Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	TranscriptID	Exon	ChromChange	AAChange	COSMIC_Codon	COSMIC_Gene	Drug_Target
RPN2	6185	hgsc.bcm.edu	36	20	35275579	35275579	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AG-3575-01A-01W-0831-10	TCGA-AG-3575-10A-01W-0831-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_002951	exon9	c.A989G	p.D330G	.	.	.
ZMYND8	23613	hgsc.bcm.edu	36	20	45338686	45338686	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-AG-3575-01A-01W-0831-10	TCGA-AG-3575-10A-01W-0831-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_012408	exon11	c.A1259T	p.N420I	.	.	.
SULF2	55959	hgsc.bcm.edu	36	20	45728011	45728011	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AG-3575-01A-01W-0831-10	TCGA-AG-3575-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_198596	exon13	c.C1899T	p.H633H	.	.	.
IL17RA	23765	hgsc.bcm.edu	36	22	15961356	15961356	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AG-3575-01A-01W-0831-10	TCGA-AG-3575-10A-01W-0831-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_014339	exon5	c.A535C	p.N179H	.	.	.
THOC5	8563	hgsc.bcm.edu	36	22	28238011	28238011	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AG-3575-01A-01W-0831-10	TCGA-AG-3575-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_003678	exon18	c.G1796A	p.R599Q	.	.	.
POLR3H	171568	hgsc.bcm.edu	36	22	40258663	40258663	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AG-3575-01A-01W-0831-10	TCGA-AG-3575-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_138338	exon4	c.C241T	p.L81L	.	.	.
SLC1A6	6511	hgsc.bcm.edu	36	19	14943669	14943669	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AG-3575-01A-01W-0831-10	TCGA-AG-3575-10A-01W-0831-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_005071	exon2	c.G223T	p.A75S	.	.	.
NLRP7	199713	hgsc.bcm.edu	36	19	60139586	60139586	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AG-3575-01A-01W-0831-10	TCGA-AG-3575-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_139176	exon6	c.G2071A	p.A691T	.	.	.
ZFP28	140612	hgsc.bcm.edu	36	19	61758512	61758512	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AG-3575-01A-01W-0831-10	TCGA-AG-3575-10A-01W-0831-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_020828	exon8	c.C2546A	p.S849X	.	.	.
UBR5	51366	hgsc.bcm.edu	36	8	103339052	103339052	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AG-3575-01A-01W-0831-10	TCGA-AG-3575-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_015902	exon58	c.C8171T	p.T2724I	.	.	.
PNMA2	10687	hgsc.bcm.edu	36	8	26422004	26422004	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AG-3575-01A-01W-0831-10	TCGA-AG-3575-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_007257	exon3	c.C185T	p.A62V	.	.	.
RB1CC1	9821	hgsc.bcm.edu	36	8	53731503	53731503	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AG-3575-01A-01W-0831-10	TCGA-AG-3575-10A-01W-0831-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001083617	exon15	c.G3439T	p.E1147X	.	.	.
KCNA3	3738	hgsc.bcm.edu	36	1	111017711	111017711	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AG-3575-01A-01W-0831-10	TCGA-AG-3575-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_002232	exon1	c.C1244T	p.A415V	.	.	.
LMX1A	4009	hgsc.bcm.edu	36	1	163449591	163449591	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AG-3575-01A-01W-0831-10	TCGA-AG-3575-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_177398	exon5	c.C580T	p.R194C	.	.	.
HMCN1	83872	hgsc.bcm.edu	36	1	184326666	184326666	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AG-3575-01A-01W-0831-10	TCGA-AG-3575-10A-01W-0831-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_031935	exon64	c.G9881T	p.R3294I	.	.	.
KDM5B	10765	hgsc.bcm.edu	36	1	201008981	201008981	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AG-3575-01A-01W-0831-10	TCGA-AG-3575-10A-01W-0831-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_006618	exon4	c.T464A	p.I155N	.	.	.
WDR63	126820	hgsc.bcm.edu	36	1	85356049	85356049	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AG-3575-01A-01W-0831-10	TCGA-AG-3575-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_145172	exon17	c.G1836A	p.P612P	.	.	.
TAS1R2	80834	hgsc.bcm.edu	36	1	19053743	19053743	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AG-3575-01A-01W-0831-10	TCGA-AG-3575-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_152232	exon3	c.C808T	p.R270C	.	.	.
ETS1	2113	hgsc.bcm.edu	36	11	127855418	127855418	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AG-3575-01A-01W-0831-10	TCGA-AG-3575-10A-01W-0831-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_005238	exon6	c.A869G	p.D290G	.	.	.
SAPS3	55291	hgsc.bcm.edu	36	11	68100025	68100025	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AG-3575-01A-01W-0831-10	TCGA-AG-3575-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001164164	exon14	c.C1330T	p.R444X	.	.	.
C11orf82	220042	hgsc.bcm.edu	36	11	82320616	82320617	+	Frame_Shift_Del	DEL	CT	CT	-	novel	unknown	TCGA-AG-3575-01A-01W-0831-10	TCGA-AG-3575-10A-01W-0831-10	CT	CT	CT	-	CT	CT	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_145018	exon6	c.588_589del	p.196_197del	.	.	.
GRIK2	2898	hgsc.bcm.edu	36	6	102354324	102354324	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AG-3575-01A-01W-0831-10	TCGA-AG-3575-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_021956	exon7	c.C1060T	p.R354C	.	.	.
HEY2	23493	hgsc.bcm.edu	36	6	126114862	126114862	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AG-3575-01A-01W-0831-10	TCGA-AG-3575-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_012259	exon3	c.G179A	p.R60H	.	.	.
ARID1B	57492	hgsc.bcm.edu	36	6	157570349	157570349	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AG-3575-01A-01W-0831-10	TCGA-AG-3575-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_017519	exon19	c.C6343T	p.R2115X	.	.	.
TMEM63B	55362	hgsc.bcm.edu	36	6	44228334	44228334	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AG-3575-01A-01W-0831-10	TCGA-AG-3575-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_018426	exon20	c.C1863T	p.G621G	.	.	.
TXNDC5	81567	hgsc.bcm.edu	36	6	7849854	7849854	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AG-3575-01A-01W-0831-10	TCGA-AG-3575-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_030810	exon2	c.C365T	p.T122M	.	.	.
CD300E	342510	hgsc.bcm.edu	36	17	70125078	70125078	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AG-3575-01A-01W-0831-10	TCGA-AG-3575-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_181449	exon2	c.C162T	p.Y54Y	.	.	.
TP53	7157	hgsc.bcm.edu	36	17	7518993	7518993	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AG-3575-01A-01W-0831-10	TCGA-AG-3575-10A-01W-0831-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001126114	exon6	c.T581A	p.L194H	TP53,breast,NS,Substitution - Missense,-1	.	.
SLC38A7	55238	hgsc.bcm.edu	36	16	57258871	57258871	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AG-3575-01A-01W-0831-10	TCGA-AG-3575-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_018231	exon12	c.C1308T	p.Y436Y	.	.	.
CDH8	1006	hgsc.bcm.edu	36	16	60246968	60246968	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AG-3575-01A-01W-0831-10	TCGA-AG-3575-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001796	exon11	c.G1813A	p.V605I	.	.	.
CDH2	1000	hgsc.bcm.edu	36	18	23826640	23826640	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AG-3575-01A-01W-0831-10	TCGA-AG-3575-10A-01W-0831-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001792	exon9	c.G1321T	p.D441Y	.	.	.
WDR52	55779	hgsc.bcm.edu	36	3	114582543	114582543	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AG-3575-01A-01W-0831-10	TCGA-AG-3575-10A-01W-0831-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001164496	exon16	c.C1945G	p.L649V	.	.	.
C3orf30	152405	hgsc.bcm.edu	36	3	120348420	120348420	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AG-3575-01A-01W-0831-10	TCGA-AG-3575-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_152539	exon1	c.G694A	p.V232I	.	.	.
CPB1	1360	hgsc.bcm.edu	36	3	150045993	150045993	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AG-3575-01A-01W-0831-10	TCGA-AG-3575-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001871	exon9	c.C871T	p.R291C	.	.	.
CTNNB1	1499	hgsc.bcm.edu	36	3	41252896	41252896	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AG-3575-01A-01W-0831-10	TCGA-AG-3575-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001098210	exon12	c.G1856A	p.C619Y	.	.	.
KRAS	3845	hgsc.bcm.edu	36	12	25289551	25289551	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AG-3575-01A-01W-0831-10	TCGA-AG-3575-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004985	exon2	c.G35T	p.G12V	KRAS,haematopoietic_and_lymphoid_tissue,NS,Substitution - Missense,0	.	.
KCNA6	3742	hgsc.bcm.edu	36	12	4790003	4790003	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AG-3575-01A-01W-0831-10	TCGA-AG-3575-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_002235	exon1	c.G535A	p.V179I	.	.	.
GLIPR1L2	144321	hgsc.bcm.edu	36	12	74103049	74103049	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AG-3575-01A-01W-0831-10	TCGA-AG-3575-10A-01W-0831-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_152436	exon4	c.A683C	p.K228T	.	.	.
PYGO1	26108	hgsc.bcm.edu	36	15	53626552	53626552	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AG-3575-01A-01W-0831-10	TCGA-AG-3575-10A-01W-0831-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_015617	exon3	c.A221G	p.D74G	.	.	.
IDH3A	3419	hgsc.bcm.edu	36	15	76241020	76241020	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AG-3575-01A-01W-0831-10	TCGA-AG-3575-10A-01W-0831-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_005530	exon5	c.A332G	p.N111S	.	.	.
UNC5C	8633	hgsc.bcm.edu	36	4	96359195	96359195	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AG-3575-01A-01W-0831-10	TCGA-AG-3575-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_003728	exon9	c.C1593T	p.T531T	.	.	.
ACMSD	130013	hgsc.bcm.edu	36	2	135337624	135337624	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AG-3575-01A-01W-0831-10	TCGA-AG-3575-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_138326	exon5	c.G439A	p.V147I	.	.	.
LCT	3938	hgsc.bcm.edu	36	2	136278851	136278851	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AG-3575-01A-01W-0831-10	TCGA-AG-3575-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_002299	exon10	c.G4420A	p.V1474M	.	.	.
REG1A	5967	hgsc.bcm.edu	36	2	79203482	79203482	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AG-3575-01A-01W-0831-10	TCGA-AG-3575-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_002909	exon5	c.G329A	p.R110H	.	.	.
GCNT1	2650	hgsc.bcm.edu	36	9	78307158	78307158	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AG-3575-01A-01W-0831-10	TCGA-AG-3575-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001097635	exon3	c.C41T	p.P14L	.	.	.
GOLM1	51280	hgsc.bcm.edu	36	9	87884048	87884048	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AG-3575-01A-01W-0831-10	TCGA-AG-3575-10A-01W-0831-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_177937	exon2	c.G8T	p.G3V	.	.	.
TMTC4	84899	hgsc.bcm.edu	36	13	100085385	100085385	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AG-3575-01A-01W-0831-10	TCGA-AG-3575-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_032813	exon11	c.G1268A	p.R423Q	.	.	.
SORCS1	114815	hgsc.bcm.edu	36	10	108421061	108421061	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AG-3575-01A-01W-0831-10	TCGA-AG-3575-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_052918	exon16	c.C2113T	p.R705W	.	.	.
IL9	3578	hgsc.bcm.edu	36	5	135256021	135256021	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AG-3575-01A-01W-0831-10	TCGA-AG-3575-10A-01W-0831-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_000590	exon5	c.T393C	p.I131I	.	.	.
CDH10	1008	hgsc.bcm.edu	36	5	24528751	24528751	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AG-3575-01A-01W-0831-10	TCGA-AG-3575-10A-01W-0831-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_006727	exon10	c.T1556C	p.L519S	.	.	.
CARD6	84674	hgsc.bcm.edu	36	5	40889693	40889693	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AG-3575-01A-01W-0831-10	TCGA-AG-3575-10A-01W-0831-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_032587	exon3	c.A2502C	p.Q834H	.	.	.
