Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	Algorithm
F8A2	474383	hgsc.bcm.edu	37	X	154687164	154687164	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	.	NM_001007523	exon1	c.1099delT	p.S367fs	.	.	398.0	29.0	481.0	0.0	.	.	Atlas-Indel
SRCAP	10847	hgsc.bcm.edu	37	16	30745026	30745026	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SRCAP	NM_006662	exon29	c.6400delG	p.V2134fs	.	.	171.0	13.0	155.0	0.0	.	.	Atlas-Indel
MYCBP2	23077	hgsc.bcm.edu	37	13	77636737	77636737	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	MYCBP2	NM_015057	exon74	c.12769delC	p.Q4257fs	.	.	173.0	13.0	217.0	0.0	.	.	Atlas-Indel
SLC28A1	9154	hgsc.bcm.edu	37	15	85431063	85431063	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SLC28A1	NM_201651	exon3	c.71delT	p.M24fs	.	.	156.0	11.0	231.0	0.0	.	.	Atlas-Indel
NCKAP1	10787	hgsc.bcm.edu	37	2	183822266	183822266	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	NCKAP1	NM_205842	exon20	c.1959delG	p.K653fs	.	.	190.0	14.0	243.0	0.0	.	.	Atlas-Indel
IL13RA2	3598	hgsc.bcm.edu	37	X	114248379	114248379	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	IL13RA2	NM_000640	exon5	c.475delC	p.P159fs	.	.	199.0	12.0	275.0	0.0	.	.	Atlas-Indel
TFDP1	7027	hgsc.bcm.edu	37	13	114240158	114240158	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	TFDP1	NM_007111	exon2	c.5delC	p.A2fs	.	.	123.0	12.0	167.0	0.0	.	.	Atlas-Indel
PRMT5	10419	hgsc.bcm.edu	37	14	23398414	23398414	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PRMT5	NM_001039619	exon1	c.22delA	p.T8fs	.	.	180.0	12.0	188.0	0.0	.	.	Atlas-Indel
SPATA31D4	389761	hgsc.bcm.edu	37	9	84545071	84545071	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	.	NM_001145197	exon3	c.288delG	p.L96fs	.	.	270.0	17.0	261.0	0.0	.	.	Atlas-Indel
CREG2	200407	hgsc.bcm.edu	37	2	102000039	102000039	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CREG2	NM_153836	exon2	c.568delA	p.M190fs	.	.	89.0	10.0	130.0	0.0	.	.	Atlas-Indel
PLXNB1	5364	hgsc.bcm.edu	37	3	48457527	48457527	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PLXNB1	NM_001130082	exon18	c.3531delC	p.G1177fs	.	.	182.0	13.0	260.0	0.0	.	.	Atlas-Indel
CDHR3	222256	hgsc.bcm.edu	37	7	105658335	105658335	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CDHR3	NM_152750	exon12	c.1469delT	p.L490fs	.	.	135.0	11.0	141.0	0.0	.	.	Atlas-Indel
TNXB	7148	hgsc.bcm.edu	37	6	32038147	32038147	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	TNXB	NM_019105	exon14	c.5036delA	p.E1679fs	.	.	179.0	11.0	186.0	0.0	.	.	Atlas-Indel
SETD6	79918	hgsc.bcm.edu	37	16	58550759	58550759	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SETD6	NM_001160305	exon5	c.718delT	p.S240fs	.	.	164.0	10.0	197.0	0.0	.	.	Atlas-Indel
NASP	4678	hgsc.bcm.edu	37	1	46073041	46073041	+	Frame_Shift_Del	DEL	A	A	-	rs35351400		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	NASP	NM_002482	exon6	c.457delG	p.E153fs	.	.	146.0	10.0	165.0	0.0	.	.	Atlas-Indel
OR4A15	81328	hgsc.bcm.edu	37	11	55135387	55135387	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	OR4A15	NM_001005275	exon1	c.27delA	p.K9fs	.	.	156.0	10.0	188.0	0.0	.	.	Atlas-Indel
FANCE	2178	hgsc.bcm.edu	37	6	35425715	35425715	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	FANCE	NM_021922	exon4	c.922delG	p.A308fs	.	.	150.0	10.0	173.0	0.0	.	.	Atlas-Indel
MUC13	56667	hgsc.bcm.edu	37	3	124646629	124646629	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	MUC13	NM_033049	exon2	c.262delA	p.I88X	.	.	244.0	15.0	257.0	0.0	.	.	Atlas-Indel
SLC4A7	9497	hgsc.bcm.edu	37	3	27439766	27439766	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SLC4A7	NM_003615	exon17	c.2480delG	p.W827fs	.	.	183.0	11.0	241.0	0.0	.	.	Atlas-Indel
USP16	10600	hgsc.bcm.edu	37	21	30415885	30415885	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	USP16	NM_006447	exon13	c.1320delG	p.Q440fs	.	.	141.0	10.0	183.0	0.0	.	.	Atlas-Indel
OR8H1	219469	hgsc.bcm.edu	37	11	56057710	56057710	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	OR8H1	NM_001005199	exon1	c.830delA	p.Y277fs	.	.	221.0	14.0	276.0	0.0	.	.	Atlas-Indel
RFC1	5981	hgsc.bcm.edu	37	4	39322284	39322284	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	RFC1	NM_002913	exon9	c.815delC	p.T272fs	.	.	150.0	10.0	191.0	0.0	.	.	Atlas-Indel
ITGA5	3678	hgsc.bcm.edu	37	12	54798980	54798980	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ITGA5	NM_002205	exon12	c.1196delT	p.L399fs	.	.	149.0	12.0	226.0	0.0	.	.	Atlas-Indel
SLC30A1	7779	hgsc.bcm.edu	37	1	211751711	211751711	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SLC30A1	NM_021194	exon1	c.245delC	p.A82fs	.	.	166.0	10.0	152.0	0.0	.	.	Atlas-Indel
MLL	4297	hgsc.bcm.edu	37	11	118342966	118342966	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	MLL	NM_001197104	exon3	c.1091delC	p.S364X	.	.	249.0	15.0	346.0	0.0	.	.	Atlas-Indel
ZFP57	346171	hgsc.bcm.edu	37	6	29640726	29640726	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ZFP57	NM_001109809	exon4	c.1163delA	p.H388fs	.	.	160.0	11.0	232.0	0.0	.	.	Atlas-Indel
RAB10	10890	hgsc.bcm.edu	37	2	26350743	26350743	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	RAB10	NM_016131	exon5	c.441delG	p.R147fs	.	.	166.0	11.0	199.0	0.0	.	.	Atlas-Indel
AKNAD1	254268	hgsc.bcm.edu	37	1	109395035	109395035	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	AKNAD1	NM_152763	exon2	c.253delG	p.D85fs	.	.	198.0	13.0	271.0	0.0	.	.	Atlas-Indel
KIAA0319	9856	hgsc.bcm.edu	37	6	24596508	24596508	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	KIAA0319	NM_001168375	exon3	c.395delA	p.D132fs	.	.	124.0	10.0	140.0	0.0	.	.	Atlas-Indel
APBB1IP	54518	hgsc.bcm.edu	37	10	26802473	26802473	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	APBB1IP	NM_019043	exon8	c.696delG	p.R232fs	.	.	156.0	10.0	270.0	0.0	.	.	Atlas-Indel
FYN	2534	hgsc.bcm.edu	37	6	112021336	112021336	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	FYN	NM_002037	exon9	c.834delA	p.G278fs	.	.	169.0	12.0	193.0	0.0	.	.	Atlas-Indel
ERAL1	26284	hgsc.bcm.edu	37	17	27182148	27182148	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ERAL1	NM_005702	exon1	c.95delC	p.P32fs	.	.	175.0	13.0	214.0	0.0	.	.	Atlas-Indel
RNF111	54778	hgsc.bcm.edu	37	15	59383348	59383348	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	RNF111	NM_001270528	exon12	c.2760delC	p.Y920X	.	.	204.0	13.0	248.0	0.0	.	.	Atlas-Indel
EXOSC9	5393	hgsc.bcm.edu	37	4	122723068	122723068	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	EXOSC9	NM_001034194	exon2	c.152delG	p.G51fs	.	.	180.0	11.0	293.0	0.0	.	.	Atlas-Indel
COL11A1	1301	hgsc.bcm.edu	37	1	103461421	103461421	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	COL11A1	NM_080629	exon28	c.2376delG	p.K792fs	.	.	163.0	10.0	232.0	0.0	.	.	Atlas-Indel
CHORDC1	26973	hgsc.bcm.edu	37	11	89935591	89935591	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CHORDC1	NM_012124	exon11	c.982delG	p.D328fs	.	.	259.0	16.0	352.0	0.0	.	.	Atlas-Indel
UBR1	197131	hgsc.bcm.edu	37	15	43350584	43350584	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	UBR1	NM_174916	exon10	c.1138delA	p.M380fs	.	.	173.0	12.0	200.0	0.0	.	.	Atlas-Indel
TUBA3D	113457	hgsc.bcm.edu	37	2	132238225	132238225	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	TUBA3D	NM_080386	exon4	c.958delA	p.R320fs	.	.	243.0	15.0	418.0	0.0	.	.	Atlas-Indel
LGR4	55366	hgsc.bcm.edu	37	11	27389971	27389971	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	LGR4	NM_018490	exon18	c.2300delC	p.S767fs	.	.	112.0	11.0	140.0	0.0	.	.	Atlas-Indel
C12orf40	283461	hgsc.bcm.edu	37	12	40041671	40041671	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	C12orf40	NM_001031748	exon6	c.461delC	p.S154fs	.	.	221.0	15.0	310.0	0.0	.	.	Atlas-Indel
CIC	23152	hgsc.bcm.edu	37	19	42794469	42794469	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CIC	NM_015125	exon10	c.1548delG	p.G516fs	.	.	222.0	14.0	270.0	0.0	.	.	Atlas-Indel
PHTF2	57157	hgsc.bcm.edu	37	7	77567067	77567067	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PHTF2	NM_001127357	exon11	c.1276delG	p.E426fs	.	.	153.0	13.0	146.0	0.0	.	.	Atlas-Indel
VPS37C	55048	hgsc.bcm.edu	37	11	60899827	60899827	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	VPS37C	NM_017966	exon5	c.534delG	p.P178fs	.	.	196.0	12.0	206.0	0.0	.	.	Atlas-Indel
WDR78	79819	hgsc.bcm.edu	37	1	67292680	67292680	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	WDR78	NM_024763	exon15	c.2163delA	p.L721fs	.	.	360.0	24.0	461.0	0.0	.	.	Atlas-Indel
ZNF200	7752	hgsc.bcm.edu	37	16	3274133	3274133	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ZNF200	NM_003454	exon5	c.948delC	p.N316fs	.	.	175.0	11.0	221.0	0.0	.	.	Atlas-Indel
COPS2	9318	hgsc.bcm.edu	37	15	49436467	49436467	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	COPS2	NM_004236	exon3	c.204delA	p.G68fs	.	.	149.0	12.0	238.0	0.0	.	.	Atlas-Indel
BIN1	274	hgsc.bcm.edu	37	2	127821169	127821169	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	BIN1	NM_139343	exon9	c.753delC	p.N251fs	.	.	155.0	10.0	198.0	0.0	.	.	Atlas-Indel
XCR1	2829	hgsc.bcm.edu	37	3	46062566	46062566	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	XCR1	NM_001024644	exon2	c.875delT	p.V292fs	.	.	263.0	18.0	428.0	0.0	.	.	Atlas-Indel
WDR73	84942	hgsc.bcm.edu	37	15	85186894	85186894	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	WDR73	NM_032856	exon8	c.945delT	p.D315fs	.	.	150.0	14.0	168.0	0.0	.	.	Atlas-Indel
DNAJC7	7266	hgsc.bcm.edu	37	17	40141477	40141477	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	DNAJC7	NM_003315	exon7	c.699delC	p.F233fs	.	.	170.0	11.0	240.0	0.0	.	.	Atlas-Indel
NPHP1	4867	hgsc.bcm.edu	37	2	110881425	110881425	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	NPHP1	NM_000272	exon20	c.2146delG	p.D716fs	.	.	157.0	10.0	248.0	0.0	.	.	Atlas-Indel
CCNT2	905	hgsc.bcm.edu	37	2	135712007	135712007	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CCNT2	NM_058241	exon9	c.1981delG	p.V661fs	.	.	207.0	14.0	263.0	0.0	.	.	Atlas-Indel
XDH	7498	hgsc.bcm.edu	37	2	31588960	31588960	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	XDH	NM_000379	exon22	c.2339delT	p.M780fs	.	.	134.0	10.0	181.0	0.0	.	.	Atlas-Indel
RAD50	10111	hgsc.bcm.edu	37	5	131977933	131977933	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	RAD50	NM_005732	exon25	c.3815delA	p.D1272fs	.	.	185.0	12.0	270.0	0.0	.	.	Atlas-Indel
MTM1	4534	hgsc.bcm.edu	37	X	149818284	149818284	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	MTM1	NM_000252	exon10	c.962delT	p.L321X	.	.	165.0	11.0	207.0	0.0	.	.	Atlas-Indel
PDIA4	9601	hgsc.bcm.edu	37	7	148702444	148702444	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PDIA4	NM_004911	exon9	c.1312delG	p.V438fs	.	.	154.0	10.0	145.0	0.0	.	.	Atlas-Indel
HACE1	57531	hgsc.bcm.edu	37	6	105198277	105198277	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	HACE1	NM_020771	exon20	c.2283delA	p.L761fs	.	.	146.0	10.0	245.0	0.0	.	.	Atlas-Indel
USP9X	8239	hgsc.bcm.edu	37	X	41043827	41043827	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	USP9X	NM_001039591	exon23	c.3456delT	p.L1152fs	.	.	143.0	10.0	160.0	0.0	.	.	Atlas-Indel
ARAP2	116984	hgsc.bcm.edu	37	4	36148950	36148950	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ARAP2	NM_015230	exon19	c.3232delC	p.L1078fs	.	.	225.0	16.0	252.0	0.0	.	.	Atlas-Indel
ZNF331	55422	hgsc.bcm.edu	37	19	54079990	54079990	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ZNF331	NM_001253801	exon5	c.175delG	p.E59fs	.	.	180.0	13.0	221.0	0.0	.	.	Atlas-Indel
GREB1L	80000	hgsc.bcm.edu	37	18	19100709	19100709	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	.	NM_001142966	exon32	c.5532delG	p.V1844fs	.	.	171.0	12.0	225.0	0.0	.	.	Atlas-Indel
KIF21B	23046	hgsc.bcm.edu	37	1	200974546	200974546	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	KIF21B	NM_017596	exon5	c.623delC	p.A208fs	.	.	212.0	14.0	137.0	0.0	.	.	Atlas-Indel
CACUL1	143384	hgsc.bcm.edu	37	10	120514243	120514243	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	.	NM_153810	exon1	c.33delC	p.G11fs	.	.	285.0	19.0	477.0	0.0	.	.	Atlas-Indel
EPS8L2	64787	hgsc.bcm.edu	37	11	721655	721655	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	EPS8L2	NM_022772	exon10	c.858delG	p.R286fs	.	.	248.0	15.0	312.0	0.0	.	.	Atlas-Indel
TTN	7273	hgsc.bcm.edu	37	2	179485563	179485563	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	TTN	NM_001267550	exon247	c.45775delG	p.D15259fs	.	.	154.0	10.0	244.0	0.0	.	.	Atlas-Indel
SATB1	6304	hgsc.bcm.edu	37	3	18427923	18427923	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SATB1	NM_002971	exon8	c.1388delT	p.L463fs	.	.	152.0	11.0	227.0	0.0	.	.	Atlas-Indel
GLS	2744	hgsc.bcm.edu	37	2	191769844	191769844	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	GLS	NM_001256310	exon6	c.929delG	p.G310fs	.	.	147.0	11.0	222.0	0.0	.	.	Atlas-Indel
RPL23	9349	hgsc.bcm.edu	37	17	37008859	37008859	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	RPL23	NM_000978	exon3	c.225delG	p.K75fs	.	.	211.0	14.0	292.0	0.0	.	.	Atlas-Indel
TCTN2	79867	hgsc.bcm.edu	37	12	124155858	124155858	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	TCTN2	NM_024809	exon1	c.70delT	p.W24fs	.	.	123.0	10.0	148.0	0.0	.	.	Atlas-Indel
SKP2	6502	hgsc.bcm.edu	37	5	36170455	36170455	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SKP2	NM_032637	exon6	c.680delC	p.A227fs	.	.	195.0	12.0	239.0	0.0	.	.	Atlas-Indel
TMEM232	642987	hgsc.bcm.edu	37	5	109973983	109973983	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	.	NM_001039763	exon5	c.418delG	p.V140fs	.	.	303.0	19.0	365.0	0.0	.	.	Atlas-Indel
T	6862	hgsc.bcm.edu	37	6	166580213	166580213	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	T	NM_001270484	exon3	c.339delC	p.G113fs	.	.	143.0	10.0	188.0	0.0	.	.	Atlas-Indel
FSD1L	83856	hgsc.bcm.edu	37	9	108234293	108234293	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	.	NM_031919	exon4	c.351delC	p.H117fs	.	.	232.0	15.0	288.0	0.0	.	.	Atlas-Indel
MBTPS1	8720	hgsc.bcm.edu	37	16	84118656	84118656	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	MBTPS1	NM_003791	exon10	c.1219delT	p.C407fs	.	.	212.0	13.0	301.0	0.0	.	.	Atlas-Indel
ARCN1	372	hgsc.bcm.edu	37	11	118454608	118454608	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ARCN1	NM_001655	exon4	c.531delC	p.G177fs	.	.	254.0	16.0	382.0	0.0	.	.	Atlas-Indel
CC2D1B	200014	hgsc.bcm.edu	37	1	52822693	52822693	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CC2D1B	NM_032449	exon16	c.1877delT	p.M626fs	.	.	214.0	13.0	282.0	0.0	.	.	Atlas-Indel
MAB21L2	10586	hgsc.bcm.edu	37	4	151505172	151505172	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	MAB21L2	NM_006439	exon1	c.990delG	p.K330fs	.	.	129.0	10.0	183.0	0.0	.	.	Atlas-Indel
RRP7A	27341	hgsc.bcm.edu	37	22	42911202	42911202	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	RRP7A	NM_015703	exon4	c.416delT	p.L139fs	.	.	165.0	12.0	222.0	0.0	.	.	Atlas-Indel
GPBP1L1	60313	hgsc.bcm.edu	37	1	46120968	46120968	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	GPBP1L1	NM_021639	exon5	c.85delC	p.H29fs	.	.	238.0	15.0	325.0	0.0	.	.	Atlas-Indel
ABCB7	22	hgsc.bcm.edu	37	X	74282215	74282215	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ABCB7	NM_004299	exon14	c.1887delA	p.P629fs	.	.	179.0	13.0	225.0	0.0	.	.	Atlas-Indel
ZCCHC6	79670	hgsc.bcm.edu	37	9	88960648	88960648	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ZCCHC6	NM_024617	exon4	c.756delA	p.L252fs	.	.	169.0	11.0	255.0	0.0	.	.	Atlas-Indel
BPTF	2186	hgsc.bcm.edu	37	17	65870959	65870959	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	BPTF	NM_004459	exon4	c.1686delC	p.A562fs	.	.	215.0	13.0	183.0	0.0	.	.	Atlas-Indel
PBX4	80714	hgsc.bcm.edu	37	19	19681606	19681606	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PBX4	NM_025245	exon3	c.231delT	p.P77fs	.	.	136.0	11.0	198.0	0.0	.	.	Atlas-Indel
NR1H4	9971	hgsc.bcm.edu	37	12	100904639	100904639	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	NR1H4	NM_001206992	exon2	c.192delT	p.F64fs	.	.	258.0	17.0	403.0	0.0	.	.	Atlas-Indel
HYLS1	219844	hgsc.bcm.edu	37	11	125769979	125769979	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	HYLS1	NM_001134793	exon3	c.715delT	p.W239fs	.	.	128.0	10.0	181.0	0.0	.	.	Atlas-Indel
LLGL2	3993	hgsc.bcm.edu	37	17	73560534	73560534	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	LLGL2	NM_001015002	exon10	c.981delC	p.D327fs	.	.	182.0	11.0	180.0	0.0	.	.	Atlas-Indel
RBFOX1	54715	hgsc.bcm.edu	37	16	7568215	7568215	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	RBFOX1	NM_145891	exon2	c.153delT	p.A51fs	.	.	159.0	11.0	194.0	0.0	.	.	Atlas-Indel
FBP1	2203	hgsc.bcm.edu	37	9	97369188	97369188	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	FBP1	NM_000507	exon5	c.615delG	p.K205fs	.	.	216.0	15.0	326.0	0.0	.	.	Atlas-Indel
MEIS1	4211	hgsc.bcm.edu	37	2	66667704	66667704	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	MEIS1	NM_002398	exon4	c.391delG	p.E131fs	.	.	256.0	18.0	345.0	0.0	.	.	Atlas-Indel
PIK3R3	8503	hgsc.bcm.edu	37	1	46531807	46531807	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PIK3R3	NM_003629	exon5	c.541delC	p.L181fs	.	.	187.0	14.0	259.0	0.0	.	.	Atlas-Indel
CALML6	163688	hgsc.bcm.edu	37	1	1848432	1848432	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CALML6	NM_138705	exon5	c.417delA	p.A139fs	.	.	126.0	10.0	146.0	0.0	.	.	Atlas-Indel
CLCA1	1179	hgsc.bcm.edu	37	1	86957003	86957003	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CLCA1	NM_001285	exon9	c.1412delC	p.A471fs	.	.	169.0	13.0	242.0	0.0	.	.	Atlas-Indel
ZNF200	7752	hgsc.bcm.edu	37	16	3283724	3283724	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ZNF200	NM_003454	exon2	c.33delA	p.P11fs	.	.	156.0	12.0	234.0	0.0	.	.	Atlas-Indel
PKN2	5586	hgsc.bcm.edu	37	1	89273411	89273411	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PKN2	NM_006256	exon15	c.2054delT	p.I685fs	.	.	191.0	14.0	195.0	0.0	.	.	Atlas-Indel
YAP1	10413	hgsc.bcm.edu	37	11	102094405	102094405	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	YAP1	NM_001130145	exon7	c.1084delC	p.Q362fs	.	.	165.0	11.0	247.0	0.0	.	.	Atlas-Indel
ENO1	2023	hgsc.bcm.edu	37	1	8926380	8926380	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ENO1	NM_001428	exon7	c.626delA	p.D209fs	.	.	118.0	10.0	190.0	0.0	.	.	Atlas-Indel
NHSL1	57224	hgsc.bcm.edu	37	6	138817355	138817355	+	Splice_Site	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	NHSL1	NM_020464	exon3	c.355+2G>-	.	.	.	175.0	11.0	181.0	0.0	.	.	Atlas-Indel
APOH	350	hgsc.bcm.edu	37	17	64212962	64212962	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	APOH	NM_000042	exon6	c.729delG	p.P243fs	.	.	199.0	12.0	196.0	0.0	.	.	Atlas-Indel
SBDS	51119	hgsc.bcm.edu	37	7	66458407	66458407	+	Splice_Site	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SBDS	NM_016038	exon4	c.259-2T>-	.	.	.	172.0	11.0	140.0	0.0	.	.	Atlas-Indel
CLSTN3	9746	hgsc.bcm.edu	37	12	7301639	7301639	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CLSTN3	NM_014718	exon13	c.1918delG	p.A640fs	.	.	141.0	11.0	163.0	0.0	.	.	Atlas-Indel
FAM120B	84498	hgsc.bcm.edu	37	6	170639584	170639584	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	FAM120B	NM_032448	exon4	c.1962delT	p.P654fs	.	.	222.0	14.0	342.0	0.0	.	.	Atlas-Indel
CFDP1	10428	hgsc.bcm.edu	37	16	75445767	75445767	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CFDP1	NM_006324	exon4	c.487delG	p.V163fs	.	.	140.0	10.0	205.0	0.0	.	.	Atlas-Indel
DNAH5	1767	hgsc.bcm.edu	37	5	13864702	13864702	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	DNAH5	NM_001369	exon28	c.4401delG	p.L1467fs	.	.	152.0	10.0	215.0	0.0	.	.	Atlas-Indel
TMEM132C	92293	hgsc.bcm.edu	37	12	129178468	129178468	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	TMEM132C	NM_001136103	exon6	c.1543delG	p.A515fs	.	.	216.0	14.0	254.0	0.0	.	.	Atlas-Indel
MLL2	8085	hgsc.bcm.edu	37	12	49420553	49420554	+	Frame_Shift_Del	DEL	AC	AC	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	AC	AC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	MLL2	NM_003482	exon48	c.15196_15197del	p.5066_5066del	.	.	87.0	31.0	108.0	0.0	.	.	Atlas-Indel
DNAH7	56171	hgsc.bcm.edu	37	2	196681467	196681467	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	DNAH7	NM_018897	exon51	c.9647delC	p.S3216fs	.	.	349.0	21.0	416.0	0.0	.	.	Atlas-Indel
SCN10A	6336	hgsc.bcm.edu	37	3	38793861	38793861	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SCN10A	NM_006514	exon11	c.1605delC	p.G535fs	.	.	127.0	10.0	193.0	0.0	.	.	Atlas-Indel
ARID1A	8289	hgsc.bcm.edu	37	1	27092724	27092724	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ARID1A	NM_006015	exon9	c.2744delA	p.Y915fs	.	.	146.0	10.0	207.0	0.0	.	.	Atlas-Indel
PLA2G4D	283748	hgsc.bcm.edu	37	15	42377319	42377319	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PLA2G4D	NM_178034	exon6	c.447delC	p.N149fs	.	.	116.0	12.0	137.0	0.0	.	.	Atlas-Indel
C1orf131	128061	hgsc.bcm.edu	37	1	231362561	231362561	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	C1orf131	NM_152379	exon5	c.618delG	p.K206fs	.	.	214.0	16.0	123.0	0.0	.	.	Atlas-Indel
PRR12	57479	hgsc.bcm.edu	37	19	50123635	50123635	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PRR12	NM_020719	exon10	c.5523delC	p.L1841fs	.	.	185.0	12.0	218.0	0.0	.	.	Atlas-Indel
KLF9	687	hgsc.bcm.edu	37	9	73028126	73028126	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	KLF9	NM_001206	exon1	c.155delA	p.D52fs	.	.	150.0	11.0	245.0	0.0	.	.	Atlas-Indel
FHAD1	114827	hgsc.bcm.edu	37	1	15684625	15684625	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	FHAD1	NM_052929	exon20	c.2515delC	p.Q839fs	.	.	164.0	10.0	214.0	0.0	.	.	Atlas-Indel
FAM69C	125704	hgsc.bcm.edu	37	18	72113977	72113977	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	FAM69C	NM_001044369	exon2	c.741delT	p.G247fs	.	.	131.0	10.0	223.0	0.0	.	.	Atlas-Indel
SZT2	23334	hgsc.bcm.edu	37	1	43912809	43912809	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SZT2	NM_015284	exon65	c.9084delA	p.G3028fs	.	.	211.0	14.0	278.0	0.0	.	.	Atlas-Indel
EXOC2	55770	hgsc.bcm.edu	37	6	564874	564874	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	EXOC2	NM_018303	exon14	c.1500delT	p.N500fs	.	.	261.0	16.0	375.0	0.0	.	.	Atlas-Indel
MAPK10	5602	hgsc.bcm.edu	37	4	86985490	86985490	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	MAPK10	NM_138982	exon11	c.1040delG	p.R347fs	.	.	176.0	11.0	225.0	0.0	.	.	Atlas-Indel
URGCP	55665	hgsc.bcm.edu	37	7	43917420	43917420	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	URGCP	NM_001077663	exon6	c.1643delT	p.V548fs	.	.	197.0	12.0	182.0	0.0	.	.	Atlas-Indel
VARS2	57176	hgsc.bcm.edu	37	6	30890972	30890972	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	VARS2	NM_001167734	exon24	c.2366delC	p.A789fs	.	.	159.0	12.0	261.0	0.0	.	.	Atlas-Indel
ULK2	9706	hgsc.bcm.edu	37	17	19729495	19729495	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ULK2	NM_001142610	exon11	c.793delT	p.F265fs	.	.	280.0	18.0	381.0	0.0	.	.	Atlas-Indel
PSD4	23550	hgsc.bcm.edu	37	2	113950863	113950863	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PSD4	NM_012455	exon8	c.1947delT	p.S649fs	.	.	165.0	10.0	182.0	0.0	.	.	Atlas-Indel
KIT	3815	hgsc.bcm.edu	37	4	55565881	55565881	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	KIT	NM_000222	exon4	c.704delT	p.I235fs	.	.	151.0	10.0	227.0	0.0	.	.	Atlas-Indel
ZNF311	282890	hgsc.bcm.edu	37	6	28963809	28963809	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ZNF311	NM_001010877	exon7	c.971delC	p.T324fs	.	.	174.0	13.0	239.0	0.0	.	.	Atlas-Indel
TMEM62	80021	hgsc.bcm.edu	37	15	43461843	43461843	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	TMEM62	NM_024956	exon11	c.1348delA	p.I450fs	.	.	163.0	12.0	186.0	0.0	.	.	Atlas-Indel
COL24A1	255631	hgsc.bcm.edu	37	1	86196292	86196292	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	COL24A1	NM_152890	exon60	c.5083delC	p.L1695fs	.	.	164.0	10.0	204.0	0.0	.	.	Atlas-Indel
REPS2	9185	hgsc.bcm.edu	37	X	17088068	17088068	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	REPS2	NM_004726	exon11	c.1284delG	p.L428fs	.	.	169.0	12.0	233.0	0.0	.	.	Atlas-Indel
FN3KRP	79672	hgsc.bcm.edu	37	17	80674691	80674691	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	FN3KRP	NM_024619	exon1	c.59delC	p.S20fs	.	.	356.0	22.0	383.0	0.0	.	.	Atlas-Indel
ROCK1	6093	hgsc.bcm.edu	37	18	18690859	18690859	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ROCK1	NM_005406	exon1	c.14delA	p.D5fs	.	.	143.0	10.0	174.0	0.0	.	.	Atlas-Indel
NOL6	65083	hgsc.bcm.edu	37	9	33469208	33469208	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	NOL6	NM_022917	exon6	c.860delA	p.D287fs	.	.	165.0	10.0	211.0	0.0	.	.	Atlas-Indel
OR1N2	138882	hgsc.bcm.edu	37	9	125316423	125316423	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	OR1N2	NM_001004457	exon1	c.974delG	p.G325fs	.	.	159.0	10.0	223.0	0.0	.	.	Atlas-Indel
TNIK	23043	hgsc.bcm.edu	37	3	170801981	170801981	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	TNIK	NM_015028	exon26	c.3133delC	p.R1045fs	.	.	203.0	13.0	230.0	0.0	.	.	Atlas-Indel
CRYBG3	131544	hgsc.bcm.edu	37	3	97596406	97596406	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CRYBG3	NM_153605	exon4	c.6367delG	p.V2123fs	.	.	154.0	10.0	173.0	0.0	.	.	Atlas-Indel
CUL7	9820	hgsc.bcm.edu	37	6	43015994	43015994	+	Splice_Site	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CUL7	NM_014780	exon10	c.2064-2C>-	.	.	.	134.0	10.0	171.0	0.0	.	.	Atlas-Indel
PIK3C2G	5288	hgsc.bcm.edu	37	12	18716360	18716360	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PIK3C2G	NM_004570	exon27	c.3706delG	p.E1236fs	.	.	131.0	10.0	162.0	0.0	.	.	Atlas-Indel
FBXO44	93611	hgsc.bcm.edu	37	1	11721342	11721342	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	FBXO44	NM_183412	exon5	c.654delG	p.E218fs	.	.	149.0	11.0	238.0	0.0	.	.	Atlas-Indel
EDC4	23644	hgsc.bcm.edu	37	16	67917535	67917535	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	EDC4	NM_014329	exon28	c.3913delG	p.V1305fs	.	.	147.0	11.0	172.0	0.0	.	.	Atlas-Indel
LGALS3BP	3959	hgsc.bcm.edu	37	17	76968422	76968422	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	LGALS3BP	NM_005567	exon6	c.995delA	p.E332fs	.	.	143.0	11.0	101.0	0.0	.	.	Atlas-Indel
CERKL	375298	hgsc.bcm.edu	37	2	182430832	182430832	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CERKL	NM_001030311	exon4	c.631delC	p.H211fs	.	.	265.0	17.0	318.0	0.0	.	.	Atlas-Indel
HNRNPH1	3187	hgsc.bcm.edu	37	5	179044644	179044644	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	HNRNPH1	NM_001257293	exon9	c.929delC	p.S310fs	.	.	204.0	15.0	280.0	0.0	.	.	Atlas-Indel
SLC6A4	6532	hgsc.bcm.edu	37	17	28544272	28544272	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SLC6A4	NM_001045	exon6	c.750delC	p.G250fs	.	.	169.0	12.0	212.0	0.0	.	.	Atlas-Indel
ISM2	145501	hgsc.bcm.edu	37	14	77942048	77942048	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ISM2	NM_199296	exon7	c.1607delA	p.D536fs	.	.	166.0	10.0	230.0	0.0	.	.	Atlas-Indel
ANO7	50636	hgsc.bcm.edu	37	2	242129532	242129532	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ANO7	NM_001001666	exon2	c.215delG	p.S72fs	.	.	231.0	14.0	319.0	0.0	.	.	Atlas-Indel
PRKG2	5593	hgsc.bcm.edu	37	4	82027025	82027025	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PRKG2	NM_006259	exon15	c.2006delT	p.M669fs	.	.	164.0	10.0	227.0	0.0	.	.	Atlas-Indel
ERN2	10595	hgsc.bcm.edu	37	16	23717673	23717673	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ERN2	NM_033266	exon7	c.712delA	p.M238fs	.	.	166.0	12.0	210.0	0.0	.	.	Atlas-Indel
GCNT2	2651	hgsc.bcm.edu	37	6	10586407	10586407	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	GCNT2	NM_145655	exon1	c.184delG	p.E62fs	.	.	158.0	10.0	247.0	0.0	.	.	Atlas-Indel
ZNF324	25799	hgsc.bcm.edu	37	19	58983203	58983203	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ZNF324	NM_014347	exon4	c.1343delC	p.T448fs	.	.	153.0	11.0	219.0	0.0	.	.	Atlas-Indel
UBR1	197131	hgsc.bcm.edu	37	15	43363019	43363019	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	UBR1	NM_174916	exon5	c.634delG	p.E212fs	.	.	130.0	10.0	121.0	0.0	.	.	Atlas-Indel
RNASE12	493901	hgsc.bcm.edu	37	14	21058692	21058692	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	RNASE12	NM_001024822	exon1	c.192delG	p.K64fs	.	.	165.0	11.0	192.0	0.0	.	.	Atlas-Indel
C9orf84	158401	hgsc.bcm.edu	37	9	114453859	114453859	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	C9orf84	NM_173521	exon25	c.4207delA	p.N1403fs	.	.	172.0	11.0	228.0	0.0	.	.	Atlas-Indel
ZNF749	388567	hgsc.bcm.edu	37	19	57955160	57955160	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	.	NM_001023561	exon3	c.643delC	p.Q215fs	.	.	140.0	11.0	166.0	0.0	.	.	Atlas-Indel
TNRC6A	27327	hgsc.bcm.edu	37	16	24802560	24802560	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	TNRC6A	NM_014494	exon6	c.2596delT	p.W866fs	.	.	227.0	15.0	306.0	0.0	.	.	Atlas-Indel
TSNAX-DISC1	0	hgsc.bcm.edu	37	1	232099236	232099236	+	RNA	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	.	.	.	.	.	.	.	199.0	14.0	137.0	0.0	.	.	Atlas-Indel
ZFYVE20	64145	hgsc.bcm.edu	37	3	15132024	15132024	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ZFYVE20	NM_022340	exon5	c.172delG	p.A58fs	.	.	184.0	13.0	219.0	0.0	.	.	Atlas-Indel
BMP2K	55589	hgsc.bcm.edu	37	4	79768365	79768365	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	BMP2K	NM_017593	exon6	c.691delG	p.A231fs	.	.	159.0	14.0	245.0	0.0	.	.	Atlas-Indel
FOXI1	2299	hgsc.bcm.edu	37	5	169533034	169533034	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	FOXI1	NM_012188	exon1	c.72delG	p.E24fs	.	.	283.0	17.0	411.0	0.0	.	.	Atlas-Indel
PRMT5	10419	hgsc.bcm.edu	37	14	23391406	23391406	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PRMT5	NM_006109	exon16	c.1741delC	p.P581fs	.	.	135.0	12.0	193.0	0.0	.	.	Atlas-Indel
ENTPD6	955	hgsc.bcm.edu	37	20	25203522	25203522	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ENTPD6	NM_001247	exon12	c.1093delC	p.Q365fs	.	.	151.0	10.0	227.0	0.0	.	.	Atlas-Indel
DSP	1832	hgsc.bcm.edu	37	6	7585185	7585185	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	DSP	NM_004415	exon24	c.7689delG	p.L2563fs	.	.	186.0	13.0	211.0	0.0	.	.	Atlas-Indel
DDX31	64794	hgsc.bcm.edu	37	9	135537941	135537941	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	DDX31	NM_022779	exon2	c.533delT	p.M178fs	.	.	188.0	14.0	231.0	0.0	.	.	Atlas-Indel
CNTN6	27255	hgsc.bcm.edu	37	3	1427450	1427450	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CNTN6	NM_014461	exon20	c.2672delG	p.S891fs	.	.	150.0	11.0	203.0	0.0	.	.	Atlas-Indel
ZMIZ2	83637	hgsc.bcm.edu	37	7	44806215	44806215	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ZMIZ2	NM_031449	exon18	c.2607delG	p.G869fs	.	.	170.0	12.0	109.0	0.0	.	.	Atlas-Indel
HELQ	113510	hgsc.bcm.edu	37	4	84358058	84358058	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	HELQ	NM_133636	exon9	c.2002delA	p.T668fs	.	.	163.0	10.0	234.0	0.0	.	.	Atlas-Indel
FBN1	2200	hgsc.bcm.edu	37	15	48748935	48748935	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	FBN1	NM_000138	exon44	c.5322delA	p.P1774fs	.	.	157.0	11.0	205.0	0.0	.	.	Atlas-Indel
C1orf228	339541	hgsc.bcm.edu	37	1	45169781	45169781	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	.	NM_001145636	exon6	c.659delA	p.H220fs	.	.	149.0	10.0	230.0	0.0	.	.	Atlas-Indel
ACP1	52	hgsc.bcm.edu	37	2	277054	277054	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ACP1	NM_007099	exon5	c.367delC	p.Q123fs	.	.	171.0	11.0	279.0	0.0	.	.	Atlas-Indel
C5orf42	65250	hgsc.bcm.edu	37	5	37153894	37153894	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	C5orf42	NM_023073	exon41	c.8160delC	p.N2720fs	.	.	164.0	10.0	179.0	0.0	.	.	Atlas-Indel
MAN1B1	11253	hgsc.bcm.edu	37	9	139994268	139994268	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	MAN1B1	NM_016219	exon6	c.850delT	p.W284fs	.	.	174.0	11.0	207.0	0.0	.	.	Atlas-Indel
NEUROD6	63974	hgsc.bcm.edu	37	7	31378032	31378032	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	NEUROD6	NM_022728	exon2	c.852delT	p.N284fs	.	.	157.0	10.0	121.0	0.0	.	.	Atlas-Indel
KAT6A	7994	hgsc.bcm.edu	37	8	41791683	41791683	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	.	NM_006766	exon17	c.4056delA	p.L1352fs	.	.	155.0	10.0	217.0	0.0	.	.	Atlas-Indel
SYCP1	6847	hgsc.bcm.edu	37	1	115520224	115520224	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SYCP1	NM_003176	exon28	c.2368delG	p.E790fs	.	.	133.0	12.0	112.0	0.0	.	.	Atlas-Indel
LUC7L3	51747	hgsc.bcm.edu	37	17	48814327	48814327	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	LUC7L3	NM_006107	exon2	c.105delT	p.C35X	.	.	165.0	11.0	209.0	0.0	.	.	Atlas-Indel
COG2	22796	hgsc.bcm.edu	37	1	230800279	230800279	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	COG2	NM_007357	exon5	c.430delG	p.E144fs	.	.	269.0	18.0	173.0	0.0	.	.	Atlas-Indel
ATXN1	6310	hgsc.bcm.edu	37	6	16327823	16327823	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ATXN1	NM_000332	exon8	c.720delA	p.P240fs	.	.	179.0	11.0	187.0	0.0	.	.	Atlas-Indel
YIPF4	84272	hgsc.bcm.edu	37	2	32503243	32503243	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	YIPF4	NM_032312	exon1	c.18delG	p.P6fs	.	.	124.0	10.0	184.0	0.0	.	.	Atlas-Indel
EHBP1	23301	hgsc.bcm.edu	37	2	62991489	62991489	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	EHBP1	NM_001142616	exon4	c.250delC	p.L84fs	.	.	164.0	10.0	262.0	0.0	.	.	Atlas-Indel
TPCN2	219931	hgsc.bcm.edu	37	11	68839465	68839465	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	TPCN2	NM_139075	exon11	c.1034delT	p.V345fs	.	.	102.0	10.0	123.0	0.0	.	.	Atlas-Indel
SH2D1A	4068	hgsc.bcm.edu	37	X	123504064	123504064	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SH2D1A	NM_001114937	exon3	c.239delT	p.I80fs	.	.	209.0	15.0	283.0	0.0	.	.	Atlas-Indel
KLHDC9	126823	hgsc.bcm.edu	37	1	161068399	161068399	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	KLHDC9	NM_152366	exon1	c.73delC	p.L25fs	.	.	224.0	15.0	209.0	0.0	.	.	Atlas-Indel
CD40	958	hgsc.bcm.edu	37	20	44747014	44747014	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CD40	NM_152854	exon1	c.31delT	p.W11fs	.	.	171.0	11.0	244.0	0.0	.	.	Atlas-Indel
HCK	3055	hgsc.bcm.edu	37	20	30640230	30640230	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	HCK	NM_001172130	exon1	c.2delT	p.L1fs	.	.	197.0	13.0	299.0	0.0	.	.	Atlas-Indel
ELMO1	9844	hgsc.bcm.edu	37	7	37172765	37172765	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ELMO1	NM_014800	exon14	c.1162delG	p.A388fs	.	.	175.0	11.0	141.0	0.0	.	.	Atlas-Indel
GAD1	2571	hgsc.bcm.edu	37	2	171715334	171715334	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	GAD1	NM_000817	exon16	c.1541delG	p.C514fs	.	.	182.0	12.0	242.0	0.0	.	.	Atlas-Indel
AKIP1	56672	hgsc.bcm.edu	37	11	8938845	8938845	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	AKIP1	NM_020642	exon5	c.419delG	p.R140fs	.	.	163.0	11.0	210.0	0.0	.	.	Atlas-Indel
MLL4	8085	hgsc.bcm.edu	37	19	36212560	36212560	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	MLL4	NM_014727	exon3	c.2310delT	p.P770fs	.	.	103.0	10.0	135.0	0.0	.	.	Atlas-Indel
OLR1	4973	hgsc.bcm.edu	37	12	10324608	10324608	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	OLR1	NM_001172632	exon1	c.70delG	p.A24fs	.	.	201.0	16.0	267.0	0.0	.	.	Atlas-Indel
CXorf49	100130361	hgsc.bcm.edu	37	X	70984231	70984231	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	.	NM_001145140	exon1	c.957delC	p.A319fs	.	.	197.0	12.0	198.0	0.0	.	.	Atlas-Indel
SAMD15	161394	hgsc.bcm.edu	37	14	77845359	77845359	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SAMD15	NM_001010860	exon1	c.1597delG	p.E533fs	.	.	191.0	12.0	278.0	0.0	.	.	Atlas-Indel
C2CD4C	126567	hgsc.bcm.edu	37	19	408210	408210	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	C2CD4C	NM_001136263	exon2	c.153delC	p.F51fs	.	.	298.0	20.0	310.0	0.0	.	.	Atlas-Indel
RIN1	9610	hgsc.bcm.edu	37	11	66103273	66103273	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	RIN1	NM_004292	exon3	c.343delT	p.S115fs	.	.	120.0	10.0	161.0	0.0	.	.	Atlas-Indel
ATXN2	6311	hgsc.bcm.edu	37	12	111926535	111926535	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ATXN2	NM_002973	exon15	c.2466delT	p.N822fs	.	.	162.0	10.0	172.0	0.0	.	.	Atlas-Indel
PLEKHA3	65977	hgsc.bcm.edu	37	2	179363984	179363984	+	Splice_Site	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PLEKHA3	NM_019091	exon6	c.659+2A>-	.	.	.	166.0	10.0	264.0	0.0	.	.	Atlas-Indel
TIMM44	10469	hgsc.bcm.edu	37	19	8002975	8002975	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	TIMM44	NM_006351	exon3	c.250delT	p.F84fs	.	.	191.0	13.0	204.0	0.0	.	.	Atlas-Indel
APBB1	322	hgsc.bcm.edu	37	11	6416867	6416867	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	APBB1	NM_001164	exon14	c.2031delT	p.P677fs	.	.	139.0	11.0	166.0	0.0	.	.	Atlas-Indel
JAK1	3716	hgsc.bcm.edu	37	1	65309771	65309771	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	JAK1	NM_002227	exon17	c.2380delT	p.L794X	.	.	150.0	10.0	241.0	0.0	.	.	Atlas-Indel
TSPAN19	144448	hgsc.bcm.edu	37	12	85421730	85421730	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	TSPAN19	NM_001100917	exon4	c.212delG	p.C71fs	.	.	171.0	14.0	206.0	0.0	.	.	Atlas-Indel
SLC6A14	11254	hgsc.bcm.edu	37	X	115577930	115577930	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SLC6A14	NM_007231	exon7	c.812delT	p.F271fs	.	.	160.0	10.0	205.0	0.0	.	.	Atlas-Indel
DACH1	1602	hgsc.bcm.edu	37	13	72147000	72147000	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	DACH1	NM_080759	exon4	c.1278delA	p.P426fs	.	.	150.0	10.0	208.0	0.0	.	.	Atlas-Indel
BCAP31	10134	hgsc.bcm.edu	37	X	152967544	152967544	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	BCAP31	NM_001139457	exon7	c.822delC	p.N274fs	.	.	142.0	10.0	211.0	0.0	.	.	Atlas-Indel
INADL	10207	hgsc.bcm.edu	37	1	62586958	62586958	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	INADL	NM_176877	exon38	c.4995delG	p.Q1665fs	.	.	159.0	11.0	219.0	0.0	.	.	Atlas-Indel
HAMP	57817	hgsc.bcm.edu	37	19	35775716	35775716	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	HAMP	NM_021175	exon2	c.114delA	p.Q38fs	.	.	156.0	14.0	205.0	0.0	.	.	Atlas-Indel
NEK5	341676	hgsc.bcm.edu	37	13	52650224	52650224	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	NEK5	NM_199289	exon19	c.1704delT	p.N568fs	.	.	171.0	11.0	162.0	0.0	.	.	Atlas-Indel
ILF3	3609	hgsc.bcm.edu	37	19	10798146	10798146	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ILF3	NM_017620	exon18	c.2195delC	p.P732fs	.	.	146.0	11.0	182.0	0.0	.	.	Atlas-Indel
UBXN4	23190	hgsc.bcm.edu	37	2	136540331	136540331	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	UBXN4	NM_014607	exon13	c.1400delG	p.R467fs	.	.	128.0	10.0	163.0	0.0	.	.	Atlas-Indel
CHD6	84181	hgsc.bcm.edu	37	20	40033271	40033271	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CHD6	NM_032221	exon37	c.8111delA	p.E2704fs	.	.	152.0	10.0	194.0	0.0	.	.	Atlas-Indel
TOX2	84969	hgsc.bcm.edu	37	20	42694668	42694668	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	TOX2	NM_001098797	exon7	c.1276delG	p.A426fs	.	.	213.0	16.0	276.0	0.0	.	.	Atlas-Indel
PRPF8	10594	hgsc.bcm.edu	37	17	1554134	1554134	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PRPF8	NM_006445	exon43	c.6971delA	p.E2324fs	.	.	126.0	11.0	131.0	0.0	.	.	Atlas-Indel
OR4C46	119749	hgsc.bcm.edu	37	11	51515445	51515445	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	OR4C46	NM_001004703	exon1	c.163delT	p.S55fs	.	.	199.0	13.0	301.0	0.0	.	.	Atlas-Indel
TMEM102	284114	hgsc.bcm.edu	37	17	7340045	7340045	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	TMEM102	NM_178518	exon3	c.746delC	p.P249fs	.	.	161.0	10.0	212.0	0.0	.	.	Atlas-Indel
CC2D1A	54862	hgsc.bcm.edu	37	19	14024365	14024365	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CC2D1A	NM_017721	exon6	c.661delG	p.A221fs	.	.	155.0	10.0	217.0	0.0	.	.	Atlas-Indel
KATNAL1	84056	hgsc.bcm.edu	37	13	30814622	30814622	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	KATNAL1	NM_001014380	exon6	c.702delC	p.F234fs	.	.	147.0	10.0	139.0	0.0	.	.	Atlas-Indel
KCND2	3751	hgsc.bcm.edu	37	7	120372995	120372995	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	KCND2	NM_012281	exon2	c.1153delA	p.I385fs	.	.	264.0	18.0	291.0	0.0	.	.	Atlas-Indel
HERC1	8925	hgsc.bcm.edu	37	15	63999002	63999002	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	HERC1	NM_003922	exon25	c.4614delG	p.L1538fs	.	.	198.0	12.0	189.0	0.0	.	.	Atlas-Indel
OR52B6	340980	hgsc.bcm.edu	37	11	5602667	5602667	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	OR52B6	NM_001005162	exon1	c.560delA	p.Y187fs	.	.	152.0	10.0	201.0	0.0	.	.	Atlas-Indel
TACC2	10579	hgsc.bcm.edu	37	10	123985931	123985931	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	TACC2	NM_206862	exon13	c.7658delC	p.T2553fs	.	.	145.0	10.0	224.0	0.0	.	.	Atlas-Indel
UBE3B	89910	hgsc.bcm.edu	37	12	109921448	109921448	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	UBE3B	NM_001270451	exon3	c.91delC	p.R31fs	.	.	208.0	13.0	191.0	0.0	.	.	Atlas-Indel
ATP2C1	27032	hgsc.bcm.edu	37	3	130694322	130694322	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ATP2C1	NM_001199181	exon17	c.1661delC	p.A554fs	.	.	178.0	11.0	296.0	0.0	.	.	Atlas-Indel
PRKACB	5567	hgsc.bcm.edu	37	1	84644892	84644892	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PRKACB	NM_182948	exon2	c.219delC	p.D73fs	.	.	253.0	16.0	220.0	0.0	.	.	Atlas-Indel
MR1	3140	hgsc.bcm.edu	37	1	181003146	181003146	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	MR1	NM_001195035	exon2	c.2delT	p.M1fs	.	.	173.0	13.0	174.0	0.0	.	.	Atlas-Indel
OVOL2	58495	hgsc.bcm.edu	37	20	18022253	18022253	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	OVOL2	NM_021220	exon3	c.437delG	p.R146fs	.	.	145.0	10.0	189.0	0.0	.	.	Atlas-Indel
STOX1	219736	hgsc.bcm.edu	37	10	70646243	70646243	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	STOX1	NM_152709	exon3	c.2690delT	p.F897fs	.	.	112.0	10.0	135.0	0.0	.	.	Atlas-Indel
HS3ST5	222537	hgsc.bcm.edu	37	6	114378787	114378787	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	HS3ST5	NM_153612	exon2	c.676delT	p.Y226fs	.	.	330.0	21.0	401.0	0.0	.	.	Atlas-Indel
NIN	51199	hgsc.bcm.edu	37	14	51233604	51233604	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	NIN	NM_020921	exon13	c.1440delC	p.N480fs	.	.	113.0	10.0	168.0	0.0	.	.	Atlas-Indel
DNAH12	201625	hgsc.bcm.edu	37	3	57456205	57456205	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	DNAH12	NM_178504	exon16	c.2071delA	p.N691fs	.	.	228.0	14.0	262.0	0.0	.	.	Atlas-Indel
RASA1	5921	hgsc.bcm.edu	37	5	86628366	86628366	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	RASA1	NM_002890	exon3	c.734delG	p.R245fs	.	.	183.0	12.0	260.0	0.0	.	.	Atlas-Indel
TTC14	151613	hgsc.bcm.edu	37	3	180326508	180326508	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	TTC14	NM_133462	exon11	c.1309delG	p.E437fs	.	.	183.0	11.0	239.0	0.0	.	.	Atlas-Indel
KIF26B	55083	hgsc.bcm.edu	37	1	245775272	245775272	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	KIF26B	NM_018012	exon9	c.2091delA	p.K697fs	.	.	200.0	12.0	122.0	0.0	.	.	Atlas-Indel
HIATL1	84641	hgsc.bcm.edu	37	9	97213759	97213759	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	HIATL1	NM_032558	exon8	c.864delT	p.V288fs	.	.	154.0	12.0	193.0	0.0	.	.	Atlas-Indel
DENND2C	163259	hgsc.bcm.edu	37	1	115144134	115144134	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	DENND2C	NM_001256404	exon13	c.1811delC	p.S604X	.	.	259.0	16.0	374.0	0.0	.	.	Atlas-Indel
TRAF3IP1	26146	hgsc.bcm.edu	37	2	239241509	239241509	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	TRAF3IP1	NM_015650	exon6	c.959delC	p.T320fs	.	.	212.0	14.0	275.0	0.0	.	.	Atlas-Indel
CDC20B	166979	hgsc.bcm.edu	37	5	54424346	54424346	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CDC20B	NM_001145734	exon7	c.798delC	p.N266fs	.	.	171.0	11.0	262.0	0.0	.	.	Atlas-Indel
FAM160A2	84067	hgsc.bcm.edu	37	11	6245706	6245706	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	FAM160A2	NM_032127	exon2	c.42delC	p.G14fs	.	.	160.0	11.0	209.0	0.0	.	.	Atlas-Indel
OSCP1	127700	hgsc.bcm.edu	37	1	36888410	36888410	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	OSCP1	NM_145047	exon6	c.709delG	p.E237fs	.	.	197.0	12.0	243.0	0.0	.	.	Atlas-Indel
CDV3	55573	hgsc.bcm.edu	37	3	133306780	133306780	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CDV3	NM_017548	exon5	c.666delC	p.H222fs	.	.	267.0	17.0	328.0	0.0	.	.	Atlas-Indel
IGSF10	285313	hgsc.bcm.edu	37	3	151164709	151164709	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	IGSF10	NM_178822	exon4	c.3061delC	p.R1021fs	.	.	149.0	10.0	157.0	0.0	.	.	Atlas-Indel
PLEKHH3	79990	hgsc.bcm.edu	37	17	40823012	40823012	+	Splice_Site	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PLEKHH3	NM_024927	exon10	c.1421+1A>-	.	.	.	159.0	10.0	193.0	0.0	.	.	Atlas-Indel
KIF15	56992	hgsc.bcm.edu	37	3	44816769	44816769	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	KIF15	NM_020242	exon3	c.85delG	p.V29fs	.	.	167.0	11.0	212.0	0.0	.	.	Atlas-Indel
HERC3	8916	hgsc.bcm.edu	37	4	89601295	89601295	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	HERC3	NM_014606	exon20	c.2247delA	p.E749fs	.	.	99.0	13.0	124.0	0.0	.	.	Atlas-Indel
USP48	84196	hgsc.bcm.edu	37	1	22056297	22056297	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	USP48	NM_001032730	exon10	c.1201delC	p.P401fs	.	.	152.0	10.0	214.0	0.0	.	.	Atlas-Indel
LCA5L	150082	hgsc.bcm.edu	37	21	40782217	40782217	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	LCA5L	NM_152505	exon8	c.1138delT	p.S380fs	.	.	152.0	10.0	223.0	0.0	.	.	Atlas-Indel
FBXO11	80204	hgsc.bcm.edu	37	2	48066828	48066828	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	FBXO11	NM_001190274	exon2	c.314delC	p.T105fs	.	.	128.0	10.0	185.0	0.0	.	.	Atlas-Indel
SLCO1C1	53919	hgsc.bcm.edu	37	12	20885884	20885884	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SLCO1C1	NM_017435	exon10	c.1227delT	p.S409fs	.	.	151.0	11.0	201.0	0.0	.	.	Atlas-Indel
SLC8A2	6543	hgsc.bcm.edu	37	19	47944446	47944446	+	Splice_Site	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SLC8A2	NM_015063	exon7	c.1868-2C>-	.	.	.	139.0	10.0	172.0	0.0	.	.	Atlas-Indel
CHPF2	54480	hgsc.bcm.edu	37	7	150932283	150932283	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CHPF2	NM_019015	exon2	c.412delC	p.R138fs	.	.	185.0	12.0	183.0	0.0	.	.	Atlas-Indel
ALPK3	57538	hgsc.bcm.edu	37	15	85406007	85406007	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ALPK3	NM_020778	exon10	c.4876delT	p.S1626fs	.	.	176.0	11.0	227.0	0.0	.	.	Atlas-Indel
ZBTB3	79842	hgsc.bcm.edu	37	11	62520953	62520953	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ZBTB3	NM_024784	exon2	c.335delA	p.D112fs	.	.	180.0	11.0	239.0	0.0	.	.	Atlas-Indel
ARAF	369	hgsc.bcm.edu	37	X	47426094	47426094	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ARAF	NM_001256196	exon7	c.622delG	p.A208fs	.	.	263.0	17.0	383.0	0.0	.	.	Atlas-Indel
ATP6AP1L	92270	hgsc.bcm.edu	37	5	81613888	81613888	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ATP6AP1L	NM_001017971	exon4	c.443delC	p.A148fs	.	.	159.0	10.0	236.0	0.0	.	.	Atlas-Indel
MSH2	4436	hgsc.bcm.edu	37	2	47630437	47630437	+	Frame_Shift_Del	DEL	T	T	-	rs63751056		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	MSH2	NM_000251	exon1	c.106delC	p.L36fs	.	.	206.0	13.0	239.0	0.0	.	.	Atlas-Indel
COL28A1	340267	hgsc.bcm.edu	37	7	7480482	7480482	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	COL28A1	NM_001037763	exon21	c.1662delC	p.G554fs	.	.	154.0	10.0	77.0	0.0	.	.	Atlas-Indel
ASCC3	10973	hgsc.bcm.edu	37	6	100960741	100960741	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ASCC3	NM_006828	exon40	c.6130delG	p.G2044fs	.	.	172.0	11.0	196.0	0.0	.	.	Atlas-Indel
GSDMA	284110	hgsc.bcm.edu	37	17	38132221	38132221	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	GSDMA	NM_178171	exon11	c.1065delG	p.E355fs	.	.	217.0	15.0	325.0	0.0	.	.	Atlas-Indel
SSPO	23145	hgsc.bcm.edu	37	7	149489415	149489415	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	.	NM_198455	exon37	c.5567delT	p.L1856fs	.	.	169.0	11.0	129.0	0.0	.	.	Atlas-Indel
XRCC6	2547	hgsc.bcm.edu	37	22	42033647	42033647	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	XRCC6	NM_001469	exon6	c.624delT	p.P208fs	.	.	249.0	15.0	301.0	0.0	.	.	Atlas-Indel
MLL5	55904	hgsc.bcm.edu	37	7	104745930	104745930	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	MLL5	NM_182931	exon18	c.2240delG	p.G747fs	.	.	132.0	10.0	106.0	0.0	.	.	Atlas-Indel
SRP54	6729	hgsc.bcm.edu	37	14	35497334	35497334	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SRP54	NM_003136	exon15	c.1367delC	p.A456fs	.	.	158.0	11.0	161.0	0.0	.	.	Atlas-Indel
TRIM66	9866	hgsc.bcm.edu	37	11	8662474	8662474	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	TRIM66	NM_014818	exon9	c.1014delA	p.P338fs	.	.	155.0	10.0	140.0	0.0	.	.	Atlas-Indel
PHKB	5257	hgsc.bcm.edu	37	16	47630338	47630338	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PHKB	NM_000293	exon13	c.1258delG	p.E420fs	.	.	131.0	11.0	114.0	0.0	.	.	Atlas-Indel
LY75-CD302	100526664	hgsc.bcm.edu	37	2	160628476	160628476	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	.	NM_001198759	exon39	c.5509delC	p.H1837fs	.	.	189.0	12.0	230.0	0.0	.	.	Atlas-Indel
SHISA2	387914	hgsc.bcm.edu	37	13	26620702	26620702	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SHISA2	NM_001007538	exon2	c.838delT	p.F280fs	.	.	90.0	27.0	95.0	0.0	.	.	Atlas-Indel,Pindel
SV2B	9899	hgsc.bcm.edu	37	15	91811750	91811750	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SV2B	NM_014848	exon10	c.1287delG	p.V429fs	.	.	166.0	11.0	262.0	0.0	.	.	Atlas-Indel
PNPT1	87178	hgsc.bcm.edu	37	2	55887311	55887311	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PNPT1	NM_033109	exon15	c.1266delT	p.N422fs	.	.	155.0	10.0	123.0	0.0	.	.	Atlas-Indel
EP400NL	347918	hgsc.bcm.edu	37	12	132589038	132589038	+	RNA	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	.	.	.	.	.	.	.	32.0	10.0	29.0	0.0	.	.	Atlas-Indel
PREX1	57580	hgsc.bcm.edu	37	20	47253224	47253224	+	Splice_Site	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PREX1	NM_020820	exon33	c.3947-2C>-	.	.	.	150.0	11.0	227.0	0.0	.	.	Atlas-Indel
RANBP17	64901	hgsc.bcm.edu	37	5	170610183	170610183	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	RANBP17	NM_022897	exon17	c.1877delT	p.L626X	.	.	136.0	10.0	182.0	0.0	.	.	Atlas-Indel
KCNK7	10089	hgsc.bcm.edu	37	11	65363236	65363236	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	KCNK7	NM_005714	exon1	c.9delT	p.G3fs	.	.	275.0	17.0	399.0	0.0	.	.	Atlas-Indel
TCEAL4	79921	hgsc.bcm.edu	37	X	102841623	102841623	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	TCEAL4	NM_001006935	exon3	c.19delG	p.E7fs	.	.	150.0	11.0	208.0	0.0	.	.	Atlas-Indel
TMEM50A	23585	hgsc.bcm.edu	37	1	25683316	25683316	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	TMEM50A	NM_014313	exon6	c.399delA	p.V133fs	.	.	170.0	11.0	185.0	0.0	.	.	Atlas-Indel
GPANK1	7918	hgsc.bcm.edu	37	6	31630338	31630338	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	GPANK1	NM_001199238	exon4	c.777delC	p.G259fs	.	.	167.0	11.0	225.0	0.0	.	.	Atlas-Indel
PAN3	255967	hgsc.bcm.edu	37	13	28748431	28748431	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PAN3	NM_175854	exon2	c.452delC	p.A151fs	.	.	149.0	10.0	187.0	0.0	.	.	Atlas-Indel
BRSK2	9024	hgsc.bcm.edu	37	11	1477640	1477640	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	BRSK2	NM_001256630	exon17	c.1868delC	p.T623fs	.	.	147.0	10.0	209.0	0.0	.	.	Atlas-Indel
UGGT2	55757	hgsc.bcm.edu	37	13	96513105	96513105	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	UGGT2	NM_020121	exon32	c.3678delG	p.K1226fs	.	.	176.0	13.0	191.0	0.0	.	.	Atlas-Indel
CD83	9308	hgsc.bcm.edu	37	6	14131848	14131848	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CD83	NM_004233	exon3	c.250delG	p.A84fs	.	.	144.0	11.0	209.0	0.0	.	.	Atlas-Indel
TAC4	255061	hgsc.bcm.edu	37	17	47918915	47918915	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	TAC4	NM_170685	exon3	c.250delG	p.A84fs	.	.	204.0	13.0	275.0	0.0	.	.	Atlas-Indel
UBAC2	337867	hgsc.bcm.edu	37	13	99896772	99896772	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	UBAC2	NM_001144072	exon4	c.282delC	p.S94fs	.	.	144.0	10.0	196.0	0.0	.	.	Atlas-Indel
GPR162	27239	hgsc.bcm.edu	37	12	6936291	6936291	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	GPR162	NM_019858	exon5	c.1688delC	p.T563fs	.	.	153.0	10.0	146.0	0.0	.	.	Atlas-Indel
LYSMD2	256586	hgsc.bcm.edu	37	15	52017185	52017185	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	LYSMD2	NM_153374	exon2	c.408delT	p.N136fs	.	.	179.0	11.0	234.0	0.0	.	.	Atlas-Indel
XRRA1	143570	hgsc.bcm.edu	37	11	74574037	74574037	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	XRRA1	NM_182969	exon11	c.1010delC	p.S337X	.	.	165.0	10.0	233.0	0.0	.	.	Atlas-Indel
THSD7A	221981	hgsc.bcm.edu	37	7	11468622	11468622	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	THSD7A	NM_015204	exon14	c.3196delC	p.P1066fs	.	.	343.0	21.0	282.0	0.0	.	.	Atlas-Indel
BRCA1	672	hgsc.bcm.edu	37	17	41219686	41219686	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	BRCA1	NM_007300	exon17	c.5077delC	p.H1693fs	.	.	116.0	10.0	145.0	0.0	.	.	Atlas-Indel
CXCL12	6387	hgsc.bcm.edu	37	10	44871433	44871433	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CXCL12	NM_001033886	exon4	c.315delG	p.K105fs	.	.	224.0	15.0	301.0	0.0	.	.	Atlas-Indel
LYST	1130	hgsc.bcm.edu	37	1	235887447	235887447	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	LYST	NM_000081	exon39	c.9197delC	p.S3066fs	.	.	291.0	18.0	191.0	0.0	.	.	Atlas-Indel
TRAK2	66008	hgsc.bcm.edu	37	2	202245603	202245603	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	TRAK2	NM_015049	exon16	c.2409delG	p.L803fs	.	.	156.0	10.0	243.0	0.0	.	.	Atlas-Indel
FAM194B	220081	hgsc.bcm.edu	37	13	46154079	46154079	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	FAM194B	NM_182542	exon7	c.951delG	p.K317fs	.	.	201.0	16.0	296.0	0.0	.	.	Atlas-Indel
ZNF705A	440077	hgsc.bcm.edu	37	12	8330032	8330032	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ZNF705A	NM_001004328	exon5	c.755delG	p.G252fs	.	.	275.0	17.0	397.0	0.0	.	.	Atlas-Indel
TCF7L1	83439	hgsc.bcm.edu	37	2	85531091	85531091	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	TCF7L1	NM_031283	exon6	c.731delT	p.I244fs	.	.	159.0	10.0	190.0	0.0	.	.	Atlas-Indel
SGOL2	151246	hgsc.bcm.edu	37	2	201436349	201436349	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SGOL2	NM_001160046	exon7	c.1279delG	p.E427fs	.	.	179.0	11.0	216.0	0.0	.	.	Atlas-Indel
LEKR1	389170	hgsc.bcm.edu	37	3	156745953	156745953	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	LEKR1	NM_001004316	exon12	c.1429delG	p.E477fs	.	.	154.0	13.0	219.0	0.0	.	.	Atlas-Indel
PRKD2	25865	hgsc.bcm.edu	37	19	47219519	47219519	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PRKD2	NM_016457	exon1	c.110delA	p.Q37fs	.	.	180.0	11.0	218.0	0.0	.	.	Atlas-Indel
MAPK15	225689	hgsc.bcm.edu	37	8	144801240	144801240	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	MAPK15	NM_139021	exon6	c.494delT	p.L165fs	.	.	143.0	10.0	137.0	0.0	.	.	Atlas-Indel
UNC13D	201294	hgsc.bcm.edu	37	17	73836368	73836368	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	UNC13D	NM_199242	exon10	c.797delG	p.R266fs	.	.	155.0	10.0	196.0	0.0	.	.	Atlas-Indel
PIPSL	266971	hgsc.bcm.edu	37	10	95720247	95720247	+	RNA	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	.	.	.	.	.	.	.	347.0	21.0	431.0	0.0	.	.	Atlas-Indel
ZRANB2	9406	hgsc.bcm.edu	37	1	71532574	71532574	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ZRANB2	NM_005455	exon9	c.815delG	p.R272fs	.	.	163.0	11.0	231.0	0.0	.	.	Atlas-Indel
TMEM2	23670	hgsc.bcm.edu	37	9	74347297	74347297	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	TMEM2	NM_013390	exon7	c.1534delG	p.D512fs	.	.	139.0	11.0	185.0	0.0	.	.	Atlas-Indel
MLKL	197259	hgsc.bcm.edu	37	16	74725195	74725195	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	MLKL	NM_152649	exon4	c.703delC	p.L235fs	.	.	140.0	10.0	195.0	0.0	.	.	Atlas-Indel
HIVEP3	59269	hgsc.bcm.edu	37	1	41978825	41978825	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	HIVEP3	NM_024503	exon8	c.6068delC	p.A2023fs	.	.	194.0	12.0	222.0	0.0	.	.	Atlas-Indel
NOTCH2	4853	hgsc.bcm.edu	37	1	120468081	120468081	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	NOTCH2	NM_024408	exon25	c.4359delT	p.G1453fs	.	.	151.0	10.0	236.0	0.0	.	.	Atlas-Indel
ATF7IP2	80063	hgsc.bcm.edu	37	16	10551340	10551340	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ATF7IP2	NM_024997	exon7	c.1305delT	p.S435fs	.	.	186.0	13.0	212.0	0.0	.	.	Atlas-Indel
CAPS2	84698	hgsc.bcm.edu	37	12	75692472	75692472	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CAPS2	NM_032606	exon12	c.1097delA	p.Y366fs	.	.	173.0	11.0	234.0	0.0	.	.	Atlas-Indel
DENND6A	201627	hgsc.bcm.edu	37	3	57620465	57620465	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	.	NM_152678	exon13	c.1165delC	p.L389X	.	.	206.0	14.0	238.0	0.0	.	.	Atlas-Indel
MYT1	4661	hgsc.bcm.edu	37	20	62851088	62851088	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	MYT1	NM_004535	exon13	c.1993delG	p.E665fs	.	.	196.0	15.0	334.0	0.0	.	.	Atlas-Indel
LZIC	84328	hgsc.bcm.edu	37	1	9990460	9990460	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	LZIC	NM_032368	exon7	c.571delT	p.X191D	.	.	299.0	19.0	393.0	0.0	.	.	Atlas-Indel
SSX2IP	117178	hgsc.bcm.edu	37	1	85127951	85127951	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SSX2IP	NM_001166293	exon8	c.858delG	p.K286fs	.	.	146.0	10.0	177.0	0.0	.	.	Atlas-Indel
XRRA1	143570	hgsc.bcm.edu	37	11	74559430	74559430	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	XRRA1	NM_182969	exon15	c.1435delT	p.S479fs	.	.	155.0	12.0	210.0	0.0	.	.	Atlas-Indel
MGAT5	4249	hgsc.bcm.edu	37	2	135107494	135107494	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	MGAT5	NM_002410	exon9	c.1230delG	p.Q410fs	.	.	129.0	11.0	198.0	0.0	.	.	Atlas-Indel
IRS1	3667	hgsc.bcm.edu	37	2	227659975	227659975	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	IRS1	NM_005544	exon1	c.3481delA	p.K1161fs	.	.	112.0	10.0	162.0	0.0	.	.	Atlas-Indel
PCDHGA11	56105	hgsc.bcm.edu	37	5	140803107	140803107	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	.	NM_018914	exon1	c.2312delT	p.F771fs	.	.	230.0	14.0	265.0	0.0	.	.	Atlas-Indel
MYSM1	114803	hgsc.bcm.edu	37	1	59137586	59137586	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	MYSM1	NM_001085487	exon12	c.1618delG	p.G540fs	.	.	164.0	10.0	277.0	0.0	.	.	Atlas-Indel
CALD1	800	hgsc.bcm.edu	37	7	134618168	134618168	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CALD1	NM_033138	exon5	c.647delC	p.T216fs	.	.	142.0	10.0	111.0	0.0	.	.	Atlas-Indel
CYLD	1540	hgsc.bcm.edu	37	16	50811827	50811827	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	CYLD,NS,adnexal_tumour,0	CYLD	NM_015247	exon9	c.1112delC	p.S371X	.	.	152.0	10.0	165.0	0.0	.	.	Atlas-Indel
FHOD3	80206	hgsc.bcm.edu	37	18	34320658	34320658	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	FHOD3	NM_025135	exon18	c.3090delG	p.Q1030fs	.	.	190.0	12.0	239.0	0.0	.	.	Atlas-Indel
HP1BP3	50809	hgsc.bcm.edu	37	1	21097452	21097452	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	HP1BP3	NM_016287	exon6	c.626delG	p.R209fs	.	.	133.0	10.0	222.0	0.0	.	.	Atlas-Indel
FASTKD1	79675	hgsc.bcm.edu	37	2	170428277	170428277	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	FASTKD1	NM_024622	exon2	c.264delT	p.N88fs	.	.	227.0	14.0	269.0	0.0	.	.	Atlas-Indel
PAXIP1	22976	hgsc.bcm.edu	37	7	154768002	154768002	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PAXIP1	NM_007349	exon6	c.479delT	p.I160fs	.	.	177.0	12.0	195.0	0.0	.	.	Atlas-Indel
SNHG12	85028	hgsc.bcm.edu	37	1	28906485	28906485	+	RNA	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	.	.	.	.	.	.	.	161.0	10.0	199.0	0.0	.	.	Atlas-Indel
PIGW	284098	hgsc.bcm.edu	37	17	34893402	34893402	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PIGW	NM_178517	exon2	c.451delC	p.L151fs	.	.	246.0	15.0	311.0	0.0	.	.	Atlas-Indel
NEMF	9147	hgsc.bcm.edu	37	14	50267183	50267183	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	NEMF	NM_004713	exon23	c.2328delT	p.N776fs	.	.	204.0	14.0	273.0	0.0	.	.	Atlas-Indel
MED25	81857	hgsc.bcm.edu	37	19	50339074	50339074	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	MED25	NM_030973	exon16	c.1836delG	p.Q612fs	.	.	147.0	11.0	187.0	0.0	.	.	Atlas-Indel
FASTKD3	79072	hgsc.bcm.edu	37	5	7867919	7867919	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	FASTKD3	NM_024091	exon2	c.279delT	p.N93fs	.	.	151.0	10.0	196.0	0.0	.	.	Atlas-Indel
ZNF234	10780	hgsc.bcm.edu	37	19	44660629	44660629	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	.	NM_006630	exon6	c.459delC	p.Y153X	.	.	169.0	11.0	300.0	0.0	.	.	Atlas-Indel
ARHGAP17	55114	hgsc.bcm.edu	37	16	24964264	24964264	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ARHGAP17	NM_001006634	exon11	c.953delA	p.H318fs	.	.	160.0	10.0	236.0	0.0	.	.	Atlas-Indel
CHUK	1147	hgsc.bcm.edu	37	10	101964874	101964874	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CHUK	NM_001278	exon12	c.1315delG	p.E439fs	.	.	174.0	12.0	207.0	0.0	.	.	Atlas-Indel
CCDC178	374864	hgsc.bcm.edu	37	18	30846924	30846924	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	.	NM_001105528	exon13	c.1366delC	p.L456fs	.	.	225.0	17.0	278.0	0.0	.	.	Atlas-Indel
GKN2	200504	hgsc.bcm.edu	37	2	69177322	69177322	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	GKN2	NM_182536	exon3	c.141delT	p.N47fs	.	.	259.0	19.0	347.0	0.0	.	.	Atlas-Indel
MAOB	4129	hgsc.bcm.edu	37	X	43637948	43637948	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	MAOB	NM_000898	exon11	c.1119delT	p.G373fs	.	.	175.0	12.0	257.0	0.0	.	.	Atlas-Indel
FAM118B	79607	hgsc.bcm.edu	37	11	126120425	126120425	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	FAM118B	NM_024556	exon5	c.363delA	p.T121fs	.	.	160.0	10.0	220.0	0.0	.	.	Atlas-Indel
PLAU	5328	hgsc.bcm.edu	37	10	75673438	75673438	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PLAU	NM_002658	exon7	c.601delC	p.R201fs	.	.	215.0	13.0	282.0	0.0	.	.	Atlas-Indel
CASC5	57082	hgsc.bcm.edu	37	15	40913467	40913467	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CASC5	NM_170589	exon11	c.1082delA	p.N361fs	.	.	137.0	10.0	175.0	0.0	.	.	Atlas-Indel
ATG2A	23130	hgsc.bcm.edu	37	11	64673948	64673948	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ATG2A	NM_015104	exon21	c.3042delG	p.P1014fs	.	.	161.0	10.0	201.0	0.0	.	.	Atlas-Indel
CCDC138	165055	hgsc.bcm.edu	37	2	109473308	109473308	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CCDC138	NM_144978	exon13	c.1574delG	p.G525fs	.	.	137.0	11.0	231.0	0.0	.	.	Atlas-Indel
MAGED1	9500	hgsc.bcm.edu	37	X	51637805	51637806	+	Frame_Shift_Del	DEL	TG	TG	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	TG	TG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	MAGED1	NM_001005333	exon3	c.127_128del	p.43_43del	.	.	130.0	85.0	223.0	0.0	.	.	Atlas-Indel,Pindel
TPTE2	93492	hgsc.bcm.edu	37	13	20039443	20039443	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	TPTE2	NM_199254	exon10	c.629delG	p.R210fs	.	.	191.0	12.0	253.0	0.0	.	.	Atlas-Indel
PDE4A	5141	hgsc.bcm.edu	37	19	10543197	10543197	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PDE4A	NM_001111309	exon1	c.86delT	p.F29fs	.	.	206.0	13.0	259.0	0.0	.	.	Atlas-Indel
SLC35F5	80255	hgsc.bcm.edu	37	2	114493428	114493428	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SLC35F5	NM_025181	exon8	c.759delG	p.L253fs	.	.	203.0	14.0	277.0	0.0	.	.	Atlas-Indel
ANKRD30B	374860	hgsc.bcm.edu	37	18	14848892	14848892	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ANKRD30B	NM_001145029	exon34	c.3001delC	p.Q1001fs	.	.	368.0	24.0	462.0	0.0	.	.	Atlas-Indel
LAMA2	3908	hgsc.bcm.edu	37	6	129591838	129591838	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	LAMA2	NM_001079823	exon17	c.2391delT	p.T797fs	.	.	154.0	10.0	205.0	0.0	.	.	Atlas-Indel
INTS8	55656	hgsc.bcm.edu	37	8	95877744	95877744	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	INTS8	NM_017864	exon17	c.2086delC	p.L696fs	.	.	291.0	18.0	230.0	0.0	.	.	Atlas-Indel
SENP6	26054	hgsc.bcm.edu	37	6	76312282	76312282	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SENP6	NM_015571	exon1	c.41delC	p.T14fs	.	.	159.0	10.0	204.0	0.0	.	.	Atlas-Indel
PCNX	22990	hgsc.bcm.edu	37	14	71500186	71500186	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PCNX	NM_014982	exon17	c.3598delA	p.I1200fs	.	.	163.0	11.0	212.0	0.0	.	.	Atlas-Indel
ZNF425	155054	hgsc.bcm.edu	37	7	148800796	148800796	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ZNF425	NM_001001661	exon4	c.2168delC	p.S723fs	.	.	182.0	11.0	173.0	0.0	.	.	Atlas-Indel
ZCCHC14	23174	hgsc.bcm.edu	37	16	87445899	87445899	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ZCCHC14	NM_015144	exon12	c.2018delG	p.R673fs	.	.	229.0	15.0	243.0	0.0	.	.	Atlas-Indel
DYNC2H1	79659	hgsc.bcm.edu	37	11	103090657	103090657	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	DYNC2H1	NM_001377	exon56	c.8845delC	p.Q2949fs	.	.	258.0	17.0	271.0	0.0	.	.	Atlas-Indel
WNT2	7472	hgsc.bcm.edu	37	7	116962981	116962981	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	WNT2	NM_003391	exon1	c.64delG	p.E22fs	.	.	105.0	10.0	102.0	0.0	.	.	Atlas-Indel
BCL9L	283149	hgsc.bcm.edu	37	11	118779099	118779099	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	BCL9L	NM_182557	exon2	c.293delA	p.Q98fs	.	.	172.0	11.0	276.0	0.0	.	.	Atlas-Indel
ATAD2B	54454	hgsc.bcm.edu	37	2	24008915	24008915	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ATAD2B	NM_017552	exon21	c.2956delC	p.P986fs	.	.	182.0	11.0	204.0	0.0	.	.	Atlas-Indel
MUC6	4588	hgsc.bcm.edu	37	11	1024954	1024954	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	MUC6	NM_005961	exon24	c.3116delA	p.D1039fs	.	.	199.0	12.0	260.0	0.0	.	.	Atlas-Indel
NAA15	80155	hgsc.bcm.edu	37	4	140270718	140270718	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	NAA15	NM_057175	exon7	c.793delG	p.E265fs	.	.	162.0	11.0	218.0	0.0	.	.	Atlas-Indel
MOCOS	55034	hgsc.bcm.edu	37	18	33785127	33785127	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	MOCOS	NM_017947	exon6	c.1105delG	p.A369fs	.	.	199.0	12.0	260.0	0.0	.	.	Atlas-Indel
ADAMTS3	9508	hgsc.bcm.edu	37	4	73414286	73414286	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ADAMTS3	NM_014243	exon3	c.414delA	p.R138fs	.	.	173.0	11.0	257.0	0.0	.	.	Atlas-Indel
ADAMTS14	140766	hgsc.bcm.edu	37	10	72500743	72500743	+	Splice_Site	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ADAMTS14	NM_139155	exon12	c.1758-1C>-	.	.	.	162.0	10.0	265.0	0.0	.	.	Atlas-Indel
NUP98	4928	hgsc.bcm.edu	37	11	3720389	3720389	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	NUP98	NM_016320	exon25	c.3933delC	p.N1311fs	.	.	190.0	15.0	274.0	0.0	.	.	Atlas-Indel
MYH4	4622	hgsc.bcm.edu	37	17	10369889	10369889	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	MYH4	NM_017533	exon3	c.175delA	p.K59fs	.	.	261.0	17.0	357.0	0.0	.	.	Atlas-Indel
SLC29A1	2030	hgsc.bcm.edu	37	6	44199193	44199193	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SLC29A1	NM_001078175	exon10	c.858delG	p.L286fs	.	.	173.0	11.0	153.0	0.0	.	.	Atlas-Indel
OSMR	9180	hgsc.bcm.edu	37	5	38917660	38917660	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	OSMR	NM_003999	exon10	c.1297delG	p.A433fs	.	.	173.0	11.0	228.0	0.0	.	.	Atlas-Indel
PTPRZ1	5803	hgsc.bcm.edu	37	7	121650545	121650545	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PTPRZ1	NM_001206838	exon12	c.1444delT	p.S482fs	.	.	194.0	12.0	184.0	0.0	.	.	Atlas-Indel
MYH15	22989	hgsc.bcm.edu	37	3	108182059	108182059	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	MYH15	NM_014981	exon17	c.1824delG	p.K608fs	.	.	191.0	12.0	276.0	0.0	.	.	Atlas-Indel
CNNM4	26504	hgsc.bcm.edu	37	2	97427712	97427712	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CNNM4	NM_020184	exon1	c.975delC	p.D325fs	.	.	198.0	13.0	215.0	0.0	.	.	Atlas-Indel
NHS	4810	hgsc.bcm.edu	37	X	17745879	17745879	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	NHS	NM_198270	exon6	c.3589delG	p.E1197fs	.	.	157.0	11.0	215.0	0.0	.	.	Atlas-Indel
MIR1-2	406905	hgsc.bcm.edu	37	18	19408972	19408972	+	RNA	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	.	.	.	.	.	.	.	177.0	11.0	213.0	0.0	.	.	Atlas-Indel
HTATSF1	27336	hgsc.bcm.edu	37	X	135593107	135593107	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	HTATSF1	NM_001163280	exon10	c.1202delA	p.H401fs	.	.	113.0	10.0	194.0	0.0	.	.	Atlas-Indel
BRCA1	672	hgsc.bcm.edu	37	17	41251836	41251836	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	BRCA1	NM_007298	exon6	c.504delG	p.K168fs	.	.	158.0	11.0	236.0	0.0	.	.	Atlas-Indel
MSH4	4438	hgsc.bcm.edu	37	1	76269449	76269449	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	MSH4	NM_002440	exon2	c.277delG	p.E93fs	.	.	147.0	10.0	168.0	0.0	.	.	Atlas-Indel
ECHDC1	55862	hgsc.bcm.edu	37	6	127652056	127652056	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ECHDC1	NM_001139510	exon2	c.137delC	p.T46fs	.	.	142.0	10.0	187.0	0.0	.	.	Atlas-Indel
PTDSS2	81490	hgsc.bcm.edu	37	11	489639	489639	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PTDSS2	NM_030783	exon10	c.1020delG	p.M340fs	.	.	179.0	11.0	259.0	0.0	.	.	Atlas-Indel
LCE1E	353135	hgsc.bcm.edu	37	1	152760075	152760075	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	LCE1E	NM_178353	exon2	c.299delC	p.S100X	.	.	208.0	16.0	123.0	0.0	.	.	Atlas-Indel
PCF11	51585	hgsc.bcm.edu	37	11	82882908	82882908	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PCF11	NM_015885	exon9	c.3708delG	p.Q1236fs	.	.	131.0	11.0	173.0	0.0	.	.	Atlas-Indel
FAM20A	54757	hgsc.bcm.edu	37	17	66538161	66538161	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	FAM20A	NM_017565	exon7	c.1075delT	p.W359fs	.	.	174.0	11.0	154.0	0.0	.	.	Atlas-Indel
CEP152	22995	hgsc.bcm.edu	37	15	49061255	49061255	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CEP152	NM_014985	exon14	c.1807delC	p.P603fs	.	.	148.0	10.0	144.0	0.0	.	.	Atlas-Indel
PANK2	80025	hgsc.bcm.edu	37	20	3899427	3899427	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PANK2	NM_153638	exon6	c.1645delC	p.L549fs	.	.	250.0	15.0	385.0	0.0	.	.	Atlas-Indel
SEC16B	89866	hgsc.bcm.edu	37	1	177913790	177913790	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SEC16B	NM_033127	exon15	c.1788delG	p.L596fs	.	.	131.0	11.0	105.0	0.0	.	.	Atlas-Indel
CSTF3	1479	hgsc.bcm.edu	37	11	33121158	33121158	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CSTF3	NM_001326	exon11	c.933delG	p.K311fs	.	.	248.0	16.0	324.0	0.0	.	.	Atlas-Indel
NUDT12	83594	hgsc.bcm.edu	37	5	102895020	102895020	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	NUDT12	NM_031438	exon3	c.357delT	p.N119fs	.	.	164.0	10.0	172.0	0.0	.	.	Atlas-Indel
ZDBF2	57683	hgsc.bcm.edu	37	2	207175038	207175038	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ZDBF2	NM_020923	exon5	c.5785delC	p.Q1929fs	.	.	177.0	11.0	261.0	0.0	.	.	Atlas-Indel
HLA-E	3133	hgsc.bcm.edu	37	6	30458916	30458916	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	HLA-E	NM_005516	exon4	c.612delG	p.E204fs	.	.	174.0	11.0	283.0	0.0	.	.	Atlas-Indel
TNRC6A	27327	hgsc.bcm.edu	37	16	24807240	24807240	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	TNRC6A	NM_014494	exon9	c.3540delC	p.G1180fs	.	.	224.0	14.0	266.0	0.0	.	.	Atlas-Indel
COL4A3BP	10087	hgsc.bcm.edu	37	5	74675197	74675197	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	COL4A3BP	NM_001130105	exon18	c.2234delC	p.T745fs	.	.	179.0	11.0	215.0	0.0	.	.	Atlas-Indel
SERHL2	253190	hgsc.bcm.edu	37	22	42951001	42951001	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SERHL2	NM_014509	exon2	c.79delT	p.W27fs	.	.	165.0	10.0	225.0	0.0	.	.	Atlas-Indel
STK24	8428	hgsc.bcm.edu	37	13	99114125	99114125	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	STK24	NM_003576	exon8	c.993delC	p.G331fs	.	.	178.0	11.0	289.0	0.0	.	.	Atlas-Indel
PHF21A	51317	hgsc.bcm.edu	37	11	45992680	45992680	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PHF21A	NM_016621	exon7	c.600delC	p.N200fs	.	.	264.0	17.0	392.0	0.0	.	.	Atlas-Indel
LCA5	167691	hgsc.bcm.edu	37	6	80223315	80223315	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	LCA5	NM_001122769	exon3	c.335delT	p.I112fs	.	.	148.0	10.0	216.0	0.0	.	.	Atlas-Indel
ITPR2	3709	hgsc.bcm.edu	37	12	26839461	26839461	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ITPR2	NM_002223	exon11	c.1102delG	p.E368fs	.	.	142.0	14.0	200.0	0.0	.	.	Atlas-Indel
QRFPR	84109	hgsc.bcm.edu	37	4	122253996	122253996	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	QRFPR	NM_198179	exon4	c.778delG	p.E260fs	.	.	221.0	15.0	300.0	0.0	.	.	Atlas-Indel
ADAMTSL4	54507	hgsc.bcm.edu	37	1	150531054	150531054	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ADAMTSL4	NM_019032	exon15	c.2487delG	p.Q829fs	.	.	219.0	14.0	201.0	0.0	.	.	Atlas-Indel
USP13	8975	hgsc.bcm.edu	37	3	179408081	179408081	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	USP13	NM_003940	exon3	c.346delA	p.I116fs	.	.	175.0	11.0	270.0	0.0	.	.	Atlas-Indel
AHI1	54806	hgsc.bcm.edu	37	6	135768254	135768254	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	AHI1	NM_001134832	exon12	c.1672delG	p.G558fs	.	.	161.0	10.0	208.0	0.0	.	.	Atlas-Indel
TRPV1	7442	hgsc.bcm.edu	37	17	3495572	3495572	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	TRPV1	NM_018727	exon2	c.74delT	p.L25fs	.	.	132.0	11.0	159.0	0.0	.	.	Atlas-Indel
USP40	55230	hgsc.bcm.edu	37	2	234386085	234386085	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	USP40	NM_018218	exon31	c.3698delG	p.R1233fs	.	.	128.0	10.0	124.0	0.0	.	.	Atlas-Indel
F2R	2149	hgsc.bcm.edu	37	5	76029269	76029269	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	F2R	NM_001992	exon2	c.1218delT	p.S406fs	.	.	202.0	13.0	325.0	0.0	.	.	Atlas-Indel
SI	6476	hgsc.bcm.edu	37	3	164700065	164700065	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SI	NM_001041	exon47	c.5382delT	p.N1794fs	.	.	147.0	10.0	194.0	0.0	.	.	Atlas-Indel
MICALCL	84953	hgsc.bcm.edu	37	11	12315123	12315123	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	MICALCL	NM_032867	exon3	c.144delG	p.E48fs	.	.	142.0	10.0	137.0	0.0	.	.	Atlas-Indel
OXR1	55074	hgsc.bcm.edu	37	8	107726147	107726147	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	OXR1	NM_001198532	exon10	c.1892delT	p.V631fs	.	.	223.0	14.0	245.0	0.0	.	.	Atlas-Indel
AKAP9	10142	hgsc.bcm.edu	37	7	91732039	91732039	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	AKAP9	NM_005751	exon46	c.11228delT	p.M3743fs	.	.	170.0	11.0	139.0	0.0	.	.	Atlas-Indel
RALGPS2	55103	hgsc.bcm.edu	37	1	178780494	178780494	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	RALGPS2	NM_152663	exon6	c.341delT	p.L114X	.	.	309.0	19.0	200.0	0.0	.	.	Atlas-Indel
ZFY	7544	hgsc.bcm.edu	37	Y	2847675	2847675	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	.	NM_003411	exon8	c.2046delT	p.G682fs	.	.	186.0	13.0	264.0	0.0	.	.	Atlas-Indel
SPAG1	6674	hgsc.bcm.edu	37	8	101252868	101252868	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SPAG1	NM_172218	exon18	c.2517delG	p.M839fs	.	.	236.0	18.0	216.0	0.0	.	.	Atlas-Indel
IBTK	25998	hgsc.bcm.edu	37	6	82949918	82949918	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	IBTK	NM_015525	exon2	c.287delA	p.Y96fs	.	.	171.0	11.0	222.0	0.0	.	.	Atlas-Indel
FAM117B	150864	hgsc.bcm.edu	37	2	203630172	203630172	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	FAM117B	NM_173511	exon8	c.1454delC	p.P485fs	.	.	140.0	10.0	163.0	0.0	.	.	Atlas-Indel
FAHD2A	51011	hgsc.bcm.edu	37	2	96078466	96078466	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	FAHD2A	NM_016044	exon7	c.835delA	p.T279fs	.	.	214.0	14.0	292.0	0.0	.	.	Atlas-Indel
MED13	9969	hgsc.bcm.edu	37	17	60033826	60033826	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	MED13	NM_005121	exon24	c.5498delG	p.S1833fs	.	.	247.0	17.0	221.0	0.0	.	.	Atlas-Indel
ABCA10	10349	hgsc.bcm.edu	37	17	67218780	67218780	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ABCA10	NM_080282	exon5	c.94delT	p.Y32fs	.	.	217.0	17.0	189.0	0.0	.	.	Atlas-Indel
GMPPA	29926	hgsc.bcm.edu	37	2	220364899	220364899	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	GMPPA	NM_205847	exon3	c.96delA	p.A32fs	.	.	152.0	11.0	239.0	0.0	.	.	Atlas-Indel
TNS1	7145	hgsc.bcm.edu	37	2	218674974	218674974	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	TNS1	NM_022648	exon29	c.4790delC	p.A1597fs	.	.	158.0	13.0	224.0	0.0	.	.	Atlas-Indel
ZNF33A	7581	hgsc.bcm.edu	37	10	38344315	38344315	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ZNF33A	NM_006954	exon5	c.1262delC	p.T421fs	.	.	152.0	10.0	164.0	0.0	.	.	Atlas-Indel
YTHDC1	91746	hgsc.bcm.edu	37	4	69195927	69195927	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	YTHDC1	NM_001031732	exon8	c.1225delT	p.F409fs	.	.	185.0	12.0	149.0	0.0	.	.	Atlas-Indel
PLD1	5337	hgsc.bcm.edu	37	3	171426604	171426604	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PLD1	NM_002662	exon11	c.1087delG	p.E363fs	.	.	152.0	10.0	152.0	0.0	.	.	Atlas-Indel
HYDIN	54768	hgsc.bcm.edu	37	16	70843883	70843883	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	HYDIN	NM_001270974	exon85	c.14687delT	p.L4896fs	.	.	145.0	10.0	241.0	0.0	.	.	Atlas-Indel
TSPAN14	81619	hgsc.bcm.edu	37	10	82271995	82271995	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	TSPAN14	NM_030927	exon6	c.545delT	p.V182fs	.	.	166.0	10.0	233.0	0.0	.	.	Atlas-Indel
GPR155	151556	hgsc.bcm.edu	37	2	175318465	175318465	+	Splice_Site	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	GPR155	NM_001267051	exon11	c.1792+1A>-	.	.	.	114.0	10.0	156.0	0.0	.	.	Atlas-Indel
ADAM8	101	hgsc.bcm.edu	37	10	135089017	135089017	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ADAM8	NM_001164489	exon2	c.122delG	p.R41fs	.	.	247.0	16.0	299.0	0.0	.	.	Atlas-Indel
HLA-A	3105	hgsc.bcm.edu	37	6	29910372	29910372	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	HLA-A	NM_002116	exon1	c.41delC	p.S14fs	.	.	200.0	16.0	292.0	0.0	.	.	Atlas-Indel
GRIN2D	2906	hgsc.bcm.edu	37	19	48918135	48918135	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	GRIN2D	NM_000836	exon6	c.1426delG	p.A476fs	.	.	162.0	11.0	244.0	0.0	.	.	Atlas-Indel
SCLT1	132320	hgsc.bcm.edu	37	4	129873978	129873978	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SCLT1	NM_144643	exon14	c.1165delC	p.Q389fs	.	.	175.0	18.0	227.0	0.0	.	.	Atlas-Indel
DCTN2	10540	hgsc.bcm.edu	37	12	57928844	57928844	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	DCTN2	NM_001261412	exon5	c.365delT	p.I122fs	.	.	209.0	13.0	289.0	0.0	.	.	Atlas-Indel
STAB1	23166	hgsc.bcm.edu	37	3	52543930	52543930	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	STAB1	NM_015136	exon23	c.2391delT	p.S797fs	.	.	219.0	16.0	278.0	0.0	.	.	Atlas-Indel
CAB39	51719	hgsc.bcm.edu	37	2	231657931	231657931	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CAB39	NM_001130850	exon4	c.282delC	p.G94fs	.	.	177.0	15.0	271.0	0.0	.	.	Atlas-Indel
SUPT5H	6829	hgsc.bcm.edu	37	19	39959402	39959402	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SUPT5H	NM_003169	exon13	c.1043delT	p.L348fs	.	.	121.0	10.0	167.0	0.0	.	.	Atlas-Indel
ANKS1A	23294	hgsc.bcm.edu	37	6	34951143	34951143	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ANKS1A	NM_015245	exon7	c.952delA	p.T318fs	.	.	135.0	14.0	146.0	0.0	.	.	Atlas-Indel
DST	667	hgsc.bcm.edu	37	6	56340988	56340988	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	DST	NM_015548	exon73	c.13955delA	p.Q4652fs	.	.	153.0	11.0	198.0	0.0	.	.	Atlas-Indel
HIRA	7290	hgsc.bcm.edu	37	22	19346949	19346949	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	HIRA	NM_003325	exon18	c.2145delC	p.G715fs	.	.	147.0	10.0	182.0	0.0	.	.	Atlas-Indel
SAMM50	25813	hgsc.bcm.edu	37	22	44368791	44368791	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SAMM50	NM_015380	exon6	c.469delG	p.E157fs	.	.	142.0	11.0	208.0	0.0	.	.	Atlas-Indel
ENGASE	64772	hgsc.bcm.edu	37	17	77075666	77075666	+	Frame_Shift_Del	DEL	T	T	-	rs113488517		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ENGASE	NM_001042573	exon4	c.511delA	p.I171fs	.	.	156.0	10.0	156.0	0.0	-|1.000;|0.000	.	Atlas-Indel
ERF	2077	hgsc.bcm.edu	37	19	42753385	42753385	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ERF	NM_006494	exon4	c.880delC	p.P294fs	.	.	163.0	11.0	187.0	0.0	.	.	Atlas-Indel
CCT8	10694	hgsc.bcm.edu	37	21	30439316	30439316	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CCT8	NM_006585	exon5	c.459delC	p.N153fs	.	.	257.0	16.0	317.0	0.0	.	.	Atlas-Indel
SRRM1	10250	hgsc.bcm.edu	37	1	24996012	24996012	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SRRM1	NM_005839	exon14	c.2137delT	p.S713fs	.	.	128.0	10.0	201.0	0.0	.	.	Atlas-Indel
DPYD	1806	hgsc.bcm.edu	37	1	98144679	98144679	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	DPYD	NM_000110	exon8	c.823delG	p.G275fs	.	.	141.0	10.0	138.0	0.0	.	.	Atlas-Indel
COL6A3	1293	hgsc.bcm.edu	37	2	238285701	238285701	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	COL6A3	NM_004369	exon7	c.2785delG	p.V929X	.	.	154.0	11.0	233.0	0.0	.	.	Atlas-Indel
UGT1A5	54579	hgsc.bcm.edu	37	2	234622350	234622350	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	UGT1A5	NM_019078	exon1	c.712delC	p.L238fs	.	.	200.0	13.0	336.0	0.0	.	.	Atlas-Indel
WBP11	51729	hgsc.bcm.edu	37	12	14941929	14941929	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	WBP11	NM_016312	exon11	c.1449delT	p.P483fs	.	.	151.0	10.0	181.0	0.0	.	.	Atlas-Indel
RPS27A	6233	hgsc.bcm.edu	37	2	55461316	55461316	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	RPS27A	NM_001135592	exon4	c.164delC	p.T55fs	.	.	249.0	16.0	329.0	0.0	.	.	Atlas-Indel
SECISBP2L	9728	hgsc.bcm.edu	37	15	49304846	49304846	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SECISBP2L	NM_001193489	exon12	c.1731delG	p.K577fs	.	.	141.0	10.0	165.0	0.0	.	.	Atlas-Indel
PHF3	23469	hgsc.bcm.edu	37	6	64404551	64404551	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PHF3	NM_015153	exon5	c.2576delT	p.M859fs	.	.	164.0	11.0	215.0	0.0	.	.	Atlas-Indel
SCEL	8796	hgsc.bcm.edu	37	13	78188077	78188077	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SCEL	NM_144777	exon24	c.1437delC	p.V479fs	.	.	204.0	15.0	300.0	0.0	.	.	Atlas-Indel
LTF	4057	hgsc.bcm.edu	37	3	46495834	46495834	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	LTF	NM_002343	exon6	c.665delC	p.A222fs	.	.	161.0	11.0	223.0	0.0	.	.	Atlas-Indel
PTCH2	8643	hgsc.bcm.edu	37	1	45293130	45293130	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PTCH2	NM_003738	exon15	c.2316delA	p.P772fs	.	.	189.0	13.0	241.0	0.0	.	.	Atlas-Indel
TRIM27	5987	hgsc.bcm.edu	37	6	28887983	28887983	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	TRIM27	NM_006510	exon3	c.554delA	p.E185fs	.	.	181.0	11.0	249.0	0.0	.	.	Atlas-Indel
SPHK2	56848	hgsc.bcm.edu	37	19	49132347	49132347	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SPHK2	NM_020126	exon7	c.1281delG	p.L427fs	.	.	177.0	11.0	235.0	0.0	.	.	Atlas-Indel
CCDC126	90693	hgsc.bcm.edu	37	7	23650955	23650955	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CCDC126	NM_138771	exon3	c.20delG	p.R7fs	.	.	229.0	16.0	164.0	0.0	.	.	Atlas-Indel
NCKAP5L	57701	hgsc.bcm.edu	37	12	50186232	50186232	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	NCKAP5L	NM_001037806	exon12	c.3790delA	p.M1264fs	.	.	149.0	13.0	165.0	0.0	.	.	Atlas-Indel
IFI27L1	122509	hgsc.bcm.edu	37	14	94568273	94568273	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	IFI27L1	NM_145249	exon4	c.174delC	p.N58fs	.	.	265.0	16.0	319.0	0.0	.	.	Atlas-Indel
USP37	57695	hgsc.bcm.edu	37	2	219353075	219353075	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	USP37	NM_020935	exon15	c.1543delC	p.P515fs	.	.	163.0	10.0	232.0	0.0	.	.	Atlas-Indel
PLB1	151056	hgsc.bcm.edu	37	2	28820879	28820879	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PLB1	NM_153021	exon34	c.2328delA	p.G776fs	.	.	177.0	11.0	225.0	0.0	.	.	Atlas-Indel
MAP4K3	8491	hgsc.bcm.edu	37	2	39552897	39552897	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	MAP4K3	NM_003618	exon11	c.782delG	p.R261fs	.	.	104.0	14.0	98.0	0.0	.	.	Atlas-Indel
ARHGAP39	80728	hgsc.bcm.edu	37	8	145759584	145759584	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ARHGAP39	NM_025251	exon9	c.2618delT	p.V873fs	.	.	235.0	15.0	233.0	0.0	.	.	Atlas-Indel
MID2	11043	hgsc.bcm.edu	37	X	107084012	107084012	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	MID2	NM_012216	exon2	c.116delA	p.D39fs	.	.	158.0	10.0	246.0	0.0	.	.	Atlas-Indel
TEFM	79736	hgsc.bcm.edu	37	17	29231265	29231265	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	.	NM_024683	exon2	c.315delC	p.N105fs	.	.	164.0	10.0	246.0	0.0	.	.	Atlas-Indel
PIWIL3	440822	hgsc.bcm.edu	37	22	25153878	25153878	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PIWIL3	NM_001008496	exon4	c.353delC	p.T118fs	.	.	137.0	12.0	176.0	0.0	.	.	Atlas-Indel
LCE2D	353141	hgsc.bcm.edu	37	1	152636615	152636615	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	LCE2D	NM_178430	exon2	c.33delG	p.Q11fs	.	.	266.0	16.0	181.0	0.0	.	.	Atlas-Indel
SECISBP2L	9728	hgsc.bcm.edu	37	15	49304896	49304896	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SECISBP2L	NM_001193489	exon12	c.1681delG	p.G561fs	.	.	159.0	10.0	190.0	0.0	.	.	Atlas-Indel
CDH10	1008	hgsc.bcm.edu	37	5	24509876	24509876	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CDH10	NM_006727	exon7	c.1056delC	p.N352fs	.	.	117.0	10.0	147.0	0.0	.	.	Atlas-Indel
BST2	684	hgsc.bcm.edu	37	19	17516225	17516225	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	BST2	NM_004335	exon1	c.161delG	p.R54fs	.	.	173.0	11.0	203.0	0.0	.	.	Atlas-Indel
AFF1	4299	hgsc.bcm.edu	37	4	88053466	88053466	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	AFF1	NM_001166693	exon19	c.3216delT	p.C1072X	.	.	220.0	14.0	330.0	0.0	.	.	Atlas-Indel
MIER2	54531	hgsc.bcm.edu	37	19	334468	334468	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	MIER2	NM_017550	exon3	c.176delA	p.E59fs	.	.	131.0	11.0	174.0	0.0	.	.	Atlas-Indel
TMEM200B	399474	hgsc.bcm.edu	37	1	29447542	29447542	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	TMEM200B	NM_001171868	exon2	c.800delA	p.E267fs	.	.	195.0	12.0	240.0	0.0	.	.	Atlas-Indel
IPPK	64768	hgsc.bcm.edu	37	9	95432235	95432235	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	IPPK	NM_022755	exon1	c.37delT	p.Y13fs	.	.	105.0	10.0	167.0	0.0	.	.	Atlas-Indel
WNK1	65125	hgsc.bcm.edu	37	12	989892	989892	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	WNK1	NM_001184985	exon12	c.3617delT	p.F1206fs	.	.	220.0	14.0	317.0	0.0	.	.	Atlas-Indel
GDF5	8200	hgsc.bcm.edu	37	20	34022065	34022065	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	GDF5	NM_000557	exon2	c.1149delA	p.P383fs	.	.	154.0	11.0	193.0	0.0	.	.	Atlas-Indel
CDK12	51755	hgsc.bcm.edu	37	17	37681026	37681026	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CDK12	NM_016507	exon12	c.3194delC	p.T1065fs	.	.	156.0	10.0	226.0	0.0	.	.	Atlas-Indel
C17orf66	256957	hgsc.bcm.edu	37	17	34195732	34195732	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	C17orf66	NM_152781	exon1	c.16delT	p.S6fs	.	.	112.0	10.0	157.0	0.0	.	.	Atlas-Indel
ATF6	22926	hgsc.bcm.edu	37	1	161816357	161816357	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ATF6	NM_007348	exon10	c.1305delG	p.Q435fs	.	.	181.0	11.0	144.0	0.0	.	.	Atlas-Indel
FKBP4	2288	hgsc.bcm.edu	37	12	2907011	2907011	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	FKBP4	NM_002014	exon3	c.366delT	p.I122fs	.	.	187.0	13.0	213.0	0.0	.	.	Atlas-Indel
ARID1B	57492	hgsc.bcm.edu	37	6	157405954	157405954	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ARID1B	NM_020732	exon6	c.2195delC	p.P732fs	.	.	145.0	10.0	199.0	0.0	.	.	Atlas-Indel
CCDC79	283847	hgsc.bcm.edu	37	16	66824575	66824575	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	.	NM_001136505	exon5	c.195delT	p.N65fs	.	.	236.0	16.0	284.0	0.0	.	.	Atlas-Indel
TOPBP1	11073	hgsc.bcm.edu	37	3	133347265	133347265	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	TOPBP1	NM_007027	exon16	c.2746delC	p.L916fs	.	.	202.0	14.0	244.0	0.0	.	.	Atlas-Indel
TOP2A	7153	hgsc.bcm.edu	37	17	38552661	38552661	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	TOP2A	NM_001067	exon28	c.3595delA	p.K1199fs	.	.	120.0	10.0	205.0	0.0	.	.	Atlas-Indel
ZNF814	730051	hgsc.bcm.edu	37	19	58385954	58385954	+	Frame_Shift_Del	DEL	T	T	-	rs74179449		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	.	NM_001144989	exon3	c.805delC	p.H269fs	.	.	184.0	12.0	259.0	0.0	T|0.500;-|0.500	.	Atlas-Indel
DOCK4	9732	hgsc.bcm.edu	37	7	111448882	111448882	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	DOCK4	NM_014705	exon30	c.3162delC	p.N1054fs	.	.	253.0	16.0	288.0	0.0	.	.	Atlas-Indel
SSPO	23145	hgsc.bcm.edu	37	7	149489003	149489003	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	.	NM_198455	exon35	c.5343delT	p.N1781fs	.	.	133.0	10.0	117.0	0.0	.	.	Atlas-Indel
SPTBN4	57731	hgsc.bcm.edu	37	19	41009859	41009859	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SPTBN4	NM_020971	exon12	c.1484delT	p.L495fs	.	.	148.0	10.0	213.0	0.0	.	.	Atlas-Indel
EMC10	284361	hgsc.bcm.edu	37	19	50983927	50983927	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	.	NM_175063	exon5	c.491delA	p.H164fs	.	.	77.0	10.0	94.0	0.0	.	.	Atlas-Indel
ARHGAP5	394	hgsc.bcm.edu	37	14	32560705	32560705	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ARHGAP5	NM_001173	exon2	c.829delG	p.E277fs	.	.	169.0	13.0	215.0	0.0	.	.	Atlas-Indel
PCNXL4	64430	hgsc.bcm.edu	37	14	60587948	60587948	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	.	NM_022495	exon7	c.1274delG	p.R425fs	.	.	180.0	12.0	233.0	0.0	.	.	Atlas-Indel
PLCH1	23007	hgsc.bcm.edu	37	3	155199916	155199916	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PLCH1	NM_001130960	exon23	c.3924delT	p.P1308fs	.	.	198.0	13.0	243.0	0.0	.	.	Atlas-Indel
IFNA16	3449	hgsc.bcm.edu	37	9	21216773	21216773	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	IFNA16	NM_002173	exon1	c.533delC	p.S178X	.	.	312.0	22.0	448.0	0.0	.	.	Atlas-Indel
APEH	327	hgsc.bcm.edu	37	3	49714427	49714427	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	APEH	NM_001640	exon10	c.968delT	p.I323fs	.	.	194.0	13.0	279.0	0.0	.	.	Atlas-Indel
MAPT	4137	hgsc.bcm.edu	37	17	44039763	44039763	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	MAPT	NM_005910	exon2	c.59delT	p.L20fs	.	.	151.0	10.0	151.0	0.0	.	.	Atlas-Indel
CNOT2	4848	hgsc.bcm.edu	37	12	70747643	70747643	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CNOT2	NM_001199302	exon17	c.1570delC	p.R524fs	.	.	175.0	11.0	261.0	0.0	.	.	Atlas-Indel
ASIC5	51802	hgsc.bcm.edu	37	4	156763391	156763391	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	.	NM_017419	exon6	c.978delG	p.K326fs	.	.	182.0	11.0	214.0	0.0	.	.	Atlas-Indel
PLD2	5338	hgsc.bcm.edu	37	17	4719139	4719139	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PLD2	NM_001243108	exon14	c.1364delT	p.L455fs	.	.	228.0	14.0	376.0	0.0	.	.	Atlas-Indel
UNG	7374	hgsc.bcm.edu	37	12	109541376	109541376	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	UNG	NM_080911	exon6	c.760delT	p.W254fs	.	.	147.0	11.0	227.0	0.0	.	.	Atlas-Indel
PDLIM7	9260	hgsc.bcm.edu	37	5	176918124	176918124	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PDLIM7	NM_213636	exon6	c.423delA	p.P141fs	.	.	153.0	10.0	221.0	0.0	.	.	Atlas-Indel
SYNC	81493	hgsc.bcm.edu	37	1	33147421	33147421	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SYNC	NM_001161708	exon4	c.1400delC	p.T467fs	.	.	238.0	15.0	292.0	0.0	.	.	Atlas-Indel
CC2D1A	54862	hgsc.bcm.edu	37	19	14031457	14031457	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CC2D1A	NM_017721	exon13	c.1443delG	p.A481fs	.	.	182.0	11.0	209.0	0.0	.	.	Atlas-Indel
SNTN	132203	hgsc.bcm.edu	37	3	63645488	63645488	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SNTN	NM_001080537	exon3	c.232delG	p.E78fs	.	.	161.0	10.0	206.0	0.0	.	.	Atlas-Indel
SEC23IP	11196	hgsc.bcm.edu	37	10	121675303	121675303	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SEC23IP	NM_007190	exon8	c.1445delA	p.H482fs	.	.	99.0	10.0	107.0	0.0	.	.	Atlas-Indel
LRBA	987	hgsc.bcm.edu	37	4	151789357	151789357	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	LRBA	NM_006726	exon21	c.2551delA	p.N851fs	.	.	161.0	10.0	215.0	0.0	.	.	Atlas-Indel
PARD3B	117583	hgsc.bcm.edu	37	2	206305272	206305272	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PARD3B	NM_152526	exon19	c.2733delT	p.S911fs	.	.	210.0	14.0	293.0	0.0	.	.	Atlas-Indel
KIF20A	10112	hgsc.bcm.edu	37	5	137522908	137522908	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	KIF20A	NM_005733	exon19	c.2478delC	p.A826fs	.	.	139.0	10.0	175.0	0.0	.	.	Atlas-Indel
CCT7	10574	hgsc.bcm.edu	37	2	73471802	73471802	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CCT7	NM_006429	exon6	c.576delT	p.L192fs	.	.	169.0	11.0	241.0	0.0	.	.	Atlas-Indel
EVPL	2125	hgsc.bcm.edu	37	17	74018287	74018287	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	EVPL	NM_001988	exon6	c.629delA	p.Q210fs	.	.	164.0	10.0	130.0	0.0	.	.	Atlas-Indel
PRR22	163154	hgsc.bcm.edu	37	19	5783634	5783634	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PRR22	NM_001134316	exon3	c.625delG	p.D209fs	.	.	182.0	11.0	263.0	0.0	.	.	Atlas-Indel
ATG2A	23130	hgsc.bcm.edu	37	11	64673130	64673130	+	Splice_Site	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ATG2A	NM_015104	exon25	c.3372-2C>-	.	.	.	176.0	11.0	215.0	0.0	.	.	Atlas-Indel
SOX2	6657	hgsc.bcm.edu	37	3	181431356	181431356	+	RNA	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SOX2	.	.	.	.	.	.	123.0	11.0	135.0	0.0	.	.	Atlas-Indel
BRAP	8315	hgsc.bcm.edu	37	12	112082345	112082345	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	BRAP	NM_006768	exon12	c.1438delG	p.V480fs	.	.	186.0	13.0	236.0	0.0	.	.	Atlas-Indel
CCDC38	120935	hgsc.bcm.edu	37	12	96275288	96275288	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CCDC38	NM_182496	exon11	c.966delA	p.L322fs	.	.	194.0	13.0	244.0	0.0	.	.	Atlas-Indel
NEXN	91624	hgsc.bcm.edu	37	1	78401592	78401592	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	NEXN	NM_144573	exon11	c.1335delT	p.A445fs	.	.	193.0	12.0	265.0	0.0	.	.	Atlas-Indel
ARID4A	5926	hgsc.bcm.edu	37	14	58796746	58796746	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ARID4A	NM_002892	exon11	c.764delT	p.L255X	.	.	167.0	11.0	195.0	0.0	.	.	Atlas-Indel
PDIA5	10954	hgsc.bcm.edu	37	3	122869147	122869147	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PDIA5	NM_006810	exon14	c.1208delT	p.V403fs	.	.	144.0	10.0	141.0	0.0	.	.	Atlas-Indel
NUDCD3	23386	hgsc.bcm.edu	37	7	44425624	44425624	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	NUDCD3	NM_015332	exon6	c.1073delC	p.A358fs	.	.	183.0	11.0	124.0	0.0	.	.	Atlas-Indel
NAGS	162417	hgsc.bcm.edu	37	17	42084998	42084998	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	NAGS	NM_153006	exon6	c.1307delT	p.L436fs	.	.	153.0	11.0	254.0	0.0	.	.	Atlas-Indel
TRMT11	60487	hgsc.bcm.edu	37	6	126332450	126332450	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	TRMT11	NM_001031712	exon9	c.811delA	p.R271fs	.	.	140.0	10.0	165.0	0.0	.	.	Atlas-Indel
CIB3	117286	hgsc.bcm.edu	37	19	16275654	16275654	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CIB3	NM_054113	exon5	c.418delC	p.L140X	.	.	226.0	16.0	243.0	0.0	.	.	Atlas-Indel
CORO2A	7464	hgsc.bcm.edu	37	9	100890927	100890927	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CORO2A	NM_003389	exon9	c.1043delG	p.S348fs	.	.	178.0	12.0	203.0	0.0	.	.	Atlas-Indel
WDR93	56964	hgsc.bcm.edu	37	15	90278766	90278766	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	WDR93	NM_020212	exon14	c.1589delT	p.V530fs	.	.	137.0	10.0	156.0	0.0	.	.	Atlas-Indel
IDI1	3422	hgsc.bcm.edu	37	10	1087256	1087256	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	IDI1	NM_004508	exon5	c.727delG	p.A243fs	.	.	219.0	14.0	255.0	0.0	.	.	Atlas-Indel
NUMBL	9253	hgsc.bcm.edu	37	19	41174028	41174028	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	NUMBL	NM_004756	exon10	c.1176delT	p.G392fs	.	.	142.0	11.0	148.0	0.0	.	.	Atlas-Indel
STRAP	11171	hgsc.bcm.edu	37	12	16047053	16047053	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	STRAP	NM_007178	exon5	c.475delC	p.L159fs	.	.	171.0	14.0	256.0	0.0	.	.	Atlas-Indel
OPA1	4976	hgsc.bcm.edu	37	3	193332740	193332740	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	OPA1	NM_130832	exon2	c.260delA	p.N87fs	.	.	175.0	11.0	240.0	0.0	.	.	Atlas-Indel
SEC31B	25956	hgsc.bcm.edu	37	10	102249484	102249484	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SEC31B	NM_015490	exon22	c.3001delA	p.R1001fs	.	.	142.0	10.0	178.0	0.0	.	.	Atlas-Indel
MATR3	9782	hgsc.bcm.edu	37	5	138657644	138657644	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	MATR3	NM_018834	exon10	c.1659delG	p.L553fs	.	.	135.0	10.0	152.0	0.0	.	.	Atlas-Indel
SLC12A7	10723	hgsc.bcm.edu	37	5	1078065	1078065	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SLC12A7	NM_006598	exon12	c.1513delT	p.W505fs	.	.	189.0	13.0	173.0	0.0	.	.	Atlas-Indel
TDRD7	23424	hgsc.bcm.edu	37	9	100203999	100203999	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	TDRD7	NM_014290	exon6	c.696delT	p.Y232X	.	.	191.0	12.0	238.0	0.0	.	.	Atlas-Indel
SLC12A1	6557	hgsc.bcm.edu	37	15	48527143	48527143	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SLC12A1	NM_001184832	exon9	c.1156delA	p.I386fs	.	.	219.0	15.0	258.0	0.0	.	.	Atlas-Indel
MMP16	4325	hgsc.bcm.edu	37	8	89179946	89179946	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	MMP16	NM_005941	exon4	c.662delA	p.H221fs	.	.	194.0	14.0	166.0	0.0	.	.	Atlas-Indel
PROX1	5629	hgsc.bcm.edu	37	1	214209037	214209037	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PROX1	NM_001270616	exon5	c.2073delG	p.E691fs	.	.	267.0	17.0	249.0	0.0	.	.	Atlas-Indel
EPHA5	2044	hgsc.bcm.edu	37	4	66467573	66467573	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	EPHA5	NM_182472	exon3	c.697delT	p.C233fs	.	.	128.0	10.0	175.0	0.0	.	.	Atlas-Indel
SORBS2	8470	hgsc.bcm.edu	37	4	186598269	186598273	+	Frame_Shift_Del	DEL	TCCTG	TCCTG	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	TCCTG	TCCTG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SORBS2	NM_001145673	exon5	c.371_375del	p.124_125del	.	.	126.0	41.0	167.0	0.0	.	.	Atlas-Indel,Pindel
VPS13D	55187	hgsc.bcm.edu	37	1	12414184	12414184	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	VPS13D	NM_015378	exon47	c.9584delA	p.D3195fs	.	.	195.0	14.0	271.0	0.0	.	.	Atlas-Indel
PTPRT	11122	hgsc.bcm.edu	37	20	40944372	40944372	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PTPRT	NM_007050	exon12	c.2131delG	p.A711fs	.	.	198.0	12.0	245.0	0.0	.	.	Atlas-Indel
GIGYF2	26058	hgsc.bcm.edu	37	2	233659657	233659657	+	Splice_Site	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	GIGYF2	NM_001103148	exon12	c.1461+2A>-	.	.	.	139.0	10.0	200.0	0.0	.	.	Atlas-Indel
MYH14	79784	hgsc.bcm.edu	37	19	50771494	50771494	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	MYH14	NM_001145809	exon24	c.2902delC	p.R968fs	.	.	161.0	10.0	219.0	0.0	.	.	Atlas-Indel
AEBP2	121536	hgsc.bcm.edu	37	12	19615541	19615541	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	AEBP2	NM_001114176	exon2	c.768delC	p.S256fs	.	.	147.0	11.0	229.0	0.0	.	.	Atlas-Indel
COL11A1	1301	hgsc.bcm.edu	37	1	103364549	103364549	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	COL11A1	NM_080629	exon55	c.4125delT	p.G1375fs	.	.	171.0	13.0	174.0	0.0	.	.	Atlas-Indel
OR10H1	26539	hgsc.bcm.edu	37	19	15917904	15917904	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	OR10H1	NM_013940	exon1	c.945delT	p.N315fs	.	.	178.0	11.0	250.0	0.0	.	.	Atlas-Indel
MTBP	27085	hgsc.bcm.edu	37	8	121528183	121528183	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	MTBP	NM_022045	exon18	c.1997delG	p.R666fs	.	.	177.0	11.0	167.0	0.0	.	.	Atlas-Indel
GALNTL5	168391	hgsc.bcm.edu	37	7	151704993	151704993	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	GALNTL5	NM_145292	exon7	c.989delA	p.D330fs	.	.	155.0	10.0	173.0	0.0	.	.	Atlas-Indel
GATA1	2623	hgsc.bcm.edu	37	X	48652397	48652397	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	GATA1	NM_002049	exon6	c.1067delG	p.G356fs	.	.	159.0	10.0	179.0	0.0	.	.	Atlas-Indel
UBR2	23304	hgsc.bcm.edu	37	6	42620286	42620286	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	UBR2	NM_015255	exon25	c.2671delA	p.I891fs	.	.	183.0	13.0	240.0	0.0	.	.	Atlas-Indel
ZHX1	11244	hgsc.bcm.edu	37	8	124266657	124266657	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ZHX1	NM_001017926	exon3	c.1531delT	p.W511fs	.	.	210.0	14.0	192.0	0.0	.	.	Atlas-Indel
DOCK4	9732	hgsc.bcm.edu	37	7	111368605	111368605	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	DOCK4	NM_014705	exon52	c.5627delT	p.L1876fs	.	.	140.0	11.0	104.0	0.0	.	.	Atlas-Indel
BTRC	8945	hgsc.bcm.edu	37	10	103310472	103310472	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	BTRC	NM_033637	exon14	c.1672delG	p.V558fs	.	.	210.0	15.0	273.0	0.0	.	.	Atlas-Indel
TFPI	7035	hgsc.bcm.edu	37	2	188349646	188349646	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	TFPI	NM_001032281	exon5	c.428delA	p.Y143fs	.	.	165.0	10.0	246.0	0.0	.	.	Atlas-Indel
UGT2B28	54490	hgsc.bcm.edu	37	4	70156317	70156317	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	UGT2B28	NM_053039	exon5	c.1097delC	p.P366fs	.	.	185.0	12.0	210.0	0.0	.	.	Atlas-Indel
TSPAN12	23554	hgsc.bcm.edu	37	7	120450526	120450526	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	TSPAN12	NM_012338	exon6	c.460delC	p.Q154fs	.	.	154.0	11.0	164.0	0.0	.	.	Atlas-Indel
EFHA2	286097	hgsc.bcm.edu	37	8	16939226	16939226	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	EFHA2	NM_181723	exon5	c.670delC	p.L224fs	.	.	110.0	13.0	171.0	0.0	.	.	Atlas-Indel
SCN1A	6323	hgsc.bcm.edu	37	2	166903299	166903299	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SCN1A	NM_001165964	exon9	c.1359delG	p.K453fs	.	.	172.0	12.0	244.0	0.0	.	.	Atlas-Indel
CLIP3	25999	hgsc.bcm.edu	37	19	36523228	36523228	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CLIP3	NM_001199570	exon1	c.33delG	p.P11fs	.	.	149.0	11.0	153.0	0.0	.	.	Atlas-Indel
FANCG	2189	hgsc.bcm.edu	37	9	35078176	35078176	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	FANCG	NM_004629	exon4	c.473delA	p.D158fs	.	.	172.0	11.0	272.0	0.0	.	.	Atlas-Indel
PRCP	5547	hgsc.bcm.edu	37	11	82536121	82536121	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PRCP	NM_199418	exon10	c.1382delA	p.D461fs	.	.	171.0	11.0	244.0	0.0	.	.	Atlas-Indel
DLG2	1740	hgsc.bcm.edu	37	11	83183770	83183770	+	Splice_Site	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	DLG2	NM_001364	exon19	c.2029+1A>-	.	.	.	161.0	10.0	219.0	0.0	.	.	Atlas-Indel
SIKE1	80143	hgsc.bcm.edu	37	1	115321811	115321811	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SIKE1	NM_001102396	exon3	c.373delG	p.A125fs	.	.	150.0	11.0	195.0	0.0	.	.	Atlas-Indel
PLBD1	79887	hgsc.bcm.edu	37	12	14693810	14693810	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PLBD1	NM_024829	exon4	c.447delT	p.N149fs	.	.	165.0	12.0	209.0	0.0	.	.	Atlas-Indel
APOF	319	hgsc.bcm.edu	37	12	56755066	56755066	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	.	NM_001638	exon2	c.925delT	p.W309fs	.	.	192.0	12.0	251.0	0.0	.	.	Atlas-Indel
RSPH1	89765	hgsc.bcm.edu	37	21	43905780	43905780	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	RSPH1	NM_080860	exon5	c.501delT	p.N167fs	.	.	199.0	12.0	267.0	0.0	.	.	Atlas-Indel
FAT1	2195	hgsc.bcm.edu	37	4	187510197	187510197	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	FAT1	NM_005245	exon27	c.13317delA	p.P4439fs	.	.	229.0	15.0	224.0	0.0	.	.	Atlas-Indel
FKBP11	51303	hgsc.bcm.edu	37	12	49318434	49318434	+	Splice_Site	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	FKBP11	NM_016594	exon4	c.196-2C>-	.	.	.	111.0	10.0	149.0	0.0	.	.	Atlas-Indel
ARHGAP30	257106	hgsc.bcm.edu	37	1	161017601	161017601	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ARHGAP30	NM_001025598	exon12	c.3211delA	p.R1071fs	.	.	203.0	13.0	116.0	0.0	.	.	Atlas-Indel
ADAMTS19	171019	hgsc.bcm.edu	37	5	128864241	128864241	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ADAMTS19	NM_133638	exon6	c.1180delG	p.E394fs	.	.	179.0	11.0	234.0	0.0	.	.	Atlas-Indel
PVRL3	25945	hgsc.bcm.edu	37	3	110852954	110852954	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PVRL3	NM_015480	exon6	c.1541delT	p.L514fs	.	.	171.0	11.0	234.0	0.0	.	.	Atlas-Indel
EPPK1	83481	hgsc.bcm.edu	37	8	144946981	144946981	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	EPPK1	NM_031308	exon1	c.442delC	p.Q148fs	.	.	172.0	11.0	191.0	0.0	.	.	Atlas-Indel
BCL9	607	hgsc.bcm.edu	37	1	147091647	147091647	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	BCL9	NM_004326	exon8	c.1685delT	p.L562fs	.	.	163.0	10.0	121.0	0.0	.	.	Atlas-Indel
PRDM6	93166	hgsc.bcm.edu	37	5	122425749	122425749	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	.	NM_001136239	exon2	c.39delC	p.L13fs	.	.	170.0	12.0	254.0	0.0	.	.	Atlas-Indel
PUM1	9698	hgsc.bcm.edu	37	1	31418315	31418315	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PUM1	NM_001020658	exon18	c.2873delA	p.E958fs	.	.	136.0	10.0	199.0	0.0	.	.	Atlas-Indel
IFT172	26160	hgsc.bcm.edu	37	2	27707958	27707958	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	IFT172	NM_015662	exon3	c.224delC	p.S75fs	.	.	213.0	13.0	254.0	0.0	.	.	Atlas-Indel
BHLHA15	168620	hgsc.bcm.edu	37	7	97841927	97841927	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	BHLHA15	NM_177455	exon1	c.305delT	p.I102fs	.	.	209.0	13.0	218.0	0.0	.	.	Atlas-Indel
RRN3	54700	hgsc.bcm.edu	37	16	15162040	15162040	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	RRN3	NM_018427	exon15	c.1540delG	p.A514fs	.	.	420.0	28.0	486.0	0.0	.	.	Atlas-Indel
ADAMTS3	9508	hgsc.bcm.edu	37	4	73205236	73205236	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ADAMTS3	NM_014243	exon5	c.837delC	p.N279fs	.	.	181.0	11.0	236.0	0.0	.	.	Atlas-Indel
PAN2	9924	hgsc.bcm.edu	37	12	56716892	56716892	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PAN2	NM_001127460	exon17	c.2460delC	p.N820fs	.	.	150.0	10.0	188.0	0.0	.	.	Atlas-Indel
ACTN3	89	hgsc.bcm.edu	37	11	66330266	66330266	+	Splice_Site	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ACTN3	NM_001258371	exon20	c.2518-2G>-	.	.	.	227.0	15.0	316.0	0.0	.	.	Atlas-Indel
CLEC4A	50856	hgsc.bcm.edu	37	12	8289428	8289428	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CLEC4A	NM_016184	exon5	c.494delT	p.V165fs	.	.	176.0	11.0	274.0	0.0	.	.	Atlas-Indel
PRRC2A	7916	hgsc.bcm.edu	37	6	31602310	31602310	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PRRC2A	NM_004638	exon20	c.4910delC	p.P1637fs	.	.	110.0	10.0	125.0	0.0	.	.	Atlas-Indel
SPAG17	200162	hgsc.bcm.edu	37	1	118583387	118583387	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SPAG17	NM_206996	exon22	c.3133delC	p.Q1045fs	.	.	200.0	13.0	284.0	0.0	.	.	Atlas-Indel
ASCC3	10973	hgsc.bcm.edu	37	6	101086535	101086535	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ASCC3	NM_006828	exon25	c.4065delG	p.K1355fs	.	.	165.0	11.0	233.0	0.0	.	.	Atlas-Indel
SLC39A12	221074	hgsc.bcm.edu	37	10	18331679	18331679	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SLC39A12	NM_001145195	exon13	c.1992delG	p.M664fs	.	.	146.0	10.0	151.0	0.0	.	.	Atlas-Indel
LMBRD1	55788	hgsc.bcm.edu	37	6	70500277	70500277	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	LMBRD1	NM_018368	exon2	c.158delC	p.S53fs	.	.	123.0	10.0	186.0	0.0	.	.	Atlas-Indel
CEP128	145508	hgsc.bcm.edu	37	14	81307070	81307070	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CEP128	NM_152446	exon9	c.806delC	p.A269fs	.	.	180.0	11.0	209.0	0.0	.	.	Atlas-Indel
EDEM3	80267	hgsc.bcm.edu	37	1	184680896	184680896	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	EDEM3	NM_025191	exon15	c.1653delT	p.N551fs	.	.	163.0	11.0	130.0	0.0	.	.	Atlas-Indel
MAP3K4	4216	hgsc.bcm.edu	37	6	161532936	161532936	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	MAP3K4	NM_005922	exon24	c.4464delC	p.L1488fs	.	.	298.0	18.0	392.0	0.0	.	.	Atlas-Indel
FPGT-TNNI3K	100526835	hgsc.bcm.edu	37	1	74901809	74901809	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	.	NM_001199327	exon20	c.2120delA	p.D707fs	.	.	235.0	16.0	272.0	0.0	.	.	Atlas-Indel
OR5T2	219464	hgsc.bcm.edu	37	11	55999651	55999651	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	OR5T2	NM_001004746	exon1	c.1012delG	p.D338fs	.	.	155.0	10.0	160.0	0.0	.	.	Atlas-Indel
ULK2	9706	hgsc.bcm.edu	37	17	19729453	19729453	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ULK2	NM_001142610	exon11	c.835delT	p.S279fs	.	.	210.0	14.0	292.0	0.0	.	.	Atlas-Indel
RBM33	155435	hgsc.bcm.edu	37	7	155537920	155537920	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	RBM33	NM_053043	exon14	c.2602delC	p.Q868fs	.	.	225.0	15.0	258.0	0.0	.	.	Atlas-Indel
TOPBP1	11073	hgsc.bcm.edu	37	3	133320122	133320122	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	TOPBP1	NM_007027	exon28	c.4542delT	p.N1514fs	.	.	188.0	16.0	250.0	0.0	.	.	Atlas-Indel
TLK1	9874	hgsc.bcm.edu	37	2	171923383	171923383	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	TLK1	NM_001136555	exon1	c.12delA	p.L4fs	.	.	167.0	11.0	229.0	0.0	.	.	Atlas-Indel
TULP4	56995	hgsc.bcm.edu	37	6	158923160	158923160	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	TULP4	NM_020245	exon13	c.2464delG	p.A822fs	.	.	147.0	11.0	176.0	0.0	.	.	Atlas-Indel
RBM46	166863	hgsc.bcm.edu	37	4	155720297	155720297	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	RBM46	NM_144979	exon4	c.982delG	p.E328fs	.	.	198.0	12.0	226.0	0.0	.	.	Atlas-Indel
ABHD5	51099	hgsc.bcm.edu	37	3	43753215	43753215	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ABHD5	NM_016006	exon4	c.520delA	p.I174fs	.	.	151.0	11.0	211.0	0.0	.	.	Atlas-Indel
ABCF2	10061	hgsc.bcm.edu	37	7	150923507	150923507	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ABCF2	NM_005692	exon2	c.39delG	p.K13fs	.	.	202.0	13.0	202.0	0.0	.	.	Atlas-Indel
PROCA1	147011	hgsc.bcm.edu	37	17	27030897	27030897	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PROCA1	NM_152465	exon4	c.691delG	p.A231fs	.	.	237.0	15.0	311.0	0.0	.	.	Atlas-Indel
RUFY1	80230	hgsc.bcm.edu	37	5	179004090	179004090	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	RUFY1	NM_025158	exon6	c.842delA	p.D281fs	.	.	159.0	10.0	182.0	0.0	.	.	Atlas-Indel
MFAP1	4236	hgsc.bcm.edu	37	15	44109627	44109627	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	MFAP1	NM_005926	exon2	c.100delG	p.V34X	.	.	378.0	23.0	482.0	0.0	.	.	Atlas-Indel
FASTK	10922	hgsc.bcm.edu	37	7	150775131	150775131	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	FASTK	NM_006712	exon5	c.875delT	p.L292fs	.	.	187.0	12.0	196.0	0.0	.	.	Atlas-Indel
ATP1A3	478	hgsc.bcm.edu	37	19	42479905	42479905	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ATP1A3	NM_001256214	exon16	c.2179delG	p.A727fs	.	.	165.0	12.0	215.0	0.0	.	.	Atlas-Indel
UPF1	5976	hgsc.bcm.edu	37	19	18971165	18971165	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	UPF1	NM_002911	exon16	c.2217delG	p.W739fs	.	.	175.0	11.0	269.0	0.0	.	.	Atlas-Indel
ITGA11	22801	hgsc.bcm.edu	37	15	68624271	68624271	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ITGA11	NM_001004439	exon14	c.1697delT	p.L566fs	.	.	164.0	10.0	249.0	0.0	.	.	Atlas-Indel
PHLPP2	23035	hgsc.bcm.edu	37	16	71724608	71724608	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PHLPP2	NM_015020	exon3	c.424delC	p.P142fs	.	.	144.0	10.0	181.0	0.0	.	.	Atlas-Indel
CCDC169	728591	hgsc.bcm.edu	37	13	36805370	36805370	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	.	NM_001144981	exon8	c.606delG	p.K202fs	.	.	219.0	14.0	332.0	0.0	.	.	Atlas-Indel
ABCB8	11194	hgsc.bcm.edu	37	7	150742395	150742395	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ABCB8	NM_007188	exon16	c.2115delC	p.P705fs	.	.	159.0	10.0	132.0	0.0	.	.	Atlas-Indel
NEBL	10529	hgsc.bcm.edu	37	10	21178796	21178796	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	NEBL	NM_006393	exon3	c.237delT	p.N79fs	.	.	159.0	11.0	217.0	0.0	.	.	Atlas-Indel
BAZ2A	11176	hgsc.bcm.edu	37	12	56994135	56994135	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	BAZ2A	NM_013449	exon24	c.4749delG	p.L1583fs	.	.	129.0	10.0	169.0	0.0	.	.	Atlas-Indel
PDILT	204474	hgsc.bcm.edu	37	16	20387460	20387460	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PDILT	NM_174924	exon4	c.474delG	p.L158fs	.	.	132.0	10.0	221.0	0.0	.	.	Atlas-Indel
CDC34	997	hgsc.bcm.edu	37	19	532070	532070	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CDC34	NM_004359	exon1	c.138delC	p.F46fs	.	.	136.0	10.0	221.0	0.0	.	.	Atlas-Indel
IGF1R	3480	hgsc.bcm.edu	37	15	99459962	99459962	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	IGF1R	NM_000875	exon10	c.2057delA	p.N686fs	.	.	165.0	10.0	220.0	0.0	.	.	Atlas-Indel
TSPYL6	388951	hgsc.bcm.edu	37	2	54482889	54482889	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	TSPYL6	NM_001003937	exon1	c.401delC	p.A134fs	.	.	104.0	10.0	116.0	0.0	.	.	Atlas-Indel
TFEB	7942	hgsc.bcm.edu	37	6	41655721	41655721	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	TFEB	NM_001167827	exon5	c.638delA	p.Q213fs	.	.	205.0	14.0	253.0	0.0	.	.	Atlas-Indel
FAM8A1	51439	hgsc.bcm.edu	37	6	17608468	17608468	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	FAM8A1	NM_016255	exon5	c.1139delC	p.S380fs	.	.	172.0	11.0	211.0	0.0	.	.	Atlas-Indel
PRG4	10216	hgsc.bcm.edu	37	1	186282017	186282017	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PRG4	NM_005807	exon12	c.4107delC	p.A1369fs	.	.	193.0	13.0	147.0	0.0	.	.	Atlas-Indel
RBFOX2	23543	hgsc.bcm.edu	37	22	36161472	36161472	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	RBFOX2	NM_001082578	exon7	c.816delT	p.N272fs	.	.	183.0	11.0	243.0	0.0	.	.	Atlas-Indel
TRPC1	7220	hgsc.bcm.edu	37	3	142443550	142443550	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	TRPC1	NM_001251845	exon1	c.148delC	p.L50fs	.	.	121.0	10.0	168.0	0.0	.	.	Atlas-Indel
CASC5	57082	hgsc.bcm.edu	37	15	40920324	40920324	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CASC5	NM_170589	exon12	c.5510delT	p.I1837fs	.	.	172.0	11.0	272.0	0.0	.	.	Atlas-Indel
SSR2	6746	hgsc.bcm.edu	37	1	155979390	155979390	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SSR2	NM_003145	exon6	c.494delT	p.L165fs	.	.	287.0	18.0	246.0	0.0	.	.	Atlas-Indel
APOL2	23780	hgsc.bcm.edu	37	22	36623560	36623560	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	APOL2	NM_030882	exon5	c.905delC	p.A302fs	.	.	166.0	10.0	266.0	0.0	.	.	Atlas-Indel
TMEM39B	55116	hgsc.bcm.edu	37	1	32542775	32542775	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	TMEM39B	NM_018056	exon5	c.445delA	p.R149fs	.	.	152.0	11.0	225.0	0.0	.	.	Atlas-Indel
DUOX1	53905	hgsc.bcm.edu	37	15	45446158	45446158	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	DUOX1	NM_017434	exon28	c.3533delT	p.L1178fs	.	.	152.0	11.0	182.0	0.0	.	.	Atlas-Indel
PIK3CB	5291	hgsc.bcm.edu	37	3	138461437	138461437	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PIK3CB	NM_006219	exon3	c.585delA	p.G195fs	.	.	151.0	12.0	216.0	0.0	.	.	Atlas-Indel
ZNF689	115509	hgsc.bcm.edu	37	16	30616564	30616564	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ZNF689	NM_138447	exon3	c.525delG	p.K175fs	.	.	166.0	11.0	235.0	0.0	.	.	Atlas-Indel
ENG	2022	hgsc.bcm.edu	37	9	130592021	130592021	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ENG	NM_001114753	exon3	c.306delC	p.N102fs	.	.	157.0	10.0	204.0	0.0	.	.	Atlas-Indel
VPS39	23339	hgsc.bcm.edu	37	15	42480005	42480005	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	VPS39	NM_015289	exon6	c.393delG	p.K131fs	.	.	162.0	11.0	239.0	0.0	.	.	Atlas-Indel
MLXIP	22877	hgsc.bcm.edu	37	12	122614541	122614541	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	MLXIP	NM_014938	exon6	c.791delT	p.V264fs	.	.	157.0	10.0	216.0	0.0	.	.	Atlas-Indel
SGCA	6442	hgsc.bcm.edu	37	17	48245832	48245832	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SGCA	NM_001135697	exon5	c.482delT	p.L161fs	.	.	163.0	12.0	232.0	0.0	.	.	Atlas-Indel
THG1L	54974	hgsc.bcm.edu	37	5	157160024	157160024	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	THG1L	NM_017872	exon2	c.339delG	p.R113fs	.	.	171.0	11.0	247.0	0.0	.	.	Atlas-Indel
ZYG11B	79699	hgsc.bcm.edu	37	1	53287272	53287272	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ZYG11B	NM_024646	exon14	c.2205delT	p.C735X	.	.	222.0	15.0	276.0	0.0	.	.	Atlas-Indel
COL11A2	1302	hgsc.bcm.edu	37	6	33136315	33136315	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	COL11A2	NM_080680	exon54	c.3942delA	p.P1314fs	.	.	119.0	10.0	142.0	0.0	.	.	Atlas-Indel
SLC13A2	9058	hgsc.bcm.edu	37	17	26817514	26817514	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SLC13A2	NM_001145975	exon3	c.420delC	p.F140fs	.	.	148.0	11.0	223.0	0.0	.	.	Atlas-Indel
STXBP5	134957	hgsc.bcm.edu	37	6	147648266	147648266	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	STXBP5	NM_139244	exon18	c.1933delG	p.V645fs	.	.	140.0	12.0	198.0	0.0	.	.	Atlas-Indel
PMS1	5378	hgsc.bcm.edu	37	2	190719401	190719401	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PMS1	NM_001128144	exon9	c.1402delG	p.E468fs	.	.	121.0	10.0	169.0	0.0	.	.	Atlas-Indel
NOM1	64434	hgsc.bcm.edu	37	7	156755794	156755794	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	NOM1	NM_138400	exon6	c.1835delT	p.V612fs	.	.	155.0	12.0	129.0	0.0	.	.	Atlas-Indel
LAMB1	3912	hgsc.bcm.edu	37	7	107638926	107638926	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	LAMB1	NM_002291	exon4	c.226delT	p.C76fs	.	.	178.0	11.0	191.0	0.0	.	.	Atlas-Indel
CRYBB3	1417	hgsc.bcm.edu	37	22	25603032	25603032	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CRYBB3	NM_004076	exon6	c.488delT	p.L163fs	.	.	139.0	10.0	212.0	0.0	.	.	Atlas-Indel
ITPR2	3709	hgsc.bcm.edu	37	12	26640046	26640046	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ITPR2	NM_002223	exon40	c.5510delG	p.R1837fs	.	.	293.0	19.0	442.0	0.0	.	.	Atlas-Indel
MGA	23269	hgsc.bcm.edu	37	15	42054541	42054541	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	MGA	NM_001164273	exon22	c.7724delG	p.R2575fs	.	.	155.0	10.0	248.0	0.0	.	.	Atlas-Indel
FAM83B	222584	hgsc.bcm.edu	37	6	54806060	54806060	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	FAM83B	NM_001010872	exon5	c.2290delT	p.S764fs	.	.	77.0	10.0	126.0	0.0	.	.	Atlas-Indel
CYP4B1	1580	hgsc.bcm.edu	37	1	47284400	47284400	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CYP4B1	NM_001099772	exon12	c.1452delG	p.L484fs	.	.	166.0	10.0	245.0	0.0	.	.	Atlas-Indel
CPOX	1371	hgsc.bcm.edu	37	3	98312028	98312028	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CPOX	NM_000097	exon1	c.322delA	p.T108fs	.	.	104.0	10.0	112.0	0.0	.	.	Atlas-Indel
EYS	346007	hgsc.bcm.edu	37	6	65301367	65301367	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	EYS	NM_001142800	exon26	c.4394delC	p.A1465fs	.	.	157.0	10.0	266.0	0.0	.	.	Atlas-Indel
RAPGEF4	11069	hgsc.bcm.edu	37	2	173866030	173866030	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	RAPGEF4	NM_007023	exon17	c.1615delG	p.V539fs	.	.	118.0	10.0	215.0	0.0	.	.	Atlas-Indel
BTBD8	284697	hgsc.bcm.edu	37	1	92568057	92568057	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	BTBD8	NM_183242	exon3	c.374delT	p.I125fs	.	.	150.0	12.0	180.0	0.0	.	.	Atlas-Indel
NPC1	4864	hgsc.bcm.edu	37	18	21141327	21141327	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	NPC1	NM_000271	exon5	c.629delC	p.S210X	.	.	127.0	10.0	180.0	0.0	.	.	Atlas-Indel
FAM210A	125228	hgsc.bcm.edu	37	18	13681751	13681751	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	.	NM_001098801	exon3	c.327delG	p.K109fs	.	.	219.0	14.0	205.0	0.0	.	.	Atlas-Indel
SLIT1	6585	hgsc.bcm.edu	37	10	98766401	98766401	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SLIT1	NM_003061	exon32	c.3419delC	p.A1140fs	.	.	137.0	10.0	190.0	0.0	.	.	Atlas-Indel
ABCA5	23461	hgsc.bcm.edu	37	17	67285378	67285378	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ABCA5	NM_018672	exon13	c.1843delT	p.L615X	.	.	199.0	12.0	217.0	0.0	.	.	Atlas-Indel
MPV17L2	84769	hgsc.bcm.edu	37	19	18305819	18305819	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	MPV17L2	NM_032683	exon4	c.486delG	p.V162fs	.	.	137.0	10.0	190.0	0.0	.	.	Atlas-Indel
NAV3	89795	hgsc.bcm.edu	37	12	78443808	78443808	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	NAV3	NM_014903	exon10	c.2058delT	p.V686fs	.	.	153.0	13.0	177.0	0.0	.	.	Atlas-Indel
SUV420H1	51111	hgsc.bcm.edu	37	11	67934514	67934514	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SUV420H1	NM_017635	exon10	c.1110delT	p.N370fs	.	.	206.0	15.0	254.0	0.0	.	.	Atlas-Indel
STH	246744	hgsc.bcm.edu	37	17	44076686	44076686	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	.	NM_001007532	exon1	c.40delG	p.A14fs	.	.	205.0	13.0	288.0	0.0	.	.	Atlas-Indel
RARB	5915	hgsc.bcm.edu	37	3	25470337	25470337	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	RARB	NM_000965	exon1	c.114delT	p.S38fs	.	.	142.0	10.0	213.0	0.0	.	.	Atlas-Indel
ZNF142	7701	hgsc.bcm.edu	37	2	219509322	219509322	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ZNF142	NM_001105537	exon8	c.1918delC	p.P640fs	.	.	158.0	11.0	179.0	0.0	.	.	Atlas-Indel
PTCD2	79810	hgsc.bcm.edu	37	5	71648518	71648518	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PTCD2	NM_024754	exon9	c.878delT	p.L293fs	.	.	199.0	12.0	301.0	0.0	.	.	Atlas-Indel
PDZD4	57595	hgsc.bcm.edu	37	X	153073936	153073936	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PDZD4	NM_032512	exon2	c.176delA	p.D59fs	.	.	162.0	10.0	241.0	0.0	.	.	Atlas-Indel
LAMA5	3911	hgsc.bcm.edu	37	20	60894843	60894843	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	LAMA5	NM_005560	exon51	c.6769delA	p.T2257fs	.	.	104.0	10.0	124.0	0.0	.	.	Atlas-Indel
EME1	146956	hgsc.bcm.edu	37	17	48452975	48452975	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	EME1	NM_152463	exon2	c.405delG	p.W135X	.	.	173.0	11.0	257.0	0.0	.	.	Atlas-Indel
RIPK3	11035	hgsc.bcm.edu	37	14	24808407	24808407	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	RIPK3	NM_006871	exon3	c.286delT	p.F96fs	.	.	162.0	10.0	195.0	0.0	.	.	Atlas-Indel
FAM71A	149647	hgsc.bcm.edu	37	1	212799568	212799568	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	FAM71A	NM_153606	exon1	c.1348delA	p.R450fs	.	.	141.0	12.0	107.0	0.0	.	.	Atlas-Indel
PELP1	27043	hgsc.bcm.edu	37	17	4576386	4576386	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PELP1	NM_014389	exon16	c.1901delG	p.R634fs	.	.	166.0	11.0	178.0	0.0	.	.	Atlas-Indel
SLCO3A1	28232	hgsc.bcm.edu	37	15	92706012	92706012	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SLCO3A1	NM_013272	exon10	c.1779delC	p.F593fs	.	.	211.0	13.0	329.0	0.0	.	.	Atlas-Indel
FILIP1L	11259	hgsc.bcm.edu	37	3	99568351	99568351	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	FILIP1L	NM_001042459	exon5	c.2170delG	p.E724fs	.	.	199.0	12.0	355.0	0.0	.	.	Atlas-Indel
PROL1	58503	hgsc.bcm.edu	37	4	71275514	71275514	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PROL1	NM_021225	exon3	c.468delT	p.N156fs	.	.	291.0	24.0	456.0	0.0	.	.	Atlas-Indel
RHOXF2	84528	hgsc.bcm.edu	37	X	119210952	119210952	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	.	NM_032498	exon2	c.382delC	p.L128fs	.	.	174.0	11.0	208.0	0.0	.	.	Atlas-Indel
ACO1	48	hgsc.bcm.edu	37	9	32418340	32418340	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ACO1	NM_002197	exon6	c.488delC	p.A163fs	.	.	193.0	12.0	252.0	0.0	.	.	Atlas-Indel
KIFC2	90990	hgsc.bcm.edu	37	8	145692926	145692926	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	KIFC2	NM_145754	exon5	c.527delT	p.L176fs	.	.	161.0	10.0	146.0	0.0	.	.	Atlas-Indel
CCDC174	51244	hgsc.bcm.edu	37	3	14708332	14708332	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	.	NM_016474	exon7	c.601delG	p.E201fs	.	.	153.0	10.0	228.0	0.0	.	.	Atlas-Indel
SNRPB2	6629	hgsc.bcm.edu	37	20	16721542	16721542	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SNRPB2	NM_003092	exon7	c.569delC	p.A190fs	.	.	152.0	10.0	193.0	0.0	.	.	Atlas-Indel
HMGB4	127540	hgsc.bcm.edu	37	1	34329847	34329847	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	HMGB4	NM_145205	exon2	c.54delC	p.H18fs	.	.	159.0	10.0	263.0	0.0	.	.	Atlas-Indel
DZIP1L	199221	hgsc.bcm.edu	37	3	137787113	137787113	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	DZIP1L	NM_173543	exon13	c.1713delA	p.P571fs	.	.	191.0	13.0	258.0	0.0	.	.	Atlas-Indel
TP53I13	90313	hgsc.bcm.edu	37	17	27899664	27899664	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	TP53I13	NM_138349	exon6	c.1017delC	p.R339fs	.	.	155.0	11.0	204.0	0.0	.	.	Atlas-Indel
COL24A1	255631	hgsc.bcm.edu	37	1	86313395	86313395	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	COL24A1	NM_152890	exon39	c.3416delT	p.I1139fs	.	.	178.0	11.0	209.0	0.0	.	.	Atlas-Indel
TACC2	10579	hgsc.bcm.edu	37	10	123970853	123970853	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	TACC2	NM_206862	exon9	c.6912delG	p.M2304fs	.	.	244.0	15.0	243.0	0.0	.	.	Atlas-Indel
SLCO1B3	28234	hgsc.bcm.edu	37	12	21054325	21054325	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SLCO1B3	NM_019844	exon15	c.1788delT	p.D596fs	.	.	200.0	14.0	244.0	0.0	.	.	Atlas-Indel
DDB2	1643	hgsc.bcm.edu	37	11	47259439	47259439	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	DDB2	NM_000107	exon8	c.1074delT	p.D358fs	.	.	122.0	10.0	232.0	0.0	.	.	Atlas-Indel
KIF20B	9585	hgsc.bcm.edu	37	10	91478521	91478521	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	KIF20B	NM_016195	exon12	c.1325delG	p.S442fs	.	.	188.0	13.0	280.0	0.0	.	.	Atlas-Indel
GSTA5	221357	hgsc.bcm.edu	37	6	52698964	52698964	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	GSTA5	NM_153699	exon5	c.390delT	p.N130fs	.	.	169.0	12.0	218.0	0.0	.	.	Atlas-Indel
RNF123	63891	hgsc.bcm.edu	37	3	49740083	49740083	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	RNF123	NM_022064	exon20	c.1646delG	p.C549fs	.	.	180.0	11.0	250.0	0.0	.	.	Atlas-Indel
SOGA2	23255	hgsc.bcm.edu	37	18	8783591	8783591	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	.	NM_015210	exon6	c.480delC	p.R160fs	.	.	187.0	13.0	253.0	0.0	.	.	Atlas-Indel
MARCH5	54708	hgsc.bcm.edu	37	10	94110929	94110929	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	MARCH5	NM_017824	exon6	c.801delC	p.R267fs	.	.	166.0	10.0	206.0	0.0	.	.	Atlas-Indel
TMX3	54495	hgsc.bcm.edu	37	18	66378643	66378643	+	Splice_Site	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	TMX3	NM_019022	exon4	c.102-2T>-	.	.	.	196.0	12.0	225.0	0.0	.	.	Atlas-Indel
CTAG2	30848	hgsc.bcm.edu	37	X	153880814	153880814	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CTAG2	NM_020994	exon2	c.362delC	p.A121fs	.	.	110.0	10.0	139.0	0.0	.	.	Atlas-Indel
SEMA3F	6405	hgsc.bcm.edu	37	3	50225339	50225339	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SEMA3F	NM_004186	exon19	c.2148delA	p.P716fs	.	.	261.0	16.0	315.0	0.0	.	.	Atlas-Indel
MDGA1	266727	hgsc.bcm.edu	37	6	37605207	37605207	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	MDGA1	NM_153487	exon17	c.2806delT	p.C936fs	.	.	210.0	13.0	284.0	0.0	.	.	Atlas-Indel
SPAG16	79582	hgsc.bcm.edu	37	2	214204964	214204964	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SPAG16	NM_024532	exon6	c.613delG	p.E205fs	.	.	302.0	20.0	395.0	0.0	.	.	Atlas-Indel
COL6A1	1291	hgsc.bcm.edu	37	21	47401838	47401838	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	COL6A1	NM_001848	exon1	c.73delA	p.T25fs	.	.	207.0	13.0	305.0	0.0	.	.	Atlas-Indel
SLCO4C1	353189	hgsc.bcm.edu	37	5	101595975	101595975	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SLCO4C1	NM_180991	exon6	c.1071delT	p.N357fs	.	.	180.0	11.0	242.0	0.0	.	.	Atlas-Indel
GUCY2C	2984	hgsc.bcm.edu	37	12	14825857	14825857	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	GUCY2C	NM_004963	exon9	c.1121delA	p.D374fs	.	.	177.0	12.0	246.0	0.0	.	.	Atlas-Indel
DHX29	54505	hgsc.bcm.edu	37	5	54565369	54565369	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	DHX29	NM_019030	exon21	c.3167delT	p.I1056fs	.	.	181.0	11.0	242.0	0.0	.	.	Atlas-Indel
IL18R1	8809	hgsc.bcm.edu	37	2	103013192	103013192	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	IL18R1	NM_003855	exon10	c.1471delC	p.L491fs	.	.	307.0	21.0	449.0	0.0	.	.	Atlas-Indel
KIAA1468	57614	hgsc.bcm.edu	37	18	59895676	59895676	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	KIAA1468	NM_020854	exon8	c.1292delG	p.G431fs	.	.	137.0	14.0	215.0	0.0	.	.	Atlas-Indel
SLCO1B1	10599	hgsc.bcm.edu	37	12	21375253	21375253	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SLCO1B1	NM_006446	exon13	c.1701delG	p.L567fs	.	.	182.0	13.0	252.0	0.0	.	.	Atlas-Indel
EXOSC9	5393	hgsc.bcm.edu	37	4	122737569	122737569	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	EXOSC9	NM_001034194	exon12	c.1252delA	p.I418fs	.	.	261.0	20.0	274.0	0.0	.	.	Atlas-Indel
GDA	9615	hgsc.bcm.edu	37	9	74860174	74860174	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	GDA	NM_001242505	exon12	c.1245delC	p.D415fs	.	.	131.0	13.0	147.0	0.0	.	.	Atlas-Indel
RFT1	91869	hgsc.bcm.edu	37	3	53126003	53126003	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	RFT1	NM_052859	exon13	c.1543delA	p.T515fs	.	.	209.0	13.0	300.0	0.0	.	.	Atlas-Indel
TBC1D12	23232	hgsc.bcm.edu	37	10	96269902	96269902	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	TBC1D12	NM_015188	exon8	c.1654delT	p.S552fs	.	.	148.0	11.0	184.0	0.0	.	.	Atlas-Indel
WBP11	51729	hgsc.bcm.edu	37	12	14943574	14943574	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	WBP11	NM_016312	exon10	c.1126delG	p.E376fs	.	.	163.0	10.0	246.0	0.0	.	.	Atlas-Indel
ENAM	10117	hgsc.bcm.edu	37	4	71501578	71501578	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ENAM	NM_031889	exon7	c.500delT	p.F167fs	.	.	142.0	11.0	210.0	0.0	.	.	Atlas-Indel
TYW3	127253	hgsc.bcm.edu	37	1	75229675	75229675	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	TYW3	NM_138467	exon6	c.657delG	p.K219fs	.	.	243.0	17.0	288.0	0.0	.	.	Atlas-Indel
TBX3	6926	hgsc.bcm.edu	37	12	115118903	115118903	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	TBX3	NM_005996	exon2	c.439delG	p.A147fs	.	.	182.0	11.0	244.0	0.0	.	.	Atlas-Indel
CUX2	23316	hgsc.bcm.edu	37	12	111785948	111785948	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CUX2	NM_015267	exon22	c.4279delG	p.A1427fs	.	.	166.0	10.0	223.0	0.0	.	.	Atlas-Indel
HAGH	3029	hgsc.bcm.edu	37	16	1866951	1866951	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	HAGH	NM_005326	exon7	c.691delG	p.A231fs	.	.	165.0	10.0	188.0	0.0	.	.	Atlas-Indel
CHPF	79586	hgsc.bcm.edu	37	2	220405010	220405010	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CHPF	NM_024536	exon4	c.1424delA	p.Q475fs	.	.	214.0	15.0	317.0	0.0	.	.	Atlas-Indel
COL16A1	1307	hgsc.bcm.edu	37	1	32134408	32134408	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	COL16A1	NM_001856	exon50	c.3245delA	p.E1082fs	.	.	132.0	10.0	192.0	0.0	.	.	Atlas-Indel
PTPRC	5788	hgsc.bcm.edu	37	1	198717290	198717290	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PTPRC	NM_002838	exon27	c.2899delG	p.E967fs	.	.	134.0	11.0	95.0	0.0	.	.	Atlas-Indel
FABP12	646486	hgsc.bcm.edu	37	8	82441805	82441805	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	FABP12	NM_001105281	exon2	c.115delC	p.P39fs	.	.	175.0	11.0	173.0	0.0	.	.	Atlas-Indel
UGP2	7360	hgsc.bcm.edu	37	2	64084969	64084969	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	UGP2	NM_006759	exon3	c.153delC	p.T51fs	.	.	106.0	10.0	134.0	0.0	.	.	Atlas-Indel
PARP9	83666	hgsc.bcm.edu	37	3	122274440	122274440	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PARP9	NM_001146102	exon4	c.684delT	p.N228fs	.	.	162.0	10.0	179.0	0.0	.	.	Atlas-Indel
REPS2	9185	hgsc.bcm.edu	37	X	17024379	17024379	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	REPS2	NM_001080975	exon2	c.308delA	p.Y103fs	.	.	153.0	10.0	167.0	0.0	.	.	Atlas-Indel
KBTBD12	166348	hgsc.bcm.edu	37	3	127642893	127642893	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	KBTBD12	NM_207335	exon1	c.988delG	p.E330fs	.	.	108.0	11.0	177.0	0.0	.	.	Atlas-Indel
PTCH2	8643	hgsc.bcm.edu	37	1	45296538	45296538	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PTCH2	NM_003738	exon6	c.796delA	p.N266fs	.	.	163.0	11.0	241.0	0.0	.	.	Atlas-Indel
MYO5A	4644	hgsc.bcm.edu	37	15	52688534	52688534	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	MYO5A	NM_000259	exon11	c.1381delC	p.L461fs	.	.	179.0	12.0	260.0	0.0	.	.	Atlas-Indel
FAM122A	116224	hgsc.bcm.edu	37	9	71395729	71395729	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	FAM122A	NM_138333	exon1	c.648delA	p.R216fs	.	.	165.0	11.0	227.0	0.0	.	.	Atlas-Indel
UBE2O	63893	hgsc.bcm.edu	37	17	74388089	74388089	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	UBE2O	NM_022066	exon16	c.3053delA	p.H1018fs	.	.	178.0	13.0	126.0	0.0	.	.	Atlas-Indel
FAM171A1	221061	hgsc.bcm.edu	37	10	15255681	15255681	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	FAM171A1	NM_001010924	exon8	c.1907delA	p.Q636fs	.	.	165.0	10.0	205.0	0.0	.	.	Atlas-Indel
DSG3	1830	hgsc.bcm.edu	37	18	29037066	29037066	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	DSG3	NM_001944	exon3	c.194delC	p.S65X	.	.	126.0	11.0	157.0	0.0	.	.	Atlas-Indel
WWOX	51741	hgsc.bcm.edu	37	16	78143722	78143722	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	WWOX	NM_130791	exon3	c.219delG	p.V73fs	.	.	152.0	11.0	201.0	0.0	.	.	Atlas-Indel
LPPR2	0	hgsc.bcm.edu	37	19	11470601	11470601	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	LPPR2	NM_022737	exon5	c.359delG	p.S120fs	.	.	123.0	10.0	173.0	0.0	.	.	Atlas-Indel
SEPT2	4735	hgsc.bcm.edu	37	2	242275390	242275390	+	Splice_Site	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SEPT2	NM_006155	exon5	c.218-1A>-	.	.	.	143.0	13.0	207.0	0.0	.	.	Atlas-Indel
CACNG3	10368	hgsc.bcm.edu	37	16	24358078	24358078	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CACNG3	NM_006539	exon2	c.234delG	p.K78fs	.	.	112.0	11.0	174.0	0.0	.	.	Atlas-Indel
PCDHB14	56122	hgsc.bcm.edu	37	5	140603423	140603423	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PCDHB14	NM_018934	exon1	c.345delG	p.Q115fs	.	.	192.0	12.0	225.0	0.0	.	.	Atlas-Indel
PLIN4	729359	hgsc.bcm.edu	37	19	4512723	4512723	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PLIN4	NM_001080400	exon3	c.1208delC	p.A403fs	.	.	228.0	14.0	334.0	0.0	.	.	Atlas-Indel
MUC5B	727897	hgsc.bcm.edu	37	11	1276641	1276641	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	.	NM_002458	exon37	c.15918delG	p.V5306fs	.	.	142.0	10.0	249.0	0.0	.	.	Atlas-Indel
BTG3	10950	hgsc.bcm.edu	37	21	18981340	18981340	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	BTG3	NM_006806	exon2	c.124delT	p.Y42fs	.	.	166.0	11.0	153.0	0.0	.	.	Atlas-Indel
RANBP6	26953	hgsc.bcm.edu	37	9	6015153	6015153	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	RANBP6	NM_012416	exon1	c.456delT	p.N152fs	.	.	159.0	10.0	181.0	0.0	.	.	Atlas-Indel
RYR2	6262	hgsc.bcm.edu	37	1	237778080	237778080	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	RYR2	NM_001035	exon37	c.5651delA	p.K1884fs	.	.	182.0	13.0	154.0	0.0	.	.	Atlas-Indel
FRY	10129	hgsc.bcm.edu	37	13	32722055	32722055	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	FRY	NM_023037	exon13	c.1362delC	p.I454fs	.	.	174.0	12.0	225.0	0.0	.	.	Atlas-Indel
DNAJC10	54431	hgsc.bcm.edu	37	2	183582853	183582865	+	Frame_Shift_Del	DEL	TTGAAAAGGATCA	TTGAAAAGGATCA	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	TTGAAAAGGATCA	TTGAAAAGGATCA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	DNAJC10	NM_001271581	exon3	c.39_51del	p.13_17del	.	.	79.0	13.0	156.0	0.0	.	.	Atlas-Indel
KDM2B	84678	hgsc.bcm.edu	37	12	121880092	121880092	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	KDM2B	NM_032590	exon19	c.3153delG	p.P1051fs	.	.	178.0	13.0	171.0	0.0	.	.	Atlas-Indel
FAM63A	55793	hgsc.bcm.edu	37	1	150974245	150974245	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	FAM63A	NM_001163258	exon4	c.612delG	p.P204fs	.	.	192.0	15.0	179.0	0.0	.	.	Atlas-Indel
ANO1	55107	hgsc.bcm.edu	37	11	70033894	70033894	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ANO1	NM_018043	exon26	c.2744delT	p.I915fs	.	.	180.0	11.0	231.0	0.0	.	.	Atlas-Indel
WNK1	65125	hgsc.bcm.edu	37	12	987482	987482	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	WNK1	NM_213655	exon12	c.3821delA	p.Q1274fs	.	.	216.0	13.0	256.0	0.0	.	.	Atlas-Indel
FAM71B	153745	hgsc.bcm.edu	37	5	156592606	156592606	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	FAM71B	NM_130899	exon1	c.575delA	p.D192fs	.	.	212.0	14.0	354.0	0.0	.	.	Atlas-Indel
CHD6	84181	hgsc.bcm.edu	37	20	40084446	40084446	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CHD6	NM_032221	exon19	c.3004delG	p.A1002fs	.	.	202.0	13.0	274.0	0.0	.	.	Atlas-Indel
ZSCAN4	201516	hgsc.bcm.edu	37	19	58189897	58189897	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ZSCAN4	NM_152677	exon5	c.925delC	p.Q309fs	.	.	143.0	11.0	213.0	0.0	.	.	Atlas-Indel
FLT3	2322	hgsc.bcm.edu	37	13	28626770	28626770	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	FLT3	NM_004119	exon5	c.527delT	p.M176fs	.	.	152.0	10.0	174.0	0.0	.	.	Atlas-Indel
USH2A	7399	hgsc.bcm.edu	37	1	216019331	216019331	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	USH2A	NM_206933	exon45	c.8891delG	p.W2964X	.	.	215.0	14.0	189.0	0.0	.	.	Atlas-Indel
DSP	1832	hgsc.bcm.edu	37	6	7574928	7574928	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	DSP	NM_004415	exon17	c.2335delC	p.Q779fs	.	.	134.0	10.0	216.0	0.0	.	.	Atlas-Indel
COG6	57511	hgsc.bcm.edu	37	13	40273702	40273702	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	COG6	NM_001145079	exon13	c.1230delC	p.S410fs	.	.	130.0	12.0	158.0	0.0	.	.	Atlas-Indel
COL28A1	340267	hgsc.bcm.edu	37	7	7559697	7559697	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	COL28A1	NM_001037763	exon6	c.810delC	p.N270fs	.	.	231.0	15.0	140.0	0.0	.	.	Atlas-Indel
TMEM130	222865	hgsc.bcm.edu	37	7	98460876	98460876	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	TMEM130	NM_152913	exon2	c.234delG	p.P78fs	.	.	174.0	12.0	180.0	0.0	.	.	Atlas-Indel
ATG16L1	55054	hgsc.bcm.edu	37	2	234178690	234178690	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ATG16L1	NM_017974	exon6	c.683delC	p.A228fs	.	.	249.0	15.0	287.0	0.0	.	.	Atlas-Indel
ARCN1	372	hgsc.bcm.edu	37	11	118452086	118452086	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ARCN1	NM_001655	exon2	c.128delG	p.G43fs	.	.	151.0	10.0	260.0	0.0	.	.	Atlas-Indel
LGI1	9211	hgsc.bcm.edu	37	10	95552602	95552602	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	LGI1	NM_005097	exon6	c.605delG	p.G202fs	.	.	177.0	12.0	231.0	0.0	.	.	Atlas-Indel
RREB1	6239	hgsc.bcm.edu	37	6	7232097	7232097	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	RREB1	NM_001003700	exon10	c.3764delT	p.F1255fs	.	.	180.0	11.0	246.0	0.0	.	.	Atlas-Indel
TTLL6	284076	hgsc.bcm.edu	37	17	46846369	46846369	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	TTLL6	NM_001130918	exon15	c.2659delG	p.G887fs	.	.	204.0	13.0	246.0	0.0	.	.	Atlas-Indel
CDC27	996	hgsc.bcm.edu	37	17	45209674	45209674	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CDC27	NM_001114091	exon15	c.1999delG	p.A667fs	.	.	115.0	10.0	118.0	0.0	.	.	Atlas-Indel
ERAP1	51752	hgsc.bcm.edu	37	5	96139154	96139154	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ERAP1	NM_001198541	exon2	c.477delC	p.F159fs	.	.	173.0	11.0	227.0	0.0	.	.	Atlas-Indel
CCDC89	220388	hgsc.bcm.edu	37	11	85397087	85397087	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CCDC89	NM_152723	exon1	c.88delC	p.L30X	.	.	176.0	11.0	237.0	0.0	.	.	Atlas-Indel
SLC7A2	6542	hgsc.bcm.edu	37	8	17402081	17402081	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SLC7A2	NM_001164771	exon3	c.617delA	p.D206fs	.	.	149.0	10.0	332.0	0.0	.	.	Atlas-Indel
IFRD1	3475	hgsc.bcm.edu	37	7	112108039	112108039	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	IFRD1	NM_001007245	exon10	c.909delC	p.D303fs	.	.	121.0	12.0	134.0	0.0	.	.	Atlas-Indel
CDK8	1024	hgsc.bcm.edu	37	13	26923240	26923240	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CDK8	NM_001260	exon3	c.235delA	p.I79fs	.	.	182.0	11.0	251.0	0.0	.	.	Atlas-Indel
FAT1	2195	hgsc.bcm.edu	37	4	187541324	187541324	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	FAT1	NM_005245	exon10	c.6417delG	p.K2139fs	.	.	168.0	11.0	177.0	0.0	.	.	Atlas-Indel
MMP8	4317	hgsc.bcm.edu	37	11	102587087	102587087	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	MMP8	NM_002424	exon6	c.849delG	p.L283fs	.	.	144.0	10.0	120.0	0.0	.	.	Atlas-Indel
TMEM229B	161145	hgsc.bcm.edu	37	14	67940172	67940172	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	TMEM229B	NM_182526	exon3	c.470delT	p.L157fs	.	.	153.0	10.0	209.0	0.0	.	.	Atlas-Indel
KIAA1609	57707	hgsc.bcm.edu	37	16	84520325	84520325	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	KIAA1609	NM_020947	exon5	c.871delC	p.P291fs	.	.	138.0	10.0	244.0	0.0	.	.	Atlas-Indel
SMIM15	643155	hgsc.bcm.edu	37	5	60455781	60455781	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	.	NM_001048249	exon3	c.219delG	p.K73fs	.	.	141.0	11.0	177.0	0.0	.	.	Atlas-Indel
PRKACB	5567	hgsc.bcm.edu	37	1	84679946	84679946	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PRKACB	NM_182948	exon9	c.1016delT	p.I339fs	.	.	131.0	13.0	165.0	0.0	.	.	Atlas-Indel
ZNF77	58492	hgsc.bcm.edu	37	19	2934192	2934192	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ZNF77	NM_021217	exon4	c.934delA	p.R312fs	.	.	180.0	12.0	258.0	0.0	.	.	Atlas-Indel
HLA-DRB1	3123	hgsc.bcm.edu	37	6	32548050	32548050	+	Splice_Site	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	HLA-DRB1	NM_002124	exon6	c.764-2C>-	.	.	.	130.0	10.0	215.0	0.0	.	.	Atlas-Indel
EYS	346007	hgsc.bcm.edu	37	6	66054028	66054028	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	EYS	NM_001142801	exon10	c.1503delC	p.F501fs	.	.	170.0	11.0	217.0	0.0	.	.	Atlas-Indel
CEP135	9662	hgsc.bcm.edu	37	4	56841104	56841104	+	Frame_Shift_Del	DEL	A	A	-	rs34965077		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CEP135	NM_025009	exon11	c.1441delG	p.E481fs	.	.	141.0	10.0	173.0	0.0	.	.	Atlas-Indel
ZNF217	7764	hgsc.bcm.edu	37	20	52193620	52193620	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ZNF217	NM_006526	exon3	c.1684delG	p.D562fs	.	.	139.0	12.0	178.0	0.0	.	.	Atlas-Indel
MLL	4297	hgsc.bcm.edu	37	11	118377153	118377153	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	MLL	NM_001197104	exon27	c.10545delT	p.P3515fs	.	.	106.0	10.0	131.0	0.0	.	.	Atlas-Indel
GCN1L1	10985	hgsc.bcm.edu	37	12	120580649	120580649	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	GCN1L1	NM_006836	exon43	c.5593delG	p.G1865fs	.	.	195.0	12.0	290.0	0.0	.	.	Atlas-Indel
KIF26B	55083	hgsc.bcm.edu	37	1	245848940	245848940	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	KIF26B	NM_018012	exon12	c.2654delG	p.G885fs	.	.	341.0	21.0	238.0	0.0	.	.	Atlas-Indel
SULF1	23213	hgsc.bcm.edu	37	8	70488249	70488249	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SULF1	NM_001128205	exon6	c.216delT	p.H72fs	.	.	199.0	13.0	164.0	0.0	.	.	Atlas-Indel
FEM1B	10116	hgsc.bcm.edu	37	15	68582064	68582064	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	FEM1B	NM_015322	exon2	c.367delA	p.T123fs	.	.	161.0	11.0	260.0	0.0	.	.	Atlas-Indel
AHI1	54806	hgsc.bcm.edu	37	6	135811800	135811800	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	AHI1	NM_001134832	exon4	c.97delC	p.L33X	.	.	212.0	13.0	277.0	0.0	.	.	Atlas-Indel
FAM47B	170062	hgsc.bcm.edu	37	X	34961258	34961258	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	FAM47B	NM_152631	exon1	c.309delA	p.L103fs	.	.	165.0	12.0	183.0	0.0	.	.	Atlas-Indel
BIVM-ERCC5	0	hgsc.bcm.edu	37	13	103508419	103508419	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	.	NM_001204425	exon13	c.1846delG	p.E616fs	.	.	333.0	21.0	552.0	0.0	.	.	Atlas-Indel
GRIN2C	2905	hgsc.bcm.edu	37	17	72838789	72838789	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	GRIN2C	NM_000835	exon13	c.3488delC	p.A1163fs	.	.	165.0	10.0	160.0	0.0	.	.	Atlas-Indel
USP47	55031	hgsc.bcm.edu	37	11	11970052	11970052	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	USP47	NM_017944	exon21	c.3090delT	p.L1030fs	.	.	159.0	10.0	162.0	0.0	.	.	Atlas-Indel
RPAP1	26015	hgsc.bcm.edu	37	15	41819194	41819194	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	RPAP1	NM_015540	exon14	c.1820delC	p.A607fs	.	.	151.0	10.0	180.0	0.0	.	.	Atlas-Indel
SLC27A5	10998	hgsc.bcm.edu	37	19	59010549	59010549	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SLC27A5	NM_012254	exon8	c.1707delC	p.G569fs	.	.	168.0	11.0	249.0	0.0	.	.	Atlas-Indel
RABEP1	9135	hgsc.bcm.edu	37	17	5268420	5268420	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	RABEP1	NM_004703	exon11	c.1671delG	p.V557fs	.	.	191.0	16.0	208.0	0.0	.	.	Atlas-Indel
HOOK1	51361	hgsc.bcm.edu	37	1	60325886	60325886	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	HOOK1	NM_015888	exon15	c.1417delG	p.E473fs	.	.	178.0	15.0	217.0	0.0	.	.	Atlas-Indel
CPSF2	53981	hgsc.bcm.edu	37	14	92604666	92604666	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CPSF2	NM_017437	exon7	c.635delG	p.R212fs	.	.	347.0	23.0	437.0	0.0	.	.	Atlas-Indel
FAM135B	51059	hgsc.bcm.edu	37	8	139151232	139151232	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	FAM135B	NM_015912	exon18	c.3899delC	p.T1300fs	.	.	197.0	15.0	200.0	0.0	.	.	Atlas-Indel
LRP1	4035	hgsc.bcm.edu	37	12	57556256	57556256	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	LRP1	NM_002332	exon14	c.2358delG	p.R786fs	.	.	118.0	10.0	185.0	0.0	.	.	Atlas-Indel
MLL2	8085	hgsc.bcm.edu	37	12	49444268	49444268	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	MLL2	NM_003482	exon11	c.3104delA	p.Q1035fs	.	.	223.0	15.0	310.0	0.0	.	.	Atlas-Indel
THUMPD1	55623	hgsc.bcm.edu	37	16	20749224	20749224	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	THUMPD1	NM_017736	exon3	c.462delG	p.K154fs	.	.	193.0	14.0	240.0	0.0	.	.	Atlas-Indel
C9orf131	138724	hgsc.bcm.edu	37	9	35042287	35042287	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	C9orf131	NM_001040410	exon1	c.35delA	p.K12fs	.	.	148.0	11.0	170.0	0.0	.	.	Atlas-Indel
DNHD1	144132	hgsc.bcm.edu	37	11	6568378	6568378	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	DNHD1	NM_144666	exon21	c.6208delC	p.Q2070fs	.	.	163.0	12.0	225.0	0.0	.	.	Atlas-Indel
ETV4	2118	hgsc.bcm.edu	37	17	41605953	41605953	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ETV4	NM_001986	exon13	c.1390delG	p.A464fs	.	.	176.0	11.0	221.0	0.0	.	.	Atlas-Indel
SEZ6L2	26470	hgsc.bcm.edu	37	16	29899871	29899871	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SEZ6L2	NM_001243332	exon6	c.1030delA	p.S344fs	.	.	147.0	10.0	133.0	0.0	.	.	Atlas-Indel
PLEKHO1	51177	hgsc.bcm.edu	37	1	150129661	150129661	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PLEKHO1	NM_016274	exon5	c.505delA	p.R169fs	.	.	141.0	10.0	130.0	0.0	.	.	Atlas-Indel
MTIF2	4528	hgsc.bcm.edu	37	2	55473549	55473549	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	MTIF2	NM_002453	exon10	c.1031delT	p.M344fs	.	.	143.0	11.0	252.0	0.0	.	.	Atlas-Indel
TSPYL2	64061	hgsc.bcm.edu	37	X	53113779	53113779	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	TSPYL2	NM_022117	exon2	c.859delA	p.I287fs	.	.	118.0	10.0	201.0	0.0	.	.	Atlas-Indel
GP1BA	2811	hgsc.bcm.edu	37	17	4837331	4837331	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	.	NM_000173	exon2	c.1431delA	p.T477fs	.	.	155.0	10.0	217.0	0.0	.	.	Atlas-Indel
PKHD1	5314	hgsc.bcm.edu	37	6	51503672	51503672	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PKHD1	NM_138694	exon64	c.11482delA	p.I3828fs	.	.	165.0	10.0	210.0	0.0	.	.	Atlas-Indel
DNAJC13	23317	hgsc.bcm.edu	37	3	132175174	132175174	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	DNAJC13	NM_015268	exon10	c.1027delT	p.W343fs	.	.	162.0	10.0	243.0	0.0	.	.	Atlas-Indel
WDR19	57728	hgsc.bcm.edu	37	4	39280220	39280220	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	WDR19	NM_025132	exon36	c.3978delG	p.L1326fs	.	.	183.0	11.0	235.0	0.0	.	.	Atlas-Indel
CASC4	113201	hgsc.bcm.edu	37	15	44624241	44624241	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CASC4	NM_138423	exon4	c.540delT	p.I180fs	.	.	187.0	12.0	181.0	0.0	.	.	Atlas-Indel
SPHK1	8877	hgsc.bcm.edu	37	17	74381231	74381231	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SPHK1	NM_182965	exon1	c.44delT	p.L15fs	.	.	222.0	14.0	212.0	0.0	.	.	Atlas-Indel
GDF5	8200	hgsc.bcm.edu	37	20	34025211	34025211	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	GDF5	NM_000557	exon1	c.499delA	p.I167fs	.	.	146.0	11.0	154.0	0.0	.	.	Atlas-Indel
BACH2	60468	hgsc.bcm.edu	37	6	90660586	90660586	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	BACH2	NM_021813	exon7	c.1240delC	p.P414fs	.	.	149.0	10.0	187.0	0.0	.	.	Atlas-Indel
SETD4	54093	hgsc.bcm.edu	37	21	37418076	37418076	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SETD4	NM_001007259	exon6	c.531delC	p.F177fs	.	.	160.0	10.0	215.0	0.0	.	.	Atlas-Indel
ANKRD20A4	728747	hgsc.bcm.edu	37	9	69386012	69386012	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	.	NM_001098805	exon3	c.448delG	p.E150fs	.	.	163.0	10.0	216.0	0.0	.	.	Atlas-Indel
PFKP	5214	hgsc.bcm.edu	37	10	3155593	3155593	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PFKP	NM_002627	exon13	c.1253delT	p.V418fs	.	.	146.0	12.0	163.0	0.0	.	.	Atlas-Indel
C2CD5	9847	hgsc.bcm.edu	37	12	22671015	22671015	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	.	NM_014802	exon8	c.858delT	p.P286fs	.	.	162.0	10.0	220.0	0.0	.	.	Atlas-Indel
ADK	132	hgsc.bcm.edu	37	10	76153962	76153962	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ADK	NM_001202450	exon5	c.336delT	p.F112fs	.	.	137.0	10.0	239.0	0.0	.	.	Atlas-Indel
DCT	1638	hgsc.bcm.edu	37	13	95118899	95118899	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	DCT	NM_001129889	exon3	c.610delT	p.Y204fs	.	.	199.0	12.0	293.0	0.0	.	.	Atlas-Indel
ARGLU1	55082	hgsc.bcm.edu	37	13	107219922	107219922	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ARGLU1	NM_018011	exon1	c.347delT	p.I116fs	.	.	140.0	10.0	201.0	0.0	.	.	Atlas-Indel
LCK	3932	hgsc.bcm.edu	37	1	32742265	32742265	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	LCK	NM_005356	exon9	c.841delT	p.S281fs	.	.	161.0	10.0	229.0	0.0	.	.	Atlas-Indel
SPATA6	54558	hgsc.bcm.edu	37	1	48771508	48771508	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SPATA6	NM_019073	exon12	c.1238delG	p.R413fs	.	.	153.0	10.0	187.0	0.0	.	.	Atlas-Indel
LSP1	4046	hgsc.bcm.edu	37	11	1902755	1902755	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	LSP1	NM_001242932	exon4	c.668delA	p.E223fs	.	.	197.0	14.0	253.0	0.0	.	.	Atlas-Indel
TULP4	56995	hgsc.bcm.edu	37	6	158915819	158915819	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	TULP4	NM_001007466	exon11	c.1810delT	p.W604fs	.	.	169.0	11.0	291.0	0.0	.	.	Atlas-Indel
CXXC11	285093	hgsc.bcm.edu	37	2	242814476	242814476	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	.	NM_173821	exon2	c.768delT	p.P256fs	.	.	156.0	10.0	224.0	0.0	.	.	Atlas-Indel
SMC6	79677	hgsc.bcm.edu	37	2	17888597	17888597	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SMC6	NM_001142286	exon18	c.1896delT	p.N632fs	.	.	179.0	16.0	234.0	0.0	.	.	Atlas-Indel
VPS13D	55187	hgsc.bcm.edu	37	1	12336449	12336449	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	VPS13D	NM_015378	exon19	c.2803delA	p.T935fs	.	.	125.0	11.0	174.0	0.0	.	.	Atlas-Indel
TESPA1	9840	hgsc.bcm.edu	37	12	55356761	55356761	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	.	NM_001098815	exon9	c.922delA	p.K308fs	.	.	153.0	12.0	169.0	0.0	.	.	Atlas-Indel
USP24	23358	hgsc.bcm.edu	37	1	55608747	55608747	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	USP24	NM_015306	exon22	c.2486delT	p.I829fs	.	.	193.0	12.0	284.0	0.0	.	.	Atlas-Indel
PGAM4	441531	hgsc.bcm.edu	37	X	77224433	77224433	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PGAM4	NM_001029891	exon1	c.704delA	p.D235fs	.	.	151.0	11.0	226.0	0.0	.	.	Atlas-Indel
KIAA1045	23349	hgsc.bcm.edu	37	9	34976586	34976586	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	KIAA1045	NM_015297	exon5	c.697delC	p.R233fs	.	.	110.0	11.0	170.0	0.0	.	.	Atlas-Indel
MAP3K11	4296	hgsc.bcm.edu	37	11	65366937	65366937	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	MAP3K11	NM_002419	exon9	c.2135delT	p.L712fs	.	.	220.0	15.0	254.0	0.0	.	.	Atlas-Indel
LAMB1	3912	hgsc.bcm.edu	37	7	107564717	107564717	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	LAMB1	NM_002291	exon33	c.5183delC	p.T1728fs	.	.	246.0	16.0	223.0	0.0	.	.	Atlas-Indel
PLA2G4C	8605	hgsc.bcm.edu	37	19	48558214	48558214	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PLA2G4C	NM_001159322	exon15	c.1381delG	p.A461fs	.	.	171.0	11.0	180.0	0.0	.	.	Atlas-Indel
KCNK10	54207	hgsc.bcm.edu	37	14	88693828	88693828	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	KCNK10	NM_138318	exon4	c.573delA	p.L191fs	.	.	97.0	40.0	80.0	0.0	.	.	Atlas-Indel
SECISBP2L	9728	hgsc.bcm.edu	37	15	49319614	49319614	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SECISBP2L	NM_001193489	exon7	c.984delT	p.N328fs	.	.	184.0	12.0	229.0	0.0	.	.	Atlas-Indel
TMEM144	55314	hgsc.bcm.edu	37	4	159165494	159165494	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	TMEM144	NM_018342	exon12	c.946delG	p.E316fs	.	.	171.0	12.0	235.0	0.0	.	.	Atlas-Indel
DAB2	1601	hgsc.bcm.edu	37	5	39377168	39377168	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	DAB2	NM_001343	exon12	c.1722delC	p.G574fs	.	.	192.0	12.0	251.0	0.0	.	.	Atlas-Indel
IL27RA	9466	hgsc.bcm.edu	37	19	14150617	14150617	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	IL27RA	NM_004843	exon4	c.428delA	p.D143fs	.	.	152.0	10.0	221.0	0.0	.	.	Atlas-Indel
HERC2	8924	hgsc.bcm.edu	37	15	28421641	28421641	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	HERC2	NM_004667	exon63	c.9620delT	p.V3207fs	.	.	231.0	15.0	283.0	0.0	.	.	Atlas-Indel
SMTNL1	219537	hgsc.bcm.edu	37	11	57313466	57313466	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SMTNL1	NM_001105565	exon4	c.1029delG	p.G343fs	.	.	165.0	10.0	232.0	0.0	.	.	Atlas-Indel
ADCY9	115	hgsc.bcm.edu	37	16	4027526	4027526	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ADCY9	NM_001116	exon9	c.2786delC	p.A929fs	.	.	203.0	13.0	306.0	0.0	.	.	Atlas-Indel
C12orf39	80763	hgsc.bcm.edu	37	12	21684129	21684129	+	In_Frame_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	C12orf39	NM_030572	exon6	c.350delG	p.X117X	.	.	155.0	10.0	246.0	0.0	.	.	Atlas-Indel
TSPYL1	7259	hgsc.bcm.edu	37	6	116600132	116600132	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	TSPYL1	NM_003309	exon1	c.863delA	p.Q288fs	.	.	165.0	11.0	203.0	0.0	.	.	Atlas-Indel
SLC46A3	283537	hgsc.bcm.edu	37	13	29286951	29286951	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SLC46A3	NM_181785	exon3	c.927delG	p.L309fs	.	.	147.0	10.0	204.0	0.0	.	.	Atlas-Indel
CCDC169-SOHLH2	100526761	hgsc.bcm.edu	37	13	36764122	36764122	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	.	NM_001198910	exon11	c.834delG	p.K278fs	.	.	171.0	11.0	216.0	0.0	.	.	Atlas-Indel
AMOTL2	51421	hgsc.bcm.edu	37	3	134084701	134084701	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	AMOTL2	NM_016201	exon5	c.1238delA	p.Q413fs	.	.	154.0	11.0	218.0	0.0	.	.	Atlas-Indel
ZSCAN31	64288	hgsc.bcm.edu	37	6	28295184	28295184	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	.	NM_030899	exon3	c.509delG	p.C170fs	.	.	143.0	12.0	195.0	0.0	.	.	Atlas-Indel
EPX	8288	hgsc.bcm.edu	37	17	56274371	56274371	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	EPX	NM_000502	exon7	c.872delG	p.C291fs	.	.	189.0	12.0	177.0	0.0	.	.	Atlas-Indel
CNTN3	5067	hgsc.bcm.edu	37	3	74385778	74385778	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CNTN3	NM_020872	exon11	c.1397delT	p.I466fs	.	.	219.0	14.0	228.0	0.0	.	.	Atlas-Indel
DMD	1756	hgsc.bcm.edu	37	X	31198546	31198546	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	DMD	NM_004006	exon69	c.10028delC	p.S3343fs	.	.	221.0	14.0	261.0	0.0	.	.	Atlas-Indel
NRIP1	8204	hgsc.bcm.edu	37	21	16339766	16339766	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	NRIP1	NM_003489	exon4	c.749delG	p.R250fs	.	.	144.0	12.0	177.0	0.0	.	.	Atlas-Indel
RHOBTB3	22836	hgsc.bcm.edu	37	5	95099309	95099309	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	RHOBTB3	NM_014899	exon7	c.1145delT	p.L382X	.	.	172.0	12.0	219.0	0.0	.	.	Atlas-Indel
ZNF157	7712	hgsc.bcm.edu	37	X	47271956	47271956	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ZNF157	NM_003446	exon4	c.483delC	p.N161fs	.	.	162.0	10.0	182.0	0.0	.	.	Atlas-Indel
FARP1	10160	hgsc.bcm.edu	37	13	99092237	99092237	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	FARP1	NM_005766	exon22	c.2455delT	p.W819fs	.	.	122.0	10.0	143.0	0.0	.	.	Atlas-Indel
CHD1	1105	hgsc.bcm.edu	37	5	98232103	98232103	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CHD1	NM_001270	exon11	c.1538delC	p.T513fs	.	.	167.0	11.0	206.0	0.0	.	.	Atlas-Indel
CYP2S1	29785	hgsc.bcm.edu	37	19	41700601	41700601	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CYP2S1	NM_030622	exon2	c.329delC	p.T110fs	.	.	229.0	14.0	328.0	0.0	.	.	Atlas-Indel
ATAD3B	83858	hgsc.bcm.edu	37	1	1431107	1431107	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ATAD3B	NM_031921	exon16	c.1856delT	p.M619fs	.	.	225.0	14.0	324.0	0.0	.	.	Atlas-Indel
ATAD2B	54454	hgsc.bcm.edu	37	2	24042637	24042637	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ATAD2B	NM_017552	exon17	c.2248delC	p.P750fs	.	.	86.0	23.0	120.0	0.0	.	.	Atlas-Indel
RDX	5962	hgsc.bcm.edu	37	11	110126047	110126047	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	RDX	NM_001260493	exon8	c.763delT	p.F255fs	.	.	233.0	16.0	264.0	0.0	.	.	Atlas-Indel
NIPBL	25836	hgsc.bcm.edu	37	5	37003425	37003425	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	NIPBL	NM_015384	exon16	c.3830delC	p.S1277X	.	.	200.0	12.0	237.0	0.0	.	.	Atlas-Indel
LNPEP	4012	hgsc.bcm.edu	37	5	96341897	96341897	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	LNPEP	NM_005575	exon10	c.1905delC	p.F635fs	.	.	165.0	10.0	188.0	0.0	.	.	Atlas-Indel
FGFR3	2261	hgsc.bcm.edu	37	4	1803669	1803669	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	FGFR3	NM_001163213	exon7	c.846delG	p.Q282fs	.	.	148.0	11.0	234.0	0.0	.	.	Atlas-Indel
CNOT4	4850	hgsc.bcm.edu	37	7	135106990	135106990	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CNOT4	NM_001190850	exon3	c.288delT	p.N96fs	.	.	239.0	16.0	246.0	0.0	.	.	Atlas-Indel
RPE65	6121	hgsc.bcm.edu	37	1	68905279	68905279	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	RPE65	NM_000329	exon7	c.691delT	p.C231fs	.	.	145.0	10.0	231.0	0.0	.	.	Atlas-Indel
CNP	1267	hgsc.bcm.edu	37	17	40123969	40123969	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CNP	NM_033133	exon3	c.735delA	p.R245fs	.	.	193.0	12.0	324.0	0.0	.	.	Atlas-Indel
LILRA1	11024	hgsc.bcm.edu	37	19	55105714	55105714	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	LILRA1	NM_006863	exon2	c.4delA	p.T2fs	.	.	216.0	15.0	254.0	0.0	.	.	Atlas-Indel
IFNA17	3451	hgsc.bcm.edu	37	9	21227622	21227622	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	IFNA17	NM_021268	exon1	c.552delA	p.I184fs	.	.	343.0	24.0	425.0	0.0	.	.	Atlas-Indel
CCDC149	91050	hgsc.bcm.edu	37	4	24824159	24824159	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CCDC149	NM_173463	exon11	c.1003delT	p.L335X	.	.	275.0	19.0	355.0	0.0	.	.	Atlas-Indel
GOLGA4	2803	hgsc.bcm.edu	37	3	37366955	37366955	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	GOLGA4	NM_001172713	exon15	c.3643delG	p.E1215fs	.	.	233.0	15.0	288.0	0.0	.	.	Atlas-Indel
SLC39A7	7922	hgsc.bcm.edu	37	6	33169107	33169107	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SLC39A7	NM_001077516	exon2	c.84delC	p.L28fs	.	.	157.0	11.0	204.0	0.0	.	.	Atlas-Indel
CYP4V2	285440	hgsc.bcm.edu	37	4	187130116	187130116	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CYP4V2	NM_207352	exon9	c.1187delC	p.P396fs	.	.	161.0	10.0	236.0	0.0	.	.	Atlas-Indel
ZNF585A	199704	hgsc.bcm.edu	37	19	37642695	37642695	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ZNF585A	NM_199126	exon6	c.1942delT	p.S648fs	.	.	220.0	14.0	310.0	0.0	.	.	Atlas-Indel
USP15	9958	hgsc.bcm.edu	37	12	62785098	62785098	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	USP15	NM_001252078	exon16	c.2121delC	p.H707fs	.	.	164.0	11.0	213.0	0.0	.	.	Atlas-Indel
MFSD1	64747	hgsc.bcm.edu	37	3	158524843	158524843	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	MFSD1	NM_022736	exon4	c.490delA	p.I164fs	.	.	269.0	17.0	378.0	0.0	.	.	Atlas-Indel
PFAS	5198	hgsc.bcm.edu	37	17	8167127	8167127	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PFAS	NM_012393	exon15	c.1663delT	p.W555fs	.	.	124.0	10.0	205.0	0.0	.	.	Atlas-Indel
HIPK1	204851	hgsc.bcm.edu	37	1	114515848	114515848	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	HIPK1	NM_198268	exon16	c.3346delG	p.A1116fs	.	.	162.0	11.0	203.0	0.0	.	.	Atlas-Indel
XIRP1	165904	hgsc.bcm.edu	37	3	39227535	39227535	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	XIRP1	NM_194293	exon2	c.3403delT	p.W1135fs	.	.	164.0	11.0	222.0	0.0	.	.	Atlas-Indel
XIRP2	129446	hgsc.bcm.edu	37	2	168108333	168108333	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	XIRP2	NM_152381	exon9	c.10430delG	p.R3477fs	.	.	175.0	11.0	208.0	0.0	.	.	Atlas-Indel
FMNL3	91010	hgsc.bcm.edu	37	12	50100871	50100871	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	FMNL3	NM_175736	exon1	c.94delT	p.C32fs	.	.	228.0	14.0	321.0	0.0	.	.	Atlas-Indel
ATP13A2	23400	hgsc.bcm.edu	37	1	17312586	17312586	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ATP13A2	NM_001141974	exon27	c.3372delG	p.P1124fs	.	.	160.0	10.0	247.0	0.0	.	.	Atlas-Indel
EDARADD	128178	hgsc.bcm.edu	37	1	236590742	236590742	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	EDARADD	NM_145861	exon4	c.210delG	p.M70fs	.	.	238.0	21.0	137.0	0.0	.	.	Atlas-Indel
TTC40	54777	hgsc.bcm.edu	37	10	134730127	134730127	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	.	NM_001200049	exon17	c.2047delG	p.E683fs	.	.	165.0	10.0	166.0	0.0	.	.	Atlas-Indel
ZNF585B	92285	hgsc.bcm.edu	37	19	37678072	37678072	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ZNF585B	NM_152279	exon5	c.368delT	p.I123fs	.	.	191.0	16.0	206.0	0.0	.	.	Atlas-Indel
MARCH8	220972	hgsc.bcm.edu	37	10	45954578	45954578	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	MARCH8	NM_001002266	exon6	c.562delC	p.Q188fs	.	.	126.0	10.0	196.0	0.0	.	.	Atlas-Indel
C2CD5	9847	hgsc.bcm.edu	37	12	22666279	22666279	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	.	NM_014802	exon9	c.988delC	p.P330fs	.	.	163.0	11.0	180.0	0.0	.	.	Atlas-Indel
ZNF480	147657	hgsc.bcm.edu	37	19	52824876	52824876	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ZNF480	NM_144684	exon5	c.372delT	p.I124fs	.	.	104.0	12.0	127.0	0.0	.	.	Atlas-Indel
SPAG1	6674	hgsc.bcm.edu	37	8	101237506	101237506	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SPAG1	NM_172218	exon14	c.1793delC	p.A598fs	.	.	166.0	11.0	156.0	0.0	.	.	Atlas-Indel
CEP128	145508	hgsc.bcm.edu	37	14	81227952	81227952	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CEP128	NM_152446	exon16	c.2383delC	p.H795fs	.	.	173.0	12.0	234.0	0.0	.	.	Atlas-Indel
NCOA3	8202	hgsc.bcm.edu	37	20	46252672	46252672	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	NCOA3	NM_181659	exon4	c.100delG	p.E34fs	.	.	180.0	11.0	225.0	0.0	.	.	Atlas-Indel
BACH1	571	hgsc.bcm.edu	37	21	30701858	30701858	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	BACH1	NM_206866	exon4	c.1619delA	p.D540fs	.	.	181.0	12.0	301.0	0.0	.	.	Atlas-Indel
LMBRD1	55788	hgsc.bcm.edu	37	6	70411386	70411386	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	LMBRD1	NM_018368	exon11	c.1033delG	p.G345fs	.	.	148.0	10.0	209.0	0.0	.	.	Atlas-Indel
SEZ6	124925	hgsc.bcm.edu	37	17	27284100	27284100	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SEZ6	NM_001098635	exon13	c.2656delT	p.S886fs	.	.	156.0	10.0	196.0	0.0	.	.	Atlas-Indel
IFT52	51098	hgsc.bcm.edu	37	20	42249541	42249541	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	IFT52	NM_016004	exon9	c.743delA	p.N248fs	.	.	208.0	13.0	259.0	0.0	.	.	Atlas-Indel
NKAIN1	79570	hgsc.bcm.edu	37	1	31656681	31656681	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	NKAIN1	NM_024522	exon4	c.455delT	p.L152fs	.	.	171.0	12.0	217.0	0.0	.	.	Atlas-Indel
SRSF12	135295	hgsc.bcm.edu	37	6	89827583	89827583	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SRSF12	NM_080743	exon1	c.25delA	p.N9fs	.	.	140.0	11.0	250.0	0.0	.	.	Atlas-Indel
C17orf75	64149	hgsc.bcm.edu	37	17	30660500	30660500	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	C17orf75	NM_022344	exon9	c.912delA	p.L304fs	.	.	224.0	16.0	234.0	0.0	.	.	Atlas-Indel
TLR10	81793	hgsc.bcm.edu	37	4	38776490	38776490	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	TLR10	NM_030956	exon4	c.723delT	p.N241fs	.	.	120.0	10.0	129.0	0.0	.	.	Atlas-Indel
PLEKHG4B	153478	hgsc.bcm.edu	37	5	163580	163580	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PLEKHG4B	NM_052909	exon11	c.2324delG	p.S775fs	.	.	193.0	12.0	167.0	0.0	.	.	Atlas-Indel
FBXO36	130888	hgsc.bcm.edu	37	2	230841022	230841022	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	FBXO36	NM_174899	exon2	c.161delC	p.A54fs	.	.	150.0	10.0	218.0	0.0	.	.	Atlas-Indel
TMEM200B	399474	hgsc.bcm.edu	37	1	29447550	29447550	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	TMEM200B	NM_001171868	exon2	c.792delC	p.G264fs	.	.	192.0	12.0	236.0	0.0	.	.	Atlas-Indel
PGC	5225	hgsc.bcm.edu	37	6	41708310	41708310	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PGC	NM_002630	exon6	c.687delT	p.G229fs	.	.	147.0	13.0	153.0	0.0	.	.	Atlas-Indel
ZNF280B	140883	hgsc.bcm.edu	37	22	22842771	22842771	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ZNF280B	NM_080764	exon4	c.954delT	p.N318fs	.	.	166.0	12.0	204.0	0.0	.	.	Atlas-Indel
ZNF518B	85460	hgsc.bcm.edu	37	4	10447095	10447095	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	ZNF518B,mouth,carcinoma,0	ZNF518B	NM_053042	exon3	c.859delG	p.D287fs	.	.	164.0	13.0	167.0	0.0	.	.	Atlas-Indel
FAM21B	55747	hgsc.bcm.edu	37	10	47929846	47929846	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	FAM21B	NM_018232	exon19	c.1826delG	p.S609fs	.	.	31.0	10.0	21.0	0.0	.	.	Atlas-Indel
JAK2	3717	hgsc.bcm.edu	37	9	5077574	5077574	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	JAK2	NM_004972	exon15	c.1985delA	p.H662fs	.	.	164.0	10.0	122.0	0.0	.	.	Atlas-Indel
SMARCAD1	56916	hgsc.bcm.edu	37	4	95162076	95162076	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SMARCAD1	NM_001128429	exon6	c.623delG	p.R208fs	.	.	189.0	12.0	278.0	0.0	.	.	Atlas-Indel
ZFYVE9	9372	hgsc.bcm.edu	37	1	52705235	52705235	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ZFYVE9	NM_007324	exon4	c.2145delC	p.T715fs	.	.	155.0	11.0	223.0	0.0	.	.	Atlas-Indel
OGFRL1	79627	hgsc.bcm.edu	37	6	72011155	72011155	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	OGFRL1	NM_024576	exon7	c.758delG	p.S253fs	.	.	156.0	12.0	176.0	0.0	.	.	Atlas-Indel
USP53	54532	hgsc.bcm.edu	37	4	120192499	120192499	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	USP53	NM_019050	exon15	c.1483delG	p.A495fs	.	.	142.0	11.0	166.0	0.0	.	.	Atlas-Indel
KHNYN	23351	hgsc.bcm.edu	37	14	24901276	24901276	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	KHNYN	NM_015299	exon3	c.808delT	p.W270fs	.	.	213.0	14.0	218.0	0.0	.	.	Atlas-Indel
CNOT1	23019	hgsc.bcm.edu	37	16	58621151	58621151	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CNOT1	NM_206999	exon6	c.388delG	p.G130fs	.	.	122.0	12.0	125.0	0.0	.	.	Atlas-Indel
FIP1L1	81608	hgsc.bcm.edu	37	4	54294251	54294251	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	FIP1L1	NM_030917	exon13	c.1074delG	p.P358fs	.	.	192.0	15.0	278.0	0.0	.	.	Atlas-Indel
SLC16A7	9194	hgsc.bcm.edu	37	12	60168856	60168856	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SLC16A7	NM_001270622	exon5	c.779delG	p.G260fs	.	.	157.0	10.0	184.0	0.0	.	.	Atlas-Indel
PLEKHH3	79990	hgsc.bcm.edu	37	17	40823047	40823047	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PLEKHH3	NM_024927	exon9	c.1387delA	p.T463fs	.	.	116.0	10.0	132.0	0.0	.	.	Atlas-Indel
CD97	976	hgsc.bcm.edu	37	19	14508727	14508727	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CD97	NM_078481	exon8	c.798delG	p.P266fs	.	.	175.0	12.0	186.0	0.0	.	.	Atlas-Indel
PLEKHG2	64857	hgsc.bcm.edu	37	19	39906055	39906055	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PLEKHG2	NM_022835	exon4	c.454delA	p.I152fs	.	.	205.0	13.0	218.0	0.0	.	.	Atlas-Indel
POLE2	5427	hgsc.bcm.edu	37	14	50141076	50141076	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	POLE2	NM_001197331	exon4	c.316delT	p.F106fs	.	.	163.0	10.0	236.0	0.0	.	.	Atlas-Indel
SPAG9	9043	hgsc.bcm.edu	37	17	49071274	49071274	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SPAG9	NM_001130528	exon19	c.2250delT	p.N750fs	.	.	192.0	15.0	313.0	0.0	.	.	Atlas-Indel
FLG	2312	hgsc.bcm.edu	37	1	152286885	152286885	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	FLG	NM_002016	exon3	c.478delG	p.E160fs	.	.	232.0	15.0	151.0	0.0	.	.	Atlas-Indel
CFH	3075	hgsc.bcm.edu	37	1	196697534	196697534	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CFH	NM_000186	exon15	c.2294delT	p.L765X	.	.	191.0	12.0	137.0	0.0	.	.	Atlas-Indel
ZFYVE16	9765	hgsc.bcm.edu	37	5	79769620	79769620	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ZFYVE16	NM_001105251	exon17	c.4234delG	p.E1412fs	.	.	167.0	12.0	206.0	0.0	.	.	Atlas-Indel
C10orf120	399814	hgsc.bcm.edu	37	10	124457833	124457833	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	C10orf120	NM_001010912	exon3	c.425delT	p.I142fs	.	.	135.0	10.0	133.0	0.0	.	.	Atlas-Indel
MICAL3	57553	hgsc.bcm.edu	37	22	18364031	18364031	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	MICAL3	NM_001136004	exon17	c.2281delG	p.V761X	.	.	222.0	14.0	258.0	0.0	.	.	Atlas-Indel
TMPRSS6	164656	hgsc.bcm.edu	37	22	37480793	37480793	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	TMPRSS6	NM_153609	exon9	c.1088delA	p.Q363fs	.	.	147.0	10.0	144.0	0.0	.	.	Atlas-Indel
PTPN14	5784	hgsc.bcm.edu	37	1	214588042	214588042	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PTPN14	NM_005401	exon4	c.373delG	p.D125fs	.	.	295.0	20.0	211.0	0.0	.	.	Atlas-Indel
SI	6476	hgsc.bcm.edu	37	3	164710135	164710135	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SI	NM_001041	exon42	c.4893delT	p.G1631fs	.	.	170.0	12.0	189.0	0.0	.	.	Atlas-Indel
PCP4	5121	hgsc.bcm.edu	37	21	41300935	41300935	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PCP4	NM_006198	exon3	c.87delA	p.E29fs	.	.	188.0	12.0	239.0	0.0	.	.	Atlas-Indel
KLF15	28999	hgsc.bcm.edu	37	3	126071137	126071137	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	KLF15	NM_014079	exon2	c.630delC	p.G210fs	.	.	144.0	10.0	182.0	0.0	.	.	Atlas-Indel
CHRNA1	1134	hgsc.bcm.edu	37	2	175622346	175622346	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CHRNA1	NM_001039523	exon5	c.368delT	p.I123fs	.	.	179.0	11.0	253.0	0.0	.	.	Atlas-Indel
ZCCHC11	23318	hgsc.bcm.edu	37	1	52891114	52891114	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ZCCHC11	NM_001009881	exon29	c.4778delT	p.L1593fs	.	.	145.0	11.0	224.0	0.0	.	.	Atlas-Indel
CCDC144A	9720	hgsc.bcm.edu	37	17	16638176	16638176	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	.	NM_014695	exon12	c.2590delC	p.Q864fs	.	.	173.0	13.0	182.0	0.0	.	.	Atlas-Indel
WDR37	22884	hgsc.bcm.edu	37	10	1170240	1170240	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	WDR37	NM_014023	exon12	c.1185delG	p.L395fs	.	.	117.0	11.0	140.0	0.0	.	.	Atlas-Indel
ARFGEF1	10565	hgsc.bcm.edu	37	8	68130371	68130371	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ARFGEF1	NM_006421	exon31	c.4342delG	p.A1448fs	.	.	179.0	13.0	194.0	0.0	.	.	Atlas-Indel
CDC42BPB	9578	hgsc.bcm.edu	37	14	103429414	103429414	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CDC42BPB	NM_006035	exon20	c.2806delT	p.F936fs	.	.	174.0	12.0	244.0	0.0	.	.	Atlas-Indel
LDLRAD4	753	hgsc.bcm.edu	37	18	13612766	13612766	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	.	NM_001003674	exon1	c.62delT	p.L21X	.	.	181.0	11.0	221.0	0.0	.	.	Atlas-Indel
RILPL2	196383	hgsc.bcm.edu	37	12	123907659	123907659	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	RILPL2	NM_145058	exon3	c.538delG	p.D180fs	.	.	255.0	16.0	321.0	0.0	.	.	Atlas-Indel
ZCCHC11	23318	hgsc.bcm.edu	37	1	52991403	52991403	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ZCCHC11	NM_001009881	exon2	c.551delT	p.I184fs	.	.	281.0	21.0	326.0	0.0	.	.	Atlas-Indel
ADH7	131	hgsc.bcm.edu	37	4	100348965	100348965	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ADH7	NM_001166504	exon5	c.590delC	p.S197fs	.	.	144.0	10.0	223.0	0.0	.	.	Atlas-Indel
KLHDC1	122773	hgsc.bcm.edu	37	14	50190646	50190646	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	KLHDC1	NM_172193	exon5	c.458delG	p.C153fs	.	.	143.0	10.0	178.0	0.0	.	.	Atlas-Indel
TLR3	7098	hgsc.bcm.edu	37	4	186998188	186998188	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	TLR3	NM_003265	exon2	c.414delT	p.I138fs	.	.	119.0	10.0	150.0	0.0	.	.	Atlas-Indel
ITIH5	80760	hgsc.bcm.edu	37	10	7618714	7618714	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ITIH5	NM_001001851	exon10	c.1681delA	p.R561fs	.	.	144.0	11.0	219.0	0.0	.	.	Atlas-Indel
DOCK6	57572	hgsc.bcm.edu	37	19	11363499	11363499	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	DOCK6	NM_020812	exon3	c.269delG	p.R90fs	.	.	165.0	11.0	231.0	0.0	.	.	Atlas-Indel
PPIC	5480	hgsc.bcm.edu	37	5	122364469	122364469	+	Splice_Site	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PPIC	NM_000943	exon4	c.325+2G>-	.	.	.	164.0	10.0	211.0	0.0	.	.	Atlas-Indel
KALRN	8997	hgsc.bcm.edu	37	3	124174076	124174076	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	KALRN	NM_003947	exon22	c.3598delG	p.E1200fs	.	.	140.0	10.0	173.0	0.0	.	.	Atlas-Indel
ZNF75A	7627	hgsc.bcm.edu	37	16	3367731	3367731	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ZNF75A	NM_153028	exon6	c.752delG	p.G251fs	.	.	208.0	13.0	245.0	0.0	.	.	Atlas-Indel
SPAST	6683	hgsc.bcm.edu	37	2	32340780	32340780	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SPAST	NM_014946	exon6	c.879delG	p.P293fs	.	.	150.0	10.0	171.0	0.0	.	.	Atlas-Indel
ABHD3	171586	hgsc.bcm.edu	37	18	19231648	19231648	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ABHD3	NM_138340	exon9	c.1135delC	p.L379fs	.	.	139.0	12.0	228.0	0.0	.	.	Atlas-Indel
CYP26B1	56603	hgsc.bcm.edu	37	2	72359653	72359653	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CYP26B1	NM_019885	exon6	c.1243delG	p.D415fs	.	.	202.0	14.0	290.0	0.0	.	.	Atlas-Indel
MPDZ	8777	hgsc.bcm.edu	37	9	13123168	13123168	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	MPDZ	NM_003829	exon36	c.4938delT	p.G1646fs	.	.	145.0	10.0	202.0	0.0	.	.	Atlas-Indel
TTLL2	83887	hgsc.bcm.edu	37	6	167755064	167755064	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	TTLL2	NM_031949	exon3	c.1675delG	p.V559fs	.	.	186.0	12.0	233.0	0.0	.	.	Atlas-Indel
KIF21B	23046	hgsc.bcm.edu	37	1	200959829	200959829	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	KIF21B	NM_017596	exon19	c.2711delC	p.A904fs	.	.	196.0	13.0	149.0	0.0	.	.	Atlas-Indel
GK5	256356	hgsc.bcm.edu	37	3	141896386	141896386	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	GK5	NM_001039547	exon12	c.1082delT	p.M361fs	.	.	191.0	12.0	269.0	0.0	.	.	Atlas-Indel
BNIP2	663	hgsc.bcm.edu	37	15	59970126	59970126	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	BNIP2	NM_004330	exon5	c.820delG	p.V274fs	.	.	204.0	13.0	259.0	0.0	.	.	Atlas-Indel
POLA1	5422	hgsc.bcm.edu	37	X	24745091	24745091	+	Frame_Shift_Del	DEL	T	T	-	rs34146393		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	POLA1	NM_016937	exon14	c.1415delC	p.T472fs	.	.	164.0	10.0	197.0	0.0	.	.	Atlas-Indel
HNRNPU	3192	hgsc.bcm.edu	37	1	245027581	245027581	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	HNRNPU	NM_004501	exon1	c.30delG	p.K10fs	.	.	316.0	19.0	267.0	0.0	.	.	Atlas-Indel
PGBD2	267002	hgsc.bcm.edu	37	1	249211954	249211954	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PGBD2	NM_170725	exon3	c.1170delG	p.L390fs	.	.	229.0	14.0	158.0	0.0	.	.	Atlas-Indel
B3GNT4	79369	hgsc.bcm.edu	37	12	122691000	122691000	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	B3GNT4	NM_030765	exon3	c.201delT	p.A67fs	.	.	138.0	10.0	227.0	0.0	.	.	Atlas-Indel
TNXB	7148	hgsc.bcm.edu	37	6	32036432	32036432	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	TNXB	NM_019105	exon17	c.5956delA	p.I1986fs	.	.	190.0	12.0	215.0	0.0	.	.	Atlas-Indel
ITGA4	3676	hgsc.bcm.edu	37	2	182339748	182339748	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ITGA4	NM_000885	exon3	c.380delT	p.L127fs	.	.	250.0	15.0	322.0	0.0	.	.	Atlas-Indel
GSG1	83445	hgsc.bcm.edu	37	12	13237891	13237891	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	GSG1	NM_001080555	exon7	c.1034delC	p.A345fs	.	.	209.0	13.0	342.0	0.0	.	.	Atlas-Indel
EPHA8	2046	hgsc.bcm.edu	37	1	22927800	22927800	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	EPHA8	NM_020526	exon16	c.2736delA	p.P912fs	.	.	222.0	14.0	271.0	0.0	.	.	Atlas-Indel
SWT1	54823	hgsc.bcm.edu	37	1	185143640	185143640	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SWT1	NM_017673	exon5	c.360delT	p.T120fs	.	.	238.0	15.0	207.0	0.0	.	.	Atlas-Indel
ZNF71	58491	hgsc.bcm.edu	37	19	57133366	57133366	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ZNF71	NM_021216	exon3	c.710delC	p.T237fs	.	.	163.0	10.0	239.0	0.0	.	.	Atlas-Indel
INTS1	26173	hgsc.bcm.edu	37	7	1517412	1517412	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	.	NM_001080453	exon34	c.4792delA	p.K1598fs	.	.	195.0	13.0	177.0	0.0	.	.	Atlas-Indel
MIR205HG	642587	hgsc.bcm.edu	37	1	209602687	209602687	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	.	NM_001104548	exon2	c.44delG	p.G15fs	.	.	195.0	14.0	164.0	0.0	.	.	Atlas-Indel
C3orf38	285237	hgsc.bcm.edu	37	3	88205437	88205437	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	C3orf38	NM_173824	exon3	c.641delG	p.S214fs	.	.	143.0	10.0	189.0	0.0	.	.	Atlas-Indel
TNFSF11	8600	hgsc.bcm.edu	37	13	43180938	43180938	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	TNFSF11	NM_003701	exon5	c.837delA	p.G279fs	.	.	194.0	13.0	303.0	0.0	.	.	Atlas-Indel
C16orf71	146562	hgsc.bcm.edu	37	16	4797357	4797357	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	C16orf71	NM_139170	exon9	c.1293delG	p.G431fs	.	.	191.0	12.0	296.0	0.0	.	.	Atlas-Indel
DPP6	1804	hgsc.bcm.edu	37	7	154263979	154263979	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	DPP6	NM_130797	exon5	c.604delC	p.L202fs	.	.	139.0	10.0	115.0	0.0	.	.	Atlas-Indel
PCGF2	7703	hgsc.bcm.edu	37	17	36891838	36891838	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PCGF2	NM_007144	exon11	c.674delT	p.L225fs	.	.	133.0	10.0	124.0	0.0	.	.	Atlas-Indel
FIBCD1	84929	hgsc.bcm.edu	37	9	133799700	133799700	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	FIBCD1	NM_032843	exon3	c.637delC	p.L213fs	.	.	131.0	12.0	185.0	0.0	.	.	Atlas-Indel
CENPI	2491	hgsc.bcm.edu	37	X	100375427	100375427	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CENPI	NM_006733	exon6	c.627delC	p.T209fs	.	.	251.0	18.0	253.0	0.0	.	.	Atlas-Indel
SENP7	57337	hgsc.bcm.edu	37	3	101051684	101051684	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SENP7	NM_020654	exon18	c.2504delG	p.R835fs	.	.	223.0	15.0	264.0	0.0	.	.	Atlas-Indel
PDPK1	5170	hgsc.bcm.edu	37	16	2607955	2607955	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PDPK1	NM_001261816	exon2	c.275delC	p.S92fs	.	.	208.0	16.0	339.0	0.0	.	.	Atlas-Indel
SYNGAP1	8831	hgsc.bcm.edu	37	6	33388070	33388070	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SYNGAP1	NM_006772	exon1	c.28delC	p.R10fs	.	.	193.0	13.0	264.0	0.0	.	.	Atlas-Indel
GREM1	26585	hgsc.bcm.edu	37	15	33022990	33022990	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	GREM1	NM_013372	exon2	c.98delT	p.I33fs	.	.	114.0	11.0	143.0	0.0	.	.	Atlas-Indel
SPIN2B	474343	hgsc.bcm.edu	37	X	57146927	57146927	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SPIN2B	NM_001006683	exon2	c.137delG	p.R46fs	.	.	161.0	10.0	275.0	0.0	.	.	Atlas-Indel
COL16A1	1307	hgsc.bcm.edu	37	1	32136240	32136240	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	COL16A1	NM_001856	exon49	c.3159delA	p.P1053fs	.	.	193.0	12.0	187.0	0.0	.	.	Atlas-Indel
METTL4	64863	hgsc.bcm.edu	37	18	2544668	2544668	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	METTL4	NM_022840	exon7	c.1166delC	p.T389fs	.	.	165.0	12.0	257.0	0.0	.	.	Atlas-Indel
TMEM126B	55863	hgsc.bcm.edu	37	11	85346800	85346800	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	TMEM126B	NM_018480	exon4	c.486delT	p.T162fs	.	.	161.0	10.0	180.0	0.0	.	.	Atlas-Indel
UGT1A3	54659	hgsc.bcm.edu	37	2	234638491	234638492	+	Frame_Shift_Del	DEL	AG	AG	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	AG	AG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	UGT1A3	NM_019093	exon1	c.718_719del	p.240_240del	.	.	326.0	72.0	471.0	0.0	.	.	Atlas-Indel
GALNT12	79695	hgsc.bcm.edu	37	9	101606479	101606479	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	GALNT12	NM_024642	exon8	c.1445delT	p.M482fs	.	.	149.0	10.0	249.0	0.0	.	.	Atlas-Indel
LRFN4	78999	hgsc.bcm.edu	37	11	66627620	66627620	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	LRFN4	NM_024036	exon2	c.1861delC	p.R621fs	.	.	147.0	10.0	98.0	0.0	.	.	Atlas-Indel
SMARCC1	6599	hgsc.bcm.edu	37	3	47703877	47703877	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SMARCC1	NM_003074	exon20	c.2106delG	p.L702fs	.	.	183.0	12.0	278.0	0.0	.	.	Atlas-Indel
PARP8	79668	hgsc.bcm.edu	37	5	50129819	50129819	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PARP8	NM_001178055	exon25	c.2313delG	p.Q771fs	.	.	157.0	11.0	242.0	0.0	.	.	Atlas-Indel
PAPOLA	10914	hgsc.bcm.edu	37	14	97022557	97022557	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PAPOLA	NM_032632	exon19	c.1810delA	p.I604fs	.	.	169.0	13.0	209.0	0.0	.	.	Atlas-Indel
KAT6A	7994	hgsc.bcm.edu	37	8	41792228	41792228	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	.	NM_006766	exon17	c.3511delC	p.P1171fs	.	.	194.0	14.0	252.0	0.0	.	.	Atlas-Indel
PDZD2	23037	hgsc.bcm.edu	37	5	32089076	32089076	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PDZD2	NM_178140	exon19	c.5521delC	p.Q1841fs	.	.	145.0	10.0	128.0	0.0	.	.	Atlas-Indel
CNTNAP5	129684	hgsc.bcm.edu	37	2	125261880	125261880	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CNTNAP5	NM_130773	exon8	c.1070delC	p.T357fs	.	.	173.0	12.0	223.0	0.0	.	.	Atlas-Indel
THAP9	79725	hgsc.bcm.edu	37	4	83827648	83827648	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	THAP9	NM_024672	exon3	c.447delC	p.S149fs	.	.	239.0	18.0	339.0	0.0	.	.	Atlas-Indel
OLFML3	56944	hgsc.bcm.edu	37	1	114524304	114524304	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	OLFML3	NM_020190	exon3	c.1133delA	p.N378fs	.	.	181.0	11.0	214.0	0.0	.	.	Atlas-Indel
FGF9	2254	hgsc.bcm.edu	37	13	22246178	22246178	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	FGF9	NM_002010	exon1	c.126delA	p.A42fs	.	.	175.0	12.0	227.0	0.0	.	.	Atlas-Indel
IQGAP3	128239	hgsc.bcm.edu	37	1	156503821	156503821	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	IQGAP3	NM_178229	exon30	c.3854delA	p.E1285fs	.	.	168.0	11.0	127.0	0.0	.	.	Atlas-Indel
KIAA1841	84542	hgsc.bcm.edu	37	2	61308630	61308630	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	KIAA1841	NM_032506	exon7	c.713delT	p.L238X	.	.	217.0	15.0	252.0	0.0	.	.	Atlas-Indel
EFTUD1	79631	hgsc.bcm.edu	37	15	82512000	82512000	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	EFTUD1	NM_024580	exon14	c.1605delA	p.L535fs	.	.	245.0	19.0	249.0	0.0	.	.	Atlas-Indel
ATG13	9776	hgsc.bcm.edu	37	11	46670721	46670721	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ATG13	NM_001142673	exon6	c.304delG	p.E102fs	.	.	192.0	12.0	265.0	0.0	.	.	Atlas-Indel
HSPB3	8988	hgsc.bcm.edu	37	5	53751734	53751734	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	HSPB3	NM_006308	exon1	c.114delT	p.P38fs	.	.	147.0	11.0	201.0	0.0	.	.	Atlas-Indel
SWT1	54823	hgsc.bcm.edu	37	1	185175808	185175808	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SWT1	NM_017673	exon13	c.1884delT	p.F628fs	.	.	181.0	11.0	158.0	0.0	.	.	Atlas-Indel
TMEM168	64418	hgsc.bcm.edu	37	7	112424114	112424114	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	TMEM168	NM_022484	exon2	c.768delG	p.L256fs	.	.	154.0	11.0	113.0	0.0	.	.	Atlas-Indel
THOC2	57187	hgsc.bcm.edu	37	X	122802060	122802060	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	THOC2	NM_001081550	exon10	c.968delT	p.M323fs	.	.	163.0	10.0	220.0	0.0	.	.	Atlas-Indel
AHNAK	79026	hgsc.bcm.edu	37	11	62288928	62288928	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	AHNAK	NM_001620	exon5	c.12962delT	p.M4321fs	.	.	163.0	10.0	255.0	0.0	.	.	Atlas-Indel
AP4B1	10717	hgsc.bcm.edu	37	1	114442999	114442999	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	AP4B1	NM_006594	exon6	c.642delC	p.G214fs	.	.	188.0	13.0	238.0	0.0	.	.	Atlas-Indel
CENPC1	1060	hgsc.bcm.edu	37	4	68374713	68374713	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CENPC1	NM_001812	exon10	c.1724delC	p.T575fs	.	.	205.0	13.0	208.0	0.0	.	.	Atlas-Indel
ANKRD26	22852	hgsc.bcm.edu	37	10	27337888	27337888	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ANKRD26	NM_014915	exon17	c.1657delC	p.H553fs	.	.	198.0	15.0	270.0	0.0	.	.	Atlas-Indel
UPF2	26019	hgsc.bcm.edu	37	10	11997384	11997384	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	UPF2	NM_080599	exon14	c.2698delG	p.G900fs	.	.	127.0	10.0	202.0	0.0	.	.	Atlas-Indel
USH2A	7399	hgsc.bcm.edu	37	1	215821896	215821896	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	USH2A	NM_206933	exon66	c.14557delA	p.M4853fs	.	.	215.0	13.0	120.0	0.0	.	.	Atlas-Indel
PREX2	80243	hgsc.bcm.edu	37	8	68995503	68995503	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PREX2	NM_025170	exon18	c.1906delA	p.I636fs	.	.	159.0	10.0	157.0	0.0	.	.	Atlas-Indel
SH3GL1	6455	hgsc.bcm.edu	37	19	4364123	4364123	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SH3GL1	NM_003025	exon5	c.428delT	p.L143fs	.	.	206.0	14.0	299.0	0.0	.	.	Atlas-Indel
PKHD1	5314	hgsc.bcm.edu	37	6	51927342	51927342	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PKHD1	NM_170724	exon14	c.1094delG	p.W365fs	.	.	162.0	10.0	216.0	0.0	.	.	Atlas-Indel
LYST	1130	hgsc.bcm.edu	37	1	235964220	235964220	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	LYST	NM_000081	exon9	c.3891delG	p.L1297fs	.	.	151.0	12.0	136.0	0.0	.	.	Atlas-Indel
MAP3K4	4216	hgsc.bcm.edu	37	6	161455391	161455391	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	MAP3K4	NM_006724	exon2	c.252delT	p.S84fs	.	.	157.0	10.0	195.0	0.0	.	.	Atlas-Indel
ABCB4	5244	hgsc.bcm.edu	37	7	87079305	87079305	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ABCB4	NM_018849	exon8	c.813delC	p.G271fs	.	.	297.0	18.0	305.0	0.0	.	.	Atlas-Indel
PARN	5073	hgsc.bcm.edu	37	16	14576541	14576541	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PARN	NM_002582	exon22	c.1625delA	p.Q542fs	.	.	200.0	15.0	317.0	0.0	.	.	Atlas-Indel
LRP1	4035	hgsc.bcm.edu	37	12	57550002	57550002	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	LRP1	NM_002332	exon9	c.1352delA	p.Q451fs	.	.	177.0	11.0	225.0	0.0	.	.	Atlas-Indel
AGBL2	79841	hgsc.bcm.edu	37	11	47721054	47721054	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	AGBL2	NM_024783	exon8	c.639delG	p.K213fs	.	.	149.0	10.0	198.0	0.0	.	.	Atlas-Indel
INHBC	3626	hgsc.bcm.edu	37	12	57843500	57843500	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	INHBC	NM_005538	exon2	c.753delG	p.E251fs	.	.	177.0	12.0	257.0	0.0	.	.	Atlas-Indel
USP31	57478	hgsc.bcm.edu	37	16	23093870	23093870	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	USP31	NM_020718	exon12	c.1840delG	p.D614fs	.	.	147.0	10.0	253.0	0.0	.	.	Atlas-Indel
CCDC80	151887	hgsc.bcm.edu	37	3	112357154	112357154	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CCDC80	NM_199512	exon2	c.1600delG	p.A534fs	.	.	177.0	11.0	226.0	0.0	.	.	Atlas-Indel
FBXO5	26271	hgsc.bcm.edu	37	6	153296240	153296240	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	FBXO5	NM_012177	exon2	c.621delG	p.K207fs	.	.	148.0	11.0	243.0	0.0	.	.	Atlas-Indel
RUSC2	9853	hgsc.bcm.edu	37	9	35557957	35557957	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	RUSC2	NM_014806	exon6	c.3029delA	p.H1010fs	.	.	148.0	10.0	204.0	0.0	.	.	Atlas-Indel
ZNF646	9726	hgsc.bcm.edu	37	16	31092588	31092588	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ZNF646	NM_014699	exon2	c.4942delA	p.T1648fs	.	.	165.0	10.0	230.0	0.0	.	.	Atlas-Indel
AMER3	205147	hgsc.bcm.edu	37	2	131520663	131520663	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	.	NM_001105195	exon2	c.1017delA	p.Q339fs	.	.	157.0	10.0	221.0	0.0	.	.	Atlas-Indel
BRIX1	55299	hgsc.bcm.edu	37	5	34925376	34925376	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	BRIX1	NM_018321	exon10	c.837delG	p.E279fs	.	.	143.0	10.0	181.0	0.0	.	.	Atlas-Indel
HSP90AA1	3320	hgsc.bcm.edu	37	14	102550137	102550137	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	HSP90AA1	NM_001017963	exon8	c.1698delC	p.N566fs	.	.	209.0	13.0	266.0	0.0	.	.	Atlas-Indel
MAPKBP1	23005	hgsc.bcm.edu	37	15	42092080	42092080	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	MAPKBP1	NM_001128608	exon3	c.173delA	p.D58fs	.	.	158.0	14.0	254.0	0.0	.	.	Atlas-Indel
SLC9A2	6549	hgsc.bcm.edu	37	2	103300596	103300596	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SLC9A2	NM_003048	exon5	c.1225delG	p.V409fs	.	.	177.0	11.0	268.0	0.0	.	.	Atlas-Indel
SEMA6D	80031	hgsc.bcm.edu	37	15	48056088	48056088	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SEMA6D	NM_153617	exon10	c.788delT	p.M263fs	.	.	193.0	12.0	301.0	0.0	.	.	Atlas-Indel
MAP2	4133	hgsc.bcm.edu	37	2	210558065	210558065	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	MAP2	NM_002374	exon7	c.1170delA	p.L390fs	.	.	182.0	11.0	260.0	0.0	.	.	Atlas-Indel
DYNC1I1	1780	hgsc.bcm.edu	37	7	95442635	95442635	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	DYNC1I1	NM_004411	exon4	c.350delT	p.L117fs	.	.	136.0	10.0	121.0	0.0	.	.	Atlas-Indel
ATF4	468	hgsc.bcm.edu	37	22	39917489	39917489	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ATF4	NM_001675	exon1	c.38delT	p.V13fs	.	.	181.0	11.0	215.0	0.0	.	.	Atlas-Indel
POC5	134359	hgsc.bcm.edu	37	5	74998581	74998581	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	POC5	NM_001099271	exon5	c.363delC	p.F121fs	.	.	173.0	15.0	258.0	0.0	.	.	Atlas-Indel
DNAJB12	54788	hgsc.bcm.edu	37	10	74104834	74104834	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	DNAJB12	NM_017626	exon2	c.288delA	p.P96fs	.	.	155.0	10.0	167.0	0.0	.	.	Atlas-Indel
ERBB2IP	55914	hgsc.bcm.edu	37	5	65374265	65374265	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ERBB2IP	NM_001253699	exon26	c.4166delG	p.S1389fs	.	.	216.0	13.0	309.0	0.0	.	.	Atlas-Indel
CDC42EP1	11135	hgsc.bcm.edu	37	22	37964414	37964414	+	Missense_Mutation	SNP	C	C	A	rs77417880	byfrequency	TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CDC42EP1	NM_152243	exon3	c.C763A	p.P255T	CCAGCGCCTGCTG	.	83.0	29.0	5.0	0.0	C|0.933;A|0.067	.	Atlas-SNP
SALL1	6299	hgsc.bcm.edu	37	16	51175655	51175655	+	Missense_Mutation	SNP	C	C	T	rs199760974		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SALL1	NM_002968	exon2	c.G478A	p.G160S	CGCCGCCGCTGCT	.	169.0	19.0	212.0	0.0	.	.	Atlas-SNP
MIR205HG	642587	hgsc.bcm.edu	37	1	209605666	209605666	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	.	NM_001104548	exon4	c.C281G	p.A94G	CAGCAGCAGCAGC	.	80.0	11.0	51.0	0.0	.	.	Atlas-SNP
NPVF	64111	hgsc.bcm.edu	37	7	25266573	25266573	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	NPVF	NM_022150	exon2	c.A211G	p.I71V	TCTTAATAACATT	.	61.0	25.0	3.0	0.0	.	.	Atlas-SNP
RFC5	5985	hgsc.bcm.edu	37	12	118464813	118464813	+	Silent	SNP	A	A	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	RFC5	NM_007370	exon8	c.A783G	p.T261T	CACCACAGCCTAC	.	68.0	26.0	116.0	0.0	.	.	Atlas-SNP
LCE4A	199834	hgsc.bcm.edu	37	1	152681680	152681680	+	Silent	SNP	C	C	T	rs200890315		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	LCE4A	NM_178356	exon1	c.C129T	p.S43S	TGGCTCCAGCTCT	.	273.0	16.0	211.0	0.0	.	.	Atlas-SNP
CD109	135228	hgsc.bcm.edu	37	6	74502402	74502402	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CD109	NM_133493	exon23	c.T2755C	p.Y919H	ATGCCTTATGGCT	.	99.0	4.0	106.0	0.0	.	.	Atlas-SNP
LTF	4057	hgsc.bcm.edu	37	3	46501284	46501284	+	Silent	SNP	C	C	T	rs76787706		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	LTF	NM_002343	exon2	c.G69A	p.R23R	AACACTCCTCCTA	.	155.0	12.0	254.0	0.0	.	.	Atlas-SNP
TMPRSS13	84000	hgsc.bcm.edu	37	11	117789312	117789312	+	Missense_Mutation	SNP	C	C	A	rs200637340	alternate_allele	TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	TMPRSS13	NM_001206790	exon2	c.G263T	p.R88L	GATGCCCGGGCTG	.	158.0	14.0	222.0	0.0	C|0.999;T|0.000	.	Atlas-SNP
OBSCN	84033	hgsc.bcm.edu	37	1	228560756	228560756	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	OBSCN	NM_001271223	exon105	c.C25148G	p.S8383C	ACATCTCCCGGAT	.	183.0	40.0	125.0	0.0	.	.	Atlas-SNP
FBXL4	26235	hgsc.bcm.edu	37	6	99328458	99328458	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	FBXL4	NM_012160	exon7	c.C1360A	p.Q454K	GGTGCTGAAGCTC	.	76.0	29.0	78.0	0.0	.	.	Atlas-SNP
PCNXL2	80003	hgsc.bcm.edu	37	1	233334767	233334767	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PCNXL2	NM_014801	exon15	c.G2984T	p.G995V	GTTATCCCAGACA	.	468.0	304.0	399.0	0.0	.	.	Atlas-SNP
CNTRL	11064	hgsc.bcm.edu	37	9	123935974	123935974	+	Missense_Mutation	SNP	G	G	A	rs151059757	byfrequency	TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CNTRL	NM_007018	exon40	c.G6706A	p.A2236T	GGAGAAGCACTCC	.	80.0	31.0	109.0	0.0	G|1.000;A|0.000	.	Atlas-SNP
PRICKLE1	144165	hgsc.bcm.edu	37	12	42858256	42858256	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PRICKLE1	NM_001144882	exon7	c.T1580C	p.L527P	GGTTTCAGGTCTG	.	264.0	98.0	328.0	0.0	.	.	Atlas-SNP
PKP3	11187	hgsc.bcm.edu	37	11	397014	397014	+	Silent	SNP	G	G	A	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PKP3	NM_007183	exon3	c.G513A	p.G171G	GGTTGGGAGCCGG	.	40.0	17.0	37.0	0.0	.	.	Atlas-SNP
COL2A1	1280	hgsc.bcm.edu	37	12	48387630	48387630	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	COL2A1	NM_001844	exon14	c.G886A	p.D296N	CACCGTCCAGGCC	.	169.0	71.0	253.0	0.0	.	.	Atlas-SNP
ZNF2	7549	hgsc.bcm.edu	37	2	95847047	95847047	+	Silent	SNP	G	G	A	rs112887855		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ZNF2	NM_021088	exon5	c.G474A	p.R158R	GCGGCGGCGACGG	.	81.0	7.0	111.0	0.0	G|0.500;A|0.500	.	Atlas-SNP
PCDHGA2	56113	hgsc.bcm.edu	37	5	140720687	140720687	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PCDHGA2	NM_018915	exon1	c.C2149T	p.R717W	AGGCTGCGGCGCT	.	342.0	132.0	399.0	0.0	.	.	Atlas-SNP
SSPO	23145	hgsc.bcm.edu	37	7	149476671	149476671	+	Missense_Mutation	SNP	T	T	C	rs201032059		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	.	NM_198455	exon10	c.T1121C	p.L374P	AGCCCCTGGGGCT	.	292.0	26.0	361.0	0.0	.	.	Atlas-SNP
OR2AT4	341152	hgsc.bcm.edu	37	11	74799967	74799967	+	Silent	SNP	G	G	A	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	OR2AT4	NM_001005285	exon1	c.C792T	p.Y264Y	GGCCACGTAGGCT	.	146.0	69.0	235.0	0.0	.	.	Atlas-SNP
TMEM237	65062	hgsc.bcm.edu	37	2	202501540	202501540	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	.	NM_001044385	exon4	c.A205T	p.T69S	CTTTAGTTGATGG	.	44.0	19.0	53.0	0.0	.	.	Atlas-SNP
NCL	4691	hgsc.bcm.edu	37	2	232325426	232325426	+	Missense_Mutation	SNP	A	A	T	rs74931394		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	NCL	NM_005381	exon4	c.T765A	p.D255E	ATCATCATCTTCA	.	235.0	18.0	321.0	0.0	.	.	Atlas-SNP
CACNB2	783	hgsc.bcm.edu	37	10	18439889	18439889	+	Silent	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CACNB2	NM_201597	exon2	c.T198C	p.N66N	CTCAAATAGTTTT	.	127.0	48.0	169.0	0.0	.	.	Atlas-SNP
DLGAP2	9228	hgsc.bcm.edu	37	8	1497492	1497492	+	Silent	SNP	C	C	T	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	DLGAP2	NM_004745	exon2	c.C633T	p.P211P	CCGGCCCGGCATG	.	61.0	42.0	103.0	0.0	.	.	Atlas-SNP
ACIN1	22985	hgsc.bcm.edu	37	14	23549896	23549896	+	Silent	SNP	C	C	T	rs141522105	byfrequency	TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ACIN1	NM_001164814	exon6	c.G822A	p.E274E	CTCCTCCTCTTCT	.	121.0	14.0	143.0	0.0	C|1.000;T|0.000	.	Atlas-SNP
PPA1	5464	hgsc.bcm.edu	37	10	71969401	71969401	+	Silent	SNP	T	T	C	rs150430650		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PPA1	NM_021129	exon7	c.A552G	p.E184E	AGTAGCTTCTAAG	.	251.0	18.0	337.0	0.0	.	.	Atlas-SNP
ZNF429	353088	hgsc.bcm.edu	37	19	21719985	21719985	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ZNF429	NM_001001415	exon4	c.C1130A	p.A377D	GCAAAGCTTTTAA	.	28.0	9.0	33.0	0.0	.	.	Atlas-SNP
MUC4	4585	hgsc.bcm.edu	37	3	195518110	195518110	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	MUC4	NM_018406	exon2	c.C341T	p.A114V	GGAGGAGCTGTCT	.	188.0	15.0	211.0	0.0	.	.	Atlas-SNP
TCEB3B	51224	hgsc.bcm.edu	37	18	44560926	44560926	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	TCEB3B	NM_016427	exon1	c.T710A	p.L237X	GCACACAAGGGGC	.	224.0	100.0	255.0	1.0	.	.	Atlas-SNP
TCEAL6	158931	hgsc.bcm.edu	37	X	101395774	101395774	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	TCEAL6	NM_001006938	exon3	c.A530G	p.D177G	CCGTTGTCCCCTT	.	170.0	12.0	108.0	0.0	.	.	Atlas-SNP
LCE4A	199834	hgsc.bcm.edu	37	1	152681679	152681679	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	LCE4A	NM_178356	exon1	c.C128G	p.S43C	GTGGCTCCAGCTC	.	271.0	15.0	217.0	0.0	.	.	Atlas-SNP
CLECL1	160365	hgsc.bcm.edu	37	12	9885713	9885713	+	Missense_Mutation	SNP	A	A	T	rs200639830		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CLECL1	NM_001267701	exon1	c.T148A	p.Y50N	ATAAGTAAATTGA	.	104.0	11.0	139.0	0.0	.	.	Atlas-SNP
ACIN1	22985	hgsc.bcm.edu	37	14	23549881	23549881	+	Silent	SNP	C	C	T	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ACIN1	NM_001164814	exon6	c.G837A	p.E279E	TTCTTCCTCCTCC	.	102.0	12.0	123.0	0.0	.	.	Atlas-SNP
CLTCL1	8218	hgsc.bcm.edu	37	22	19189005	19189005	+	Splice_Site	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CLTCL1	NM_001835	exon24	c.3602-2A>G	.	TCCAACTACGGAT	.	98.0	8.0	144.0	0.0	.	.	Atlas-SNP
METTL18	92342	hgsc.bcm.edu	37	1	169762228	169762228	+	Silent	SNP	T	T	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	METTL18	NM_033418	exon2	c.A609C	p.I203I	TGCAGTTATACCT	.	291.0	54.0	208.0	0.0	.	.	Atlas-SNP
MAPKAPK5	8550	hgsc.bcm.edu	37	12	112330837	112330837	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	MAPKAPK5	NM_139078	exon14	c.A1394T	p.E465V	TAGAAGAGCAAAC	.	95.0	40.0	143.0	0.0	.	.	Atlas-SNP
PHLDB1	23187	hgsc.bcm.edu	37	11	118526376	118526376	+	Silent	SNP	C	C	T	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PHLDB1	NM_001144758	exon21	c.C3936T	p.Y1312Y	GTACTACGACCAC	.	64.0	27.0	88.0	0.0	.	.	Atlas-SNP
GRIA3	2892	hgsc.bcm.edu	37	X	122336604	122336604	+	Missense_Mutation	SNP	C	C	G	rs72609489		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	GRIA3	NM_001256743	exon3	c.C385G	p.P129A	GGTGGGCCCGCCA	.	62.0	7.0	102.0	0.0	.	.	Atlas-SNP
TEAD4	7004	hgsc.bcm.edu	37	12	3126664	3126664	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	TEAD4	NM_003213	exon6	c.G455A	p.R152Q	TCGCCCGGGGCCC	.	197.0	78.0	304.0	0.0	.	.	Atlas-SNP
WHSC1L1	54904	hgsc.bcm.edu	37	8	38148152	38148152	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	WHSC1L1	NM_023034	exon17	c.A2959T	p.N987Y	GGATGTTCAGTGG	.	149.0	53.0	173.0	0.0	.	.	Atlas-SNP
RFC5	5985	hgsc.bcm.edu	37	12	118464801	118464801	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	RFC5	NM_007370	exon8	c.A771C	p.Q257H	GAATCAAGATTTC	.	72.0	30.0	123.0	0.0	.	.	Atlas-SNP
CYFIP2	26999	hgsc.bcm.edu	37	5	156721860	156721860	+	Silent	SNP	C	C	A	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CYFIP2	NM_001037332	exon4	c.C276A	p.A92A	CCGGGCCATTCCC	.	231.0	17.0	330.0	0.0	.	.	Atlas-SNP
MED12L	116931	hgsc.bcm.edu	37	3	151107817	151107817	+	Silent	SNP	C	C	A	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	MED12L	NM_053002	exon36	c.C5397A	p.I1799I	GCCTATCTCCTCC	.	86.0	32.0	166.0	0.0	.	.	Atlas-SNP
ACIN1	22985	hgsc.bcm.edu	37	14	23548798	23548798	+	Missense_Mutation	SNP	C	C	A	rs74036910	byfrequency	TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ACIN1	NM_001164814	exon6	c.G1920T	p.R640S	ACGTGACCTTGAT	.	245.0	17.0	292.0	0.0	C|0.985;A|0.015	.	Atlas-SNP
NEFH	4744	hgsc.bcm.edu	37	22	29885722	29885722	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	NEFH	NM_021076	exon4	c.T2093A	p.V698E	CCCCAGTGAAGGA	.	165.0	9.0	204.0	0.0	.	.	Atlas-SNP
GFM2	84340	hgsc.bcm.edu	37	5	74021852	74021852	+	Missense_Mutation	SNP	A	A	T	rs76339998	byfrequency	TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	GFM2	NM_032380	exon18	c.T1826A	p.F609Y	TACTCAAACTCAA	.	87.0	12.0	117.0	0.0	A|0.963;T|0.037	.	Atlas-SNP
MGA	23269	hgsc.bcm.edu	37	15	42035016	42035016	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	MGA	NM_001164273	exon15	c.G4858A	p.D1620N	ATTTCTGACGTGG	.	48.0	20.0	70.0	0.0	.	.	Atlas-SNP
NRD1	4898	hgsc.bcm.edu	37	1	52306079	52306079	+	Missense_Mutation	SNP	T	T	A	rs62648104		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	NRD1	NM_001101662	exon2	c.A449T	p.E150V	TCTTCCTCCACCT	.	248.0	21.0	375.0	0.0	T|0.024;A|0.976	.	Atlas-SNP
MST1	4485	hgsc.bcm.edu	37	3	49722913	49722913	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	MST1	NM_020998	exon12	c.G1414A	p.D472N	GGGGGTCCAGGAT	.	419.0	22.0	365.0	0.0	.	.	Atlas-SNP
PKP4	8502	hgsc.bcm.edu	37	2	159499020	159499020	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PKP4	NM_001005476	exon11	c.A1718G	p.K573R	GAATCAAGCATCT	.	123.0	42.0	130.0	0.0	.	.	Atlas-SNP
RIMS1	22999	hgsc.bcm.edu	37	6	73102485	73102485	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	RIMS1	NM_014989	exon31	c.C4591T	p.R1531C	GTTGGCCGCCAAA	.	80.0	33.0	143.0	0.0	.	.	Atlas-SNP
GPRASP2	114928	hgsc.bcm.edu	37	X	101971961	101971961	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	GPRASP2	NM_138437	exon4	c.G2164A	p.G722R	ATGTCCGGGTTTC	.	167.0	138.0	215.0	0.0	.	.	Atlas-SNP
ERI1	90459	hgsc.bcm.edu	37	8	8865648	8865648	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ERI1	NM_153332	exon2	c.C277G	p.L93V	TTCAAGCTTGAAA	.	50.0	31.0	77.0	0.0	.	.	Atlas-SNP
SPECC1	92521	hgsc.bcm.edu	37	17	20108058	20108058	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SPECC1	NM_001033553	exon4	c.G696C	p.K232N	GGAGAAGAACAAG	.	157.0	7.0	232.0	0.0	.	.	Atlas-SNP
PLEKHB2	55041	hgsc.bcm.edu	37	2	131884342	131884342	+	Silent	SNP	A	A	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PLEKHB2	NM_001267062	exon4	c.A276G	p.E92E	TGCAGAAAGCACA	.	93.0	36.0	102.0	0.0	.	.	Atlas-SNP
ZNF536	9745	hgsc.bcm.edu	37	19	30935925	30935925	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ZNF536	NM_014717	exon2	c.C1456A	p.H486N	GACAAGCACTCCC	.	59.0	19.0	75.0	0.0	.	.	Atlas-SNP
NBPF3	84224	hgsc.bcm.edu	37	1	21806573	21806573	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	NBPF3	NM_032264	exon11	c.T1238G	p.F413C	AGAAAGAGCCTGA	.	225.0	30.0	185.0	0.0	.	.	Atlas-SNP
TNRC6B	23112	hgsc.bcm.edu	37	22	40657900	40657900	+	Silent	SNP	A	A	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	TNRC6B	NM_001024843	exon7	c.A288G	p.P96P	CTCTCCATCGCCA	.	181.0	69.0	248.0	0.0	.	.	Atlas-SNP
TLR1	7096	hgsc.bcm.edu	37	4	38799868	38799868	+	Silent	SNP	C	C	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	TLR1	NM_003263	exon4	c.G585C	p.V195V	GGGGAACACAATG	.	146.0	63.0	190.0	0.0	.	.	Atlas-SNP
SCRN3	79634	hgsc.bcm.edu	37	2	175292599	175292599	+	Missense_Mutation	SNP	T	T	G	rs74729826	byfrequency	TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SCRN3	NM_024583	exon8	c.T1251G	p.N417K	GTCAAATTTATCA	.	211.0	56.0	299.0	0.0	T|0.842;G|0.157	.	Atlas-SNP
NCL	4691	hgsc.bcm.edu	37	2	232325414	232325414	+	Missense_Mutation	SNP	T	T	A	rs199689485		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	NCL	NM_005381	exon4	c.A777T	p.E259D	ATCATCTTCATCA	.	217.0	22.0	302.0	0.0	.	.	Atlas-SNP
SSPO	23145	hgsc.bcm.edu	37	7	149476672	149476672	+	Silent	SNP	G	G	T	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	.	NM_198455	exon10	c.G1122T	p.L374L	GCCCCTGGGGCTC	.	296.0	26.0	355.0	0.0	.	.	Atlas-SNP
ANLN	54443	hgsc.bcm.edu	37	7	36447349	36447349	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ANLN	NM_018685	exon5	c.A880T	p.T294S	AAAGCTACTTCTC	.	117.0	12.0	111.0	0.0	.	.	Atlas-SNP
EYS	346007	hgsc.bcm.edu	37	6	66200486	66200486	+	Splice_Site	SNP	C	C	A	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	EYS	NM_001142800	exon6	c.862+1G>T	.	TTTTTACCTGAAA	.	372.0	15.0	468.0	0.0	.	.	Atlas-SNP
KCNK2	3776	hgsc.bcm.edu	37	1	215297991	215297991	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	KCNK2	NM_001017425	exon3	c.A373G	p.I125V	GCAGCAATAAATG	.	389.0	106.0	310.0	0.0	.	.	Atlas-SNP
NCL	4691	hgsc.bcm.edu	37	2	232325429	232325429	+	Missense_Mutation	SNP	T	T	A	rs144444417		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	NCL	NM_005381	exon4	c.A762T	p.E254D	ATCATCTTCATCA	.	240.0	18.0	331.0	0.0	T|1.000;A|0.000	.	Atlas-SNP
NPVF	64111	hgsc.bcm.edu	37	7	25266572	25266572	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	NPVF	NM_022150	exon2	c.T212A	p.I71N	ATCTTAATAACAT	.	57.0	22.0	7.0	0.0	.	.	Atlas-SNP
NR1H2	7376	hgsc.bcm.edu	37	19	50881825	50881825	+	Silent	SNP	G	G	A	rs55817866	byfrequency	TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	NR1H2	NM_007121	exon6	c.G519A	p.Q173Q	GAAACAGCAGCAG	.	81.0	12.0	176.0	0.0	G|0.903;A|0.097	.	Atlas-SNP
DLGAP5	9787	hgsc.bcm.edu	37	14	55647496	55647496	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	DLGAP5	NM_014750	exon6	c.T581C	p.V194A	TGCACAACTGTGG	.	124.0	49.0	172.0	0.0	.	.	Atlas-SNP
CYFIP2	26999	hgsc.bcm.edu	37	5	156721868	156721868	+	Splice_Site	SNP	G	G	A	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CYFIP2	NM_001037333	exon4	c.282+2G>A	.	TTCCCAGGTGAGA	.	239.0	17.0	330.0	0.0	.	.	Atlas-SNP
PPA1	5464	hgsc.bcm.edu	37	10	71969338	71969338	+	Silent	SNP	C	C	A	rs79719906	byfrequency	TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PPA1	NM_021129	exon7	c.G615T	p.A205A	ATTAAACGCAAAC	.	174.0	18.0	246.0	0.0	C|0.987;A|0.013	.	Atlas-SNP
ARSG	22901	hgsc.bcm.edu	37	17	66391287	66391287	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ARSG	NM_001267727	exon10	c.G1165T	p.V389L	GATGGTGTGGACG	.	281.0	24.0	289.0	0.0	.	.	Atlas-SNP
HIST2H2AC	8338	hgsc.bcm.edu	37	1	149858905	149858905	+	Silent	SNP	A	A	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	HIST2H2AC	NM_003517	exon1	c.A381G	p.K127K	AGCCAAAAGCAAA	.	394.0	78.0	281.0	0.0	.	.	Atlas-SNP
FERD3L	222894	hgsc.bcm.edu	37	7	19184746	19184746	+	Silent	SNP	C	C	T	rs199985178		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	FERD3L	NM_152898	exon1	c.G240A	p.E80E	GCGCTCCTCTTCC	.	84.0	7.0	54.0	0.0	.	.	Atlas-SNP
MST1	4485	hgsc.bcm.edu	37	3	49722905	49722905	+	Silent	SNP	T	T	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	MST1	NM_020998	exon12	c.A1422C	p.P474P	CTAACCTGGGGGG	.	464.0	22.0	389.0	0.0	.	.	Atlas-SNP
CD207	50489	hgsc.bcm.edu	37	2	71062832	71062832	+	Splice_Site	SNP	T	T	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CD207	NM_015717	exon2	c.73+2A>C	.	GTGGCTTGCTCGG	.	247.0	25.0	377.0	0.0	.	.	Atlas-SNP
SLC38A3	10991	hgsc.bcm.edu	37	3	50251833	50251833	+	Splice_Site	SNP	A	A	G	rs201228948		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SLC38A3	NM_006841	exon3	c.102-1A>G	.	GCCTACAGGTCGA	.	87.0	8.0	119.0	0.0	.	.	Atlas-SNP
GSK3A	2931	hgsc.bcm.edu	37	19	42736820	42736820	+	Silent	SNP	T	T	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	GSK3A	NM_019884	exon9	c.A1113C	p.R371R	CGGCGTTCGAGAT	.	128.0	59.0	126.0	0.0	.	.	Atlas-SNP
POLR2B	5431	hgsc.bcm.edu	37	4	57883331	57883331	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	POLR2B	NM_000938	exon15	c.A2078G	p.Y693C	CCACATATACACA	.	357.0	154.0	440.0	1.0	.	.	Atlas-SNP
HERC4	26091	hgsc.bcm.edu	37	10	69785411	69785411	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	HERC4	NM_022079	exon8	c.G800T	p.G267V	CCAGCTCCAAAAG	.	106.0	47.0	133.0	0.0	.	.	Atlas-SNP
CCDC66	285331	hgsc.bcm.edu	37	3	56650051	56650051	+	Missense_Mutation	SNP	A	A	T	rs74463118		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CCDC66	NM_001141947	exon13	c.A1813T	p.T605S	TCTACGACTTCTA	.	84.0	7.0	129.0	0.0	.	.	Atlas-SNP
MLLT6	4302	hgsc.bcm.edu	37	17	36861960	36861960	+	Silent	SNP	C	C	T	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	MLLT6	NM_005937	exon1	c.C75T	p.C25C	CTACTGCGATGGG	.	88.0	29.0	166.0	0.0	.	.	Atlas-SNP
VPS35	55737	hgsc.bcm.edu	37	16	46696258	46696258	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	VPS35	NM_018206	exon15	c.T1964G	p.L655R	GCAGCAAGGGCAC	.	141.0	52.0	211.0	0.0	.	.	Atlas-SNP
DNAH8	1769	hgsc.bcm.edu	37	6	38690855	38690855	+	Silent	SNP	G	G	A	rs180723141	byfrequency;alternate_allele	TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	DNAH8	NM_001206927	exon2	c.G270A	p.P90P	TGCACCGCGACCG	.	118.0	44.0	168.0	0.0	G|0.997;C|0.003	.	Atlas-SNP
CYFIP2	26999	hgsc.bcm.edu	37	5	156721863	156721863	+	Silent	SNP	T	T	C	rs200051515		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CYFIP2	NM_001037332	exon4	c.T279C	p.I93I	GGCCATTCCCAGG	.	236.0	29.0	324.0	0.0	.	.	Atlas-SNP
VSIG10	54621	hgsc.bcm.edu	37	12	118506333	118506333	+	Silent	SNP	C	C	T	rs199991783		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	.	NM_019086	exon8	c.G1416A	p.E472E	TTCCTCCTCCTCC	.	216.0	18.0	215.0	0.0	.	.	Atlas-SNP
NPVF	64111	hgsc.bcm.edu	37	7	25266575	25266575	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	NPVF	NM_022150	exon2	c.T209A	p.V70D	TTAATAACATTTT	.	319.0	19.0	331.0	0.0	.	.	Atlas-SNP
HSD17B13	345275	hgsc.bcm.edu	37	4	88231395	88231395	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	HSD17B13	NM_178135	exon6	c.A812G	p.K271R	ACTTACTTCTGTA	.	206.0	11.0	316.0	0.0	.	.	Atlas-SNP
ATP10A	57194	hgsc.bcm.edu	37	15	26026311	26026311	+	Missense_Mutation	SNP	C	C	T	rs146522541	byfrequency	TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ATP10A	NM_024490	exon2	c.G509A	p.R170H	CGAAGACGCACAA	.	146.0	60.0	216.0	0.0	C|1.000;T|0.000	.	Atlas-SNP
ZCCHC6	79670	hgsc.bcm.edu	37	9	88937856	88937856	+	Missense_Mutation	SNP	T	T	C	rs75851694	byfrequency	TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ZCCHC6	NM_024617	exon13	c.A2809G	p.K937E	AATTTTTTTCTTC	.	230.0	12.0	302.0	0.0	T|0.980;C|0.020	.	Atlas-SNP
DHX34	9704	hgsc.bcm.edu	37	19	47880440	47880440	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	DHX34	NM_014681	exon13	c.T2683A	p.C895S	GTGAACTGCGTCC	.	76.0	30.0	134.0	0.0	.	.	Atlas-SNP
TMEM2	23670	hgsc.bcm.edu	37	9	74347404	74347404	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	TMEM2	NM_013390	exon7	c.A1426G	p.I476V	CGTCTATGATCTC	.	112.0	41.0	174.0	0.0	.	.	Atlas-SNP
HERC4	26091	hgsc.bcm.edu	37	10	69785412	69785412	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	HERC4	NM_022079	exon8	c.G799T	p.G267X	CAGCTCCAAAAGT	.	101.0	42.0	132.0	0.0	.	.	Atlas-SNP
CYFIP2	26999	hgsc.bcm.edu	37	5	156721867	156721867	+	Splice_Site	SNP	A	A	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CYFIP2	NM_001037333	exon4	c.282+1A>C	.	ATTCCCAGGTGAG	.	238.0	18.0	327.0	0.0	.	.	Atlas-SNP
CCDC88A	55704	hgsc.bcm.edu	37	2	55536323	55536323	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CCDC88A	NM_018084	exon24	c.T4147G	p.F1383V	CATAAAATTTGTA	.	195.0	83.0	187.0	0.0	.	.	Atlas-SNP
SKIDA1	387640	hgsc.bcm.edu	37	10	21805486	21805486	+	Silent	SNP	C	C	T	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	.	NM_207371	exon4	c.G1266A	p.E422E	TTCCTCCTCCTCC	.	81.0	5.0	92.0	0.0	.	.	Atlas-SNP
PPP1R9A	55607	hgsc.bcm.edu	37	7	94855296	94855296	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PPP1R9A	NM_001166160	exon8	c.A1980T	p.E660D	AGATGAAGAAGAA	.	57.0	7.0	78.0	0.0	.	.	Atlas-SNP
ALOX15	246	hgsc.bcm.edu	37	17	4539265	4539265	+	Splice_Site	SNP	T	T	A	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ALOX15	NM_001140	exon9	c.952-2A>T	.	TGGAGCTGGAGCA	.	73.0	4.0	55.0	0.0	.	.	Atlas-SNP
FAM71E2	284418	hgsc.bcm.edu	37	19	55869899	55869899	+	Silent	SNP	T	T	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	.	NM_001145402	exon9	c.A2337C	p.P779P	GCCCCATGGCTGC	.	37.0	17.0	5.0	0.0	.	.	Atlas-SNP
SPECC1	92521	hgsc.bcm.edu	37	17	20108053	20108053	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SPECC1	NM_001033553	exon4	c.G691A	p.E231K	CTTGAGGAGAAGA	.	112.0	16.0	118.0	0.0	.	.	Atlas-SNP
PTPN13	5783	hgsc.bcm.edu	37	4	87735675	87735675	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PTPN13	NM_080685	exon48	c.C7444A	p.Q2482K	GAAGAGCAAAAAC	.	397.0	185.0	565.0	0.0	.	.	Atlas-SNP
CD207	50489	hgsc.bcm.edu	37	2	71062833	71062833	+	Splice_Site	SNP	G	G	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CD207	NM_015717	exon2	c.73+1C>G	.	TGGCTTGCTCGGG	.	250.0	33.0	375.0	0.0	.	.	Atlas-SNP
HIST1H1C	3006	hgsc.bcm.edu	37	6	26056377	26056377	+	Missense_Mutation	SNP	C	C	T	rs186228942	alternate_allele	TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	HIST1H1C	NM_005319	exon1	c.G280A	p.V94M	TTTGCACCAGAGT	.	240.0	103.0	318.0	1.0	C|0.999;G|0.000	.	Atlas-SNP
ARHGEF33	100271715	hgsc.bcm.edu	37	2	39181521	39181521	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ARHGEF33	NM_001145451	exon11	c.A1145T	p.E382V	GTGATGAAGAGAT	.	119.0	36.0	203.0	0.0	.	.	Atlas-SNP
RAD54B	25788	hgsc.bcm.edu	37	8	95390864	95390864	+	Splice_Site	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	RAD54B	NM_001205263	exon12	c.1696-2A>G	.	ATTGCCTATAGAA	.	97.0	28.0	101.0	0.0	.	.	Atlas-SNP
WHSC1L1	54904	hgsc.bcm.edu	37	8	38148153	38148153	+	Silent	SNP	C	C	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	WHSC1L1	NM_023034	exon17	c.G2958C	p.L986L	GATGTTCAGTGGC	.	148.0	52.0	174.0	0.0	.	.	Atlas-SNP
APOB	338	hgsc.bcm.edu	37	2	21235238	21235238	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	APOB	NM_000384	exon26	c.A4502G	p.Y1501C	AGGCCATATGTGC	.	190.0	77.0	260.0	0.0	.	.	Atlas-SNP
TALDO1	6888	hgsc.bcm.edu	37	11	759019	759019	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	TALDO1	NM_006755	exon3	c.G291T	p.K97N	ACTAAAGAAGATT	.	121.0	48.0	160.0	0.0	.	.	Atlas-SNP
TMPRSS13	84000	hgsc.bcm.edu	37	11	117789314	117789314	+	Silent	SNP	G	G	A	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	TMPRSS13	NM_001206790	exon2	c.C261T	p.A87A	TGCCCGGGCTGGA	.	146.0	18.0	71.0	0.0	.	.	Atlas-SNP
GLIPR1L2	144321	hgsc.bcm.edu	37	12	75816819	75816819	+	Missense_Mutation	SNP	G	G	C	rs77365041	byfrequency	TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	GLIPR1L2	NM_152436	exon4	c.G720C	p.K240N	GGACAAGAAAAAT	.	68.0	5.0	71.0	0.0	G|0.872;C|0.128	.	Atlas-SNP
TCEAL6	158931	hgsc.bcm.edu	37	X	101395778	101395778	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	TCEAL6	NM_001006938	exon3	c.G526A	p.G176R	TGTCCCCTTGGGC	.	164.0	23.0	108.0	0.0	.	.	Atlas-SNP
GCN1L1	10985	hgsc.bcm.edu	37	12	120582745	120582745	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	GCN1L1	NM_006836	exon40	c.C5137A	p.R1713S	CTGAGCGATCCAC	.	87.0	34.0	129.0	0.0	.	.	Atlas-SNP
ALB	213	hgsc.bcm.edu	37	4	74282071	74282071	+	Splice_Site	SNP	G	G	A	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ALB	NM_000477	exon10	c.1289+1G>A	.	GAATGCGTAAGTA	.	111.0	41.0	118.0	0.0	.	.	Atlas-SNP
LMTK2	22853	hgsc.bcm.edu	37	7	97821054	97821054	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	LMTK2	NM_014916	exon11	c.G1277A	p.W426X	AGCAGTGGAACGC	.	218.0	110.0	220.0	1.0	.	.	Atlas-SNP
ANKRD30A	91074	hgsc.bcm.edu	37	10	37508232	37508232	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ANKRD30A	NM_052997	exon34	c.C3424A	p.H1142N	GAATCACACCATC	.	164.0	54.0	244.0	0.0	.	.	Atlas-SNP
CTNNB1	1499	hgsc.bcm.edu	37	3	41266104	41266104	+	Missense_Mutation	SNP	G	G	T	rs28931589	bycluster	TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	CTNNB1,gallbladder,other,0	CTNNB1	NM_001098209	exon3	c.G101T	p.G34V	ACTCTGGAATCCA	.	299.0	112.0	491.0	0.0	G|1.000;T|0.000	.	Atlas-SNP
OR10G9	219870	hgsc.bcm.edu	37	11	123894415	123894415	+	Silent	SNP	G	G	C	rs150463109	bycluster;byfrequency;by1000genomes;alternate_allele	TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	OR10G9	NM_001001953	exon1	c.G696C	p.G232G	AGAGGGGAGGCAC	.	376.0	173.0	441.0	0.0	G|0.997;T|0.003	.	Atlas-SNP
LAMA2	3908	hgsc.bcm.edu	37	6	129636958	129636958	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	LAMA2	NM_000426	exon26	c.G3787T	p.E1263X	GCTCGGGAAGAAA	.	69.0	30.0	70.0	0.0	.	.	Atlas-SNP
ZNF658	26149	hgsc.bcm.edu	37	9	40784157	40784157	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ZNF658	NM_033160	exon4	c.G188A	p.G63E	TCTTCTCCTTTCT	.	182.0	11.0	242.0	0.0	.	.	Atlas-SNP
KRTAP10-2	386679	hgsc.bcm.edu	37	21	45970771	45970771	+	Missense_Mutation	SNP	C	C	T	rs200215960	byfrequency	TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	KRTAP10-2	NM_198693	exon1	c.G571A	p.V191I	AGCAGACAGGCTT	.	139.0	14.0	176.0	0.0	C|0.956;T|0.044	.	Atlas-SNP
IMMT	10989	hgsc.bcm.edu	37	2	86385804	86385804	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	IMMT	NM_006839	exon10	c.A1073G	p.Y358C	TCATGATACTGAG	.	136.0	58.0	173.0	0.0	.	.	Atlas-SNP
OR2A14	135941	hgsc.bcm.edu	37	7	143826732	143826732	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	OR2A14	NM_001001659	exon1	c.T527A	p.F176Y	ACCACTTCTTCTG	.	51.0	14.0	10.0	0.0	.	.	Atlas-SNP
GPR50	9248	hgsc.bcm.edu	37	X	150349560	150349560	+	Missense_Mutation	SNP	C	C	T	rs199797606		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	GPR50	NM_004224	exon2	c.C1505T	p.T502I	AACCCACCACTGG	.	18.0	17.0	0.0	0.0	.	.	Atlas-SNP
MIP	4284	hgsc.bcm.edu	37	12	56848277	56848277	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	MIP	NM_012064	exon1	c.G121T	p.V41F	GCAGAACATGCAG	.	334.0	133.0	439.0	0.0	.	.	Atlas-SNP
CAMK2A	815	hgsc.bcm.edu	37	5	149629865	149629865	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CAMK2A	NM_171825	exon11	c.C824A	p.S275Y	ACGGTGGAGCGGT	.	77.0	26.0	106.0	0.0	.	.	Atlas-SNP
SSPO	23145	hgsc.bcm.edu	37	7	149476666	149476666	+	Splice_Site	SNP	G	G	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	.	NM_198455	exon9	c.1116+2G>C	.	GTGACAGCCCCTG	.	296.0	12.0	372.0	0.0	.	.	Atlas-SNP
ANKRD12	23253	hgsc.bcm.edu	37	18	9257082	9257082	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ANKRD12	NM_015208	exon9	c.A3817G	p.I1273V	GAGCGGATTAAAC	.	235.0	86.0	309.0	1.0	.	.	Atlas-SNP
ZNF208	7757	hgsc.bcm.edu	37	19	22155940	22155940	+	Silent	SNP	A	A	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ZNF208	NM_007153	exon4	c.T1896C	p.A632A	CTCTCCAGCATGA	.	83.0	30.0	69.0	0.0	.	.	Atlas-SNP
RABGAP1	23637	hgsc.bcm.edu	37	9	125772702	125772702	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	RABGAP1	NM_012197	exon11	c.G1444C	p.E482Q	GAATCAGAAAGAG	.	75.0	31.0	84.0	0.0	.	.	Atlas-SNP
SACS	26278	hgsc.bcm.edu	37	13	23929049	23929049	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SACS	NM_014363	exon8	c.G1702T	p.D568Y	CCCAGTCACAGCT	.	142.0	48.0	180.0	0.0	.	.	Atlas-SNP
FERD3L	222894	hgsc.bcm.edu	37	7	19184752	19184752	+	Silent	SNP	C	C	T	rs73079402		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	FERD3L	NM_152898	exon1	c.G234A	p.E78E	CTCTTCCTCCTCC	.	87.0	13.0	61.0	0.0	C|1.000;T|0.000	.	Atlas-SNP
ARHGEF33	100271715	hgsc.bcm.edu	37	2	39181520	39181520	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ARHGEF33	NM_001145451	exon11	c.G1144A	p.E382K	GGTGATGAAGAGA	.	120.0	38.0	201.0	0.0	.	.	Atlas-SNP
ZRANB3	84083	hgsc.bcm.edu	37	2	135985575	135985575	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ZRANB3	NM_032143	exon14	c.A1965G	p.I655M	GCTATCTATTTGC	.	104.0	37.0	92.0	0.0	.	.	Atlas-SNP
CYFIP2	26999	hgsc.bcm.edu	37	5	156721861	156721861	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CYFIP2	NM_001037332	exon4	c.A277T	p.I93F	CGGGCCATTCCCA	.	237.0	24.0	327.0	0.0	.	.	Atlas-SNP
WDR81	124997	hgsc.bcm.edu	37	17	1631343	1631343	+	Missense_Mutation	SNP	G	G	T	rs200758098		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	WDR81	NM_001163809	exon1	c.G3090T	p.E1030D	TGCTGAGGAGGAG	.	48.0	4.0	53.0	0.0	.	.	Atlas-SNP
FNDC1	84624	hgsc.bcm.edu	37	6	159660797	159660797	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	FNDC1	NM_032532	exon14	c.A4429G	p.T1477A	CGCACGACCACCA	.	49.0	6.0	27.0	0.0	.	.	Atlas-SNP
TRIM65	201292	hgsc.bcm.edu	37	17	73887372	73887372	+	Missense_Mutation	SNP	G	G	A	rs144407004		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	TRIM65	NM_173547	exon6	c.C1042T	p.R348C	CCTGGCGCGACAG	.	115.0	35.0	131.0	0.0	G|1.000;A|0.000	.	Atlas-SNP
SSPO	23145	hgsc.bcm.edu	37	7	149506213	149506213	+	Splice_Site	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	.	NM_198455	exon63	c.9204+1T>C	.	AGCAGCTGCGCAG	.	413.0	33.0	539.0	0.0	.	.	Atlas-SNP
PPA1	5464	hgsc.bcm.edu	37	10	71969413	71969413	+	Silent	SNP	A	A	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PPA1	NM_021129	exon7	c.T540C	p.P180P	GTAGCCAGGTTTC	.	245.0	18.0	318.0	0.0	.	.	Atlas-SNP
COL7A1	1294	hgsc.bcm.edu	37	3	48608294	48608294	+	Silent	SNP	C	C	T	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	COL7A1	NM_000094	exon94	c.G7272A	p.R2424R	CCTCACCCGCTCT	.	173.0	74.0	210.0	0.0	.	.	Atlas-SNP
FAM71E2	284418	hgsc.bcm.edu	37	19	55869903	55869903	+	Missense_Mutation	SNP	T	T	G	rs28712579	alternate_allele	TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	.	NM_001145402	exon9	c.A2333C	p.Q778P	CATGGCTGCTCCT	.	35.0	19.0	0.0	0.0	C|1.000;|0.000	.	Atlas-SNP
TP53	7157	hgsc.bcm.edu	37	17	7578503	7578503	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	TP53,NS,carcinoma,+1	TP53	NM_000546	exon5	c.G427A	p.V143M	GCTGCACAGGGCA	.	124.0	52.0	167.0	0.0	.	.	Atlas-SNP
GABRG2	2566	hgsc.bcm.edu	37	5	161569294	161569294	+	Silent	SNP	G	G	A	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	GABRG2	NM_198903	exon8	c.G1014A	p.K338K	CAATAAGGATGCT	.	167.0	63.0	240.0	0.0	.	.	Atlas-SNP
ARHGEF12	23365	hgsc.bcm.edu	37	11	120310884	120310884	+	Missense_Mutation	SNP	A	A	G	rs187048571		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ARHGEF12	NM_015313	exon13	c.A1046G	p.H349R	CACCTCATATTAT	.	149.0	57.0	253.0	0.0	A|0.999;G|0.001	.	Atlas-SNP
TSKS	60385	hgsc.bcm.edu	37	19	50249950	50249950	+	Missense_Mutation	SNP	C	C	T	rs76911687		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	TSKS	NM_021733	exon6	c.G769A	p.E257K	CCGGCTCCTGCTT	.	35.0	6.0	43.0	0.0	.	.	Atlas-SNP
CD207	50489	hgsc.bcm.edu	37	2	71062836	71062836	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CD207	NM_015717	exon1	c.G71A	p.R24Q	CTTGCTCGGGGCC	.	248.0	18.0	385.0	0.0	.	.	Atlas-SNP
PSMD12	5718	hgsc.bcm.edu	37	17	65346351	65346351	+	Silent	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PSMD12	NM_002816	exon4	c.A399G	p.E133E	CTTGCCTTCGGTA	.	154.0	47.0	137.0	0.0	.	.	Atlas-SNP
VSIG10L	147645	hgsc.bcm.edu	37	19	51835894	51835894	+	Missense_Mutation	SNP	C	C	G	rs200336358		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	.	NM_001163922	exon10	c.G2575C	p.A859P	TCTGTGCCTGGAA	.	95.0	12.0	132.0	0.0	.	.	Atlas-SNP
HIST1H4G	8369	hgsc.bcm.edu	37	6	26246913	26246913	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	HIST1H4G	NM_003547	exon1	c.T293C	p.L98P	CCTTACAGGGTTC	.	115.0	40.0	138.0	0.0	.	.	Atlas-SNP
