTCTTACCTTCAT	.	264.0	58.0	186.0	0.0	.	.	Atlas-SNP
UNC13C	440279	hgsc.bcm.edu	37	15	54590036	54590036	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	UNC13C	NM_001080534	exon10	c.C4016A	p.S1339Y	CTGTATCTGGGGC	.	304.0	104.0	340.0	0.0	.	.	Atlas-SNP
PYHIN1	149628	hgsc.bcm.edu	37	1	158908887	158908887	+	Silent	SNP	T	T	A	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	PYHIN1	NM_152501	exon4	c.T429A	p.S143S	ACCATCTGAAGAA	.	149.0	50.0	130.0	0.0	.	.	Atlas-SNP
FREM2	341640	hgsc.bcm.edu	37	13	39343836	39343836	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	FREM2	NM_207361	exon4	c.T5532C	p.D1844D	GAGTGATGGGGAG	.	302.0	115.0	257.0	0.0	.	.	Atlas-SNP
CYP11B2	1585	hgsc.bcm.edu	37	8	143996601	143996601	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	CYP11B2	NM_000498	exon3	c.G456C	p.K152N	CACGGCCTTGGGC	.	294.0	23.0	194.0	0.0	.	.	Atlas-SNP
ZNF322	79692	hgsc.bcm.edu	37	6	26638586	26638586	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	.	NM_001242797	exon5	c.A196G	p.T66A	CCCCAGTATGGGT	.	397.0	92.0	393.0	0.0	.	.	Atlas-SNP
ZNF395	55893	hgsc.bcm.edu	37	8	28210089	28210089	+	Splice_Site	SNP	C	C	T	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	ZNF395	NM_018660	exon7	c.920+1G>A	.	CACATACCCCAGA	.	106.0	31.0	51.0	0.0	.	.	Atlas-SNP
FLG	2312	hgsc.bcm.edu	37	1	152277969	152277969	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	FLG	NM_002016	exon3	c.T9393G	p.D3131E	AGAGCTATCTACC	.	443.0	111.0	342.0	0.0	.	.	Atlas-SNP
CELF6	60677	hgsc.bcm.edu	37	15	72581260	72581260	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	CELF6	NM_001172684	exon9	c.G1042T	p.G348C	CCACGCCGGGGCT	.	204.0	93.0	189.0	0.0	.	.	Atlas-SNP
CSMD3	114788	hgsc.bcm.edu	37	8	113585826	113585826	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	CSMD3	NM_198123	exon24	c.C3946A	p.R1316S	GTCCGCGCATAGA	.	131.0	34.0	116.0	0.0	.	.	Atlas-SNP
SPTBN1	6711	hgsc.bcm.edu	37	2	54850714	54850714	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	SPTBN1	NM_003128	exon10	c.T1163G	p.L388R	GGAAGCTCATCTC	.	126.0	56.0	137.0	0.0	.	.	Atlas-SNP
RGS7	6000	hgsc.bcm.edu	37	1	240978079	240978079	+	Splice_Site	SNP	T	T	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	RGS7	NM_002924	exon13	c.784-2A>G	.	TTTATCTGAAAAG	.	85.0	24.0	47.0	0.0	.	.	Atlas-SNP
PLEKHG1	57480	hgsc.bcm.edu	37	6	151144808	151144808	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	PLEKHG1	NM_001029884	exon15	c.A1466G	p.Q489R	ACATCCAAAAGGT	.	31.0	16.0	54.0	0.0	.	.	Atlas-SNP
ABCA13	154664	hgsc.bcm.edu	37	7	48318670	48318670	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	ABCA13	NM_152701	exon18	c.C7879A	p.Q2627K	ATGAACCAATCTA	.	54.0	20.0	63.0	0.0	.	.	Atlas-SNP
APLP2	334	hgsc.bcm.edu	37	11	130011950	130011950	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	APLP2	NM_001642	exon17	c.T2171G	p.I724S	GCACCATCAGCCA	.	111.0	33.0	91.0	0.0	.	.	Atlas-SNP
TBX22	50945	hgsc.bcm.edu	37	X	79282219	79282219	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	TBX22	NM_016954	exon5	c.T650C	p.M217T	AATCCATGCATAA	.	63.0	44.0	71.0	0.0	.	.	Atlas-SNP
EDN3	1908	hgsc.bcm.edu	37	20	57896179	57896179	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	EDN3	NM_207034	exon3	c.G473T	p.R158L	ACTTGCGCTGCGC	.	187.0	66.0	127.0	0.0	.	.	Atlas-SNP
SCAF11	9169	hgsc.bcm.edu	37	12	46357973	46357973	+	Splice_Site	SNP	T	T	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	SCAF11	.	.	.	.	GTTTCCTATAAGA	.	23.0	13.0	19.0	0.0	.	.	Atlas-SNP
PIK3CA	5290	hgsc.bcm.edu	37	3	178952085	178952085	+	Missense_Mutation	SNP	A	A	G	rs121913279	bycluster	TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	PIK3CA,bladder,carcinoma,0	PIK3CA	NM_006218	exon21	c.A3140G	p.H1047R	ATGCACATCATGG	.	126.0	47.0	122.0	0.0	.	.	Atlas-SNP
DOCK9	23348	hgsc.bcm.edu	37	13	99515318	99515318	+	Silent	SNP	C	C	T	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	DOCK9	NM_001130049	exon32	c.G3537A	p.R1179R	ATTGATCCGCTGG	.	117.0	45.0	132.0	0.0	.	.	Atlas-SNP
FANCF	2188	hgsc.bcm.edu	37	11	22646565	22646565	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	FANCF	NM_022725	exon1	c.T792C	p.T264T	GCGGCTAGTCACT	.	108.0	33.0	67.0	0.0	.	.	Atlas-SNP
PACSIN2	11252	hgsc.bcm.edu	37	22	43284655	43284655	+	Silent	SNP	A	A	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	PACSIN2	NM_007229	exon5	c.T603G	p.V201V	CTTAAGAACATCT	.	235.0	103.0	201.0	0.0	.	.	Atlas-SNP
ABI3BP	25890	hgsc.bcm.edu	37	3	100569517	100569517	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	ABI3BP	NM_015429	exon14	c.A1287G	p.P429P	TGCCCTTGGCTGT	.	77.0	5.0	88.0	0.0	.	.	Atlas-SNP
VAMP2	6844	hgsc.bcm.edu	37	17	8064968	8064968	+	Silent	SNP	G	G	A	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	VAMP2	NM_014232	exon3	c.C240T	p.S80S	GGCTGCGCTTGTT	.	130.0	13.0	138.0	0.0	.	.	Atlas-SNP
TTC17	55761	hgsc.bcm.edu	37	11	43411338	43411338	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	TTC17	NM_018259	exon3	c.G386C	p.G129A	ATGATGGCACATA	.	198.0	57.0	215.0	0.0	.	.	Atlas-SNP
FHOD3	80206	hgsc.bcm.edu	37	18	34182680	34182680	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	FHOD3	NM_025135	exon8	c.A762G	p.K254K	GGAAAAAGATGGA	.	244.0	22.0	236.0	0.0	.	.	Atlas-SNP
IL7R	3575	hgsc.bcm.edu	37	5	35867499	35867499	+	Missense_Mutation	SNP	A	A	G	rs199742437	alternate_allele	TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	IL7R	NM_002185	exon3	c.A313G	p.S105G	GGAAAGAGCAATA	.	100.0	26.0	70.0	0.0	.	.	Atlas-SNP
RAC2	5880	hgsc.bcm.edu	37	22	37622734	37622734	+	Silent	SNP	C	C	T	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	RAC2	NM_002872	exon6	c.G558A	p.K186K	GGCGCGCTTCTGC	.	70.0	24.0	55.0	0.0	.	.	Atlas-SNP
IL18	3606	hgsc.bcm.edu	37	11	112020884	112020884	+	Nonsense_Mutation	SNP	G	G	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	IL18	NM_001562	exon4	c.C137G	p.S46X	ATGACTGATAATT	.	99.0	36.0	94.0	0.0	.	.	Atlas-SNP
THSD7A	221981	hgsc.bcm.edu	37	7	11446083	11446083	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	THSD7A	NM_015204	exon21	c.G4081C	p.G1361R	TGGTCCCTTCTCC	.	242.0	84.0	193.0	0.0	.	.	Atlas-SNP
PCDHA11	56138	hgsc.bcm.edu	37	5	140249054	140249054	+	Silent	SNP	G	G	A	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	PCDHA11	NM_018902	exon1	c.G366A	p.E122E	CGTGGAGGTGAAG	.	150.0	78.0	157.0	0.0	.	.	Atlas-SNP
SLC22A20	440044	hgsc.bcm.edu	37	11	64981537	64981537	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	SLC22A20	NM_001004326	exon1	c.C194T	p.S65L	ACGACTCGGGGGC	.	63.0	20.0	65.0	0.0	.	.	Atlas-SNP
SLITRK4	139065	hgsc.bcm.edu	37	X	142717685	142717685	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	SLITRK4	NM_001184750	exon2	c.A1240G	p.T414A	TCACTGTAATTTG	.	109.0	81.0	117.0	0.0	.	.	Atlas-SNP
CNTROB	116840	hgsc.bcm.edu	37	17	7851016	7851016	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	CNTROB	NM_001037144	exon14	c.G2121C	p.E707D	GCTGGAGGGCCTC	.	121.0	71.0	105.0	0.0	.	.	Atlas-SNP
RNF139	11236	hgsc.bcm.edu	37	8	125498418	125498418	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	RNF139	NM_007218	exon2	c.G528T	p.E176D	CAGAGAGACTTTA	.	192.0	104.0	120.0	0.0	.	.	Atlas-SNP
TEX14	56155	hgsc.bcm.edu	37	17	56692692	56692692	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	TEX14	NM_001201457	exon8	c.G800A	p.G267E	CTGCTCCCATTCC	.	120.0	5.0	92.0	0.0	.	.	Atlas-SNP
KIAA0100	9703	hgsc.bcm.edu	37	17	26961916	26961916	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	KIAA0100	NM_014680	exon16	c.A2689G	p.M897V	CCTTCATCAGCTC	.	80.0	36.0	116.0	0.0	.	.	Atlas-SNP
DCP1A	55802	hgsc.bcm.edu	37	3	53326495	53326495	+	Silent	SNP	T	T	A	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	DCP1A	NM_018403	exon7	c.A987T	p.A329A	AACCTGTGCAGTA	.	431.0	164.0	464.0	0.0	.	.	Atlas-SNP
ZNF394	84124	hgsc.bcm.edu	37	7	99091412	99091412	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	ZNF394	NM_032164	exon3	c.A1426G	p.K476E	AGCTCTTCTCGCA	.	219.0	68.0	187.0	0.0	.	.	Atlas-SNP
MCAT	27349	hgsc.bcm.edu	37	22	43538972	43538972	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	MCAT	NM_014507	exon1	c.C383T	p.S128L	GCCAGCGATGCCA	.	197.0	70.0	136.0	0.0	.	.	Atlas-SNP
CASD1	64921	hgsc.bcm.edu	37	7	94164818	94164818	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	CASD1	NM_022900	exon8	c.G826C	p.E276Q	CTTCCTGAATCGA	.	192.0	77.0	190.0	0.0	.	.	Atlas-SNP
GAREM	64762	hgsc.bcm.edu	37	18	29867200	29867200	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	.	NM_022751	exon4	c.G1360A	p.E454K	GCTCTTCGTAGGG	.	103.0	12.0	86.0	0.0	.	.	Atlas-SNP
FANCA	2175	hgsc.bcm.edu	37	16	89849430	89849430	+	Silent	SNP	C	C	T	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	FANCA	NM_000135	exon16	c.G1551A	p.R517R	GGCCAGCCGTGTC	.	393.0	157.0	326.0	0.0	.	.	Atlas-SNP
FILIP1L	11259	hgsc.bcm.edu	37	3	99567249	99567249	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	FILIP1L	NM_182909	exon5	c.C3271T	p.R1091X	GAGTTCGGTTATC	.	502.0	27.0	553.0	0.0	.	.	Atlas-SNP
LARP1B	55132	hgsc.bcm.edu	37	4	129028308	129028308	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	LARP1B	NM_032239	exon9	c.C828A	p.S276R	GGATAGCACAGAA	.	111.0	47.0	123.0	0.0	.	.	Atlas-SNP
POLE	5426	hgsc.bcm.edu	37	12	133219191	133219191	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	POLE	NM_006231	exon37	c.A4853G	p.N1618S	CCATAGTTGATCT	.	140.0	40.0	77.0	0.0	.	.	Atlas-SNP
PRMT3	10196	hgsc.bcm.edu	37	11	20409581	20409581	+	Silent	SNP	G	G	T	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	PRMT3	NM_005788	exon2	c.G45T	p.V15V	CGCTGTGGAGAAT	.	212.0	76.0	185.0	0.0	.	.	Atlas-SNP
HIP1	3092	hgsc.bcm.edu	37	7	75174427	75174427	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	HIP1	NM_005338	exon26	c.C2619G	p.I873M	GGCTGAGATAAGT	.	60.0	24.0	78.0	0.0	.	.	Atlas-SNP
DHX34	9704	hgsc.bcm.edu	37	19	47876048	47876048	+	Silent	SNP	C	C	A	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	DHX34	NM_014681	exon8	c.C1830A	p.A610A	CGCAGCCGCACTT	.	156.0	105.0	185.0	0.0	.	.	Atlas-SNP
GPR17	2840	hgsc.bcm.edu	37	2	128408959	128408959	+	Missense_Mutation	SNP	G	G	A	rs151092449		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	GPR17	NM_005291	exon3	c.G734A	p.R245H	TCATCCGCAGCCT	.	183.0	61.0	137.0	0.0	G|1.000;A|0.000	.	Atlas-SNP
CHRM5	1133	hgsc.bcm.edu	37	15	34355738	34355738	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	CHRM5,brain,glioma,-1	CHRM5	NM_012125	exon3	c.T820C	p.S274P	TCATCCTCCCGCA	.	54.0	24.0	33.0	0.0	.	.	Atlas-SNP
IGF1R	3480	hgsc.bcm.edu	37	15	99467825	99467825	+	Silent	SNP	G	G	A	rs146023463		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	IGF1R	NM_000875	exon13	c.G2694A	p.P898P	AAACCCGGGGAAC	.	195.0	72.0	198.0	0.0	G|1.000;A|0.000	.	Atlas-SNP
CPA5	93979	hgsc.bcm.edu	37	7	130007288	130007288	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	CPA5	NM_080385	exon11	c.C914T	p.A305V	TGGCTGCCATAGT	.	299.0	91.0	269.0	0.0	.	.	Atlas-SNP
